Query 007362
Match_columns 606
No_of_seqs 329 out of 2861
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 23:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 4.2E-39 1.4E-43 341.5 19.9 325 261-606 3-328 (363)
2 1um8_A ATP-dependent CLP prote 100.0 1.7E-34 5.7E-39 307.3 24.3 338 259-605 7-344 (376)
3 1g41_A Heat shock protein HSLU 100.0 9.9E-33 3.4E-37 300.3 23.0 270 262-606 4-413 (444)
4 1ofh_A ATP-dependent HSL prote 99.9 9E-26 3.1E-30 230.9 18.8 268 262-604 4-277 (310)
5 1r6b_X CLPA protein; AAA+, N-t 99.9 7.1E-25 2.4E-29 253.4 19.8 273 250-603 431-718 (758)
6 4fcw_A Chaperone protein CLPB; 99.9 3.2E-24 1.1E-28 220.4 19.6 259 265-603 9-281 (311)
7 4b4t_J 26S protease regulatory 99.9 1.3E-23 4.3E-28 225.8 21.1 221 271-602 147-371 (405)
8 3pxi_A Negative regulator of g 99.9 1.2E-23 4.2E-28 243.3 16.9 258 249-603 463-727 (758)
9 4b4t_I 26S protease regulatory 99.9 7.4E-23 2.5E-27 220.8 21.7 222 270-603 180-406 (437)
10 4b4t_M 26S protease regulatory 99.9 1.2E-22 3.9E-27 220.8 20.7 221 271-602 180-404 (434)
11 1qvr_A CLPB protein; coiled co 99.9 2.9E-23 1E-27 243.3 15.6 275 249-603 530-822 (854)
12 4b4t_H 26S protease regulatory 99.9 2.2E-22 7.5E-27 218.9 20.9 218 275-602 211-432 (467)
13 4b4t_L 26S protease subunit RP 99.9 3.1E-22 1.1E-26 217.5 21.3 221 271-602 180-404 (437)
14 4b4t_K 26S protease regulatory 99.9 6E-22 2.1E-26 214.9 21.3 220 274-603 173-397 (428)
15 3eie_A Vacuolar protein sortin 99.9 1.3E-20 4.3E-25 196.7 19.8 222 271-603 17-238 (322)
16 3syl_A Protein CBBX; photosynt 99.9 3E-20 1E-24 190.8 21.4 231 263-601 21-263 (309)
17 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.1E-20 7.1E-25 195.6 20.4 219 275-603 14-233 (322)
18 2qp9_X Vacuolar protein sortin 99.8 2.1E-20 7.1E-25 198.2 19.2 222 271-603 50-271 (355)
19 3cf2_A TER ATPase, transitiona 99.8 5.9E-21 2E-25 220.8 11.6 221 275-603 479-701 (806)
20 3cf2_A TER ATPase, transitiona 99.8 7.7E-20 2.6E-24 211.6 16.2 218 274-602 205-424 (806)
21 2zan_A Vacuolar protein sortin 99.8 3E-19 1E-23 194.8 17.2 222 271-603 133-355 (444)
22 3cf0_A Transitional endoplasmi 99.8 1.4E-18 4.8E-23 179.7 21.3 217 275-602 17-238 (301)
23 3vfd_A Spastin; ATPase, microt 99.8 7E-19 2.4E-23 188.1 19.0 220 275-603 117-336 (389)
24 3m6a_A ATP-dependent protease 99.8 1.7E-19 6E-24 201.5 14.8 240 263-603 71-318 (543)
25 3d8b_A Fidgetin-like protein 1 99.8 1.1E-18 3.8E-23 184.9 19.6 221 274-603 85-305 (357)
26 3b9p_A CG5977-PA, isoform A; A 99.8 2.3E-18 8E-23 176.1 19.4 221 275-603 23-243 (297)
27 2bjv_A PSP operon transcriptio 99.8 1.2E-18 4E-23 175.9 16.2 224 270-599 4-239 (265)
28 2ce7_A Cell division protein F 99.8 5.5E-18 1.9E-22 186.4 19.5 220 271-601 15-237 (476)
29 1lv7_A FTSH; alpha/beta domain 99.8 1.2E-17 4E-22 167.8 19.9 222 271-603 11-235 (257)
30 3h4m_A Proteasome-activating n 99.8 9.1E-18 3.1E-22 170.5 18.9 216 275-603 19-241 (285)
31 1ojl_A Transcriptional regulat 99.8 1.2E-18 4.2E-23 180.9 10.8 221 274-598 3-233 (304)
32 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.4E-17 4.8E-22 166.4 17.8 219 275-601 8-230 (262)
33 3pfi_A Holliday junction ATP-d 99.7 7E-17 2.4E-21 168.1 19.8 207 271-600 28-234 (338)
34 3hu3_A Transitional endoplasmi 99.7 5.2E-17 1.8E-21 179.4 18.2 216 275-603 206-425 (489)
35 2dhr_A FTSH; AAA+ protein, hex 99.7 1.5E-16 5.2E-21 175.8 20.1 220 271-601 30-252 (499)
36 3pvs_A Replication-associated 99.7 5.1E-17 1.7E-21 177.6 13.2 196 270-600 24-222 (447)
37 2x8a_A Nuclear valosin-contain 99.7 3.3E-16 1.1E-20 160.3 18.0 222 275-603 12-236 (274)
38 3t15_A Ribulose bisphosphate c 99.7 9.6E-17 3.3E-21 165.6 13.3 129 325-465 36-165 (293)
39 3dzd_A Transcriptional regulat 99.7 3.3E-17 1.1E-21 174.7 9.8 210 306-598 133-359 (368)
40 1ny5_A Transcriptional regulat 99.7 3.4E-16 1.2E-20 167.8 16.7 211 304-598 139-368 (387)
41 1ixz_A ATP-dependent metallopr 99.7 1.4E-15 4.9E-20 152.3 19.8 221 271-602 15-238 (254)
42 1g8p_A Magnesium-chelatase 38 99.7 3.6E-16 1.2E-20 162.7 15.9 206 326-602 46-304 (350)
43 3uk6_A RUVB-like 2; hexameric 99.7 7.3E-16 2.5E-20 161.9 17.6 214 271-602 43-312 (368)
44 1hqc_A RUVB; extended AAA-ATPa 99.7 2.3E-15 8E-20 155.1 19.8 201 275-597 14-215 (324)
45 2r62_A Cell division protease 99.7 1.6E-17 5.4E-22 167.5 1.7 219 275-601 13-234 (268)
46 1iy2_A ATP-dependent metallopr 99.6 3E-15 1E-19 152.4 18.5 221 271-602 39-262 (278)
47 2r44_A Uncharacterized protein 99.6 2.3E-16 7.9E-21 164.1 10.0 225 266-602 20-279 (331)
48 1ypw_A Transitional endoplasmi 99.6 1.8E-17 6.2E-22 193.2 0.2 222 274-603 478-701 (806)
49 3u61_B DNA polymerase accessor 99.6 3.4E-15 1.2E-19 154.7 16.1 194 270-597 24-220 (324)
50 1d2n_A N-ethylmaleimide-sensit 99.6 1.4E-15 4.7E-20 154.1 12.5 175 325-596 64-245 (272)
51 3f9v_A Minichromosome maintena 99.6 2.1E-16 7.1E-21 178.5 4.5 255 264-602 286-569 (595)
52 2c9o_A RUVB-like 1; hexameric 99.6 5.6E-15 1.9E-19 161.4 15.4 104 273-406 37-142 (456)
53 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.2E-14 1.1E-18 157.3 18.6 228 265-602 14-268 (500)
54 2chg_A Replication factor C sm 99.6 6.4E-14 2.2E-18 134.1 16.5 184 275-598 19-209 (226)
55 3n70_A Transport activator; si 99.5 5.3E-15 1.8E-19 136.6 7.4 96 275-429 3-101 (145)
56 3te6_A Regulatory protein SIR3 99.5 5.5E-14 1.9E-18 147.1 14.2 219 274-600 21-286 (318)
57 1iqp_A RFCS; clamp loader, ext 99.5 1.2E-13 4.1E-18 141.6 14.9 185 275-597 27-216 (327)
58 1njg_A DNA polymerase III subu 99.5 3.2E-13 1.1E-17 130.4 17.0 192 275-597 25-232 (250)
59 1l8q_A Chromosomal replication 99.5 2.2E-13 7.4E-18 141.3 16.2 172 326-599 38-214 (324)
60 2chq_A Replication factor C sm 99.5 1E-13 3.5E-18 141.7 11.3 188 271-597 16-208 (319)
61 1sxj_D Activator 1 41 kDa subu 99.5 1.1E-13 3.7E-18 144.0 11.6 184 275-598 39-240 (353)
62 1ypw_A Transitional endoplasmi 99.5 2.5E-13 8.5E-18 158.4 15.4 219 271-601 203-423 (806)
63 2qby_B CDC6 homolog 3, cell di 99.5 8.7E-13 3E-17 138.6 17.1 202 273-598 20-250 (384)
64 1jbk_A CLPB protein; beta barr 99.5 1.8E-13 6.1E-18 128.0 10.1 160 275-543 24-194 (195)
65 1jr3_A DNA polymerase III subu 99.4 7.9E-13 2.7E-17 138.4 15.7 189 275-597 18-225 (373)
66 3co5_A Putative two-component 99.4 2.2E-14 7.6E-19 132.2 3.3 96 275-430 6-101 (143)
67 3k1j_A LON protease, ATP-depen 99.4 2.6E-13 8.8E-18 153.4 12.2 141 386-598 197-353 (604)
68 2v1u_A Cell division control p 99.4 7E-13 2.4E-17 138.7 14.3 213 273-600 19-256 (387)
69 1fnn_A CDC6P, cell division co 99.4 2.3E-12 7.8E-17 135.3 18.1 210 274-601 18-255 (389)
70 1sxj_B Activator 1 37 kDa subu 99.4 7.3E-13 2.5E-17 135.5 13.7 186 271-597 20-213 (323)
71 1in4_A RUVB, holliday junction 99.4 3.3E-12 1.1E-16 133.8 18.9 208 270-601 23-231 (334)
72 3bos_A Putative DNA replicatio 99.4 2.1E-12 7.3E-17 125.9 14.8 169 326-602 53-226 (242)
73 1sxj_A Activator 1 95 kDa subu 99.4 2.6E-12 8.9E-17 142.5 17.1 205 271-597 38-256 (516)
74 3pxg_A Negative regulator of g 99.4 2.7E-13 9.3E-18 148.7 8.9 149 271-546 179-337 (468)
75 2z4s_A Chromosomal replication 99.4 1.4E-12 4.7E-17 142.1 14.3 174 326-601 131-314 (440)
76 1sxj_E Activator 1 40 kDa subu 99.4 3.5E-12 1.2E-16 133.1 14.1 65 517-598 177-242 (354)
77 1qvr_A CLPB protein; coiled co 99.4 8.1E-12 2.8E-16 146.4 18.6 189 271-579 169-368 (854)
78 1sxj_C Activator 1 40 kDa subu 99.4 2.1E-12 7.2E-17 135.1 11.9 171 271-579 24-201 (340)
79 2p65_A Hypothetical protein PF 99.4 1.6E-12 5.5E-17 121.6 9.6 115 275-429 24-149 (187)
80 2qby_A CDC6 homolog 1, cell di 99.3 1.7E-11 5.7E-16 128.0 17.1 209 274-599 21-251 (386)
81 3pxi_A Negative regulator of g 99.3 1.8E-12 6.2E-17 149.9 10.4 172 271-578 179-360 (758)
82 1r6b_X CLPA protein; AAA+, N-t 99.3 2.4E-12 8.2E-17 148.7 10.4 191 269-578 183-384 (758)
83 1a5t_A Delta prime, HOLB; zinc 99.3 2.2E-11 7.7E-16 127.5 16.6 149 326-578 25-193 (334)
84 3f8t_A Predicted ATPase involv 99.3 2.4E-12 8.3E-17 140.3 9.2 234 264-600 205-463 (506)
85 2gno_A DNA polymerase III, gam 99.3 5.9E-12 2E-16 130.9 11.1 102 277-430 1-108 (305)
86 1w5s_A Origin recognition comp 99.0 6.3E-09 2.2E-13 110.0 15.7 217 274-598 23-271 (412)
87 3ec2_A DNA replication protein 98.7 2.3E-08 7.7E-13 94.5 8.2 66 326-401 39-111 (180)
88 4akg_A Glutathione S-transfera 98.7 2.4E-08 8.4E-13 127.9 9.0 153 326-549 1268-1433(2695)
89 2qen_A Walker-type ATPase; unk 98.7 4.7E-07 1.6E-11 93.0 16.9 50 275-359 14-63 (350)
90 4akg_A Glutathione S-transfera 98.4 2.9E-06 9.8E-11 109.2 17.4 67 326-405 646-712 (2695)
91 1jr3_D DNA polymerase III, del 98.3 1.3E-06 4.5E-11 91.0 9.4 164 326-598 19-190 (343)
92 3cmw_A Protein RECA, recombina 98.3 9.7E-07 3.3E-11 109.2 9.5 154 269-430 1017-1203(1706)
93 1u0j_A DNA replication protein 98.3 2.5E-06 8.5E-11 86.9 10.8 78 325-438 104-181 (267)
94 2fna_A Conserved hypothetical 98.3 3.2E-06 1.1E-10 86.8 11.4 35 326-360 31-65 (357)
95 2kjq_A DNAA-related protein; s 98.2 1.3E-06 4.3E-11 81.1 6.4 69 326-429 37-108 (149)
96 2w58_A DNAI, primosome compone 98.2 8E-07 2.7E-11 85.1 3.7 37 326-362 55-94 (202)
97 1tue_A Replication protein E1; 98.2 1.6E-06 5.6E-11 85.1 5.8 79 326-437 59-137 (212)
98 3vkg_A Dynein heavy chain, cyt 98.1 5.6E-06 1.9E-10 107.3 11.0 152 326-548 1305-1470(3245)
99 2qgz_A Helicase loader, putati 98.1 1.3E-06 4.4E-11 90.6 3.5 37 326-362 153-193 (308)
100 3vkg_A Dynein heavy chain, cyt 97.9 8.3E-05 2.8E-09 96.7 16.4 67 326-405 605-671 (3245)
101 2vhj_A Ntpase P4, P4; non- hyd 97.8 1.1E-05 3.6E-10 84.5 5.0 72 326-405 124-197 (331)
102 1ye8_A Protein THEP1, hypothet 97.5 0.00056 1.9E-08 65.0 10.5 26 327-352 2-27 (178)
103 3cmu_A Protein RECA, recombina 97.4 0.00013 4.4E-09 91.6 7.2 104 323-430 1425-1548(2050)
104 3trf_A Shikimate kinase, SK; a 97.3 0.00015 5.3E-09 67.9 4.1 33 326-358 6-38 (185)
105 1qhx_A CPT, protein (chloramph 97.3 0.00018 6E-09 67.0 4.5 35 326-360 4-38 (178)
106 3r20_A Cytidylate kinase; stru 97.1 0.00042 1.4E-08 69.1 6.0 101 325-427 9-120 (233)
107 3vaa_A Shikimate kinase, SK; s 97.1 0.0003 1E-08 67.3 4.1 33 326-358 26-58 (199)
108 1ly1_A Polynucleotide kinase; 97.1 0.0013 4.5E-08 60.7 8.3 32 326-357 3-35 (181)
109 1zuh_A Shikimate kinase; alpha 97.1 0.00031 1.1E-08 65.0 3.8 32 326-357 8-39 (168)
110 2iyv_A Shikimate kinase, SK; t 97.1 0.00034 1.2E-08 65.6 4.1 33 326-358 3-35 (184)
111 1via_A Shikimate kinase; struc 97.1 0.00031 1E-08 65.6 3.8 32 326-357 5-36 (175)
112 3upu_A ATP-dependent DNA helic 97.1 0.00064 2.2E-08 73.8 6.9 24 326-349 46-69 (459)
113 2r2a_A Uncharacterized protein 97.0 0.00047 1.6E-08 67.0 5.1 23 326-348 6-28 (199)
114 3kb2_A SPBC2 prophage-derived 97.0 0.00036 1.2E-08 64.1 4.0 33 326-358 2-34 (173)
115 3iij_A Coilin-interacting nucl 97.0 0.00045 1.5E-08 64.6 4.1 32 326-357 12-43 (180)
116 1kag_A SKI, shikimate kinase I 96.9 0.00048 1.6E-08 63.7 3.9 31 326-356 5-35 (173)
117 3zvl_A Bifunctional polynucleo 96.9 0.003 1E-07 67.8 10.6 34 325-358 258-291 (416)
118 2rhm_A Putative kinase; P-loop 96.9 0.0005 1.7E-08 64.5 3.8 33 326-358 6-38 (193)
119 3t61_A Gluconokinase; PSI-biol 96.9 0.00075 2.6E-08 64.4 4.8 34 325-358 18-51 (202)
120 2cdn_A Adenylate kinase; phosp 96.9 0.00068 2.3E-08 64.6 4.3 32 326-357 21-52 (201)
121 1y63_A LMAJ004144AAA protein; 96.8 0.00055 1.9E-08 64.7 3.5 32 326-357 11-43 (184)
122 2orw_A Thymidine kinase; TMTK, 96.8 0.00041 1.4E-08 66.3 2.6 23 326-348 4-26 (184)
123 1e6c_A Shikimate kinase; phosp 96.8 0.00065 2.2E-08 62.7 3.8 32 326-357 3-34 (173)
124 1tev_A UMP-CMP kinase; ploop, 96.8 0.00062 2.1E-08 63.7 3.6 32 326-357 4-35 (196)
125 2c95_A Adenylate kinase 1; tra 96.8 0.00069 2.4E-08 63.7 3.9 32 326-357 10-41 (196)
126 3lw7_A Adenylate kinase relate 96.8 0.00065 2.2E-08 62.0 3.6 31 326-357 2-32 (179)
127 2fz4_A DNA repair protein RAD2 96.8 0.0034 1.2E-07 62.1 8.7 32 326-357 109-140 (237)
128 2ze6_A Isopentenyl transferase 96.8 0.00078 2.7E-08 67.4 4.0 33 327-359 3-35 (253)
129 2b8t_A Thymidine kinase; deoxy 96.8 0.0032 1.1E-07 62.2 8.4 24 326-349 13-36 (223)
130 1zak_A Adenylate kinase; ATP:A 96.8 0.00077 2.6E-08 65.4 3.8 32 326-357 6-37 (222)
131 1aky_A Adenylate kinase; ATP:A 96.7 0.00086 2.9E-08 64.9 4.0 31 326-356 5-35 (220)
132 2bwj_A Adenylate kinase 5; pho 96.7 0.00083 2.9E-08 63.3 3.8 32 326-357 13-44 (199)
133 2pt5_A Shikimate kinase, SK; a 96.7 0.00089 3E-08 61.5 3.8 31 327-357 2-32 (168)
134 3cm0_A Adenylate kinase; ATP-b 96.7 0.0008 2.7E-08 62.9 3.5 32 326-357 5-36 (186)
135 1qf9_A UMP/CMP kinase, protein 96.7 0.00091 3.1E-08 62.4 3.6 32 326-357 7-38 (194)
136 3dl0_A Adenylate kinase; phosp 96.7 0.00095 3.2E-08 64.3 3.8 31 327-357 2-32 (216)
137 1kht_A Adenylate kinase; phosp 96.7 0.00081 2.8E-08 62.8 3.2 25 326-350 4-28 (192)
138 3fb4_A Adenylate kinase; psych 96.6 0.0011 3.7E-08 63.8 3.9 31 327-357 2-32 (216)
139 2ehv_A Hypothetical protein PH 96.6 0.0061 2.1E-07 59.3 9.3 22 325-346 30-51 (251)
140 3e1s_A Exodeoxyribonuclease V, 96.6 0.0031 1.1E-07 70.7 8.1 24 326-349 205-228 (574)
141 1ak2_A Adenylate kinase isoenz 96.6 0.0011 3.8E-08 65.0 4.0 32 326-357 17-48 (233)
142 1zd8_A GTP:AMP phosphotransfer 96.6 0.001 3.6E-08 64.7 3.7 32 326-357 8-39 (227)
143 3dm5_A SRP54, signal recogniti 96.6 0.045 1.6E-06 59.4 16.6 25 325-349 100-124 (443)
144 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0046 1.6E-07 61.8 8.2 37 326-362 5-44 (260)
145 3be4_A Adenylate kinase; malar 96.6 0.0013 4.3E-08 63.9 3.9 32 326-357 6-37 (217)
146 2vli_A Antibiotic resistance p 96.6 0.001 3.4E-08 62.0 3.0 29 326-354 6-34 (183)
147 1ukz_A Uridylate kinase; trans 96.6 0.0012 4.3E-08 62.7 3.7 32 326-357 16-47 (203)
148 1knq_A Gluconate kinase; ALFA/ 96.5 0.0015 5E-08 60.7 4.1 32 326-357 9-40 (175)
149 1zp6_A Hypothetical protein AT 96.5 0.0011 3.8E-08 62.2 2.7 36 326-361 10-45 (191)
150 3tlx_A Adenylate kinase 2; str 96.5 0.0015 5E-08 64.9 3.7 32 326-357 30-61 (243)
151 1e4v_A Adenylate kinase; trans 96.5 0.0016 5.4E-08 62.8 3.8 30 327-356 2-31 (214)
152 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.011 3.7E-07 56.5 9.7 24 326-349 24-47 (235)
153 4eun_A Thermoresistant glucoki 96.4 0.002 6.9E-08 61.5 4.4 30 326-355 30-59 (200)
154 2cvh_A DNA repair and recombin 96.4 0.0051 1.7E-07 58.7 7.1 33 326-358 21-53 (220)
155 1n0w_A DNA repair protein RAD5 96.4 0.003 1E-07 61.2 5.5 23 326-348 25-47 (243)
156 3sr0_A Adenylate kinase; phosp 96.4 0.0018 6.3E-08 63.0 3.8 29 327-355 2-30 (206)
157 2p5t_B PEZT; postsegregational 96.4 0.0036 1.2E-07 62.3 5.9 37 325-361 32-68 (253)
158 3hr8_A Protein RECA; alpha and 96.4 0.0037 1.3E-07 66.1 6.2 76 325-404 61-153 (356)
159 1cke_A CK, MSSA, protein (cyti 96.4 0.002 7E-08 62.1 3.9 31 326-356 6-36 (227)
160 3umf_A Adenylate kinase; rossm 96.3 0.0019 6.4E-08 63.6 3.6 29 326-354 30-58 (217)
161 1gvn_B Zeta; postsegregational 96.3 0.0042 1.5E-07 63.3 6.3 36 325-360 33-68 (287)
162 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0024 8.3E-08 67.5 4.2 33 326-358 25-57 (359)
163 2pez_A Bifunctional 3'-phospho 96.2 0.0029 1E-07 59.0 4.2 36 326-361 6-44 (179)
164 2if2_A Dephospho-COA kinase; a 96.2 0.0023 7.9E-08 60.9 3.5 31 327-358 3-33 (204)
165 3ake_A Cytidylate kinase; CMP 96.2 0.0029 1E-07 59.9 4.2 31 327-357 4-34 (208)
166 1svm_A Large T antigen; AAA+ f 96.2 0.0026 8.9E-08 67.7 4.2 62 325-404 169-230 (377)
167 2pbr_A DTMP kinase, thymidylat 96.2 0.0028 9.6E-08 59.2 4.0 31 327-357 2-35 (195)
168 2xb4_A Adenylate kinase; ATP-b 96.2 0.0024 8.3E-08 62.2 3.6 30 327-356 2-31 (223)
169 2jaq_A Deoxyguanosine kinase; 96.2 0.0026 8.8E-08 60.0 3.7 29 327-355 2-30 (205)
170 1nks_A Adenylate kinase; therm 96.2 0.0017 5.9E-08 60.5 2.3 24 327-350 3-26 (194)
171 3crm_A TRNA delta(2)-isopenten 96.2 0.0023 7.7E-08 66.9 3.3 35 326-360 6-40 (323)
172 2r8r_A Sensor protein; KDPD, P 96.1 0.074 2.5E-06 52.7 13.7 29 326-354 7-38 (228)
173 3nwj_A ATSK2; P loop, shikimat 96.1 0.0033 1.1E-07 63.1 3.9 33 326-358 49-81 (250)
174 1qzm_A ATP-dependent protease 96.1 0.019 6.4E-07 49.2 7.9 68 533-604 2-69 (94)
175 3uie_A Adenylyl-sulfate kinase 96.1 0.0041 1.4E-07 59.4 4.2 36 326-361 26-64 (200)
176 1uf9_A TT1252 protein; P-loop, 96.0 0.0031 1.1E-07 59.5 3.3 32 325-357 8-39 (203)
177 1jjv_A Dephospho-COA kinase; P 96.0 0.003 1E-07 60.2 3.2 31 326-357 3-33 (206)
178 2wwf_A Thymidilate kinase, put 96.0 0.0025 8.4E-08 60.7 2.3 31 325-355 10-40 (212)
179 2zr9_A Protein RECA, recombina 96.0 0.0062 2.1E-07 64.0 5.5 80 325-404 61-153 (349)
180 2z0h_A DTMP kinase, thymidylat 95.9 0.0045 1.5E-07 58.1 3.9 29 328-356 3-34 (197)
181 2v54_A DTMP kinase, thymidylat 95.9 0.0034 1.2E-07 59.4 3.0 31 326-356 5-36 (204)
182 3kl4_A SRP54, signal recogniti 95.9 0.026 8.9E-07 61.1 10.2 25 325-349 97-121 (433)
183 2grj_A Dephospho-COA kinase; T 95.9 0.0044 1.5E-07 59.6 3.7 33 326-358 13-45 (192)
184 1m7g_A Adenylylsulfate kinase; 95.8 0.014 4.9E-07 56.0 7.0 36 326-361 26-65 (211)
185 1nn5_A Similar to deoxythymidy 95.8 0.0032 1.1E-07 60.0 2.3 28 326-353 10-37 (215)
186 3a8t_A Adenylate isopentenyltr 95.8 0.0032 1.1E-07 66.1 2.3 35 326-360 41-75 (339)
187 2h92_A Cytidylate kinase; ross 95.8 0.0057 2E-07 58.7 4.0 33 326-358 4-36 (219)
188 1q3t_A Cytidylate kinase; nucl 95.8 0.0059 2E-07 59.8 4.1 33 325-357 16-48 (236)
189 1uj2_A Uridine-cytidine kinase 95.7 0.0057 1.9E-07 60.7 3.9 28 326-353 23-50 (252)
190 2bbw_A Adenylate kinase 4, AK4 95.7 0.0062 2.1E-07 60.0 4.1 30 325-354 27-56 (246)
191 2plr_A DTMP kinase, probable t 95.7 0.0053 1.8E-07 58.1 3.5 27 326-352 5-31 (213)
192 1vht_A Dephospho-COA kinase; s 95.7 0.0052 1.8E-07 59.2 3.4 31 326-357 5-35 (218)
193 1ltq_A Polynucleotide kinase; 95.6 0.0052 1.8E-07 62.1 3.0 32 326-357 3-35 (301)
194 1w36_D RECD, exodeoxyribonucle 95.6 0.017 5.9E-07 65.0 7.5 24 326-349 165-188 (608)
195 4e22_A Cytidylate kinase; P-lo 95.6 0.0074 2.5E-07 60.1 4.0 30 326-355 28-57 (252)
196 2z43_A DNA repair and recombin 95.6 0.013 4.5E-07 60.5 6.1 25 325-349 107-131 (324)
197 1u94_A RECA protein, recombina 95.5 0.022 7.4E-07 60.1 7.4 35 324-358 62-99 (356)
198 2dr3_A UPF0273 protein PH0284; 95.4 0.026 9E-07 54.5 7.4 24 326-349 24-47 (247)
199 2yvu_A Probable adenylyl-sulfa 95.4 0.01 3.5E-07 55.6 4.2 36 325-360 13-51 (186)
200 3cmu_A Protein RECA, recombina 95.4 0.017 5.8E-07 72.9 7.3 82 323-407 1079-1176(2050)
201 3foz_A TRNA delta(2)-isopenten 95.4 0.0074 2.5E-07 62.6 3.4 36 326-361 11-46 (316)
202 1pzn_A RAD51, DNA repair and r 95.4 0.012 4.1E-07 61.7 5.0 26 324-349 130-155 (349)
203 3fdi_A Uncharacterized protein 95.4 0.0098 3.4E-07 57.4 4.0 30 326-355 7-36 (201)
204 2qt1_A Nicotinamide riboside k 95.4 0.0061 2.1E-07 58.2 2.4 32 326-357 22-54 (207)
205 2qor_A Guanylate kinase; phosp 95.3 0.0087 3E-07 57.2 3.5 25 326-350 13-37 (204)
206 1g5t_A COB(I)alamin adenosyltr 95.3 0.076 2.6E-06 51.4 10.0 78 325-402 28-132 (196)
207 3jvv_A Twitching mobility prot 95.3 0.021 7E-07 60.3 6.3 24 326-349 124-147 (356)
208 3exa_A TRNA delta(2)-isopenten 95.2 0.0089 3E-07 62.2 3.3 36 326-361 4-39 (322)
209 3d3q_A TRNA delta(2)-isopenten 95.1 0.0098 3.3E-07 62.5 3.4 34 326-359 8-41 (340)
210 1xp8_A RECA protein, recombina 95.1 0.016 5.6E-07 61.3 5.0 77 324-404 73-166 (366)
211 2f6r_A COA synthase, bifunctio 95.1 0.01 3.6E-07 60.1 3.3 32 325-357 75-106 (281)
212 3asz_A Uridine kinase; cytidin 95.1 0.011 3.8E-07 56.3 3.3 30 326-355 7-38 (211)
213 3b6e_A Interferon-induced heli 95.0 0.026 8.9E-07 53.3 5.8 23 326-348 49-71 (216)
214 2bdt_A BH3686; alpha-beta prot 95.0 0.013 4.3E-07 55.0 3.5 26 326-351 3-28 (189)
215 1kgd_A CASK, peripheral plasma 95.0 0.013 4.5E-07 54.9 3.5 25 326-350 6-30 (180)
216 2j41_A Guanylate kinase; GMP, 94.9 0.011 3.8E-07 55.8 2.8 24 326-349 7-30 (207)
217 3eph_A TRNA isopentenyltransfe 94.9 0.013 4.5E-07 62.9 3.4 34 326-359 3-36 (409)
218 3tr0_A Guanylate kinase, GMP k 94.8 0.015 5.1E-07 54.9 3.4 24 326-349 8-31 (205)
219 3tau_A Guanylate kinase, GMP k 94.8 0.012 4.3E-07 56.5 2.9 26 325-350 8-33 (208)
220 1v5w_A DMC1, meiotic recombina 94.8 0.027 9.1E-07 58.8 5.4 24 325-348 122-145 (343)
221 3io5_A Recombination and repai 94.8 0.016 5.5E-07 60.4 3.7 78 326-404 29-125 (333)
222 2axn_A 6-phosphofructo-2-kinas 94.7 0.042 1.5E-06 60.7 7.2 29 325-353 35-63 (520)
223 1vma_A Cell division protein F 94.7 0.056 1.9E-06 55.8 7.5 25 325-349 104-128 (306)
224 3a00_A Guanylate kinase, GMP k 94.7 0.017 5.9E-07 54.3 3.4 25 326-350 2-26 (186)
225 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.029 1E-06 58.3 5.4 25 326-350 172-196 (330)
226 1bif_A 6-phosphofructo-2-kinas 94.6 0.058 2E-06 58.6 7.8 29 325-353 39-67 (469)
227 3c8u_A Fructokinase; YP_612366 94.6 0.018 6.1E-07 55.2 3.3 25 326-350 23-47 (208)
228 1sky_E F1-ATPase, F1-ATP synth 94.5 0.028 9.7E-07 61.4 4.9 24 326-349 152-175 (473)
229 3lda_A DNA repair protein RAD5 94.4 0.039 1.3E-06 59.1 5.8 25 324-348 177-201 (400)
230 3e70_C DPA, signal recognition 94.4 0.037 1.2E-06 57.7 5.4 26 324-349 128-153 (328)
231 1xx6_A Thymidine kinase; NESG, 94.4 0.054 1.9E-06 52.0 6.2 24 326-349 9-32 (191)
232 3b9q_A Chloroplast SRP recepto 94.3 0.035 1.2E-06 57.1 5.0 25 325-349 100-124 (302)
233 2qmh_A HPR kinase/phosphorylas 94.3 0.016 5.6E-07 56.4 2.3 42 320-362 29-70 (205)
234 3cmw_A Protein RECA, recombina 94.2 0.031 1.1E-06 69.6 5.1 81 324-404 731-824 (1706)
235 3hdt_A Putative kinase; struct 94.2 0.025 8.7E-07 55.6 3.6 31 326-356 15-45 (223)
236 2i1q_A DNA repair and recombin 94.2 0.028 9.5E-07 57.7 4.0 25 324-348 97-121 (322)
237 1w4r_A Thymidine kinase; type 94.2 0.044 1.5E-06 53.0 5.2 32 326-357 21-55 (195)
238 1lvg_A Guanylate kinase, GMP k 94.2 0.026 8.7E-07 54.0 3.4 25 326-350 5-29 (198)
239 3gmt_A Adenylate kinase; ssgci 94.1 0.029 9.8E-07 55.7 3.7 31 326-356 9-39 (230)
240 1gtv_A TMK, thymidylate kinase 94.0 0.014 4.9E-07 55.4 1.4 24 327-350 2-25 (214)
241 1rz3_A Hypothetical protein rb 94.0 0.041 1.4E-06 52.5 4.5 31 326-356 23-56 (201)
242 1x6v_B Bifunctional 3'-phospho 94.0 0.032 1.1E-06 63.1 4.3 36 326-361 53-91 (630)
243 1ex7_A Guanylate kinase; subst 94.0 0.033 1.1E-06 53.4 3.8 25 326-350 2-26 (186)
244 2xxa_A Signal recognition part 94.0 0.85 2.9E-05 49.2 15.2 34 325-358 100-137 (433)
245 1odf_A YGR205W, hypothetical 3 93.9 0.068 2.3E-06 54.6 6.2 25 326-350 32-56 (290)
246 2j9r_A Thymidine kinase; TK1, 93.9 0.14 4.8E-06 50.2 8.2 32 326-357 29-63 (214)
247 1j8m_F SRP54, signal recogniti 93.9 0.099 3.4E-06 53.6 7.4 25 325-349 98-122 (297)
248 1zu4_A FTSY; GTPase, signal re 93.9 0.089 3E-06 54.5 7.1 25 325-349 105-129 (320)
249 2jeo_A Uridine-cytidine kinase 93.7 0.032 1.1E-06 54.9 3.2 27 326-352 26-52 (245)
250 3vkw_A Replicase large subunit 93.7 0.13 4.6E-06 55.7 8.3 23 325-347 161-183 (446)
251 1znw_A Guanylate kinase, GMP k 93.7 0.037 1.3E-06 53.0 3.5 25 326-350 21-45 (207)
252 4a74_A DNA repair and recombin 93.6 0.034 1.2E-06 53.1 3.2 24 326-349 26-49 (231)
253 2j37_W Signal recognition part 93.5 0.21 7.3E-06 55.0 9.7 34 325-358 101-137 (504)
254 1z6g_A Guanylate kinase; struc 93.5 0.042 1.4E-06 53.3 3.5 24 326-349 24-47 (218)
255 3ney_A 55 kDa erythrocyte memb 93.4 0.042 1.5E-06 53.2 3.5 26 325-350 19-44 (197)
256 1tf7_A KAIC; homohexamer, hexa 93.4 0.17 5.8E-06 55.7 8.7 24 326-349 40-65 (525)
257 2zts_A Putative uncharacterize 93.4 0.19 6.6E-06 48.3 8.2 23 325-347 30-52 (251)
258 4eaq_A DTMP kinase, thymidylat 93.4 0.042 1.4E-06 54.0 3.3 25 326-350 27-51 (229)
259 2og2_A Putative signal recogni 93.3 0.11 3.6E-06 54.9 6.4 25 325-349 157-181 (359)
260 1a7j_A Phosphoribulokinase; tr 93.2 0.023 7.8E-07 58.1 1.1 25 326-350 6-30 (290)
261 1htw_A HI0065; nucleotide-bind 93.1 0.05 1.7E-06 50.5 3.3 24 326-349 34-57 (158)
262 3lnc_A Guanylate kinase, GMP k 92.9 0.038 1.3E-06 53.7 2.2 24 326-349 28-52 (231)
263 2iut_A DNA translocase FTSK; n 92.9 0.55 1.9E-05 52.5 11.7 34 326-359 215-255 (574)
264 1g8f_A Sulfate adenylyltransfe 92.8 0.066 2.2E-06 59.2 4.2 26 326-351 396-421 (511)
265 3kta_A Chromosome segregation 92.7 0.074 2.5E-06 49.3 3.8 30 321-350 22-51 (182)
266 1s96_A Guanylate kinase, GMP k 92.7 0.063 2.2E-06 52.5 3.4 25 326-350 17-41 (219)
267 2yhs_A FTSY, cell division pro 92.6 0.11 3.9E-06 57.0 5.8 25 325-349 293-317 (503)
268 1sq5_A Pantothenate kinase; P- 92.6 0.066 2.3E-06 54.8 3.6 25 326-350 81-105 (308)
269 2i3b_A HCR-ntpase, human cance 92.5 0.064 2.2E-06 51.2 3.2 24 326-349 2-25 (189)
270 2eyu_A Twitching motility prot 92.5 0.062 2.1E-06 54.0 3.3 24 326-349 26-49 (261)
271 4gp7_A Metallophosphoesterase; 92.5 0.066 2.2E-06 49.8 3.2 20 326-345 10-29 (171)
272 2v9p_A Replication protein E1; 92.5 0.069 2.4E-06 55.1 3.6 25 326-350 127-151 (305)
273 1m8p_A Sulfate adenylyltransfe 92.4 0.064 2.2E-06 60.1 3.4 36 326-361 397-436 (573)
274 3aez_A Pantothenate kinase; tr 92.2 0.07 2.4E-06 55.1 3.2 26 325-350 90-115 (312)
275 3tqc_A Pantothenate kinase; bi 92.2 0.081 2.8E-06 55.0 3.7 26 325-350 92-117 (321)
276 1nlf_A Regulatory protein REPA 92.1 0.08 2.7E-06 53.0 3.5 25 325-349 30-54 (279)
277 4b3f_X DNA-binding protein smu 92.1 0.1 3.5E-06 59.0 4.7 24 326-349 206-230 (646)
278 1cr0_A DNA primase/helicase; R 92.0 0.084 2.9E-06 53.2 3.5 24 326-349 36-59 (296)
279 1rj9_A FTSY, signal recognitio 91.8 0.091 3.1E-06 54.0 3.6 26 324-349 101-126 (304)
280 1p5z_B DCK, deoxycytidine kina 91.8 0.034 1.2E-06 55.2 0.3 29 326-354 25-54 (263)
281 2gks_A Bifunctional SAT/APS ki 91.7 0.26 8.9E-06 54.8 7.4 35 326-360 373-410 (546)
282 2ocp_A DGK, deoxyguanosine kin 91.5 0.089 3E-06 51.4 3.0 25 326-350 3-27 (241)
283 3cr8_A Sulfate adenylyltranfer 91.5 0.084 2.9E-06 58.9 3.1 25 326-350 370-394 (552)
284 3sfz_A APAF-1, apoptotic pepti 91.5 0.27 9.3E-06 58.5 7.7 45 275-348 126-170 (1249)
285 4i1u_A Dephospho-COA kinase; s 91.5 0.11 3.7E-06 50.8 3.5 32 326-358 10-41 (210)
286 1c9k_A COBU, adenosylcobinamid 91.3 0.078 2.7E-06 50.6 2.3 32 328-360 2-33 (180)
287 2px0_A Flagellar biosynthesis 91.2 0.11 3.8E-06 53.1 3.5 26 324-349 104-129 (296)
288 2f1r_A Molybdopterin-guanine d 91.2 0.084 2.9E-06 49.7 2.3 24 326-349 3-26 (171)
289 1lw7_A Transcriptional regulat 91.2 0.12 4.1E-06 54.0 3.7 27 326-352 171-197 (365)
290 4edh_A DTMP kinase, thymidylat 91.1 0.11 3.9E-06 50.4 3.2 25 326-350 7-31 (213)
291 1z6t_A APAF-1, apoptotic prote 91.1 0.17 5.7E-06 55.9 4.9 44 275-347 126-169 (591)
292 2xau_A PRE-mRNA-splicing facto 91.1 0.5 1.7E-05 54.6 9.1 22 326-347 110-131 (773)
293 2ewv_A Twitching motility prot 90.9 0.11 3.9E-06 54.8 3.2 24 326-349 137-160 (372)
294 2q6t_A DNAB replication FORK h 90.7 0.21 7.1E-06 53.8 5.1 25 325-349 200-224 (444)
295 1xjc_A MOBB protein homolog; s 90.7 0.15 5E-06 48.2 3.4 24 326-349 5-28 (169)
296 1p9r_A General secretion pathw 90.6 0.16 5.3E-06 54.7 4.0 25 326-350 168-192 (418)
297 2ffh_A Protein (FFH); SRP54, s 90.6 0.34 1.2E-05 52.3 6.7 26 324-349 97-122 (425)
298 2a5y_B CED-4; apoptosis; HET: 90.6 0.24 8.2E-06 54.7 5.6 44 276-347 131-174 (549)
299 3v9p_A DTMP kinase, thymidylat 90.5 0.11 3.7E-06 51.3 2.4 25 326-350 26-50 (227)
300 3b85_A Phosphate starvation-in 90.4 0.1 3.5E-06 50.6 2.1 23 326-348 23-45 (208)
301 2pcj_A ABC transporter, lipopr 90.3 0.12 4E-06 50.6 2.5 24 326-349 31-54 (224)
302 3tif_A Uncharacterized ABC tra 90.3 0.12 4.2E-06 50.9 2.6 25 325-349 31-55 (235)
303 3ice_A Transcription terminati 90.3 0.083 2.8E-06 56.5 1.5 24 326-349 175-198 (422)
304 2fwr_A DNA repair protein RAD2 90.3 0.52 1.8E-05 50.4 7.8 32 326-357 109-140 (472)
305 1np6_A Molybdopterin-guanine d 90.0 0.16 5.6E-06 47.8 3.2 24 326-349 7-30 (174)
306 2gza_A Type IV secretion syste 90.0 0.12 4.1E-06 54.2 2.5 25 326-350 176-200 (361)
307 2onk_A Molybdate/tungstate ABC 90.0 0.14 4.8E-06 50.7 2.8 24 326-349 25-48 (240)
308 2oap_1 GSPE-2, type II secreti 90.0 0.17 5.8E-06 55.8 3.7 25 326-350 261-285 (511)
309 2ged_A SR-beta, signal recogni 89.9 0.27 9.1E-06 45.4 4.5 23 326-348 49-71 (193)
310 3tmk_A Thymidylate kinase; pho 89.9 0.16 5.6E-06 49.6 3.2 26 326-351 6-31 (216)
311 3lv8_A DTMP kinase, thymidylat 89.9 0.18 6E-06 50.1 3.4 24 326-349 28-51 (236)
312 2cbz_A Multidrug resistance-as 89.8 0.14 4.8E-06 50.5 2.6 25 325-349 31-55 (237)
313 3sop_A Neuronal-specific septi 89.7 0.16 5.5E-06 51.2 3.1 24 326-349 3-26 (270)
314 2gk6_A Regulator of nonsense t 89.7 0.26 8.7E-06 55.5 5.0 24 326-349 196-219 (624)
315 1hv8_A Putative ATP-dependent 89.6 0.51 1.7E-05 47.7 6.8 23 326-348 45-67 (367)
316 2d2e_A SUFC protein; ABC-ATPas 89.5 0.18 6.1E-06 50.1 3.2 24 325-348 29-52 (250)
317 3tqf_A HPR(Ser) kinase; transf 89.5 0.17 5.9E-06 48.2 2.9 36 321-357 12-47 (181)
318 1sgw_A Putative ABC transporte 89.5 0.16 5.4E-06 49.6 2.7 25 325-349 35-59 (214)
319 3e2i_A Thymidine kinase; Zn-bi 89.4 0.2 6.7E-06 49.3 3.3 24 326-349 29-53 (219)
320 1g6h_A High-affinity branched- 89.4 0.16 5.4E-06 50.8 2.6 25 325-349 33-57 (257)
321 1b0u_A Histidine permease; ABC 89.3 0.16 5.4E-06 51.0 2.6 24 326-349 33-56 (262)
322 4tmk_A Protein (thymidylate ki 89.3 0.19 6.5E-06 48.9 3.1 24 326-349 4-27 (213)
323 1oix_A RAS-related protein RAB 89.2 0.19 6.4E-06 47.0 2.9 24 326-349 30-53 (191)
324 1ji0_A ABC transporter; ATP bi 89.2 0.17 5.7E-06 50.0 2.6 25 325-349 32-56 (240)
325 2zu0_C Probable ATP-dependent 89.2 0.19 6.6E-06 50.5 3.1 25 325-349 46-70 (267)
326 2f9l_A RAB11B, member RAS onco 89.1 0.2 6.8E-06 46.9 3.0 24 326-349 6-29 (199)
327 2pze_A Cystic fibrosis transme 89.1 0.17 5.8E-06 49.6 2.6 25 325-349 34-58 (229)
328 3ld9_A DTMP kinase, thymidylat 89.1 0.21 7.1E-06 49.1 3.2 26 326-351 22-47 (223)
329 2ff7_A Alpha-hemolysin translo 89.1 0.17 5.9E-06 50.2 2.6 25 325-349 35-59 (247)
330 4f4c_A Multidrug resistance pr 89.0 1.1 3.7E-05 55.0 10.1 25 325-349 444-468 (1321)
331 2p6r_A Afuhel308 helicase; pro 89.0 0.99 3.4E-05 51.1 9.2 20 325-344 40-59 (702)
332 1mv5_A LMRA, multidrug resista 88.9 0.16 5.5E-06 50.2 2.3 25 325-349 28-52 (243)
333 4g1u_C Hemin import ATP-bindin 88.9 0.18 6E-06 50.8 2.6 25 325-349 37-61 (266)
334 2olj_A Amino acid ABC transpor 88.9 0.18 6.1E-06 50.7 2.6 24 326-349 51-74 (263)
335 1nrj_B SR-beta, signal recogni 88.8 0.24 8E-06 46.9 3.3 25 325-349 12-36 (218)
336 3gfo_A Cobalt import ATP-bindi 88.8 0.18 6.3E-06 51.0 2.6 25 325-349 34-58 (275)
337 3fvq_A Fe(3+) IONS import ATP- 88.7 0.19 6.4E-06 53.1 2.8 24 326-349 31-54 (359)
338 2qi9_C Vitamin B12 import ATP- 88.7 0.19 6.4E-06 50.1 2.6 24 326-349 27-50 (249)
339 2ghi_A Transport protein; mult 88.7 0.19 6.4E-06 50.4 2.6 25 325-349 46-70 (260)
340 2dyk_A GTP-binding protein; GT 88.7 0.22 7.4E-06 44.2 2.8 23 326-348 2-24 (161)
341 2ixe_A Antigen peptide transpo 88.6 0.19 6.5E-06 50.7 2.6 24 326-349 46-69 (271)
342 2ihy_A ABC transporter, ATP-bi 88.5 0.19 6.6E-06 50.9 2.6 25 325-349 47-71 (279)
343 1vpl_A ABC transporter, ATP-bi 88.4 0.2 6.8E-06 50.2 2.6 25 325-349 41-65 (256)
344 2yz2_A Putative ABC transporte 88.4 0.2 6.9E-06 50.3 2.6 25 325-349 33-57 (266)
345 1wp9_A ATP-dependent RNA helic 88.3 0.7 2.4E-05 48.1 6.9 23 327-349 25-47 (494)
346 2v3c_C SRP54, signal recogniti 88.3 0.19 6.5E-06 54.3 2.5 25 325-349 99-123 (432)
347 1z2a_A RAS-related protein RAB 88.2 0.26 9E-06 43.8 3.0 23 326-348 6-28 (168)
348 3d31_A Sulfate/molybdate ABC t 88.2 0.23 7.7E-06 52.2 2.9 24 326-349 27-50 (348)
349 1z47_A CYSA, putative ABC-tran 88.1 0.24 8.3E-06 52.1 3.2 25 325-349 41-65 (355)
350 4ag6_A VIRB4 ATPase, type IV s 88.1 0.35 1.2E-05 50.8 4.5 34 324-357 34-70 (392)
351 2nq2_C Hypothetical ABC transp 88.1 0.21 7.2E-06 49.8 2.6 25 325-349 31-55 (253)
352 1u8z_A RAS-related protein RAL 88.0 0.25 8.6E-06 43.7 2.8 23 326-348 5-27 (168)
353 2ce2_X GTPase HRAS; signaling 88.0 0.27 9.1E-06 43.4 2.9 23 326-348 4-26 (166)
354 3thx_B DNA mismatch repair pro 88.0 0.57 2E-05 55.2 6.5 24 325-348 673-696 (918)
355 3rlf_A Maltose/maltodextrin im 88.0 0.23 7.8E-06 52.8 2.8 24 326-349 30-53 (381)
356 2yyz_A Sugar ABC transporter, 87.9 0.26 8.8E-06 52.0 3.2 24 326-349 30-53 (359)
357 2it1_A 362AA long hypothetical 87.8 0.26 8.8E-06 52.0 3.1 24 326-349 30-53 (362)
358 2lkc_A Translation initiation 87.8 0.35 1.2E-05 43.7 3.7 23 325-347 8-30 (178)
359 2wjy_A Regulator of nonsense t 87.8 0.4 1.4E-05 55.7 5.0 24 326-349 372-395 (800)
360 2wsm_A Hydrogenase expression/ 87.7 0.53 1.8E-05 44.5 5.1 25 326-350 31-55 (221)
361 1g29_1 MALK, maltose transport 87.7 0.27 9.1E-06 52.1 3.2 25 325-349 29-53 (372)
362 1v43_A Sugar-binding transport 87.6 0.27 9.2E-06 52.1 3.1 24 326-349 38-61 (372)
363 1kao_A RAP2A; GTP-binding prot 87.6 0.3 1E-05 43.2 3.0 23 326-348 4-26 (167)
364 2v6i_A RNA helicase; membrane, 87.6 0.66 2.3E-05 49.6 6.2 17 326-342 3-19 (431)
365 2npi_A Protein CLP1; CLP1-PCF1 87.4 0.27 9.1E-06 53.5 3.0 24 326-349 139-162 (460)
366 4f4c_A Multidrug resistance pr 87.4 0.45 1.5E-05 58.3 5.3 25 325-349 1105-1129(1321)
367 1ek0_A Protein (GTP-binding pr 87.3 0.27 9.2E-06 43.8 2.6 23 326-348 4-26 (170)
368 2pjz_A Hypothetical protein ST 87.3 0.23 7.9E-06 49.9 2.3 25 325-349 30-54 (263)
369 4hlc_A DTMP kinase, thymidylat 87.1 0.33 1.1E-05 46.8 3.2 23 327-349 4-26 (205)
370 1oxx_K GLCV, glucose, ABC tran 87.0 0.23 8E-06 52.1 2.3 24 326-349 32-55 (353)
371 1z0j_A RAB-22, RAS-related pro 87.0 0.33 1.1E-05 43.2 3.0 24 326-349 7-30 (170)
372 2wji_A Ferrous iron transport 87.0 0.31 1.1E-05 44.1 2.8 22 326-347 4-25 (165)
373 3nh6_A ATP-binding cassette SU 87.0 0.19 6.6E-06 51.8 1.5 25 325-349 80-104 (306)
374 2zej_A Dardarin, leucine-rich 86.9 0.27 9.1E-06 45.4 2.3 22 326-347 3-24 (184)
375 1f2t_A RAD50 ABC-ATPase; DNA d 86.8 0.39 1.3E-05 43.8 3.3 27 323-349 21-47 (149)
376 1gm5_A RECG; helicase, replica 86.7 1.2 4E-05 51.7 8.1 21 326-346 390-410 (780)
377 3p32_A Probable GTPase RV1496/ 86.7 0.44 1.5E-05 49.6 4.1 24 326-349 80-103 (355)
378 1g16_A RAS-related protein SEC 86.7 0.35 1.2E-05 43.1 2.9 22 326-347 4-25 (170)
379 1wms_A RAB-9, RAB9, RAS-relate 86.7 0.35 1.2E-05 43.6 3.0 23 326-348 8-30 (177)
380 1ky3_A GTP-binding protein YPT 86.6 0.35 1.2E-05 43.6 3.0 23 326-348 9-31 (182)
381 1z08_A RAS-related protein RAB 86.6 0.36 1.2E-05 43.1 3.0 23 326-348 7-29 (170)
382 3ch4_B Pmkase, phosphomevalona 86.6 0.39 1.3E-05 46.6 3.4 28 323-350 9-36 (202)
383 2nzj_A GTP-binding protein REM 86.5 0.35 1.2E-05 43.4 2.8 22 326-347 5-26 (175)
384 1r2q_A RAS-related protein RAB 86.4 0.38 1.3E-05 42.7 3.0 22 326-347 7-28 (170)
385 2vp4_A Deoxynucleoside kinase; 86.4 0.2 6.7E-06 48.7 1.2 23 326-348 21-43 (230)
386 3gd7_A Fusion complex of cysti 86.3 0.34 1.2E-05 51.6 3.1 25 325-349 47-71 (390)
387 3bc1_A RAS-related protein RAB 86.3 0.38 1.3E-05 43.8 3.0 23 326-348 12-34 (195)
388 1c1y_A RAS-related protein RAP 86.3 0.39 1.3E-05 42.6 3.0 23 326-348 4-26 (167)
389 2bbs_A Cystic fibrosis transme 86.2 0.31 1.1E-05 49.7 2.6 25 325-349 64-88 (290)
390 2wjg_A FEOB, ferrous iron tran 86.1 0.37 1.3E-05 44.1 2.9 23 326-348 8-30 (188)
391 3bh0_A DNAB-like replicative h 86.1 0.43 1.5E-05 48.9 3.6 25 325-349 68-92 (315)
392 3q72_A GTP-binding protein RAD 86.1 0.39 1.3E-05 42.8 2.9 21 326-346 3-23 (166)
393 2erx_A GTP-binding protein DI- 86.0 0.38 1.3E-05 42.8 2.8 22 326-347 4-25 (172)
394 1dek_A Deoxynucleoside monopho 86.0 0.39 1.3E-05 47.8 3.1 28 327-354 3-30 (241)
395 3q85_A GTP-binding protein REM 86.0 0.39 1.3E-05 42.9 2.9 21 326-346 3-23 (169)
396 2h57_A ADP-ribosylation factor 86.0 0.28 9.7E-06 45.2 2.0 24 325-348 21-44 (190)
397 1tf7_A KAIC; homohexamer, hexa 85.9 0.4 1.4E-05 52.7 3.5 24 326-349 282-305 (525)
398 1ls1_A Signal recognition part 85.9 0.42 1.4E-05 48.7 3.4 26 324-349 97-122 (295)
399 1r8s_A ADP-ribosylation factor 85.9 0.42 1.4E-05 42.5 3.0 23 327-349 2-24 (164)
400 2zj8_A DNA helicase, putative 85.9 1.3 4.3E-05 50.4 7.7 19 325-343 39-57 (720)
401 3hjn_A DTMP kinase, thymidylat 85.8 0.43 1.5E-05 45.6 3.2 22 328-349 3-24 (197)
402 2www_A Methylmalonic aciduria 85.8 1.3 4.4E-05 46.1 7.1 24 326-349 75-98 (349)
403 1z0f_A RAB14, member RAS oncog 85.7 0.42 1.5E-05 42.9 3.0 23 326-348 16-38 (179)
404 1upt_A ARL1, ADP-ribosylation 85.7 0.46 1.6E-05 42.4 3.2 22 326-347 8-29 (171)
405 2y8e_A RAB-protein 6, GH09086P 85.7 0.42 1.4E-05 43.0 2.9 23 326-348 15-37 (179)
406 3con_A GTPase NRAS; structural 85.5 0.43 1.5E-05 43.8 3.0 23 326-348 22-44 (190)
407 2a9k_A RAS-related protein RAL 85.5 0.44 1.5E-05 43.2 3.0 23 326-348 19-41 (187)
408 2fn4_A P23, RAS-related protei 85.5 0.43 1.5E-05 43.0 2.9 23 326-348 10-32 (181)
409 2obl_A ESCN; ATPase, hydrolase 85.4 0.51 1.8E-05 49.3 3.9 26 326-351 72-97 (347)
410 1m2o_B GTP-binding protein SAR 85.4 0.45 1.5E-05 44.3 3.0 22 326-347 24-45 (190)
411 2qm8_A GTPase/ATPase; G protei 85.4 0.43 1.5E-05 49.6 3.2 24 326-349 56-79 (337)
412 4dsu_A GTPase KRAS, isoform 2B 85.3 0.45 1.5E-05 43.3 3.0 23 326-348 5-27 (189)
413 3t1o_A Gliding protein MGLA; G 85.2 0.46 1.6E-05 43.4 3.0 24 326-349 15-38 (198)
414 2hxs_A RAB-26, RAS-related pro 85.2 0.4 1.4E-05 43.2 2.6 22 326-347 7-28 (178)
415 1m7b_A RND3/RHOE small GTP-bin 85.2 0.45 1.5E-05 43.7 2.9 23 326-348 8-30 (184)
416 3clv_A RAB5 protein, putative; 85.1 0.47 1.6E-05 43.4 3.0 23 326-348 8-30 (208)
417 3tw8_B RAS-related protein RAB 85.1 0.42 1.4E-05 43.0 2.6 22 326-347 10-31 (181)
418 2gj8_A MNME, tRNA modification 85.0 0.43 1.5E-05 43.7 2.7 23 326-348 5-27 (172)
419 2oil_A CATX-8, RAS-related pro 85.0 0.47 1.6E-05 43.7 3.0 23 326-348 26-48 (193)
420 2efe_B Small GTP-binding prote 84.9 0.48 1.6E-05 42.8 3.0 23 326-348 13-35 (181)
421 2dpy_A FLII, flagellum-specifi 84.9 0.55 1.9E-05 50.7 3.9 26 326-351 158-183 (438)
422 2bme_A RAB4A, RAS-related prot 84.9 0.47 1.6E-05 43.2 2.9 23 326-348 11-33 (186)
423 1vt4_I APAF-1 related killer D 84.9 0.56 1.9E-05 56.2 4.2 43 275-347 130-172 (1221)
424 3kkq_A RAS-related protein M-R 84.8 0.49 1.7E-05 43.0 3.0 23 326-348 19-41 (183)
425 2r6a_A DNAB helicase, replicat 84.7 0.52 1.8E-05 50.8 3.6 25 325-349 203-227 (454)
426 2hf9_A Probable hydrogenase ni 84.6 0.52 1.8E-05 44.8 3.2 24 326-349 39-62 (226)
427 2g6b_A RAS-related protein RAB 84.6 0.52 1.8E-05 42.6 3.0 23 326-348 11-33 (180)
428 1svi_A GTP-binding protein YSX 84.5 0.51 1.8E-05 43.4 3.0 23 325-347 23-45 (195)
429 1yrb_A ATP(GTP)binding protein 84.5 0.66 2.3E-05 45.2 3.9 24 326-349 15-38 (262)
430 1mh1_A RAC1; GTP-binding, GTPa 84.4 0.53 1.8E-05 42.6 3.0 22 326-347 6-27 (186)
431 4gl2_A Interferon-induced heli 84.3 0.95 3.2E-05 50.9 5.6 23 326-348 23-45 (699)
432 3tkl_A RAS-related protein RAB 84.2 0.54 1.9E-05 43.2 3.0 23 326-348 17-39 (196)
433 2cxx_A Probable GTP-binding pr 84.2 0.49 1.7E-05 43.2 2.7 22 326-347 2-23 (190)
434 3tui_C Methionine import ATP-b 84.2 0.51 1.7E-05 49.9 3.1 25 325-349 54-78 (366)
435 2eyq_A TRCF, transcription-rep 84.2 1.8 6.1E-05 52.3 8.3 21 326-346 625-645 (1151)
436 3bwd_D RAC-like GTP-binding pr 84.1 0.62 2.1E-05 42.1 3.3 23 326-348 9-31 (182)
437 3thx_A DNA mismatch repair pro 84.1 0.77 2.6E-05 54.3 4.9 23 326-348 663-685 (934)
438 2xzl_A ATP-dependent helicase 84.0 0.55 1.9E-05 54.6 3.6 23 325-347 375-397 (802)
439 3qks_A DNA double-strand break 84.0 0.6 2.1E-05 44.6 3.3 30 322-351 20-49 (203)
440 2gf9_A RAS-related protein RAB 83.9 0.57 1.9E-05 43.1 3.0 23 326-348 23-45 (189)
441 3pqc_A Probable GTP-binding pr 83.9 0.59 2E-05 42.7 3.1 23 326-348 24-46 (195)
442 2p67_A LAO/AO transport system 83.8 1.2 4.1E-05 46.1 5.8 24 326-349 57-80 (341)
443 1pui_A ENGB, probable GTP-bind 83.8 0.3 1E-05 45.8 1.1 22 326-347 27-48 (210)
444 2bov_A RAla, RAS-related prote 83.8 0.57 2E-05 43.4 3.0 23 326-348 15-37 (206)
