Query 007363
Match_columns 606
No_of_seqs 482 out of 3534
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 22:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1.1E-82 2.4E-87 674.8 43.8 459 43-502 60-550 (727)
2 PLN03192 Voltage-dependent pot 100.0 8.5E-81 1.8E-85 705.7 48.1 480 24-504 24-505 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 1.5E-67 3.3E-72 517.3 30.1 421 67-500 3-438 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 3.2E-66 6.8E-71 512.7 24.9 458 24-496 185-669 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.2E-60 2.6E-65 474.6 32.1 434 50-503 217-659 (815)
6 KOG3713 Voltage-gated K+ chann 99.9 1E-24 2.2E-29 217.9 12.8 250 43-322 173-450 (477)
7 KOG1419 Voltage-gated K+ chann 99.9 4.2E-22 9E-27 199.2 7.6 273 45-341 78-354 (654)
8 KOG1545 Voltage-gated shaker-l 99.8 1.8E-21 3.8E-26 184.7 -3.0 185 89-303 252-447 (507)
9 PRK09392 ftrB transcriptional 99.7 2.7E-16 5.9E-21 153.1 14.6 133 372-504 6-138 (236)
10 PRK11753 DNA-binding transcrip 99.6 1.2E-14 2.5E-19 139.1 16.2 123 382-504 6-130 (211)
11 cd00038 CAP_ED effector domain 99.6 1.4E-14 3E-19 123.5 11.5 113 380-492 1-114 (115)
12 KOG1113 cAMP-dependent protein 99.6 5.2E-15 1.1E-19 141.9 9.3 129 372-504 121-249 (368)
13 KOG4390 Voltage-gated A-type K 99.6 4.2E-17 9E-22 156.4 -7.5 183 90-303 227-410 (632)
14 COG2905 Predicted signal-trans 99.6 6.1E-14 1.3E-18 142.6 14.7 160 372-534 6-167 (610)
15 PRK10402 DNA-binding transcrip 99.5 5E-14 1.1E-18 135.9 13.1 113 390-502 25-138 (226)
16 PF00520 Ion_trans: Ion transp 99.5 3.3E-15 7.2E-20 141.3 4.5 192 94-298 1-200 (200)
17 COG0664 Crp cAMP-binding prote 99.5 9.3E-14 2E-18 133.0 14.2 130 376-505 3-133 (214)
18 PF00027 cNMP_binding: Cyclic 99.5 2.9E-14 6.2E-19 116.4 9.1 90 398-487 1-91 (91)
19 KOG0614 cGMP-dependent protein 99.5 2E-14 4.4E-19 143.8 6.6 132 365-500 146-277 (732)
20 smart00100 cNMP Cyclic nucleot 99.5 3E-13 6.4E-18 116.0 13.0 115 380-494 1-118 (120)
21 PRK11161 fumarate/nitrate redu 99.5 3.8E-13 8.3E-18 130.9 15.0 129 375-504 15-145 (235)
22 KOG1420 Ca2+-activated K+ chan 99.4 2E-14 4.3E-19 144.5 1.2 256 92-390 164-427 (1103)
23 KOG0614 cGMP-dependent protein 99.4 2.2E-13 4.8E-18 136.5 7.2 122 369-490 268-392 (732)
24 TIGR03697 NtcA_cyano global ni 99.4 3.4E-12 7.3E-17 120.2 12.7 101 404-504 1-104 (193)
25 PRK09391 fixK transcriptional 99.4 4.2E-12 9.1E-17 122.7 13.4 112 391-505 33-145 (230)
26 PLN02868 acyl-CoA thioesterase 99.4 6.1E-12 1.3E-16 132.2 14.6 118 372-491 7-124 (413)
27 PF07885 Ion_trans_2: Ion chan 99.3 7.8E-12 1.7E-16 98.7 9.5 56 248-303 23-78 (79)
28 PRK13918 CRP/FNR family transc 99.3 3E-11 6.4E-16 114.6 12.8 102 395-503 5-109 (202)
29 KOG1113 cAMP-dependent protein 99.2 1.2E-11 2.5E-16 119.2 6.5 117 368-487 235-351 (368)
30 PRK10537 voltage-gated potassi 98.9 2.5E-08 5.5E-13 102.8 14.2 55 248-302 167-221 (393)
31 KOG2968 Predicted esterase of 98.7 2E-08 4.2E-13 107.3 4.9 115 387-501 499-614 (1158)
32 KOG2302 T-type voltage-gated C 98.6 2E-07 4.4E-12 100.0 10.3 155 44-210 1098-1265(1956)
33 KOG3684 Ca2+-activated K+ chan 98.5 2.4E-06 5.3E-11 85.6 14.0 91 247-345 285-375 (489)
34 PF08412 Ion_trans_N: Ion tran 98.5 1.3E-07 2.7E-12 72.2 3.9 46 43-88 29-74 (77)
35 KOG2968 Predicted esterase of 98.3 2.3E-06 5E-11 91.9 8.2 115 390-504 109-231 (1158)
36 PF01007 IRK: Inward rectifier 98.2 8.1E-06 1.8E-10 82.1 9.9 97 204-307 41-144 (336)
37 PF11834 DUF3354: Domain of un 98.0 1E-05 2.3E-10 60.3 4.1 40 561-603 1-40 (69)
38 KOG4404 Tandem pore domain K+ 97.9 4.2E-05 9.1E-10 73.6 9.0 59 249-307 186-252 (350)
39 KOG1418 Tandem pore domain K+ 97.9 6.2E-05 1.3E-09 80.1 10.5 57 249-305 115-171 (433)
40 PRK11832 putative DNA-binding 97.8 0.00036 7.8E-09 64.4 13.3 110 388-501 14-124 (207)
41 KOG4404 Tandem pore domain K+ 97.5 0.00015 3.3E-09 69.8 6.0 53 247-299 78-130 (350)
42 PF04831 Popeye: Popeye protei 97.5 0.003 6.5E-08 54.6 13.0 111 383-497 14-131 (153)
43 KOG3193 K+ channel subunit [In 97.5 0.00012 2.5E-09 74.8 5.0 51 250-300 218-268 (1087)
44 KOG3827 Inward rectifier K+ ch 97.4 0.0017 3.6E-08 64.5 11.2 98 203-307 68-172 (400)
45 KOG3542 cAMP-regulated guanine 97.2 0.0008 1.7E-08 70.5 7.6 112 369-484 277-390 (1283)
46 PLN03223 Polycystin cation cha 97.2 0.0095 2.1E-07 68.1 16.3 55 56-110 1171-1233(1634)
47 KOG2301 Voltage-gated Ca2+ cha 96.9 0.0057 1.2E-07 72.9 11.5 166 91-288 474-647 (1592)
48 KOG2301 Voltage-gated Ca2+ cha 96.8 0.0033 7.2E-08 74.8 8.8 76 62-152 1158-1234(1592)
49 KOG2302 T-type voltage-gated C 96.2 0.15 3.3E-06 56.5 15.4 102 62-180 80-187 (1956)
50 KOG3542 cAMP-regulated guanine 95.9 0.012 2.6E-07 62.1 5.4 90 373-474 37-126 (1283)
51 KOG1418 Tandem pore domain K+ 95.9 0.0035 7.6E-08 66.7 1.6 48 248-295 241-296 (433)
52 PF00520 Ion_trans: Ion transp 93.5 0.7 1.5E-05 42.7 10.5 55 170-224 62-116 (200)
53 KOG3614 Ca2+/Mg2+-permeable ca 93.3 2.4 5.2E-05 49.5 15.6 89 56-153 789-877 (1381)
54 KOG3676 Ca2+-permeable cation 90.8 7.4 0.00016 43.2 15.0 131 199-335 541-680 (782)
55 PF00060 Lig_chan: Ligand-gate 90.5 0.42 9.1E-06 42.2 4.8 59 246-305 41-99 (148)
56 TIGR00870 trp transient-recept 89.4 9.9 0.00021 43.7 15.9 25 200-224 507-531 (743)
57 PF08016 PKD_channel: Polycyst 89.4 3 6.5E-05 44.3 10.9 23 89-111 241-263 (425)
58 COG4709 Predicted membrane pro 86.6 3.8 8.3E-05 37.0 7.9 74 314-389 5-83 (195)
59 KOG0498 K+-channel ERG and rel 85.1 73 0.0016 36.0 19.1 43 356-398 371-418 (727)
60 PLN03223 Polycystin cation cha 84.7 20 0.00044 42.4 14.2 18 132-149 1208-1225(1634)
61 PLN03192 Voltage-dependent pot 83.6 81 0.0018 36.7 19.4 41 563-603 744-785 (823)
62 PF07883 Cupin_2: Cupin domain 82.4 7.1 0.00015 29.1 7.0 67 399-473 3-70 (71)
63 KOG3599 Ca2+-modulated nonsele 79.7 29 0.00063 39.7 13.2 22 90-111 498-519 (798)
64 KOG4440 NMDA selective glutama 79.3 4.5 9.7E-05 43.2 6.2 93 207-303 575-667 (993)
65 KOG3609 Receptor-activated Ca2 75.9 9.2 0.0002 42.7 7.7 19 132-150 411-429 (822)
66 PF08006 DUF1700: Protein of u 74.3 19 0.00041 33.0 8.5 55 314-370 5-64 (181)
67 KOG1053 Glutamate-gated NMDA-t 65.1 87 0.0019 35.7 12.0 34 270-303 630-663 (1258)
68 KOG0500 Cyclic nucleotide-gate 61.8 2.2E+02 0.0048 30.2 14.5 83 334-434 250-358 (536)
69 PRK13290 ectC L-ectoine syntha 59.8 45 0.00098 28.5 7.2 69 397-473 38-106 (125)
70 KOG1054 Glutamate-gated AMPA-t 55.7 16 0.00035 39.0 4.5 55 248-303 594-648 (897)
71 KOG2378 cAMP-regulated guanine 55.3 8.9 0.00019 39.5 2.4 43 443-485 1-44 (573)
72 PF05899 Cupin_3: Protein of u 54.6 32 0.00068 26.3 4.9 30 415-448 26-55 (74)
73 TIGR00870 trp transient-recept 54.1 1.8E+02 0.0039 33.4 13.2 16 132-147 416-431 (743)
74 smart00835 Cupin_1 Cupin. This 53.3 40 0.00088 29.5 6.2 79 395-476 31-111 (146)
75 KOG3713 Voltage-gated K+ chann 52.1 45 0.00097 35.2 6.9 26 89-114 272-297 (477)
76 KOG1052 Glutamate-gated kainat 51.6 54 0.0012 37.1 8.3 55 250-305 382-436 (656)
77 PF07697 7TMR-HDED: 7TM-HD ext 51.0 1.4E+02 0.003 28.1 10.0 60 355-415 145-207 (222)
78 PF14377 DUF4414: Domain of un 48.8 49 0.0011 27.4 5.6 44 326-369 51-105 (108)
79 COG0662 {ManC} Mannose-6-phosp 46.9 53 0.0012 28.0 5.7 48 395-447 37-85 (127)
80 PF13314 DUF4083: Domain of un 46.2 1E+02 0.0022 22.1 5.8 14 310-323 42-55 (58)
81 PF10011 DUF2254: Predicted me 44.2 1E+02 0.0022 32.1 8.3 57 247-303 98-154 (371)
82 KOG3300 NADH:ubiquinone oxidor 42.9 1.4E+02 0.003 25.4 7.1 45 316-360 62-106 (146)
83 TIGR03037 anthran_nbaC 3-hydro 40.7 71 0.0015 28.5 5.5 57 414-476 48-104 (159)
84 PRK04190 glucose-6-phosphate i 36.4 1.5E+02 0.0033 27.4 7.3 52 397-448 71-131 (191)
85 PF02037 SAP: SAP domain; Int 35.1 82 0.0018 20.0 3.8 26 315-340 5-35 (35)
86 KOG0501 K+-channel KCNQ [Inorg 35.1 6.4E+02 0.014 27.6 13.3 50 355-404 499-553 (971)
87 COG1917 Uncharacterized conser 34.9 89 0.0019 26.7 5.3 50 396-450 45-95 (131)
88 PF07077 DUF1345: Protein of u 33.1 3.5E+02 0.0076 24.8 9.0 52 245-296 128-179 (180)
89 PRK13264 3-hydroxyanthranilate 32.1 1.1E+02 0.0024 27.8 5.5 59 412-476 52-110 (177)
90 COG5559 Uncharacterized conser 31.8 57 0.0012 23.3 2.8 23 325-347 8-30 (65)
91 TIGR03404 bicupin_oxalic bicup 31.3 1.2E+02 0.0025 31.5 6.3 52 397-448 70-121 (367)
92 PRK09108 type III secretion sy 31.1 6E+02 0.013 26.1 11.5 60 278-337 181-240 (353)
93 PRK11171 hypothetical protein; 30.6 1.8E+02 0.0039 28.6 7.2 69 397-473 64-134 (266)
94 PRK11171 hypothetical protein; 29.5 1.4E+02 0.003 29.4 6.2 49 395-448 185-234 (266)
95 COG3718 IolB Uncharacterized e 28.7 1.6E+02 0.0034 28.0 5.9 78 396-477 31-112 (270)
96 PRK09943 DNA-binding transcrip 28.0 2E+02 0.0043 26.3 6.7 66 400-473 113-179 (185)
97 PF14377 DUF4414: Domain of un 27.6 1.6E+02 0.0034 24.4 5.4 48 326-373 7-68 (108)
98 TIGR03404 bicupin_oxalic bicup 26.5 1.6E+02 0.0035 30.5 6.3 51 396-447 247-299 (367)
99 PF00190 Cupin_1: Cupin; Inte 25.8 2E+02 0.0043 25.0 6.0 52 398-449 38-96 (144)
100 COG4792 EscU Type III secretor 25.8 6.8E+02 0.015 25.0 12.6 44 290-333 192-235 (349)
101 KOG3599 Ca2+-modulated nonsele 25.7 8.2E+02 0.018 28.4 12.1 19 132-150 493-511 (798)
102 PRK10750 potassium transporter 25.1 1.5E+02 0.0033 31.9 6.1 44 247-290 302-347 (483)
103 smart00511 ORANGE Orange domai 24.7 2.2E+02 0.0048 19.0 5.0 35 310-344 5-40 (45)
104 COG3837 Uncharacterized conser 24.5 1.4E+02 0.0031 26.4 4.5 35 412-451 62-96 (161)
105 TIGR00933 2a38 potassium uptak 23.8 2.1E+02 0.0045 30.0 6.7 42 248-289 230-273 (390)
106 PRK08156 type III secretion sy 23.5 8.3E+02 0.018 25.2 11.7 55 283-337 179-233 (361)
107 PF13623 SurA_N_2: SurA N-term 23.5 5.1E+02 0.011 22.7 8.9 44 281-324 10-66 (145)
108 PF12973 Cupin_7: ChrR Cupin-l 23.5 2.6E+02 0.0057 22.0 5.8 63 396-472 26-88 (91)
109 PF06295 DUF1043: Protein of u 23.2 3.9E+02 0.0084 22.9 7.1 10 333-342 45-54 (128)
110 PF14841 FliG_M: FliG middle d 22.7 1.4E+02 0.003 23.1 3.8 41 351-399 29-69 (79)
111 PRK12721 secretion system appa 22.5 8.6E+02 0.019 25.0 11.6 61 278-338 179-239 (349)
112 PF03891 DUF333: Domain of unk 21.7 1.5E+02 0.0033 20.7 3.4 34 422-455 15-48 (50)
113 PHA03239 envelope glycoprotein 21.4 4.5E+02 0.0097 27.7 8.2 56 265-320 319-375 (429)
114 PHA00672 hypothetical protein 21.2 5.1E+02 0.011 22.0 7.5 34 395-429 48-81 (152)
115 TIGR00933 2a38 potassium uptak 20.7 6.1E+02 0.013 26.4 9.5 46 249-294 128-179 (390)
116 TIGR01479 GMP_PMI mannose-1-ph 20.6 3.1E+02 0.0068 29.5 7.4 70 396-473 378-448 (468)
117 TIGR03214 ura-cupin putative a 20.6 2.6E+02 0.0056 27.3 6.2 69 398-474 62-132 (260)
118 PRK12468 flhB flagellar biosyn 20.3 1E+03 0.022 24.9 11.6 46 293-338 201-246 (386)
119 PRK13109 flhB flagellar biosyn 20.2 9.6E+02 0.021 24.7 11.7 59 280-338 190-248 (358)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-82 Score=674.80 Aligned_cols=459 Identities=37% Similarity=0.637 Sum_probs=419.8
Q ss_pred ccccccCceEEcCCChhHHhHHHHHHHHHHHHHhhcceeeeeecC----------CCccchhhhHHHHHHHHhhheeeeE
Q 007363 43 EGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKA----------ATGSLLIVDLVVDFFFAADIIFTFF 112 (606)
Q Consensus 43 ~~~~~~~~~ii~P~s~~~~~W~~~~~~l~~~~~~~~p~~~~f~~~----------~~~~~~~~~~~~~~~f~~Di~l~f~ 112 (606)
++..+...++++|+|++++.||.+++++++|++++.|++++|... ....+.++|.++|++|++||+++|+
T Consensus 60 ~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Fr 139 (727)
T KOG0498|consen 60 ERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFR 139 (727)
T ss_pred cccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhhe
Confidence 344566778999999999999999999999999999999999766 4577899999999999999999999
Q ss_pred EEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcC-----ccCCCceechhhhhhhhHHHhHHHHHHH
Q 007363 113 VAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTG-----QLHDGRVFGFLNLLRLWRLRRVGELFTR 187 (606)
Q Consensus 113 t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~-----~~~~~~~~~~l~llrllRl~r~~~~~~~ 187 (606)
|+|.++.+.++|.||++|++||+++ ||++|++|++|++.++.+... .........++.+.|++|+.|+.+++.+
T Consensus 140 tayv~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r 218 (727)
T KOG0498|consen 140 TAYVDPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFAR 218 (727)
T ss_pred EEEECCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888999999999999999 999999999999988765332 1111145678899999999999999999
Q ss_pred hHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCCC-ceeccc-----cCC----cccCcchhhhhhH
Q 007363 188 LEKDIRFTY--FITRLSKLICVTLFAVHSAGCFYFYLAAHHK--IPEN-TWIGSQ-----VND----FKHRSIWLGYTYS 253 (606)
Q Consensus 188 l~~~~~~~~--~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~~--~~~~-~W~~~~-----~~~----~~~~~~~~~Y~~s 253 (606)
+++...+++ .|..+.++++.+++.+||+||+||+++.... +..+ +|+... ..+ +...+++.+|++|
T Consensus 219 ~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~a 298 (727)
T KOG0498|consen 219 LEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYA 298 (727)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHH
Confidence 999888766 4455779999999999999999999998665 5555 898852 233 6677889999999
Q ss_pred hHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHH
Q 007363 254 IYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLR 333 (606)
Q Consensus 254 ly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~ 333 (606)
+||+++||||+|||+.+|.|..|++|+|++|++|.++||++||+|++++++.+.+..+|+.++.++.+||+++++|++||
T Consensus 299 Lyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LR 378 (727)
T KOG0498|consen 299 LYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLR 378 (727)
T ss_pred HHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-cccHHHHHhhCCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCC
Q 007363 334 EQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNE 412 (606)
Q Consensus 334 ~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~ 412 (606)
+||++|++|+|+.. +.+++++|++||+.||+||+.|+|.++++++|+|+++|++++.+||..++.+.|+|||+|++|||
T Consensus 379 qRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd 458 (727)
T KOG0498|consen 379 QRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGD 458 (727)
T ss_pred HHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCC
Confidence 99999999999995 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe-ccccccC-CCcccEEEEcccEEEEEeCHHHHHhhhccChhhHH
Q 007363 413 IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG-EIGVIFN-IPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGK 490 (606)
Q Consensus 413 ~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG-e~~~l~~-~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~ 490 (606)
+.++||||.+|.+++....+|.+.+...+++||+|| |+..... .|.++||+|++.|+++.|++++|..+++.+|.+..