445 1x3s_A RAS-related protein RAB 83.7 0.58 2E-05 42.8 3.0 23 326-348 16-38 (195)
446 4a1f_A DNAB helicase, replicat 83.7 0.65 2.2E-05 48.5 3.7 25 325-349 46-70 (338)
447 1vg8_A RAS-related protein RAB 83.6 0.58 2E-05 43.4 3.0 23 326-348 9-31 (207)
448 3l9o_A ATP-dependent RNA helic 83.6 2.2 7.7E-05 51.3 8.7 21 326-346 200-220 (1108)
449 2atv_A RERG, RAS-like estrogen 83.6 0.59 2E-05 43.3 3.0 23 326-348 29-51 (196)
450 3t5g_A GTP-binding protein RHE 83.5 0.59 2E-05 42.4 2.9 22 326-347 7-28 (181)
451 2qu8_A Putative nucleolar GTP- 83.5 0.6 2.1E-05 44.7 3.1 23 325-347 29-51 (228)
452 3dz8_A RAS-related protein RAB 83.5 0.59 2E-05 43.2 2.9 24 326-349 24-47 (191)
453 1e9r_A Conjugal transfer prote 83.4 0.74 2.5E-05 48.9 4.1 35 325-359 53-90 (437)
454 3k53_A Ferrous iron transport 83.4 0.54 1.8E-05 46.7 2.8 23 326-348 4-26 (271)
455 2fg5_A RAB-22B, RAS-related pr 83.3 0.59 2E-05 43.2 2.9 23 326-348 24-46 (192)
456 1z06_A RAS-related protein RAB 83.2 0.63 2.2E-05 42.8 3.0 23 326-348 21-43 (189)
457 3ihw_A Centg3; RAS, centaurin, 83.1 0.62 2.1E-05 43.1 3.0 24 325-348 20-43 (184)
458 1zd9_A ADP-ribosylation factor 83.1 0.63 2.2E-05 42.9 3.0 23 326-348 23-45 (188)
459 2hup_A RAS-related protein RAB 83.1 0.53 1.8E-05 44.1 2.5 22 326-347 30-51 (201)
460 3c5c_A RAS-like protein 12; GD 83.1 0.63 2.2E-05 43.0 3.0 23 326-348 22-44 (187)
461 2a5j_A RAS-related protein RAB 83.1 0.64 2.2E-05 42.9 3.0 23 326-348 22-44 (191)
462 1f6b_A SAR1; gtpases, N-termin 83.1 0.54 1.8E-05 44.1 2.5 22 326-347 26-47 (198)
463 3reg_A RHO-like small GTPase; 83.0 0.65 2.2E-05 42.9 3.0 23 326-348 24-46 (194)
464 2p5s_A RAS and EF-hand domain 83.0 0.65 2.2E-05 43.2 3.0 23 326-348 29-51 (199)
465 2h17_A ADP-ribosylation factor 82.9 0.54 1.8E-05 43.0 2.4 23 325-347 21-43 (181)
466 1moz_A ARL1, ADP-ribosylation 82.8 0.44 1.5E-05 43.2 1.8 22 325-346 18-39 (183)
467 3oes_A GTPase rhebl1; small GT 82.8 0.64 2.2E-05 43.3 2.9 23 326-348 25-47 (201)
468 2bcg_Y Protein YP2, GTP-bindin 82.8 0.64 2.2E-05 43.4 2.9 23 326-348 9-31 (206)
469 2iwr_A Centaurin gamma 1; ANK 82.7 0.51 1.7E-05 42.7 2.1 23 326-348 8-30 (178)
470 2zpa_A Uncharacterized protein 82.7 0.92 3.2E-05 51.6 4.6 26 326-351 193-218 (671)
471 2gf0_A GTP-binding protein DI- 82.6 0.66 2.2E-05 42.7 2.9 22 326-347 9-30 (199)
472 1zbd_A Rabphilin-3A; G protein 82.6 0.64 2.2E-05 43.2 2.9 23 326-348 9-31 (203)
473 1ksh_A ARF-like protein 2; sma 82.6 0.62 2.1E-05 42.5 2.7 22 326-347 19-40 (186)
474 3rc3_A ATP-dependent RNA helic 82.5 1.4 4.9E-05 50.1 6.2 20 324-343 154-173 (677)
475 1gwn_A RHO-related GTP-binding 82.3 0.68 2.3E-05 43.8 2.9 23 326-348 29-51 (205)
476 2fh5_B SR-beta, signal recogni 82.3 0.73 2.5E-05 43.2 3.1 23 326-348 8-30 (214)
477 3euj_A Chromosome partition pr 82.2 0.67 2.3E-05 50.7 3.2 24 326-349 30-53 (483)
478 3cph_A RAS-related protein SEC 82.2 0.71 2.4E-05 43.0 3.0 23 326-348 21-43 (213)
479 2fv8_A H6, RHO-related GTP-bin 82.1 0.67 2.3E-05 43.5 2.8 23 325-347 25-47 (207)
480 2yv5_A YJEQ protein; hydrolase 82.0 0.74 2.5E-05 46.9 3.2 24 325-349 165-188 (302)
481 2j1l_A RHO-related GTP-binding 82.0 0.61 2.1E-05 44.2 2.5 22 326-347 35-56 (214)
482 2ew1_A RAS-related protein RAB 81.9 0.72 2.4E-05 43.6 2.9 23 326-348 27-49 (201)
483 3lxx_A GTPase IMAP family memb 81.9 0.68 2.3E-05 44.8 2.8 23 326-348 30-52 (239)
484 2v1x_A ATP-dependent DNA helic 81.9 1.2 4.1E-05 49.8 5.2 21 326-346 60-80 (591)
485 1fzq_A ADP-ribosylation factor 81.8 0.66 2.3E-05 42.6 2.6 22 326-347 17-38 (181)
486 3tbk_A RIG-I helicase domain; 81.8 2.7 9.1E-05 45.1 7.8 22 326-347 20-41 (555)
487 3qf7_A RAD50; ABC-ATPase, ATPa 81.8 0.76 2.6E-05 48.2 3.3 27 323-349 21-47 (365)
488 1qhl_A Protein (cell division 81.7 0.36 1.2E-05 47.5 0.7 24 327-350 29-52 (227)
489 1zj6_A ADP-ribosylation factor 81.5 0.74 2.5E-05 42.2 2.8 22 326-347 17-38 (187)
490 2atx_A Small GTP binding prote 81.5 0.77 2.6E-05 42.3 2.9 23 326-348 19-41 (194)
491 2rcn_A Probable GTPase ENGC; Y 81.5 0.76 2.6E-05 48.4 3.2 25 325-349 215-239 (358)
492 1tq4_A IIGP1, interferon-induc 81.3 0.51 1.7E-05 50.7 1.8 24 326-349 70-93 (413)
493 3bgw_A DNAB-like replicative h 81.3 0.97 3.3E-05 48.8 4.0 33 325-357 197-232 (444)
494 2fu5_C RAS-related protein RAB 81.3 0.5 1.7E-05 43.0 1.5 23 326-348 9-31 (183)
495 4bas_A ADP-ribosylation factor 81.3 0.64 2.2E-05 42.8 2.3 23 325-347 17-39 (199)
496 2qnr_A Septin-2, protein NEDD5 81.2 0.64 2.2E-05 47.4 2.4 23 326-348 19-41 (301)
497 3llm_A ATP-dependent RNA helic 81.2 0.81 2.8E-05 44.3 3.1 22 325-346 76-97 (235)
498 2gco_A H9, RHO-related GTP-bin 81.2 0.7 2.4E-05 43.1 2.5 24 325-348 25-48 (201)
499 4aby_A DNA repair protein RECN 81.1 0.48 1.7E-05 49.8 1.6 28 323-350 58-85 (415)
500 3o8b_A HCV NS3 protease/helica 80.9 2.5 8.6E-05 48.0 7.4 21 325-345 232-252 (666)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=100.00 E-value=4.2e-39 Score=341.46 Aligned_cols=325 Identities=59% Similarity=0.985 Sum_probs=258.9
Q ss_pred CCChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHH
Q 007362 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (606)
Q Consensus 261 ~~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~ 340 (606)
+++++++.+.|++.|+||+.+|+.|..++..++++...... ...+..++.++||+||||||||+
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~----------------~~~~~~~~~~vll~GppGtGKT~ 66 (363)
T 3hws_A 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT----------------SNGVELGKSNILLIGPTGSGKTL 66 (363)
T ss_dssp CCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSC----------------SSSCCCCCCCEEEECCTTSSHHH
T ss_pred CCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccc----------------cccccCCCCeEEEECCCCCCHHH
Confidence 56899999999999999999999999999888776542211 11223345899999999999999
Q ss_pred HHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 341 lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
+|++||+.++.+|+.++++++...+|+|+.....+..++..+...+..+.++||||||||++...+...+.+.+.+++.+
T Consensus 67 la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~ 146 (363)
T 3hws_A 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGV 146 (363)
T ss_dssp HHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHH
T ss_pred HHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHH
Confidence 99999999999999999999987778888777788888888877666778899999999999988777777777777889
Q ss_pred HHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcc-cCCCcCcccccccccccchhHh
Q 007362 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD-SSIGFGAPVRANMRAGVTDAAV 499 (606)
Q Consensus 421 q~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~-~~igf~~~~~~~~~~~~~~~~~ 499 (606)
|+.||++|||..+.++..+.+.....+.+++.++|++||+++++.++++++..+... ..+||....... .....
T Consensus 147 ~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~-----~~~~~ 221 (363)
T 3hws_A 147 QQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAK-----SDKAS 221 (363)
T ss_dssp HHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC-----------------CCSC
T ss_pred HHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCcccccccc-----ccchh
Confidence 999999999888777777766666677888999999999999999999999987766 788987654332 12234
Q ss_pred HHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHcc
Q 007362 500 TSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (606)
Q Consensus 500 ~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a 579 (606)
...+++.+.++++.++.|.|+|++||+.++.|.+++.+++.+|+...++.+.+++.+.+...++.+.++++++++|++++
T Consensus 222 ~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 222 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp HHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred hHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhh
Confidence 56788899999999999999999999999999999999999999987777888888888777888999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCC
Q 007362 580 TAKNTGARGLRAILESILTEAMYEVRT 606 (606)
Q Consensus 580 ~~~~~GAR~L~~~Ie~~l~~al~~~~~ 606 (606)
|+.++|+|+|+++|++.+.++++++|+
T Consensus 302 ~~~~~gaR~L~~~ie~~~~~~l~~~~~ 328 (363)
T 3hws_A 302 MARKTGARGLRSIVEAALLDTMYDLPS 328 (363)
T ss_dssp HHTTCTTTTHHHHHHHHHHHHHHSTTT
T ss_pred cCCccCchHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999874
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=100.00 E-value=1.7e-34 Score=307.28 Aligned_cols=338 Identities=51% Similarity=0.867 Sum_probs=240.6
Q ss_pred CCCCChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHH
Q 007362 259 EDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGK 338 (606)
Q Consensus 259 ~~~~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGK 338 (606)
...++++++.+.|++.|+||+++|+.|..++.++|++......-. ...+..+.+.......+.....++||+|||||||
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGK 85 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLK-KQDNQDSNVELEHLEEVELSKSNILLIGPTGSGK 85 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSH
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhh-hccccccccccccccccccCCCCEEEECCCCCCH
Confidence 345789999999999999999999999999988887764321000 0000001111111112333457899999999999
Q ss_pred HHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 339 TLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 339 T~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
|++|+++|+.++.+|+.+++..+...+|+|...+..+..++......+..+.++||||||||++...+.......+.+++
T Consensus 86 T~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 165 (376)
T 1um8_A 86 TLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGE 165 (376)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CH
T ss_pred HHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchH
Confidence 99999999999999999999998877888887677777887777666667788999999999998876655556666677
Q ss_pred HHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhH
Q 007362 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~ 498 (606)
++|+.|+++||+..+.++..+.+.......+++.++|++||+++++.++++.+.++.....+||..+.....
T Consensus 166 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~-------- 237 (376)
T 1um8_A 166 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK-------- 237 (376)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT--------
T ss_pred HHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc--------
Confidence 799999999998888888777777777788889999999999999999999998877777788876654210
Q ss_pred hHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 499 ~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
....+++.+.+.++....|.|+|++||+.++.|++|+.+++..|+...++.+.+++.+.+...+..+.++++++++|+++
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 317 (376)
T 1um8_A 238 EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQL 317 (376)
T ss_dssp TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHH
Confidence 01223344555566677799999999999999999999999999987666777888777766778889999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007362 579 ATAKNTGARGLRAILESILTEAMYEVR 605 (606)
Q Consensus 579 a~~~~~GAR~L~~~Ie~~l~~al~~~~ 605 (606)
+|..+.|+|.|+++|++++.+++++++
T Consensus 318 ~~~~~~~~R~L~~~le~~~~~~~~~~~ 344 (376)
T 1um8_A 318 ALERKTGARGLRAIIEDFCLDIMFDLP 344 (376)
T ss_dssp HHHTTCTGGGHHHHHHHHHHHHHHTGG
T ss_pred hcccccCcHHHHHHHHHHHHHHHhhcc
Confidence 998889999999999999999998765
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=9.9e-33 Score=300.33 Aligned_cols=270 Identities=41% Similarity=0.679 Sum_probs=220.9
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
.+|+++.+.|+++|+||+++|+.|..++.++|++.... .+ -.....+.++||+||||||||++
T Consensus 4 ~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~---~~--------------~~~~~~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQ---EP--------------LRHEVTPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSC---TT--------------TTTTCCCCCEEEECCTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccc---cc--------------cccccCCceEEEEcCCCCCHHHH
Confidence 68999999999999999999999999999888875311 10 01122358999999999999999
Q ss_pred HHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhh-------------------------------------
Q 007362 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF------------------------------------- 384 (606)
Q Consensus 342 AralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~------------------------------------- 384 (606)
|++||+.++.+|+.++++.+.+.+|+|.+.+..++.+|..+..
T Consensus 67 ar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~ 146 (444)
T 1g41_A 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEV 146 (444)
T ss_dssp HHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC--------------------------
T ss_pred HHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999887789998667777776654310
Q ss_pred ---------------------------------------h----------------------------------------
Q 007362 385 ---------------------------------------N---------------------------------------- 385 (606)
Q Consensus 385 ---------------------------------------~---------------------------------------- 385 (606)
.
T Consensus 147 ~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l 226 (444)
T 1g41_A 147 ENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKAL 226 (444)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHH
Confidence 0
Q ss_pred ------------------hhhc-CCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCC
Q 007362 386 ------------------VEAA-QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG 446 (606)
Q Consensus 386 ------------------l~~a-~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~ 446 (606)
+..+ ..+|||+||||++..+.. ..+.++|++.+|++||++||+.+++.
T Consensus 227 ~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~----------- 293 (444)
T 1g41_A 227 IDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST----------- 293 (444)
T ss_dssp CGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE-----------
T ss_pred HHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc-----------
Confidence 0122 567999999999986532 25678888999999999999887763
Q ss_pred CcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC
Q 007362 447 DSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP 526 (606)
Q Consensus 447 ~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d 526 (606)
+.+.+++++++||||++|+. + ++. .+.|+|++||+
T Consensus 294 ~~~~~d~~~ilfI~~gaf~~---------------------~-------------------~~~-----dlipel~~R~~ 328 (444)
T 1g41_A 294 KHGMVKTDHILFIASGAFQV---------------------A-------------------RPS-----DLIPELQGRLP 328 (444)
T ss_dssp TTEEEECTTCEEEEEECCSS---------------------C-------------------CGG-----GSCHHHHTTCC
T ss_pred ccceecCCcEEEEecccccc---------------------C-------------------Chh-----hcchHHhcccc
Confidence 23689999999999998751 0 011 16799999999
Q ss_pred eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccC-----CCCCChHHHHHHHHHHHHHHH
Q 007362 527 ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT-----AKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 527 ~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~-----~~~~GAR~L~~~Ie~~l~~al 601 (606)
.+|.|++|+++++.+|+.++.+.+.++|.+.+...++++.++++++++|++.++ ..+.|||.|+++|++++.+.+
T Consensus 329 i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~ 408 (444)
T 1g41_A 329 IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 408 (444)
T ss_dssp EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred eeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999888899999999999999999999999999999764 489999999999999999999
Q ss_pred HhcCC
Q 007362 602 YEVRT 606 (606)
Q Consensus 602 ~~~~~ 606 (606)
+++|+
T Consensus 409 ~~~~~ 413 (444)
T 1g41_A 409 FSASD 413 (444)
T ss_dssp HHGGG
T ss_pred hhccc
Confidence 99874
No 4
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.93 E-value=9e-26 Score=230.90 Aligned_cols=268 Identities=41% Similarity=0.676 Sum_probs=200.1
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
.+++++.+.|++.|+||+++++.|..++..++.+.. . ...+ .....+.++||+||||||||++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~---~------~~~~--------~~~~~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQ---L------QEPL--------RHEVTPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTS---S------CHHH--------HHHCCCCCEEEECCTTSSHHHH
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhh---h------cccc--------cccCCCceEEEECCCCCCHHHH
Confidence 578999999999999999999999998875443210 0 0000 0011247899999999999999
Q ss_pred HHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhc-CCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAA-QQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 342 AralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a-~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
|+++|+.++.+++.+++..+...+|+|......+..++......+..+ .++||||||+|++...... .+.+.+...+
T Consensus 67 a~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~ 144 (310)
T 1ofh_A 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGV 144 (310)
T ss_dssp HHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHH
T ss_pred HHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHH
Confidence 999999999999999999988768888776677878877654433332 4689999999999876421 2233344557
Q ss_pred HHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhH
Q 007362 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (606)
Q Consensus 421 q~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~ 500 (606)
++.|+++||+..+.... -.....+++||+++++.. .
T Consensus 145 ~~~Ll~~le~~~~~~~~-----------~~~~~~~~~~i~~~~~~~------------------~--------------- 180 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTKH-----------GMVKTDHILFIASGAFQV------------------A--------------- 180 (310)
T ss_dssp HHHHHHHHHCCEEEETT-----------EEEECTTCEEEEEECCSS------------------S---------------
T ss_pred HHHHHHHhcCCeEeccc-----------ccccCCcEEEEEcCCccc------------------C---------------
Confidence 99999999965443210 134667888888765320 0
Q ss_pred HHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccC
Q 007362 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (606)
Q Consensus 501 ~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~ 580 (606)
....+.|+|++||+.++.|++++.+++.+|+...+..+.+++.+.+...+..+.++++++++|++++|
T Consensus 181 ------------~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 248 (310)
T 1ofh_A 181 ------------RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 248 (310)
T ss_dssp ------------CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHH
T ss_pred ------------CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhh
Confidence 01137889999999889999999999999999755556666666666677778899999999999987
Q ss_pred CC-----CCChHHHHHHHHHHHHHHHHhc
Q 007362 581 AK-----NTGARGLRAILESILTEAMYEV 604 (606)
Q Consensus 581 ~~-----~~GAR~L~~~Ie~~l~~al~~~ 604 (606)
.. ..++|.|.+++++++..+..+.
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~ 277 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSA 277 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHG
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCC
Confidence 52 5678999999999987766543
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.92 E-value=7.1e-25 Score=253.42 Aligned_cols=273 Identities=21% Similarity=0.302 Sum_probs=192.0
Q ss_pred cccCCCCCCCCCCC----hHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccC
Q 007362 250 SRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEK 325 (606)
Q Consensus 250 ~~~~g~p~~~~~~~----~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~ 325 (606)
..|+++|+...... ...+.+.|.+.|+||+++++.|..++... ..+... ...+.
T Consensus 431 ~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~-----~~g~~~-----------------~~~p~ 488 (758)
T 1r6b_X 431 ARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA-----RAGLGH-----------------EHKPV 488 (758)
T ss_dssp HHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH-----HTTCSC-----------------TTSCS
T ss_pred HHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH-----hcccCC-----------------CCCCc
Confidence 35667776655443 34567778888999999999998888522 111110 00122
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhc-----------CCcccchHHHHHHHHHhhhhhhhhcCCCEE
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGMV 394 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~s-----------g~vG~~~~~~l~~lf~~a~~~l~~a~~~IL 394 (606)
.++||+||||||||++|+++|+.++.+|+.++++++.+. +|+|.+....+...+. .+.++||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~~vl 561 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-------KHPHAVL 561 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHH-------HCSSEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHH-------hCCCcEE
Confidence 589999999999999999999999999999999987642 3555543333333332 3467899
Q ss_pred EEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhh
Q 007362 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISER 474 (606)
Q Consensus 395 fIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~ 474 (606)
||||||++++. +++.|+++||...++. .....++.+|++||+|+|... +.++
T Consensus 562 ~lDEi~~~~~~--------------~~~~Ll~~le~~~~~~----------~~g~~~~~~~~~iI~tsN~~~-~~~~--- 613 (758)
T 1r6b_X 562 LLDEIEKAHPD--------------VFNILLQVMDNGTLTD----------NNGRKADFRNVVLVMTTNAGV-RETE--- 613 (758)
T ss_dssp EEETGGGSCHH--------------HHHHHHHHHHHSEEEE----------TTTEEEECTTEEEEEEECSSC-C------
T ss_pred EEeCccccCHH--------------HHHHHHHHhcCcEEEc----------CCCCEEecCCeEEEEecCcch-hhhh---
Confidence 99999999887 9999999999444331 123467889999999988632 1111
Q ss_pred hcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHH
Q 007362 475 RQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQY 554 (606)
Q Consensus 475 ~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~ 554 (606)
+..+||..... ...+. +.++..|.|+|++||+.+|.|++++.+++..|+...+..+.+++
T Consensus 614 --~~~~g~~~~~~--------~~~~~----------~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 614 --RKSIGLIHQDN--------STDAM----------EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp ------------------------CH----------HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --hcccCccccch--------HHHHH----------HHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12234432110 01111 12333589999999999999999999999999998766554443
Q ss_pred HHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 555 KRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 555 ~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
...++.+.++++++++|++++|+.++|+|.|+++|++.+...|.+
T Consensus 674 ----~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 674 ----DQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp ----HHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred ----HHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 345777889999999999999999999999999999999886653
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.92 E-value=3.2e-24 Score=220.39 Aligned_cols=259 Identities=24% Similarity=0.359 Sum_probs=178.4
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHH
Q 007362 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (606)
Q Consensus 265 ~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAra 344 (606)
.++.+.|.+.++||+.+++.|..++......+ .. ...+..++||+||||||||++|++
T Consensus 9 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~-----~~-----------------~~~~~~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 9 LRLEEELHKRVVGQDEAIRAVADAIRRARAGL-----KD-----------------PNRPIGSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp HTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTC-----SC-----------------TTSCSEEEEEESCSSSSHHHHHHH
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-----CC-----------------CCCCceEEEEECCCCcCHHHHHHH
Confidence 45778888889999999999999886331111 00 011235799999999999999999
Q ss_pred HHHHh---CCceeecchhhhhhc-----------CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccc
Q 007362 345 LARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (606)
Q Consensus 345 lA~~l---~~~fi~i~~s~l~~s-----------g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~ 410 (606)
+|+.+ +.+|+.+++..+... +++|......+... +..+.++||||||+|++...
T Consensus 67 la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-------~~~~~~~vl~lDEi~~l~~~----- 134 (311)
T 4fcw_A 67 LAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA-------VRRRPYSVILFDAIEKAHPD----- 134 (311)
T ss_dssp HHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHH-------HHHCSSEEEEEETGGGSCHH-----
T ss_pred HHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHH-------HHhCCCeEEEEeChhhcCHH-----
Confidence 99998 457888888765421 12222211122222 22335689999999999887
Q ss_pred cccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccc
Q 007362 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (606)
Q Consensus 411 ~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~ 490 (606)
+++.|+++|+...+.. .....++.++++||+|+|... +.+......
T Consensus 135 ---------~~~~Ll~~le~~~~~~----------~~~~~~~~~~~iiI~ttn~~~--~~i~~~~~~------------- 180 (311)
T 4fcw_A 135 ---------VFNILLQMLDDGRLTD----------SHGRTVDFRNTVIIMTSNLGS--PLILEGLQK------------- 180 (311)
T ss_dssp ---------HHHHHHHHHHHSEEEC----------TTSCEEECTTEEEEEEESTTH--HHHHTTTTS-------------
T ss_pred ---------HHHHHHHHHhcCEEEc----------CCCCEEECCCcEEEEecccCH--HHHHhhhcc-------------
Confidence 9999999999544431 122367888999999988631 111110000
Q ss_pred ccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH
Q 007362 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (606)
Q Consensus 491 ~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~ 570 (606)
+.....+...+. +.+...|.|+|++||+.++.|.+++.+++..|+...+..+.+.+ ...+..+.++++
T Consensus 181 --~~~~~~l~~~~~------~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~----~~~~~~~~~~~~ 248 (311)
T 4fcw_A 181 --GWPYERIRDEVF------KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARL----AEKRISLELTEA 248 (311)
T ss_dssp --CCCSSTHHHHTH------HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHH----HTTTCEEEECHH
T ss_pred --cccHHHHHHHHH------HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH----HhCCcEEEeCHH
Confidence 000011111111 11234489999999999999999999999999997666555443 335667889999
Q ss_pred HHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 571 ALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 571 al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
++++|+++.|....++|+|+++|++++..++.+
T Consensus 249 ~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 249 AKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp HHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 999999999988889999999999999887754
No 7
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-23 Score=225.77 Aligned_cols=221 Identities=23% Similarity=0.333 Sum_probs=166.0
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHH--HHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~r--l~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
+++ |.|++++|+.|.++|..+++. ++.. .| ..++++||||||||||||++|+++|++
T Consensus 147 ~~d-IgGl~~~k~~l~e~v~~Pl~~pe~f~~-----~g---------------i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 147 YDM-VGGLTKQIKEIKEVIELPVKHPELFES-----LG---------------IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHCHHHHHH-----HT---------------CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHH-hCCHHHHHHHHHHHHHHHHhCHHHHHh-----CC---------------CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 444 899999999999999754332 2211 00 123589999999999999999999999
Q ss_pred hCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH
Q 007362 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (606)
Q Consensus 349 l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L 428 (606)
++.+|+.++++++. ++|+|++ +..++.+|..+... .++||||||||.+...|.....+.+.....+.+.||..|
T Consensus 206 ~~~~f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~~----aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 279 (405)
T 4b4t_J 206 TDCKFIRVSGAELV-QKYIGEG-SRMVRELFVMAREH----APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQL 279 (405)
T ss_dssp HTCEEEEEEGGGGS-CSSTTHH-HHHHHHHHHHHHHT----CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHH
T ss_pred hCCCceEEEhHHhh-ccccchH-HHHHHHHHHHHHHh----CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 99999999999998 5699998 78899999988765 789999999999998876655544444456888999999
Q ss_pred hceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhc
Q 007362 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (606)
Q Consensus 429 eg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~ 508 (606)
||.. ...++++|+|+|..+
T Consensus 280 Dg~~-------------------~~~~V~vIaATNrpd------------------------------------------ 298 (405)
T 4b4t_J 280 DGFE-------------------TSKNIKIIMATNRLD------------------------------------------ 298 (405)
T ss_dssp HTTT-------------------CCCCEEEEEEESCSS------------------------------------------
T ss_pred hccC-------------------CCCCeEEEeccCChh------------------------------------------
Confidence 9622 234567777777432
Q ss_pred chhhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCCh
Q 007362 509 SSDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGA 586 (606)
Q Consensus 509 ~~~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GA 586 (606)
.++|+|+. |||..|.|+.++.++..+|++..+ .++.+. ++-.++.|++. ..+|..
T Consensus 299 -------~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~-------------~~~~l~-~dvdl~~lA~~--t~G~SG 355 (405)
T 4b4t_J 299 -------ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS-------------RKMNLT-RGINLRKVAEK--MNGCSG 355 (405)
T ss_dssp -------SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-------------TTSBCC-SSCCHHHHHHH--CCSCCH
T ss_pred -------hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh-------------cCCCCC-ccCCHHHHHHH--CCCCCH
Confidence 26778876 999999999999999999986421 111211 11126777776 456777
Q ss_pred HHHHHHHHHHHHHHHH
Q 007362 587 RGLRAILESILTEAMY 602 (606)
Q Consensus 587 R~L~~~Ie~~l~~al~ 602 (606)
.+|+.++.+....++.
T Consensus 356 ADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 356 ADVKGVCTEAGMYALR 371 (405)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899888887776654
No 8
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.90 E-value=1.2e-23 Score=243.34 Aligned_cols=258 Identities=21% Similarity=0.324 Sum_probs=178.2
Q ss_pred CcccCCCCCCCCCC----ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccccc
Q 007362 249 GSRWGGSNLGEDLP----TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (606)
Q Consensus 249 ~~~~~g~p~~~~~~----~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~ 324 (606)
+..|+++|+..... ....+.+.+.+.|+||+++++.|..++.... ..... ...+
T Consensus 463 v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~-----~~~~~-----------------~~~p 520 (758)
T 3pxi_A 463 VSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRAR-----AGLKD-----------------PKRP 520 (758)
T ss_dssp HHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHT-----TTCSC-----------------TTSC
T ss_pred HHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHH-----cccCC-----------------CCCC
Confidence 34567776655332 2234677888889999999999998885221 11100 0011
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
..++||+||||||||++|+++|+.+ +.+|+.++|+++.+. +... ...+...+ ....++||||||||+
T Consensus 521 ~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~-------~~~~~~vl~lDEi~~ 590 (758)
T 3pxi_A 521 IGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKV-------RRKPYSVVLLDAIEK 590 (758)
T ss_dssp SEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHH-------HHCSSSEEEEECGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhHHH-------HhCCCeEEEEeCccc
Confidence 2479999999999999999999998 679999999988754 2222 12222222 223668999999999
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCC
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~ig 481 (606)
+++. +++.|+++||.+.+... .+..++..+++||+|+|...-.
T Consensus 591 ~~~~--------------~~~~Ll~~le~g~~~~~----------~g~~~~~~~~~iI~ttn~~~~~------------- 633 (758)
T 3pxi_A 591 AHPD--------------VFNILLQVLEDGRLTDS----------KGRTVDFRNTILIMTSNVGASE------------- 633 (758)
T ss_dssp SCHH--------------HHHHHHHHHHHSBCC---------------CCBCTTCEEEEEESSSTTC-------------
T ss_pred cCHH--------------HHHHHHHHhccCeEEcC----------CCCEeccCCeEEEEeCCCChhh-------------
Confidence 9887 99999999995433211 1123567888899988743100
Q ss_pred cCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 007362 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMN 561 (606)
Q Consensus 482 f~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~ 561 (606)
...+. +.+...|.|+|++||+.+|.|++++.+++.+|+...+..+.+++ ...
T Consensus 634 ------------------~~~~~------~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~----~~~ 685 (758)
T 3pxi_A 634 ------------------KDKVM------GELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRL----KEQ 685 (758)
T ss_dssp ------------------CHHHH------HHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred ------------------HHHHH------HHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHH----HhC
Confidence 00011 11233489999999999999999999999999998766665554 334
Q ss_pred CcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 562 NVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 562 ~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
++.+.++++++++|++.+|+..+|+|+|+++|++.+...+.+
T Consensus 686 ~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 686 DLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp TCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHH
T ss_pred CCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999888764
No 9
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.4e-23 Score=220.77 Aligned_cols=222 Identities=21% Similarity=0.284 Sum_probs=166.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHH--HHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHH
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~r--l~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~ 347 (606)
.+++ |.|++++|+.|.++|..+++. ++... -..++++||||||||||||++|++||+
T Consensus 180 ~~~D-IgGld~~k~~L~e~v~~Pl~~pe~f~~~--------------------Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 180 SYSD-IGGLESQIQEIKESVELPLTHPELYEEM--------------------GIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CGGG-TCSCHHHHHHHHHHHHHHHHCCHHHHHH--------------------TCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred ccee-cCcHHHHHHHHHHHHHHHHhCHHHHHhC--------------------CCCCCCCCceECCCCchHHHHHHHHHH
Confidence 4554 899999999999999754331 22110 012358999999999999999999999
Q ss_pred HhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHH
Q 007362 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (606)
Q Consensus 348 ~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~ 427 (606)
+++.+|+.++++++. +.|+|+. +..++.+|..+... .++||||||+|.+...|...+.+.+.....+.+.||..
T Consensus 239 e~~~~fi~v~~s~l~-sk~vGes-ek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~ 312 (437)
T 4b4t_I 239 QTSATFLRIVGSELI-QKYLGDG-PRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 312 (437)
T ss_dssp HHTCEEEEEESGGGC-CSSSSHH-HHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH
T ss_pred HhCCCEEEEEHHHhh-hccCchH-HHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999998 5799998 78899999988765 78999999999999887665554444445677888888
Q ss_pred HhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhh
Q 007362 428 LEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (606)
Q Consensus 428 Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~ 507 (606)
|||.. ...++++|+|+|..+
T Consensus 313 lDg~~-------------------~~~~ViVIaATNrpd----------------------------------------- 332 (437)
T 4b4t_I 313 LDGFD-------------------DRGDVKVIMATNKIE----------------------------------------- 332 (437)
T ss_dssp HHHCC-------------------CSSSEEEEEEESCST-----------------------------------------
T ss_pred hhCcC-------------------CCCCEEEEEeCCChh-----------------------------------------
Confidence 88621 234577777777432
Q ss_pred cchhhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH-HHHHHHHccCCCCC
Q 007362 508 ESSDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNT 584 (606)
Q Consensus 508 ~~~~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~-al~~La~~a~~~~~ 584 (606)
.++|+|+. |||..|.|+.++.++..+|+...+ .++. ++++ .++.|++. ..+|
T Consensus 333 --------~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l-------------~~~~--l~~dvdl~~LA~~--T~Gf 387 (437)
T 4b4t_I 333 --------TLDPALIRPGRIDRKILFENPDLSTKKKILGIHT-------------SKMN--LSEDVNLETLVTT--KDDL 387 (437)
T ss_dssp --------TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH-------------TTSC--BCSCCCHHHHHHH--CCSC
T ss_pred --------hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh-------------cCCC--CCCcCCHHHHHHh--CCCC
Confidence 37888886 999999999999999999987431 1112 2111 25677766 4567
Q ss_pred ChHHHHHHHHHHHHHHHHh
Q 007362 585 GARGLRAILESILTEAMYE 603 (606)
Q Consensus 585 GAR~L~~~Ie~~l~~al~~ 603 (606)
...+|+.++.+....++.+
T Consensus 388 SGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 388 SGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 7788998888877766643
No 10
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-22 Score=220.78 Aligned_cols=221 Identities=23% Similarity=0.278 Sum_probs=164.6
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHH--HHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~r--l~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
+++ |.|++++|+.|.+.|..+++. ++... -..++++||||||||||||++|+++|++
T Consensus 180 ~~d-igGl~~~k~~l~e~v~~pl~~pe~f~~~--------------------g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 180 YSD-VGGLDKQIEELVEAIVLPMKRADKFKDM--------------------GIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHCSHHHHHH--------------------CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hHh-cCcHHHHHHHHHHHHHHHHhCHHHHHhC--------------------CCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 444 899999999999998754431 11110 0123589999999999999999999999
Q ss_pred hCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH
Q 007362 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (606)
Q Consensus 349 l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L 428 (606)
++.+|+.++++++. +.|+|+. +..++.+|..+... .++||||||+|.+...|.....+.......+.+.||..|
T Consensus 239 ~~~~f~~v~~s~l~-~~~vGes-e~~ir~lF~~A~~~----aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 239 TNATFLKLAAPQLV-QMYIGEG-AKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL 312 (434)
T ss_dssp HTCEEEEEEGGGGC-SSCSSHH-HHHHHHHHHHHHHH----CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH
T ss_pred hCCCEEEEehhhhh-hcccchH-HHHHHHHHHHHHhc----CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh
Confidence 99999999999998 5699998 78899999988765 889999999999998876554444333345778899999
Q ss_pred hceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhc
Q 007362 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (606)
Q Consensus 429 eg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~ 508 (606)
||.. ...++++|+|+|..
T Consensus 313 dg~~-------------------~~~~ViVIaaTNrp------------------------------------------- 330 (434)
T 4b4t_M 313 DGFS-------------------SDDRVKVLAATNRV------------------------------------------- 330 (434)
T ss_dssp TTSC-------------------SSCSSEEEEECSSC-------------------------------------------
T ss_pred hccC-------------------CCCCEEEEEeCCCc-------------------------------------------
Confidence 8622 12346677777743
Q ss_pred chhhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCCh
Q 007362 509 SSDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGA 586 (606)
Q Consensus 509 ~~~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GA 586 (606)
..++|+|+. |||..|.|+.++.++..+|++..+.. + ...-.++ ++.|++. ..+|..
T Consensus 331 ------~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--------~---~~~~dvd---l~~lA~~--t~G~sG 388 (434)
T 4b4t_M 331 ------DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK--------M---TTDDDIN---WQELARS--TDEFNG 388 (434)
T ss_dssp ------CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH--------S---CBCSCCC---HHHHHHH--CSSCCH
T ss_pred ------hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC--------C---CCCCcCC---HHHHHHh--CCCCCH
Confidence 237888877 99999999999999999998753211 1 1111122 5677776 466777
Q ss_pred HHHHHHHHHHHHHHHH
Q 007362 587 RGLRAILESILTEAMY 602 (606)
Q Consensus 587 R~L~~~Ie~~l~~al~ 602 (606)
.+|+.++.+....++.
T Consensus 389 ADi~~l~~eA~~~a~r 404 (434)
T 4b4t_M 389 AQLKAVTVEAGMIALR 404 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999887776654
No 11
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.89 E-value=2.9e-23 Score=243.29 Aligned_cols=275 Identities=25% Similarity=0.374 Sum_probs=186.6
Q ss_pred CcccCCCCCCCCCCChHH----HHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccccc
Q 007362 249 GSRWGGSNLGEDLPTPKE----ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (606)
Q Consensus 249 ~~~~~g~p~~~~~~~~~~----l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~ 324 (606)
+..|+++|+........+ +.+.+.+.|+||+.+++.|..++... . ..... . ..+
T Consensus 530 v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~----~-~g~~~-------------~----~~p 587 (854)
T 1qvr_A 530 VSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA----R-AGLKD-------------P----NRP 587 (854)
T ss_dssp HHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH----G-GGCSC-------------S----SSC
T ss_pred HHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH----h-cccCC-------------C----CCC
Confidence 456777766555443332 45666677999999999998888521 1 11100 0 011
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhc-----------CCcccchHHHHHHHHHhhhhhhhhcC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~s-----------g~vG~~~~~~l~~lf~~a~~~l~~a~ 390 (606)
..++||+||||||||++|++||+.+ +.+|+.++|+.+... +|+|+.....+...+. ...
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~-------~~~ 660 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR-------RRP 660 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHH-------HCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHH-------hCC
Confidence 2589999999999999999999998 789999999876532 3445442233322222 235
Q ss_pred CCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHH
Q 007362 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (606)
Q Consensus 391 ~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~ 470 (606)
++||||||||+++.. +++.|+++||...+. + .....++.++++||+|+|... . .
T Consensus 661 ~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~~~-~---------~~g~~vd~~~~iiI~tsn~~~-~-~ 714 (854)
T 1qvr_A 661 YSVILFDEIEKAHPD--------------VFNILLQILDDGRLT-D---------SHGRTVDFRNTVIILTSNLGS-P-L 714 (854)
T ss_dssp SEEEEESSGGGSCHH--------------HHHHHHHHHTTTEEC-C---------SSSCCEECTTEEEEEECCTTH-H-H
T ss_pred CeEEEEecccccCHH--------------HHHHHHHHhccCceE-C---------CCCCEeccCCeEEEEecCcCh-H-H
Confidence 689999999999887 999999999954432 1 123457889999999988531 1 1
Q ss_pred HHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHH
Q 007362 471 ISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNAL 550 (606)
Q Consensus 471 i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L 550 (606)
+.... +++ .....+...++. ..+..|.|+|++||+.++.|.+++.+++..|+..++..+
T Consensus 715 ~~~~~-----~~~----------~~~~~l~~~v~~------~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 715 ILEGL-----QKG----------WPYERIRDEVFK------VLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp HHHHH-----HTT----------CCHHHHHHHHHH------HHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred Hhhhc-----ccc----------cchHHHHHHHHH------HHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 11000 000 001112222211 134569999999999999999999999999999876666
Q ss_pred HHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 551 GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 551 ~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
.+++ ...++.+.++++++++|++++|+..+|+|+|+++|++.+...+.+
T Consensus 774 ~~~~----~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 774 RARL----AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHHH----HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHH----HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 5443 334667889999999999999998999999999999998887754
No 12
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.2e-22 Score=218.92 Aligned_cols=218 Identities=19% Similarity=0.239 Sum_probs=161.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHH--HHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 275 VIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~r--l~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
|.|++++|+.|.++|..+++. ++.. .| ..++++||||||||||||++|++||++++.+
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~-----~G---------------i~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFAT-----LG---------------IDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHH-----HT---------------CCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHH-----CC---------------CCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 899999999999998643321 2111 00 1235899999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~ 432 (606)
|+.++++++. +.|+|+. +..++.+|..+... .++||||||+|.+...|.....+.......+++.||..|++..
T Consensus 271 fi~vs~s~L~-sk~vGes-ek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 271 FIRVIGSELV-QKYVGEG-ARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp EEEEEGGGGC-CCSSSHH-HHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred eEEEEhHHhh-cccCCHH-HHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 9999999998 5699998 78899999988765 7899999999999988765544444444567788888888622
Q ss_pred eecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhh
Q 007362 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (606)
Q Consensus 433 ~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l 512 (606)
...++++|+|+|..+
T Consensus 345 -------------------~~~~ViVIaATNrpd---------------------------------------------- 359 (467)
T 4b4t_H 345 -------------------PRGNIKVMFATNRPN---------------------------------------------- 359 (467)
T ss_dssp -------------------CTTTEEEEEECSCTT----------------------------------------------
T ss_pred -------------------CCCcEEEEeCCCCcc----------------------------------------------
Confidence 234567777777432
Q ss_pred hhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHH
Q 007362 513 IAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (606)
Q Consensus 513 ~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~ 590 (606)
.++|+|+. |||..|.|+.++.++..+|++..+ +.....-.++ ++.|++. ..+|...+|+
T Consensus 360 ---~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l-----------~~~~l~~dvd---l~~LA~~--T~GfSGADI~ 420 (467)
T 4b4t_H 360 ---TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS-----------KSMSVERGIR---WELISRL--CPNSTGAELR 420 (467)
T ss_dssp ---SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH-----------TTSCBCSSCC---HHHHHHH--CCSCCHHHHH
T ss_pred ---cCChhhhccccccEEEEeCCcCHHHHHHHHHHHh-----------cCCCCCCCCC---HHHHHHH--CCCCCHHHHH
Confidence 26777776 999999999999999999987431 1111111122 5667766 4567778888
Q ss_pred HHHHHHHHHHHH
Q 007362 591 AILESILTEAMY 602 (606)
Q Consensus 591 ~~Ie~~l~~al~ 602 (606)
.++.+....++.
T Consensus 421 ~l~~eAa~~Air 432 (467)
T 4b4t_H 421 SVCTEAGMFAIR 432 (467)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877666653
No 13
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.1e-22 Score=217.55 Aligned_cols=221 Identities=23% Similarity=0.294 Sum_probs=164.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHH--HHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~r--l~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
+++ |.|++++|+.|.++|..+++. ++... | ..++++||||||||||||++|++||+.
T Consensus 180 ~~d-igGl~~~k~~l~e~v~~pl~~p~~f~~~-----g---------------~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 180 FDG-IGGLTEQIRELREVIELPLKNPEIFQRV-----G---------------IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SGG-GCSCHHHHHHHHHHHHHHHHCHHHHHHH-----C---------------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhH-hCChHHHHHHHHHHHHHHHhCHHHHHhC-----C---------------CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 444 899999999999999754332 22110 0 123589999999999999999999999
Q ss_pred hCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH
Q 007362 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (606)
Q Consensus 349 l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L 428 (606)
++.+|+.++++++. ++|+|+. +..++.+|..+... .++||||||+|.+...|.....+.+.....+.+.||..|
T Consensus 239 ~~~~~~~v~~s~l~-sk~~Ges-e~~ir~~F~~A~~~----~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 312 (437)
T 4b4t_L 239 IGANFIFSPASGIV-DKYIGES-ARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQM 312 (437)
T ss_dssp HTCEEEEEEGGGTC-CSSSSHH-HHHHHHHHHHHHHS----CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHH
T ss_pred hCCCEEEEehhhhc-cccchHH-HHHHHHHHHHHHhc----CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHh
Confidence 99999999999998 5699998 78899999888765 899999999999998876554444444456788999999
Q ss_pred hceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhc
Q 007362 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (606)
Q Consensus 429 eg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~ 508 (606)
||.. ...++++|+|+|..+
T Consensus 313 Dg~~-------------------~~~~vivI~ATNrp~------------------------------------------ 331 (437)
T 4b4t_L 313 DGFD-------------------NLGQTKIIMATNRPD------------------------------------------ 331 (437)
T ss_dssp HSSS-------------------CTTSSEEEEEESSTT------------------------------------------
T ss_pred hccc-------------------CCCCeEEEEecCCch------------------------------------------
Confidence 9722 124566777777431
Q ss_pred chhhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCCh
Q 007362 509 SSDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGA 586 (606)
Q Consensus 509 ~~~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GA 586 (606)
.++|+|+. |||..|.|+.++.++..+|++..+.. ....-.++ ++.|++. ..+|..
T Consensus 332 -------~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----------~~~~~d~d---l~~lA~~--t~G~sG 388 (437)
T 4b4t_L 332 -------TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK-----------VKKTGEFD---FEAAVKM--SDGFNG 388 (437)
T ss_dssp -------SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-----------SCBCSCCC---HHHHHHT--CCSCCH
T ss_pred -------hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-----------CCCCcccC---HHHHHHh--CCCCCH
Confidence 26788865 59999999999999999998743111 11111122 5677765 566777
Q ss_pred HHHHHHHHHHHHHHHH
Q 007362 587 RGLRAILESILTEAMY 602 (606)
Q Consensus 587 R~L~~~Ie~~l~~al~ 602 (606)
.+|+.++.+....++.
T Consensus 389 ADi~~l~~eA~~~air 404 (437)
T 4b4t_L 389 ADIRNCATEAGFFAIR 404 (437)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999988877766654
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6e-22 Score=214.92 Aligned_cols=220 Identities=20% Similarity=0.283 Sum_probs=163.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHH--HHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~r--l~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
.|.|++++|+.|.+.|...++. ++.. .| ..++++||||||||||||++|+++|+.++.
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~-----~g---------------~~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQ-----IG---------------IDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHH-----HC---------------CCCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHh-----CC---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3899999999999999744332 2111 00 123589999999999999999999999999
Q ss_pred ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhce
Q 007362 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (606)
Q Consensus 352 ~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~ 431 (606)
+|+.++++++. +.|+|+. +..++.+|..+... .++||||||+|.+...|.....+.+.....+.+.||..|||.
T Consensus 233 ~~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 233 AFIRVNGSEFV-HKYLGEG-PRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp EEEEEEGGGTC-CSSCSHH-HHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred CeEEEecchhh-ccccchh-HHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 99999999998 5699998 78899999988765 789999999999998876555444444456889999999973
Q ss_pred eeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchh
Q 007362 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSD 511 (606)
Q Consensus 432 ~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 511 (606)
. ...++++|+|+|..+
T Consensus 307 ~-------------------~~~~v~vI~aTN~~~--------------------------------------------- 322 (428)
T 4b4t_K 307 D-------------------QSTNVKVIMATNRAD--------------------------------------------- 322 (428)
T ss_dssp C-------------------SSCSEEEEEEESCSS---------------------------------------------
T ss_pred C-------------------CCCCEEEEEecCChh---------------------------------------------
Confidence 2 234567777777432
Q ss_pred hhhccCcccccc--cCCeEEEcC-CcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHH
Q 007362 512 LIAYGLIPEFVG--RFPILVSLT-ALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARG 588 (606)
Q Consensus 512 l~~~~l~PeLl~--R~d~iI~f~-~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~ 588 (606)
.++|+|+. |||..|.|+ ..+.++...|+...+. .....-.+ .++.|++. ..+|...+
T Consensus 323 ----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~-----------~~~l~~~~---dl~~lA~~--t~G~sgad 382 (428)
T 4b4t_K 323 ----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS-----------KMSLAPEA---DLDSLIIR--NDSLSGAV 382 (428)
T ss_dssp ----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH-----------SSCBCTTC---CHHHHHHH--TTTCCHHH
T ss_pred ----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc-----------CCCCCccc---CHHHHHHH--CCCCCHHH
Confidence 26777775 999999996 5678888888764211 11111112 26777776 46677789
Q ss_pred HHHHHHHHHHHHHHh
Q 007362 589 LRAILESILTEAMYE 603 (606)
Q Consensus 589 L~~~Ie~~l~~al~~ 603 (606)
|+.++.+....++.+
T Consensus 383 i~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
Confidence 999998877766643
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.85 E-value=1.3e-20 Score=196.70 Aligned_cols=222 Identities=22% Similarity=0.335 Sum_probs=163.3
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++.+|+.|.+++..... .... ......++.++||+||||||||++|+++|+.++
T Consensus 17 ~~d-i~G~~~~~~~l~~~i~~~~~---~~~~----------------~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 17 WED-VAGLEGAKEALKEAVILPVK---FPHL----------------FKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHH---CGGG----------------CCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred HHH-hcChHHHHHHHHHHHHHHHh---CHHH----------------HhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 444 89999999999998863321 1111 111223457899999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+|+.+++.++. ..|+|.. +..++.+|..+... .++||||||||.+...+.... ....+.+++.|+..|++
T Consensus 77 ~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~ 147 (322)
T 3eie_A 77 STFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN----KPSIIFIDQVDALTGTRGEGE---SEASRRIKTELLVQMNG 147 (322)
T ss_dssp CEEEEEEHHHHH-TTTGGGH-HHHHHHHHHHHHHT----SSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGG
T ss_pred CCEEEEchHHHh-hcccchH-HHHHHHHHHHHHhc----CCeEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcc
Confidence 999999999987 4588876 67788888877654 778999999999987654321 22234688999999985
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
... ...++++|+++|..
T Consensus 148 ~~~------------------~~~~v~vi~atn~~--------------------------------------------- 164 (322)
T 3eie_A 148 VGN------------------DSQGVLVLGATNIP--------------------------------------------- 164 (322)
T ss_dssp GGT------------------SCCCEEEEEEESCG---------------------------------------------
T ss_pred ccc------------------cCCceEEEEecCCh---------------------------------------------
Confidence 211 12356677766632
Q ss_pred hhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHH
Q 007362 511 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (606)
Q Consensus 511 ~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~ 590 (606)
..+.+.+++||+..+.|+.++.++..+|+... + ......++++.++.|++. ..++..+.|+
T Consensus 165 ----~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~-----------~--~~~~~~~~~~~l~~la~~--t~g~sg~di~ 225 (322)
T 3eie_A 165 ----WQLDSAIRRRFERRIYIPLPDLAARTTMFEIN-----------V--GDTPCVLTKEDYRTLGAM--TEGYSGSDIA 225 (322)
T ss_dssp ----GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHH-----------H--TTCCCCCCHHHHHHHHHT--TTTCCHHHHH
T ss_pred ----hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHH-----------h--ccCCCCCCHHHHHHHHHH--cCCCCHHHHH
Confidence 12678889999999999999999999988742 1 233455789999999987 4567778999
Q ss_pred HHHHHHHHHHHHh
Q 007362 591 AILESILTEAMYE 603 (606)
Q Consensus 591 ~~Ie~~l~~al~~ 603 (606)
.++......++.+
T Consensus 226 ~l~~~a~~~a~r~ 238 (322)
T 3eie_A 226 VVVKDALMQPIRK 238 (322)
T ss_dssp HHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998887777654
No 16
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=3e-20 Score=190.79 Aligned_cols=231 Identities=20% Similarity=0.274 Sum_probs=160.1
Q ss_pred ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHH
Q 007362 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (606)
Q Consensus 263 ~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lA 342 (606)
..+++...|++.|+|++++|+.|.+.+...... ......+ -.......++||+||||||||++|
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~--~~~~~~g--------------~~~~~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVE--RARQKLG--------------LAHETPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH--HHHHHHT--------------CCSSCCCCEEEEEECTTSSHHHHH
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhH--HHHHHcC--------------CCCCCCCceEEEECCCCCCHHHHH
Confidence 556788888877999999999999887633211 0100000 000122368999999999999999
Q ss_pred HHHHHHh-------CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCc
Q 007362 343 KTLARHV-------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (606)
Q Consensus 343 ralA~~l-------~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~ 415 (606)
+++|+.+ ..+++.+++.++. ..++|.. ...+..+|..+ .++||||||+|.+...+.. ..
T Consensus 85 ~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~~-----~~ 150 (309)
T 3syl_A 85 LKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEVLKRA-------MGGVLFIDEAYYLYRPDNE-----RD 150 (309)
T ss_dssp HHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH-HHHHHHHHHHH-------TTSEEEEETGGGSCCCC--------C
T ss_pred HHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc-HHHHHHHHHhc-------CCCEEEEEChhhhccCCCc-----cc
Confidence 9999988 3389999998887 4577766 44455555544 5689999999998654221 11
Q ss_pred chhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccc
Q 007362 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVT 495 (606)
Q Consensus 416 s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~ 495 (606)
...++++.|++.|+.. ..++++|++++...++...
T Consensus 151 ~~~~~~~~Ll~~l~~~---------------------~~~~~~i~~~~~~~~~~~~------------------------ 185 (309)
T 3syl_A 151 YGQEAIEILLQVMENN---------------------RDDLVVILAGYADRMENFF------------------------ 185 (309)
T ss_dssp CTHHHHHHHHHHHHHC---------------------TTTCEEEEEECHHHHHHHH------------------------
T ss_pred ccHHHHHHHHHHHhcC---------------------CCCEEEEEeCChHHHHHHH------------------------
Confidence 2345999999999841 2356677777643211111
Q ss_pred hhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHH
Q 007362 496 DAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVI 575 (606)
Q Consensus 496 ~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~L 575 (606)
.+.|+|++||+.++.|++++.+++.+|+...+.. ..+.++++++++|
T Consensus 186 --------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~-------------~~~~~~~~~~~~l 232 (309)
T 3syl_A 186 --------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD-------------QNYQMTPEAETAL 232 (309)
T ss_dssp --------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH-------------TTCEECHHHHHHH
T ss_pred --------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH-------------cCCCCCHHHHHHH
Confidence 1458999999999999999999999998764221 1356899999999
Q ss_pred HHccC----CCCCC-hHHHHHHHHHHHHHHH
Q 007362 576 AKKAT----AKNTG-ARGLRAILESILTEAM 601 (606)
Q Consensus 576 a~~a~----~~~~G-AR~L~~~Ie~~l~~al 601 (606)
+++.. ....| +|.|++++++.+..+.
T Consensus 233 ~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 233 RAYIGLRRNQPHFANARSIRNALDRARLRQA 263 (309)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHHH
Confidence 88621 23334 8999999999887554
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=195.62 Aligned_cols=219 Identities=22% Similarity=0.343 Sum_probs=164.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-CCce
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV-NVPF 353 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l-~~~f 353 (606)
|+|++++|+.|.+++..+.+. ..... ....++.++||+||||||||++|+++|+.+ +.+|
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~---~~~~~----------------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKF---PHLFT----------------GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHC---GGGSC----------------TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred hcCHHHHHHHHHHHHHHHHhC---HHHHh----------------CCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 899999999999998643221 11111 112235899999999999999999999999 8899
Q ss_pred eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee
Q 007362 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (606)
Q Consensus 354 i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~ 433 (606)
+.+++.++. ..|+|.. +..++.+|..+... .++||||||||.+...+.... ......+++.|+..|++...
T Consensus 75 ~~i~~~~l~-~~~~g~~-~~~~~~lf~~a~~~----~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 75 FSISSSDLV-SKWLGES-EKLVKNLFQLAREN----KPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp EEEECCSSC-CSSCCSC-HHHHHHHHHHHHHT----SSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHHHCSSS
T ss_pred EEEEhHHHH-hhhhhHH-HHHHHHHHHHHHhc----CCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHHhcccc
Confidence 999999887 4588887 67788888776543 788999999999987654321 12234688999999986211
Q ss_pred ecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhh
Q 007362 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (606)
Q Consensus 434 ~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~ 513 (606)
...++++|+++|..
T Consensus 146 ------------------~~~~v~vI~atn~~------------------------------------------------ 159 (322)
T 1xwi_A 146 ------------------DNDGILVLGATNIP------------------------------------------------ 159 (322)
T ss_dssp ------------------CCTTEEEEEEESCT------------------------------------------------
T ss_pred ------------------cCCCEEEEEecCCc------------------------------------------------
Confidence 22456777766632
Q ss_pred hccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHH
Q 007362 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (606)
Q Consensus 514 ~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~I 593 (606)
..+.+.+++||+..+.++.++.++..+|+... + ......+++..++.|++. ..++..+.|+.++
T Consensus 160 -~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~-----------l--~~~~~~l~~~~l~~la~~--t~G~sgadl~~l~ 223 (322)
T 1xwi_A 160 -WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLH-----------L--GTTQNSLTEADFRELGRK--TDGYSGADISIIV 223 (322)
T ss_dssp -TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHH-----------H--TTCCBCCCHHHHHHHHHT--CTTCCHHHHHHHH
T ss_pred -ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHH-----------H--hcCCCCCCHHHHHHHHHH--cCCCCHHHHHHHH
Confidence 12678888999999999999999988888742 1 233445789999999987 4677778999999
Q ss_pred HHHHHHHHHh
Q 007362 594 ESILTEAMYE 603 (606)
Q Consensus 594 e~~l~~al~~ 603 (606)
.+....++.+
T Consensus 224 ~~A~~~a~r~ 233 (322)
T 1xwi_A 224 RDALMQPVRK 233 (322)
T ss_dssp HHHHTHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887754
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.85 E-value=2.1e-20 Score=198.16 Aligned_cols=222 Identities=22% Similarity=0.335 Sum_probs=159.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++.+|+.|.+++..+.. ..... .....++.+|||+||||||||++|+++|+.++
T Consensus 50 ~~d-i~G~~~~~~~l~~~v~~~~~---~~~~~----------------~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 50 WED-VAGLEGAKEALKEAVILPVK---FPHLF----------------KGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp GGG-SCCGGGHHHHHHHHTHHHHH---CGGGG----------------CSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HHH-hCCHHHHHHHHHHHHHHHHh---CHHHH----------------hcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 444 89999999999998853321 11110 11123357899999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+|+.+++.++. ..|+|.. +..++.+|..+... .++||||||||.+...+... .....+.+++.||..|++
T Consensus 110 ~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~ 180 (355)
T 2qp9_X 110 STFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN----KPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNG 180 (355)
T ss_dssp CEEEEEEHHHHH-SCC---C-HHHHHHHHHHHHHT----SSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHH
T ss_pred CCEEEeeHHHHh-hhhcchH-HHHHHHHHHHHHHc----CCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhc
Confidence 999999999987 4578877 66777888766543 67899999999998765432 122234588999999985
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
... ...+++||+++|..
T Consensus 181 ~~~------------------~~~~v~vI~atn~~--------------------------------------------- 197 (355)
T 2qp9_X 181 VGN------------------DSQGVLVLGATNIP--------------------------------------------- 197 (355)
T ss_dssp CC---------------------CCEEEEEEESCG---------------------------------------------
T ss_pred ccc------------------cCCCeEEEeecCCc---------------------------------------------
Confidence 211 22456777776632
Q ss_pred hhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHH
Q 007362 511 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (606)
Q Consensus 511 ~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~ 590 (606)
..+.+.+++||+..+.|+.++.++..+|+... + ....+.+++..++.|++. ..++..+.|+
T Consensus 198 ----~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~-----------l--~~~~~~~~~~~l~~la~~--t~G~sg~dl~ 258 (355)
T 2qp9_X 198 ----WQLDSAIRRRFERRIYIPLPDLAARTTMFEIN-----------V--GDTPSVLTKEDYRTLGAM--TEGYSGSDIA 258 (355)
T ss_dssp ----GGSCHHHHHTCCEEEECCCCCHHHHHHHHHHH-----------H--TTSCBCCCHHHHHHHHHH--TTTCCHHHHH
T ss_pred ----ccCCHHHHcccCEEEEeCCcCHHHHHHHHHHH-----------H--hhCCCCCCHHHHHHHHHH--cCCCCHHHHH
Confidence 12678888999999999999999988888642 1 123345789999999987 3567789999
Q ss_pred HHHHHHHHHHHHh
Q 007362 591 AILESILTEAMYE 603 (606)
Q Consensus 591 ~~Ie~~l~~al~~ 603 (606)
.++.+.+..++.+
T Consensus 259 ~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 259 VVVKDALMQPIRK 271 (355)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 19
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.83 E-value=5.9e-21 Score=220.85 Aligned_cols=221 Identities=22% Similarity=0.288 Sum_probs=139.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|.|++++|+.|.++|....+ ++.... +.-..++.++|||||||||||++|+++|.+++.+|+
T Consensus 479 iggl~~~k~~l~e~v~~p~~---~p~~f~---------------~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVE---HPDKFL---------------KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTT---CSGGGS---------------SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred hCCHHHHHHHHHHHHHhhhh---CHHHHH---------------hcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 79999999999998852211 111111 111234589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.++.+++. ++|+|++ ++.++.+|..++.. .++||||||||.+...|.....+.+...+.+.++||..|||..
T Consensus 541 ~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~~----~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-- 612 (806)
T 3cf2_A 541 SIKGPELL-TMWFGES-EANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-- 612 (806)
T ss_dssp ECCHHHHH-TTTCSSC-HHHHHHHHHHHHTT----CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC--
T ss_pred Eeccchhh-ccccchH-HHHHHHHHHHHHHc----CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC--
Confidence 99999998 5799999 78899999998765 7899999999999988764433333333569999999999721
Q ss_pred cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~ 514 (606)
...++++|+++|..+
T Consensus 613 -----------------~~~~V~vi~aTN~p~------------------------------------------------ 627 (806)
T 3cf2_A 613 -----------------TKKNVFIIGATNRPD------------------------------------------------ 627 (806)
T ss_dssp -----------------SSSSEEEECC-CCSS------------------------------------------------
T ss_pred -----------------CCCCEEEEEeCCCch------------------------------------------------
Confidence 123566676766432
Q ss_pred ccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHH
Q 007362 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (606)
Q Consensus 515 ~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~ 592 (606)
.++|+++. |||.+|.|+.++.++..+|++..+ .+..+. ++--++.|++. ..+|...+|..+
T Consensus 628 -~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l-------------~~~~~~-~~~dl~~la~~--t~g~SGadi~~l 690 (806)
T 3cf2_A 628 -IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL-------------RKSPVA-KDVDLEFLAKM--TNGFSGADLTEI 690 (806)
T ss_dssp -SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS-------------SCC--C-CC------------------CHHHH
T ss_pred -hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh-------------cCCCCC-CCCCHHHHHHh--CCCCCHHHHHHH
Confidence 26777876 999999999999998888887541 122211 11225666765 355666788888
Q ss_pred HHHHHHHHHHh
Q 007362 593 LESILTEAMYE 603 (606)
Q Consensus 593 Ie~~l~~al~~ 603 (606)
+.+....++.+
T Consensus 691 ~~~A~~~a~r~ 701 (806)
T 3cf2_A 691 CQRACKLAIRE 701 (806)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877777643
No 20
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.82 E-value=7.7e-20 Score=211.57 Aligned_cols=218 Identities=23% Similarity=0.333 Sum_probs=163.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
.|.|++++|+.|.++|..++ .++......|. .++++||||||||||||+||++||++++.+|
T Consensus 205 dIgGl~~~~~~l~e~v~~pl---~~p~~f~~~g~---------------~~p~GILL~GPPGTGKT~LAraiA~elg~~~ 266 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPL---RHPALFKAIGV---------------KPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHH---HCCGGGTSCCC---------------CCCCEEEEECCTTSCHHHHHHHHHTTTTCEE
T ss_pred hhcCHHHHHHHHHHHHHHHc---cCHHHHhhcCC---------------CCCCeEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 38999999999999986332 22333332221 2358999999999999999999999999999
Q ss_pred eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee
Q 007362 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (606)
Q Consensus 354 i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~ 433 (606)
+.+++.++. ..|+|+. +..++.+|..+... .++||||||||.+.+++.+.. ....+.+.++||..|++..
T Consensus 267 ~~v~~~~l~-sk~~ges-e~~lr~lF~~A~~~----~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~- 336 (806)
T 3cf2_A 267 FLINGPEIM-SKLAGES-ESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLK- 336 (806)
T ss_dssp EEEEHHHHH-SSCTTHH-HHHHHHHHHHHTTS----CSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCC-
T ss_pred EEEEhHHhh-cccchHH-HHHHHHHHHHHHHc----CCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhccc-
Confidence 999999998 5688988 78899999988765 789999999999998875433 2223568999999999621
Q ss_pred ecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhh
Q 007362 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (606)
Q Consensus 434 ~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~ 513 (606)
...++++|+++|..+
T Consensus 337 ------------------~~~~V~VIaaTN~~d----------------------------------------------- 351 (806)
T 3cf2_A 337 ------------------QRAHVIVMAATNRPN----------------------------------------------- 351 (806)
T ss_dssp ------------------GGGCEEEEEECSSTT-----------------------------------------------
T ss_pred ------------------ccCCEEEEEecCChh-----------------------------------------------
Confidence 223566777766321
Q ss_pred hccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHH
Q 007362 514 AYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (606)
Q Consensus 514 ~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~ 591 (606)
.++|.|++ |||..|.++.++.++..+|++.. ..+..+. ++-.++.|++. ..+|....|..
T Consensus 352 --~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~-------------l~~~~~~-~dvdl~~lA~~--T~GfsgaDL~~ 413 (806)
T 3cf2_A 352 --SIDPALRRFGRFDREVDIGIPDATGRLEILQIH-------------TKNMKLA-DDVDLEQVANE--THGHVGADLAA 413 (806)
T ss_dssp --TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHT-------------CSSSEEC-TTCCHHHHHHH--CCSCCHHHHHH
T ss_pred --hcCHHHhCCcccceEEecCCCCHHHHHHHHHHH-------------hcCCCCC-cccCHHHHHHh--cCCCCHHHHHH
Confidence 26777776 99999999999999999998743 1222221 12236777876 46677789999
Q ss_pred HHHHHHHHHHH
Q 007362 592 ILESILTEAMY 602 (606)
Q Consensus 592 ~Ie~~l~~al~ 602 (606)
++.+....++.
T Consensus 414 Lv~eA~~~A~~ 424 (806)
T 3cf2_A 414 LCSEAALQAIR 424 (806)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887776654
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=3e-19 Score=194.82 Aligned_cols=222 Identities=22% Similarity=0.333 Sum_probs=156.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l- 349 (606)
+++ |+|++.+|+.|.+++..+.+. ... ......++.+|||+||||||||++|++||+.+
T Consensus 133 ~~d-i~G~~~~k~~l~~~v~~p~~~---~~~----------------~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~ 192 (444)
T 2zan_A 133 WSD-VAGLEGAKEALKEAVILPIKF---PHL----------------FTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN 192 (444)
T ss_dssp GGG-SCSCHHHHHHHHHHHTHHHHC---TTT----------------TSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred HHH-hcCHHHHHHHHHHHHHHHhhC---HHH----------------hhccCCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 344 899999999999988532211 111 00112235899999999999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+.+|+.+++.++. ..|+|.. +..++.+|..+... .++||||||||.+...+.... ......+++.||..|+
T Consensus 193 ~~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 193 NSTFFSISSSDLV-SKWLGES-EKLVKNLFQLAREN----KPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQ 263 (444)
T ss_dssp SSEEEEECCC----------C-CCTHHHHHHHHHHS----CSEEEEESCTTTTCCCSSCCC---CGGGHHHHHHHHTTTT
T ss_pred CCCEEEEeHHHHH-hhhcchH-HHHHHHHHHHHHHc----CCeEEEEechHhhccCCCCcc---ccHHHHHHHHHHHHHh
Confidence 8899999999887 4577776 45677777766533 778999999999977654321 1223458899999988
Q ss_pred ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcc
Q 007362 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (606)
Q Consensus 430 g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~ 509 (606)
+... ...+++||+++|..
T Consensus 264 ~~~~------------------~~~~v~vI~atn~~-------------------------------------------- 281 (444)
T 2zan_A 264 GVGV------------------DNDGILVLGATNIP-------------------------------------------- 281 (444)
T ss_dssp CSSC------------------CCSSCEEEEEESCG--------------------------------------------
T ss_pred Cccc------------------CCCCEEEEecCCCc--------------------------------------------
Confidence 5211 23456777776632
Q ss_pred hhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHH
Q 007362 510 SDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGL 589 (606)
Q Consensus 510 ~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L 589 (606)
..+.+.+++||+.++.++.++.++...|+... + ....+.+++..++.|++. ..++..+.|
T Consensus 282 -----~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~-----------l--~~~~~~l~~~~l~~la~~--t~G~sgadl 341 (444)
T 2zan_A 282 -----WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLH-----------L--GSTQNSLTEADFQELGRK--TDGYSGADI 341 (444)
T ss_dssp -----GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHH-----------H--TTSCEECCHHHHHHHHHH--TTTCCHHHH
T ss_pred -----cccCHHHHhhcceEEEeCCcCHHHHHHHHHHH-----------H--hcCCCCCCHHHHHHHHHH--cCCCCHHHH
Confidence 12678899999999999999999988888642 1 123445789999999987 467778999
Q ss_pred HHHHHHHHHHHHHh
Q 007362 590 RAILESILTEAMYE 603 (606)
Q Consensus 590 ~~~Ie~~l~~al~~ 603 (606)
..++.+.+..++.+
T Consensus 342 ~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 342 SIIVRDALMQPVRK 355 (444)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887754
No 22
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.80 E-value=1.4e-18 Score=179.65 Aligned_cols=217 Identities=22% Similarity=0.308 Sum_probs=151.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHH--HHHh-hhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 275 VIGQEKAKKVLSVAVYNHYKR--IYHA-NLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~r--l~~~-~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
|+|++++|+.|.+++...... ++.. .. .++.++||+||||||||++|++||+.++.
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~---------------------~~~~~vLL~Gp~GtGKT~la~ala~~~~~ 75 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLKFGM---------------------TPSKGVLFYGPPGCGKTLLAKAIANECQA 75 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---------------------CCCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHcCC---------------------CCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 899999999999988643211 1110 11 12478999999999999999999999999
Q ss_pred ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhce
Q 007362 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (606)
Q Consensus 352 ~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~ 431 (606)
+|+.+++.++.. .|+|.. +..+..+|..+... .++||||||||.+...+.............+++.||..|++.
T Consensus 76 ~~i~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 76 NFISIKGPELLT-MWFGES-EANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp EEEEECHHHHHH-HHHTTC-TTHHHHHHHHHHHT----CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred CEEEEEhHHHHh-hhcCch-HHHHHHHHHHHHhc----CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 999999998874 467766 45667778776543 678999999999988765432222222245889999999852
Q ss_pred eeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchh
Q 007362 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSD 511 (606)
Q Consensus 432 ~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 511 (606)
. ...++++|+++|..+
T Consensus 150 ~-------------------~~~~v~vi~atn~~~--------------------------------------------- 165 (301)
T 3cf0_A 150 S-------------------TKKNVFIIGATNRPD--------------------------------------------- 165 (301)
T ss_dssp C-------------------TTSSEEEEEEESCGG---------------------------------------------
T ss_pred c-------------------CCCCEEEEEecCCcc---------------------------------------------
Confidence 1 124567777766321
Q ss_pred hhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHH
Q 007362 512 LIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGL 589 (606)
Q Consensus 512 l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L 589 (606)
.+.+.+++ ||+..+.|+.++.++..+|+... +...+....++ ++.|+.. ..++..++|
T Consensus 166 ----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~-----------l~~~~~~~~~~---~~~la~~--~~g~sg~dl 225 (301)
T 3cf0_A 166 ----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN-----------LRKSPVAKDVD---LEFLAKM--TNGFSGADL 225 (301)
T ss_dssp ----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH-----------HTTSCBCSSCC---HHHHHHT--CSSCCHHHH
T ss_pred ----ccChHHhcCCccceEEecCCcCHHHHHHHHHHH-----------HccCCCCccch---HHHHHHH--cCCCCHHHH
Confidence 25667776 99999999999999988887642 11112222233 4456654 344555699
Q ss_pred HHHHHHHHHHHHH
Q 007362 590 RAILESILTEAMY 602 (606)
Q Consensus 590 ~~~Ie~~l~~al~ 602 (606)
+.++++.+..++.
T Consensus 226 ~~l~~~a~~~a~~ 238 (301)
T 3cf0_A 226 TEICQRACKLAIR 238 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877764
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.80 E-value=7e-19 Score=188.11 Aligned_cols=220 Identities=24% Similarity=0.312 Sum_probs=149.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|+|++.+++.|.+.+...... .. ....+..+..+|||+||||||||++|++||+.++.+|+
T Consensus 117 iiG~~~~~~~l~~~~~~~~~~---~~----------------~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 117 IAGQDLAKQALQEIVILPSLR---PE----------------LFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp SCSCHHHHHHHHHHTHHHHHC---TT----------------TSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred hCCHHHHHHHHHHHHHHhccC---HH----------------HhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 899999999999988533211 11 11122234589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.+++.++.. .|+|.. +..+..+|..+... .++||||||||.+...+... .......+++.|+..|++....
T Consensus 178 ~v~~~~l~~-~~~g~~-~~~~~~~~~~a~~~----~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 178 NISAASLTS-KYVGEG-EKLVRALFAVAREL----QPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp EECSCCC--------C-HHHHHHHHHHHHHS----SSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC--
T ss_pred EeeHHHhhc-cccchH-HHHHHHHHHHHHhc----CCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhccccc
Confidence 999998874 477776 56677777766543 67899999999997664321 1222346889999999863221
Q ss_pred cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~ 514 (606)
...+++||+++|..
T Consensus 249 -----------------~~~~v~vI~atn~~------------------------------------------------- 262 (389)
T 3vfd_A 249 -----------------GDDRVLVMGATNRP------------------------------------------------- 262 (389)
T ss_dssp --------------------CEEEEEEESCG-------------------------------------------------
T ss_pred -----------------CCCCEEEEEecCCc-------------------------------------------------
Confidence 12456777776632
Q ss_pred ccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHH
Q 007362 515 YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (606)
Q Consensus 515 ~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie 594 (606)
..+.+.+++||+.++.|..++.++...|+... +. .....+++++++.|++. ..++..+.|..++.
T Consensus 263 ~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~-----------~~--~~~~~l~~~~~~~la~~--~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 263 QELDEAVLRRFIKRVYVSLPNEETRLLLLKNL-----------LC--KQGSPLTQKELAQLARM--TDGYSGSDLTALAK 327 (389)
T ss_dssp GGCCHHHHTTCCEEEECCCCCHHHHHHHHHHH-----------HT--TSCCCSCHHHHHHHHHH--TTTCCHHHHHHHHH
T ss_pred hhcCHHHHcCcceEEEcCCcCHHHHHHHHHHH-----------HH--hcCCCCCHHHHHHHHHH--cCCCCHHHHHHHHH
Confidence 12678888999999999999999998888642 11 22345888899999987 34566678888887
Q ss_pred HHHHHHHHh
Q 007362 595 SILTEAMYE 603 (606)
Q Consensus 595 ~~l~~al~~ 603 (606)
.....++.+
T Consensus 328 ~a~~~~~re 336 (389)
T 3vfd_A 328 DAALGPIRE 336 (389)
T ss_dssp HHTTHHHHT
T ss_pred HHHHHHHHh
Confidence 776666554
No 24
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=1.7e-19 Score=201.51 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=158.5
Q ss_pred ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHH
Q 007362 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (606)
Q Consensus 263 ~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lA 342 (606)
...++.+.|++.++|++++++.+.+.+... .+ .. .....+++|+||||||||++|
T Consensus 71 ~~~~~~~~l~~di~G~~~vk~~i~~~~~l~--~~---~~--------------------~~~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 71 DLKEAGRLLDEEHHGLEKVKERILEYLAVQ--KL---TK--------------------SLKGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CTTTGGGTHHHHCSSCHHHHHHHHHHHHHH--HH---SS--------------------SCCSCEEEEESSSSSSHHHHH
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH--Hh---cc--------------------cCCCCEEEEECCCCCCHHHHH
Confidence 344566778888999999999997766311 11 00 012378999999999999999
Q ss_pred HHHHHHhCCceeecchhhhhhc--------CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccC
Q 007362 343 KTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (606)
Q Consensus 343 ralA~~l~~~fi~i~~s~l~~s--------g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~ 414 (606)
++||+.++.+|+.+++..+... .|+|.. ...+...|..+.. ..+||||||||++..+++.
T Consensus 126 r~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~~-----~~~vl~lDEid~l~~~~~~------ 193 (543)
T 3m6a_A 126 KSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAGK-----LNPVFLLDEIDKMSSDFRG------ 193 (543)
T ss_dssp HHHHHHHTCEEEEECCCC---------------------CHHHHHHTTCS-----SSEEEEEEESSSCC-----------
T ss_pred HHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhhc-----cCCEEEEhhhhhhhhhhcc------
Confidence 9999999999999988764321 234433 2223334443321 4459999999999876321
Q ss_pred cchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccccccc
Q 007362 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGV 494 (606)
Q Consensus 415 ~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~ 494 (606)
..++.||+.||..... .+........++..+++||+|+|..
T Consensus 194 ----~~~~~LL~~ld~~~~~------~~~~~~~~~~~~~~~v~iI~ttN~~----------------------------- 234 (543)
T 3m6a_A 194 ----DPSSAMLEVLDPEQNS------SFSDHYIEETFDLSKVLFIATANNL----------------------------- 234 (543)
T ss_dssp --------CCGGGTCTTTTT------BCCCSSSCCCCBCSSCEEEEECSST-----------------------------
T ss_pred ----CHHHHHHHHHhhhhcc------eeecccCCeeecccceEEEeccCcc-----------------------------
Confidence 2678899999842211 1112222334566888999888742
Q ss_pred chhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHH
Q 007362 495 TDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRV 574 (606)
Q Consensus 495 ~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~ 574 (606)
..++|+|++||+ +|.|++++.++..+|+..++ .+++.+........+.+++++++.
T Consensus 235 --------------------~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l---~~~~~~~~~~~~~~i~i~~~~l~~ 290 (543)
T 3m6a_A 235 --------------------ATIPGPLRDRME-IINIAGYTEIEKLEIVKDHL---LPKQIKEHGLKKSNLQLRDQAILD 290 (543)
T ss_dssp --------------------TTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTH---HHHHHHHTTCCGGGCEECHHHHHH
T ss_pred --------------------ccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHH---HHHHHHHcCCCcccccCCHHHHHH
Confidence 137899999995 78999999999999998763 444444333333467899999999
Q ss_pred HHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 575 IAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 575 La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
|++ .|....|+|+|++.|++++..+...
T Consensus 291 l~~-~~~~~~~vR~L~~~i~~~~~~aa~~ 318 (543)
T 3m6a_A 291 IIR-YYTREAGVRSLERQLAAICRKAAKA 318 (543)
T ss_dssp HHH-HHCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHH-hCChhhchhHHHHHHHHHHHHHHHH
Confidence 887 3566678899999999998876543
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=184.85 Aligned_cols=221 Identities=19% Similarity=0.270 Sum_probs=155.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
.|+|++.+++.|.+++...... .. ........+.++||+||||||||++|+++|+.++.+|
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~---~~----------------~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 145 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLR---PD----------------IFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF 145 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC---TT----------------TSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred HhCChHHHHHHHHHHHHHHhhC---hH----------------hHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 3899999999999988532211 11 1111223458999999999999999999999999999
Q ss_pred eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee
Q 007362 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (606)
Q Consensus 354 i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~ 433 (606)
+.+++.++.. .|+|.. +..++.+|..+.. ..++||||||||.+...+... .......+++.||..|++...
T Consensus 146 ~~i~~~~l~~-~~~g~~-~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 146 FSISASSLTS-KWVGEG-EKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp EEEEGGGGCC-SSTTHH-HHHHHHHHHHHHH----TCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC---
T ss_pred EEEehHHhhc-cccchH-HHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccc
Confidence 9999998874 477765 5667777766543 367899999999997764321 122334688999999986321
Q ss_pred ecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhh
Q 007362 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (606)
Q Consensus 434 ~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~ 513 (606)
. ...+++||+++|..
T Consensus 217 ~-----------------~~~~v~vI~atn~~------------------------------------------------ 231 (357)
T 3d8b_A 217 S-----------------SEDRILVVGATNRP------------------------------------------------ 231 (357)
T ss_dssp ------------------CCCCEEEEEEESCG------------------------------------------------
T ss_pred c-----------------CCCCEEEEEecCCh------------------------------------------------
Confidence 1 12456777776632
Q ss_pred hccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHH
Q 007362 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (606)
Q Consensus 514 ~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~I 593 (606)
..+.+.+++||+..+.+..++.++..+|+... +.. ..+.++++.++.|++.. .++..+.|+.++
T Consensus 232 -~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~-----------~~~--~~~~l~~~~l~~la~~t--~G~s~~dl~~l~ 295 (357)
T 3d8b_A 232 -QEIDEAARRRLVKRLYIPLPEASARKQIVINL-----------MSK--EQCCLSEEEIEQIVQQS--DAFSGADMTQLC 295 (357)
T ss_dssp -GGBCHHHHTTCCEEEECCCCCHHHHHHHHHHH-----------HHT--SCBCCCHHHHHHHHHHT--TTCCHHHHHHHH
T ss_pred -hhCCHHHHhhCceEEEeCCcCHHHHHHHHHHH-----------Hhh--cCCCccHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 12567888899999999999999988887642 111 23457889999999873 566678898888
Q ss_pred HHHHHHHHHh
Q 007362 594 ESILTEAMYE 603 (606)
Q Consensus 594 e~~l~~al~~ 603 (606)
......++-+
T Consensus 296 ~~a~~~~ir~ 305 (357)
T 3d8b_A 296 REASLGPIRS 305 (357)
T ss_dssp HHHHTHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777666543
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=2.3e-18 Score=176.14 Aligned_cols=221 Identities=26% Similarity=0.342 Sum_probs=153.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|+|++.+++.|.+.+...... .. ....+..++.++||+||||||||++|+++|+.++.+|+
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~---~~----------------~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVR---PE----------------LFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHC---GG----------------GSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred hCChHHHHHHHHHHHHhhhhC---HH----------------HHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 899999999999888532110 11 11112234589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.+++.++. ..+.|.. +..++.+|..+.. ..++||||||+|.+...+.... ......+++.|+..|++....
T Consensus 84 ~i~~~~l~-~~~~~~~-~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 84 NISAASLT-SKYVGDG-EKLVRALFAVARH----MQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp EEESTTTS-SSSCSCH-HHHHHHHHHHHHH----TCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC--
T ss_pred EeeHHHHh-hcccchH-HHHHHHHHHHHHH----cCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhccccc
Confidence 99999877 3466765 5666677766543 3778999999999987644321 112245788899999853211
Q ss_pred cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~ 514 (606)
....++++|+++|..