T Consensus 459 ~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~ 538 (727)
T KOG0498|consen 459 PVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGS 538 (727)
T ss_pred ccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHH
Confidence 999999999999999997778788899999999999 8888877 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 007363 491 KIMNNFIQYVKG 502 (606)
Q Consensus 491 ~~~~~~~~~l~~ 502 (606)
+++++....+..
T Consensus 539 ~~l~~~~r~~s~ 550 (727)
T KOG0498|consen 539 KFLQHTFRYYSH 550 (727)
T ss_pred HHHHhHHHHhhh
Confidence 999955444433
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=8.5e-81 Score=705.74 Aligned_cols=480 Identities=50% Similarity=0.886 Sum_probs=447.9
Q ss_pred ccccccccCCCCCCCccc-cccccccCceEEcCCChhHHhHHHHHHHHHHHHHhhcceeeeeecCC-CccchhhhHHHHH
Q 007363 24 KNLASVSSSLLPAFGTVV-DEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA-TGSLLIVDLVVDF 101 (606)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ii~P~s~~~~~W~~~~~~l~~~~~~~~p~~~~f~~~~-~~~~~~~~~~~~~ 101 (606)
-+..+.++.+||++|.+. +++..+.++|+|+|+++++++||++++++++|+++++|++++|.... ...+.++|.++|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~ 103 (823)
T PLN03192 24 LSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDL 103 (823)
T ss_pred eehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHH
Confidence 455577888999999995 77888899999999999999999999999999999999999997543 4468889999999
Q ss_pred HHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhH
Q 007363 102 FFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRV 181 (606)
Q Consensus 102 ~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~ 181 (606)
+|++|++++|+++|+++++|.+|.|+++|+++|+++ ||++|++|++|++++.....+.......+.+++++|++|+.|+
T Consensus 104 ~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri 182 (823)
T PLN03192 104 FFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRV 182 (823)
T ss_pred HHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999998876555443322345678899999999999
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhh
Q 007363 182 GELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTL 261 (606)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tl 261 (606)
.+++.++++..+.++.+.+++++++.+++++||+||+||+++..+...+.+|++...+++.+.+++.+|+.|+||+++||
T Consensus 183 ~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~Tm 262 (823)
T PLN03192 183 KQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTM 262 (823)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHH
Confidence 99999999988888888999999999999999999999999977777788999876678889999999999999999999
Q ss_pred hcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 007363 262 TTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQ 341 (606)
Q Consensus 262 ttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~ 341 (606)
|||||||++|.|+.|+++++++|++|++++||++|++++++.+.++++.+|+++++.+++||+++++|++||+||++|++
T Consensus 263 tTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~ 342 (823)
T PLN03192 263 TTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMC 342 (823)
T ss_pred hhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccHHHHHhhCCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEE
Q 007363 342 LRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVV 421 (606)
Q Consensus 342 ~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~ 421 (606)
+.|+.+..++++++++||++||.+++.+++.+.++++++|++++++++.+++..++++.|+|||.|+.+||.++++|||.
T Consensus 343 ~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~ 422 (823)
T PLN03192 343 LRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVV 422 (823)
T ss_pred HHHhhccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEE
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHH
Q 007363 422 SGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVK 501 (606)
Q Consensus 422 ~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~ 501 (606)
+|.|+++...+|++.++..+++|++|||.+++.+.|++++++|.++|++++|++++|.++++++|++...+++++.++.+
T Consensus 423 ~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~ 502 (823)
T PLN03192 423 SGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHK 502 (823)
T ss_pred ecEEEEEEecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99999988677788889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhh
Q 007363 502 GLK 504 (606)
Q Consensus 502 ~~~ 504 (606)
+++
T Consensus 503 ~l~ 505 (823)
T PLN03192 503 ELH 505 (823)
T ss_pred hhc
Confidence 654
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-67 Score=517.30 Aligned_cols=421 Identities=24% Similarity=0.415 Sum_probs=378.3
Q ss_pred HHHHHHHHHhhcceeeeeecCCC---ccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhcccccccc
Q 007363 67 LVVLVVYSAWASPFELAFRKAAT---GSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMD 143 (606)
Q Consensus 67 ~~~l~~~~~~~~p~~~~f~~~~~---~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iD 143 (606)
+.+.++|+.++++...+|++-.. ..|..+|+++|++|++|++++.+++|++. |.+|.|-++.++||+.+..|.+|
T Consensus 3 vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleq--GllV~~~~Kl~~hY~~s~~f~lD 80 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQ--GLLVKDTSKLRKHYVHSTQFKLD 80 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc--CeeehhhHHHHHHHHHhhhhhhh
Confidence 34567899999999888877653 34778999999999999999999999999 89999999999999999889999
Q ss_pred ccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007363 144 VASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLA 223 (606)
Q Consensus 144 lls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~i~ 223 (606)
++|++|+++++.... .....|++|++|+.|+..++.+.+....... ..++.+++..+++++||.||+||+++
T Consensus 81 ~l~liP~D~l~~~~~-------~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn-~fri~~lv~~~~ilfHWNaClYf~iS 152 (536)
T KOG0500|consen 81 VLSLIPLDLLLFKDG-------SASLERLNRLLKIYRLFEFFDRTETRTTYPN-AFRISKLVHYCLILFHWNACLYFLIS 152 (536)
T ss_pred hhhhcchhHHhhcCC-------cchHHHHHHHHHHHHHHHHHHHhccccCCch-HHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 999999999875432 2346688999999999988888776655544 47899999999999999999999999
Q ss_pred hcccCCCCceeccccCCc-----ccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007363 224 AHHKIPENTWIGSQVNDF-----KHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNM 298 (606)
Q Consensus 224 ~~~~~~~~~W~~~~~~~~-----~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i 298 (606)
...+...++|.+....+- ...+...+|+.|+||+..|+||+| -...|.+..|..|.|+-.++|+++||.++|++
T Consensus 153 ~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~V 231 (536)
T KOG0500|consen 153 KAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNV 231 (536)
T ss_pred HhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccH
Confidence 988888888988643332 234478899999999999999999 55789999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhh-cccHHHHHhhCCHHHHHHHHHHHhHhHhhh
Q 007363 299 TNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEK 377 (606)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~ 377 (606)
+++++++++...+|+++|+.++.||+.+++|..++.||.+||.|.|.++ ..+|+++++.||+.|+.+|+.+++.+.|++
T Consensus 232 GsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkk 311 (536)
T KOG0500|consen 232 GSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKK 311 (536)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998 678999999999999999999999999999
Q ss_pred hccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEecccccc---
Q 007363 378 TYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIF--- 454 (606)
Q Consensus 378 ~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~--- 454 (606)
+++|+++.+.++.+++..++++.|.|||+|+++||.+.+||+|.+|.++|.. +||.. +...+++|++|||++++.
T Consensus 312 V~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~-dDg~t-~~~~L~~G~~FGEisIlni~g 389 (536)
T KOG0500|consen 312 VRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA-DDGVT-VFVTLKAGSVFGEISILNIKG 389 (536)
T ss_pred hhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe-cCCcE-EEEEecCCceeeeeEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999987 45543 577999999999999875
Q ss_pred ---CCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHH
Q 007363 455 ---NIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYV 500 (606)
Q Consensus 455 ---~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l 500 (606)
|.+|++++|+++.+.+++|+++|+.+++++||+....+..+-.+.+
T Consensus 390 ~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~kgr~iL 438 (536)
T KOG0500|consen 390 NKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEKGRQIL 438 (536)
T ss_pred cccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999998888876544433
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-66 Score=512.69 Aligned_cols=458 Identities=23% Similarity=0.402 Sum_probs=400.0
Q ss_pred ccccccccCCCCCCCccccccccccCceEEcCCChhHHhHHHHHHHHHHHHHhhcceeeeeecCC--CccchhhhHHHHH
Q 007363 24 KNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA--TGSLLIVDLVVDF 101 (606)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~~~~W~~~~~~l~~~~~~~~p~~~~f~~~~--~~~~~~~~~~~~~ 101 (606)
....++...++|-+ +...++-++.+|..++.|+.+||++++++.+|+++++||.++|.... ...|..+|-++|+
T Consensus 185 a~vm~Lg~DilPQY----rQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDV 260 (971)
T KOG0501|consen 185 AEVMQLGSDILPQY----RQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDV 260 (971)
T ss_pred HHHHHhccccchhh----hhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhhh
Confidence 34456777788877 55678888999999999999999999999999999999999998765 4568889999999
Q ss_pred HHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhH
Q 007363 102 FFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRV 181 (606)
Q Consensus 102 ~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~ 181 (606)
+|++||+++|.|.|..++ |++|.||+.|+.+|+|+ ||++|++|++|++++..+-...-.-+..+..++..|++||.|+
T Consensus 261 IF~vDIvLNFHTTFVGPg-GEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRV 338 (971)
T KOG0501|consen 261 IFFVDIVLNFHTTFVGPG-GEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRV 338 (971)
T ss_pred hhhhhhhhhcceeeecCC-CceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 89999999999999999 9999999999999988765544323456677788888888887
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------cCCCCceeccccCCc-------------
Q 007363 182 GELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHH-------KIPENTWIGSQVNDF------------- 241 (606)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~-------~~~~~~W~~~~~~~~------------- 241 (606)
.|-+++. +.+....++.+++.+.+++||.||+||.++... ....++|+.....++
T Consensus 339 aRKLD~Y-----lEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~ 413 (971)
T KOG0501|consen 339 ARKLDHY-----LEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGT 413 (971)
T ss_pred HHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCce
Confidence 7776543 234446688889999999999999999998732 123568865432111
Q ss_pred --ccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007363 242 --KHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEI 319 (606)
Q Consensus 242 --~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~ 319 (606)
.+.+.-..|+.|+||.++.|||||+|++.|.|..|++|++++|++|.+++|-++|.++.+++++.+++.+|++.++.+
T Consensus 414 ~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnV 493 (971)
T KOG0501|consen 414 LVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNV 493 (971)
T ss_pred eecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 123445679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHhh-cccHHHHHhhCCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccc
Q 007363 320 LRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKA 398 (606)
Q Consensus 320 ~~~m~~~~i~~~l~~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~ 398 (606)
.+||+-.++|..|.+||.+|.--.|... +++.+++|.-.|+.+|.+|+.|++++.++.+|-|+-.|+.+++.|+..++.
T Consensus 494 ReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~ 573 (971)
T KOG0501|consen 494 REFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQT 573 (971)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHh
Confidence 9999999999999999999999999977 999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccC--CCcccEEEEcccEEEEEeCHH
Q 007363 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFN--IPQPFTVRTKRLSQVIRLSHH 476 (606)
Q Consensus 399 ~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~--~~~~~~v~a~~~~~l~~l~~~ 476 (606)
.+..|||.|++.||..+.++||++|.++|.+ |+ ++++.+++||.||+.-.-.+ ....+++||+++|.+..|.++
T Consensus 574 ~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ--DD--EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd 649 (971)
T KOG0501|consen 574 NHCAPGDLLYHTGESVDALCFVVSGSLEVIQ--DD--EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRD 649 (971)
T ss_pred ccCCCcceeeecCCccceEEEEEecceEEee--cC--cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHH
Confidence 9999999999999999999999999999987 32 37899999999997643222 246789999999999999999
Q ss_pred HHHhhhccChhhHHHHHHHH
Q 007363 477 HLKQMVPIDHGDGKKIMNNF 496 (606)
Q Consensus 477 ~f~~ll~~~p~~~~~~~~~~ 496 (606)
.+.+++.-|..+...+-+++
T Consensus 650 ~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 650 KLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred HHHHHHHHHHHHHHHhhhce
Confidence 99999988877777666654
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-60 Score=474.57 Aligned_cols=434 Identities=20% Similarity=0.380 Sum_probs=393.9
Q ss_pred ceEEcCCC-hhHHhHHHHHHHHHHHHHhhcceeeeeecCC---CccchhhhHHHHHHHHhhhee-eeEEEEEeCCCcEEE
Q 007363 50 KYVIAPYD-YRYRWWQTFLVVLVVYSAWASPFELAFRKAA---TGSLLIVDLVVDFFFAADIIF-TFFVAYLDKSTYLLV 124 (606)
Q Consensus 50 ~~ii~P~s-~~~~~W~~~~~~l~~~~~~~~p~~~~f~~~~---~~~~~~~~~~~~~~f~~Di~l-~f~t~y~~~~~g~~i 124 (606)
+-.|+|+. +++..|-.++.+...|+||++|++.+|.... ...|.++|+++|+++++|+++ +-+.-|... |.+|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrg--G~~i 294 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRG--GDII 294 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeC--ceEE
Confidence 46799999 8999999999999999999999999998765 346888999999999999964 444445444 8999
Q ss_pred ecHhHHHHHhhccccccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHHhHhhhhHHHHHHHHHHH
Q 007363 125 DDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKL 204 (606)
Q Consensus 125 ~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~l 204 (606)
.|.+..++||+++..|-+|++|++|+++++..++.. .++|+.|++++.....++..++..+... .++|+++.