T Consensus 155 ----------------~~~~~v~vi~~tn~~------------------------------------------------- 169 (297)
T 3b9p_A 155 ----------------PDGDRIVVLAATNRP------------------------------------------------- 169 (297)
T ss_dssp --------------------CEEEEEEESCG-------------------------------------------------
T ss_pred ----------------CCCCcEEEEeecCCh-------------------------------------------------
Confidence 112346677766632
Q ss_pred ccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHH
Q 007362 515 YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (606)
Q Consensus 515 ~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie 594 (606)
..+.+.+++||+..+.++.++.++...|+... +. .....+++++++.|++.. .++..+.|+.+++
T Consensus 170 ~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~-----------~~--~~~~~~~~~~~~~la~~~--~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 170 QELDEAALRRFTKRVYVSLPDEQTRELLLNRL-----------LQ--KQGSPLDTEALRRLAKIT--DGYSGSDLTALAK 234 (297)
T ss_dssp GGBCHHHHHHCCEEEECCCCCHHHHHHHHHHH-----------HG--GGSCCSCHHHHHHHHHHT--TTCCHHHHHHHHH
T ss_pred hhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHH-----------HH--hcCCCCCHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 12567888899999999999998888887642 11 123457889999999873 5666678998888
Q ss_pred HHHHHHHHh
Q 007362 595 SILTEAMYE 603 (606)
Q Consensus 595 ~~l~~al~~ 603 (606)
.....++.+
T Consensus 235 ~a~~~a~r~ 243 (297)
T 3b9p_A 235 DAALEPIRE 243 (297)
T ss_dssp HHTTHHHHT
T ss_pred HHHHHHHHH
Confidence 776666644
No 27
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.79 E-value=1.2e-18 Score=175.87 Aligned_cols=224 Identities=20% Similarity=0.278 Sum_probs=141.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ ++|++.+++.+.+.+... .....++||+||||||||++|+++++.+
T Consensus 4 ~f~~-~ig~~~~~~~~~~~~~~~-----------------------------~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 4 YKDN-LLGEANSFLEVLEQVSHL-----------------------------APLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------------------------TTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cccc-ceeCCHHHHHHHHHHHHH-----------------------------hCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3455 689999988887766411 0113789999999999999999999987
Q ss_pred C---Cceeecchhhhhhc----CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHH
Q 007362 350 N---VPFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (606)
Q Consensus 350 ~---~~fi~i~~s~l~~s----g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~ 422 (606)
. .+|+.++|+.+... .+.|.. ..............+..+.+++|||||||.+... +|+
T Consensus 54 ~~~~~~~~~v~~~~~~~~~~~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~ 118 (265)
T 2bjv_A 54 SRWQGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQE 118 (265)
T ss_dssp TTTTSCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHH
T ss_pred CccCCCeEEEecCCCChhHHHHHhcCCc-ccccccccccccchhhhcCCcEEEEechHhcCHH--------------HHH
Confidence 4 68999999875321 011111 0000000011122344456789999999999887 999
Q ss_pred HHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHH
Q 007362 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSS 502 (606)
Q Consensus 423 ~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ 502 (606)
.|+++|+...+. ..|. ......++.+|+++|.. +++.+.
T Consensus 119 ~Ll~~l~~~~~~--~~g~--------~~~~~~~~~iI~atn~~-~~~~~~------------------------------ 157 (265)
T 2bjv_A 119 KLLRVIEYGELE--RVGG--------SQPLQVNVRLVCATNAD-LPAMVN------------------------------ 157 (265)
T ss_dssp HHHHHHHHCEEC--CCCC----------CEECCCEEEEEESSC-HHHHHH------------------------------
T ss_pred HHHHHHHhCCee--cCCC--------cccccCCeEEEEecCcC-HHHHHH------------------------------
Confidence 999999843322 1111 01123456677777642 222221
Q ss_pred HHhhhcchhhhhccCcccccccCCe-EEEcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCccc--ccCHHHHHHHHH
Q 007362 503 LLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKL--HFTEKALRVIAK 577 (606)
Q Consensus 503 ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l--~i~e~al~~La~ 577 (606)
...|.++|++||+. .+.++++++ +++..++..++..+. + ..+..+ .++++++++|..
T Consensus 158 -----------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~----~---~~~~~~~~~~~~~a~~~L~~ 219 (265)
T 2bjv_A 158 -----------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMC----R---EIKLPLFPGFTERARETLLN 219 (265)
T ss_dssp -----------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHH----H---HTTCSSCCCBCHHHHHHHHH
T ss_pred -----------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHH----H---HhCCCcccCcCHHHHHHHHh
Confidence 12377899999964 689999986 788877775443332 2 123333 699999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHH
Q 007362 578 KATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 578 ~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
+.|..|. |+|+++|+..+..
T Consensus 220 ~~~~gn~--reL~~~l~~~~~~ 239 (265)
T 2bjv_A 220 YRWPGNI--RELKNVVERSVYR 239 (265)
T ss_dssp SCCTTHH--HHHHHHHHHHHHH
T ss_pred CCCCCCH--HHHHHHHHHHHHh
Confidence 8887654 9999999998753
No 28
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.77 E-value=5.5e-18 Score=186.39 Aligned_cols=220 Identities=25% Similarity=0.308 Sum_probs=148.0
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++++|+.|.+.+.. ++ ........+ ...+.++||+||||||||++|+++|+.++
T Consensus 15 f~d-i~G~~~~~~~l~e~v~~-l~---~~~~~~~~g---------------~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 15 FKD-VGGAEEAIEELKEVVEF-LK---DPSKFNRIG---------------ARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GGG-CCSCHHHHHHHHHHHHH-HH---CTHHHHTTT---------------CCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHH-hCCcHHHHHHHHHHHHH-hh---ChHHHhhcC---------------CCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 444 89999999999988741 11 111000000 11246799999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+|+.++++++.. .|+|.. ...++.+|..+... .++||||||||.+..++.....+.+.....+++.||..|++
T Consensus 75 ~~f~~is~~~~~~-~~~g~~-~~~~r~lf~~A~~~----~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~ 148 (476)
T 2ce7_A 75 VPFFHISGSDFVE-LFVGVG-AARVRDLFAQAKAH----APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG 148 (476)
T ss_dssp CCEEEEEGGGTTT-CCTTHH-HHHHHHHHHHHHHT----CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH
T ss_pred CCeeeCCHHHHHH-HHhccc-HHHHHHHHHHHHhc----CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc
Confidence 9999999999884 477776 56677888777543 68999999999998876543333444456789999999985
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
.. ...++++|+++|..+
T Consensus 149 ~~-------------------~~~~viVIaaTn~~~-------------------------------------------- 165 (476)
T 2ce7_A 149 FD-------------------SKEGIIVMAATNRPD-------------------------------------------- 165 (476)
T ss_dssp SC-------------------GGGTEEEEEEESCGG--------------------------------------------
T ss_pred cC-------------------CCCCEEEEEecCChh--------------------------------------------
Confidence 21 123566777666321
Q ss_pred hhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH-HHHHHHHccCCCCCChH
Q 007362 511 DLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGAR 587 (606)
Q Consensus 511 ~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~-al~~La~~a~~~~~GAR 587 (606)
.+.|.++. ||+..+.|..++.++..+|++..+ . ... +.++ .++.|+.. ..++..|
T Consensus 166 -----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~-----------~--~~~--l~~~v~l~~la~~--t~G~sga 223 (476)
T 2ce7_A 166 -----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT-----------R--NKP--LAEDVNLEIIAKR--TPGFVGA 223 (476)
T ss_dssp -----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------T--TSC--BCTTCCHHHHHHT--CTTCCHH
T ss_pred -----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHH-----------H--hCC--CcchhhHHHHHHh--cCCCcHH
Confidence 14556664 999999999999998888875321 1 111 2222 25667665 3445558
Q ss_pred HHHHHHHHHHHHHH
Q 007362 588 GLRAILESILTEAM 601 (606)
Q Consensus 588 ~L~~~Ie~~l~~al 601 (606)
+|.+++.+....+.
T Consensus 224 dL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 224 DLENLVNEAALLAA 237 (476)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999988776654
No 29
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=1.2e-17 Score=167.77 Aligned_cols=222 Identities=22% Similarity=0.281 Sum_probs=148.0
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++++|+.|.+.+.. +.........+ ...+.+++|+||||||||++|+++|+.++
T Consensus 11 ~~~-i~G~~~~~~~l~~~~~~----~~~~~~~~~~~---------------~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 11 FAD-VAGCDEAKEEVAELVEY----LREPSRFQKLG---------------GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GGG-SCSCHHHHHHTHHHHHH----HHCGGGC--------------------CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHH-hcCcHHHHHHHHHHHHH----HhCHHHHHHcC---------------CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 444 89999999999887641 11111111000 11246899999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+|+.+++.++.. .+.|.. ...+..+|+.+... .+++|||||+|.+...+.....+.......+++.|+..|++
T Consensus 71 ~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~a~~~----~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (257)
T 1lv7_A 71 VPFFTISGSDFVE-MFVGVG-ASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144 (257)
T ss_dssp CCEEEECSCSSTT-SCCCCC-HHHHHHHHHHHHTT----CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeHHHHHH-Hhhhhh-HHHHHHHHHHHHHc----CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhC
Confidence 9999999988774 466766 55677777766432 56899999999998765432222222234578888888885
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
.. ...++++|+++|..+
T Consensus 145 ~~-------------------~~~~~~vI~~tn~~~-------------------------------------------- 161 (257)
T 1lv7_A 145 FE-------------------GNEGIIVIAATNRPD-------------------------------------------- 161 (257)
T ss_dssp CC-------------------SSSCEEEEEEESCTT--------------------------------------------
T ss_pred cc-------------------cCCCEEEEEeeCCch--------------------------------------------
Confidence 21 123456666665321
Q ss_pred hhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH-HHHHHHccCCCCCChH
Q 007362 511 DLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-LRVIAKKATAKNTGAR 587 (606)
Q Consensus 511 ~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a-l~~La~~a~~~~~GAR 587 (606)
.+.+.+++ ||+..+.|..++.++..+|+...+ . ... +++++ +..++.. ..++..|
T Consensus 162 -----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~-----------~--~~~--l~~~~~~~~la~~--~~G~~~~ 219 (257)
T 1lv7_A 162 -----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM-----------R--RVP--LAPDIDAAIIARG--TPGFSGA 219 (257)
T ss_dssp -----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------T--TSC--BCTTCCHHHHHHT--CTTCCHH
T ss_pred -----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH-----------h--cCC--CCccccHHHHHHH--cCCCCHH
Confidence 14555655 999999999999988888776421 1 111 22222 4555554 3556789
Q ss_pred HHHHHHHHHHHHHHHh
Q 007362 588 GLRAILESILTEAMYE 603 (606)
Q Consensus 588 ~L~~~Ie~~l~~al~~ 603 (606)
+|+.++++.+..++.+
T Consensus 220 dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 220 DLANLVNEAALFAARG 235 (257)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988877643
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=9.1e-18 Score=170.54 Aligned_cols=216 Identities=26% Similarity=0.359 Sum_probs=142.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHH--HHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 275 VIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~r--l~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
|+|++++++.|.+.+...... ++... -...+.++||+||||||||++|+++|+.++.+
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKV--------------------GIEPPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHH--------------------CCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhc--------------------CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 899999999999888533221 11000 01124789999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH---h
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---E 429 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L---e 429 (606)
|+.+++.++.. .+.|.. ...+..+|..+... .++||||||+|.+..++.....+.. ...+..|+.++ +
T Consensus 79 ~~~v~~~~~~~-~~~~~~-~~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~---~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 79 FIRVVGSELVK-KFIGEG-ASLVKDIFKLAKEK----APSIIFIDEIDAIAAKRTDALTGGD---REVQRTLMQLLAEMD 149 (285)
T ss_dssp EEEEEGGGGCC-CSTTHH-HHHHHHHHHHHHHT----CSEEEEEETTHHHHBCCSSSCCGGG---GHHHHHHHHHHHHHH
T ss_pred EEEEehHHHHH-hccchH-HHHHHHHHHHHHHc----CCeEEEEECHHHhcccCccccCCcc---HHHHHHHHHHHHHhh
Confidence 99999998873 466665 55666777665433 6789999999999876543322222 23455555444 3
Q ss_pred ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcc
Q 007362 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (606)
Q Consensus 430 g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~ 509 (606)
+.. ...++++|+|+|..+
T Consensus 150 ~~~-------------------~~~~~~vI~ttn~~~------------------------------------------- 167 (285)
T 3h4m_A 150 GFD-------------------ARGDVKIIGATNRPD------------------------------------------- 167 (285)
T ss_dssp TTC-------------------SSSSEEEEEECSCGG-------------------------------------------
T ss_pred CCC-------------------CCCCEEEEEeCCCch-------------------------------------------
Confidence 211 113566777766321
Q ss_pred hhhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChH
Q 007362 510 SDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGAR 587 (606)
Q Consensus 510 ~~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR 587 (606)
.+.+.+++ ||+.++.|+.++.++..+|+... +...... .+..++.|+.. ..++..|
T Consensus 168 ------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~-----------~~~~~~~---~~~~~~~l~~~--~~g~~~~ 225 (285)
T 3h4m_A 168 ------ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH-----------TRKMNLA---EDVNLEEIAKM--TEGCVGA 225 (285)
T ss_dssp ------GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHH-----------HTTSCBC---TTCCHHHHHHH--CTTCCHH
T ss_pred ------hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHH-----------HhcCCCC---CcCCHHHHHHH--cCCCCHH
Confidence 14566666 99999999999999999988642 1111211 11224555655 3455667
Q ss_pred HHHHHHHHHHHHHHHh
Q 007362 588 GLRAILESILTEAMYE 603 (606)
Q Consensus 588 ~L~~~Ie~~l~~al~~ 603 (606)
.|+.++......++.+
T Consensus 226 ~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888777766654
No 31
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.76 E-value=1.2e-18 Score=180.89 Aligned_cols=221 Identities=19% Similarity=0.286 Sum_probs=145.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---C
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---N 350 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~ 350 (606)
.++|++.+++.+...+... +....+|||+||||||||++|++|++.+ +
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------------------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~ 53 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------------------------APSDATVLIHGDSGTGKELVARALHACSARSD 53 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------------------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS
T ss_pred CcEECCHHHHHHHHHHHHH-----------------------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccC
Confidence 4789999888887776411 1123789999999999999999999976 5
Q ss_pred Cceeecchhhhhhc----CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHH
Q 007362 351 VPFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (606)
Q Consensus 351 ~~fi~i~~s~l~~s----g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~ 426 (606)
.+|+.++|..+... .+.|+... ............+..+.+++||||||+.+... +|..|+.
T Consensus 54 ~~~v~v~~~~~~~~l~~~~lfg~~~g-~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~Ll~ 118 (304)
T 1ojl_A 54 RPLVTLNCAALNESLLESELFGHEKG-AFTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRLLR 118 (304)
T ss_dssp SCCCEEECSSCCHHHHHHHHTCCCSS-CCC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHHHH
T ss_pred CCeEEEeCCCCChHHHHHHhcCcccc-ccCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHHHH
Confidence 78999998865321 11111100 00000001123344557799999999999887 9999999
Q ss_pred HHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhh
Q 007362 427 MLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLES 506 (606)
Q Consensus 427 ~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~ 506 (606)
+|+...+. ..|... ....++.+|+++|. ++++.+.++
T Consensus 119 ~l~~~~~~--~~g~~~--------~~~~~~riI~atn~-~l~~~v~~g-------------------------------- 155 (304)
T 1ojl_A 119 AIQEREVQ--RVGSNQ--------TISVDVRLIAATHR-DLAEEVSAG-------------------------------- 155 (304)
T ss_dssp HHHSSBCC--BTTBCC--------CCBCCCEEEEEESS-CHHHHHHHT--------------------------------
T ss_pred HHhcCEee--ecCCcc--------cccCCeEEEEecCc-cHHHHHHhC--------------------------------
Confidence 99954322 111111 11234566777664 344444322
Q ss_pred hcchhhhhccCcccccccCCe-EEEcCCcC--HHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCC
Q 007362 507 VESSDLIAYGLIPEFVGRFPI-LVSLTALT--EDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKN 583 (606)
Q Consensus 507 ~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls--~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~ 583 (606)
.|.++|++||+. .|.+++|. .+|+..++..++..+. ..+.. ....+++++++.|..+.|..|
T Consensus 156 ---------~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~----~~~~~--~~~~~s~~a~~~L~~~~wpGn 220 (304)
T 1ojl_A 156 ---------RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFA----ERNRK--VVKGFTPQAMDLLIHYDWPGN 220 (304)
T ss_dssp ---------SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHH----HHTTC--CCCCBCHHHHHHHHHCCCSSH
T ss_pred ---------CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHH----HHhcc--CccCCCHHHHHHHHcCCCCCC
Confidence 277888999965 58899999 5788888876544332 22211 234699999999999988766
Q ss_pred CChHHHHHHHHHHHH
Q 007362 584 TGARGLRAILESILT 598 (606)
Q Consensus 584 ~GAR~L~~~Ie~~l~ 598 (606)
. |+|+++|++.+.
T Consensus 221 v--ReL~~~l~~~~~ 233 (304)
T 1ojl_A 221 I--RELENAIERAVV 233 (304)
T ss_dssp H--HHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHH
Confidence 5 999999998875
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=166.39 Aligned_cols=219 Identities=21% Similarity=0.240 Sum_probs=133.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|+|++++|+.|.+.+.. +........ .-...+.++||+||||||||++|+++|+.++.+|+
T Consensus 8 i~G~~~~~~~l~~~~~~----~~~~~~~~~---------------~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 8 VAGMHEAKLEVREFVDY----LKSPERFLQ---------------LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp SCSCHHHHHHHHHHHHH----HHCCC---------------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred hCCHHHHHHHHHHHHHH----HHCHHHHHH---------------cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 89999999999887741 111110000 00123478999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccc-cCcchhHHHHHHHHHHhceee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEGTIV 433 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~-~~~s~~~vq~~LL~~Leg~~~ 433 (606)
.+++.++.. .+.+.. ...+..+|..+... .++||||||+|.+...+.....+ ........++.|+..+++..
T Consensus 69 ~~~~~~~~~-~~~~~~-~~~~~~~~~~a~~~----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~- 141 (262)
T 2qz4_A 69 AMAGAEFVE-VIGGLG-AARVRSLFKEARAR----APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG- 141 (262)
T ss_dssp EEETTTTSS-SSTTHH-HHHHHHHHHHHHHT----CSEEEEEECC-------------------CHHHHHHHHHHHTCC-
T ss_pred EechHHHHh-hccChh-HHHHHHHHHHHHhc----CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-
Confidence 999998763 355554 55666777665432 57899999999997664322111 01111235667777776411
Q ss_pred ecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhh
Q 007362 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (606)
Q Consensus 434 ~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~ 513 (606)
...++++|+++|..+
T Consensus 142 ------------------~~~~~~vi~~tn~~~----------------------------------------------- 156 (262)
T 2qz4_A 142 ------------------TTDHVIVLASTNRAD----------------------------------------------- 156 (262)
T ss_dssp ------------------TTCCEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------CCCCEEEEecCCChh-----------------------------------------------
Confidence 123566777666321
Q ss_pred hccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH-HHHHHHHccCCCCCChHHHH
Q 007362 514 AYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARGLR 590 (606)
Q Consensus 514 ~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~-al~~La~~a~~~~~GAR~L~ 590 (606)
.+.+.+++ ||+..+.|..++.++..+|+...+..+ + +..+.+ ..+.|+.. ..++..+.|+
T Consensus 157 --~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~-----------~--~~~~~~~~~~~l~~~--~~g~~~~~l~ 219 (262)
T 2qz4_A 157 --ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL-----------K--LTQSSTFYSQRLAEL--TPGFSGADIA 219 (262)
T ss_dssp --GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT-----------T--CCBTHHHHHHHHHHT--CTTCCHHHHH
T ss_pred --hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC-----------C--CCcchhhHHHHHHHH--CCCCCHHHHH
Confidence 14566777 999999999999999999887542211 2 223333 34666665 3445557888
Q ss_pred HHHHHHHHHHH
Q 007362 591 AILESILTEAM 601 (606)
Q Consensus 591 ~~Ie~~l~~al 601 (606)
.++.+....++
T Consensus 220 ~l~~~a~~~a~ 230 (262)
T 2qz4_A 220 NICNEAALHAA 230 (262)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHH
Confidence 88877665554
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.73 E-value=7e-17 Score=168.14 Aligned_cols=207 Identities=23% Similarity=0.300 Sum_probs=143.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ ++|++.+++.|..++..... .. ....++||+||||||||++|+++|+.++
T Consensus 28 ~~~-iiG~~~~~~~l~~~l~~~~~----~~----------------------~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 28 FDG-YIGQESIKKNLNVFIAAAKK----RN----------------------ECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp GGG-CCSCHHHHHHHHHHHHHHHH----TT----------------------SCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHH-hCChHHHHHHHHHHHHHHHh----cC----------------------CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 444 79999999999888752210 00 1236899999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+|+.+++..+.. ...+...+.. .+.+++|||||||.+... +++.|+..|+.
T Consensus 81 ~~~~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~ 132 (338)
T 3pfi_A 81 ANIKTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAMED 132 (338)
T ss_dssp CCEEEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHT
T ss_pred CCeEEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHHh
Confidence 9999999876531 2233333332 236799999999999877 99999999995
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
..+.+-.... .....+.++..++++|+++|..
T Consensus 133 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~atn~~--------------------------------------------- 164 (338)
T 3pfi_A 133 YRLDIIIGSG---PAAQTIKIDLPKFTLIGATTRA--------------------------------------------- 164 (338)
T ss_dssp SCC------------CCCCCCCCCCCEEEEEESCG---------------------------------------------
T ss_pred ccchhhcccC---ccccceecCCCCeEEEEeCCCc---------------------------------------------
Confidence 4432211000 0001112233356777776631
Q ss_pred hhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHH
Q 007362 511 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (606)
Q Consensus 511 ~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~ 590 (606)
..+.++|++||+.++.|.+++.+++..++..... .. .+.+++++++.|++ .|..+ .|.+.
T Consensus 165 ----~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~-----------~~--~~~~~~~~~~~l~~-~~~G~--~r~l~ 224 (338)
T 3pfi_A 165 ----GMLSNPLRDRFGMQFRLEFYKDSELALILQKAAL-----------KL--NKTCEEKAALEIAK-RSRST--PRIAL 224 (338)
T ss_dssp ----GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH-----------HT--TCEECHHHHHHHHH-TTTTC--HHHHH
T ss_pred ----cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHH-----------hc--CCCCCHHHHHHHHH-HHCcC--HHHHH
Confidence 1267889999999999999999999888774311 11 25589999999999 45544 58999
Q ss_pred HHHHHHHHHH
Q 007362 591 AILESILTEA 600 (606)
Q Consensus 591 ~~Ie~~l~~a 600 (606)
++++..+..+
T Consensus 225 ~~l~~~~~~a 234 (338)
T 3pfi_A 225 RLLKRVRDFA 234 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998875443
No 34
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.73 E-value=5.2e-17 Score=179.38 Aligned_cols=216 Identities=22% Similarity=0.325 Sum_probs=154.1
Q ss_pred cCCHHHHHHHHHHHHHHHHH--HHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 275 VIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~--rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
|+|++.+++.|.+++..... .++... -..++.++||+||||||||++|++||+.++.+
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~--------------------g~~~~~~vLL~GppGtGKT~lAraia~~~~~~ 265 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAI--------------------GVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHH--------------------TCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhc--------------------CCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 89999999999998863321 111110 01234789999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~ 432 (606)
|+.+++.++. ..|.|+. ...++.+|..+... .++||||||||.+..++.... ......+++.|+.+|++..
T Consensus 266 fv~vn~~~l~-~~~~g~~-~~~~~~~f~~A~~~----~p~iLfLDEId~l~~~~~~~~---~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp EEEEEHHHHH-TSCTTHH-HHHHHHHHHHHHHT----CSEEEEEESHHHHCBCTTSCC---CHHHHHHHHHHHHHHHHSC
T ss_pred EEEEEchHhh-hhhcchh-HHHHHHHHHHHHhc----CCcEEEecchhhhcccccccc---chHHHHHHHHHHHHhhccc
Confidence 9999999988 4577776 56677888777543 678999999999988654321 1122469999999999521
Q ss_pred eecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhh
Q 007362 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (606)
Q Consensus 433 ~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l 512 (606)
...++++|+++|..+
T Consensus 337 -------------------~~~~v~vIaaTn~~~---------------------------------------------- 351 (489)
T 3hu3_A 337 -------------------QRAHVIVMAATNRPN---------------------------------------------- 351 (489)
T ss_dssp -------------------TTSCEEEEEEESCGG----------------------------------------------
T ss_pred -------------------cCCceEEEEecCCcc----------------------------------------------
Confidence 123567777766321
Q ss_pred hhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHH
Q 007362 513 IAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (606)
Q Consensus 513 ~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~ 590 (606)
.+.+.+.+ ||+..+.|..++.++..+|+... .....+.. +..++.|+.. ..++..+.|.
T Consensus 352 ---~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~-------------~~~~~l~~-~~~l~~la~~--t~g~s~~dL~ 412 (489)
T 3hu3_A 352 ---SIDPALRRFGRFDREVDIGIPDATGRLEILQIH-------------TKNMKLAD-DVDLEQVANE--THGHVGADLA 412 (489)
T ss_dssp ---GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH-------------TTTSCBCT-TCCHHHHHHT--CTTCCHHHHH
T ss_pred ---ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHH-------------HhcCCCcc-hhhHHHHHHH--ccCCcHHHHH
Confidence 15567766 89999999999999999988742 11222221 2235667765 4567778999
Q ss_pred HHHHHHHHHHHHh
Q 007362 591 AILESILTEAMYE 603 (606)
Q Consensus 591 ~~Ie~~l~~al~~ 603 (606)
.++.+....++.+
T Consensus 413 ~L~~~A~~~a~r~ 425 (489)
T 3hu3_A 413 ALCSEAALQAIRK 425 (489)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9998888877654
No 35
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.72 E-value=1.5e-16 Score=175.82 Aligned_cols=220 Identities=25% Similarity=0.317 Sum_probs=146.0
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++++|+.|.+.+.. |. ........+ + ..+.+++|+||||||||+||++||..++
T Consensus 30 f~d-v~G~~~~k~~l~~lv~~-l~---~~~~~~~lg--------------~-~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 30 FKD-VAGAEEAKEELKEIVEF-LK---NPSRFHEMG--------------A-RIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTS-SCSCHHHHHHHHHHHHH-HH---CGGGTTTTS--------------C-CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHH-cCCcHHHHHHHHHHHHH-hh---chhhhhhcc--------------C-CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344 89999999999887741 11 111111100 1 1236799999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+|+.+++.++.. .++|.. ...++.+|+.+... .++||||||||.+...+.....+.+.....+++.|+..|+|
T Consensus 90 ~~~i~i~g~~~~~-~~~g~~-~~~v~~lfq~a~~~----~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 90 VPFITASGSDFVE-MFVGVG-AARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp CCEEEEEGGGGTS-SCTTHH-HHHHHHHTTTSSSS----SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred CCEEEEehhHHHH-hhhhhH-HHHHHHHHHHHHhc----CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 9999999998874 466665 45577777766432 56899999999987664432111222234678889988886
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
... .+.+++|++++..+
T Consensus 164 ~~~-------------------~~~viviAatn~p~-------------------------------------------- 180 (499)
T 2dhr_A 164 FEK-------------------DTAIVVMAATNRPD-------------------------------------------- 180 (499)
T ss_dssp CCS-------------------SCCCEEEECCSCGG--------------------------------------------
T ss_pred ccc-------------------CccEEEEEecCChh--------------------------------------------
Confidence 321 12345555555321
Q ss_pred hhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH-HHHHHHccCCCCCChH
Q 007362 511 DLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-LRVIAKKATAKNTGAR 587 (606)
Q Consensus 511 ~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a-l~~La~~a~~~~~GAR 587 (606)
.+++++++ ||+..|.|..++.++..+|+... ..+ +.+++++ +..|+.. +.. +..|
T Consensus 181 -----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~-------------~~~--~~l~~dv~l~~lA~~-t~G-~~ga 238 (499)
T 2dhr_A 181 -----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-------------ARG--KPLAEDVDLALLAKR-TPG-FVGA 238 (499)
T ss_dssp -----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHT-------------TSS--SCCCCSSTTHHHHTT-SCS-CCHH
T ss_pred -----hcCcccccccccceEEecCCCCHHHHHHHHHHH-------------Hhc--CCCChHHHHHHHHHh-cCC-CCHH
Confidence 15667776 89999999999999988887642 112 2244333 5666654 444 4448
Q ss_pred HHHHHHHHHHHHHH
Q 007362 588 GLRAILESILTEAM 601 (606)
Q Consensus 588 ~L~~~Ie~~l~~al 601 (606)
+|++++++....+.
T Consensus 239 dL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 239 DLENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988766554
No 36
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.70 E-value=5.1e-17 Score=177.55 Aligned_cols=196 Identities=26% Similarity=0.332 Sum_probs=134.5
Q ss_pred hhhhhcCCHHHHH---HHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHH
Q 007362 270 GLDKFVIGQEKAK---KVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 270 ~L~~~VvGqe~ak---~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA 346 (606)
.|++ ++||++++ +.|..++... ...++||+||||||||++|++||
T Consensus 24 ~l~~-ivGq~~~~~~~~~L~~~i~~~-------------------------------~~~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 24 NLAQ-YIGQQHLLAAGKPLPRAIEAG-------------------------------HLHSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp STTT-CCSCHHHHSTTSHHHHHHHHT-------------------------------CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHH-hCCcHHHHhchHHHHHHHHcC-------------------------------CCcEEEEECCCCCcHHHHHHHHH
Confidence 3444 89999999 6777666411 01579999999999999999999
Q ss_pred HHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHH
Q 007362 347 RHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (606)
Q Consensus 347 ~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~ 426 (606)
+.++.+|+.+++.... ...++.++..+........++||||||||.+... .|+.||.
T Consensus 72 ~~~~~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~ 128 (447)
T 3pvs_A 72 RYANADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLP 128 (447)
T ss_dssp HHTTCEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHH
T ss_pred HHhCCCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHH
Confidence 9999999998875421 2344555555544334457899999999999877 8999999
Q ss_pred HHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhh
Q 007362 427 MLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLES 506 (606)
Q Consensus 427 ~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~ 506 (606)
.||.. .+++|++++..
T Consensus 129 ~le~~-----------------------~v~lI~att~n----------------------------------------- 144 (447)
T 3pvs_A 129 HIEDG-----------------------TITFIGATTEN----------------------------------------- 144 (447)
T ss_dssp HHHTT-----------------------SCEEEEEESSC-----------------------------------------
T ss_pred HHhcC-----------------------ceEEEecCCCC-----------------------------------------
Confidence 99831 23445443311
Q ss_pred hcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCCh
Q 007362 507 VESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGA 586 (606)
Q Consensus 507 ~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GA 586 (606)
....+.+.|++|+. ++.|.+++.+++..++...+.... +. .....+.++++++++|+++ +. -++
T Consensus 145 ------~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~----~~--~~~~~~~i~~~al~~L~~~-~~--Gd~ 208 (447)
T 3pvs_A 145 ------PSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKT----RG--YGGQDIVLPDETRRAIAEL-VN--GDA 208 (447)
T ss_dssp ------GGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTT----TS--STTSSEECCHHHHHHHHHH-HC--SCH
T ss_pred ------cccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHh----hh--hccccCcCCHHHHHHHHHH-CC--CCH
Confidence 01236788999986 777999999999999876422110 00 0124567999999999998 33 356
Q ss_pred HHHHHHHHHHHHHH
Q 007362 587 RGLRAILESILTEA 600 (606)
Q Consensus 587 R~L~~~Ie~~l~~a 600 (606)
|.+.++++..+..+
T Consensus 209 R~lln~Le~a~~~a 222 (447)
T 3pvs_A 209 RRALNTLEMMADMA 222 (447)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887643
No 37
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.70 E-value=3.3e-16 Score=160.28 Aligned_cols=222 Identities=20% Similarity=0.274 Sum_probs=144.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|.|++++|+.|.+.+...|.... . ++. . .+ ..+.+++|+||||||||+++++||..++..++
T Consensus 12 i~g~~~~~~~l~~~i~~~~~~~~---~---------l~~---~--~l-~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 12 IGALEDIREELTMAILAPVRNPD---Q---------FKA---L--GL-VTPAGVLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp CCHHHHHHHHHHHHHTHHHHSHH---H---------HHH---T--TC-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhCHH---H---------HHH---c--CC-CCCCeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 89999999999998865543210 0 000 0 01 11366999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.+++.++.. .|+++. +..+..+|+.+... .++++|+||+|.+...+...... ....+.+.++..|+|...
T Consensus 74 ~i~g~~l~~-~~~~~~-~~~i~~vf~~a~~~----~p~i~~~Deid~~~~~r~~~~~~---~~~~~~~~~l~~Lsgg~~- 143 (274)
T 2x8a_A 74 SVKGPELLN-MYVGES-ERAVRQVFQRAKNS----APCVIFFDEVDALCPRRSDRETG---ASVRVVNQLLTEMDGLEA- 143 (274)
T ss_dssp EEETTTTCS-STTHHH-HHHHHHHHHHHHHT----CSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCS-
T ss_pred EEEcHHHHh-hhhhHH-HHHHHHHHHHHHhc----CCCeEeeehhhhhhcccCCCcch---HHHHHHHHHHHhhhcccc-
Confidence 999988763 466655 56677888776433 57899999999876654321111 112478899999986321
Q ss_pred cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~ 514 (606)
.+.+++++++|..
T Consensus 144 ------------------~~~~i~ia~tn~p------------------------------------------------- 156 (274)
T 2x8a_A 144 ------------------RQQVFIMAATNRP------------------------------------------------- 156 (274)
T ss_dssp ------------------TTCEEEEEEESCG-------------------------------------------------
T ss_pred ------------------cCCEEEEeecCCh-------------------------------------------------
Confidence 1223444444421
Q ss_pred ccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccC-HHHHHHHHHccCCCCCChHHHHH
Q 007362 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFT-EKALRVIAKKATAKNTGARGLRA 591 (606)
Q Consensus 515 ~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~-e~al~~La~~a~~~~~GAR~L~~ 591 (606)
..++|+++. |||..|.++.++.++..+|++.. ++. .....++ +-.++.|+...-..+|...+|..
T Consensus 157 ~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~-----------~~~-~~~~~~~~~~~~~~la~~~~~~g~sgadl~~ 224 (274)
T 2x8a_A 157 DIIDPAILRPGRLDKTLFVGLPPPADRLAILKTI-----------TKN-GTKPPLDADVNLEAIAGDLRCDCYTGADLSA 224 (274)
T ss_dssp GGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHH-----------TTT-TBTTBBCTTCCHHHHHTCSGGGSCCHHHHHH
T ss_pred hhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHH-----------Hhc-ccCCCCccccCHHHHHHhhccCCcCHHHHHH
Confidence 125677776 99999999999999999988742 111 1111111 22256667653334677778999
Q ss_pred HHHHHHHHHHHh
Q 007362 592 ILESILTEAMYE 603 (606)
Q Consensus 592 ~Ie~~l~~al~~ 603 (606)
++.+....++.+
T Consensus 225 l~~~a~~~a~~~ 236 (274)
T 2x8a_A 225 LVREASICALRQ 236 (274)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.69 E-value=9.6e-17 Score=165.57 Aligned_cols=129 Identities=16% Similarity=0.264 Sum_probs=83.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~ 404 (606)
+.++||+||||||||++|++||+.++.+|+.++++++. ..|+|.. +..++.+|..+...+....++||||||||++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 47899999999999999999999999999999999987 4588877 667778887775444445789999999999887
Q ss_pred hhhccccccCcchhHHHHHHHHHHhcee-eecCCCCcccCCCCCcEEEecCceeeeccCCCc
Q 007362 405 KAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (606)
Q Consensus 405 ~r~~~~~~~~~s~~~vq~~LL~~Leg~~-~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~ 465 (606)
.+.. ..........+++.|+++||+.. +.+.+. .......+++||+|+|..
T Consensus 114 ~~~~-~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~---------~~~~~~~~v~vI~ttN~~ 165 (293)
T 3t15_A 114 RMGG-TTQYTVNNQMVNATLMNIADNPTNVQLPGM---------YNKQENARVPIIVTGNDF 165 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC--------------------CCCCCCEEEECSSC
T ss_pred CCCC-CccccchHHHHHHHHHHHhccccccccccc---------cccccCCCcEEEEecCCc
Confidence 4332 11222234568899999998432 111111 012245678888888743
No 39
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.69 E-value=3.3e-17 Score=174.65 Aligned_cols=210 Identities=22% Similarity=0.368 Sum_probs=148.3
Q ss_pred CCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCC--ceeecchhhhhhcCCcccchHHHHHHHHHh--
Q 007362 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQAGYVGEDVESILYKLLAQ-- 381 (606)
Q Consensus 306 g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~--~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~-- 381 (606)
|.++.+..+.+....++.....++++|++||||+++|+++++..+. .|+.++|..+.+. -....+|..
T Consensus 133 g~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~--------~~~~~lfg~~~ 204 (368)
T 3dzd_A 133 GEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQE--------LAESELFGHEK 204 (368)
T ss_dssp CCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTT--------THHHHHHEECS
T ss_pred ccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChH--------HHHHHhcCccc
Confidence 4445555555555555556688999999999999999999998854 3999999876422 111233432
Q ss_pred ---------hhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc-eeeecCCCCcccCCCCCcEEE
Q 007362 382 ---------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDSIQM 451 (606)
Q Consensus 382 ---------a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg-~~~~i~~~g~~~~~~~~~v~i 451 (606)
..+.+..+.+++||||||+.++.. +|..||++|+. ....+.+. ..+.
T Consensus 205 g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~~~~- 261 (368)
T 3dzd_A 205 GAFTGALTRKKGKLELADQGTLFLDEVGELDQR--------------VQAKLLRVLETGSFTRLGGN--------QKIE- 261 (368)
T ss_dssp CSSSSCCCCEECHHHHTTTSEEEEETGGGSCHH--------------HHHHHHHHHHHSEECCBTCC--------CBEE-
T ss_pred cccCCcccccCChHhhcCCCeEEecChhhCCHH--------------HHHHHHHHHHhCCcccCCCC--------ccee-
Confidence 223456678899999999999988 99999999994 33333221 1122
Q ss_pred ecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEE
Q 007362 452 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVS 530 (606)
Q Consensus 452 dt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~ 530 (606)
.++-+|++++ .++.+.+.+++ |.++|+.|+.. .|.
T Consensus 262 --~~~rii~at~-~~l~~~v~~g~-----------------------------------------fr~dL~~rl~~~~i~ 297 (368)
T 3dzd_A 262 --VDIRVISATN-KNLEEEIKKGN-----------------------------------------FREDLYYRLSVFQIY 297 (368)
T ss_dssp --CCCEEEEEES-SCHHHHHHTTS-----------------------------------------SCHHHHHHHTSEEEE
T ss_pred --eeeEEEEecC-CCHHHHHHcCC-----------------------------------------ccHHHHHHhCCeEEe
Confidence 2444666665 45665555433 67788888877 488
Q ss_pred cCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 531 LTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 531 f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
++||.+ +|+..++..++..+.++ +. .....+++++++.|..+.|++|. |+|+++|++.+.
T Consensus 298 lPpLreR~~Di~~l~~~~l~~~~~~----~~--~~~~~~~~~a~~~L~~~~wpGNv--reL~n~i~~~~~ 359 (368)
T 3dzd_A 298 LPPLRERGKDVILLAEYFLKKFAKE----YK--KNCFELSEETKEYLMKQEWKGNV--RELKNLIERAVI 359 (368)
T ss_dssp CCCGGGSTTHHHHHHHHHHHHHHHH----TT--CCCCCBCHHHHHHHHTCCCTTHH--HHHHHHHHHHHH
T ss_pred CCChhhchhhHHHHHHHHHHHHHHH----cC--CCCCCcCHHHHHHHHhCCCCcHH--HHHHHHHHHHHH
Confidence 999998 89988888754444332 21 22356999999999999999887 999999998875
No 40
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.68 E-value=3.4e-16 Score=167.82 Aligned_cols=211 Identities=17% Similarity=0.329 Sum_probs=154.4
Q ss_pred CCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC---CceeecchhhhhhcCCcccchHHHHHHHHH
Q 007362 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLA 380 (606)
Q Consensus 304 g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~---~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~ 380 (606)
-.+.++.++.+.+....++....+|+|+|++||||+++|++++.... .+|+.++|..+.+. -.-..+|.
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~--------~~~~elfg 210 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRD--------IFEAELFG 210 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHH--------HHHHHHHC
T ss_pred hhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHH--------HHHHHhcC
Confidence 35778889999988888888899999999999999999999999874 69999999875421 11223333
Q ss_pred h-----------hhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee-ecCCCCcccCCCCCc
Q 007362 381 Q-----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV-NVPEKGARKHPRGDS 448 (606)
Q Consensus 381 ~-----------a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~-~i~~~g~~~~~~~~~ 448 (606)
. ..+.+..+.+++||||||+.++.. +|..|+++|+.+.+ .+.+. ..
T Consensus 211 ~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~--------~~ 268 (387)
T 1ny5_A 211 YEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLE--------------AQAKLLRVIESGKFYRLGGR--------KE 268 (387)
T ss_dssp BCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHH--------------HHHHHHHHHHHSEECCBTCC--------SB
T ss_pred CCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCC--------ce
Confidence 2 234456678899999999999988 99999999994433 22211 11
Q ss_pred EEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-
Q 007362 449 IQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI- 527 (606)
Q Consensus 449 v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~- 527 (606)
+ ..++.+|+++| .++++.+.+++ |.++|+.|+..
T Consensus 269 ~---~~~~rii~at~-~~l~~~~~~g~-----------------------------------------fr~dl~~rl~~~ 303 (387)
T 1ny5_A 269 I---EVNVRILAATN-RNIKELVKEGK-----------------------------------------FREDLYYRLGVI 303 (387)
T ss_dssp E---ECCCEEEEEES-SCHHHHHHTTS-----------------------------------------SCHHHHHHHTTE
T ss_pred e---eccEEEEEeCC-CCHHHHHHcCC-----------------------------------------ccHHHHHhhcCC
Confidence 2 23445666665 45555555433 66778888865
Q ss_pred EEEcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcc-cccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 528 LVSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVK-LHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 528 iI~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~-l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
.|.+++|.+ +|+..++..++..+.+++ +.. ..+++++++.|..+.|.+|. |+|+++|++.+.
T Consensus 304 ~i~lPpLreR~~Di~~l~~~~l~~~~~~~-------~~~~~~~~~~a~~~l~~~~wpGNv--reL~~~i~~~~~ 368 (387)
T 1ny5_A 304 EIEIPPLRERKEDIIPLANHFLKKFSRKY-------AKEVEGFTKSAQELLLSYPWYGNV--RELKNVIERAVL 368 (387)
T ss_dssp EEECCCGGGCHHHHHHHHHHHHHHHHHHT-------TCCCCEECHHHHHHHHHSCCTTHH--HHHHHHHHHHHH
T ss_pred eecCCcchhccccHHHHHHHHHHHHHHHc-------CCCCCCCCHHHHHHHHhCCCCcHH--HHHHHHHHHHHH
Confidence 588899886 888888886544443322 223 35999999999999998776 999999999875
No 41
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.68 E-value=1.4e-15 Score=152.28 Aligned_cols=221 Identities=24% Similarity=0.306 Sum_probs=139.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++++++.+...+.. |.. .. .+. +. .+. .+.+++|+||||||||++++++++.++
T Consensus 15 ~~~-i~g~~~~~~~l~~l~~~-~~~---~~---------~~~---~~--~~~-~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 15 FKD-VAGAEEAKEELKEIVEF-LKN---PS---------RFH---EM--GAR-IPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGG-CCSCHHHHHHHHHHHHH-HHC---HH---------HHH---HT--TCC-CCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHH-hCCcHHHHHHHHHHHHH-HHC---HH---------HHH---Hc--CCC-CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 444 89999999999887642 211 00 000 00 011 135699999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+++.+++.++... +.+.. ...+..+|+.+... .++++|+||+|.+...+..............++.|+..|+|
T Consensus 75 ~~~i~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~~----~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g 148 (254)
T 1ixz_A 75 VPFITASGSDFVEM-FVGVG-AARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 148 (254)
T ss_dssp CCEEEEEHHHHHHS-CTTHH-HHHHHHHHHHHTTS----SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT
T ss_pred CCEEEeeHHHHHHH-HhhHH-HHHHHHHHHHHHhc----CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC
Confidence 99999999887643 44544 44566677665422 46899999999887654321111122224577888888885
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
... .+.++++++++..
T Consensus 149 ~~~-------------------~~~~i~~a~t~~p--------------------------------------------- 164 (254)
T 1ixz_A 149 FEK-------------------DTAIVVMAATNRP--------------------------------------------- 164 (254)
T ss_dssp CCT-------------------TCCEEEEEEESCG---------------------------------------------
T ss_pred CCC-------------------CCCEEEEEccCCc---------------------------------------------
Confidence 321 1223344443321
Q ss_pred hhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH-HHHHHHccCCCCCChH
Q 007362 511 DLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-LRVIAKKATAKNTGAR 587 (606)
Q Consensus 511 ~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a-l~~La~~a~~~~~GAR 587 (606)
..+++.+++ ||+..+.|..++.++..+|+... . .+. .+++++ +..|+.. ..++..|
T Consensus 165 ----~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~-----------~--~~~--~~~~~~~~~~la~~--~~G~~~~ 223 (254)
T 1ixz_A 165 ----DILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-----------A--RGK--PLAEDVDLALLAKR--TPGFVGA 223 (254)
T ss_dssp ----GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH-----------H--TTS--CBCTTCCHHHHHHT--CTTCCHH
T ss_pred ----hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH-----------H--cCC--CCCcccCHHHHHHH--cCCCCHH
Confidence 125677776 89999999999999988888632 1 122 233333 6677775 3445568
Q ss_pred HHHHHHHHHHHHHHH
Q 007362 588 GLRAILESILTEAMY 602 (606)
Q Consensus 588 ~L~~~Ie~~l~~al~ 602 (606)
+|+.++++....++.
T Consensus 224 dl~~~~~~a~~~a~~ 238 (254)
T 1ixz_A 224 DLENLLNEAALLAAR 238 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988877764
No 42
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.68 E-value=3.6e-16 Score=162.71 Aligned_cols=206 Identities=20% Similarity=0.248 Sum_probs=126.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCce----eecchhhhhhcCC--------------------cccchHHHH-----H
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF----VIADATTLTQAGY--------------------VGEDVESIL-----Y 376 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~f----i~i~~s~l~~sg~--------------------vG~~~~~~l-----~ 376 (606)
.++||+||||||||++|+++|+.++... ..+++........ .+......+ .
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 6799999999999999999999986310 0012221110000 111111111 1
Q ss_pred HHHHhh-----hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEE
Q 007362 377 KLLAQA-----EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQM 451 (606)
Q Consensus 377 ~lf~~a-----~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~i 451 (606)
..+... ...+..+.++||||||||++..+ +++.|++.|+.....+...|. ....
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~-------~~~~ 184 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGL-------SIRH 184 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTC-------CEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecce-------EEee
Confidence 122211 12234456889999999999887 999999999954433333221 1122
Q ss_pred ecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEc
Q 007362 452 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSL 531 (606)
Q Consensus 452 dt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f 531 (606)
..++++|+++|.. ...+.++|++||+..+.+
T Consensus 185 -~~~~~li~~~n~~------------------------------------------------~~~l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 185 -PARFVLVGSGNPE------------------------------------------------EGDLRPQLLDRFGLSVEV 215 (350)
T ss_dssp -ECCEEEEEEECSC------------------------------------------------SCCCCHHHHTTCSEEEEC
T ss_pred -CCceEEEEEeCCC------------------------------------------------CCCCCHHHHhhcceEEEc
Confidence 2367777776631 012778999999988999
Q ss_pred CCcC-HHHHHHHHhhhHHH-----------------HHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCC-ChHHHHHH
Q 007362 532 TALT-EDQLVKVLTEPKNA-----------------LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNT-GARGLRAI 592 (606)
Q Consensus 532 ~~Ls-~eel~~Il~~~l~~-----------------L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~-GAR~L~~~ 592 (606)
.+++ .++..+|+...+.. +.+.+.. .......+.++++++++|+++.+..+. ++|.+.++
T Consensus 216 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~l 294 (350)
T 1g8p_A 216 LSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILE-ARERLPKVEAPNTALYDCAALCIALGSDGLRGELTL 294 (350)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHH-HHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 9994 56666777652111 0111111 111223457999999999999888787 79999999
Q ss_pred HHHHHHHHHH
Q 007362 593 LESILTEAMY 602 (606)
Q Consensus 593 Ie~~l~~al~ 602 (606)
++.....+..
T Consensus 295 l~~a~~~A~~ 304 (350)
T 1g8p_A 295 LRSARALAAL 304 (350)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9877666543
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.67 E-value=7.3e-16 Score=161.90 Aligned_cols=214 Identities=20% Similarity=0.278 Sum_probs=136.6
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ ++|++.+++.+...+.. + .... .++.++||+||||||||++|+++|+.++
T Consensus 43 ~~~-ivG~~~~~~~l~~l~~~----~-~~~~---------------------~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQG-MVGQLAARRAAGVVLEM----I-REGK---------------------IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETT-EESCHHHHHHHHHHHHH----H-HTTC---------------------CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhh-ccChHHHHHHHHHHHHH----H-HcCC---------------------CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344 79999999987665531 1 1111 1126899999999999999999999996
Q ss_pred C--ceeecchhhhhhcCCcccc------------------------------------------------hHHHHHHHHH
Q 007362 351 V--PFVIADATTLTQAGYVGED------------------------------------------------VESILYKLLA 380 (606)
Q Consensus 351 ~--~fi~i~~s~l~~sg~vG~~------------------------------------------------~~~~l~~lf~ 380 (606)
. +|+.+++..+... +.+.. ....++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 174 (368)
T 3uk6_A 96 PDTPFTAIAGSEIFSL-EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQIN 174 (368)
T ss_dssp SSCCEEEEEGGGGSCS-SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHH
T ss_pred ccCCcccccchhhhhc-ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHH
Confidence 4 7777776553321 11110 0122333333
Q ss_pred hhhhhhhh-c----CCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecC-
Q 007362 381 QAEFNVEA-A----QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTK- 454 (606)
Q Consensus 381 ~a~~~l~~-a----~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~- 454 (606)
.+...... . .++||||||+|.+... .++.|++.++... ...+.+.+.
T Consensus 175 ~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~--------------~~~~L~~~le~~~-------------~~~~ii~t~~ 227 (368)
T 3uk6_A 175 AKVAEWREEGKAEIIPGVLFIDEVHMLDIE--------------SFSFLNRALESDM-------------APVLIMATNR 227 (368)
T ss_dssp HHHHHHHHHTC---CBCEEEEESGGGSBHH--------------HHHHHHHHTTCTT-------------CCEEEEEESC
T ss_pred HHHHHhhhhccccccCceEEEhhccccChH--------------HHHHHHHHhhCcC-------------CCeeeeeccc
Confidence 32221111 1 1579999999999877 9999999987411 112222222
Q ss_pred ceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCc
Q 007362 455 DILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTAL 534 (606)
Q Consensus 455 nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~L 534 (606)
.+.+|.+++.. ....+.+.|++||.. +.|+++
T Consensus 228 ~~~~i~~t~~~-----------------------------------------------~~~~l~~~l~sR~~~-i~~~~~ 259 (368)
T 3uk6_A 228 GITRIRGTSYQ-----------------------------------------------SPHGIPIDLLDRLLI-VSTTPY 259 (368)
T ss_dssp SEEECBTSSCE-----------------------------------------------EETTCCHHHHTTEEE-EEECCC
T ss_pred ceeeeeccCCC-----------------------------------------------CcccCCHHHHhhccE-EEecCC
Confidence 23333332211 012367889999965 799999
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHH
Q 007362 535 TEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 535 s~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
+.+++.+|+...+. .. .+.++++++++|++.++. .+.|.+.++++..+..+..
T Consensus 260 ~~~e~~~il~~~~~-----------~~--~~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 260 SEKDTKQILRIRCE-----------EE--DVEMSEDAYTVLTRIGLE--TSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp CHHHHHHHHHHHHH-----------HT--TCCBCHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH
Confidence 99999999875311 12 245999999999998643 3469999999988776643
No 44
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=2.3e-15 Score=155.10 Aligned_cols=201 Identities=21% Similarity=0.351 Sum_probs=139.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
++|++.+++.|..++.... .. . ....++||+||||||||++|+++|+.++.+|+
T Consensus 14 ~ig~~~~~~~l~~~l~~~~----~~-~---------------------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAK----AR-K---------------------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHH----HH-C---------------------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred hhCHHHHHHHHHHHHHHHH----cc-C---------------------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999988774221 00 0 11368999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.+++..+.. ...+...+... .+.+++|||||||.+... .++.|+..|+...+.
T Consensus 68 ~~~~~~~~~--------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~~ 120 (324)
T 1hqc_A 68 VTSGPAIEK--------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVMD 120 (324)
T ss_dssp EECTTTCCS--------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEEE
T ss_pred EEeccccCC--------hHHHHHHHHHh-----ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhhH
Confidence 888876531 22232333221 236789999999999877 899999999854433
Q ss_pred cC-CCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhh
Q 007362 435 VP-EKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (606)
Q Consensus 435 i~-~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~ 513 (606)
+- ..+ .....+.....++++|++++..
T Consensus 121 ~v~~~~----~~~~~~~~~~~~~~~i~~t~~~------------------------------------------------ 148 (324)
T 1hqc_A 121 IVIGQG----PAARTIRLELPRFTLIGATTRP------------------------------------------------ 148 (324)
T ss_dssp ECCSSS----SSCCCEEEECCCCEEEEEESCC------------------------------------------------
T ss_pred Hhcccc----ccccccccCCCCEEEEEeCCCc------------------------------------------------
Confidence 21 111 1112233444567777776632
Q ss_pred hccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHH
Q 007362 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (606)
Q Consensus 514 ~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~I 593 (606)
..+.+.|++||+.++.|.+++.+++..++... +... .+.+++++++.|+++. .. ..|.+.+++
T Consensus 149 -~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~-----------~~~~--~~~~~~~~~~~l~~~~-~G--~~r~l~~~l 211 (324)
T 1hqc_A 149 -GLITAPLLSRFGIVEHLEYYTPEELAQGVMRD-----------ARLL--GVRITEEAALEIGRRS-RG--TMRVAKRLF 211 (324)
T ss_dssp -SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHH-----------HHTT--TCCCCHHHHHHHHHHS-CS--CHHHHHHHH
T ss_pred -ccCCHHHHhcccEEEecCCCCHHHHHHHHHHH-----------HHhc--CCCCCHHHHHHHHHHc-cC--CHHHHHHHH
Confidence 12678899999889999999999988777642 1112 3458999999999883 33 358888877
Q ss_pred HHHH
Q 007362 594 ESIL 597 (606)
Q Consensus 594 e~~l 597 (606)
+.+.
T Consensus 212 ~~~~ 215 (324)
T 1hqc_A 212 RRVR 215 (324)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
No 45
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.65 E-value=1.6e-17 Score=167.48 Aligned_cols=219 Identities=26% Similarity=0.316 Sum_probs=133.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|+|++.+++.|.+.+.. +. ..... .. .....+.++||+||||||||++|+++|+.++.+|+
T Consensus 13 i~G~~~~~~~l~~~~~~-~~---~~~~~---------~~------~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDF-LK---YPERY---------AN------LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp SSSCTTTHHHHHHHHHH-HH---CHHHH---------HH------HSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred hCCcHHHHHHHHHHHHH-HH---ChHHH---------HH------CCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 89999999999887741 11 00000 00 00012367999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccc-ccCcchhHHHHHHHHHHhceee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI-SRDVSGEGVQQALLKMLEGTIV 433 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~-~~~~s~~~vq~~LL~~Leg~~~ 433 (606)
.+++.++.. .+.|.. ...++.+|..+.. ..++||||||+|.+...+..... +.+.....+++.|+..|++...
T Consensus 74 ~v~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 74 SMGGSSFIE-MFVGLG-ASRVRDLFETAKK----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp CCCSCTTTT-SCSSSC-SSSSSTTHHHHHH----SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred EechHHHHH-hhcchH-HHHHHHHHHHHHh----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 999988764 355554 2233445544432 25689999999999876432211 1111122356777777764110
Q ss_pred ecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhh
Q 007362 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (606)
Q Consensus 434 ~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~ 513 (606)
...++++|+++|..+
T Consensus 148 ------------------~~~~v~vi~ttn~~~----------------------------------------------- 162 (268)
T 2r62_A 148 ------------------ENAPVIVLAATNRPE----------------------------------------------- 162 (268)
T ss_dssp ------------------SCSCCEEEECBSCCT-----------------------------------------------
T ss_pred ------------------CCCCEEEEEecCCch-----------------------------------------------
Confidence 123466777766421
Q ss_pred hccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHH
Q 007362 514 AYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (606)
Q Consensus 514 ~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~ 591 (606)
.+.+.+++ ||+..+.|..++.++..+|+... + .+..+. ++..++.|++. ..++..|+|+.
T Consensus 163 --~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~-----------~--~~~~~~-~~~~~~~la~~--~~g~~g~dl~~ 224 (268)
T 2r62_A 163 --ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVH-----------I--KGVKLA-NDVNLQEVAKL--TAGLAGADLAN 224 (268)
T ss_dssp --TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHH-----------T--SSSCCC-SSCCTTTTTSS--SCSSCHHHHHH
T ss_pred --hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHH-----------H--hcCCCC-CccCHHHHHHH--cCCCCHHHHHH
Confidence 14556666 89888999999998888887642 1 111111 11124445554 23455588988
Q ss_pred HHHHHHHHHH
Q 007362 592 ILESILTEAM 601 (606)
Q Consensus 592 ~Ie~~l~~al 601 (606)
++++....++
T Consensus 225 l~~~a~~~a~ 234 (268)
T 2r62_A 225 IINEAALLAG 234 (268)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 46
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.65 E-value=3e-15 Score=152.38 Aligned_cols=221 Identities=24% Similarity=0.309 Sum_probs=136.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++++++.|...+.. |.. .. .+. +. .+. .+.+++|+||||||||+++++|+..++
T Consensus 39 ~~~-i~g~~~~~~~l~~l~~~-~~~---~~---------~l~---~~--~~~-~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 39 FKD-VAGAEEAKEELKEIVEF-LKN---PS---------RFH---EM--GAR-IPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGG-SSSCHHHHHHHHHHHHH-HHC---HH---------HHH---HT--TCC-CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHH-hCChHHHHHHHHHHHHH-HHC---HH---------HHH---Hc--CCC-CCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 444 89999999999887642 211 00 000 00 011 135699999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+++.+++.++... +.+.. ...+..+|+.+... .++++|+||+|.+...+...............+.++..|+|
T Consensus 99 ~~~i~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~~----~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg 172 (278)
T 1iy2_A 99 VPFITASGSDFVEM-FVGVG-AARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 172 (278)
T ss_dssp CCEEEEEHHHHHHS-TTTHH-HHHHHHHHHHHHTS----CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT
T ss_pred CCEEEecHHHHHHH-HhhHH-HHHHHHHHHHHHhc----CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 99999999887643 44443 34556667665422 46899999999887654321111111123466677777775
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
... .+.++++++++..
T Consensus 173 g~~-------------------~~~~i~~a~t~~p--------------------------------------------- 188 (278)
T 1iy2_A 173 FEK-------------------DTAIVVMAATNRP--------------------------------------------- 188 (278)
T ss_dssp CCT-------------------TCCEEEEEEESCT---------------------------------------------
T ss_pred CCC-------------------CCCEEEEEecCCc---------------------------------------------
Confidence 221 1223344433321
Q ss_pred hhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH-HHHHHHccCCCCCChH
Q 007362 511 DLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-LRVIAKKATAKNTGAR 587 (606)
Q Consensus 511 ~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a-l~~La~~a~~~~~GAR 587 (606)
..+.+.++. ||+..+.|..++.++..+|+... + .+. .+++++ +..|+.. + .++..|
T Consensus 189 ----~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~-----------~--~~~--~~~~~~~~~~la~~-~-~G~~~~ 247 (278)
T 1iy2_A 189 ----DILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-----------A--RGK--PLAEDVDLALLAKR-T-PGFVGA 247 (278)
T ss_dssp ----TSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH-----------H--TTS--CBCTTCCHHHHHHT-C-TTCCHH
T ss_pred ----hhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH-----------H--ccC--CCCcccCHHHHHHH-c-CCCCHH
Confidence 115566665 89999999999999998888632 1 111 233333 6667765 3 344458
Q ss_pred HHHHHHHHHHHHHHH
Q 007362 588 GLRAILESILTEAMY 602 (606)
Q Consensus 588 ~L~~~Ie~~l~~al~ 602 (606)
+|+.++++....+..
T Consensus 248 dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 248 DLENLLNEAALLAAR 262 (278)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988876654
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=2.3e-16 Score=164.08 Aligned_cols=225 Identities=22% Similarity=0.262 Sum_probs=143.3
Q ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHH
Q 007362 266 EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (606)
Q Consensus 266 ~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAral 345 (606)
.+...+.+.|+||+++++.+..++.. ..++||+||||||||++|+++
T Consensus 20 ~~~~~~~~~i~g~~~~~~~l~~~l~~---------------------------------~~~vll~G~pGtGKT~la~~l 66 (331)
T 2r44_A 20 EVIDEVGKVVVGQKYMINRLLIGICT---------------------------------GGHILLEGVPGLAKTLSVNTL 66 (331)
T ss_dssp HHHHHHTTTCCSCHHHHHHHHHHHHH---------------------------------TCCEEEESCCCHHHHHHHHHH
T ss_pred HHHHHhccceeCcHHHHHHHHHHHHc---------------------------------CCeEEEECCCCCcHHHHHHHH
Confidence 45666667799999999988777641 168999999999999999999
Q ss_pred HHHhCCceeecchhh-hhhcCCcccchHHHHHHHHHhhhhh--hhh--cCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 346 ARHVNVPFVIADATT-LTQAGYVGEDVESILYKLLAQAEFN--VEA--AQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 346 A~~l~~~fi~i~~s~-l~~sg~vG~~~~~~l~~lf~~a~~~--l~~--a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
|+.++.+++.+++.. .....+.|... +...... +.. -..+||||||+|++... +
T Consensus 67 a~~~~~~~~~i~~~~~~~~~~l~g~~~-------~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~--------------~ 125 (331)
T 2r44_A 67 AKTMDLDFHRIQFTPDLLPSDLIGTMI-------YNQHKGNFEVKKGPVFSNFILADEVNRSPAK--------------V 125 (331)
T ss_dssp HHHTTCCEEEEECCTTCCHHHHHEEEE-------EETTTTEEEEEECTTCSSEEEEETGGGSCHH--------------H
T ss_pred HHHhCCCeEEEecCCCCChhhcCCcee-------ecCCCCceEeccCcccccEEEEEccccCCHH--------------H
Confidence 999999998888742 11111111110 0000000 000 02379999999998877 9
Q ss_pred HHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhH
Q 007362 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (606)
Q Consensus 421 q~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~ 500 (606)
++.|++.|+...+.+.+. ..-...++++|+|+|..+.
T Consensus 126 ~~~Ll~~l~~~~~~~~g~----------~~~~~~~~~viat~np~~~--------------------------------- 162 (331)
T 2r44_A 126 QSALLECMQEKQVTIGDT----------TYPLDNPFLVLATQNPVEQ--------------------------------- 162 (331)
T ss_dssp HHHHHHHHHHSEEEETTE----------EEECCSSCEEEEEECTTCC---------------------------------
T ss_pred HHHHHHHHhcCceeeCCE----------EEECCCCEEEEEecCCCcc---------------------------------
Confidence 999999999655554211 1112234556666553210
Q ss_pred HHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHH-------------HHHHHHHHhcCCccccc
Q 007362 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNAL-------------GKQYKRLFSMNNVKLHF 567 (606)
Q Consensus 501 ~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L-------------~k~~~~~~~~~~i~l~i 567 (606)
.-.+.+.++|++||+..+.+..++.++..+|+....... ...+.+. ...+.+
T Consensus 163 -----------~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~v~~ 227 (331)
T 2r44_A 163 -----------EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNE----INKVTI 227 (331)
T ss_dssp -----------SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHH----HHTCBC
T ss_pred -----------cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHH----hccCCC
Confidence 001237889999998889999999999999987643210 1111111 124668
Q ss_pred CHHHHHHHHHccC-----------------CCCCChHHHHHHHHHHHHHHHH
Q 007362 568 TEKALRVIAKKAT-----------------AKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 568 ~e~al~~La~~a~-----------------~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
+++++++|++... ....+.|.+.+++...-..+..
T Consensus 228 ~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l 279 (331)
T 2r44_A 228 SESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF 279 (331)
T ss_dssp CHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH
Confidence 9999999886431 1134678888887765544443
No 48
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.63 E-value=1.8e-17 Score=193.16 Aligned_cols=222 Identities=22% Similarity=0.269 Sum_probs=148.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
.++|++++|+.|.+++...... ... ....-..++.++||+||||||||++|++||+.++.+|
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~---~~~---------------~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEH---PDK---------------FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSS---CTT---------------TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccchhhhhhHHHHHHhhhhc---hHH---------------HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3789999999998776311000 000 0011112357899999999999999999999999999
Q ss_pred eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee
Q 007362 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (606)
Q Consensus 354 i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~ 433 (606)
+.+++.++. ..|+|+. +..+..+|+.+... .++||||||||++...+.............+++.||..|++..
T Consensus 540 i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~- 612 (806)
T 1ypw_A 540 ISIKGPELL-TMWFGES-EANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 612 (806)
T ss_dssp CCCCCSSST-TCCTTTS-SHHHHHHHHHHHHH----CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----
T ss_pred EEEechHhh-hhhcCcc-HHHHHHHHHHHHhc----CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-
Confidence 999999987 4588888 66788888877654 6789999999999877643322222223568899999988621
Q ss_pred ecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhh
Q 007362 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (606)
Q Consensus 434 ~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~ 513 (606)
...+++||+|+|..+
T Consensus 613 ------------------~~~~v~vI~tTN~~~----------------------------------------------- 627 (806)
T 1ypw_A 613 ------------------TKKNVFIIGATNRPD----------------------------------------------- 627 (806)
T ss_dssp ---------------------CCBCCCCCBSCG-----------------------------------------------
T ss_pred ------------------ccCCeEEEEecCCcc-----------------------------------------------
Confidence 335677888877431
Q ss_pred hccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHH
Q 007362 514 AYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (606)
Q Consensus 514 ~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~ 591 (606)
.++|++++ ||+.+|.|+.++.++..+|++..+.... + ...+. ++.|++. ..++..+.|+.
T Consensus 628 --~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~-----~~~~~-------l~~la~~--t~g~sgadi~~ 689 (806)
T 1ypw_A 628 --IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP--V-----AKDVD-------LEFLAKM--TNGFSGADLTE 689 (806)
T ss_dssp --GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----------CCC-------CSCSCGG--GSSSCCHHHHH
T ss_pred --cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC--C-----CcccC-------HHHHHHh--ccccCHHHHHH
Confidence 26778887 9999999999999999999886522110 0 00111 2223332 23455567777
Q ss_pred HHHHHHHHHHHh
Q 007362 592 ILESILTEAMYE 603 (606)
Q Consensus 592 ~Ie~~l~~al~~ 603 (606)
++......++.+
T Consensus 690 l~~~a~~~a~~~ 701 (806)
T 1ypw_A 690 ICQRACKLAIRE 701 (806)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH
Confidence 777776666543
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.63 E-value=3.4e-15 Score=154.66 Aligned_cols=194 Identities=18% Similarity=0.222 Sum_probs=134.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ ++|++++++.|..++... ..+..+||+||||||||++|+++|+.+
T Consensus 24 ~~~~-ivg~~~~~~~l~~~l~~~------------------------------~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 24 TIDE-CILPAFDKETFKSITSKG------------------------------KIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp STTT-SCCCHHHHHHHHHHHHTT------------------------------CCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CHHH-HhCcHHHHHHHHHHHHcC------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3444 799999999998877410 012557888889999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhh-hhhhhhcCCCEEEEcccchhh-hhhhccccccCcchhHHHHHHHHH
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQA-EFNVEAAQQGMVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKM 427 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a-~~~l~~a~~~ILfIDEiD~l~-~~r~~~~~~~~~s~~~vq~~LL~~ 427 (606)
+.+++.+++++.. ...++..+... ........+.||||||+|.+. .. .++.|++.
T Consensus 73 ~~~~~~i~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~--------------~~~~L~~~ 129 (324)
T 3u61_B 73 NADMMFVNGSDCK---------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE--------------SQRHLRSF 129 (324)
T ss_dssp TEEEEEEETTTCC---------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH--------------HHHHHHHH
T ss_pred CCCEEEEcccccC---------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH--------------HHHHHHHH
Confidence 9999999986532 12222222221 111011256799999999997 65 89999999
Q ss_pred HhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhh
Q 007362 428 LEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (606)
Q Consensus 428 Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~ 507 (606)
|+.. ..++.||+++|..
T Consensus 130 le~~---------------------~~~~~iI~~~n~~------------------------------------------ 146 (324)
T 3u61_B 130 MEAY---------------------SSNCSIIITANNI------------------------------------------ 146 (324)
T ss_dssp HHHH---------------------GGGCEEEEEESSG------------------------------------------
T ss_pred HHhC---------------------CCCcEEEEEeCCc------------------------------------------
Confidence 9831 2345666666532
Q ss_pred cchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCH-HHHHHHHHccCCCCCCh
Q 007362 508 ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE-KALRVIAKKATAKNTGA 586 (606)
Q Consensus 508 ~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e-~al~~La~~a~~~~~GA 586 (606)
..+.+.+.+|+. ++.|.+++.+++.+|+...+..+.+. +...+ +.+++ +++++|++. +.. +.
T Consensus 147 -------~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~----~~~~~--~~~~~~~~~~~l~~~-~~g--d~ 209 (324)
T 3u61_B 147 -------DGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEI----CKHEG--IAIADMKVVAALVKK-NFP--DF 209 (324)
T ss_dssp -------GGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHH----HHHHT--CCBSCHHHHHHHHHH-TCS--CT
T ss_pred -------cccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHH----HHHcC--CCCCcHHHHHHHHHh-CCC--CH
Confidence 126788899994 79999999999988888655444333 32334 45777 999999987 333 35
Q ss_pred HHHHHHHHHHH
Q 007362 587 RGLRAILESIL 597 (606)
Q Consensus 587 R~L~~~Ie~~l 597 (606)
|.+.+.++...
T Consensus 210 R~a~~~L~~~~ 220 (324)
T 3u61_B 210 RKTIGELDSYS 220 (324)
T ss_dssp THHHHHHHHHG
T ss_pred HHHHHHHHHHh
Confidence 77777777654
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.62 E-value=1.4e-15 Score=154.09 Aligned_cols=175 Identities=25% Similarity=0.311 Sum_probs=113.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchH---HHHHHHHHhhhhhhhhcCCCEEEEcccch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVE---SILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~---~~l~~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
+.++||+||||||||++|+++|+.++.+|+.+++.+. +.|.... ..+..+|..+.. ..++||||||||.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~ 135 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAYK----SQLSCVVVDDIER 135 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHHT----SSEEEEEECCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHHh----cCCcEEEEEChhh
Confidence 3789999999999999999999999999999988753 3444321 334455554322 3578999999999
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCC
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~ig 481 (606)
+...+... ......+++.|+..+++.. -...++++|+|++..+ .
T Consensus 136 l~~~~~~~----~~~~~~~l~~L~~~~~~~~------------------~~~~~~~ii~ttn~~~---~----------- 179 (272)
T 1d2n_A 136 LLDYVPIG----PRFSNLVLQALLVLLKKAP------------------PQGRKLLIIGTTSRKD---V----------- 179 (272)
T ss_dssp HTTCBTTT----TBCCHHHHHHHHHHTTCCC------------------STTCEEEEEEEESCHH---H-----------
T ss_pred hhccCCCC----hhHHHHHHHHHHHHhcCcc------------------CCCCCEEEEEecCChh---h-----------
Confidence 85442211 1112346777777766311 0123456676666321 0
Q ss_pred cCcccccccccccchhHhHHHHHhhhcchhhhhccCcc-cccccCCeEEEcCCcCH-HHHHHHHhhhHHHHHHHHHHHHh
Q 007362 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIP-EFVGRFPILVSLTALTE-DQLVKVLTEPKNALGKQYKRLFS 559 (606)
Q Consensus 482 f~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~P-eLl~R~d~iI~f~~Ls~-eel~~Il~~~l~~L~k~~~~~~~ 559 (606)
+.+ .+.+||+..+.|++++. +++.+++...
T Consensus 180 -----------------------------------l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~------------- 211 (272)
T 1d2n_A 180 -----------------------------------LQEMEMLNAFSTTIHVPNIATGEQLLEALELL------------- 211 (272)
T ss_dssp -----------------------------------HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH-------------
T ss_pred -----------------------------------cchhhhhcccceEEcCCCccHHHHHHHHHHhc-------------
Confidence 112 45688999999999987 7766665431
Q ss_pred cCCcccccCHHHHHHHHHccCC--CCCChHHHHHHHHHH
Q 007362 560 MNNVKLHFTEKALRVIAKKATA--KNTGARGLRAILESI 596 (606)
Q Consensus 560 ~~~i~l~i~e~al~~La~~a~~--~~~GAR~L~~~Ie~~ 596 (606)
..+++++++.|++..-. ...++|.+.++++..
T Consensus 212 -----~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 212 -----GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp -----TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 13678888888876421 122578888888754
No 51
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=2.1e-16 Score=178.46 Aligned_cols=255 Identities=18% Similarity=0.178 Sum_probs=146.4
Q ss_pred hHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHH
Q 007362 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (606)
Q Consensus 264 ~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAr 343 (606)
...+...+...|+||+++|+.|..++. .... .. ..+ .-.....+|||+||||||||++|+
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~--------~g~~------~~---~~~---~~~r~~~~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALF--------GGVP------KV---LED---TRIRGDIHILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTT--------CCCC------EE---TTT---TEECCSCCEEEEESSCCTHHHHHH
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHh--------CCCc------cc---ccC---CCcCCCcceEEECCCchHHHHHHH
Confidence 344667778889999999998865552 0000 00 000 111223589999999999999999
Q ss_pred HHHHHhCCceeec----chhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhH
Q 007362 344 TLARHVNVPFVIA----DATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (606)
Q Consensus 344 alA~~l~~~fi~i----~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~ 419 (606)
++|+.+...++.. ++..+. +..........+....+.+..+.++||||||||++.++
T Consensus 346 ~la~~~~r~~~~~~~~~~~~~l~-----~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-------------- 406 (595)
T 3f9v_A 346 FISRVAPRAVYTTGKGSTAAGLT-----AAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-------------- 406 (595)
T ss_dssp SSSTTCSCEECCCTTCSTTTTSE-----EECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------
T ss_pred HHHHhCCCceecCCCcccccccc-----ceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------
Confidence 9999987655542 222222 21111000011111223345567899999999999887
Q ss_pred HHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHh
Q 007362 420 VQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAV 499 (606)
Q Consensus 420 vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~ 499 (606)
+|+.|+++||...+++...|... .+ ..++.+|+|+|.. .++++....+
T Consensus 407 ~q~~Ll~~le~~~i~i~~~g~~~-------~~-~~~~~vIaatNp~-------~G~~~~~~~~----------------- 454 (595)
T 3f9v_A 407 DRVAIHEAMEQQTVSIAKAGIVA-------KL-NARAAVIAAGNPK-------FGRYISERPV----------------- 454 (595)
T ss_dssp HHHHHHHHHHSSSEEEESSSSEE-------EE-CCCCEEEEEECCT-------TCCSCTTSCS-----------------
T ss_pred HhhhhHHHHhCCEEEEecCCcEE-------Ee-cCceEEEEEcCCc-------CCccCcccCc-----------------
Confidence 99999999997776655444221 12 2345666666642 1111110000
Q ss_pred HHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHH-------------HHHHHHHHHHhcCCcccc
Q 007362 500 TSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN-------------ALGKQYKRLFSMNNVKLH 566 (606)
Q Consensus 500 ~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~-------------~L~k~~~~~~~~~~i~l~ 566 (606)
.+ ...+.++|++|||.++.+.++..++...|+...+. +..++|....+. .+...
T Consensus 455 ----~~--------ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ 521 (595)
T 3f9v_A 455 ----SD--------NINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK-YVTPK 521 (595)
T ss_dssp ----CT--------TTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH-HHCCC
T ss_pred ----hh--------ccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH-hCCCC
Confidence 00 11388999999998777776665544444443221 111222221111 12235
Q ss_pred cCHHHHHHHHHccC------------CCCCChHHHHHHHHHHHHHHHH
Q 007362 567 FTEKALRVIAKKAT------------AKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 567 i~e~al~~La~~a~------------~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
+++++.++|.++.. ....++|.|.+++.-.-..|..
T Consensus 522 ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l 569 (595)
T 3f9v_A 522 ITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKM 569 (595)
T ss_dssp CCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHH
Confidence 78888888887632 2356789998888765555443
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.60 E-value=5.6e-15 Score=161.43 Aligned_cols=104 Identities=29% Similarity=0.378 Sum_probs=75.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC--
Q 007362 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN-- 350 (606)
Q Consensus 273 ~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~-- 350 (606)
+.|+||+++++.+...+.. + .... .++.++||+||||||||++|+++|+.++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~----~-~~~~---------------------~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVEL----I-KSKK---------------------MAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp TTEESCHHHHHHHHHHHHH----H-HTTC---------------------CTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhccCHHHHHHHHHHHHHH----H-HhCC---------------------CCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 3489999999999877631 1 1111 1237899999999999999999999998
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhh
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r 406 (606)
.+|+.++++++. ..|+|.. +. +..+|..+.. .....++||||||+|.+..++
T Consensus 91 ~~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r 142 (456)
T 2c9o_A 91 VPFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCE 142 (456)
T ss_dssp SCEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC-
T ss_pred ceEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhccccc
Confidence 899999999887 4577776 44 7777776621 112256777777777776543
No 53
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.58 E-value=3.2e-14 Score=157.34 Aligned_cols=228 Identities=15% Similarity=0.194 Sum_probs=138.1
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHH
Q 007362 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (606)
Q Consensus 265 ~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAra 344 (606)
+.+...+.+.|+|++++++.+..++.. ..++||+||||||||++|++
T Consensus 14 ~~l~~~l~~~ivGq~~~i~~l~~al~~---------------------------------~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 14 SRLSSSLEKGLYERSHAIRLCLLAALS---------------------------------GESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHH---------------------------------TCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc---------------------------------CCeeEeecCchHHHHHHHHH
Confidence 457778888899999999988776641 27899999999999999999
Q ss_pred HHHHhC--CceeecchhhhhhcCCcccchHHHH--HHHHHhh-hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhH
Q 007362 345 LARHVN--VPFVIADATTLTQAGYVGEDVESIL--YKLLAQA-EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (606)
Q Consensus 345 lA~~l~--~~fi~i~~s~l~~sg~vG~~~~~~l--~~lf~~a-~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~ 419 (606)
||+.++ .+|..+.+.......++|....... ...+... .+.+ +.++|||||||+++.++
T Consensus 61 La~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~-------------- 124 (500)
T 3nbx_X 61 LKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPA-------------- 124 (500)
T ss_dssp GGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGGGCCHH--------------
T ss_pred HHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHhhhcHH--------------
Confidence 999884 3444443321111111221100000 1112111 1111 13579999999998877
Q ss_pred HHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHh
Q 007362 420 VQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAV 499 (606)
Q Consensus 420 vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~ 499 (606)
+++.|+++|+.+.+.+.+. .......++|+++|... .
T Consensus 125 ~q~~LL~~lee~~v~i~G~-----------~~~~~~~~iI~ATN~lp-------------------e------------- 161 (500)
T 3nbx_X 125 ILNTLLTAINERQFRNGAH-----------VEKIPMRLLVAASNELP-------------------E------------- 161 (500)
T ss_dssp HHHHHHHHHHSSEEECSSS-----------EEECCCCEEEEEESSCC-------------------C-------------
T ss_pred HHHHHHHHHHHHhccCCCC-----------cCCcchhhhhhccccCC-------------------C-------------
Confidence 9999999999766654221 11222223455554210 0
Q ss_pred HHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCH-HHHHHHHhhhHH--------------HHHHHHHHHHhcCCcc
Q 007362 500 TSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE-DQLVKVLTEPKN--------------ALGKQYKRLFSMNNVK 564 (606)
Q Consensus 500 ~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~-eel~~Il~~~l~--------------~L~k~~~~~~~~~~i~ 564 (606)
...+.+++++||...+.++++++ ++...|+..... +-...+.... ..
T Consensus 162 --------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~----~~ 223 (500)
T 3nbx_X 162 --------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI----GE 223 (500)
T ss_dssp --------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH----TT
T ss_pred --------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC----Cc
Confidence 01145788999988899988886 667777765321 0111122211 24
Q ss_pred cccCHHHHHHHHHcc-------CCCCCChHHHHHHHHHHHHHHHH
Q 007362 565 LHFTEKALRVIAKKA-------TAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 565 l~i~e~al~~La~~a-------~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
+.+++++++++++.. .....+.|.+..++...-..|..
T Consensus 224 v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l 268 (500)
T 3nbx_X 224 ITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFF 268 (500)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhh
Confidence 568999999988764 12456788888887765555544
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.56 E-value=6.4e-14 Score=134.13 Aligned_cols=184 Identities=23% Similarity=0.322 Sum_probs=122.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l----- 349 (606)
++|++++++.|...+... ...+++|+||||||||++|+.+++.+
T Consensus 19 ~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 67 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVERK-------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGENW 67 (226)
T ss_dssp CCSCHHHHHHHHHHHHTT-------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGG
T ss_pred HcCcHHHHHHHHHHHhCC-------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhcccc
Confidence 799999999998777410 12469999999999999999999986
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhh--hhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHH
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF--NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~--~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~ 427 (606)
...++.+++.... + ...+...+..... ......+.||||||+|.+... .++.|+.+
T Consensus 68 ~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~ 125 (226)
T 2chg_A 68 RDNFIEMNASDER-----G---IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (226)
T ss_dssp GGGEEEEETTCTT-----C---HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred ccceEEecccccc-----C---hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------------HHHHHHHH
Confidence 3456666654322 1 1112122211110 011246789999999998776 78889999
Q ss_pred HhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhh
Q 007362 428 LEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (606)
Q Consensus 428 Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~ 507 (606)
++.. ..++++|++++..
T Consensus 126 l~~~---------------------~~~~~~i~~~~~~------------------------------------------ 142 (226)
T 2chg_A 126 MEMY---------------------SKSCRFILSCNYV------------------------------------------ 142 (226)
T ss_dssp HHHT---------------------TTTEEEEEEESCG------------------------------------------
T ss_pred HHhc---------------------CCCCeEEEEeCCh------------------------------------------
Confidence 8731 1234455554421
Q ss_pred cchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChH
Q 007362 508 ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGAR 587 (606)
Q Consensus 508 ~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR 587 (606)
..+.+.+.+|+. .+.|.+++.+++.+++...+. ..+ +.+++++++.|++.. .. ..|
T Consensus 143 -------~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-----------~~~--~~~~~~~~~~l~~~~-~g--~~r 198 (226)
T 2chg_A 143 -------SRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICE-----------KEG--VKITEDGLEALIYIS-GG--DFR 198 (226)
T ss_dssp -------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHH-----------HHT--CCBCHHHHHHHHHHH-TT--CHH
T ss_pred -------hhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHH-----------HcC--CCCCHHHHHHHHHHc-CC--CHH
Confidence 125677888886 899999999998888764311 112 348899999999763 33 358
Q ss_pred HHHHHHHHHHH
Q 007362 588 GLRAILESILT 598 (606)
Q Consensus 588 ~L~~~Ie~~l~ 598 (606)
.+.++++..+.
T Consensus 199 ~l~~~l~~~~~ 209 (226)
T 2chg_A 199 KAINALQGAAA 209 (226)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888877654
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.54 E-value=5.3e-15 Score=136.56 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=72.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CC
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NV 351 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~ 351 (606)
++|++.+++.+.+.+... +....+|||+||||||||++|+++++.. +.
T Consensus 3 iiG~s~~~~~~~~~~~~~-----------------------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQL-----------------------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp -CCSSHHHHHHHHHHHHH-----------------------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred ceeCCHHHHHHHHHHHHH-----------------------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 688888888887766411 1223789999999999999999999987 67
Q ss_pred ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 352 ~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+|+ ++|..+.+. .. ...++. .+.+++|||||||.+... +|..|+.+|+
T Consensus 54 ~~v-~~~~~~~~~----~~----~~~~~~-------~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~ 101 (145)
T 3n70_A 54 EFV-YRELTPDNA----PQ----LNDFIA-------LAQGGTLVLSHPEHLTRE--------------QQYHLVQLQS 101 (145)
T ss_dssp CCE-EEECCTTTS----SC----HHHHHH-------HHTTSCEEEECGGGSCHH--------------HHHHHHHHHH
T ss_pred CEE-EECCCCCcc----hh----hhcHHH-------HcCCcEEEEcChHHCCHH--------------HHHHHHHHHh
Confidence 899 999876532 11 112222 236689999999999887 9999999985
No 56
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.53 E-value=5.5e-14 Score=147.06 Aligned_cols=219 Identities=12% Similarity=0.132 Sum_probs=135.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh----
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---- 349 (606)
.+.|.|+-.+.|...|..... . ..+.+++|+||||||||++++.+++.+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--------~-------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--------S-------------------SQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------T-------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHhc--------C-------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 367777777877777642211 0 123789999999999999999999988
Q ss_pred ------CCceeecchhhhhhc---------CCccc-----chHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcc
Q 007362 350 ------NVPFVIADATTLTQA---------GYVGE-----DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (606)
Q Consensus 350 ------~~~fi~i~~s~l~~s---------g~vG~-----~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~ 409 (606)
...++.++|..+... .+.|+ .....+..+|..... ......||||||+|.+. .
T Consensus 74 ~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~---- 146 (318)
T 3te6_A 74 ARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S---- 146 (318)
T ss_dssp TTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C----
T ss_pred hhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c----
Confidence 346788887654321 01111 113445555554311 12346799999999986 2
Q ss_pred ccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccc
Q 007362 410 NISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRAN 489 (606)
Q Consensus 410 ~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~ 489 (606)
+.++..|+++.+ .+..++++|+.+|..++.
T Consensus 147 --------q~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~--------------------- 176 (318)
T 3te6_A 147 --------EKILQYFEKWIS---------------------SKNSKLSIICVGGHNVTI--------------------- 176 (318)
T ss_dssp --------THHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCC---------------------
T ss_pred --------chHHHHHHhccc---------------------ccCCcEEEEEEecCcccc---------------------
Confidence 125555555432 133567777777643211
Q ss_pred cccccchhHhHHHHHhhhcchhhhhccCcccccccCC-eEEEcCCcCHHHHHHHHhhhHHHHHHHH--------------
Q 007362 490 MRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP-ILVSLTALTEDQLVKVLTEPKNALGKQY-------------- 554 (606)
Q Consensus 490 ~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d-~iI~f~~Ls~eel~~Il~~~l~~L~k~~-------------- 554 (606)
...+.+.+.+|+. .+|.|.+|+.+|+.+|+...+..+.+.+
T Consensus 177 ------------------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~ 232 (318)
T 3te6_A 177 ------------------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYN 232 (318)
T ss_dssp ------------------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECC
T ss_pred ------------------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 1113456678887 4899999999999999987544332100
Q ss_pred --HHH----H--hcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHH
Q 007362 555 --KRL----F--SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (606)
Q Consensus 555 --~~~----~--~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~a 600 (606)
... . ...++++.++++++++++++....+-.+|..-.+++..+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 233 NIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp CC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 000 0 001124568999999999975555566888777777766654
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.2e-13 Score=141.61 Aligned_cols=185 Identities=24% Similarity=0.328 Sum_probs=122.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCC---
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~--- 351 (606)
++|++++++.|...+... ...++||+||||||||++|+++++.+..
T Consensus 27 ~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~ 75 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTG-------------------------------SMPHLLFAGPPGVGKTTAALALARELFGENW 75 (327)
T ss_dssp CCSCHHHHHHHHHHHHHT-------------------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGH
T ss_pred hhCCHHHHHHHHHHHHcC-------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 899999999998777411 0147999999999999999999998732
Q ss_pred --ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 352 --PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 352 --~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
.++.+++++..... .....+....... .+..+.+.||||||+|.+... .++.|++.|+
T Consensus 76 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~le 135 (327)
T 1iqp_A 76 RHNFLELNASDERGIN----VIREKVKEFARTK--PIGGASFKIIFLDEADALTQD--------------AQQALRRTME 135 (327)
T ss_dssp HHHEEEEETTCHHHHH----TTHHHHHHHHHSC--CGGGCSCEEEEEETGGGSCHH--------------HHHHHHHHHH
T ss_pred cCceEEeeccccCchH----HHHHHHHHHHhhC--CcCCCCCeEEEEeCCCcCCHH--------------HHHHHHHHHH
Confidence 35666655432110 0111222221111 122246789999999999877 8999999998
Q ss_pred ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcc
Q 007362 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (606)
Q Consensus 430 g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~ 509 (606)
.. ..+++||++++..
T Consensus 136 ~~---------------------~~~~~~i~~~~~~-------------------------------------------- 150 (327)
T 1iqp_A 136 MF---------------------SSNVRFILSCNYS-------------------------------------------- 150 (327)
T ss_dssp HT---------------------TTTEEEEEEESCG--------------------------------------------
T ss_pred hc---------------------CCCCeEEEEeCCc--------------------------------------------
Confidence 31 1234455554421
Q ss_pred hhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHH
Q 007362 510 SDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGL 589 (606)
Q Consensus 510 ~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L 589 (606)
..+.+.+.+|+. ++.|.+++.+++.+++... +...+ +.++++++++|++.. . -+.|.+
T Consensus 151 -----~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~-----------~~~~~--~~~~~~~~~~l~~~~-~--g~~r~~ 208 (327)
T 1iqp_A 151 -----SKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYI-----------AENEG--LELTEEGLQAILYIA-E--GDMRRA 208 (327)
T ss_dssp -----GGSCHHHHHTEE-EEECCCCCHHHHHHHHHHH-----------HHTTT--CEECHHHHHHHHHHH-T--TCHHHH
T ss_pred -----cccCHHHHhhCc-EEEecCCCHHHHHHHHHHH-----------HHhcC--CCCCHHHHHHHHHHC-C--CCHHHH
Confidence 114567778875 7899999999988877642 11223 458999999999874 2 345777
Q ss_pred HHHHHHHH
Q 007362 590 RAILESIL 597 (606)
Q Consensus 590 ~~~Ie~~l 597 (606)
.++++...
T Consensus 209 ~~~l~~~~ 216 (327)
T 1iqp_A 209 INILQAAA 216 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.51 E-value=3.2e-13 Score=130.42 Aligned_cols=192 Identities=22% Similarity=0.282 Sum_probs=121.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
++|++++++.|..++... ..+..++|+||+|||||++++.+++.+.....
T Consensus 25 ~~g~~~~~~~l~~~l~~~------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~ 74 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLG------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 74 (250)
T ss_dssp CCSCHHHHHHHHHHHHHT------------------------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTC
T ss_pred HhCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 799999999998877410 01246999999999999999999998743221
Q ss_pred ec--c------hhhhhhc---CC-----cccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 355 IA--D------ATTLTQA---GY-----VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 355 ~i--~------~s~l~~s---g~-----vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
.. . +..+... .+ ........+..++...........+.+|||||+|.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~------------- 141 (250)
T 1njg_A 75 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH------------- 141 (250)
T ss_dssp SCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------
T ss_pred CCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-------------
Confidence 10 0 0000000 00 001112334445444322212235689999999998766
Q ss_pred HHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhH
Q 007362 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~ 498 (606)
.++.|++.|+.. ..++++|++++..
T Consensus 142 -~~~~l~~~l~~~---------------------~~~~~~i~~t~~~--------------------------------- 166 (250)
T 1njg_A 142 -SFNALLKTLEEP---------------------PEHVKFLLATTDP--------------------------------- 166 (250)
T ss_dssp -HHHHHHHHHHSC---------------------CTTEEEEEEESCG---------------------------------
T ss_pred -HHHHHHHHHhcC---------------------CCceEEEEEeCCh---------------------------------
Confidence 889999998731 2344555555421
Q ss_pred hHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 499 ~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
..+.+.+++|+ ..+.|.+++.+++.+++...+. ..+ +.+++++++.|++.
T Consensus 167 ----------------~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~-----------~~~--~~~~~~~~~~l~~~ 216 (250)
T 1njg_A 167 ----------------QKLPVTILSRC-LQFHLKALDVEQIRHQLEHILN-----------EEH--IAHEPRALQLLARA 216 (250)
T ss_dssp ----------------GGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH-----------HTT--CCBCHHHHHHHHHH
T ss_pred ----------------HhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHH-----------hcC--CCCCHHHHHHHHHH
Confidence 01445566775 6899999999999888765311 122 45889999999988
Q ss_pred cCCCCCChHHHHHHHHHHH
Q 007362 579 ATAKNTGARGLRAILESIL 597 (606)
Q Consensus 579 a~~~~~GAR~L~~~Ie~~l 597 (606)
+ .+ ..|.+.+++++.+
T Consensus 217 ~-~G--~~~~~~~~~~~~~ 232 (250)
T 1njg_A 217 A-EG--SLRDALSLTDQAI 232 (250)
T ss_dssp H-TT--CHHHHHHHHHHHH
T ss_pred c-CC--CHHHHHHHHHHHH
Confidence 5 22 4688888887765
No 59
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.50 E-value=2.2e-13 Score=141.33 Aligned_cols=172 Identities=16% Similarity=0.263 Sum_probs=111.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
.+++|+||||||||++|+++++.+ +.+++.+++.++... +.+....... ..|.. ....+.||||||+|.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~~-----~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA-MVEHLKKGTI-NEFRN-----MYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHHHHHHTCH-HHHHH-----HHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHHHcCcH-HHHHH-----HhcCCCEEEEcCcccc
Confidence 689999999999999999999998 889999998876421 1111000000 01110 1124789999999998
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf 482 (606)
..+. ..++.|+.+++... +.... +|++++...
T Consensus 111 ~~~~------------~~~~~l~~~l~~~~-------------------~~~~~-iii~~~~~~---------------- 142 (324)
T 1l8q_A 111 SGKE------------RTQIEFFHIFNTLY-------------------LLEKQ-IILASDRHP---------------- 142 (324)
T ss_dssp TTCH------------HHHHHHHHHHHHHH-------------------HTTCE-EEEEESSCG----------------
T ss_pred cCCh------------HHHHHHHHHHHHHH-------------------HCCCe-EEEEecCCh----------------
Confidence 7531 16677777765211 11112 233332110
Q ss_pred CcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
.+ + ..+.+.|++||+ .++.|++ +.+++.+|+...+. .
T Consensus 143 ---------------------------~~-l-~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~-----------~ 181 (324)
T 1l8q_A 143 ---------------------------QK-L-DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK-----------E 181 (324)
T ss_dssp ---------------------------GG-C-TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH-----------H
T ss_pred ---------------------------HH-H-HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH-----------h
Confidence 00 0 126778888986 6899999 99999998875321 1
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
. .+.++++++++|+++. .++|.|..+++.++..