T Consensus 295 k~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~-------p~wR~~R~lK~~sF~e~~~~Le~i~s~~-y~~RV~rT 366 (815)
T KOG0499|consen 295 KDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN-------PMWRANRMLKYTSFFEFNHHLESIMSKA-YIYRVIRT 366 (815)
T ss_pred EechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc-------hhhhhhhHHHHHHHHHHHHHHHHHhcch-hhhhhHHH
Confidence 999999999999988999999999999998776433 3568888888887777777777655433 45899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHH
Q 007363 205 ICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYM 284 (606)
Q Consensus 205 ~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~ 284 (606)
+.++++++|+.||+||+.+...+...+.|+.+..+ ..|+.|+|||+-|++|+| |...|.|..|.+|..+--
T Consensus 367 ~~YmlyilHinacvYY~~SayqglG~~rWVydg~G--------n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w 437 (815)
T KOG0499|consen 367 TGYLLYILHINACVYYWASAYQGLGTTRWVYDGEG--------NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNW 437 (815)
T ss_pred HHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCC--------CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHH
Confidence 99999999999999999998888889999987532 369999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhh-cccHHHHHhhCCHHHH
Q 007363 285 LFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIR 363 (606)
Q Consensus 285 i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr 363 (606)
+.|+++|+.+||.|-.++.+...++..|+..|+....||++.++|...|+||+.+|+|.|+++ ..+|.++++.||..||
T Consensus 438 ~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq 517 (815)
T KOG0499|consen 438 FMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQ 517 (815)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhhe
Confidence 999999999999999999999999999999999999999999999999999999999999988 8999999999999999
Q ss_pred HHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecC
Q 007363 364 SSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGS 443 (606)
Q Consensus 364 ~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~ 443 (606)
.+++..++..++.++.+|++|+.+.+.++...++.+.|.|||.|+++||.+..||||..|.|+|...++|. .++.++.+
T Consensus 518 ~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~-~Vl~tL~~ 596 (815)
T KOG0499|consen 518 LDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGT-KVLVTLKA 596 (815)
T ss_pred eeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCC-EEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877765 57889999
Q ss_pred CCEEecccccc---CCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhh
Q 007363 444 ADMAGEIGVIF---NIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGL 503 (606)
Q Consensus 444 G~~fGe~~~l~---~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~ 503 (606)
|+.|||++++. |.+|+++++|.+.|.++.|+++|+.+++..||+-...+.+.+.+.++.-
T Consensus 597 GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~n 659 (815)
T KOG0499|consen 597 GSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQN 659 (815)
T ss_pred cceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHhc
Confidence 99999999885 6789999999999999999999999999999998888888777776654
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-24 Score=217.92 Aligned_cols=250 Identities=18% Similarity=0.213 Sum_probs=172.7
Q ss_pred ccccccCceEEcCCCh-hHHhHHHHHHHHHHHHHhhcceee--eee-----------------cCCCccchhhhHHHHHH
Q 007363 43 EGHLRLKKYVIAPYDY-RYRWWQTFLVVLVVYSAWASPFEL--AFR-----------------KAATGSLLIVDLVVDFF 102 (606)
Q Consensus 43 ~~~~~~~~~ii~P~s~-~~~~W~~~~~~l~~~~~~~~p~~~--~f~-----------------~~~~~~~~~~~~~~~~~ 102 (606)
+.+++....+-+|+|. ..++..++.++.++.+++.+.+.. .|. ......+.++|.++.++
T Consensus 173 ~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~W 252 (477)
T KOG3713|consen 173 RLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAW 252 (477)
T ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHH
Confidence 3556667788999965 556666666666666665544433 111 11244588999999999
Q ss_pred HHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHh--cC-ccCC-CceechhhhhhhhHH
Q 007363 103 FAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIF--TG-QLHD-GRVFGFLNLLRLWRL 178 (606)
Q Consensus 103 f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~--~~-~~~~-~~~~~~l~llrllRl 178 (606)
|.+|+++||..+ .-+.+|+|++.++||++|++||++-.... .+ ...+ .....++|++|++|+
T Consensus 253 FT~E~llR~~~~--------------P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI 318 (477)
T KOG3713|consen 253 FTFEYLLRFLVA--------------PNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRI 318 (477)
T ss_pred HHHHHHHHHHcC--------------chHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHH
Confidence 999999999876 33489999999999999999998754332 21 0100 122244555555555
Q ss_pred HhHHHHHHHhHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHh
Q 007363 179 RRVGELFTRLEKDIR----FTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSI 254 (606)
Q Consensus 179 ~r~~~~~~~l~~~~~----~~~~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sl 254 (606)
+|++|+-.+...... +......+..+++++.+.+-++|.+-|+++.... .+.+.+...++
T Consensus 319 ~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~----------------~~~FtSIPa~~ 382 (477)
T KOG3713|consen 319 LRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEP----------------DTKFTSIPAGF 382 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----------------CCCCccccchh
Confidence 555554433222111 2222344555666666667778888888875221 22267788999
Q ss_pred HhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 007363 255 YWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRY 322 (606)
Q Consensus 255 y~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 322 (606)
|||++|||||||||++|.|..+++++...+++|+++.|+.|..|.+-+...++..++.++....-+..
T Consensus 383 WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~~~ 450 (477)
T KOG3713|consen 383 WWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKRREAL 450 (477)
T ss_pred heeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999988887777665555444444333
No 7
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.2e-22 Score=199.15 Aligned_cols=273 Identities=14% Similarity=0.204 Sum_probs=178.7
Q ss_pred ccccCceEEcCCChhHHhHHHHHHHHHHHHHhhcceeeeeec--CCCccchhhhHHHHHHHHhhheeeeEEEEEeCCCcE
Q 007363 45 HLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRK--AATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYL 122 (606)
Q Consensus 45 ~~~~~~~ii~P~s~~~~~W~~~~~~l~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~ 122 (606)
+-+.+++.-.|..+....++.+++++++.++++..+...-+. .....++++++++.++|.+|+++|++.+-++.+
T Consensus 78 q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r--- 154 (654)
T KOG1419|consen 78 QNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR--- 154 (654)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---
Confidence 355678999999998899999988887777766655542222 236678999999999999999999997644432
Q ss_pred EEecHhHHHHHhhccccccccccccchHHHHHHH-hcCccCCCceechhhhhhhhHHHhHHHHHHHhHhhhhHHHHHH-H
Q 007363 123 LVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRI-FTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFIT-R 200 (606)
Q Consensus 123 ~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~-~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~~~~~~~~~~~-~ 200 (606)
.-.+.-+.+|.+++..+||++.++.....+.. ..++...+..++-+|++.++|++|+-|--..++-...+.+... .
T Consensus 155 --YrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~E 232 (654)
T KOG1419|consen 155 --YRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKE 232 (654)
T ss_pred --cccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHH
Confidence 11122336789998999999966654332211 1122222344555666666777766655443332222222212 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHH
Q 007363 201 LSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFN 280 (606)
Q Consensus 201 ~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~ 280 (606)
++....+-+++..+.+.+-|+.+.... +-..+..+..|.+|+||+++|+|||||||.+|+|+.+++++
T Consensus 233 LiTt~YIGFL~LIfsSflVYLaEKd~~------------~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~la 300 (654)
T KOG1419|consen 233 LITTWYIGFLVLIFSSFLVYLAEKDAQ------------GEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLA 300 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc------------cccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHH
Confidence 333333334444444555554443211 11234567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 007363 281 MLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQ 341 (606)
Q Consensus 281 i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~ 341 (606)
.++.++|+.+||..-|.+++-++-.-+++. .-++|-+.++.-..|.+-.-+||.
T Consensus 301 a~fsligiSFFALPAGILGSGfALKVQeq~-------RQKHf~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 301 ACFSLIGISFFALPAGILGSGFALKVQEQH-------RQKHFNRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred HHHHHHHHHHHhcccccccchhhhhhHHHH-------HHHHHHhhcchHHHHHHHHHHHHh
Confidence 999999999999999999887764433322 234555556665666655555543
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.8e-21 Score=184.66 Aligned_cols=185 Identities=19% Similarity=0.318 Sum_probs=130.2
Q ss_pred CccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhc-Ccc------
Q 007363 89 TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFT-GQL------ 161 (606)
Q Consensus 89 ~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~-~~~------ 161 (606)
..++++++.++.++|.+++++||+.+ .....+.++..+++|+++++|+.+.+..-. ...
T Consensus 252 ~dPFFiVEt~CIiWFtfEllvRf~aC--------------PsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~g 317 (507)
T KOG1545|consen 252 TDPFFIVETLCIIWFTFELLVRFFAC--------------PSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQG 317 (507)
T ss_pred CCchHhHHHHHHHHHhHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccc
Confidence 34688999999999999999999877 222668888789999999999987553211 111
Q ss_pred CCCceechhhhhhhhHHHhHHHHHHHhHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccc
Q 007363 162 HDGRVFGFLNLLRLWRLRRVGELFTRLEKDI----RFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQ 237 (606)
Q Consensus 162 ~~~~~~~~l~llrllRl~r~~~~~~~l~~~~----~~~~~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~ 237 (606)
.+.-.+.+||++||.|++|++++-.+-.... .+..++..+..+++++++-+.+++...|+.+.
T Consensus 318 qqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEa------------- 384 (507)
T KOG1545|consen 318 QQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEA------------- 384 (507)
T ss_pred hhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeec-------------
Confidence 1113456777777777777766543222111 12223345555555555555555555554432
Q ss_pred cCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 238 VNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (606)
Q Consensus 238 ~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~ 303 (606)
-+..+.+.+..+|+|||++|||||||||..|.|..++++..++.+.|++-.|+.+..|.+-+.
T Consensus 385 ---de~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 385 ---DEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred ---CCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccc
Confidence 123455677889999999999999999999999999999999999999999988877665544
No 9
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.69 E-value=2.7e-16 Score=153.07 Aligned_cols=133 Identities=18% Similarity=0.251 Sum_probs=124.9
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIG 451 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 451 (606)
.+.++..++|+.++++.++.+....+.+.|++|+.|+++||.++.+|+|.+|.|+++...+|++..+..+++|++||+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~ 85 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA 85 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence 35788999999999999999999999999999999999999999999999999999986677788899999999999999
Q ss_pred cccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 452 VIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 452 ~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
++.+.++.++++|.++|+++.+++++|.+++.++|.+...+...+.++++...
T Consensus 86 ~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~ 138 (236)
T PRK09392 86 VVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLV 138 (236)
T ss_pred HhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888777654
No 10
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.62 E-value=1.2e-14 Score=139.09 Aligned_cols=123 Identities=22% Similarity=0.341 Sum_probs=113.4
Q ss_pred cCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCC-Ccc
Q 007363 382 QGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNI-PQP 459 (606)
Q Consensus 382 ~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~-~~~ 459 (606)
+.+|++.+++++..++.+.|++|++|+.+|++++.+|+|.+|.++++. ..+|++..+..+++|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 568999999999999999999999999999999999999999999997 457888889999999999999988864 688
Q ss_pred cEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 460 FTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 460 ~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
++++|.++|+++.+++++|.++++++|++...+.+.+.+++....
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~ 130 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTS 130 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888886654
No 11
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.58 E-value=1.4e-14 Score=123.54 Aligned_cols=113 Identities=27% Similarity=0.466 Sum_probs=104.4
Q ss_pred cccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCCCc
Q 007363 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQ 458 (606)
Q Consensus 380 ~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~~~ 458 (606)
+|+.++++.+..++..++.+.+.+|++|+.+|+..+.+|+|.+|.++++. ..+|++..+..+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 47899999999999999999999999999999999999999999999987 34567778889999999999998888999
Q ss_pred ccEEEEcccEEEEEeCHHHHHhhhccChhhHHHH
Q 007363 459 PFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKI 492 (606)
Q Consensus 459 ~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~ 492 (606)
.++++|.++|+++.+++++|.+++.++|+....+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999876554
No 12
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=5.2e-15 Score=141.93 Aligned_cols=129 Identities=21% Similarity=0.396 Sum_probs=116.7
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIG 451 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 451 (606)
.+.+++.-+|++++++.+.++...|.++.+++|+.|++|||.++.+|+|.+|+++|+. +|+ .+..+++|+.|||++
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv--~~~--~v~~~~~g~sFGElA 196 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV--NGT--YVTTYSPGGSFGELA 196 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE--CCe--EEeeeCCCCchhhhH
Confidence 4577888999999999999999999999999999999999999999999999999997 443 688999999999999
Q ss_pred cccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 452 VIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 452 ~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
++.+.||.+|+.|++++.+|.|++..|.+++..+..-.++++..+.+....++
T Consensus 197 Lmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~ 249 (368)
T KOG1113|consen 197 LMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILE 249 (368)
T ss_pred hhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhH
Confidence 99999999999999999999999999999998887777777777766655554
No 13
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.55 E-value=4.2e-17 Score=156.45 Aligned_cols=183 Identities=17% Similarity=0.292 Sum_probs=126.8
Q ss_pred ccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcCccCCCceech
Q 007363 90 GSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGF 169 (606)
Q Consensus 90 ~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~ 169 (606)
..++.+|..+.++|..++++|++.+ ..+.+|+++-..++|+++++|+++-......... +..+--
T Consensus 227 ~aFFclDTACVmIFT~EYlLRL~aA--------------PsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DV-SGaFVT 291 (632)
T KOG4390|consen 227 VAFFCLDTACVMIFTGEYLLRLFAA--------------PSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDV-SGAFVT 291 (632)
T ss_pred eeeEEecceeEEEeeHHHHHHHHcC--------------chHHHHHHHHHHHHHHhhhhhhheEEEecCCccc-cceeEE
Confidence 3477889999999999999999887 3347899998899999999999875433332221 133333
Q ss_pred hhhhhhhHHHhHHHHHHHhHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchh
Q 007363 170 LNLLRLWRLRRVGELFTRLEKD-IRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWL 248 (606)
Q Consensus 170 l~llrllRl~r~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~ 248 (606)
||++|++|+++..|--+.++-. +.+..-...+..+++.+.+.+.++|.++|+.+.. .+.+.+.
T Consensus 292 LRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg----------------~~at~FT 355 (632)
T KOG4390|consen 292 LRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKG----------------SSATKFT 355 (632)
T ss_pred EEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc----------------ccccccc
Confidence 4555555554443332222211 1111112344555555656666778888877642 2345567
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~ 303 (606)
+...|+|+.++||||.||||.+|.|..+++|..++.+.|+++.|+.+..|.+-+.
T Consensus 356 sIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFS 410 (632)
T KOG4390|consen 356 SIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFS 410 (632)
T ss_pred cCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechh
Confidence 7889999999999999999999999999999999999999998886655544443
No 14
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.55 E-value=6.1e-14 Score=142.60 Aligned_cols=160 Identities=12% Similarity=0.208 Sum_probs=135.7
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIG 451 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 451 (606)
.++++++|.|+.++++.+++|...+....|.+||+|+..|.+.+++|+|.+|.|+++. ++|. ++..+.+|+.||..+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~-~~g~--v~~~~~~gdlFg~~~ 82 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS-DGGE--VLDRLAAGDLFGFSS 82 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc-CCCe--eeeeeccCccccchh
Confidence 5688999999999999999999999999999999999999999999999999999986 4444 789999999999999
Q ss_pred cccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhhhhhcc--cHHHHHHhhcccccccccc
Q 007363 452 VIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDE--LPFLTELLSDLNIEITGRN 529 (606)
Q Consensus 452 ~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 529 (606)
++++.+....+.|.+++-+|.||++.|.+++.++|++...+......|++....+..+. -.++..++.+.....+...