T Consensus 182 ~--~~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 182 F--NLELRKEVIDYLLENT----KNVREIEGKIKLIKLK 214 (324)
T ss_dssp T--TCCCCHHHHHHHHHHC----SSHHHHHHHHHHHHHH
T ss_pred c--CCCCCHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 2 3468999999999985 4569999998887754
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.48 E-value=1e-13 Score=141.70 Aligned_cols=188 Identities=24% Similarity=0.325 Sum_probs=125.0
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l- 349 (606)
+++ ++|++++++.|...+.. + ...++||+||||||||++|+++++.+
T Consensus 16 ~~~-~~g~~~~~~~l~~~l~~------------~-------------------~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 16 LDE-VVGQDEVIQRLKGYVER------------K-------------------NIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp GGG-SCSCHHHHHHHHTTTTT------------T-------------------CCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHH-HhCCHHHHHHHHHHHhC------------C-------------------CCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 444 79999999988766631 0 11469999999999999999999987
Q ss_pred ----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHH
Q 007362 350 ----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (606)
Q Consensus 350 ----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL 425 (606)
..+++.+++.+..... .....+........ +....+.||||||+|.+... .++.|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~ 123 (319)
T 2chq_A 64 GENWRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALR 123 (319)
T ss_dssp TTCHHHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTG
T ss_pred CCcccCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHH
Confidence 2356777776543111 11222222221111 11235789999999999876 889999
Q ss_pred HHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHh
Q 007362 426 KMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLE 505 (606)
Q Consensus 426 ~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~ 505 (606)
+.|+. ...+++||++++..
T Consensus 124 ~~le~---------------------~~~~~~~i~~~~~~---------------------------------------- 142 (319)
T 2chq_A 124 RTMEM---------------------YSKSCRFILSCNYV---------------------------------------- 142 (319)
T ss_dssp GGTSS---------------------SSSSEEEEEEESCG----------------------------------------
T ss_pred HHHHh---------------------cCCCCeEEEEeCCh----------------------------------------
Confidence 99873 12344556555421
Q ss_pred hhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCC
Q 007362 506 SVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTG 585 (606)
Q Consensus 506 ~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~G 585 (606)
..+.+.+.+|+. ++.|.+++.+++.+++... +...+ +.+++++++.|+.. +.+ .
T Consensus 143 ---------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~-----------~~~~~--~~i~~~~l~~l~~~-~~G--~ 196 (319)
T 2chq_A 143 ---------SRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEI-----------CEKEG--VKITEDGLEALIYI-SGG--D 196 (319)
T ss_dssp ---------GGSCHHHHTTCE-EEECCCCCHHHHHHHHHHH-----------HHTTC--CCBCHHHHHHHHHT-TTT--C
T ss_pred ---------hhcchHHHhhCe-EEEecCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHH-cCC--C
Confidence 125677888885 8999999999988877642 12223 45899999999965 333 3
Q ss_pred hHHHHHHHHHHH
Q 007362 586 ARGLRAILESIL 597 (606)
Q Consensus 586 AR~L~~~Ie~~l 597 (606)
.|.+.+.++...
T Consensus 197 ~r~~~~~l~~~~ 208 (319)
T 2chq_A 197 FRKAINALQGAA 208 (319)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 577777777654
No 61
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.1e-13 Score=143.96 Aligned_cols=184 Identities=21% Similarity=0.241 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~---- 350 (606)
++|++++++.|..++.. + ...++||+||||||||++|+++|+.++
T Consensus 39 i~g~~~~~~~l~~~l~~------------~-------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~ 87 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKS------------A-------------------NLPHMLFYGPPGTGKTSTILALTKELYGPDL 87 (353)
T ss_dssp CCSCCTTHHHHHHHTTC------------T-------------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHhc------------C-------------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 89999999988777631 0 015699999999999999999999864
Q ss_pred --CceeecchhhhhhcCCcccchHHHHHHHHHhhhh------------hhhhcCCCEEEEcccchhhhhhhccccccCcc
Q 007362 351 --VPFVIADATTLTQAGYVGEDVESILYKLLAQAEF------------NVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (606)
Q Consensus 351 --~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~------------~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s 416 (606)
..++.+++++.. + ...++..+..... ........||||||+|.+...
T Consensus 88 ~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~----------- 148 (353)
T 1sxj_D 88 MKSRILELNASDER-----G---ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD----------- 148 (353)
T ss_dssp HTTSEEEECSSSCC-----C---HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------
T ss_pred cccceEEEcccccc-----c---hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------
Confidence 346666665432 1 1111111111100 001124569999999999877
Q ss_pred hhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccch
Q 007362 417 GEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTD 496 (606)
Q Consensus 417 ~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~ 496 (606)
.++.|++.|+.. ..+..||++++..
T Consensus 149 ---~~~~Ll~~le~~---------------------~~~~~~il~~~~~------------------------------- 173 (353)
T 1sxj_D 149 ---AQSALRRTMETY---------------------SGVTRFCLICNYV------------------------------- 173 (353)
T ss_dssp ---HHHHHHHHHHHT---------------------TTTEEEEEEESCG-------------------------------
T ss_pred ---HHHHHHHHHHhc---------------------CCCceEEEEeCch-------------------------------
Confidence 899999999841 1223344444321
Q ss_pred hHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Q 007362 497 AAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIA 576 (606)
Q Consensus 497 ~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La 576 (606)
..+.+.+.+|+. .+.|.+++.+++..++... +...+ +.++++++++|+
T Consensus 174 ------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~-----------~~~~~--~~i~~~~l~~l~ 221 (353)
T 1sxj_D 174 ------------------TRIIDPLASQCS-KFRFKALDASNAIDRLRFI-----------SEQEN--VKCDDGVLERIL 221 (353)
T ss_dssp ------------------GGSCHHHHHHSE-EEECCCCCHHHHHHHHHHH-----------HHTTT--CCCCHHHHHHHH
T ss_pred ------------------hhCcchhhccCc-eEEeCCCCHHHHHHHHHHH-----------HHHhC--CCCCHHHHHHHH
Confidence 115677888885 8899999999988887642 11223 458999999999
Q ss_pred HccCCCCCChHHHHHHHHHHHH
Q 007362 577 KKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 577 ~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
+... -..|.+.++++....
T Consensus 222 ~~~~---G~~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 222 DISA---GDLRRGITLLQSASK 240 (353)
T ss_dssp HHTS---SCHHHHHHHHHHTHH
T ss_pred HHcC---CCHHHHHHHHHHHHH
Confidence 9854 236777777765543
No 62
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.47 E-value=2.5e-13 Score=158.38 Aligned_cols=219 Identities=24% Similarity=0.347 Sum_probs=143.6
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++++++.|.+.+...+. +......++ ..++.++||+||||||||++|++||+.++
T Consensus 203 ~~d-i~G~~~~~~~l~e~i~~~l~---~~~~~~~l~---------------i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 203 YDD-VGGCRKQLAQIKEMVELPLR---HPALFKAIG---------------VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGG-CCSCSGGGGHHHHHHHHHHH---CGGGGTSSC---------------CCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHH-hCChHHHHHHHHHHHHHHhh---CHHHHHhcC---------------CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 444 89999999999998863322 122111111 12347899999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+|+.+++.++.. .+.|+. +..+..+|+.+... .++||||||+|.+...+... .......+++.|+.+|++
T Consensus 264 ~~~i~v~~~~l~~-~~~g~~-~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g 334 (806)
T 1ypw_A 264 AFFFLINGPEIMS-KLAGES-ESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp CEEEEEEHHHHSS-SSTTHH-HHHHHHHHHHHHHH----CSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHS
T ss_pred CcEEEEEchHhhh-hhhhhH-HHHHHHHHHHHHhc----CCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhh
Confidence 9999999998873 466665 56777888776543 67899999999988764321 122234688999999986
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
... ..++++|++++..+
T Consensus 335 ~~~-------------------~~~v~vI~atn~~~-------------------------------------------- 351 (806)
T 1ypw_A 335 LKQ-------------------RAHVIVMAATNRPN-------------------------------------------- 351 (806)
T ss_dssp SCT-------------------TSCCEEEEECSCTT--------------------------------------------
T ss_pred hcc-------------------cccEEEecccCCch--------------------------------------------
Confidence 221 13456666665321
Q ss_pred hhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHH
Q 007362 511 DLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARG 588 (606)
Q Consensus 511 ~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~ 588 (606)
.+.+.+.. ||+..+.+..++.++..+|+... ...+.+. ++..+..++.. ...+..+.
T Consensus 352 -----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~-------------~~~~~l~-~~~~l~~la~~--t~g~~g~d 410 (806)
T 1ypw_A 352 -----SIDPALRRFGRFDREVDIGIPDATGRLEILQIH-------------TKNMKLA-DDVDLEQVANE--THGHVGAD 410 (806)
T ss_dssp -----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHT-------------TTTSCCC-TTCCTHHHHHS--CSSCCHHH
T ss_pred -----hcCHHHhcccccccccccCCCCHHHHHHHHHHH-------------HhcCCCc-ccchhHHHHHh--hcCcchHH
Confidence 14455554 89999999999999988887642 1111111 11124445544 33444566
Q ss_pred HHHHHHHHHHHHH
Q 007362 589 LRAILESILTEAM 601 (606)
Q Consensus 589 L~~~Ie~~l~~al 601 (606)
+..++......++
T Consensus 411 l~~l~~ea~~~a~ 423 (806)
T 1ypw_A 411 LAALCSEAALQAI 423 (806)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555444
No 63
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=8.7e-13 Score=138.64 Aligned_cols=202 Identities=19% Similarity=0.233 Sum_probs=127.2
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---
Q 007362 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (606)
Q Consensus 273 ~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l--- 349 (606)
+.++|+++.++.|...+.... .. ..+.+++|+||||||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~----~~-----------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV----KN-----------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH----TT-----------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH----cC-----------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 458999999999988774211 00 113689999999999999999999988
Q ss_pred --------CCceeecchhhhh-hc----------------CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhh
Q 007362 350 --------NVPFVIADATTLT-QA----------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 350 --------~~~fi~i~~s~l~-~s----------------g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~ 404 (606)
+.+++.+++.... .. ...+......+..++.... ..+.||||||+|.+..
T Consensus 73 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~vlilDEi~~l~~ 147 (384)
T 2qby_B 73 KKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-----NIRAIIYLDEVDTLVK 147 (384)
T ss_dssp HHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-----SSCEEEEEETTHHHHH
T ss_pred hhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-----cCCCEEEEECHHHhcc
Confidence 8899999887543 10 0112221222322222211 1223999999999865
Q ss_pred hhhccccccCcchhHHHHH-HHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcC
Q 007362 405 KAESLNISRDVSGEGVQQA-LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFG 483 (606)
Q Consensus 405 ~r~~~~~~~~~s~~~vq~~-LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~ 483 (606)
.. .++. |..+++- . .++++|++++..+
T Consensus 148 ~~-------------~~~~~l~~l~~~---------------------~-~~~~iI~~t~~~~----------------- 175 (384)
T 2qby_B 148 RR-------------GGDIVLYQLLRS---------------------D-ANISVIMISNDIN----------------- 175 (384)
T ss_dssp ST-------------TSHHHHHHHHTS---------------------S-SCEEEEEECSSTT-----------------
T ss_pred CC-------------CCceeHHHHhcC---------------------C-cceEEEEEECCCc-----------------
Confidence 41 1233 3333321 0 4566777766321
Q ss_pred cccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCc
Q 007362 484 APVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNV 563 (606)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i 563 (606)
+...+.+.+.+||...+.|++++.+++.+|+...+. .. -.
T Consensus 176 -----------------------------~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~-------~~----~~ 215 (384)
T 2qby_B 176 -----------------------------VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE-------YG----LI 215 (384)
T ss_dssp -----------------------------TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH-------HT----SC
T ss_pred -----------------------------hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH-------hh----cc
Confidence 011256778889877999999999999999875421 10 11
Q ss_pred ccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 564 KLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 564 ~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
...+++++++.|++.+....-.+|.+.++++..+.
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 24588889999888764322336777666666543
No 64
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.45 E-value=1.8e-13 Score=127.99 Aligned_cols=160 Identities=19% Similarity=0.263 Sum_probs=102.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l----- 349 (606)
++|+++.++.+...+.. ..+.+++|+||||||||++|+++++.+
T Consensus 24 ~~g~~~~~~~l~~~l~~-------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~ 72 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 72 (195)
T ss_dssp CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCS
T ss_pred cccchHHHHHHHHHHhc-------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999988888776631 013689999999999999999999987
Q ss_pred -----CCceeecchhhhhhc-CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHH
Q 007362 350 -----NVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (606)
Q Consensus 350 -----~~~fi~i~~s~l~~s-g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~ 423 (606)
+.+++.+++..+... .+.+.. ...+..++..... ...+.||||||+|.+...... ... ..+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~-~~~-----~~~~~~ 142 (195)
T 1jbk_A 73 PEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKA-DGA-----MDAGNM 142 (195)
T ss_dssp CGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHHH---STTTEEEEEETGGGGTT-------C-----CCCHHH
T ss_pred chhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHhh---cCCCeEEEEeCHHHHhccCcc-cch-----HHHHHH
Confidence 678888888776521 222222 3344444443221 124569999999998754211 111 126777
Q ss_pred HHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHH
Q 007362 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (606)
Q Consensus 424 LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~l 503 (606)
|..+++. .++.+|++++..++...
T Consensus 143 l~~~~~~-----------------------~~~~~i~~~~~~~~~~~--------------------------------- 166 (195)
T 1jbk_A 143 LKPALAR-----------------------GELHCVGATTLDEYRQY--------------------------------- 166 (195)
T ss_dssp HHHHHHT-----------------------TSCCEEEEECHHHHHHH---------------------------------
T ss_pred HHHhhcc-----------------------CCeEEEEeCCHHHHHHH---------------------------------
Confidence 7777652 23455665553211100
Q ss_pred HhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHH
Q 007362 504 LESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVL 543 (606)
Q Consensus 504 l~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il 543 (606)
..+.+.+++||+ .+.|.+++.+++.+|+
T Consensus 167 -----------~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 -----------IEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -----------TTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred -----------HhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 125678889997 6899999999887765
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=7.9e-13 Score=138.41 Aligned_cols=189 Identities=22% Similarity=0.282 Sum_probs=120.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
++|++++++.|..++... . .+..+||+||+|||||++|+++|+.++....
T Consensus 18 ~vg~~~~~~~L~~~l~~~----------~--------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~ 67 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLG----------R--------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 (373)
T ss_dssp SCSCHHHHHHHHHHHHHT----------C--------------------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTC
T ss_pred ccCcHHHHHHHHHHHHhC----------C--------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 899999999998877411 0 1245899999999999999999998864211
Q ss_pred --ecc------hhhhh-----------hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCc
Q 007362 355 --IAD------ATTLT-----------QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (606)
Q Consensus 355 --~i~------~s~l~-----------~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~ 415 (606)
... |..+. .....+. ..++.+++..........+.||||||+|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~---------- 134 (373)
T 1jr3_A 68 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKV---EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH---------- 134 (373)
T ss_dssp SCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCS---SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH----------
T ss_pred CCCCCCcccHHHHHHhccCCCceEEecccccCCH---HHHHHHHHHHhhccccCCeEEEEEECcchhcHH----------
Confidence 000 00000 0000111 123344443322111235679999999999776
Q ss_pred chhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccc
Q 007362 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVT 495 (606)
Q Consensus 416 s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~ 495 (606)
.++.|++.++. ...+++||++++..
T Consensus 135 ----~~~~Ll~~le~---------------------~~~~~~~Il~~~~~------------------------------ 159 (373)
T 1jr3_A 135 ----SFNALLKTLEE---------------------PPEHVKFLLATTDP------------------------------ 159 (373)
T ss_dssp ----HHHHHHHHHHS---------------------CCSSEEEEEEESCG------------------------------
T ss_pred ----HHHHHHHHHhc---------------------CCCceEEEEEeCCh------------------------------
Confidence 89999999984 12345555554421
Q ss_pred hhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHH
Q 007362 496 DAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVI 575 (606)
Q Consensus 496 ~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~L 575 (606)
..+.+.+.+|+ ..+.|.+++.+++.+++...+. ..+ +.+++++++.|
T Consensus 160 -------------------~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~-----------~~~--~~~~~~a~~~l 206 (373)
T 1jr3_A 160 -------------------QKLPVTILSRC-LQFHLKALDVEQIRHQLEHILN-----------EEH--IAHEPRALQLL 206 (373)
T ss_dssp -------------------GGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH-----------HHT--CCBCHHHHHHH
T ss_pred -------------------HhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHH-----------HcC--CCCCHHHHHHH
Confidence 01456677777 6899999999998888875311 113 45889999999
Q ss_pred HHccCCCCCChHHHHHHHHHHH
Q 007362 576 AKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 576 a~~a~~~~~GAR~L~~~Ie~~l 597 (606)
++.+ +-..|.+.+++++.+
T Consensus 207 ~~~~---~G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 207 ARAA---EGSLRDALSLTDQAI 225 (373)
T ss_dssp HHHS---SSCHHHHHHHHHHHH
T ss_pred HHHC---CCCHHHHHHHHHHHH
Confidence 9874 234577777777654
No 66
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.45 E-value=2.2e-14 Score=132.18 Aligned_cols=96 Identities=19% Similarity=0.331 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
++|++.+++.+.+.+... .....+|||+||||||||++|+++++... +|+
T Consensus 6 ~iG~s~~~~~l~~~~~~~-----------------------------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAA-----------------------------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp --CCCHHHHHHHHHHHHH-----------------------------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred ceeCCHHHHHHHHHHHHH-----------------------------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 789999999888877411 01237899999999999999999999887 999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+++..+... ....++. .+.+++|||||+|.+... .|..|+++|+.
T Consensus 56 ~~~~~~~~~~---------~~~~~~~-------~a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~ 101 (143)
T 3co5_A 56 SPARVEYLID---------MPMELLQ-------KAEGGVLYVGDIAQYSRN--------------IQTGITFIIGK 101 (143)
T ss_dssp CCSSTTHHHH---------CHHHHHH-------HTTTSEEEEEECTTCCHH--------------HHHHHHHHHHH
T ss_pred EechhhCChH---------hhhhHHH-------hCCCCeEEEeChHHCCHH--------------HHHHHHHHHHh
Confidence 9999876532 1223333 235689999999999887 89999999984
No 67
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.44 E-value=2.6e-13 Score=153.38 Aligned_cols=141 Identities=20% Similarity=0.330 Sum_probs=85.9
Q ss_pred hhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccC---CCCCcEEEecCceeeeccC
Q 007362 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKH---PRGDSIQMDTKDILFICGG 462 (606)
Q Consensus 386 l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~---~~~~~v~idt~nii~I~tg 462 (606)
+..+.+++|||||++.+.+. +|+.|+++|+...+.+.+...... .....+ ..++.+|+++
T Consensus 197 ~~~a~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~---p~~~~vI~at 259 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV---PCDFVLVAAG 259 (604)
T ss_dssp HHHTTTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE---ECCCEEEEEE
T ss_pred eeecCCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCcc---ceeEEEEEec
Confidence 45568899999999999877 999999999966655432111000 000111 1345677777
Q ss_pred CCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC---eEEEcCCcC---H
Q 007362 463 AFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP---ILVSLTALT---E 536 (606)
Q Consensus 463 n~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d---~iI~f~~Ls---~ 536 (606)
|.. + .+.+.|+|++||+ ..+.|.+.. .
T Consensus 260 n~~-------------------------------------~----------~~~l~~~l~~R~~v~~i~i~l~~~~~~~~ 292 (604)
T 3k1j_A 260 NLD-------------------------------------T----------VDKMHPALRSRIRGYGYEVYMRTTMPDTI 292 (604)
T ss_dssp CHH-------------------------------------H----------HHHSCHHHHHHHHHHSEEEECCSEEECCH
T ss_pred CHH-------------------------------------H----------HhhcCHHHHHHhhccceEeeccccccCCH
Confidence 631 0 1127889999997 567776544 3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccC--CCCC-----ChHHHHHHHHHHHH
Q 007362 537 DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT--AKNT-----GARGLRAILESILT 598 (606)
Q Consensus 537 eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~--~~~~-----GAR~L~~~Ie~~l~ 598 (606)
+.+..++. .+.+++. ..+....+++++++.|.++.+ .... ..|.|.++++....
T Consensus 293 ~~~~~~l~----~~~~~~~----~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~ 353 (604)
T 3k1j_A 293 ENRRKLVQ----FVAQEVK----RDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGD 353 (604)
T ss_dssp HHHHHHHH----HHHHHHH----HHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHh----hccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHH
Confidence 33444433 2322222 223345799999999998764 3321 47889888876543
No 68
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.44 E-value=7e-13 Score=138.72 Aligned_cols=213 Identities=18% Similarity=0.183 Sum_probs=130.8
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---
Q 007362 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (606)
Q Consensus 273 ~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l--- 349 (606)
+.++|+++.++.|...+... .. .....+++|+||||||||++|+.+++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~--------~~-------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA--------LR-------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG--------TS-------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH--------Hc-------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34899999999987766310 00 0123789999999999999999999988
Q ss_pred ------CCceeecchhhhhhc---------------CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhc
Q 007362 350 ------NVPFVIADATTLTQA---------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES 408 (606)
Q Consensus 350 ------~~~fi~i~~s~l~~s---------------g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~ 408 (606)
+.+++.+++...... ...|......+..++..... ...+.||||||+|.+...+
T Consensus 72 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDEi~~l~~~~-- 146 (387)
T 2v1u_A 72 ASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSR---LRGIYIIVLDEIDFLPKRP-- 146 (387)
T ss_dssp HHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTT---SCSEEEEEEETTTHHHHST--
T ss_pred HhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEccHhhhcccC--
Confidence 788888887643210 01122222223333322211 1235699999999986541
Q ss_pred cccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccc
Q 007362 409 LNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRA 488 (606)
Q Consensus 409 ~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~ 488 (606)
+..+++..|++.++... . ..++++|++++..+
T Consensus 147 -------~~~~~l~~l~~~~~~~~------------------~-~~~~~~I~~t~~~~---------------------- 178 (387)
T 2v1u_A 147 -------GGQDLLYRITRINQELG------------------D-RVWVSLVGITNSLG---------------------- 178 (387)
T ss_dssp -------THHHHHHHHHHGGGCC------------------------CEEEEECSCST----------------------
T ss_pred -------CCChHHHhHhhchhhcC------------------C-CceEEEEEEECCCc----------------------
Confidence 00113444444433100 0 23556677666321
Q ss_pred ccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccccc
Q 007362 489 NMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHF 567 (606)
Q Consensus 489 ~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i 567 (606)
+...+.+.+.+|+.. .+.|++++.+++.+|+...+. ..+ ....+
T Consensus 179 ------------------------~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~-------~~~----~~~~~ 223 (387)
T 2v1u_A 179 ------------------------FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE-------EAF----NPGVL 223 (387)
T ss_dssp ------------------------TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH-------HHB----CTTTB
T ss_pred ------------------------hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH-------hhc----cCCCC
Confidence 011256778889886 899999999999999875421 111 13458
Q ss_pred CHHHHHHHHHccCCCCCChHHHHHHHHHHHHHH
Q 007362 568 TEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (606)
Q Consensus 568 ~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~a 600 (606)
++++++.|+++++...-.+|.+.++++..+..+
T Consensus 224 ~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 224 DPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp CSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 889999999886543344788888888776544
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=2.3e-12 Score=135.29 Aligned_cols=210 Identities=17% Similarity=0.193 Sum_probs=132.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCC--cEEEEcCCCCHHHHHHHHHHHHh--
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKS--NVLLMGPTGSGKTLLAKTLARHV-- 349 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~--~vLL~GPpGTGKT~lAralA~~l-- 349 (606)
.++|+++.++.|...+..... . . .+. +++|+||||||||++++++++.+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~----~--~---------------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLR----N--P---------------------GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHH----S--T---------------------TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHHHHc----C--C---------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 389999999999888752210 0 0 013 79999999999999999999998
Q ss_pred --CCceeecchhhhhhc-----------C----CcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccc
Q 007362 350 --NVPFVIADATTLTQA-----------G----YVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (606)
Q Consensus 350 --~~~fi~i~~s~l~~s-----------g----~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~ 412 (606)
+..++.+++...... + ..+......+..+..... ....+.||||||+|.+...
T Consensus 71 ~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~------- 140 (389)
T 1fnn_A 71 KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR---ERDLYMFLVLDDAFNLAPD------- 140 (389)
T ss_dssp SCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HTTCCEEEEEETGGGSCHH-------
T ss_pred hcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh---hcCCeEEEEEECccccchH-------
Confidence 567888886543210 0 011121222222111111 1124569999999998554
Q ss_pred cCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccccc
Q 007362 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (606)
Q Consensus 413 ~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~ 492 (606)
.+..|+.+++.... ....++.+|++++..++
T Consensus 141 -------~~~~L~~~~~~~~~-----------------~~~~~~~iI~~~~~~~~------------------------- 171 (389)
T 1fnn_A 141 -------ILSTFIRLGQEADK-----------------LGAFRIALVIVGHNDAV------------------------- 171 (389)
T ss_dssp -------HHHHHHHHTTCHHH-----------------HSSCCEEEEEEESSTHH-------------------------
T ss_pred -------HHHHHHHHHHhCCC-----------------CCcCCEEEEEEECCchH-------------------------
Confidence 88999999863100 00135566665543210
Q ss_pred ccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH
Q 007362 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA 571 (606)
Q Consensus 493 ~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a 571 (606)
...+.+.+.+|+.. .+.|++++.+++.+++...+. .. .....+++++
T Consensus 172 ---------------------~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~-------~~----~~~~~~~~~~ 219 (389)
T 1fnn_A 172 ---------------------LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK-------AG----LAEGSYSEDI 219 (389)
T ss_dssp ---------------------HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH-------HH----BCTTSSCHHH
T ss_pred ---------------------HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH-------hh----cCCCCCCHHH
Confidence 11145666777765 799999999999988875321 11 1123689999
Q ss_pred HHHHHHccCCC------CCChHHHHHHHHHHHHHHH
Q 007362 572 LRVIAKKATAK------NTGARGLRAILESILTEAM 601 (606)
Q Consensus 572 l~~La~~a~~~------~~GAR~L~~~Ie~~l~~al 601 (606)
++.|++..+.. .-..|.+.++++..+..+.
T Consensus 220 ~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 220 LQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp HHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 99999987533 3347888888887766543
No 70
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=7.3e-13 Score=135.54 Aligned_cols=186 Identities=18% Similarity=0.277 Sum_probs=122.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ ++|++++++.|...+... ...+++|+||+|||||++|+++++.+.
T Consensus 20 ~~~-~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 20 LSD-IVGNKETIDRLQQIAKDG-------------------------------NMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp GGG-CCSCTHHHHHHHHHHHSC-------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHH-HHCCHHHHHHHHHHHHcC-------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 344 789999999998877310 014599999999999999999999862
Q ss_pred -----CceeecchhhhhhcCCcccchHHHHHHHHHhhh---hhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHH
Q 007362 351 -----VPFVIADATTLTQAGYVGEDVESILYKLLAQAE---FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (606)
Q Consensus 351 -----~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~---~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~ 422 (606)
..++.+++.+.. + ...++.++.... ..+....+.||||||+|.+... .++
T Consensus 68 ~~~~~~~~~~~~~~~~~-----~---~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~ 125 (323)
T 1sxj_B 68 GRSYADGVLELNASDDR-----G---IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQ 125 (323)
T ss_dssp GGGHHHHEEEECTTSCC-----S---HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHH
T ss_pred CCcccCCEEEecCcccc-----C---hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHH
Confidence 345666654421 1 122333332221 0111224679999999999876 889
Q ss_pred HHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHH
Q 007362 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSS 502 (606)
Q Consensus 423 ~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ 502 (606)
.|++.++. ...+++||++++..
T Consensus 126 ~L~~~le~---------------------~~~~~~~il~~~~~------------------------------------- 147 (323)
T 1sxj_B 126 ALRRTMEL---------------------YSNSTRFAFACNQS------------------------------------- 147 (323)
T ss_dssp TTHHHHHH---------------------TTTTEEEEEEESCG-------------------------------------
T ss_pred HHHHHHhc---------------------cCCCceEEEEeCCh-------------------------------------
Confidence 99999983 11234455544421
Q ss_pred HHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCC
Q 007362 503 LLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAK 582 (606)
Q Consensus 503 ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~ 582 (606)
..+.+.+.+|+. ++.|.+++.+++.+++...+. ..+ +.+++++++.|++.+
T Consensus 148 ------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-----------~~~--~~~~~~~~~~l~~~~--- 198 (323)
T 1sxj_B 148 ------------NKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIK-----------LED--VKYTNDGLEAIIFTA--- 198 (323)
T ss_dssp ------------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHH-----------HHT--CCBCHHHHHHHHHHH---
T ss_pred ------------hhchhHHHhhce-EEeecCCCHHHHHHHHHHHHH-----------HcC--CCCCHHHHHHHHHHc---
Confidence 125677788875 899999999999888875311 112 348899999999874
Q ss_pred CCChHHHHHHHHHHH
Q 007362 583 NTGARGLRAILESIL 597 (606)
Q Consensus 583 ~~GAR~L~~~Ie~~l 597 (606)
+...|.+.+.++...
T Consensus 199 ~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 199 EGDMRQAINNLQSTV 213 (323)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 233577777776654
No 71
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.43 E-value=3.3e-12 Score=133.81 Aligned_cols=208 Identities=25% Similarity=0.374 Sum_probs=128.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ ++|++.+++.|...+.....+ + ....+++|+|||||||||+|+++|+.+
T Consensus 23 ~l~~-~~g~~~~~~~l~~~i~~~~~~--------~------------------~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 23 SLDE-FIGQENVKKKLSLALEAAKMR--------G------------------EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHHHHHH--------T------------------CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cHHH-ccCcHHHHHHHHHHHHHHHhc--------C------------------CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3454 689999999988777422100 0 012689999999999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+.++...++..+. . ...+..++... ....|+||||+|.+.+. +++.|+..|+
T Consensus 76 ~~~~~~~sg~~~~-------~-~~~l~~~~~~~------~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~ 127 (334)
T 1in4_A 76 QTNIHVTSGPVLV-------K-QGDMAAILTSL------ERGDVLFIDEIHRLNKA--------------VEELLYSAIE 127 (334)
T ss_dssp TCCEEEEETTTCC-------S-HHHHHHHHHHC------CTTCEEEEETGGGCCHH--------------HHHHHHHHHH
T ss_pred CCCEEEEechHhc-------C-HHHHHHHHHHc------cCCCEEEEcchhhcCHH--------------HHHHHHHHHH
Confidence 8887665554322 1 12222322211 24579999999998765 7888888887
Q ss_pred ceeeecC-CCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhc
Q 007362 430 GTIVNVP-EKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (606)
Q Consensus 430 g~~~~i~-~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~ 508 (606)
.....+. ..+. ....+......+.++.+++.
T Consensus 128 ~~~~~i~~~~~~----~~~~i~~~l~~~~li~at~~-------------------------------------------- 159 (334)
T 1in4_A 128 DFQIDIMIGKGP----SAKSIRIDIQPFTLVGATTR-------------------------------------------- 159 (334)
T ss_dssp TSCCCC-------------------CCCEEEEEESC--------------------------------------------
T ss_pred hcccceeeccCc----ccccccccCCCeEEEEecCC--------------------------------------------
Confidence 4221100 0000 00011111122333322221
Q ss_pred chhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHH
Q 007362 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARG 588 (606)
Q Consensus 509 ~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~ 588 (606)
...+.+.+.+||...+.|.+++.+++.+|+.+.. + .. .+.++++++++|++.+ .-.+|.
T Consensus 160 -----~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~--------~---~~--~~~~~~~~~~~ia~~~---~G~~R~ 218 (334)
T 1in4_A 160 -----SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA--------S---LM--DVEIEDAAAEMIAKRS---RGTPRI 218 (334)
T ss_dssp -----GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH--------H---HT--TCCBCHHHHHHHHHTS---TTCHHH
T ss_pred -----cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHH--------H---Hc--CCCcCHHHHHHHHHhc---CCChHH
Confidence 1136788899998889999999999999987531 1 11 3458999999999873 234688
Q ss_pred HHHHHHHHHHHHH
Q 007362 589 LRAILESILTEAM 601 (606)
Q Consensus 589 L~~~Ie~~l~~al 601 (606)
+.++++.+...+.
T Consensus 219 a~~ll~~~~~~a~ 231 (334)
T 1in4_A 219 AIRLTKRVRDMLT 231 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877655443
No 72
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.41 E-value=2.1e-12 Score=125.95 Aligned_cols=169 Identities=20% Similarity=0.288 Sum_probs=111.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC---CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~---~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
.+++|+||||||||++|+++++.+. .+++.+++.++... + .. .+.. ...+.+|||||+|.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-----~~----~~~~------~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-----TA----LLEG------LEQFDLICIDDVDAV 116 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-----GG----GGTT------GGGSSEEEEETGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-----HH----HHHh------ccCCCEEEEeccccc
Confidence 7899999999999999999999873 67778888776532 1 00 0111 125689999999988
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf 482 (606)
.... ..++.|+.+++... ....+.+|++++...
T Consensus 117 ~~~~------------~~~~~l~~~l~~~~-------------------~~~~~~ii~~~~~~~---------------- 149 (242)
T 3bos_A 117 AGHP------------LWEEAIFDLYNRVA-------------------EQKRGSLIVSASASP---------------- 149 (242)
T ss_dssp TTCH------------HHHHHHHHHHHHHH-------------------HHCSCEEEEEESSCT----------------
T ss_pred cCCH------------HHHHHHHHHHHHHH-------------------HcCCCeEEEEcCCCH----------------
Confidence 6651 13777777776311 111121333333210
Q ss_pred CcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
. . + ..+.+.+.+|+. .++.|.+++.+++.+++...+. .
T Consensus 150 --~-------------------------~-~-~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~-----------~ 189 (242)
T 3bos_A 150 --M-------------------------E-A-GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA-----------M 189 (242)
T ss_dssp --T-------------------------T-T-TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH-----------H
T ss_pred --H-------------------------H-H-HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH-----------H
Confidence 0 0 0 013366777775 7899999999998888875311 1
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
.+ +.++++++++|++.. .. ..|.|.++++.++..+..
T Consensus 190 ~~--~~~~~~~~~~l~~~~-~g--~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 190 RG--LQLPEDVGRFLLNRM-AR--DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp TT--CCCCHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHHHH
T ss_pred cC--CCCCHHHHHHHHHHc-cC--CHHHHHHHHHHHHHHHHH
Confidence 23 458999999999873 33 469999999988877653
No 73
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=2.6e-12 Score=142.49 Aligned_cols=205 Identities=17% Similarity=0.224 Sum_probs=123.5
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++++++.|..++....... ....+. .| ........++||+||||||||++|+++|+.++
T Consensus 38 ~~d-liG~~~~~~~L~~~l~~~~~~~-~~~~~~-~g------------~~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 38 LQQ-VCGNKGSVMKLKNWLANWENSK-KNSFKH-AG------------KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp GGG-CCSCHHHHHHHHHHHHTHHHHH-HTTTCC-CC------------TTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHH-hcCCHHHHHHHHHHHHHhHhhc-hhhccc-cC------------ccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 444 8999999999999886322111 011100 00 00001237899999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhh------hhhh--------hhcCCCEEEEcccchhhhhhhccccccCcc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQA------EFNV--------EAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a------~~~l--------~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s 416 (606)
.+++.++++++... ..+...+... ...+ ....+.||||||+|.+.....
T Consensus 103 ~~~i~in~s~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------- 165 (516)
T 1sxj_A 103 YDILEQNASDVRSK--------TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------- 165 (516)
T ss_dssp CEEEEECTTSCCCH--------HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST---------
T ss_pred CCEEEEeCCCcchH--------HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH---------
Confidence 99999999865421 1111111100 0000 123568999999999876421
Q ss_pred hhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccch
Q 007362 417 GEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTD 496 (606)
Q Consensus 417 ~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~ 496 (606)
+..+.|+++++.. ...+++|++....
T Consensus 166 --~~l~~L~~~l~~~---------------------~~~iIli~~~~~~------------------------------- 191 (516)
T 1sxj_A 166 --GGVGQLAQFCRKT---------------------STPLILICNERNL------------------------------- 191 (516)
T ss_dssp --THHHHHHHHHHHC---------------------SSCEEEEESCTTS-------------------------------
T ss_pred --HHHHHHHHHHHhc---------------------CCCEEEEEcCCCC-------------------------------
Confidence 1567888887731 0123334322110
Q ss_pred hHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Q 007362 497 AAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIA 576 (606)
Q Consensus 497 ~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La 576 (606)
...+++. |+...+.|.+++.+++.+++... . ...+ +.+++++++.|+
T Consensus 192 -------------------~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i----~-------~~~~--~~i~~~~l~~la 238 (516)
T 1sxj_A 192 -------------------PKMRPFD-RVCLDIQFRRPDANSIKSRLMTI----A-------IREK--FKLDPNVIDRLI 238 (516)
T ss_dssp -------------------STTGGGT-TTSEEEECCCCCHHHHHHHHHHH----H-------HHHT--CCCCTTHHHHHH
T ss_pred -------------------ccchhhH-hceEEEEeCCCCHHHHHHHHHHH----H-------HHcC--CCCCHHHHHHHH
Confidence 0113343 44468999999999988887642 1 1113 448889999999
Q ss_pred HccCCCCCChHHHHHHHHHHH
Q 007362 577 KKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 577 ~~a~~~~~GAR~L~~~Ie~~l 597 (606)
+.+ .-..|.+.++++...
T Consensus 239 ~~s---~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 239 QTT---RGDIRQVINLLSTIS 256 (516)
T ss_dssp HHT---TTCHHHHHHHHTHHH
T ss_pred HHc---CCcHHHHHHHHHHHH
Confidence 874 223577777776543
No 74
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.40 E-value=2.7e-13 Score=148.70 Aligned_cols=149 Identities=24% Similarity=0.324 Sum_probs=96.0
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l- 349 (606)
++. |+|+++.++.|...+.+ ..+.++||+||||||||++|++||+.+
T Consensus 179 ld~-iiGr~~~i~~l~~~l~r-------------------------------~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 179 LDP-VIGRSKEIQRVIEVLSR-------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC-------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCC-ccCcHHHHHHHHHHHhc-------------------------------cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 444 89999999998777731 123789999999999999999999997
Q ss_pred ---------CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 350 ---------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 350 ---------~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
+.+|+.+++. ..|.|.. +..+..++..+.. ..++||||| .... +
T Consensus 227 ~~~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~~----~~~~iLfiD----~~~~--------------a 279 (468)
T 3pxg_A 227 NNEVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIRQ----AGNIILFID----AAID--------------A 279 (468)
T ss_dssp SSCSCTTTSSCCEECC---------------CTTHHHHHHHHHT----CCCCEEEEC----C------------------
T ss_pred hCCCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHHh----cCCeEEEEe----Cchh--------------H
Confidence 6788888887 2355543 3445566655543 367899999 1111 7
Q ss_pred HHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhH
Q 007362 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (606)
Q Consensus 421 q~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~ 500 (606)
++.|+..|+. .++.+|+++|..+..+.+
T Consensus 280 ~~~L~~~L~~-----------------------g~v~vI~at~~~e~~~~~----------------------------- 307 (468)
T 3pxg_A 280 SNILKPSLAR-----------------------GELQCIGATTLDEYRKYI----------------------------- 307 (468)
T ss_dssp ----CCCTTS-----------------------SSCEEEEECCTTTTHHHH-----------------------------
T ss_pred HHHHHHhhcC-----------------------CCEEEEecCCHHHHHHHh-----------------------------
Confidence 7778887762 245567776654322111
Q ss_pred HHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhh
Q 007362 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (606)
Q Consensus 501 ~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~ 546 (606)
.+.+.|.+||+ +|.|..++.+++..|+...
T Consensus 308 ---------------~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~ 337 (468)
T 3pxg_A 308 ---------------EKDAALERRFQ-PIQVDQPSVDESIQILQGL 337 (468)
T ss_dssp ---------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHT
T ss_pred ---------------hcCHHHHHhCc-cceeCCCCHHHHHHHHHHH
Confidence 25688999996 6999999999999998753
No 75
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.40 E-value=1.4e-12 Score=142.08 Aligned_cols=174 Identities=17% Similarity=0.296 Sum_probs=113.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhh--hhc-CCCEEEEc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV--EAA-QQGMVYID 397 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l--~~a-~~~ILfID 397 (606)
.+++|+||||||||+||+++++.+ +.+++.+++..+... .+..+.......+ ... .+.|||||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~vL~ID 201 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND---------LVDSMKEGKLNEFREKYRKKVDILLID 201 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH---------HHHHHHTTCHHHHHHHHTTTCSEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH---------HHHHHHcccHHHHHHHhcCCCCEEEEe
Confidence 689999999999999999999988 778888888775421 1111111000001 112 56899999
Q ss_pred ccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcc
Q 007362 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD 477 (606)
Q Consensus 398 EiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~ 477 (606)
|+|.+..+. ..++.|+..|+... .....++|.+.+...
T Consensus 202 Ei~~l~~~~------------~~q~~l~~~l~~l~-------------------~~~~~iIitt~~~~~----------- 239 (440)
T 2z4s_A 202 DVQFLIGKT------------GVQTELFHTFNELH-------------------DSGKQIVICSDREPQ----------- 239 (440)
T ss_dssp CGGGGSSCH------------HHHHHHHHHHHHHH-------------------TTTCEEEEEESSCGG-----------
T ss_pred CcccccCCh------------HHHHHHHHHHHHHH-------------------HCCCeEEEEECCCHH-----------
Confidence 999987631 16777888776311 011122232222100
Q ss_pred cCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHH
Q 007362 478 SSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYK 555 (606)
Q Consensus 478 ~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~ 555 (606)
+ + ..+.+.+++||. .++.|.+++.+++..|+...+.
T Consensus 240 ---------------------------------~-l-~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~------- 277 (440)
T 2z4s_A 240 ---------------------------------K-L-SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE------- 277 (440)
T ss_dssp ---------------------------------G-C-SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH-------
T ss_pred ---------------------------------H-H-HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH-------
Confidence 0 0 015677888885 6889999999999988875321
Q ss_pred HHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHH
Q 007362 556 RLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 556 ~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al 601 (606)
.. .+.++++++++|+... ...+|.|..+++.++..+.
T Consensus 278 ----~~--~~~i~~e~l~~la~~~---~gn~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 278 ----IE--HGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp ----HH--TCCCCTTHHHHHHHHC---CSCHHHHHHHHHHHHHHHH
T ss_pred ----Hc--CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 11 2458899999999873 3457999999998877654
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.5e-12 Score=133.06 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=46.5
Q ss_pred CcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccC-HHHHHHHHHccCCCCCChHHHHHHHHH
Q 007362 517 LIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFT-EKALRVIAKKATAKNTGARGLRAILES 595 (606)
Q Consensus 517 l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~-e~al~~La~~a~~~~~GAR~L~~~Ie~ 595 (606)
+.+.+.+|+ ..+.|.+++.+++.+++..... ..+ +.++ +++++.|++.+ +-+.|.+.+.++.
T Consensus 177 l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~-----------~~~--~~~~~~~~l~~i~~~~---~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 177 IIAPIKSQC-LLIRCPAPSDSEISTILSDVVT-----------NER--IQLETKDILKRIAQAS---NGNLRVSLLMLES 239 (354)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH-----------HHT--CEECCSHHHHHHHHHH---TTCHHHHHHHHTH
T ss_pred HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHH-----------HcC--CCCCcHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 567788898 7899999999998888775311 123 4478 88999998774 2345777777776
Q ss_pred HHH
Q 007362 596 ILT 598 (606)
Q Consensus 596 ~l~ 598 (606)
...
T Consensus 240 ~~~ 242 (354)
T 1sxj_E 240 MAL 242 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.36 E-value=8.1e-12 Score=146.45 Aligned_cols=189 Identities=20% Similarity=0.298 Sum_probs=112.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l- 349 (606)
++. |+|+++.++.+...+.. ..+.+++|+||||||||++|+++|+.+
T Consensus 169 ld~-viGr~~~i~~l~~~l~~-------------------------------~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 169 LDP-VIGRDEEIRRVIQILLR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp SCC-CCSCHHHHHHHHHHHHC-------------------------------SSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred Ccc-cCCcHHHHHHHHHHHhc-------------------------------CCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 444 89999988888776631 013689999999999999999999987
Q ss_pred ---------CCceeecchhhhhh-cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhH
Q 007362 350 ---------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (606)
Q Consensus 350 ---------~~~fi~i~~s~l~~-sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~ 419 (606)
+.+++.+++..+.. ..+.|.. +..+..++...... ..+.||||||+|.+...... ..+ ..
T Consensus 217 ~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~-~g~-----~~ 286 (854)
T 1qvr_A 217 KGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKA-EGA-----VD 286 (854)
T ss_dssp HTCSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHTT---CSSEEEEECCC--------------------
T ss_pred cCCCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHhc---CCCeEEEEecHHHHhccCCc-cch-----HH
Confidence 78899999887752 3455544 55566666655321 24679999999998754221 111 23
Q ss_pred HHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHh
Q 007362 420 VQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAV 499 (606)
Q Consensus 420 vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~ 499 (606)
+.+.|..+++. ..+.+|++++.....+
T Consensus 287 ~~~~L~~~l~~-----------------------~~i~~I~at~~~~~~~------------------------------ 313 (854)
T 1qvr_A 287 AGNMLKPALAR-----------------------GELRLIGATTLDEYRE------------------------------ 313 (854)
T ss_dssp -----HHHHHT-----------------------TCCCEEEEECHHHHHH------------------------------
T ss_pred HHHHHHHHHhC-----------------------CCeEEEEecCchHHhh------------------------------
Confidence 67778888762 1234555555321100
Q ss_pred HHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHcc
Q 007362 500 TSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (606)
Q Consensus 500 ~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a 579 (606)
..+.+.|++||+. |.|++++.++..+|+... .+.+.. .+ .+.++++++..+++..
T Consensus 314 ---------------~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~----~~~~~~---~~--~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 314 ---------------IEKDPALERRFQP-VYVDEPTVEETISILRGL----KEKYEV---HH--GVRISDSAIIAAATLS 368 (854)
T ss_dssp ---------------HTTCTTTCSCCCC-EEECCCCHHHHHHHHHHH----HHHHHH---HT--TCEECHHHHHHHHHHH
T ss_pred ---------------hccCHHHHhCCce-EEeCCCCHHHHHHHHHhh----hhhhhh---hc--CCCCCHHHHHHHHHHH
Confidence 1156889999985 899999999999998753 333322 12 3558899988888753
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=2.1e-12 Score=135.07 Aligned_cols=171 Identities=20% Similarity=0.307 Sum_probs=109.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ ++||+++++.|...+... ...|++|+||||||||++|+++|+.+.
T Consensus 24 ~~~-~~g~~~~~~~L~~~i~~g-------------------------------~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 24 LDE-VYGQNEVITTVRKFVDEG-------------------------------KLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp GGG-CCSCHHHHHHHHHHHHTT-------------------------------CCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHH-hcCcHHHHHHHHHHHhcC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 444 789999999988777410 014699999999999999999999874
Q ss_pred C-----ceeecchhhhhhcCCcccchHHHHHHHHHhhh--hhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHH
Q 007362 351 V-----PFVIADATTLTQAGYVGEDVESILYKLLAQAE--FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (606)
Q Consensus 351 ~-----~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~--~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~ 423 (606)
. .++.+++++. .+. ..++..+.... .........|++|||+|.++.. .+++
T Consensus 72 ~~~~~~~~~~~~~~~~-----~~~---~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~ 129 (340)
T 1sxj_C 72 GKNYSNMVLELNASDD-----RGI---DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--------------AQNA 129 (340)
T ss_dssp TTSHHHHEEEECTTSC-----CSH---HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------------HHHH
T ss_pred CCCccceEEEEcCccc-----ccH---HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------------HHHH
Confidence 3 2444444331 111 12222222111 0001124679999999999876 8999
Q ss_pred HHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHH
Q 007362 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (606)
Q Consensus 424 LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~l 503 (606)
|++.||.. ..+..||++++..