T Consensus 83 l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~~~~v 162 (610)
T COG2905 83 LFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLPAVTV 162 (610)
T ss_pred hcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCCCccc
Confidence 99999888899999999999999999999999999999999999999998655433332 2355555555554445544
Q ss_pred CCCCC
Q 007363 530 EEPKN 534 (606)
Q Consensus 530 ~~~~~ 534 (606)
+....
T Consensus 163 ~~~~~ 167 (610)
T COG2905 163 SPQAS 167 (610)
T ss_pred CccCc
Confidence 44443
No 15
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.54 E-value=5e-14 Score=135.95 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=104.3
Q ss_pred HHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccE
Q 007363 390 AQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLS 468 (606)
Q Consensus 390 ~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~ 468 (606)
.++...++.+.|++|+.|+.+||+++.+|+|.+|.|+++. ..+|++.++..+.+|++||+.+++.+.+++++++|.++|
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~ 104 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEEC 104 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccE
Confidence 4577788999999999999999999999999999999997 457888889999999999999999999999999999999
Q ss_pred EEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHh
Q 007363 469 QVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502 (606)
Q Consensus 469 ~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~ 502 (606)
+++.+++++|.+++.++|.+...+++.+.+++..
T Consensus 105 ~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~ 138 (226)
T PRK10402 105 WCLALPMKDCRPLLLNDALFLRKLCKFLSHKNYR 138 (226)
T ss_pred EEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888877544
No 16
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.54 E-value=3.3e-15 Score=141.31 Aligned_cols=192 Identities=21% Similarity=0.314 Sum_probs=126.2
Q ss_pred hhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcCccCC-Cceechhhh
Q 007363 94 IVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHD-GRVFGFLNL 172 (606)
Q Consensus 94 ~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~~~~~-~~~~~~l~l 172 (606)
++|.+++++|.+|+++++++.... +++|++++|+++|+++++|..+..........+ ....+++++
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL 67 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence 478999999999999999865111 578999989999999999995543222111000 012334444
Q ss_pred hhhhHHHhHHHHHHHhHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhh
Q 007363 173 LRLWRLRRVGELFTRLEKDIR-FTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYT 251 (606)
Q Consensus 173 lrllRl~r~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~ 251 (606)
+|++|++|+.+..+.+..... ......++.+++..++++.|+.||+++.+..........+.....++....+.+++|.
T Consensus 68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 147 (200)
T PF00520_consen 68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFG 147 (200)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHH
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccc
Confidence 444444444444433333211 2233456788888889999999999998876433222221111123445567788999
Q ss_pred hHhHhhhhhhhcccccccccC-----CchhHHHH-HHHHHHHHHHHHHHHHHH
Q 007363 252 YSIYWSIVTLTTVGYGDLHAV-----NTGEKVFN-MLYMLFNIGLTAYIIGNM 298 (606)
Q Consensus 252 ~sly~a~~tlttvGyGdi~p~-----t~~e~i~~-i~~~i~g~~~~a~~i~~i 298 (606)
.|+||++.++|+.||||..|. +..+.++. ++..+.+++++++++|.|
T Consensus 148 ~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 148 ESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999999999999999999987 88888888 666666678888888764
No 17
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.54 E-value=9.3e-14 Score=132.98 Aligned_cols=130 Identities=15% Similarity=0.282 Sum_probs=117.7
Q ss_pred hhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEecccccc
Q 007363 376 EKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIF 454 (606)
Q Consensus 376 ~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~ 454 (606)
...+.|...+++....+....+.+.+++|++|+.+||.++.+|+|.+|.++++. ..+|++..+..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 345667777888888888899999999999999999999999999999999998 4468888899999999999999999
Q ss_pred CCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 455 NIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 455 ~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
+.|++++++|.++|+++.+++++|.+++.++|.+...+...+.++++....
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~ 133 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALE 133 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999877899999999999888887653
No 18
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.54 E-value=2.9e-14 Score=116.38 Aligned_cols=90 Identities=30% Similarity=0.455 Sum_probs=82.5
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEee-CCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHH
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHH 476 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~ 476 (606)
++.|++|++|+++|+.++.+|+|++|.++++... +|+...+..+++|++||+.+++.+.++.++++|.++|+++.|+++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 3689999999999999999999999999999844 444556889999999999999999999999999999999999999
Q ss_pred HHHhhhccChh
Q 007363 477 HLKQMVPIDHG 487 (606)
Q Consensus 477 ~f~~ll~~~p~ 487 (606)
+|.++++++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999999985
No 19
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.50 E-value=2e-14 Score=143.82 Aligned_cols=132 Identities=19% Similarity=0.327 Sum_probs=115.1
Q ss_pred HHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCC
Q 007363 365 SISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSA 444 (606)
Q Consensus 365 ~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G 444 (606)
.-..++.++.+++..++++++.+++.+++..|.+..|.+|+.|++|||+++.+|++.+|+++|.. +|+ .++.+++|
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~--ll~~m~~g 221 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGK--LLGKMGAG 221 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCe--eeeccCCc
Confidence 34456778889999999999999999999999999999999999999999999999999999986 554 79999999
Q ss_pred CEEeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHH
Q 007363 445 DMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYV 500 (606)
Q Consensus 445 ~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l 500 (606)
..|||++++.+++|++|++|.++|++|.|+|+.|+.+|...-.....-..++++..
T Consensus 222 tvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv 277 (732)
T KOG0614|consen 222 TVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSV 277 (732)
T ss_pred hhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999776444333333443333
No 20
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.50 E-value=3e-13 Score=116.05 Aligned_cols=115 Identities=22% Similarity=0.395 Sum_probs=103.5
Q ss_pred cccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEeccccc--cCC
Q 007363 380 LFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVI--FNI 456 (606)
Q Consensus 380 ~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~~l--~~~ 456 (606)
+|.+++++.+++++..++.+.|++|++|+++|+.++.+|+|.+|.++++.. .+|++..+..+++|++||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 578999999999999999999999999999999999999999999999974 46777789999999999999988 356
Q ss_pred CcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHH
Q 007363 457 PQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMN 494 (606)
Q Consensus 457 ~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 494 (606)
+...+++|.++|.++.++.+++.+.+..++.....+++
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 78899999999999999999999999999877655543
No 21
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.50 E-value=3.8e-13 Score=130.86 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=112.4
Q ss_pred hhhhccccCCCHHHHHHHHHhccc-eecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEecccc
Q 007363 375 VEKTYLFQGVSVDLIAQMVSEMKA-EYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGV 452 (606)
Q Consensus 375 l~~~~~F~~~~~~~l~~l~~~~~~-~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~ 452 (606)
+++.+.|..++++.++.|....+. +.|++|+.|+.+||.++.+|+|.+|.|+++. ..+|++.++..+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 455555667999999999988864 6899999999999999999999999999998 45788888889999999998766
Q ss_pred ccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 453 IFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 453 l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
+. .+.+.+++|.++|+++.+++++|.+++.++|++...+++.+.+++....
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~ 145 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQ 145 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 54 4566789999999999999999999999999999999998887776544
No 22
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.44 E-value=2e-14 Score=144.53 Aligned_cols=256 Identities=20% Similarity=0.295 Sum_probs=158.8
Q ss_pred chhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcCccCCCceechhh
Q 007363 92 LLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLN 171 (606)
Q Consensus 92 ~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~ 171 (606)
-..+|+.++++|++-+++||..+ -|+ ..|+-..+.++|++.+-|..+.+.+- ..+--+|
T Consensus 164 tqqidlafnifflvyffirfiaa-sdk-------------lwf~lemys~vdfftippsfvsiyl~-------r~wlglr 222 (1103)
T KOG1420|consen 164 TQQIDLAFNIFFLVYFFIRFIAA-SDK-------------LWFWLEMYSVVDFFTIPPSFVSIYLN-------RSWLGLR 222 (1103)
T ss_pred HHHhhhHhhHHHHHHHHHHHhhc-ccc-------------eeeeeehhhheeeeecCchheEEEec-------cchHHHH
Confidence 45789999999999999999876 111 22222224556776666665432211 2222367
Q ss_pred hhhhhHHHhHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhh
Q 007363 172 LLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYT 251 (606)
Q Consensus 172 llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~ 251 (606)
++|.+|+..+..+++.+.-....+ .+++..++.+++-+....|.+.++++ +..+.|-+ +. ++..-.|.
T Consensus 223 flralrlmtvpdilqylnilktss--sirl~qlvsifisvwltaag~ihlle----nsgdp~~~-----f~-n~hrltyw 290 (1103)
T KOG1420|consen 223 FLRALRLMTVPDILQYLNILKTSS--SIRLVQLVSIFISVWLTAAGFIHLLE----NSGDPWEN-----FQ-NNHRLTYW 290 (1103)
T ss_pred HHHHHHhccHHHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhhcceeehhh----cCCChhHh-----cc-Ccccchhh
Confidence 777777777777666554222211 25666666666655555666666665 34444532 11 22234799
Q ss_pred hHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCC--
Q 007363 252 YSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLP-- 329 (606)
Q Consensus 252 ~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~-- 329 (606)
.+.|+.++||+||||||++..|..+++|.+++++.|..+||-.+..+..++.+.++-..+|+..-. + +++-
T Consensus 291 ~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg------k-khivvc 363 (1103)
T KOG1420|consen 291 ECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG------K-KHIVVC 363 (1103)
T ss_pred heeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC------C-eeEEEe
Confidence 999999999999999999999999999999999999999999999999999877654444432110 0 0000
Q ss_pred -HHHHHHHHHHHHHHHHhh--ccc-HHHHHhhCCHHHHHHHHHHHhHhHhhhhccccC--CCHHHHH
Q 007363 330 -EGLREQMLAHMQLRFKTA--ELQ-QEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQG--VSVDLIA 390 (606)
Q Consensus 330 -~~l~~rv~~y~~~~~~~~--~~~-~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~--~~~~~l~ 390 (606)
.-.-+.|-.|++-...++ ..+ |--+|...||.|--| -++++.+.++.+|++ +++-.+.
T Consensus 364 ghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 364 GHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred cceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhh
Confidence 001112222222111222 222 334677778777654 456677778888875 4444443
No 23
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.42 E-value=2.2e-13 Score=136.52 Aligned_cols=122 Identities=19% Similarity=0.271 Sum_probs=110.7
Q ss_pred HHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCC--ceeEEEEecCCCE
Q 007363 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNG--AEQFLTKLGSADM 446 (606)
Q Consensus 369 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g--~~~~~~~l~~G~~ 446 (606)
+.+.++|+++|+|++++++.+.+++..++...|.+|++|++||+.++.+|+|.+|.|.|.....+ .++.+..+++||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 45678999999999999999999999999999999999999999999999999999999985444 4556889999999
Q ss_pred EeccccccCCCcccEEEEccc-EEEEEeCHHHHHhhhccChhhHH
Q 007363 447 AGEIGVIFNIPQPFTVRTKRL-SQVIRLSHHHLKQMVPIDHGDGK 490 (606)
Q Consensus 447 fGe~~~l~~~~~~~~v~a~~~-~~l~~l~~~~f~~ll~~~p~~~~ 490 (606)
|||-+++....|++++.|..+ ++++.|+++.|.+++-...++.+
T Consensus 348 FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~e 392 (732)
T KOG0614|consen 348 FGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKE 392 (732)
T ss_pred hhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhh
Confidence 999999999999999999987 99999999999999977655544
No 24
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.39 E-value=3.4e-12 Score=120.21 Aligned_cols=101 Identities=12% Similarity=0.202 Sum_probs=92.4
Q ss_pred CceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCCC--cccEEEEcccEEEEEeCHHHHHh
Q 007363 404 KVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIP--QPFTVRTKRLSQVIRLSHHHLKQ 480 (606)
Q Consensus 404 ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~~--~~~~v~a~~~~~l~~l~~~~f~~ 480 (606)
|+.|+.+||+++.+|+|.+|.|+++. ..+|++..+..+++|++||+.+++.+.+ +.++++|.++|+++.+++++|.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 78999999999999999999999997 5678888899999999999999998775 45789999999999999999999
Q ss_pred hhccChhhHHHHHHHHHHHHHhhh
Q 007363 481 MVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 481 ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
++.++|++...+++.+.+++....
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~~ 104 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQTE 104 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887754
No 25
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.38 E-value=4.2e-12 Score=122.74 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=100.4
Q ss_pred HHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEE
Q 007363 391 QMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQ 469 (606)
Q Consensus 391 ~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~ 469 (606)
.++...+.+.|++|++|+.+||.++.+|+|.+|.|+++. ..+|++.++..+.+|++||+. .+.++.++++|.++|+
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~ 109 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTT 109 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceE
Confidence 456677889999999999999999999999999999997 567888888899999999964 4667889999999999
Q ss_pred EEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 470 VIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 470 l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
++.+++++|.+++.++|++...+++.+.++++....
T Consensus 110 v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~ 145 (230)
T PRK09391 110 VRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQD 145 (230)
T ss_pred EEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888876543
No 26
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.37 E-value=6.1e-12 Score=132.18 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=104.3
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIG 451 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 451 (606)
.++++++++|++++++.+++++..++.+.|++|++|+++||.++.+|+|.+|.|+++....+.+..+..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence 4568899999999999999999999999999999999999999999999999999988433336678899999999985
Q ss_pred cccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHH
Q 007363 452 VIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKK 491 (606)
Q Consensus 452 ~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~ 491 (606)
+.+.++.++++|.++|+++.|+++.|..+...++-...+
T Consensus 86 -l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~~ 124 (413)
T PLN02868 86 -LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSDK 124 (413)
T ss_pred -hCCCCcccEEEECCCEEEEEEcHHHHhhhcccccccccC
Confidence 688899999999999999999999999887666544433
No 27
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.33 E-value=7.8e-12 Score=98.67 Aligned_cols=56 Identities=32% Similarity=0.670 Sum_probs=50.0
Q ss_pred hhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (606)
Q Consensus 248 ~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~ 303 (606)
.+|.+|+||+++|+||+||||+.|.++.+|+++++.+++|+.++++.++.+++.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46999999999999999999999999999999999999999999999999988764
No 28
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.29 E-value=3e-11 Score=114.64 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=87.5
Q ss_pred hccceecCCCceEEecCC--CCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEE
Q 007363 395 EMKAEYFPPKVEIILQNE--IPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVI 471 (606)
Q Consensus 395 ~~~~~~~~~ge~I~~~g~--~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~ 471 (606)
..+.+.|++|++|+.+|| .++.+|+|++|.|+++. ..+|++.++..+++|++||+.+++ +.+++++++|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 456789999999999999 77999999999999998 567899999999999999997654 67899999999999999
Q ss_pred EeCHHHHHhhhccChhhHHHHHHHHHHHHHhh
Q 007363 472 RLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGL 503 (606)
Q Consensus 472 ~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~ 503 (606)
.|++++| +|++...++..+.+++...
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~~~ 109 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLARA 109 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHHHH
Confidence 9999987 5677777777776665543
No 29
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=1.2e-11 Score=119.15 Aligned_cols=117 Identities=20% Similarity=0.342 Sum_probs=107.8
Q ss_pred HHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEE
Q 007363 368 QHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 368 ~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 447 (606)
..++.++|+++|+++.|.......++..+.++.|.+|+.|+.||+.++.+|+|.+|+|.+....+| ..+ .++.|++|
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~--v~v-kl~~~dyf 311 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG--VEV-KLKKGDYF 311 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC--eEE-Eechhhhc
Confidence 356788999999999999999999999999999999999999999999999999999999875544 344 99999999
Q ss_pred eccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChh
Q 007363 448 GEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHG 487 (606)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~ 487 (606)
||.+++.+.||.++|.|.+...+..++++.|+.++....+
T Consensus 312 ge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 312 GELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred chHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 9999999999999999999999999999999999987744
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.88 E-value=2.5e-08 Score=102.75 Aligned_cols=55 Identities=29% Similarity=0.547 Sum_probs=50.7
Q ss_pred hhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLI 302 (606)
Q Consensus 248 ~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~ 302 (606)
..+.+|+||+++|+|||||||+.|.|..+++++++++++|+.++++.++.+...+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999988876543
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.66 E-value=2e-08 Score=107.30 Aligned_cols=115 Identities=16% Similarity=0.278 Sum_probs=101.7
Q ss_pred HHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEeccccccCCCcccEEEEc
Q 007363 387 DLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK 465 (606)
Q Consensus 387 ~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~ 465 (606)
.++..+-..+......||+.+++|||..+++|+|++|.++-... .+|+..+++.++.||.+|+...+++++|..|+.|+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~Av 578 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAV 578 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEE
Confidence 45566667788899999999999999999999999999987764 44555578999999999999999999999999999
Q ss_pred ccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHH
Q 007363 466 RLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVK 501 (606)
Q Consensus 466 ~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~ 501 (606)
.++++.+||..-|.-+..+||....++.+.+.++.-
T Consensus 579 RdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~ 614 (1158)
T KOG2968|consen 579 RDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKIL 614 (1158)
T ss_pred eehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 999999999999999999999988888777776653
No 32
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.59 E-value=2e-07 Score=100.00 Aligned_cols=155 Identities=13% Similarity=0.130 Sum_probs=89.3
Q ss_pred cccccCceEEcCCChhHH---------hHHHHHHHHHHHHHhhcceeeeeecCC--Cccchhh-hHHHHHHHHhhheeee
Q 007363 44 GHLRLKKYVIAPYDYRYR---------WWQTFLVVLVVYSAWASPFELAFRKAA--TGSLLIV-DLVVDFFFAADIIFTF 111 (606)
Q Consensus 44 ~~~~~~~~ii~P~s~~~~---------~W~~~~~~l~~~~~~~~p~~~~f~~~~--~~~~~~~-~~~~~~~f~~Di~l~f 111 (606)
-+..|..++|.|.++|+. .+|.++++.++++++.+..+..-.... ...+..+ ++++..+|++|+.++.
T Consensus 1098 ~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKV 1177 (1956)
T KOG2302|consen 1098 LRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKV 1177 (1956)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHH
Confidence 345567899999998874 577788888999998887764222221 2233334 4899999999998876
Q ss_pred EE-EEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHHhHh
Q 007363 112 FV-AYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEK 190 (606)
Q Consensus 112 ~t-~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~~ 190 (606)
.. +.+-. -..|+++.|+.+|.+-++-..+-+...-.+....+.++++|.+|++|-+|.+|.+++...
T Consensus 1178 VALGl~fg------------e~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSra~g 1245 (1956)
T KOG2302|consen 1178 VALGLYFG------------EQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISRAPG 1245 (1956)
T ss_pred Hhhhhccc------------hHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence 53 21111 178999889999976544322211111111111144555566666666666666655443
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 007363 191 DIRFTYFITRLSKLICVTLF 210 (606)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~ 210 (606)
..-....+...++-+..+++
T Consensus 1246 lklVveTL~sSLkpIgnIvl 1265 (1956)
T KOG2302|consen 1246 LKLVVETLISSLKPIGNIVL 1265 (1956)
T ss_pred HHHHHHHHHhccccHHHHHH
Confidence 33233333344444444433
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.49 E-value=2.4e-06 Score=85.63 Aligned_cols=91 Identities=13% Similarity=0.262 Sum_probs=76.0
Q ss_pred hhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhC
Q 007363 247 WLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKN 326 (606)
Q Consensus 247 ~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 326 (606)
...|..|+|...+|+.++||||++|.|..++.++++.-++|.++.|.+++.++--+ +..+--..+++||-+.
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMDT 356 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999998886544 3444455788899888
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 007363 327 RLPEGLREQMLAHMQLRFK 345 (606)
Q Consensus 327 ~i~~~l~~rv~~y~~~~~~ 345 (606)
++.+++++-..+-++..|.
T Consensus 357 qLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888887776666665554
No 34
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.49 E-value=1.3e-07 Score=72.18 Aligned_cols=46 Identities=20% Similarity=0.513 Sum_probs=41.2
Q ss_pred ccccccCceEEcCCChhHHhHHHHHHHHHHHHHhhcceeeeeecCC
Q 007363 43 EGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA 88 (606)
Q Consensus 43 ~~~~~~~~~ii~P~s~~~~~W~~~~~~l~~~~~~~~p~~~~f~~~~ 88 (606)
++..+.+.|+|||+|.++.+||++++++++++++++|+.++|..+.
T Consensus 29 ~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 29 ERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE 74 (77)
T ss_pred HHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence 4455677899999999999999999999999999999999997654
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.26 E-value=2.3e-06 Score=91.94 Aligned_cols=115 Identities=13% Similarity=0.247 Sum_probs=99.4
Q ss_pred HHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEec-ccc---ccCCC---cccE
Q 007363 390 AQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGE-IGV---IFNIP---QPFT 461 (606)
Q Consensus 390 ~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe-~~~---l~~~~---~~~~ 461 (606)
-+++.+++...+..|++|++.|++++.+|.+.+|..+|+. ..+|++..+..+.+|+.|-- .++ +.+.| +...
T Consensus 109 l~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~ 188 (1158)
T KOG2968|consen 109 LELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIA 188 (1158)
T ss_pred eeechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceee
Confidence 3455888899999999999999999999999999999987 55788889999999976653 333 44544 5778
Q ss_pred EEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 462 VRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 462 v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
++|.++|.+..++...|.+...++|+-...+++.++-|+++..
T Consensus 189 akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~vT 231 (1158)
T KOG2968|consen 189 AKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQRVT 231 (1158)
T ss_pred eeeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998854
No 36
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.18 E-value=8.1e-06 Score=82.13 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCC-----CceeccccCCcccCcchhhhhhHhHhhhhhhhcccccc--cccCCchh
Q 007363 204 LICVTLFAVHSAGCFYFYLAAHHKIPE-----NTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGD--LHAVNTGE 276 (606)
Q Consensus 204 l~~~~~~~~h~~ac~~~~i~~~~~~~~-----~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGd--i~p~t~~e 276 (606)
++...++..-++|++||+++....+-. ..|-. -......+..||+|++.|+||+|||. ++|..+..
T Consensus 41 f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~-------Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a 113 (336)
T PF01007_consen 41 FVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP-------CVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYA 113 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T-------SECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC-------ceecccchhhheeEEEEEEEEeccCCcccCCCcchh
Confidence 334455556678999999886433211 11110 01223579999999999999999998 67888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007363 277 KVFNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (606)
Q Consensus 277 ~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 307 (606)
.++.++-+++|+++.|+++|.+.+-+....+
T Consensus 114 ~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 114 IFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999877765543
No 37
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=97.95 E-value=1e-05 Score=60.30 Aligned_cols=40 Identities=38% Similarity=0.651 Sum_probs=34.4
Q ss_pred CcEEEEccCCCCCCCCCCCCCccEEeCcccHHHHHHHhccccc
Q 007363 561 PVRVIIHGHPPKTNTKKDETSGKLIHLPESIEDLFKLAGMSVA 603 (606)
Q Consensus 561 ~~~~~i~~~~~~~~~~~~~~~gkl~~~p~~~~~l~~~~~~~~~ 603 (606)
|+||+++..++.. . +...||++++|+|+++|+++|++||.
T Consensus 1 ~~RVtI~~~~~~~-~--~~~~GKvi~lP~SleeLl~ia~~kfg 40 (69)
T PF11834_consen 1 PKRVTIFPNHPPE-K--GRRAGKVIWLPDSLEELLKIASEKFG 40 (69)
T ss_pred CcEEEEecCCCCc-c--cCcCCEEEEcCccHHHHHHHHHHHhC
Confidence 6899999998821 1 55679999999999999999999996
No 38
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.94 E-value=4.2e-05 Score=73.56 Aligned_cols=59 Identities=22% Similarity=0.435 Sum_probs=47.0
Q ss_pred hhhhHhHhhhhhhhcccccccccCC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVN--------TGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t--------~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 307 (606)
.|++|+|++++|+||+|+||.++-- +.-+.++.+++++|+.+++-.++.+.-.+...+.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6999999999999999999988653 2335778899999999988888777655554433
No 39
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.88 E-value=6.2e-05 Score=80.15 Aligned_cols=57 Identities=26% Similarity=0.628 Sum_probs=53.3
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHS 305 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~ 305 (606)
.+..|+|++++++||+|||++.|.|..+++++|+..++|+-++.++++.++..+...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999999999999999999998877654
No 40
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.85 E-value=0.00036 Score=64.44 Aligned_cols=110 Identities=6% Similarity=0.065 Sum_probs=85.1
Q ss_pred HHHHHHHhccceecCCCceE-EecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcc
Q 007363 388 LIAQMVSEMKAEYFPPKVEI-ILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKR 466 (606)
Q Consensus 388 ~l~~l~~~~~~~~~~~ge~I-~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~ 466 (606)
....+....++..+++|..+ +........++++.+|.|.+. ..|| ..+.+..+...||-...+.+....+..+|.+
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~ 90 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEG 90 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eEEEeccCCeEeecccccCCCCceEEEEEcC
Confidence 44566777888999999997 444444467999999999994 3444 5778888999999877777766678999999
Q ss_pred cEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHH
Q 007363 467 LSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVK 501 (606)
Q Consensus 467 ~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~ 501 (606)
+|+++.++.++|.++++++. +.+.+...+..++.
T Consensus 91 ~c~~~~i~~~~~~~iie~~~-LW~~~~~~l~~~~~ 124 (207)
T PRK11832 91 NCTGYHLPAKQTITLIEQNQ-LWRDAFYWLAWQNR 124 (207)
T ss_pred ccEEEEeeHHHHHHHHHHhc-hHHHHHHHHHHHHH
Confidence 99999999999999999884 55555555544443
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00015 Score=69.83 Aligned_cols=53 Identities=28% Similarity=0.532 Sum_probs=46.4
Q ss_pred hhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 247 WLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMT 299 (606)
Q Consensus 247 ~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~ 299 (606)
--++.-||||+.+.+||+|||..+|.|..+++|+|+..++|+-+.-.++..++
T Consensus 78 qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 78 QWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred ccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 34688999999999999999999999999999999999999877666665554
No 42
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.51 E-value=0.003 Score=54.58 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHh-ccceecCCCceEEecCC-CCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccc-----cC
Q 007363 383 GVSVDLIAQMVSE-MKAEYFPPKVEIILQNE-IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVI-----FN 455 (606)
Q Consensus 383 ~~~~~~l~~l~~~-~~~~~~~~ge~I~~~g~-~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l-----~~ 455 (606)
+.|....++++.. .+.....+|+.-.-||. +.+.+-++++|.+.|.. +|+ .+..+.|.++..-.... .+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~--~g~--fLH~I~p~qFlDSPEW~s~~~s~~ 89 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC--DGR--FLHYIYPYQFLDSPEWESLRPSED 89 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE--CCE--eeEeecccccccChhhhccccCCC
Confidence 5688888888887 66788999999988884 45789999999999986 554 56677777777633322 24
Q ss_pred CCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHH
Q 007363 456 IPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFI 497 (606)
Q Consensus 456 ~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~ 497 (606)
....+|+.|.++|..+.-+|+.+..++.++|-+...+-..+.
T Consensus 90 ~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liG 131 (153)
T PF04831_consen 90 DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIG 131 (153)
T ss_pred CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHH
Confidence 557899999999999999999999999999876655544443
No 43
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00012 Score=74.75 Aligned_cols=51 Identities=24% Similarity=0.420 Sum_probs=41.7
Q ss_pred hhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300 (606)
Q Consensus 250 Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~ 300 (606)
.+.|+||.++|++||||||.+|.-+...+..++++.+..++..--+..++.
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~ 268 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQ 268 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHH
Confidence 566999999999999999999999999988888777777766655555543
No 44
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.0017 Score=64.46 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCC-----CceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccC--Cch
Q 007363 203 KLICVTLFAVHSAGCFYFYLAAHHKIPE-----NTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAV--NTG 275 (606)
Q Consensus 203 ~l~~~~~~~~h~~ac~~~~i~~~~~~~~-----~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~--t~~ 275 (606)
.+...+++...++|++||+++...++-+ .+|.. -......+..||-|++-|=||+|||--.+. =+.
T Consensus 68 iF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tp-------CV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~ 140 (400)
T KOG3827|consen 68 IFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTP-------CVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPE 140 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCc-------ceeeccchhhhheeeeeeeeeeeccccccCccChH
Confidence 3334444445568999999998544321 11211 122345788999999999999999975443 466
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007363 276 EKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (606)
Q Consensus 276 e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 307 (606)
..+..++-+++|+++-++++|.+.+-++...+
T Consensus 141 aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkK 172 (400)
T KOG3827|consen 141 AIFLLVLQSILGVIINAFMVGAIFAKIARPKK 172 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 77888888999999999999998877765443
No 45
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=97.24 E-value=0.0008 Score=70.49 Aligned_cols=112 Identities=10% Similarity=0.098 Sum_probs=86.8
Q ss_pred HHhHhHhhhhccccCCCHHHHHHHHHhccceec-CCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEE
Q 007363 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYF-PPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 369 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~-~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 447 (606)
+...+++.+.|.|.+++-...++||..|....+ .+|.+|...|+.-++.|+|+.|.|+|.. ++|+. ..+.-|+.|
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~-PdGk~---e~l~mGnSF 352 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK-PDGKR---EELKMGNSF 352 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec-CCCce---EEeeccccc
Confidence 445678889999999999999999999887554 7899999999999999999999999987 56653 357779999
Q ss_pred eccccccCCCcccEEE-EcccEEEEEeCHHHHHhhhcc
Q 007363 448 GEIGVIFNIPQPFTVR-TKRLSQVIRLSHHHLKQMVPI 484 (606)
Q Consensus 448 Ge~~~l~~~~~~~~v~-a~~~~~l~~l~~~~f~~ll~~ 484 (606)
|...-...+-..-.++ -+.+|+..++...||-.++..
T Consensus 353 G~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 353 GAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 9554332221111222 347899999999999888743
No 46
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.23 E-value=0.0095 Score=68.10 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=32.1
Q ss_pred CChhHHhHHHHHHHHHHHHHhhcceeee--------eecCCCccchhhhHHHHHHHHhhheee
Q 007363 56 YDYRYRWWQTFLVVLVVYSAWASPFELA--------FRKAATGSLLIVDLVVDFFFAADIIFT 110 (606)
Q Consensus 56 ~s~~~~~W~~~~~~l~~~~~~~~p~~~~--------f~~~~~~~~~~~~~~~~~~f~~Di~l~ 110 (606)
.+.+....+++++++++|.++--..++. +..-....|.++|++..++.+.-+++-
T Consensus 1171 ~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLY 1233 (1634)
T PLN03223 1171 EDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMW 1233 (1634)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666655433321 111124678889987777766666553
No 47
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.91 E-value=0.0057 Score=72.91 Aligned_cols=166 Identities=14% Similarity=0.186 Sum_probs=93.0
Q ss_pred cchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcCccCCCceechh
Q 007363 91 SLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFL 170 (606)
Q Consensus 91 ~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l 170 (606)
.+.+.+.++..+|..|+.+....- ++ ..|+.++|+++|.+-+. +.++... .. ....+.++
T Consensus 474 ~l~~~~~vF~~lF~~Em~~ki~al--~~-------------~~yF~~~~n~fD~~iv~-l~~~~~~-~~---~~~g~svL 533 (1592)
T KOG2301|consen 474 LLYLGNVVFTGLFTVEMILKIYAL--GP-------------RNYFRRGWNIFDLIIVL-LSLLELL-LK---NVYGLSVL 533 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--Cc-------------HHHHhhhcchheEEEEe-hhhHHhc-cc---chHHHHHH
Confidence 466778899999999999887531 22 67888889999999888 5444333 11 12456677
Q ss_pred hhhhhhHHHhHHHHHHHhHhhhhH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccCCCCceeccccCCcccCcchh
Q 007363 171 NLLRLWRLRRVGELFTRLEKDIRF-TYFITRLSKLICVTLFAV-HSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWL 248 (606)
Q Consensus 171 ~llrllRl~r~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~-h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~ 248 (606)
|.+|++|++|+.+....+++.... ......+..+.+++++++ -++.+...+++..+... ..| ...+.