T Consensus 130 L~~~le~~---------------------~~~~~~il~~n~~-------------------------------------- 150 (340)
T 1sxj_C 130 LRRVIERY---------------------TKNTRFCVLANYA-------------------------------------- 150 (340)
T ss_dssp HHHHHHHT---------------------TTTEEEEEEESCG--------------------------------------
T ss_pred HHHHHhcC---------------------CCCeEEEEEecCc--------------------------------------
Confidence 99999841 1233444444421
Q ss_pred HhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHcc
Q 007362 504 LESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (606)
Q Consensus 504 l~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a 579 (606)
..+.|.+.+|+. ++.|.+++.+++.+++... +...+ +.+++++++.|++.+
T Consensus 151 -----------~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~-----------~~~~~--~~i~~~~~~~i~~~s 201 (340)
T 1sxj_C 151 -----------HKLTPALLSQCT-RFRFQPLPQEAIERRIANV-----------LVHEK--LKLSPNAEKALIELS 201 (340)
T ss_dssp -----------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHH-----------HHTTT--CCBCHHHHHHHHHHH
T ss_pred -----------cccchhHHhhce-eEeccCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc
Confidence 126678888885 7889999998887776542 11122 347788888887763
No 79
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.36 E-value=1.6e-12 Score=121.55 Aligned_cols=115 Identities=25% Similarity=0.336 Sum_probs=75.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l----- 349 (606)
++|+++.++.+...+.. ....+++|+||||||||++|+++++.+
T Consensus 24 ~~g~~~~~~~l~~~l~~-------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~ 72 (187)
T 2p65_A 24 VIGRDTEIRRAIQILSR-------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDV 72 (187)
T ss_dssp CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCS
T ss_pred hhcchHHHHHHHHHHhC-------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 79999988888776621 013689999999999999999999987
Q ss_pred -----CCceeecchhhhhhc-CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHH
Q 007362 350 -----NVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (606)
Q Consensus 350 -----~~~fi~i~~s~l~~s-g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~ 423 (606)
+.+++.+++..+... .+.+.. ...+..++..... ...+.||||||+|.+...+...+.. .++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~~-----~~~~~~ 143 (187)
T 2p65_A 73 PDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQD---AEGQVVMFIDEIHTVVGAGAVAEGA-----LDAGNI 143 (187)
T ss_dssp CTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHHH---TTTSEEEEETTGGGGSSSSSSCTTS-----CCTHHH
T ss_pred cchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHHh---cCCceEEEEeCHHHhcccccccccc-----hHHHHH
Confidence 677888887765532 122222 2334444433321 1245699999999987542211111 127777
Q ss_pred HHHHHh
Q 007362 424 LLKMLE 429 (606)
Q Consensus 424 LL~~Le 429 (606)
|+.+++
T Consensus 144 l~~~~~ 149 (187)
T 2p65_A 144 LKPMLA 149 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888776
No 80
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=1.7e-11 Score=127.97 Aligned_cols=209 Identities=16% Similarity=0.207 Sum_probs=128.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh----
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---- 349 (606)
.++|+++.++.|...+... .. ......++|+||+|||||++++.+++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~--------~~-------------------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPL--------YR-------------------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGG--------GG-------------------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHH--------Hc-------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 3799999999887766311 00 0113689999999999999999999988
Q ss_pred --CCceeecchhhhhhc---------------CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccc
Q 007362 350 --NVPFVIADATTLTQA---------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (606)
Q Consensus 350 --~~~fi~i~~s~l~~s---------------g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~ 412 (606)
+..++.+++...... ...+......+..++..... ...+.||||||++.+.....
T Consensus 74 ~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l~~~~~----- 145 (386)
T 2qby_A 74 LGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD---YGSQVVIVLDEIDAFVKKYN----- 145 (386)
T ss_dssp CSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT---CCSCEEEEEETHHHHHHSSC-----
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEcChhhhhccCc-----
Confidence 788888887643210 01122222223333322211 12367999999999875410
Q ss_pred cCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccccc
Q 007362 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (606)
Q Consensus 413 ~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~ 492 (606)
..++..|+..++.. ...++.+|++++..++
T Consensus 146 -----~~~l~~l~~~~~~~--------------------~~~~~~~I~~~~~~~~------------------------- 175 (386)
T 2qby_A 146 -----DDILYKLSRINSEV--------------------NKSKISFIGITNDVKF------------------------- 175 (386)
T ss_dssp -----STHHHHHHHHHHSC--------------------CC--EEEEEEESCGGG-------------------------
T ss_pred -----CHHHHHHhhchhhc--------------------CCCeEEEEEEECCCCh-------------------------
Confidence 12777888887631 1234566666553210
Q ss_pred ccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH
Q 007362 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA 571 (606)
Q Consensus 493 ~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a 571 (606)
...+.+.+.+|+.. .+.|++++.+++.+++...+. .. .....+++++
T Consensus 176 ---------------------~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~-------~~----~~~~~~~~~~ 223 (386)
T 2qby_A 176 ---------------------VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ-------MA----FKPGVLPDNV 223 (386)
T ss_dssp ---------------------GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH-------HH----BCSSCSCHHH
T ss_pred ---------------------HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH-------hh----ccCCCCCHHH
Confidence 01144566677764 899999999999999875321 11 1134588999
Q ss_pred HHHHHHccCCCCCChHHHHHHHHHHHHH
Q 007362 572 LRVIAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 572 l~~La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
+++|++......-..|.+.++++.....
T Consensus 224 ~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 224 IKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999887643223467777777665543
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.33 E-value=1.8e-12 Score=149.94 Aligned_cols=172 Identities=23% Similarity=0.335 Sum_probs=109.5
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l- 349 (606)
++. |+|+++.++.|...+.. ..+.++||+||||||||++|++||+.+
T Consensus 179 ld~-iiG~~~~i~~l~~~l~~-------------------------------~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 179 LDP-VIGRSKEIQRVIEVLSR-------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC-------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCC-ccCchHHHHHHHHHHhC-------------------------------CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 444 89999999999877741 123789999999999999999999997
Q ss_pred ---------CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 350 ---------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 350 ---------~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
+.+++.+++ ...|.|+. +..++.++..+.. ..++||||| .... +
T Consensus 227 ~~~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~~----~~~~iLfiD----~~~~--------------~ 279 (758)
T 3pxi_A 227 NNEVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIRQ----AGNIILFID----AAID--------------A 279 (758)
T ss_dssp SSCSCTTTSSCCEECC---------------CTTHHHHHHHHHT----CCCCEEEEC----C------------------
T ss_pred cCCCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHHh----cCCEEEEEc----Cchh--------------H
Confidence 778888887 23456654 4556677766543 378999999 1111 7
Q ss_pred HHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhH
Q 007362 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (606)
Q Consensus 421 q~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~ 500 (606)
++.|+..|+. .++.+|+++|.....+.+
T Consensus 280 ~~~L~~~l~~-----------------------~~v~~I~at~~~~~~~~~----------------------------- 307 (758)
T 3pxi_A 280 SNILKPSLAR-----------------------GELQCIGATTLDEYRKYI----------------------------- 307 (758)
T ss_dssp ----CCCTTS-----------------------SSCEEEEECCTTTTHHHH-----------------------------
T ss_pred HHHHHHHHhc-----------------------CCEEEEeCCChHHHHHHh-----------------------------
Confidence 7778877762 235567777654322221
Q ss_pred HHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 501 ~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
.+.|.|.+|| ..|.|..++.+++.+|+...+ +.+. ....+.+++++++.+++.
T Consensus 308 ---------------~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~----~~~~-----~~~~~~i~~~al~~~~~~ 360 (758)
T 3pxi_A 308 ---------------EKDAALERRF-QPIQVDQPSVDESIQILQGLR----DRYE-----AHHRVSITDDAIEAAVKL 360 (758)
T ss_dssp ---------------TTCSHHHHSE-EEEECCCCCHHHHHHHHHHTT----TTSG-----GGSSCSCCHHHHHHHHHH
T ss_pred ---------------hccHHHHhhC-cEEEeCCCCHHHHHHHHHHHH----HHHH-----HhcCCCCCHHHHHHHHHH
Confidence 1578899999 579999999999999987431 1111 123345788888777654
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.32 E-value=2.4e-12 Score=148.74 Aligned_cols=191 Identities=23% Similarity=0.356 Sum_probs=122.2
Q ss_pred HhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 269 ~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..++. |+|+++.++.+...+.. ..+.++||+||||||||++|+++|+.
T Consensus 183 ~~~d~-~iGr~~~i~~l~~~l~~-------------------------------~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 183 GGIDP-LIGREKELERAIQVLCR-------------------------------RRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp TCSCC-CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCC-ccCCHHHHHHHHHHHhc-------------------------------cCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 34454 89999999988776631 02378999999999999999999998
Q ss_pred h----------CCceeecchhhhhh-cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcch
Q 007362 349 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (606)
Q Consensus 349 l----------~~~fi~i~~s~l~~-sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~ 417 (606)
+ +..++.+++..+.. ..+.|.. +..+..++..... ..++||||||+|.+....... ...
T Consensus 231 l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~-----~~~ 300 (758)
T 1r6b_X 231 IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAAS-----GGQ 300 (758)
T ss_dssp HHHTCSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCSS-----SCH
T ss_pred HHhCCCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHHh----cCCeEEEEechHHHhhcCCCC-----cch
Confidence 7 45677777766552 3455654 5667777765543 257899999999986542211 111
Q ss_pred hHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchh
Q 007362 418 EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDA 497 (606)
Q Consensus 418 ~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~ 497 (606)
.++++.|..+++ ..++.+|++++..++
T Consensus 301 ~~~~~~L~~~l~-----------------------~~~~~~I~at~~~~~------------------------------ 327 (758)
T 1r6b_X 301 VDAANLIKPLLS-----------------------SGKIRVIGSTTYQEF------------------------------ 327 (758)
T ss_dssp HHHHHHHSSCSS-----------------------SCCCEEEEEECHHHH------------------------------
T ss_pred HHHHHHHHHHHh-----------------------CCCeEEEEEeCchHH------------------------------
Confidence 235555555543 123455655552210
Q ss_pred HhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Q 007362 498 AVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAK 577 (606)
Q Consensus 498 ~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~ 577 (606)
.. .....+.|.+||+ .+.|..++.++..+|+...+ +.+.. ...+.+++++++.++.
T Consensus 328 ------~~--------~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~----~~~~~-----~~~v~~~~~al~~~~~ 383 (758)
T 1r6b_X 328 ------SN--------IFEKDRALARRFQ-KIDITEPSIEETVQIINGLK----PKYEA-----HHDVRYTAKAVRAAVE 383 (758)
T ss_dssp ------HC--------CCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHH----HHHHH-----HHTCCCCHHHHHHHHH
T ss_pred ------hh--------hhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHH----HHHHH-----hcCCCCCHHHHHHHHH
Confidence 00 0114678999997 79999999999999987533 22222 1234577888877775
Q ss_pred c
Q 007362 578 K 578 (606)
Q Consensus 578 ~ 578 (606)
.
T Consensus 384 ~ 384 (758)
T 1r6b_X 384 L 384 (758)
T ss_dssp H
T ss_pred H
Confidence 4
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.32 E-value=2.2e-11 Score=127.45 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=97.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec--------chh--------hhhhcCC----cccchHHHHHHHHHhhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA--------DAT--------TLTQAGY----VGEDVESILYKLLAQAEFN 385 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i--------~~s--------~l~~sg~----vG~~~~~~l~~lf~~a~~~ 385 (606)
..+||+||+|||||++|+++|+.+....... +|. ++..-.- .... ...++.+.+.....
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~-i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLG-VDAVREVTEKLNEH 103 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBC-HHHHHHHHHHTTSC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCC-HHHHHHHHHHHhhc
Confidence 4599999999999999999999986432110 000 0100000 0011 23455555554332
Q ss_pred hhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCc
Q 007362 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (606)
Q Consensus 386 l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~ 465 (606)
...+...|+||||+|+++.. .+++||+.||. ...+++||++++..
T Consensus 104 ~~~~~~kvviIdead~l~~~--------------a~naLLk~lEe---------------------p~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLTDA--------------AANALLKTLEE---------------------PPAETWFFLATREP 148 (334)
T ss_dssp CTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTS---------------------CCTTEEEEEEESCG
T ss_pred cccCCcEEEEECchhhcCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEeCCh
Confidence 22345789999999999877 89999999984 12345666654421
Q ss_pred ChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhh
Q 007362 466 DLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (606)
Q Consensus 466 ~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~ 545 (606)
..+.|.+.+|+ .++.|.+++.+++.+++..
T Consensus 149 -------------------------------------------------~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~ 178 (334)
T 1a5t_A 149 -------------------------------------------------ERLLATLRSRC-RLHYLAPPPEQYAVTWLSR 178 (334)
T ss_dssp -------------------------------------------------GGSCHHHHTTS-EEEECCCCCHHHHHHHHHH
T ss_pred -------------------------------------------------HhCcHHHhhcc-eeeeCCCCCHHHHHHHHHH
Confidence 12677888898 4799999999998888764
Q ss_pred hHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 546 PKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 546 ~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
. ..+++++++.+++.
T Consensus 179 ~------------------~~~~~~~~~~l~~~ 193 (334)
T 1a5t_A 179 E------------------VTMSQDALLAALRL 193 (334)
T ss_dssp H------------------CCCCHHHHHHHHHH
T ss_pred h------------------cCCCHHHHHHHHHH
Confidence 2 14677887877766
No 84
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.31 E-value=2.4e-12 Score=140.25 Aligned_cols=234 Identities=15% Similarity=0.170 Sum_probs=137.8
Q ss_pred hHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHH
Q 007362 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (606)
Q Consensus 264 ~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAr 343 (606)
-+.+.+++.. |+||+.+|+.|..++... . .. .....||||.|+||| ||++|+
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG--------~-------~k-----------~rgdihVLL~G~PGt-KS~Lar 256 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFSC--------V-------GK-----------NSERLHVLLAGYPVV-CSEILH 256 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTTC--------C-------SS-----------GGGCCCEEEESCHHH-HHHHHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcCC--------c-------cc-----------cCCceeEEEECCCCh-HHHHHH
Confidence 4567888888 999999999997777310 0 00 112359999999999 999999
Q ss_pred HH-HHHhCCceee-cchh---hhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 344 TL-ARHVNVPFVI-ADAT---TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 344 al-A~~l~~~fi~-i~~s---~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
++ ++.+....+. ..++ .+... +. + . .. +....+.+..++++|+|||||+++.++
T Consensus 257 ~i~~~i~pR~~ft~g~~ss~~gLt~s-~r--~-~---tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~------------- 315 (506)
T 3f8t_A 257 HVLDHLAPRGVYVDLRRTELTDLTAV-LK--E-D---RG-WALRAGAAVLADGGILAVDHLEGAPEP------------- 315 (506)
T ss_dssp HHHHHTCSSEEEEEGGGCCHHHHSEE-EE--E-S---SS-EEEEECHHHHTTTSEEEEECCTTCCHH-------------
T ss_pred HHHHHhCCCeEEecCCCCCccCceEE-EE--c-C---CC-cccCCCeeEEcCCCeeehHhhhhCCHH-------------
Confidence 99 8776432221 1111 12211 10 0 0 11 222344566678999999999999888
Q ss_pred HHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhH
Q 007362 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~ 498 (606)
+|.+|++.||.+.+++. |. .+. .++.+|+|.|... .|... .
T Consensus 316 -~qsaLlEaMEe~~VtI~--G~---------~lp-arf~VIAA~NP~~--------------~yd~~-~----------- 356 (506)
T 3f8t_A 316 -HRWALMEAMDKGTVTVD--GI---------ALN-ARCAVLAAINPGE--------------QWPSD-P----------- 356 (506)
T ss_dssp -HHHHHHHHHHHSEEEET--TE---------EEE-CCCEEEEEECCCC----------------CCS-C-----------
T ss_pred -HHHHHHHHHhCCcEEEC--CE---------EcC-CCeEEEEEeCccc--------------ccCCC-C-----------
Confidence 99999999998777765 21 232 3355566666431 01000 0
Q ss_pred hHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHH-----HHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHH
Q 007362 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQL-----VKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALR 573 (606)
Q Consensus 499 ~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel-----~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~ 573 (606)
.+ + ...+.+++++|||.++.+..+...+. ..++. .+..++|....+...+...+++++.+
T Consensus 357 ---s~-~--------~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~~ar~~~~~p~ls~ea~~ 421 (506)
T 3f8t_A 357 ---PI-A--------RIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLLYAIREHPAPELTEEARK 421 (506)
T ss_dssp ---GG-G--------GCCSCHHHHTTCSEEEETTC--------------CC---HHHHHHHHHHHHHHCSCCEECHHHHH
T ss_pred ---Cc-c--------ccCCChHHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHHHHHhcCCCceeCHHHHH
Confidence 00 1 22488999999999777655433221 11222 13344444444323456779999888
Q ss_pred HHHHcc---------------CCCCCChHHHHHHHHHHHHHH
Q 007362 574 VIAKKA---------------TAKNTGARGLRAILESILTEA 600 (606)
Q Consensus 574 ~La~~a---------------~~~~~GAR~L~~~Ie~~l~~a 600 (606)
+|.+.. ..-..+.|.+..++.-.-..|
T Consensus 422 yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A 463 (506)
T 3f8t_A 422 RLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHA 463 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHH
Confidence 887541 122455788888775443333
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=5.9e-12 Score=130.91 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh------C
Q 007362 277 GQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV------N 350 (606)
Q Consensus 277 Gqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l------~ 350 (606)
||+++++.|..++.+. . ..++||+||||||||++|+++|+.+ .
T Consensus 1 g~~~~~~~L~~~i~~~--------~-----------------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~ 49 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--------E-----------------------GISILINGEDLSYPREVSLELPEYVEKFPPKA 49 (305)
T ss_dssp ---CHHHHHHHHHHTC--------S-----------------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCT
T ss_pred ChHHHHHHHHHHHHCC--------C-----------------------CcEEEEECCCCCCHHHHHHHHHHhCchhhccC
Confidence 7888888888877411 0 1589999999999999999999864 2
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
..|+.+++.. ...+ ...++.+.+.+......+...|+||||+|.++.. .+++||+.||.
T Consensus 50 ~d~~~l~~~~----~~~~---id~ir~li~~~~~~p~~~~~kvviIdead~lt~~--------------a~naLLk~LEe 108 (305)
T 2gno_A 50 SDVLEIDPEG----ENIG---IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ--------------AANAFLKALEE 108 (305)
T ss_dssp TTEEEECCSS----SCBC---HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH--------------HHHHTHHHHHS
T ss_pred CCEEEEcCCc----CCCC---HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH--------------HHHHHHHHHhC
Confidence 3555555432 0122 2234555554432222235679999999999887 89999999994
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.97 E-value=6.3e-09 Score=110.01 Aligned_cols=217 Identities=19% Similarity=0.179 Sum_probs=118.1
Q ss_pred hcCCHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEE--EcCCCCHHHHHHHHHHHHh-
Q 007362 274 FVIGQEKAKKVLSVAV-YNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLL--MGPTGSGKTLLAKTLARHV- 349 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av-~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL--~GPpGTGKT~lAralA~~l- 349 (606)
.++|.++.++.|...+ ... ... . .....+++| +||+|+|||++++.+++.+
T Consensus 23 ~l~gR~~el~~l~~~l~~~~----~~~-~--------------------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRL----LSG-A--------------------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHH----HTS-S--------------------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhHHH----hcC-C--------------------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3799999888887776 411 000 0 001257899 9999999999999999876
Q ss_pred --------CCceeecchhhhhhc-----------CC----cccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhh
Q 007362 350 --------NVPFVIADATTLTQA-----------GY----VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (606)
Q Consensus 350 --------~~~fi~i~~s~l~~s-----------g~----vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r 406 (606)
+..++.+++...... +. .+......+..+..... ....+.||||||+|.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~llvlDe~~~l~~~~ 154 (412)
T 1w5s_A 78 EAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY---VENHYLLVILDEFQSMLSSP 154 (412)
T ss_dssp HHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH---HHTCEEEEEEESTHHHHSCT
T ss_pred HHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEEeCHHHHhhcc
Confidence 345667775321100 00 01111122222211111 12346799999999886420
Q ss_pred hccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEec--CceeeeccCCCcChHHHHHhhhcccCCCcCc
Q 007362 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDT--KDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (606)
Q Consensus 407 ~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt--~nii~I~tgn~~~l~~~i~~~~~~~~igf~~ 484 (606)
. ...+++..|+..++... .+. .++.+|++++..++.+.+.
T Consensus 155 ~--------~~~~~l~~l~~~~~~~~------------------~~~~~~~v~lI~~~~~~~~~~~l~------------ 196 (412)
T 1w5s_A 155 R--------IAAEDLYTLLRVHEEIP------------------SRDGVNRIGFLLVASDVRALSYMR------------ 196 (412)
T ss_dssp T--------SCHHHHHHHHTHHHHSC------------------CTTSCCBEEEEEEEEETHHHHHHH------------
T ss_pred C--------cchHHHHHHHHHHHhcc------------------cCCCCceEEEEEEeccccHHHHHh------------
Confidence 0 01126666777765210 012 4566666654222111110
Q ss_pred ccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcc
Q 007362 485 PVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVK 564 (606)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~ 564 (606)
. ..+.+.+++...+.|.+|+.+++.+++...+. .. ...
T Consensus 197 --------------------~-----------~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~-------~~----~~~ 234 (412)
T 1w5s_A 197 --------------------E-----------KIPQVESQIGFKLHLPAYKSRELYTILEQRAE-------LG----LRD 234 (412)
T ss_dssp --------------------H-----------HCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH-------HH----BCT
T ss_pred --------------------h-----------hcchhhhhcCCeeeeCCCCHHHHHHHHHHHHH-------hc----CCC
Confidence 0 00334445545589999999999988875321 11 112
Q ss_pred cccCHHHHHHHHHccCCCC---CChHHHHHHHHHHHH
Q 007362 565 LHFTEKALRVIAKKATAKN---TGARGLRAILESILT 598 (606)
Q Consensus 565 l~i~e~al~~La~~a~~~~---~GAR~L~~~Ie~~l~ 598 (606)
..+++++++.|++.+.... -..|.+..++...+.
T Consensus 235 ~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~ 271 (412)
T 1w5s_A 235 TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACE 271 (412)
T ss_dssp TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 3478888998888754211 225666666655443
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.71 E-value=2.3e-08 Score=94.52 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=43.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh----CCceeecchhhhhhcCCcccchHHHHHHHHHhhh---hhhhhcCCCEEEEcc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAE---FNVEAAQQGMVYIDE 398 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~---~~l~~a~~~ILfIDE 398 (606)
.+++|+||+|||||++++++++.+ +..++.+++.++... +...+.... ..-....+.+|||||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR----------LKHLMDEGKDTKFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH----------HHHHHHHTCCSHHHHHHHTCSEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH----------HHHHhcCchHHHHHHHhcCCCEEEEeC
Confidence 789999999999999999999887 556666666654421 111111000 000112568999999
Q ss_pred cch
Q 007362 399 VDK 401 (606)
Q Consensus 399 iD~ 401 (606)
++.
T Consensus 109 ~~~ 111 (180)
T 3ec2_A 109 LGS 111 (180)
T ss_dssp CSS
T ss_pred CCC
Confidence 984
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.67 E-value=2.4e-08 Score=127.95 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=94.6
Q ss_pred CcEEEEcCCCCHHHHHH-HHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhh-h------hhh-h---hcCCCE
Q 007362 326 SNVLLMGPTGSGKTLLA-KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA-E------FNV-E---AAQQGM 393 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lA-ralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a-~------~~l-~---~a~~~I 393 (606)
.++||+||||||||++| +++++..+..++.++++..+.+ ..+...+... . +.+ . ..+..|
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 78999999999999999 5555544677777777655422 2222333221 1 000 0 224569
Q ss_pred EEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHH
Q 007362 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~ 472 (606)
|||||++....++- ++ ..++..|.++|| |+... ... .. .+...++.+|++.|...
T Consensus 1340 lFiDEinmp~~d~y---g~-----q~~lelLRq~le~gg~yd-~~~-------~~--~~~~~~i~lIaA~Npp~------ 1395 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY---GS-----QNVVLFLRQLMEKQGFWK-TPE-------NK--WVTIERIHIVGACNPPT------ 1395 (2695)
T ss_dssp EEEETTTCSCCCSS---SC-----CHHHHHHHHHHHTSSEEC-TTT-------CC--EEEEESEEEEEEECCTT------
T ss_pred EEeccccccccccc---Cc-----hhHHHHHHHHHhcCCEEE-cCC-------Cc--EEEecCEEEEEecCCCc------
Confidence 99999996333211 11 127778888888 33332 111 11 22336788888877421
Q ss_pred hhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHH
Q 007362 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (606)
Q Consensus 473 ~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~ 549 (606)
+.-+..+.|.|++|| .++.++.++.+++.+|+...+..
T Consensus 1396 --------------------------------------~gGR~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1396 --------------------------------------DPGRIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp --------------------------------------STTCCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred --------------------------------------cCCCccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 000223788999999 78999999999999998865443
No 89
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.66 E-value=4.7e-07 Score=92.95 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
++|.++..+.|..++.. ...++|+||+|+|||++++.+++.++ .+
T Consensus 14 ~~gR~~el~~L~~~l~~---------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~ 58 (350)
T 2qen_A 14 IFDREEESRKLEESLEN---------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP--GI 58 (350)
T ss_dssp SCSCHHHHHHHHHHHHH---------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--EE
T ss_pred cCChHHHHHHHHHHHhc---------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--cE
Confidence 68999988888776631 15799999999999999999999875 45
Q ss_pred ecchh
Q 007362 355 IADAT 359 (606)
Q Consensus 355 ~i~~s 359 (606)
.+++.
T Consensus 59 ~~~~~ 63 (350)
T 2qen_A 59 LIDCR 63 (350)
T ss_dssp EEEHH
T ss_pred EEEee
Confidence 55544
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.40 E-value=2.9e-06 Score=109.16 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=52.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
.++++.||+|||||++++.+|+.++.+++.++|++-++ ...+..+|..+.. .+++++|||++++..+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld--------~~~lg~~~~g~~~-----~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD--------YQVLSRLLVGITQ-----IGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC--------HHHHHHHHHHHHH-----HTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC--------hhHhhHHHHHHHh-----cCCEeeehhhhhcChH
Confidence 67999999999999999999999999999999987542 2223334433221 3689999999998877
No 91
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.31 E-value=1.3e-06 Score=90.98 Aligned_cols=164 Identities=14% Similarity=0.114 Sum_probs=101.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC---C-ce--eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN---V-PF--VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~---~-~f--i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
..+||+||.|+||++.++.+++.+. . ++ +.++. ..+. +++.+.+...--.+...||+|||+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~----~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------NTDW----NAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------TCCH----HHHHHHHHHHHHCCSCEEEEEECC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------CCCH----HHHHHHhcCcCCccCCeEEEEECC
Confidence 6899999999999999999998762 1 21 11211 1122 233332222111245679999999
Q ss_pred ch-hhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCC-CcChHHHHHhhhcc
Q 007362 400 DK-ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGA-FVDLEKTISERRQD 477 (606)
Q Consensus 400 D~-l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn-~~~l~~~i~~~~~~ 477 (606)
|. +..+ .+++|++.++. ...+.+||++++ ....+
T Consensus 86 ~~kl~~~--------------~~~aLl~~le~---------------------p~~~~~~il~~~~~~~~~--------- 121 (343)
T 1jr3_D 86 ENGPNAA--------------INEQLLTLTGL---------------------LHDDLLLIVRGNKLSKAQ--------- 121 (343)
T ss_dssp SSCCCTT--------------HHHHHHHHHTT---------------------CBTTEEEEEEESCCCTTT---------
T ss_pred CCCCChH--------------HHHHHHHHHhc---------------------CCCCeEEEEEcCCCChhh---------
Confidence 98 8766 89999999984 112333443322 11000
Q ss_pred cCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHH
Q 007362 478 SSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRL 557 (606)
Q Consensus 478 ~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~ 557 (606)
....+.+.+.+|. .++.|.+++.+++.+.+...
T Consensus 122 -----------------------------------~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~----------- 154 (343)
T 1jr3_D 122 -----------------------------------ENAAWFTALANRS-VQVTCQTPEQAQLPRWVAAR----------- 154 (343)
T ss_dssp -----------------------------------TTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHH-----------
T ss_pred -----------------------------------HhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHH-----------
Confidence 0011334455665 58899999998887776542
Q ss_pred HhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 558 FSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 558 ~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
+...+ +.++++++++|++.. +.+.|.+.+.++++..
T Consensus 155 ~~~~g--~~i~~~a~~~l~~~~---~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 155 AKQLN--LELDDAANQVLCYCY---EGNLLALAQALERLSL 190 (343)
T ss_dssp HHHTT--CEECHHHHHHHHHSS---TTCHHHHHHHHHHHHH
T ss_pred HHHcC--CCCCHHHHHHHHHHh---chHHHHHHHHHHHHHH
Confidence 22234 459999999999873 2345777777776654
No 92
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.30 E-value=9.7e-07 Score=109.15 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=83.9
Q ss_pred HhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhh-------hcCC-----CCCChhhHhhhcccccccccCCcEEEEcCCCC
Q 007362 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHAN-------LKKG-----SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGS 336 (606)
Q Consensus 269 ~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~-------~~~g-----~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGT 336 (606)
..+++ |-|.+++|+.+.+++......-+... ..+. .-....++..+-. .-.+..+.+||+|||||
T Consensus 1017 ~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~--GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1017 SSTGS-MSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGA--GGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSS--SSEETTSEEEEECSTTS
T ss_pred ceeee-cCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhcc--CCCCCCCEEEEEcCCCC
Confidence 44444 78999999999988875543211100 0000 0000111111000 00112345999999999
Q ss_pred HHHHHHHHHHHHh---CCceeecchhh----hhh-------cCCccc----chHHHHHHHHHhhhhhhhhcCCCEEEEcc
Q 007362 337 GKTLLAKTLARHV---NVPFVIADATT----LTQ-------AGYVGE----DVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (606)
Q Consensus 337 GKT~lAralA~~l---~~~fi~i~~s~----l~~-------sg~vG~----~~~~~l~~lf~~a~~~l~~a~~~ILfIDE 398 (606)
|||++|++++.+. +.+-++++... +.. ..|+++ + ++.++.++..++. ..+++||+||
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~-e~~l~~~~~~ar~----~~~~~i~~d~ 1168 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEICDALARS----GAVDVIVVDS 1168 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHHHH----TCCSEEEESC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccch-HHHHHHHHHHHHh----cCCeEEEeCc
Confidence 9999999999766 34444444433 211 245555 3 5667777765543 3789999999
Q ss_pred cchhhhhhhcc-ccccC--cchhHHHHHHHHHHhc
Q 007362 399 VDKITKKAESL-NISRD--VSGEGVQQALLKMLEG 430 (606)
Q Consensus 399 iD~l~~~r~~~-~~~~~--~s~~~vq~~LL~~Leg 430 (606)
++.|.+.+... +.+.. .-..++++++|..|++
T Consensus 1169 ~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1169 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp GGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 99999885421 11211 1124467888888775
No 93
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.29 E-value=2.5e-06 Score=86.91 Aligned_cols=78 Identities=24% Similarity=0.436 Sum_probs=47.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~ 404 (606)
+.+++|+||||||||++|++||+.+.. +..++.+. +.+ .+.. ....-|+++||.. +..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~---~~f-----------~l~~------~~~k~i~l~Ee~~-~~~ 161 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN---ENF-----------PFND------CVDKMVIWWEEGK-MTA 161 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC---SSC-----------TTGG------GSSCSEEEECSCC-EET
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc---ccc-----------cccc------ccccEEEEecccc-chh
Confidence 367999999999999999999997633 22222211 100 0111 1133566666666 444
Q ss_pred hhhccccccCcchhHHHHHHHHHHhceeeecCCC
Q 007362 405 KAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 438 (606)
Q Consensus 405 ~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~ 438 (606)
. +++.+..+++|..+.++.+
T Consensus 162 d--------------~~~~lr~i~~G~~~~id~K 181 (267)
T 1u0j_A 162 K--------------VVESAKAILGGSKVRVDQK 181 (267)
T ss_dssp T--------------THHHHHHHHTTCCEEC---
T ss_pred H--------------HHHHHHHHhCCCcEEEecC
Confidence 4 6677888889877766443
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.28 E-value=3.2e-06 Score=86.82 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=29.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~ 360 (606)
..++|+||+|+|||++++.+++.+...++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 47999999999999999999998876666666553
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.23 E-value=1.3e-06 Score=81.10 Aligned_cols=69 Identities=19% Similarity=0.326 Sum_probs=50.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
..++|+||+|+|||+|++++++.+ +...+.++..++... .+ .....+|+|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------~~---------~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------DA---------AFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------GG---------GGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------HH---------HhCCCEEEEeCcccc
Confidence 689999999999999999999988 555666766654421 00 114579999999987
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHh
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
... .+..|+++++
T Consensus 96 ~~~--------------~~~~l~~li~ 108 (149)
T 2kjq_A 96 GNE--------------EQALLFSIFN 108 (149)
T ss_dssp CSH--------------HHHHHHHHHH
T ss_pred ChH--------------HHHHHHHHHH
Confidence 655 4566666665
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.17 E-value=8e-07 Score=85.11 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=31.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~ 362 (606)
.+++|+||||||||++|+++++.+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 689999999999999999999988 5677777776654
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.16 E-value=1.6e-06 Score=85.07 Aligned_cols=79 Identities=11% Similarity=0.275 Sum_probs=49.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
.++||+||||||||++|.++|+.+....+....+. +.+ .+.. .....||+|||+|...-.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f-----------~l~~------l~~~kIiiLDEad~~~~~ 118 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF-----------WLEP------LTDTKVAMLDDATTTCWT 118 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG-----------GGGG------GTTCSSEEEEEECHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh-----------hhcc------cCCCCEEEEECCCchhHH
Confidence 57999999999999999999999865443221100 000 0000 113459999999953211
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCC
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPE 437 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~ 437 (606)
.+...+..+|||..+.++.
T Consensus 119 -------------~~d~~lrn~ldG~~~~iD~ 137 (212)
T 1tue_A 119 -------------YFDTYMRNALDGNPISIDR 137 (212)
T ss_dssp -------------HHHHHCHHHHHTCCEEEC-
T ss_pred -------------HHHHHHHHHhCCCcccHHH
Confidence 2556788889987665543
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.12 E-value=5.6e-06 Score=107.34 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=92.3
Q ss_pred CcEEEEcCCCCHHHHHHHH-HHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHh----hh----hhhhh----cCCC
Q 007362 326 SNVLLMGPTGSGKTLLAKT-LARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQ----AE----FNVEA----AQQG 392 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAra-lA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~----a~----~~l~~----a~~~ 392 (606)
.+|||+||||||||++++. +++..+.+++.++++.-+.+ ..+...++. .. +.+.. .+..
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 7899999999999977644 55444666777887764422 223233321 11 11111 2335
Q ss_pred EEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHH
Q 007362 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTI 471 (606)
Q Consensus 393 ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i 471 (606)
||||||+++...+. .+. ..+...|.++|| ++... .. +.-.+...++.||+|.|...
T Consensus 1377 VlFiDDiNmp~~D~---yGt-----Q~~ielLrqlld~~g~yd-~~---------~~~~~~i~d~~~vaamnPp~----- 1433 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDK---YGT-----QRVITFIRQMVEKGGFWR-TS---------DHTWIKLDKIQFVGACNPPT----- 1433 (3245)
T ss_dssp EEEETTTTCCCCCT---TSC-----CHHHHHHHHHHHHSEEEE-TT---------TTEEEEESSEEEEEEECCTT-----
T ss_pred EEEecccCCCCccc---ccc-----ccHHHHHHHHHHcCCeEE-CC---------CCeEEEecCeEEEEEcCCCC-----
Confidence 99999999643321 111 127888888998 44432 11 11233457788888766320
Q ss_pred HhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHH
Q 007362 472 SERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (606)
Q Consensus 472 ~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~ 548 (606)
.. -+..+.|.|++||. ++.++.++.+++..|+...+.
T Consensus 1434 ------------~g---------------------------Gr~~l~~Rf~r~F~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1434 ------------DA---------------------------GRVQLTHRFLRHAP-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp ------------ST---------------------------TCCCCCHHHHTTCC-EEECCCCCHHHHHHHHHHHHH
T ss_pred ------------CC---------------------------CCccCCHHHHhhce-EEEeCCCCHHHHHHHHHHHHH
Confidence 00 01237788889985 688999999999999875433
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.08 E-value=1.3e-06 Score=90.57 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=30.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC----Cceeecchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTLT 362 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~----~~fi~i~~s~l~ 362 (606)
.+++|+||||||||+||+++|+.+. .+++.+++.++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 7899999999999999999998664 667767776554
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.92 E-value=8.3e-05 Score=96.68 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=51.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|..+- ..++...|||++++..+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d--------~~~~g~i~~G~~-----~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD--------LQAMSRIFVGLC-----QCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC--------HHHHHHHHHHHH-----HHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC--------HHHHHHHHhhHh-----hcCcEEEehhhhcCCHH
Confidence 56789999999999999999999999999999986442 122333333221 14689999999998877
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.84 E-value=1.1e-05 Score=84.48 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=43.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc--eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP--FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~--fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~ 403 (606)
..++|+||||||||+||..+|...+.+ |+.+...+... .+. .+.+..+..+.+... . .+ +|||||++.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~-~~~-~~le~~l~~i~~~l~----~-~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYN-TDFNVFVDDIARAML----Q-HR-VIVIDSLKNVI 195 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST-TCB-CCHHHHHHHHHHHHH----H-CS-EEEEECCTTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh-hhh-cCHHHHHHHHHHHHh----h-CC-EEEEecccccc
Confidence 567999999999999999999875444 44441122211 111 222444433433332 2 23 99999999886
Q ss_pred hh
Q 007362 404 KK 405 (606)
Q Consensus 404 ~~ 405 (606)
..
T Consensus 196 ~~ 197 (331)
T 2vhj_A 196 GA 197 (331)
T ss_dssp --
T ss_pred cc
Confidence 54
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.46 E-value=0.00056 Score=65.01 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=23.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
.+.|.||+|+|||||++.|+..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48899999999999999999988643
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.43 E-value=0.00013 Score=91.61 Aligned_cols=104 Identities=22% Similarity=0.227 Sum_probs=57.7
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhh---cCCcc-----------cchHHHHHHHHHhhhhh
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ---AGYVG-----------EDVESILYKLLAQAEFN 385 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~---sg~vG-----------~~~~~~l~~lf~~a~~~ 385 (606)
....+++|+||||||||+||.+++... +...+++++..... ....| ...+..+..++ ..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~----~l 1500 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD----AL 1500 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH----HH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHH----HH
Confidence 345899999999999999999998765 33444444442210 00111 11122232222 22
Q ss_pred hhhcCCCEEEEcccchhhhhhhc-cccc-cCcc-hhHHHHHHHHHHhc
Q 007362 386 VEAAQQGMVYIDEVDKITKKAES-LNIS-RDVS-GEGVQQALLKMLEG 430 (606)
Q Consensus 386 l~~a~~~ILfIDEiD~l~~~r~~-~~~~-~~~s-~~~vq~~LL~~Leg 430 (606)
+....+.+|||||++.+.+.++. .+.+ .+.. ..++..++|..|.+
T Consensus 1501 vr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~ 1548 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1548 (2050)
T ss_dssp HHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 33457889999999987764321 1111 1222 23455656655553
No 104
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.27 E-value=0.00015 Score=67.93 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=30.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|+|.|+||+||||+|+.||+.++.+|+..+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 679999999999999999999999999886654
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00018 Score=67.00 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=30.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~ 360 (606)
..|+|.|+||+||||+|+.|++.++.+|+.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 56999999999999999999999998888655543
No 106
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.15 E-value=0.00042 Score=69.09 Aligned_cols=101 Identities=23% Similarity=0.341 Sum_probs=55.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh------hhhcCCcccchHHHHHHHHHhhhhhhhh-cCCCEEEEc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT------LTQAGYVGEDVESILYKLLAQAEFNVEA-AQQGMVYID 397 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~------l~~sg~vG~~~~~~l~~lf~~a~~~l~~-a~~~ILfID 397 (606)
+..+.|.||+|+||||+|+.||+.++.+++..+.-. ....++.-.+ ...+..+.......+.. .....+++|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d-~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTD-PAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTC-HHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchh-hHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 367999999999999999999999988776543321 0122322222 23343444333222211 112346677
Q ss_pred ccchhhhhhhccccccCcch----hHHHHHHHHH
Q 007362 398 EVDKITKKAESLNISRDVSG----EGVQQALLKM 427 (606)
Q Consensus 398 EiD~l~~~r~~~~~~~~~s~----~~vq~~LL~~ 427 (606)
.-+ +....++.+++..+|. ..+...|++.
T Consensus 88 g~~-v~~~ir~~~v~~~~s~va~~~~vr~~l~~~ 120 (233)
T 3r20_A 88 GED-VSSEIRGDAVTGAVSAVSAVPAVRTRLVDI 120 (233)
T ss_dssp TEE-CTTGGGSHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Cee-hhhhhcchHHHHHHHHHhcchHHHHHHHHH
Confidence 666 4555555555544443 3344444444
No 107
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.0003 Score=67.28 Aligned_cols=33 Identities=45% Similarity=0.709 Sum_probs=29.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|+|.|+||+||||+++.||+.++.+|+..+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 689999999999999999999999998876554
No 108
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.08 E-value=0.0013 Score=60.73 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=26.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH-HhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR-HVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~-~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.|++ .++..++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d 35 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH
Confidence 4699999999999999999998 5666555543
No 109
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.06 E-value=0.00031 Score=64.97 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=29.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.+|+|.|++|+||||+|+.||+.++.+|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 68999999999999999999999999887654
No 110
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.06 E-value=0.00034 Score=65.62 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=29.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|+|.|+||+||||+|+.|++.++.+++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDV 35 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCch
Confidence 469999999999999999999999998876553
No 111
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.06 E-value=0.00031 Score=65.56 Aligned_cols=32 Identities=38% Similarity=0.712 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.||+.++.+|+..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 36999999999999999999999998887543
No 112
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.06 E-value=0.00064 Score=73.85 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++|.|+||||||+++.+++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999877
No 113
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.05 E-value=0.00047 Score=66.96 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..+|++|+||||||++|..++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999886544
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.04 E-value=0.00036 Score=64.10 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=29.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|+|.|++|+||||+|+.|++.++.+|+..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 358999999999999999999999988876554
No 115
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.97 E-value=0.00045 Score=64.62 Aligned_cols=32 Identities=38% Similarity=0.612 Sum_probs=28.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+++.|++.++.+++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 67999999999999999999999988876543
No 116
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.94 E-value=0.00048 Score=63.68 Aligned_cols=31 Identities=35% Similarity=0.759 Sum_probs=27.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
..|+|.||+|+||||+++.||..++.+++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 5799999999999999999999998776643
No 117
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.93 E-value=0.003 Score=67.84 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
+..|+|.|+||+||||+|+.|++.++..++..+.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~ 291 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT 291 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccch
Confidence 4679999999999999999999998877665443
No 118
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.91 E-value=0.0005 Score=64.52 Aligned_cols=33 Identities=30% Similarity=0.566 Sum_probs=29.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|+|.|+||+||||+|+.|++.++.+++..+.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~ 38 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSKDA 38 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecHHH
Confidence 579999999999999999999999988876543
No 119
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.87 E-value=0.00075 Score=64.39 Aligned_cols=34 Identities=32% Similarity=0.655 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
+..|+|.|++|+||||+|+.|++.++..++..+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCc
Confidence 3679999999999999999999999887776543
No 120
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.85 E-value=0.00068 Score=64.63 Aligned_cols=32 Identities=38% Similarity=0.640 Sum_probs=28.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 57999999999999999999999998877654
No 121
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.85 E-value=0.00055 Score=64.71 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH-hCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH-VNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~-l~~~fi~i~ 357 (606)
..|+|+|+||+||||+++.||+. ++.+++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 67999999999999999999999 687776544
No 122
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.84 E-value=0.00041 Score=66.30 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..++++||+|+||||++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998655544
No 123
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.83 E-value=0.00065 Score=62.65 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=28.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 46999999999999999999999998877544
No 124
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.81 E-value=0.00062 Score=63.67 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=28.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 56999999999999999999999988776543
No 125
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.81 E-value=0.00069 Score=63.69 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=28.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.||+.++.+++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 67999999999999999999999998877554
No 126
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.80 E-value=0.00065 Score=61.96 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.| +.++.+++.++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence 46899999999999999999 88888877643
No 127
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.77 E-value=0.0034 Score=62.06 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=25.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..++|.||+|+|||.+|.+++..++...+.+-
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 45999999999999999999888765555443
No 128
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.76 E-value=0.00078 Score=67.43 Aligned_cols=33 Identities=39% Similarity=0.486 Sum_probs=29.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
.++|.||||+||||+|+.||+.++.+++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 589999999999999999999999888877654
No 129
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.75 E-value=0.0032 Score=62.21 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.-++++||+|+||||++..++..+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 568999999999999998877665
No 130
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.75 E-value=0.00077 Score=65.37 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.||+.++..++.++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 37 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISAG 37 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 67999999999999999999999998776543
No 131
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.73 E-value=0.00086 Score=64.94 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=28.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 6799999999999999999999999877655
No 132
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.73 E-value=0.00083 Score=63.29 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=28.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 57999999999999999999999987776543
No 133
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.72 E-value=0.00089 Score=61.53 Aligned_cols=31 Identities=35% Similarity=0.605 Sum_probs=27.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4899999999999999999999998887544
No 134
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.71 E-value=0.0008 Score=62.91 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 46999999999999999999999988776543
No 135
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.67 E-value=0.00091 Score=62.43 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 57999999999999999999999988777553
No 136
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.67 E-value=0.00095 Score=64.26 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=27.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4899999999999999999999988777553
No 137
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.66 E-value=0.00081 Score=62.79 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=23.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..|+|.|+||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999999886
No 138
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.63 E-value=0.0011 Score=63.77 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=27.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4899999999999999999999988877553
No 139
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.63 E-value=0.0061 Score=59.25 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA 346 (606)
...++|.||+|+|||||++.++
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4779999999999999999998
No 140
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.62 E-value=0.0031 Score=70.70 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.|+||||||+++.+++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998866
No 141
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.62 E-value=0.0011 Score=64.97 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=28.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.||+.++.+++..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 67999999999999999999999998777653
No 142
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.61 E-value=0.001 Score=64.73 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=28.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.||+.++.+++..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEech
Confidence 57999999999999999999999988777543
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.58 E-value=0.045 Score=59.38 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..|+|.|++|+||||++..||..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 144
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.57 E-value=0.0046 Score=61.83 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=29.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH---hCCceeecchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH---VNVPFVIADATTLT 362 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~---l~~~fi~i~~s~l~ 362 (606)
..|+|.|+||+||||+|+.|++. .+.+++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 56999999999999999999998 67777745544443
No 145
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.56 E-value=0.0013 Score=63.86 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=28.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.||+.++.+++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 37 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTG 37 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEehh
Confidence 56999999999999999999999998877653
No 146
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.56 E-value=0.001 Score=61.96 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=23.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
..|+|.|+||+||||+|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 57999999999999999999999998887
No 147
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.55 E-value=0.0012 Score=62.68 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=28.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 57999999999999999999999988777654
No 148
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.55 E-value=0.0015 Score=60.66 Aligned_cols=32 Identities=34% Similarity=0.574 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..++|.|++|+||||+++.|++.++..++..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d 40 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCc
Confidence 57999999999999999999999887766543
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.47 E-value=0.0011 Score=62.24 Aligned_cols=36 Identities=39% Similarity=0.495 Sum_probs=29.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l 361 (606)
..++|.||+|+||||+++.|+...+...+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 579999999999999999999987666666665544
No 150
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.46 E-value=0.0015 Score=64.87 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=28.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.||||+||||+|+.|++.++.+++.++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 67999999999999999999999988777554
No 151
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.45 E-value=0.0016 Score=62.85 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=27.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
.|+|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998877665
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.45 E-value=0.011 Score=56.51 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||+|+|||++++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999654
No 153
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.43 E-value=0.002 Score=61.49 Aligned_cols=30 Identities=37% Similarity=0.595 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
..++|.||+|+||||+++.|++.++..++.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 679999999999999999999999776654
No 154
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.41 E-value=0.0051 Score=58.66 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..++|+||||+|||++++.++...+...+.++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 679999999999999999999844555555543
No 155
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.40 E-value=0.003 Score=61.21 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..++|+||||+|||++++.++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999985
No 156
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.38 E-value=0.0018 Score=63.04 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=26.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
.|+|.||||+||+|.|+.||+.++.++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 48999999999999999999999887653
No 157
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.37 E-value=0.0036 Score=62.30 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l 361 (606)
+..|+|.|+||+||||+|+.|++.++..++.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3679999999999999999999999765555665544
No 158
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.36 E-value=0.0037 Score=66.08 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhh------cCC------c--ccchHHHHHHHHHhhhhhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ------AGY------V--GEDVESILYKLLAQAEFNVE 387 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~------sg~------v--G~~~~~~l~~lf~~a~~~l~ 387 (606)
...++|+||||+|||+||..++..+ +...++++...... .++ + ....+..+ ......+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l----~~~~~l~~ 136 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL----EIVDELVR 136 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH----HHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH----HHHHHHhh
Confidence 4679999999999999999999775 44555555443110 010 0 11112222 22222222
Q ss_pred hcCCCEEEEcccchhhh
Q 007362 388 AAQQGMVYIDEVDKITK 404 (606)
Q Consensus 388 ~a~~~ILfIDEiD~l~~ 404 (606)
.....+|+||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 34568999999998775
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.35 E-value=0.002 Score=62.09 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=27.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
..|.|.||+|+||||+++.|++.++.+++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 5699999999999999999999998777643
No 160
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.33 E-value=0.0019 Score=63.63 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=26.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
+.|+|.||||+||+|.|+.|++.++.+.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 57889999999999999999999987665
No 161
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.32 E-value=0.0042 Score=63.33 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~ 360 (606)
+..|+|.||||+||||+|+.|++.+...++.+++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 367999999999999999999998844445555533
No 162
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.26 E-value=0.0024 Score=67.45 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=29.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
.+++|+|++|+||||++++||+.++.+|+.+++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a 57 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLS 57 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecc
Confidence 469999999999999999999999988866444
No 163
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.24 E-value=0.0029 Score=58.99 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=31.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l 361 (606)
..|+|.|++|+||||+++.|++.+ +.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 568999999999999999999988 888887776544
No 164
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.24 E-value=0.0023 Score=60.86 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
.|.|.|++|+||||+++.|++ ++.+++..+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 589999999999999999999 8877776554
No 165
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.23 E-value=0.0029 Score=59.89 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=28.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.|.|.|++|+||||+|+.||+.++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999998887554
No 166
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.22 E-value=0.0026 Score=67.74 Aligned_cols=62 Identities=27% Similarity=0.231 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~ 404 (606)
+..++|+||+|+||||++++|+..++..++.+.... . . ....+... -+..++|+||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~---~-------~--~~~~lg~~------~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL---D-------R--LNFELGVA------IDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT---T-------T--HHHHHGGG------TTCSCEEETTCCCSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc---h-------h--HHHHHHHh------cchhHHHHHHHHHHHH
Confidence 368999999999999999999998876655432211 0 0 00011111 1446789999997764
No 167
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.22 E-value=0.0028 Score=59.18 Aligned_cols=31 Identities=29% Similarity=0.254 Sum_probs=27.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh---CCceeecc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~ 357 (606)
.|+|.|++|+||||+|+.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999988 78877654
No 168
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.22 E-value=0.0024 Score=62.24 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=26.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
.|+|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998766554
No 169
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.21 E-value=0.0026 Score=59.95 Aligned_cols=29 Identities=14% Similarity=0.480 Sum_probs=26.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
.|+|.|++|+||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48999999999999999999999887664
No 170
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.19 E-value=0.0017 Score=60.49 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=22.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.|+|.|+||+||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999885
No 171
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.18 E-value=0.0023 Score=66.86 Aligned_cols=35 Identities=37% Similarity=0.571 Sum_probs=31.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~ 360 (606)
..|+|.||+|+|||++|+.||+.++..++.+|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 47999999999999999999999998888877653
No 172
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.10 E-value=0.074 Score=52.68 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=24.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi 354 (606)
.+|++.|+||+|||+++-.+|..+ |...+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 679999999999999999998776 55544
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.07 E-value=0.0033 Score=63.12 Aligned_cols=33 Identities=36% Similarity=0.568 Sum_probs=29.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|+|.|++|+||||+++.||+.++.+|+..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~ 81 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 81 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence 679999999999999999999999998876543
No 174
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=96.06 E-value=0.019 Score=49.24 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=55.6
Q ss_pred CcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHhc
Q 007362 533 ALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEV 604 (606)
Q Consensus 533 ~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~~ 604 (606)
.++++|...|++++ |..+..+.......++.++++++..|.+. |+.+-|+|+|.+.|.+++-.+..++
T Consensus 2 GYt~~EK~~IAk~~---LiPkql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i 69 (94)
T 1qzm_A 2 GYTEDEKLNIAKRH---LLPKQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQL 69 (94)
T ss_dssp CCCHHHHHHHHHHT---HHHHHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---ccHHHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHH
Confidence 57899999999986 55555555555566789999999999987 8899999999999999988876553
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.06 E-value=0.0041 Score=59.36 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=28.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l 361 (606)
..|.|.||+|+||||++++|++.+ +...+.++...+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 679999999999999999999988 444234555444
No 176
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.03 E-value=0.0031 Score=59.52 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
+..|.|.|++|+||||+++.|++. +.+++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 367999999999999999999998 77776544
No 177
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.02 E-value=0.003 Score=60.21 Aligned_cols=31 Identities=45% Similarity=0.547 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|.|.|++|+||||+++.|++ ++.+++..+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 3589999999999999999998 787776443
No 178
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.99 E-value=0.0025 Score=60.74 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
+..|+|.|++|+||||+|+.|++.++.+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~ 40 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVE 40 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 3679999999999999999999988654443
No 179
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.96 E-value=0.0062 Score=64.05 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhc---CCcccchH-------HHHHHHHHhhhhhhhhcCC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVE-------SILYKLLAQAEFNVEAAQQ 391 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~s---g~vG~~~~-------~~l~~lf~~a~~~l~~a~~ 391 (606)
...++|+||||+|||++|..++..+ +...++++....... ...|.+.. ..+.+++..+...+.....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999988654 344444443321100 00110000 0011122222222223357
Q ss_pred CEEEEcccchhhh
Q 007362 392 GMVYIDEVDKITK 404 (606)
Q Consensus 392 ~ILfIDEiD~l~~ 404 (606)
.+||||++..+..