T Consensus 534 r~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~-~~~----------~~~~~ 602 (1592)
T KOG2301|consen 534 RSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLH-CDI----------HWHFT 602 (1592)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCC-CCC----------ccchh
Confidence 888888888877777666654332 112233333333333322 23344455554432222 111 12334
Q ss_pred hhhhHhHhhhhhhhcccccccc------cCCchhHHHHHHHHHHHH
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLH------AVNTGEKVFNMLYMLFNI 288 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~------p~t~~e~i~~i~~~i~g~ 288 (606)
.+..|+-+.+. +|+-++-|+. .....-.++-+.++++|-
T Consensus 603 ~fp~sfl~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi~~~l~gn 647 (1592)
T KOG2301|consen 603 DFPHSFLSVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFIAYFLFGN 647 (1592)
T ss_pred hCHHHHHHHHH-HcCCchHHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 56777777777 6655554422 112333444555555553
No 48
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.84 E-value=0.0033 Score=74.82 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHhhcceeeeeecCC-CccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccc
Q 007363 62 WWQTFLVVLVVYSAWASPFELAFRKAA-TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWF 140 (606)
Q Consensus 62 ~W~~~~~~l~~~~~~~~p~~~~f~~~~-~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f 140 (606)
.|+..++++++++.+.+-.+..-.... ...+..++.++.++|.+|.+++...- -...|++.+|+
T Consensus 1158 ~F~~~i~~li~ln~i~l~~~~~~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA~---------------~~~~yf~~~WN 1222 (1592)
T KOG2301|consen 1158 AFDYLIMLLIFLNTIIMMVETYDQSDTYTAILTILNAVFIVLFTIECILKVIAL---------------RFRGYFTSAWN 1222 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------hhhHhccccch
Confidence 367777777777776655443222211 33467788999999999999987532 12679999999
Q ss_pred cccccccchHHH
Q 007363 141 TMDVASTLPFQF 152 (606)
Q Consensus 141 ~iDlls~iP~~~ 152 (606)
.+|++.++-..+
T Consensus 1223 ~FDfvvvIlSIv 1234 (1592)
T KOG2301|consen 1223 VFDFVVTILSIV 1234 (1592)
T ss_pred heEeeeeeHhHH
Confidence 999998876543
No 49
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.19 E-value=0.15 Score=56.48 Aligned_cols=102 Identities=14% Similarity=0.242 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHhhcceeeeee-----cCCCccchhhhHHHHHHHHhhheeeeEE-EEEeCCCcEEEecHhHHHHHhh
Q 007363 62 WWQTFLVVLVVYSAWASPFELAFR-----KAATGSLLIVDLVVDFFFAADIIFTFFV-AYLDKSTYLLVDDHKKIALRYV 135 (606)
Q Consensus 62 ~W~~~~~~l~~~~~~~~p~~~~f~-----~~~~~~~~~~~~~~~~~f~~Di~l~f~t-~y~~~~~g~~i~~~~~i~~~Yl 135 (606)
+++.+.+++++++++.+-.+-.-+ .+....+..+|-++-++|+++|+++... +.+.+ |-|+
T Consensus 80 wfe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~kmvalgifgk-------------kcyl 146 (1956)
T KOG2302|consen 80 WFECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIFGK-------------KCYL 146 (1956)
T ss_pred HHHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------cccc
Confidence 567777778888887754432211 2224557889999999999999998753 32222 6788
Q ss_pred ccccccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHh
Q 007363 136 TRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRR 180 (606)
Q Consensus 136 ~~~~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r 180 (606)
-..|+-+|++.++.-.+-+.+-..+ ..+..+|..|++|-+|
T Consensus 147 gdtwnrldffiv~agm~eysldlqn----vslsairtvrvlrplr 187 (1956)
T KOG2302|consen 147 GDTWNRLDFFIVMAGMVEYSLDLQN----VSLSAIRTVRVLRPLR 187 (1956)
T ss_pred cCchhhhhhhheehhhhhhcccccc----cchhhhhhhhhhhhhh
Confidence 8779999998776554433221111 3344455555544443
No 50
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.88 E-value=0.012 Score=62.05 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=75.7
Q ss_pred hHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEecccc
Q 007363 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGV 452 (606)
Q Consensus 373 ~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~ 452 (606)
..|.+...|+++-...++.+|...+.+.++.+.++++.|+.+.+.|++++|.|-|. |. .+-+-.+||..
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----gq-----i~mp~~~fgkr-- 105 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----GQ-----IYMPYGCFGKR-- 105 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----cc-----eecCccccccc--
Confidence 36778889999999999999999999999999999999999999999999999663 22 34566678864
Q ss_pred ccCCCcccEEEEcccEEEEEeC
Q 007363 453 IFNIPQPFTVRTKRLSQVIRLS 474 (606)
Q Consensus 453 l~~~~~~~~v~a~~~~~l~~l~ 474 (606)
+|+.|..++-.+..++.++++
T Consensus 106 -~g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 106 -TGQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred -cccccccceeeecccceeeee
Confidence 577788888888888888884
No 51
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.0035 Score=66.66 Aligned_cols=48 Identities=23% Similarity=0.532 Sum_probs=41.4
Q ss_pred hhhhhHhHhhhhhhhcccccccccCCchhH--------HHHHHHHHHHHHHHHHHH
Q 007363 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEK--------VFNMLYMLFNIGLTAYII 295 (606)
Q Consensus 248 ~~Y~~sly~a~~tlttvGyGdi~p~t~~e~--------i~~i~~~i~g~~~~a~~i 295 (606)
-.|+.|+||+++++|||||||++|.+...+ ....++.++|...++...
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 368899999999999999999999998866 578888888888777665
No 52
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=93.48 E-value=0.7 Score=42.75 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=24.8
Q ss_pred hhhhhhhHHHhHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007363 170 LNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAA 224 (606)
Q Consensus 170 l~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~i~~ 224 (606)
++++|++|+.|+.++++..+..........+..+.+..++++.+++.+.+..++.
T Consensus 62 ~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 116 (200)
T PF00520_consen 62 LRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGY 116 (200)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3444444444444444444443333333444444444444444444444444443
No 53
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.34 E-value=2.4 Score=49.47 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=50.1
Q ss_pred CChhHHhHHHHHHHHHHHHHhhcceeeeeecCCCccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhh
Q 007363 56 YDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYV 135 (606)
Q Consensus 56 ~s~~~~~W~~~~~~l~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl 135 (606)
.++...+|-.++..+.++.++...+.+-|...+.. +.++-++-.+-+++|-+=+.+.. +. |.+ ++++ +-|+
T Consensus 789 sAPIvkFw~~~l~yi~FL~lftYvlLv~~~~~Ps~-~Ew~~~~~iftl~~E~vRq~~~s---e~-~~l---~~kv-~v~f 859 (1381)
T KOG3614|consen 789 SAPIVKFWLNVLSYIAFLLLFTYVLLVDFQPSPSM-WEWILFAWIFTLFLEEVRQIFIS---ES-GLL---PQKV-RVYF 859 (1381)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHheeccCCCCCc-cchhHHHHHHHHHHHHHHHHhcC---CC-cch---hhHH-HHHH
Confidence 35566778777777777777666666666655422 22222222333445555444333 21 211 2233 4466
Q ss_pred ccccccccccccchHHHH
Q 007363 136 TRLWFTMDVASTLPFQFI 153 (606)
Q Consensus 136 ~~~~f~iDlls~iP~~~~ 153 (606)
...|+.+|+++++-|.+-
T Consensus 860 ~d~wN~~d~~ai~~F~vG 877 (1381)
T KOG3614|consen 860 ADFWNLIDLLAILLFLVG 877 (1381)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 666999999998866543
No 54
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.79 E-value=7.4 Score=43.20 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhh--hcccccccccC--C-
Q 007363 199 TRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTL--TTVGYGDLHAV--N- 273 (606)
Q Consensus 199 ~~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tl--ttvGyGdi~p~--t- 273 (606)
..++++.++.++++.=+|-.+|.+....+.++. -..+ + ...+...+-.+++.-++.|+ .|+||||.... +
T Consensus 541 ~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~-~~~~---~-~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~ 615 (782)
T KOG3676|consen 541 GDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSS-PNDK---N-VESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTD 615 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc-cccc---c-ccccccCChhhHHHHHHHHHHHHhhhhhhhhhccccc
Confidence 345555555555555566677766643221110 0000 0 01111112223344444444 68999997543 3
Q ss_pred --chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHhhhCCCCHHHHHH
Q 007363 274 --TGE-KVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRT-LFMRNAINEILRYGSKNRLPEGLREQ 335 (606)
Q Consensus 274 --~~e-~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~-~~~~~~~~~~~~~m~~~~i~~~l~~r 335 (606)
... .++.++++++.++++-++|+.|++-.....+.. ++.+.+...+. -|-.+.+|+.++.+
T Consensus 616 ~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~i-L~lErs~p~~~r~~ 680 (782)
T KOG3676|consen 616 YPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATI-LMLERSLPPALRKR 680 (782)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH-HHHHhcCCHHHHHH
Confidence 223 334555555667778888888887776665555 44544443332 34567788877766
No 55
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=90.53 E-value=0.42 Score=42.21 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=45.3
Q ss_pred chhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007363 246 IWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHS 305 (606)
Q Consensus 246 ~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~ 305 (606)
.......++|+++.+++. +-++..|.+...|++.+++.++++++.+...+++++.+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445678899999888876 44678999999999999999999999999999999988764
No 56
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=89.40 E-value=9.9 Score=43.68 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 007363 200 RLSKLICVTLFAVHSAGCFYFYLAA 224 (606)
Q Consensus 200 ~~~~l~~~~~~~~h~~ac~~~~i~~ 224 (606)
.++++++++++++--+|+.++.+..
T Consensus 507 dl~~F~~i~~v~l~aF~~~~~~l~~ 531 (743)
T TIGR00870 507 DILRFLFIYAVVLFGFACGLNQLYQ 531 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777776666667777776653
No 57
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=89.37 E-value=3 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=13.1
Q ss_pred CccchhhhHHHHHHHHhhheeee
Q 007363 89 TGSLLIVDLVVDFFFAADIIFTF 111 (606)
Q Consensus 89 ~~~~~~~~~~~~~~f~~Di~l~f 111 (606)
...|.++|++..++.++=+++.+
T Consensus 241 ~~~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 241 KSFWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHH
Confidence 34566777766655555444444
No 58
>COG4709 Predicted membrane protein [Function unknown]
Probab=86.63 E-value=3.8 Score=37.00 Aligned_cols=74 Identities=26% Similarity=0.324 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhh---cccHHHHHhhC--CHHHHHHHHHHHhHhHhhhhccccCCCHHH
Q 007363 314 NAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA---ELQQEEVLEDL--PKAIRSSISQHLFRGTVEKTYLFQGVSVDL 388 (606)
Q Consensus 314 ~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~---~~~~~~~l~~L--p~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~ 388 (606)
+-+++++.|+ .++|++.++++..||+-+++.. +.+|+|+.++| |+++-.|+..+.-.+-.+.-|-+++.+...
T Consensus 5 efL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 5 EFLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 4467888887 6899999999999998888766 77799999987 666777776666555555555555555543
Q ss_pred H
Q 007363 389 I 389 (606)
Q Consensus 389 l 389 (606)
+
T Consensus 83 i 83 (195)
T COG4709 83 I 83 (195)
T ss_pred H
Confidence 3
No 59
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.10 E-value=73 Score=35.98 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=35.1
Q ss_pred hhCCHHHHHHHHHHHhHhHh-----hhhccccCCCHHHHHHHHHhccc
Q 007363 356 EDLPKAIRSSISQHLFRGTV-----EKTYLFQGVSVDLIAQMVSEMKA 398 (606)
Q Consensus 356 ~~Lp~~Lr~~i~~~~~~~~l-----~~~~~F~~~~~~~l~~l~~~~~~ 398 (606)
++||+.||+.+..+...+.. ..-.++++++++..++|+.++-.
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 47999999999988866554 45678899999999999888743
No 60
>PLN03223 Polycystin cation channel protein; Provisional
Probab=84.71 E-value=20 Score=42.43 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.0
Q ss_pred HHhhccccccccccccch
Q 007363 132 LRYVTRLWFTMDVASTLP 149 (606)
Q Consensus 132 ~~Yl~~~~f~iDlls~iP 149 (606)
+.|++++|+++|++.++-
T Consensus 1208 laYFKSfWNwLEIl~IlL 1225 (1634)
T PLN03223 1208 LAYFLSGWNYVDFASIGL 1225 (1634)
T ss_pred hhHhccchHHHHHHHHHH
Confidence 689999999999976543
No 61
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=83.61 E-value=81 Score=36.75 Aligned_cols=41 Identities=39% Similarity=0.537 Sum_probs=31.9
Q ss_pred EEEEccCCC-CCCCCCCCCCccEEeCcccHHHHHHHhccccc
Q 007363 563 RVIIHGHPP-KTNTKKDETSGKLIHLPESIEDLFKLAGMSVA 603 (606)
Q Consensus 563 ~~~i~~~~~-~~~~~~~~~~gkl~~~p~~~~~l~~~~~~~~~ 603 (606)
++.+...|+ ..+.......|+++.+|++++|+-++|++|+.
T Consensus 744 ~~~~~~~~p~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~ 785 (823)
T PLN03192 744 RVSIYKGHPLLRNERCCNEAGKLINLPPSLEELKAIAGEKLG 785 (823)
T ss_pred eEEEecCCCcccccccccccCeEEeCCccHHHHHHHHHHHhC
Confidence 667777777 33333335799999999999999999999984
No 62
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=82.42 E-value=7.1 Score=29.12 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=42.7
Q ss_pred eecCCCceEEecCCCCC-eEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 399 EYFPPKVEIILQNEIPT-DLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 399 ~~~~~ge~I~~~g~~~~-~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
..++||+..-..-.... .+++|++|++.+.. +|+ ...+++|+.+=-- .+.+..+....-+++.++.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~i~---~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV--DGE---RVELKPGDAIYIP---PGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE--TTE---EEEEETTEEEEEE---TTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE--ccE---EeEccCCEEEEEC---CCCeEEEEECCCCCEEEEEE
Confidence 46788887666555555 89999999999984 554 3468888754321 24445444444455655543
No 63
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.67 E-value=29 Score=39.67 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=13.6
Q ss_pred ccchhhhHHHHHHHHhhheeee
Q 007363 90 GSLLIVDLVVDFFFAADIIFTF 111 (606)
Q Consensus 90 ~~~~~~~~~~~~~f~~Di~l~f 111 (606)
..|.++|+++.++.++=++++.
T Consensus 498 s~wN~ld~~i~~ls~~~~~~~~ 519 (798)
T KOG3599|consen 498 SKWNWLDLAIVLLSVVLLVLMI 519 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3466677776666666665554
No 64
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=79.33 E-value=4.5 Score=43.24 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHH
Q 007363 207 VTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLF 286 (606)
Q Consensus 207 ~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~ 286 (606)
.+++.+|++|...|++....+.. .--.+. .-.++...-....|+||+-..+..-|-|+-+|.+-..+++.+++.-+
T Consensus 575 lv~~SVhvVal~lYlLDrfSPFg-RFk~~d---s~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGF 650 (993)
T KOG4440|consen 575 LVGLSVHVVALMLYLLDRFSPFG-RFKVND---SEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGF 650 (993)
T ss_pred HHHHHHHHHHHHHHHHHhcCccc-ceeecc---CccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhh
Confidence 44566899999999887532211 101110 01222333467789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007363 287 NIGLTAYIIGNMTNLIV 303 (606)
Q Consensus 287 g~~~~a~~i~~i~~~~~ 303 (606)
++++.|-..+++++.+.
T Consensus 651 aMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 651 AMIIVASYTANLAAFLV 667 (993)
T ss_pred heeeehhhhhhhhhhee
Confidence 98888888888887664
No 65
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.91 E-value=9.2 Score=42.74 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=14.9
Q ss_pred HHhhccccccccccccchH
Q 007363 132 LRYVTRLWFTMDVASTLPF 150 (606)
Q Consensus 132 ~~Yl~~~~f~iDlls~iP~ 150 (606)
+.|++.+|.++|++...-+
T Consensus 411 ~~y~~~~Wn~lDf~m~siy 429 (822)
T KOG3609|consen 411 DGYLAFWWNWLDFAMISIY 429 (822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7899988999998765443
No 66
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=74.34 E-value=19 Score=33.03 Aligned_cols=55 Identities=33% Similarity=0.519 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhh---cccHHHHHhhC--CHHHHHHHHHHH
Q 007363 314 NAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA---ELQQEEVLEDL--PKAIRSSISQHL 370 (606)
Q Consensus 314 ~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~---~~~~~~~l~~L--p~~Lr~~i~~~~ 370 (606)
+=+++++.+++ ++|++-++++.+||+-+++.. +.+|+++.++| |.++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 34677888885 699999999999999888765 67899999997 556666655443
No 67
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=65.08 E-value=87 Score=35.66 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=30.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 270 HAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (606)
Q Consensus 270 ~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~ 303 (606)
.|+.+..+++..++.++++++.|...+++++.+.
T Consensus 630 nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 630 NPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778899999999999999999999999988764
No 68
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.80 E-value=2.2e+02 Score=30.25 Aligned_cols=83 Identities=19% Similarity=0.380 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHhhCCHHHHHHHHHHH-----hHhHhhhhccccCCCHHHHHHHHHhccceecCC-----
Q 007363 334 EQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHL-----FRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPP----- 403 (606)
Q Consensus 334 ~rv~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~~-----~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~----- 403 (606)
+-++.|++|+ ..|..|+..+..-. ..+....-...+.+|+....+++...+..+.++
T Consensus 250 DGiK~YM~~R-------------kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~ 316 (536)
T KOG0500|consen 250 DGIKQYMRYR-------------KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQ 316 (536)
T ss_pred HHHHHHHHHh-------------cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHH
Confidence 4466676654 67888887766543 334455566777888888888877765433322
Q ss_pred --------------CceEEecCCCCCeEEEEEEcEEE--EEEeeCCc
Q 007363 404 --------------KVEIILQNEIPTDLYIVVSGAVD--VLIYKNGA 434 (606)
Q Consensus 404 --------------ge~I~~~g~~~~~ly~I~~G~v~--v~~~~~g~ 434 (606)
...++..|| |+..+|.+. .+.-+.|+
T Consensus 317 ~ce~~lL~elVLklk~qvfSPgD-----yICrKGdvgkEMyIVk~G~ 358 (536)
T KOG0500|consen 317 DCEAGLLVELVLKLKPQVFSPGD-----YICRKGDVGKEMYIVKEGK 358 (536)
T ss_pred hcchhHHHHHHHHhcceeeCCCC-----eEEecCcccceEEEEEccE
Confidence 234566665 788999883 23334554
No 69
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=59.80 E-value=45 Score=28.50 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=40.9
Q ss_pred cceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 397 ~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
....++||...-..-.....+++|++|++++....+|+ ...+++||.+---+ +.+..+. +.++++++.+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~---~~~L~aGD~i~~~~---~~~H~~~--N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE---VHPIRPGTMYALDK---HDRHYLR--AGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE---EEEeCCCeEEEECC---CCcEEEE--cCCCEEEEEE
Confidence 34567888755332111236999999999987212244 35789999875332 3343333 3377777665
No 70
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=55.68 E-value=16 Score=39.02 Aligned_cols=55 Identities=13% Similarity=0.343 Sum_probs=47.2
Q ss_pred hhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (606)
Q Consensus 248 ~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~ 303 (606)
.....|+||++..+..-| -||.|.+..+++..-++-++-+++.+-..+++++.+.
T Consensus 594 FgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 594 FGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred chhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 356789999999998888 6899999999999999988888888777888877665
No 71
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=55.27 E-value=8.9 Score=39.53 Aligned_cols=43 Identities=14% Similarity=0.334 Sum_probs=38.6
Q ss_pred CCCEEeccccccCCCcccEEEEcc-cEEEEEeCHHHHHhhhccC
Q 007363 443 SADMAGEIGVIFNIPQPFTVRTKR-LSQVIRLSHHHLKQMVPID 485 (606)
Q Consensus 443 ~G~~fGe~~~l~~~~~~~~v~a~~-~~~l~~l~~~~f~~ll~~~ 485 (606)
+||-||..++....||.+++...+ +|.+++.++.+|.+++++.
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 599999999999999999987765 6999999999999998765
No 72
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=54.63 E-value=32 Score=26.25 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=23.2
Q ss_pred CeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 415 TDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 415 ~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
+.+.+|++|+|.+.. .+|. ...+++||.|=
T Consensus 26 ~E~~~vleG~v~it~-~~G~---~~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITD-EDGE---TVTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEE-TTTE---EEEEETTEEEE
T ss_pred CEEEEEEEeEEEEEE-CCCC---EEEEcCCcEEE
Confidence 678899999999986 3554 25789998764
No 73
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=54.15 E-value=1.8e+02 Score=33.44 Aligned_cols=16 Identities=25% Similarity=0.754 Sum_probs=12.5
Q ss_pred HHhhcccccccccccc
Q 007363 132 LRYVTRLWFTMDVAST 147 (606)
Q Consensus 132 ~~Yl~~~~f~iDlls~ 147 (606)
..|++..|.++|++..
T Consensus 416 ~~y~~~~wn~~d~~~~ 431 (743)
T TIGR00870 416 FEYIHQLWNILDFGMN 431 (743)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689988999998443
No 74
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=53.26 E-value=40 Score=29.54 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=47.3
Q ss_pred hccceecCCCceEEecCCC-CCeEEEEEEcEEEEEEee-CCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEE
Q 007363 395 EMKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (606)
Q Consensus 395 ~~~~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (606)
.+....+.||...-..-.. ...+++|++|+..+.... +|.+.....+++||.+=.-+ +.++.......+++.++.
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~---g~~H~~~n~~~~~~~~l~ 107 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQ---GHPHFQVNSGDENLEFVA 107 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECC---CCEEEEEcCCCCCEEEEE
Confidence 3445567888765544332 568999999999998633 34455667899999765322 223322222334566665
Q ss_pred eCHH
Q 007363 473 LSHH 476 (606)
Q Consensus 473 l~~~ 476 (606)
++-.
T Consensus 108 ~~~~ 111 (146)
T smart00835 108 FNTN 111 (146)
T ss_pred EecC
Confidence 5433
No 75
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=52.06 E-value=45 Score=35.18 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=21.3
Q ss_pred CccchhhhHHHHHHHHhhheeeeEEE
Q 007363 89 TGSLLIVDLVVDFFFAADIIFTFFVA 114 (606)
Q Consensus 89 ~~~~~~~~~~~~~~f~~Di~l~f~t~ 114 (606)
..++.++|++..+=|.+++++....+
T Consensus 272 k~pLNIIDllAIlPFYielll~~~~~ 297 (477)
T KOG3713|consen 272 KSPLNIIDLLAILPFYLELLLTLFGG 297 (477)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 45688999999999999998886654
No 76
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=51.55 E-value=54 Score=37.05 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=46.7
Q ss_pred hhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007363 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHS 305 (606)
Q Consensus 250 Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~ 305 (606)
...++|.++.++..-| ++..|.+...+++..++.+++.++.+...+++++++...
T Consensus 382 ~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~ 436 (656)
T KOG1052|consen 382 LLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVP 436 (656)
T ss_pred cccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3446777788788777 458999999999999999999999999999999988754
No 77
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=50.96 E-value=1.4e+02 Score=28.09 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=43.4
Q ss_pred HhhCCHHHHHHHHHHHhHhHhhhhccc-cCCCHHHHHHHHHhcccee--cCCCceEEecCCCCC
Q 007363 355 LEDLPKAIRSSISQHLFRGTVEKTYLF-QGVSVDLIAQMVSEMKAEY--FPPKVEIILQNEIPT 415 (606)
Q Consensus 355 l~~Lp~~Lr~~i~~~~~~~~l~~~~~F-~~~~~~~l~~l~~~~~~~~--~~~ge~I~~~g~~~~ 415 (606)
...+|+. ...+...+...++.-.-.| ...++...++......+.. +.+|+.|+++|+..+
T Consensus 145 ~~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 145 SSNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred ccCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 3456666 4455555656655544444 4677888888889999888 999999999999754
No 78
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=48.83 E-value=49 Score=27.43 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh-----------cccHHHHHhhCCHHHHHHHHHH
Q 007363 326 NRLPEGLREQMLAHMQLRFKTA-----------ELQQEEVLEDLPKAIRSSISQH 369 (606)
Q Consensus 326 ~~i~~~l~~rv~~y~~~~~~~~-----------~~~~~~~l~~Lp~~Lr~~i~~~ 369 (606)
.-+|++++..|..++.-.-... ..+...++..||+.||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 5689999999998876443322 2346789999999999998653
No 79
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=46.88 E-value=53 Score=28.05 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=32.9
Q ss_pred hccceecCCCceE-EecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEE
Q 007363 395 EMKAEYFPPKVEI-ILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 395 ~~~~~~~~~ge~I-~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 447 (606)
......++||+-+ .+.-...+.+|+|++|...+.. +|++ ..+++|+++
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~--~~~~---~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI--GGEE---VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE--CCEE---EEecCCCEE
Confidence 3455677888775 3333346889999999999987 4432 357788754
No 80
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=46.21 E-value=1e+02 Score=22.14 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHh
Q 007363 310 LFMRNAINEILRYG 323 (606)
Q Consensus 310 ~~~~~~~~~~~~~m 323 (606)
...+++++++-+.+
T Consensus 42 ~~~eqKLDrIIeLL 55 (58)
T PF13314_consen 42 DSMEQKLDRIIELL 55 (58)
T ss_pred hHHHHHHHHHHHHH
Confidence 35677777776654
No 81
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=44.22 E-value=1e+02 Score=32.07 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=42.2
Q ss_pred hhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 247 WLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (606)
Q Consensus 247 ~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~ 303 (606)
...|+.++-|++..+.+++-++..........+++++.+++++.+-+.+..++..++
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iq 154 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQ 154 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446889999999999888866653333444677778888888888888888776654
No 82
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=42.86 E-value=1.4e+02 Score=25.42 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=26.9
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhcccHHHHHhhCCH
Q 007363 316 INEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPK 360 (606)
Q Consensus 316 ~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~ 360 (606)
-.++.+|-.++-+-+-|+..--+++--.++++-..|.+++++.|.
T Consensus 62 r~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~eeEaeiMKdVPg 106 (146)
T KOG3300|consen 62 RLKIEDYAARNAILPILQAERDRRFLSELRKNLEEEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHccCCC
Confidence 344555555566666677655555555555555556677777664
No 83
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=40.71 E-value=71 Score=28.50 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=36.3
Q ss_pred CCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHH
Q 007363 414 PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHH 476 (606)
Q Consensus 414 ~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~ 476 (606)
.+.++++++|.+.+-...+|+. ....+++|++|=--. |.|. +-++..+|.++.+.+.
T Consensus 48 tdE~FyqleG~~~l~v~d~g~~-~~v~L~eGd~flvP~---gvpH--sP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEEGKR-EDVPIREGDIFLLPP---HVPH--SPQRPAGSIGLVIERK 104 (159)
T ss_pred CceEEEEEcceEEEEEEcCCcE-EEEEECCCCEEEeCC---CCCc--ccccCCCcEEEEEEeC
Confidence 6889999999999876555542 345789998875433 2222 2223456666666543
No 84
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=36.44 E-value=1.5e+02 Score=27.42 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=32.4
Q ss_pred cceecCCCceE---------EecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 397 KAEYFPPKVEI---------ILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 397 ~~~~~~~ge~I---------~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
-...++||... +++......+|++++|+..+.......+.....+.+|+.+=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 34566777743 33333345899999999988863221122345788988754
No 85
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=35.12 E-value=82 Score=19.99 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhCCCC-----HHHHHHHHHHH
Q 007363 315 AINEILRYGSKNRLP-----EGLREQMLAHM 340 (606)
Q Consensus 315 ~~~~~~~~m~~~~i~-----~~l~~rv~~y~ 340 (606)
++.+++++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788888888888 56888887764
No 86
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=35.10 E-value=6.4e+02 Score=27.62 Aligned_cols=50 Identities=12% Similarity=0.257 Sum_probs=34.5
Q ss_pred HhhCCHHHHHHHHHHHhHhH-----hhhhccccCCCHHHHHHHHHhccceecCCC
Q 007363 355 LEDLPKAIRSSISQHLFRGT-----VEKTYLFQGVSVDLIAQMVSEMKAEYFPPK 404 (606)
Q Consensus 355 l~~Lp~~Lr~~i~~~~~~~~-----l~~~~~F~~~~~~~l~~l~~~~~~~~~~~g 404 (606)
|.+.|+.|-+.++.++.... +..-..+.-++.+..+++|-++..+.|...
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEH 553 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEH 553 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccC
Confidence 45789999988888775432 223345566777777888888877776544
No 87
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.94 E-value=89 Score=26.67 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=38.1
Q ss_pred ccceecCCCceEEecCCC-CCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEecc
Q 007363 396 MKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~ 450 (606)
+....+.||..+-..-.+ .+...+|++|++++.. +|. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~--~g~---~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL--EGE---KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe--cCC---ceEecCCCEEEEC
Confidence 445678899888777666 6688999999999987 344 3478999988754
No 88
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=33.14 E-value=3.5e+02 Score=24.79 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=41.6
Q ss_pred cchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 007363 245 SIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIG 296 (606)
Q Consensus 245 ~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~ 296 (606)
++-..|.+=+|+|++.-+|-.-.|+.+.+..-|-....=.+++.++.+.+++
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4446799999999999999888999999988888877777777666665543
No 89
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=32.09 E-value=1.1e+02 Score=27.78 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=37.6
Q ss_pred CCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHH
Q 007363 412 EIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHH 476 (606)
Q Consensus 412 ~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~ 476 (606)
+..+.++++++|.+.+...++|+. ....+++|++|=--. |.|..- ++..+|..+.+.+.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~-~~v~L~eGd~fllP~---gvpHsP--~r~~~tv~LviE~~ 110 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKR-RDVPIREGEMFLLPP---HVPHSP--QREAGSIGLVIERK 110 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCce-eeEEECCCCEEEeCC---CCCcCC--ccCCCeEEEEEEeC
Confidence 456789999999998877555532 245789998875332 333322 23466777777543
No 90
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=31.79 E-value=57 Score=23.33 Aligned_cols=23 Identities=17% Similarity=0.483 Sum_probs=20.3
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhh
Q 007363 325 KNRLPEGLREQMLAHMQLRFKTA 347 (606)
Q Consensus 325 ~~~i~~~l~~rv~~y~~~~~~~~ 347 (606)
..++|.+|++.+.+|.+|..++.
T Consensus 8 fqkLPDdLKrEvldY~EfLlek~ 30 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEKK 30 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999998766
No 91
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=31.34 E-value=1.2e+02 Score=31.51 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=34.4
Q ss_pred cceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 397 ~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
....+.||...-..-....++.++++|++++.....+.+.....+++||.+=
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEE
Confidence 3456777776543323445799999999999874332233445799999764
No 92
>PRK09108 type III secretion system protein HrcU; Validated
Probab=31.13 E-value=6e+02 Score=26.14 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 007363 278 VFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQML 337 (606)
Q Consensus 278 i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~ 337 (606)
+...+..++..++.++++-.+.++.-+.....++.+=..+++++-.|+..=+|+++.|++
T Consensus 181 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrR 240 (353)
T PRK09108 181 LWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERK 240 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 344444444444444444444444433333333333234555555555555555555554
No 93
>PRK11171 hypothetical protein; Provisional
Probab=30.64 E-value=1.8e+02 Score=28.58 Aligned_cols=69 Identities=10% Similarity=-0.017 Sum_probs=43.6
Q ss_pred cceecCCCceEEecCC--CCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 397 KAEYFPPKVEIILQNE--IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 397 ~~~~~~~ge~I~~~g~--~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
....++||...-.... ..+.+++|++|++++.. +|+ ...+.+||++=.- .+.+..+.....+.++++.+
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~--~g~---~~~L~~GDsi~~p---~~~~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL--EGK---THALSEGGYAYLP---PGSDWTLRNAGAEDARFHWI 134 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCCEEEEECCCCCEEEEEE
Confidence 3456677764433322 23578999999999976 554 3578999875422 24555555445567777765
No 94
>PRK11171 hypothetical protein; Provisional
Probab=29.50 E-value=1.4e+02 Score=29.39 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=37.3
Q ss_pred hccceecCCCceEEec-CCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 395 EMKAEYFPPKVEIILQ-NEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 395 ~~~~~~~~~ge~I~~~-g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
.+....++||..+-.. .....+.++|++|+..+.. +|+ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~---~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND---WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 5566789999988763 5556689999999999975 554 34789999754
No 95
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=28.68 E-value=1.6e+02 Score=27.99 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=46.0
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEec-CCCEEec---cccccCCCcccEEEEcccEEEE
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLG-SADMAGE---IGVIFNIPQPFTVRTKRLSQVI 471 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~-~G~~fGe---~~~l~~~~~~~~v~a~~~~~l~ 471 (606)
++...+.+|+..-..-...+.+.+++.|++.|.. .|. ....++ .-+.|-. -++.-..-+.+++.|.+++++.