T Consensus 141 ~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 141 DIIVIDSVAALVP 153 (349)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcChHhhcc
Confidence 8999999998874
No 180
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.94 E-value=0.0045 Score=58.08 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh---CCceeec
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l---~~~fi~i 356 (606)
|+|.|++|+||||+++.|++.+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 8999999999999999999998 8877643
No 181
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.93 E-value=0.0034 Score=59.37 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-CCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-~~~fi~i 356 (606)
..|+|.|++|+||||+++.|++.+ +.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 579999999999999999999998 4666544
No 182
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.91 E-value=0.026 Score=61.10 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.|++|+||||++..||..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 183
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.89 E-value=0.0044 Score=59.61 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=28.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|.|+|++|+||||+++.|++.++.+++..|.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~ 45 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDR 45 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECcH
Confidence 468999999999999999999998988876543
No 184
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.82 E-value=0.014 Score=55.95 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=28.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC----Cceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~----~~fi~i~~s~l 361 (606)
..|+|.|++|+||||+++.|++.++ .+++.++...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 5789999999999999999999874 44666665443
No 185
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.82 E-value=0.0032 Score=59.98 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
..|+|.|++|+||||+|+.|++.++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999875433
No 186
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.78 E-value=0.0032 Score=66.10 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=31.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~ 360 (606)
..|+|.||+|+|||+||..||+.++.+++..|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 47999999999999999999999998888777654
No 187
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.77 E-value=0.0057 Score=58.73 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=28.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|.|.|++|+|||++++.|++.++.+++..+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~ 36 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTGA 36 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCCh
Confidence 579999999999999999999999988775543
No 188
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.76 E-value=0.0059 Score=59.84 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
...|.|.|++|+||||+++.|++.++.+++..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 467999999999999999999999998776543
No 189
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.75 E-value=0.0057 Score=60.66 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=25.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
..|.|.|++|+||||+|+.|++.++.++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 5799999999999999999999998774
No 190
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.74 E-value=0.0062 Score=59.99 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
+..++|.||+|+||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 367999999999999999999999877554
No 191
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.73 E-value=0.0053 Score=58.13 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
..|+|.|+||+||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 569999999999999999999998763
No 192
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.72 E-value=0.0052 Score=59.19 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|.|.|++|+||||+++.|++ ++.+++..+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 5699999999999999999998 887776544
No 193
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.59 E-value=0.0052 Score=62.10 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-CCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-~~~fi~i~ 357 (606)
..|+|.|+||+||||+|+.|++.+ +..++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 469999999999999999999974 66666555
No 194
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.58 E-value=0.017 Score=65.03 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 679999999999999988776554
No 195
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.57 E-value=0.0074 Score=60.06 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=27.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
..|.|.||+|+||||+++.||+.++..++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 579999999999999999999999887663
No 196
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.57 E-value=0.013 Score=60.49 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...++|+||||+|||++|..++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4679999999999999999999765
No 197
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.47 E-value=0.022 Score=60.10 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecch
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~ 358 (606)
....++|+|+||+|||++|..++..+ +...++++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34679999999999999999988764 455665655
No 198
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.45 E-value=0.026 Score=54.52 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||||+|||++|..++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999988877543
No 199
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.42 E-value=0.01 Score=55.57 Aligned_cols=36 Identities=33% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC---Cceeecchhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATT 360 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~---~~fi~i~~s~ 360 (606)
...|+|.|++|+||||+++.|++.++ ..+..++...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 36799999999999999999999873 3344444433
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.42 E-value=0.017 Score=72.88 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=48.1
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhc---CCcccch----------HHHHHHHHHhhhhhh
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDV----------ESILYKLLAQAEFNV 386 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~s---g~vG~~~----------~~~l~~lf~~a~~~l 386 (606)
....+++|+||||||||++|..++.+. +.+.+++++.+..+. ...|.+. ......+... ..
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~---l~ 1155 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA---LA 1155 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH---HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHH---HH
Confidence 346889999999999999999988654 555555555542211 0011000 1111111111 11
Q ss_pred hhcCCCEEEEcccchhhhhhh
Q 007362 387 EAAQQGMVYIDEVDKITKKAE 407 (606)
Q Consensus 387 ~~a~~~ILfIDEiD~l~~~r~ 407 (606)
....+.+|+|||+..+.+..+
T Consensus 1156 ~~~~~dlvVIDsl~~L~~~~e 1176 (2050)
T 3cmu_A 1156 RSGAVDVIVVDSVAALTPKAE 1176 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHH
T ss_pred HhCCCCEEEECCccccccccc
Confidence 223678999999999866543
No 201
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.40 E-value=0.0074 Score=62.65 Aligned_cols=36 Identities=39% Similarity=0.620 Sum_probs=31.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l 361 (606)
..++|.||+|+|||+||..||+.++..++..|...+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 568999999999999999999999988887776544
No 202
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.38 E-value=0.012 Score=61.71 Aligned_cols=26 Identities=46% Similarity=0.510 Sum_probs=23.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
....+.|+||+|+|||+|++.++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999886
No 203
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.38 E-value=0.0098 Score=57.39 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=28.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
..|.|.|++|+|||++++.||+.++.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 579999999999999999999999999985
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.35 E-value=0.0061 Score=58.20 Aligned_cols=32 Identities=41% Similarity=0.521 Sum_probs=26.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-CCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-~~~fi~i~ 357 (606)
..|.|.|++|+||||+++.|++.+ +..++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 568999999999999999999987 56555444
No 205
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.35 E-value=0.0087 Score=57.21 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++|.||||+||||+++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 6799999999999999999999884
No 206
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.30 E-value=0.076 Score=51.41 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh---------hhhhc----------CCcccc-----hHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT---------TLTQA----------GYVGED-----VESILYK 377 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s---------~l~~s----------g~vG~~-----~~~~l~~ 377 (606)
+..|++++++|.|||++|-.+|-.. |..+..+... .+... +|.... +......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3689999999999999999988554 4444333111 11111 121111 1233344
Q ss_pred HHHhhhhhhhhcCCCEEEEcccchh
Q 007362 378 LLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 378 lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
.+..+...+.....-+|+|||+..+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~a 132 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYM 132 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 5555555555566789999999753
No 207
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.26 E-value=0.021 Score=60.29 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 579999999999999999999876
No 208
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.22 E-value=0.0089 Score=62.21 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=30.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l 361 (606)
..|+|.||+|+|||+||..||+.++..++..|...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 468999999999999999999999887777766544
No 209
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.14 E-value=0.0098 Score=62.45 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=28.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
..|+|.||+|+|||++|+.||+.++..++..|.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4689999999999999999999998766665543
No 210
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.11 E-value=0.016 Score=61.27 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=44.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhh------cCCc--------ccchHHHHHHHHHhhhhhh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ------AGYV--------GEDVESILYKLLAQAEFNV 386 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~------sg~v--------G~~~~~~l~~lf~~a~~~l 386 (606)
....++|+|+||+|||++|..++..+ +.+.++++...... .++. ....+. ++......+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~----~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ----ALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH----HHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHH----HHHHHHHHH
Confidence 34679999999999999999888654 44555555432110 0110 011122 222222222
Q ss_pred hhcCCCEEEEcccchhhh
Q 007362 387 EAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 387 ~~a~~~ILfIDEiD~l~~ 404 (606)
......+||||.+..+..
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 223568999999998864
No 211
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.09 E-value=0.01 Score=60.13 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
+..|.|.|++|+||||+|+.|+ .++.+++..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 3579999999999999999999 5787776544
No 212
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.07 E-value=0.011 Score=56.33 Aligned_cols=30 Identities=40% Similarity=0.483 Sum_probs=25.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC--Cceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~--~~fi~ 355 (606)
..+.|.||+|+||||+++.|+..++ ..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 5689999999999999999999987 44443
No 213
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.04 E-value=0.026 Score=53.28 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=20.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
.++++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999999877754
No 214
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.04 E-value=0.013 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
..++|.||+|+||||+++.|+...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35899999999999999999986643
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.00 E-value=0.013 Score=54.93 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++|.||+|+|||||++.|++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999998763
No 216
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.91 E-value=0.011 Score=55.77 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=22.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999999876
No 217
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.85 E-value=0.013 Score=62.90 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=29.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
..|+|.||+|+|||+||..||+.++..++..|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM 36 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence 4689999999999999999999998777666553
No 218
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.84 E-value=0.015 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 568999999999999999999986
No 219
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.84 E-value=0.012 Score=56.50 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
...++|.||+|+||||+++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 36799999999999999999998874
No 220
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.76 E-value=0.027 Score=58.82 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
...++|+||||+|||++|..+|..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999986
No 221
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.75 E-value=0.016 Score=60.42 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-----CCceeecchhhhhh------cCCc--------ccchHHHHHHHHHhhhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQ------AGYV--------GEDVESILYKLLAQAEFNV 386 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~------sg~v--------G~~~~~~l~~lf~~a~~~l 386 (606)
..++|+||||+|||+||-.++..+ +...+++++..-.. .++. ....+.....+.+... .+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~-~i 107 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD-AI 107 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH-TC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH-Hh
Confidence 358999999999999987766443 44556666542110 0110 0122222012221110 02
Q ss_pred hhcCCCEEEEcccchhhh
Q 007362 387 EAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 387 ~~a~~~ILfIDEiD~l~~ 404 (606)
....+.+|+||-|..+..
T Consensus 108 ~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp CTTCCEEEEEECSTTCBC
T ss_pred hccCceEEEEeccccccc
Confidence 334678999999998864
No 222
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.71 E-value=0.042 Score=60.74 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
+..|+|.|.||+||||+|+.||+.++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 45799999999999999999999885433
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.67 E-value=0.056 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.||+|+||||++..||..+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4679999999999999999999876
No 224
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.67 E-value=0.017 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998873
No 225
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.64 E-value=0.029 Score=58.34 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++|.||+|+||||++++|+..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 6899999999999999999998873
No 226
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.57 E-value=0.058 Score=58.60 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
+..|+|.|.||+||||+++.|++.++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 36799999999999999999999875433
No 227
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.56 E-value=0.018 Score=55.24 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.||+|+|||||+++|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6789999999999999999999874
No 228
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.46 E-value=0.028 Score=61.39 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|+|++|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 568999999999999999988654
No 229
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.42 E-value=0.039 Score=59.08 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
....++|+||||+|||+|++.++-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3578999999999999999977643
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.40 E-value=0.037 Score=57.70 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+..++|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999876
No 231
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.39 E-value=0.054 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.-.+++||.|+||||.+-.+++.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 568999999999999888877665
No 232
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.31 E-value=0.035 Score=57.06 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..+.|.||+|+||||+++.||..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999876
No 233
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.30 E-value=0.016 Score=56.44 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=32.4
Q ss_pred cccccCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhh
Q 007362 320 NVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (606)
Q Consensus 320 ~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~ 362 (606)
-+......|+|.||+|+|||++|..|++... +++..|...+.
T Consensus 29 ~v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~ 70 (205)
T 2qmh_A 29 LVDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVY 70 (205)
T ss_dssp EEEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEE
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhee
Confidence 3444457899999999999999999998876 67666655443
No 234
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.23 E-value=0.031 Score=69.63 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=48.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhh---cCCcccc-------hHHHHHHHHHhhhhhhhhcC
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ---AGYVGED-------VESILYKLLAQAEFNVEAAQ 390 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~---sg~vG~~-------~~~~l~~lf~~a~~~l~~a~ 390 (606)
+...++|+||||+|||+||..+|..+ +.++++++...... +...|.+ ....+.+++......+....
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~ 810 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 810 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccC
Confidence 45789999999999999999998765 34555555442110 0001100 00112233443333333446
Q ss_pred CCEEEEcccchhhh
Q 007362 391 QGMVYIDEVDKITK 404 (606)
Q Consensus 391 ~~ILfIDEiD~l~~ 404 (606)
..+||||++..+..
T Consensus 811 ~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 811 VDVIVVDSVAALTP 824 (1706)
T ss_dssp CSEEEESCSTTCCC
T ss_pred CCEEEEechhhhcc
Confidence 78999999998874
No 235
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.23 E-value=0.025 Score=55.64 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=28.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
..|.|.|++|||||++|+.||+.++.+|+.-
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~ 45 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDD 45 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcH
Confidence 5799999999999999999999999999763
No 236
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.22 E-value=0.028 Score=57.72 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
....++|+|+||+|||++|..+|..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999875
No 237
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.21 E-value=0.044 Score=53.02 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=24.6
Q ss_pred CcEEEEcCCCCHHH-HHHHHHHHHh--CCceeecc
Q 007362 326 SNVLLMGPTGSGKT-LLAKTLARHV--NVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT-~lAralA~~l--~~~fi~i~ 357 (606)
.-++++||.|+||| .|.+++.+.. +...+.+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 56899999999999 8889888765 44444443
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.16 E-value=0.026 Score=53.97 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.||+|+|||||++.|.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6799999999999999999998763
No 239
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.13 E-value=0.029 Score=55.74 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=27.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
..+-|.|+||+||||+|+.|++.++.+++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3478999999999999999999999887754
No 240
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.05 E-value=0.014 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.|+|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999884
No 241
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.02 E-value=0.041 Score=52.45 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i 356 (606)
..+.|.|++|+||||+++.|+..+ +.+++.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 579999999999999999999876 4444443
No 242
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.00 E-value=0.032 Score=63.13 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=31.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l 361 (606)
..|+|.|.+|+||||+|++|++.+ +.+++.++...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 569999999999999999999999 889888875543
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.99 E-value=0.033 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+.|+|.||+|+|||||++.|.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999987763
No 244
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.96 E-value=0.85 Score=49.16 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh----CCceeecch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADA 358 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l----~~~fi~i~~ 358 (606)
+..|+|.|++|+||||++-.||..+ +.....+++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4689999999999999999999766 444444443
No 245
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.93 E-value=0.068 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..|.|.|++|+||||+|+.|++.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6789999999999999999999884
No 246
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.93 E-value=0.14 Score=50.22 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~ 357 (606)
.-.+++|+.|+||||.+-.++..+ +...+.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 456799999999999988777654 44444443
No 247
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.92 E-value=0.099 Score=53.57 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.|++|+||||++..||..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999876
No 248
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.91 E-value=0.089 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.|++|+||||++..||..+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999876
No 249
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.72 E-value=0.032 Score=54.89 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
..+.|.||+|+||||+++.|+..++..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 568999999999999999999988654
No 250
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.69 E-value=0.13 Score=55.70 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~ 347 (606)
....++.|+||||||++...+++
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 36789999999999999987764
No 251
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.68 E-value=0.037 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.||+|+|||||+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999999874
No 252
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.61 E-value=0.034 Score=53.11 Aligned_cols=24 Identities=50% Similarity=0.533 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+||||+++.|+..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999854
No 253
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.53 E-value=0.21 Score=54.99 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~ 358 (606)
+..|+|.|++|+||||++..||..+ +.....+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4689999999999999999999766 444444443
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.48 E-value=0.042 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 679999999999999999999977
No 255
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.44 E-value=0.042 Score=53.15 Aligned_cols=26 Identities=19% Similarity=0.524 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
...++|.||+|+|||||+++|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 36799999999999999999998864
No 256
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.42 E-value=0.17 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHH--HHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKT--LARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAra--lA~~l 349 (606)
..++|.||+|+|||||++. ++..+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999 45554
No 257
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.42 E-value=0.19 Score=48.31 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~ 347 (606)
...++|+|+||+|||++|..+|.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36799999999999999987653
No 258
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.36 E-value=0.042 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=23.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.-|+|.|++|+||||+++.|++.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999986
No 259
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.25 E-value=0.11 Score=54.94 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.||+|+||||+++.||..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4679999999999999999999876
No 260
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.19 E-value=0.023 Score=58.05 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..|.|.||+|+||||+|+.|++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5699999999999999999999875
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.10 E-value=0.05 Score=50.52 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||.|+||||+.++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999999987
No 262
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.88 E-value=0.038 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHH-HHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLA-RHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA-~~l 349 (606)
..+.|.||+|+||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 578999999999999999999 876
No 263
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.87 E-value=0.55 Score=52.47 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-------CCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-------NVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-------~~~fi~i~~s 359 (606)
.|+|+.|.+|+|||++.+.|...+ .+.|+.+|..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 799999999999999999876544 1346666655
No 264
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.83 E-value=0.066 Score=59.16 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=24.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
..|+|.|.+|+||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999975
No 265
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.68 E-value=0.074 Score=49.26 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.1
Q ss_pred ccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 321 v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+...+...+|+||.|+|||+++++|+-.++
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 334456789999999999999999998875
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.67 E-value=0.063 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.||+|+|||||.++|+..+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 6799999999999999999999874
No 267
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.62 E-value=0.11 Score=57.01 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.||+|+||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4679999999999999999999876
No 268
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.57 E-value=0.066 Score=54.85 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.||+|+||||+++.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999875
No 269
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.53 E-value=0.064 Score=51.24 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+||||+++.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 358999999999999999999886
No 270
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.52 E-value=0.062 Score=53.95 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=22.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||+|+||||+.++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 679999999999999999999876
No 271
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.50 E-value=0.066 Score=49.77 Aligned_cols=20 Identities=50% Similarity=0.733 Sum_probs=18.1
Q ss_pred CcEEEEcCCCCHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTL 345 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAral 345 (606)
..+.|.||+|+||||+++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999963
No 272
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.45 E-value=0.069 Score=55.12 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=23.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.||+|+|||||+++|++.+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhhhcC
Confidence 6789999999999999999999883
No 273
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.36 E-value=0.064 Score=60.08 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=30.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC----Cceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~----~~fi~i~~s~l 361 (606)
..|+|.|++|+||||+|++|++.++ .+++.++...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 5799999999999999999999985 67777765543
No 274
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.18 E-value=0.07 Score=55.08 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+..+.|.||+|+|||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 36789999999999999999999873
No 275
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.18 E-value=0.081 Score=54.99 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+..+.|.||+|+||||+++.|+..+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999999885
No 276
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.11 E-value=0.08 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...++|+||+|+|||||++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999654
No 277
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.10 E-value=0.1 Score=58.96 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCHHHHHH-HHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLA-KTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lA-ralA~~l 349 (606)
.-.|+.||||||||+++ .+|+..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999754 4455444
No 278
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.99 E-value=0.084 Score=53.19 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||||+||||+++.++..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999765
No 279
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.85 E-value=0.091 Score=54.04 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.4
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+..+.|.||+|+||||+++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 280
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.79 E-value=0.034 Score=55.23 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=25.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-CCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-~~~fi 354 (606)
..|+|.|++|+||||+++.|++.+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 679999999999999999999998 44444
No 281
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.74 E-value=0.26 Score=54.79 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC---Cceeecchhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATT 360 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~---~~fi~i~~s~ 360 (606)
..|+|.|++|+||||+|+.|++.++ .++..++...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 5699999999999999999999874 3455555443
No 282
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.53 E-value=0.089 Score=51.42 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..|+|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999999983
No 283
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.52 E-value=0.084 Score=58.86 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.|++|+|||||+++|++.++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 6799999999999999999999984
No 284
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.51 E-value=0.27 Score=58.49 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
++|.++.++.|.+.+... . .....|.|+|+.|+|||+||+.+++.
T Consensus 126 ~vgR~~~~~~l~~~l~~~--------~---------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL--------N---------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT--------T---------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHHhhc--------c---------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 689999999988877310 0 01256899999999999999988754
No 285
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.48 E-value=0.11 Score=50.84 Aligned_cols=32 Identities=34% Similarity=0.375 Sum_probs=28.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|-|+|..||||||+++.+++ +|.+++..|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 5689999999999999999998 8998887665
No 286
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.31 E-value=0.078 Score=50.61 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=27.1
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecchhh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~ 360 (606)
+|++|++|+|||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999977 77777766643
No 287
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.25 E-value=0.11 Score=53.10 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+..++|.||+|+||||++..||..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999766
No 288
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.22 E-value=0.084 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.|++|+|||||++.|++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 289
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.17 E-value=0.12 Score=54.05 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
..+.|.||+|+|||||+++|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 579999999999999999999998644
No 290
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.08 E-value=0.11 Score=50.44 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.-|+|.|++|+||||+++.|++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999884
No 291
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.06 E-value=0.17 Score=55.94 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHH
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~ 347 (606)
++|.+..++.|..++... . .....|+|+|++|+|||+||+.+++
T Consensus 126 ~vGR~~~l~~L~~~L~~~--------~---------------------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKL--------K---------------------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHHTTS--------T---------------------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHHhcc--------c---------------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 689999999887777310 0 0125799999999999999998864
No 292
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.05 E-value=0.5 Score=54.65 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..+++.||+|+|||++...+..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999997666643
No 293
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.92 E-value=0.11 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=22.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||+|+||||+.++|++.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 679999999999999999999876
No 294
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.72 E-value=0.21 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..-++|.|+||+|||++|..+|..+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999988654
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.69 E-value=0.15 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.|++|+||||++..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999876
No 296
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.63 E-value=0.16 Score=54.72 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++|.||+|+||||+.++++..++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5689999999999999999999884
No 297
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.61 E-value=0.34 Score=52.25 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+..++|.|++|+||||++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999877
No 298
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.59 E-value=0.24 Score=54.70 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHH
Q 007362 276 IGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 276 vGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~ 347 (606)
+|.+..++.|...+... ... ....|.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-------~~~---------------------~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-------CDL---------------------DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-------TTS---------------------SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-------cCC---------------------CceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999988877411 000 126799999999999999999997
No 299
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.47 E-value=0.11 Score=51.29 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=19.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.-|+|.|++|+||||+++.|++.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999999873
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.39 E-value=0.1 Score=50.62 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..+.|.||+|+|||||.++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999976
No 301
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.30 E-value=0.12 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++|+..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999766
No 302
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.30 E-value=0.12 Score=50.91 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3678999999999999999999776
No 303
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.29 E-value=0.083 Score=56.55 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||+|+|||+|++.|++.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 679999999999999999999876
No 304
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=90.28 E-value=0.52 Score=50.35 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..++|.+|+|+|||.++-.++..++...+.+-
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~ 140 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence 45999999999999999888877765544433
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.01 E-value=0.16 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.|++|+||||+++.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 568999999999999999999875
No 306
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.00 E-value=0.12 Score=54.25 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=23.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++|.||+|+||||++++|+..+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999998774
No 307
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.97 E-value=0.14 Score=50.71 Aligned_cols=24 Identities=38% Similarity=0.713 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999876
No 308
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.96 E-value=0.17 Score=55.82 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.+++|.||+|+||||+.++++..+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999998873
No 309
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.94 E-value=0.27 Score=45.38 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998864
No 310
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.92 E-value=0.16 Score=49.58 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=24.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
.-|+|.|++|+||||+++.|++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999975
No 311
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.89 E-value=0.18 Score=50.05 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=22.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.-|+|.|++|+||||+++.|++.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999887
No 312
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.82 E-value=0.14 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999999865
No 313
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.74 E-value=0.16 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.++.|.||+|+|||||.++|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999876
No 314
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.69 E-value=0.26 Score=55.54 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999877665543
No 315
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=89.63 E-value=0.51 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=18.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
.++++.+|+|+|||+++-..+-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57999999999999987654433
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.53 E-value=0.18 Score=50.14 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
...+.|.||+|+|||||.++|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999986
No 317
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.50 E-value=0.17 Score=48.20 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=27.2
Q ss_pred ccccCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 321 v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
+..-...+||.|++|+||||+|..+.+. +..++.=|
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD 47 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR-GHQLVCDD 47 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence 3344578999999999999999998873 55554433
No 318
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.49 E-value=0.16 Score=49.56 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||.|+|||||.++|+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678899999999999999999765
No 319
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.44 E-value=0.2 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCHHHH-HHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTL-LAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~-lAralA~~l 349 (606)
...+++||.|+|||| |.+.+.+..
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~ 53 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGI 53 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567999999999999 556654443
No 320
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.39 E-value=0.16 Score=50.75 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999766
No 321
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.34 E-value=0.16 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999999876
No 322
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.26 E-value=0.19 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=22.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.-|+|.|++|+||||+++.|++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999999987
No 323
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.23 E-value=0.19 Score=47.02 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 568999999999999999998754
No 324
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.18 E-value=0.17 Score=50.02 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999865
No 325
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.17 E-value=0.19 Score=50.46 Aligned_cols=25 Identities=44% Similarity=0.608 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999863
No 326
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.14 E-value=0.2 Score=46.93 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.|++|+|||+|.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 569999999999999999998753
No 327
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.09 E-value=0.17 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||.|+|||||.++|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999876
No 328
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.08 E-value=0.21 Score=49.15 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
.-|+|.|++|+||||+++.|++.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57999999999999999999998743
No 329
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.06 E-value=0.17 Score=50.24 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999999876
No 330
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.01 E-value=1.1 Score=54.97 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||+++|.+.+
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CcEEEEEecCCCcHHHHHHHhcccc
Confidence 4678999999999999999999876
No 331
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.96 E-value=0.99 Score=51.15 Aligned_cols=20 Identities=55% Similarity=0.723 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKT 344 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAra 344 (606)
..++++.+|+|+|||+++..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHH
Confidence 37899999999999999844
No 332
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.94 E-value=0.16 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999875
No 333
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.87 E-value=0.18 Score=50.80 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3678999999999999999999765
No 334
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.86 E-value=0.18 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++|+..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 578899999999999999999876
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.83 E-value=0.24 Score=46.87 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...|+|.|++|+|||+|...+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 336
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.77 E-value=0.18 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3678999999999999999999866
No 337
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.70 E-value=0.19 Score=53.07 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++||...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 568899999999999999999865
No 338
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.70 E-value=0.19 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++|+..+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 578899999999999999999876
No 339
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.70 E-value=0.19 Score=50.36 Aligned_cols=25 Identities=44% Similarity=0.594 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3678999999999999999999865
No 340
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.69 E-value=0.22 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|++.|++|+|||+|...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998854
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.65 E-value=0.19 Score=50.69 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++|+..+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 678899999999999999999876
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.49 E-value=0.19 Score=50.89 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578899999999999999999876
No 343
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.45 E-value=0.2 Score=50.17 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||.|+|||||.++|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999865
No 344
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.39 E-value=0.2 Score=50.26 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||.|+|||||.++|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578899999999999999999765
No 345
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.31 E-value=0.7 Score=48.14 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=19.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l 349 (606)
++++..|+|+|||+.+-+++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999988876554
No 346
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.31 E-value=0.19 Score=54.27 Aligned_cols=25 Identities=48% Similarity=0.660 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..|+|.|++|+||||++..||..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 347
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.17 E-value=0.26 Score=43.85 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998864
No 348
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.16 E-value=0.23 Score=52.18 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++||...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 578899999999999999999765
No 349
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.12 E-value=0.24 Score=52.09 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++||..+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578899999999999999999765
No 350
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.12 E-value=0.35 Score=50.77 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecc
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~ 357 (606)
...|+++.||+|+|||++++.++..+ +..++.+|
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 35899999999999999999988654 44444444
No 351
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.09 E-value=0.21 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999875
No 352
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.01 E-value=0.25 Score=43.75 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998864
No 353
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.97 E-value=0.27 Score=43.39 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 354
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=87.97 E-value=0.57 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
...++|.||.|+||||+.|.++..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 357999999999999999999854
No 355
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.96 E-value=0.23 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++||...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 578999999999999999999865
No 356
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.88 E-value=0.26 Score=51.98 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++||..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 578899999999999999999865
No 357
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.85 E-value=0.26 Score=52.04 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++||..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 568899999999999999999865
No 358
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.84 E-value=0.35 Score=43.67 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~ 347 (606)
...|+|.|++|+|||+|...+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999875
No 359
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.82 E-value=0.4 Score=55.75 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=19.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999877666543
No 360
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.75 E-value=0.53 Score=44.54 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++|.|.+|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998763
No 361
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.69 E-value=0.27 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++||..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3578999999999999999999865
No 362
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.64 E-value=0.27 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++||..+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 578899999999999999999865
No 363
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.60 E-value=0.3 Score=43.24 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999988753
No 364
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=87.57 E-value=0.66 Score=49.59 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLA 342 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lA 342 (606)
.++|+.||+|+|||+++
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 67999999999999986
No 365
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.38 E-value=0.27 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||+|+|||||+|+|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 679999999999999999999865
No 366
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.37 E-value=0.45 Score=58.31 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.|++|+|||||+++|.+.+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 4678899999999999999999876
No 367
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.34 E-value=0.27 Score=43.76 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998754
No 368
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.33 E-value=0.23 Score=49.93 Aligned_cols=25 Identities=36% Similarity=0.735 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999875
No 369
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.08 E-value=0.33 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=21.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l 349 (606)
=|.|.|+.|+||||.++.|++.+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999999999988
No 370
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.05 E-value=0.23 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++||..+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 578899999999999999999765
No 371
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.03 E-value=0.33 Score=43.24 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..|+|.|++|+|||+|.+.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999987643
No 372
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.01 E-value=0.31 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..++|.|++|+|||+|.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999875
No 373
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.97 E-value=0.19 Score=51.75 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||+++|+..+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3679999999999999999999866
No 374
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.87 E-value=0.27 Score=45.42 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999875
No 375
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.79 E-value=0.39 Score=43.76 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.0
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.-.+|+||.|+|||++..+|.-.+
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334678999999999999999998766
No 376
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=86.74 E-value=1.2 Score=51.66 Aligned_cols=21 Identities=48% Similarity=0.613 Sum_probs=18.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA 346 (606)
.++|+.||+|+|||.++-..+
T Consensus 390 ~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999986544
No 377
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=86.69 E-value=0.44 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..|.|.|+||+||||++..|+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 378
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.69 E-value=0.35 Score=43.11 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5699999999999999999875
No 379
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.66 E-value=0.35 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 380
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.65 E-value=0.35 Score=43.58 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999988753
No 381
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.57 E-value=0.36 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998754
No 382
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=86.55 E-value=0.39 Score=46.62 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=24.7
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.++..|+|+|.||+||+++|+.+.+.++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcC
Confidence 3557899999999999999999998775
No 383
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.49 E-value=0.35 Score=43.44 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|.+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5799999999999999998864
No 384
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.39 E-value=0.38 Score=42.75 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999875
No 385
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.36 E-value=0.2 Score=48.73 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..+.|.|+.|+||||+++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999987
No 386
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.33 E-value=0.34 Score=51.61 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3679999999999999999999754
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.28 E-value=0.38 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998863
No 388
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.26 E-value=0.39 Score=42.63 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999998763
No 389
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.17 E-value=0.31 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||.|+|||||.++|+..+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3578899999999999999999875
No 390
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.15 E-value=0.37 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 391
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.10 E-value=0.43 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..-++|.|+||+|||++|..+|..+
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999988654
No 392
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.05 E-value=0.39 Score=42.79 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA 346 (606)
..|+|.|++|+|||+|.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 469999999999999999875
No 393
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.98 E-value=0.38 Score=42.81 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5699999999999999999875
No 394
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=85.98 E-value=0.39 Score=47.79 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=24.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
.|.|+|.+|+||||+|+.|+..++.+.+
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 4889999999999999999998876653
No 395
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.97 E-value=0.39 Score=42.94 Aligned_cols=21 Identities=43% Similarity=0.688 Sum_probs=19.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA 346 (606)
..|+|.|++|+|||+|...+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999986
No 396
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.95 E-value=0.28 Score=45.22 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
...|+|.|++|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988644
No 397
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.93 E-value=0.4 Score=52.72 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||+|+|||||++.++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 779999999999999999999765
No 398
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.92 E-value=0.42 Score=48.67 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+..+.|.|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 399
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.91 E-value=0.42 Score=42.49 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|+|.|++|+|||+|...+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999987643
No 400
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=85.86 E-value=1.3 Score=50.42 Aligned_cols=19 Identities=53% Similarity=0.690 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAK 343 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAr 343 (606)
..++++.+|+|+|||+++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 3789999999999999884
No 401
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=85.78 E-value=0.43 Score=45.58 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l 349 (606)
|.|.|+-|+||||.++.|++.+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 402
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=85.77 E-value=1.3 Score=46.13 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..|.|.|+||+|||||..+|...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999765
No 403
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.74 E-value=0.42 Score=42.92 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67999999999999999998864
No 404
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.73 E-value=0.46 Score=42.42 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999999865
No 405
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.68 E-value=0.42 Score=42.97 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 406
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.54 E-value=0.43 Score=43.78 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|.+|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999864
No 407
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.53 E-value=0.44 Score=43.16 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 67999999999999999998863
No 408
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.50 E-value=0.43 Score=43.00 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999998865
No 409
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.43 E-value=0.51 Score=49.32 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=23.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
..+.|.||+|+|||||.+.|++.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 67999999999999999999999853
No 410
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.37 E-value=0.45 Score=44.26 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|.+.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999999886
No 411
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.35 E-value=0.43 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||||+||||+.++|+..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 679999999999999999999875
No 412
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.32 E-value=0.45 Score=43.26 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998864
No 413
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.17 E-value=0.46 Score=43.44 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..|+|.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 679999999999999998887654
No 414
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=85.17 E-value=0.4 Score=43.21 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999999874
No 415
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.16 E-value=0.45 Score=43.68 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 416
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=85.08 E-value=0.47 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998864
No 417
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.07 E-value=0.42 Score=43.05 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998763
No 418
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.04 E-value=0.43 Score=43.71 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999864
No 419
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.03 E-value=0.47 Score=43.72 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.91 E-value=0.48 Score=42.82 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 421
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.89 E-value=0.55 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
..+.|.||+|+|||||.+.|++....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 67899999999999999999998853
No 422
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=84.88 E-value=0.47 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998754
No 423
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=84.87 E-value=0.56 Score=56.16 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHH
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~ 347 (606)
.+|.+..++.|.+.+... . ....|.|+|+.|.|||+||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~---------d---------------------~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL---------R---------------------PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC---------C---------------------SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc---------C---------------------CCeEEEEEcCCCccHHHHHHHHHH
Confidence 488888888887777310 0 026799999999999999999985
No 424
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=84.82 E-value=0.49 Score=43.01 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999998854
No 425
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=84.67 E-value=0.52 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..-++|.|+||+|||+++..+|..+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999988754
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.61 E-value=0.52 Score=44.81 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..|+|.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 427
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.59 E-value=0.52 Score=42.57 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 67999999999999999998753
No 428
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=84.48 E-value=0.51 Score=43.36 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~ 347 (606)
...|+|.|++|+|||+|...+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999998864
No 429
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=84.47 E-value=0.66 Score=45.20 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+++.|.+|+||||++..+|..+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999776
No 430
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.39 E-value=0.53 Score=42.64 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999998875
No 431
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=84.27 E-value=0.95 Score=50.86 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
.++|+.+|+|+|||+.+-.++..
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~ 45 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKD 45 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH
Confidence 67999999999999998877744
No 432
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.20 E-value=0.54 Score=43.16 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998864
No 433
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=84.20 E-value=0.49 Score=43.15 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998874
No 434
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=84.19 E-value=0.51 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3678999999999999999999765
No 435
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=84.16 E-value=1.8 Score=52.31 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA 346 (606)
..+|++||+|+|||.+|-..+
T Consensus 625 ~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 625 MDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CEEEEECCCCTTTHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 479999999999999876444
No 436
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=84.13 E-value=0.62 Score=42.12 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999999988753
No 437
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=84.12 E-value=0.77 Score=54.25 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..++|.||.|+||||+.|.++-.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999643
No 438
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=84.02 E-value=0.55 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~ 347 (606)
...+++.||||||||+++..+..
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999988655543
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=83.98 E-value=0.6 Score=44.64 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=24.7
Q ss_pred cccCCcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 322 ~~~~~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
...+...+|+||.|+|||++..+|.-.+..
T Consensus 20 ~f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 20 EFKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EeCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 334567899999999999999999877743
No 440
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.92 E-value=0.57 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998754
No 441
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=83.86 E-value=0.59 Score=42.67 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67999999999999999988653
No 442
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=83.83 E-value=1.2 Score=46.09 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.|+||+||||++..|+..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999765
No 443
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.83 E-value=0.3 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..++|.|++|+|||||.++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5699999999999999998764
No 444
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=83.77 E-value=0.57 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999998754
No 445
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.74 E-value=0.58 Score=42.81 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67999999999999999998764
No 446
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.70 E-value=0.65 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..-++|.|+||+|||++|..+|..+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998764
No 447
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=83.60 E-value=0.58 Score=43.43 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 67999999999999999998764
No 448
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=83.60 E-value=2.2 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA 346 (606)
..+|+.+|+|+|||+++...+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 679999999999999876544
No 449
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.58 E-value=0.59 Score=43.31 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999998864
No 450
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=83.50 E-value=0.59 Score=42.39 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6799999999999999999874
No 451
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=83.49 E-value=0.6 Score=44.70 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~ 347 (606)
...|+|.|++|+|||+|...+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998864
No 452
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.45 E-value=0.59 Score=43.15 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..|+|.|++|+|||+|...+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 679999999999999999988754
No 453
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.36 E-value=0.74 Score=48.91 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s 359 (606)
..|+++.|++|+|||++++.+...+ +..++.+|..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4899999999999999987766543 5566655543
No 454
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=83.36 E-value=0.54 Score=46.73 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 455
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=83.31 E-value=0.59 Score=43.24 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998754
No 456
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=83.15 E-value=0.63 Score=42.78 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 457
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=83.15 E-value=0.62 Score=43.07 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
...|+|.|++|+|||+|...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999877653
No 458
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=83.14 E-value=0.63 Score=42.88 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 67999999999999999998753
No 459
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=83.10 E-value=0.53 Score=44.14 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 6799999999999999999875
No 460
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=83.09 E-value=0.63 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 57999999999999999888753
No 461
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=83.06 E-value=0.64 Score=42.88 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 462
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=83.06 E-value=0.54 Score=44.08 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|.+.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998863
No 463
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=82.99 E-value=0.65 Score=42.89 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 67999999999999999998864
No 464
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=82.96 E-value=0.65 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999998753
No 465
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=82.90 E-value=0.54 Score=43.02 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~ 347 (606)
...|+|.|++|+|||+|...+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999874
No 466
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.83 E-value=0.44 Score=43.23 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA 346 (606)
...|+|.|++|+|||+|...+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999998775
No 467
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=82.77 E-value=0.64 Score=43.34 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|.+|+|||+|...+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 67999999999999999998864
No 468
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.77 E-value=0.64 Score=43.36 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 469
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=82.75 E-value=0.51 Score=42.72 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998864
No 470
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=82.70 E-value=0.92 Score=51.58 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
..++|.|+.|.|||+++-.++..+..
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~~ 218 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIAG 218 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 45799999999999999998887743
No 471
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.62 E-value=0.66 Score=42.69 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 6799999999999999999876
No 472
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=82.62 E-value=0.64 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988753
No 473
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=82.60 E-value=0.62 Score=42.53 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998874
No 474
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=82.49 E-value=1.4 Score=50.11 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCHHHHHHH
Q 007362 324 EKSNVLLMGPTGSGKTLLAK 343 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAr 343 (606)
....+++.||+|+|||+.|-
T Consensus 154 ~rk~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 34689999999999999543
No 475
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=82.30 E-value=0.68 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|.+.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 476
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=82.27 E-value=0.73 Score=43.24 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999998864
No 477
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=82.24 E-value=0.67 Score=50.74 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=22.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++|+..+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 578999999999999999999987
No 478
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.22 E-value=0.71 Score=43.03 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999998753
No 479
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.13 E-value=0.67 Score=43.51 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~ 347 (606)
...|+|.|++|+|||+|...+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 36899999999999999998875
No 480
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.96 E-value=0.74 Score=46.93 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+ .+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3678999999999999999999 54
No 481
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=81.95 E-value=0.61 Score=44.18 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6799999999999999998874
No 482
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.94 E-value=0.72 Score=43.58 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|.+.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999998764
No 483
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=81.89 E-value=0.68 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|..+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 67999999999999999998753
No 484
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=81.89 E-value=1.2 Score=49.77 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA 346 (606)
..+|+..|+|+|||+.....+
T Consensus 60 ~d~lv~~pTGsGKTl~~~lpa 80 (591)
T 2v1x_A 60 KEVFLVMPTGGGKSLCYQLPA 80 (591)
T ss_dssp CCEEEECCTTSCTTHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHH
Confidence 679999999999998766555
No 485
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=81.82 E-value=0.66 Score=42.62 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|.+.+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999998764
No 486
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=81.79 E-value=2.7 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=18.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
.++++..|+|+|||.++-..+-
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 6799999999999998766553
No 487
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=81.76 E-value=0.76 Score=48.16 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=22.9
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
....-.+|+||+|+|||||..+|+-.+
T Consensus 21 ~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 21 FQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344578899999999999999998765
No 488
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=81.73 E-value=0.36 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.+.|.||+|+|||||.++|+..+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 467899999999999999999873
No 489
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.52 E-value=0.74 Score=42.22 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..|+|.|++|+|||+|...+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999874
No 490
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.50 E-value=0.77 Score=42.30 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 491
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=81.46 E-value=0.76 Score=48.38 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4679999999999999999998654
No 492
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=81.33 E-value=0.51 Score=50.67 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|+|||||.++|+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 579999999999999999999743
No 493
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.30 E-value=0.97 Score=48.78 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~ 357 (606)
..-++|.|+||+|||++|..+|..+ +.+.+.++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 4679999999999999999888654 44444443
No 494
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=81.29 E-value=0.5 Score=42.96 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=10.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999988743
No 495
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=81.28 E-value=0.64 Score=42.76 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~ 347 (606)
...|+|.|.+|+|||+|...+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999988763
No 496
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=81.25 E-value=0.64 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|+|.||+|+|||||.+.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 56799999999999999998753
No 497
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=81.22 E-value=0.81 Score=44.34 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA 346 (606)
...+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3679999999999998766543
No 498
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=81.18 E-value=0.7 Score=43.15 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
...|+|.|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998863
No 499
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=81.14 E-value=0.48 Score=49.81 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.3
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+..++|+||+|+|||+|.++|+-.++
T Consensus 58 ~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 58 LGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445899999999999999999988875
No 500
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=80.93 E-value=2.5 Score=48.02 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTL 345 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAral 345 (606)
...+++.+|+|+|||+.+-..
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ 252 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAA 252 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHH
T ss_pred CCeEEEEeCCchhHHHHHHHH
Confidence 467999999999999765543
Done!