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~--~g~--~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vA 106 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA--HGS--TFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVA 106 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEee--ccc--hHhhcccccccccCCCCCeEEecCCceEEEEeecceEEE
Confidence 3455678888766555555668889999998865 222 122222 1112211 1122223367899999999888
Q ss_pred EeCHHH
Q 007363 472 RLSHHH 477 (606)
Q Consensus 472 ~l~~~~ 477 (606)
.-+.-.
T Consensus 107 vC~AP~ 112 (270)
T COG3718 107 VCSAPG 112 (270)
T ss_pred EEeCCC
Confidence 776544
No 96
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=28.00 E-value=2e+02 Score=26.33 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=40.1
Q ss_pred ecCCCceEEec-CCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 400 YFPPKVEIILQ-NEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 400 ~~~~ge~I~~~-g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
.+.||...-.. -..+..+.+|++|++.+.. +|+ ...+++||.+=-- .+.++.+.....++|+++.+
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~--~~~---~~~l~~Gd~~~~~---~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTI--NGQ---DYHLVAGQSYAIN---TGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEE--CCE---EEEecCCCEEEEc---CCCCeeeeCCCCCCeEEEEE
Confidence 45666532211 1234579999999999876 444 3478999875432 24555555555556666655
No 97
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=27.58 E-value=1.6e+02 Score=24.37 Aligned_cols=48 Identities=31% Similarity=0.421 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHh--------h------cccHHHHHhhCCHHHHHHHHHHHhHh
Q 007363 326 NRLPEGLREQMLAHMQLRFKT--------A------ELQQEEVLEDLPKAIRSSISQHLFRG 373 (606)
Q Consensus 326 ~~i~~~l~~rv~~y~~~~~~~--------~------~~~~~~~l~~Lp~~Lr~~i~~~~~~~ 373 (606)
.-+|.+++.+|..-+...-.. . ..-..++|..||+.+|.++..+....
T Consensus 7 aaLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 7 AALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HHCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 357888988875433221110 0 11146899999999999998776544
No 98
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=26.47 E-value=1.6e+02 Score=30.46 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=34.4
Q ss_pred ccceecCCCceEEecCCC-CCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEE
Q 007363 396 MKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMA 447 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~f 447 (606)
+....+.||...-..-.. .+++++|++|++++... .+|.. ....+++||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~-~~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNA-RTFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcE-EEEEECCCCEE
Confidence 456677888866543333 56899999999998863 23332 23468999864
No 99
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=25.80 E-value=2e+02 Score=25.04 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=34.1
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCc----eeEEE--EecCCCEEec
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGA----EQFLT--KLGSADMAGE 449 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~----~~~~~--~l~~G~~fGe 449 (606)
...+.||....-.-..+..+.+|.+|+..+..- .++. ..... .+++||.|--
T Consensus 38 ~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~v 96 (144)
T PF00190_consen 38 RVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVV 96 (144)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE
T ss_pred eeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceee
Confidence 344578877665444778899999999986652 3321 11222 4999998763
No 100
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=25.77 E-value=6.8e+02 Score=24.97 Aligned_cols=44 Identities=7% Similarity=0.040 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHH
Q 007363 290 LTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLR 333 (606)
Q Consensus 290 ~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~ 333 (606)
..+|+.-.+.+...+..+-.++.+-.-+++++-.++.+=+++++
T Consensus 192 ~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiK 235 (349)
T COG4792 192 AVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIK 235 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhh
Confidence 55666656655544444433333333344444444444444443
No 101
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.70 E-value=8.2e+02 Score=28.35 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=14.9
Q ss_pred HHhhccccccccccccchH
Q 007363 132 LRYVTRLWFTMDVASTLPF 150 (606)
Q Consensus 132 ~~Yl~~~~f~iDlls~iP~ 150 (606)
++|++++|+++|++-..-.
T Consensus 493 ~~y~~s~wN~ld~~i~~ls 511 (798)
T KOG3599|consen 493 GRYVRSKWNWLDLAIVLLS 511 (798)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 4899999999998755433
No 102
>PRK10750 potassium transporter; Provisional
Probab=25.08 E-value=1.5e+02 Score=31.93 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=30.9
Q ss_pred hhhhhhHhHhhhhhhhcccccccc--cCCchhHHHHHHHHHHHHHH
Q 007363 247 WLGYTYSIYWSIVTLTTVGYGDLH--AVNTGEKVFNMLYMLFNIGL 290 (606)
Q Consensus 247 ~~~Y~~sly~a~~tlttvGyGdi~--p~t~~e~i~~i~~~i~g~~~ 290 (606)
.+...+|++-++..++|.||.... --+...+.+.++.|++|.+-
T Consensus 302 ~~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~ 347 (483)
T PRK10750 302 LMTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCA 347 (483)
T ss_pred HHHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCc
Confidence 356778888888888999998443 23344467777888877543
No 103
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=24.71 E-value=2.2e+02 Score=19.05 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhhC-CCCHHHHHHHHHHHHHHH
Q 007363 310 LFMRNAINEILRYGSKN-RLPEGLREQMLAHMQLRF 344 (606)
Q Consensus 310 ~~~~~~~~~~~~~m~~~-~i~~~l~~rv~~y~~~~~ 344 (606)
.-|.+-+.++..|+... +++++++.++.++++-..
T Consensus 5 ~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~ 40 (45)
T smart00511 5 SGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHL 40 (45)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 46888999999999864 678899999999987544
No 104
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=24.54 E-value=1.4e+02 Score=26.44 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccc
Q 007363 412 EIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIG 451 (606)
Q Consensus 412 ~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 451 (606)
...+++.+|++|+..+.. +|.+ ..+++||+.|..+
T Consensus 62 s~edEfv~ILeGE~~l~~--d~~e---~~lrpGD~~gFpA 96 (161)
T COG3837 62 SAEDEFVYILEGEGTLRE--DGGE---TRLRPGDSAGFPA 96 (161)
T ss_pred ccCceEEEEEcCceEEEE--CCee---EEecCCceeeccC
Confidence 445789999999998865 5543 4689999998654
No 105
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=23.81 E-value=2.1e+02 Score=29.96 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=32.1
Q ss_pred hhhhhHhHhhhhhhhcccccc--cccCCchhHHHHHHHHHHHHH
Q 007363 248 LGYTYSIYWSIVTLTTVGYGD--LHAVNTGEKVFNMLYMLFNIG 289 (606)
Q Consensus 248 ~~Y~~sly~a~~tlttvGyGd--i~p~t~~e~i~~i~~~i~g~~ 289 (606)
.....+.+.++++++|.|+.. ...-++..+++.+++|++|..
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~ 273 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGC 273 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCC
Confidence 456778999999999999974 344456678888888888854
No 106
>PRK08156 type III secretion system protein SpaS; Validated
Probab=23.54 E-value=8.3e+02 Score=25.23 Aligned_cols=55 Identities=13% Similarity=0.014 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 007363 283 YMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQML 337 (606)
Q Consensus 283 ~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~ 337 (606)
..++..++.++++-.+.++.-+...-.++.+=..+++++-.|+..=++.++.|++
T Consensus 179 ~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R 233 (361)
T PRK08156 179 VKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRR 233 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 3333333334443333444333333222222233555555555555555555554
No 107
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=23.48 E-value=5.1e+02 Score=22.75 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------------hHHHHHHHHHHHHHHHHhh
Q 007363 281 MLYMLFNIGLTAYIIGNMTNLIVHS-------------AVRTLFMRNAINEILRYGS 324 (606)
Q Consensus 281 i~~~i~g~~~~a~~i~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~m~ 324 (606)
+++.++|++++|++++-+.+.-... .-...+|+++++...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 5678899999999997664322111 1144678888877775543
No 108
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=23.47 E-value=2.6e+02 Score=21.96 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=38.6
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEE
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (606)
+....+.||..+=.....+....+|++|...- .++ .+.+|++.=+- .-..-+..+.+.|.++.
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~------~~~~G~~~~~p-----~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG------RYGAGDWLRLP-----PGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC------EEETTEEEEE------TTEEEEEEESSCEEEEE
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc------cCCCCeEEEeC-----CCCccccCcCCCEEEEE
Confidence 44567888887777666777788899999842 122 34677654322 22344566778888774
No 109
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.19 E-value=3.9e+02 Score=22.89 Aligned_cols=10 Identities=10% Similarity=0.341 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 007363 333 REQMLAHMQL 342 (606)
Q Consensus 333 ~~rv~~y~~~ 342 (606)
++.|.+||..
T Consensus 45 k~~V~~HF~~ 54 (128)
T PF06295_consen 45 KQEVNDHFAQ 54 (128)
T ss_pred HHHHHHHHHH
Confidence 5566676653
No 110
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=22.72 E-value=1.4e+02 Score=23.10 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=30.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccce
Q 007363 351 QEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAE 399 (606)
Q Consensus 351 ~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~ 399 (606)
-.++|..||+++|.++.. ++--+..++++.++.+...++.+
T Consensus 29 AA~VL~~lp~e~r~~v~~--------Ria~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 29 AAEVLSQLPEELRAEVVR--------RIARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHHTS-HHHHHHHHH--------HHHTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHH--------HHHccCCCCHHHHHHHHHHHHHH
Confidence 467899999999987655 44556788999888887776653
No 111
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=22.47 E-value=8.6e+02 Score=24.99 Aligned_cols=61 Identities=7% Similarity=0.102 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 007363 278 VFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLA 338 (606)
Q Consensus 278 i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~ 338 (606)
+...+..+++.++.++++-.+.++.-+...-.++.+=..+++++-.|+..=+|+++.|+++
T Consensus 179 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~ 239 (349)
T PRK12721 179 VSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRE 239 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 3344444444444444443344444333333333333345555555555555655555543
No 112
>PF03891 DUF333: Domain of unknown function (DUF333); InterPro: IPR005590 This family consists of bacterial proteins whose function has not been characterised.
Probab=21.72 E-value=1.5e+02 Score=20.70 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=27.5
Q ss_pred EcEEEEEEeeCCceeEEEEecCCCEEeccccccC
Q 007363 422 SGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFN 455 (606)
Q Consensus 422 ~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~ 455 (606)
-|+..+....+|.+.-+..+..|....|.+++.+
T Consensus 15 GG~~~~~~~~~G~~~g~C~lpdG~~~~eW~l~r~ 48 (50)
T PF03891_consen 15 GGKLEIRKQPDGSQVGYCVLPDGRRCEEWALYRG 48 (50)
T ss_pred CCEEEEEEcCCCCeEeEEECCCCCEEeHHHHhhc
Confidence 4688887777886777889999999999888754
No 113
>PHA03239 envelope glycoprotein M; Provisional
Probab=21.40 E-value=4.5e+02 Score=27.74 Aligned_cols=56 Identities=9% Similarity=-0.027 Sum_probs=26.6
Q ss_pred cccccccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q 007363 265 GYGDLHAVNT-GEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEIL 320 (606)
Q Consensus 265 GyGdi~p~t~-~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 320 (606)
.|..+.-..+ ......+.+.++.++..++++-.+........+++.+|..+++++.
T Consensus 319 ~Y~~v~v~a~~l~~~v~~~Laviail~l~~~ivRlvRa~~yHr~~~t~fy~~v~~~~ 375 (429)
T PHA03239 319 LYDEIMIASPKLIQGAAGILAAFAVISIALAILRATRAYKFHKAANSKFLGQVARVA 375 (429)
T ss_pred HhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444442333 4444555555555555555554444444444444455555554443
No 114
>PHA00672 hypothetical protein
Probab=21.24 E-value=5.1e+02 Score=21.97 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=26.6
Q ss_pred hccceecCCCceEEecCCCCCeEEEEEEcEEEEEE
Q 007363 395 EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI 429 (606)
Q Consensus 395 ~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~ 429 (606)
..++...++|..+.-.--.-+.+ +|.+|.+.|+.
T Consensus 48 YARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~t 81 (152)
T PHA00672 48 YARTIRIPAGVALTGALIKVSTV-LIFSGHATVFI 81 (152)
T ss_pred eEEEEeccCceeeeeeeeEeeEE-EEecccEEEEe
Confidence 45677889998777655555667 99999999997
No 115
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=20.69 E-value=6.1e+02 Score=26.41 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=30.8
Q ss_pred hhhhHhHhhhhhhhccccccccc------CCchhHHHHHHHHHHHHHHHHHH
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHA------VNTGEKVFNMLYMLFNIGLTAYI 294 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p------~t~~e~i~~i~~~i~g~~~~a~~ 294 (606)
...+|++-++.+++|-|+.-... .++.-.++.+++|++|..=|+..
T Consensus 128 ~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~ 179 (390)
T TIGR00933 128 PLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVH 179 (390)
T ss_pred HHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHH
Confidence 57889999999999999874432 12224456666777766555444
No 116
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=20.61 E-value=3.1e+02 Score=29.47 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=42.2
Q ss_pred ccceecCCCceEEe-cCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 396 MKAEYFPPKVEIIL-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 396 ~~~~~~~~ge~I~~-~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
+....+.||..+-. .-...+..++|++|++++.. +|++ ..+++||.+--- .+.++.+.-...++++++.+
T Consensus 378 ~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~--dg~~---~~l~~GDsi~ip---~~~~H~~~N~g~~~~~~i~v 448 (468)
T TIGR01479 378 VKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI--GDET---LLLTENESTYIP---LGVIHRLENPGKIPLELIEV 448 (468)
T ss_pred EEEEEECCCCccCccccCCCceEEEEEeeEEEEEE--CCEE---EEecCCCEEEEC---CCCcEEEEcCCCCCEEEEEE
Confidence 34456788875421 22223456789999999986 5543 478999876532 24444444444556666555
No 117
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=20.59 E-value=2.6e+02 Score=27.34 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=40.3
Q ss_pred ceecCCCceEEe-cCCCC-CeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeC
Q 007363 398 AEYFPPKVEIIL-QNEIP-TDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474 (606)
Q Consensus 398 ~~~~~~ge~I~~-~g~~~-~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~ 474 (606)
...++||.-.-. ....+ +.+.+|++|++.+.. +|+ ...+++||++=-- .+.+..+.-...++++++.+.
T Consensus 62 ~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~--~g~---~~~L~~Gd~~y~p---a~~~H~~~N~~~~~a~~l~v~ 132 (260)
T TIGR03214 62 IVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA--EGE---THELREGGYAYLP---PGSKWTLANAQAEDARFFLYK 132 (260)
T ss_pred EEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCCEEEEECCCCCEEEEEEE
Confidence 345566543211 11223 579999999999975 554 3479999976432 234444444444566666554
No 118
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.25 E-value=1e+03 Score=24.92 Aligned_cols=46 Identities=4% Similarity=-0.122 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 007363 293 YIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLA 338 (606)
Q Consensus 293 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~ 338 (606)
+++-.+.++.-+...-.++.+=..+++++-+|+..=+++++.|+++
T Consensus 201 ~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq 246 (386)
T PRK12468 201 LSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQ 246 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 3333334444333333333333345566666666666666655553
No 119
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.20 E-value=9.6e+02 Score=24.72 Aligned_cols=59 Identities=12% Similarity=0.008 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 007363 280 NMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLA 338 (606)
Q Consensus 280 ~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~ 338 (606)
..+..+++.++.++++-.+.++.-+.....++.+=..+++++-.|+..=+|+++.|+++
T Consensus 190 ~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq 248 (358)
T PRK13109 190 TVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRS 248 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33334444444444443444444333333333333345566655555555655555543
Done!