Query 007363
Match_columns 606
No_of_seqs 482 out of 3534
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 23:54:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 6.8E-43 2.3E-47 360.2 5.6 348 53-504 3-353 (355)
2 2ptm_A Hyperpolarization-activ 100.0 1.9E-33 6.6E-38 265.2 20.9 196 304-502 2-197 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 7.4E-33 2.5E-37 262.0 22.2 197 304-504 3-199 (202)
4 3ukn_A Novel protein similar t 100.0 4.3E-33 1.5E-37 265.8 16.2 199 299-502 1-202 (212)
5 1orq_C Potassium channel; volt 99.9 3.2E-27 1.1E-31 226.4 9.4 207 62-304 9-220 (223)
6 2r9r_B Paddle chimera voltage 99.9 1.6E-24 5.5E-29 230.9 7.5 228 49-307 169-433 (514)
7 4f8a_A Potassium voltage-gated 99.9 1.4E-21 4.6E-26 177.0 14.7 142 351-496 5-148 (160)
8 3mdp_A Cyclic nucleotide-bindi 99.8 7.1E-20 2.4E-24 162.0 14.4 131 372-502 5-139 (142)
9 2pqq_A Putative transcriptiona 99.8 1.9E-19 6.6E-24 160.6 14.4 133 372-504 4-137 (149)
10 3gyd_A CNMP-BD protein, cyclic 99.8 2.2E-19 7.5E-24 167.0 14.4 140 365-504 31-175 (187)
11 3ocp_A PRKG1 protein; serine/t 99.8 8.6E-20 3E-24 161.0 11.0 131 357-491 7-137 (139)
12 3idb_B CAMP-dependent protein 99.8 9.1E-20 3.1E-24 165.2 10.9 127 368-494 33-159 (161)
13 2z69_A DNR protein; beta barre 99.8 4.3E-19 1.5E-23 159.3 14.3 133 372-504 11-145 (154)
14 2a9h_A Voltage-gated potassium 99.8 5.1E-19 1.8E-23 156.4 10.5 86 208-309 59-144 (155)
15 3dn7_A Cyclic nucleotide bindi 99.8 2.5E-18 8.5E-23 160.9 15.3 134 371-504 5-140 (194)
16 4ev0_A Transcription regulator 99.8 3.2E-18 1.1E-22 162.9 15.2 131 375-505 1-132 (216)
17 3e97_A Transcriptional regulat 99.8 3.3E-18 1.1E-22 164.8 14.3 135 372-506 5-140 (231)
18 3fx3_A Cyclic nucleotide-bindi 99.8 3.6E-18 1.2E-22 165.2 14.3 137 369-505 7-144 (237)
19 3d0s_A Transcriptional regulat 99.8 3.2E-18 1.1E-22 164.4 13.6 133 372-504 5-138 (227)
20 1vp6_A CNBD, cyclic-nucleotide 99.8 2.1E-18 7.2E-23 151.8 11.3 127 371-503 9-135 (138)
21 1zyb_A Transcription regulator 99.8 1.2E-17 4.3E-22 160.8 17.3 135 371-505 16-154 (232)
22 3dv8_A Transcriptional regulat 99.7 1.2E-17 4.2E-22 159.4 15.2 132 373-504 3-137 (220)
23 3dkw_A DNR protein; CRP-FNR, H 99.7 6E-18 2E-22 162.4 11.3 133 372-504 8-142 (227)
24 3shr_A CGMP-dependent protein 99.7 1.2E-17 4.2E-22 167.4 13.8 138 369-506 153-292 (299)
25 3pna_A CAMP-dependent protein 99.7 1E-17 3.5E-22 150.5 11.7 118 370-491 35-152 (154)
26 3iwz_A CAP-like, catabolite ac 99.7 3.3E-17 1.1E-21 157.5 15.9 134 372-505 10-150 (230)
27 2gau_A Transcriptional regulat 99.7 2.1E-17 7.1E-22 159.3 13.4 130 376-505 13-143 (232)
28 3shr_A CGMP-dependent protein 99.7 1.2E-17 4E-22 167.6 11.4 143 353-499 19-161 (299)
29 1wgp_A Probable cyclic nucleot 99.7 2E-18 6.8E-23 151.7 4.8 117 373-489 6-133 (137)
30 2ih3_C Voltage-gated potassium 99.7 2.4E-17 8.2E-22 140.2 10.7 61 247-307 59-119 (122)
31 4ava_A Lysine acetyltransferas 99.7 5.8E-17 2E-21 165.2 15.4 128 372-501 12-140 (333)
32 2d93_A RAP guanine nucleotide 99.7 5.5E-18 1.9E-22 148.3 6.1 125 360-488 3-129 (134)
33 3ryp_A Catabolite gene activat 99.7 1.4E-16 4.7E-21 150.9 14.9 127 379-505 2-130 (210)
34 2oz6_A Virulence factor regula 99.7 2.9E-16 9.9E-21 148.3 15.6 121 384-504 1-126 (207)
35 3tnp_B CAMP-dependent protein 99.7 3.2E-17 1.1E-21 171.6 9.0 133 367-499 139-271 (416)
36 3of1_A CAMP-dependent protein 99.7 1.1E-16 3.7E-21 155.6 12.2 130 371-504 5-134 (246)
37 2fmy_A COOA, carbon monoxide o 99.7 8.7E-17 3E-21 153.5 10.6 127 372-505 3-129 (220)
38 4h33_A LMO2059 protein; bilaye 99.7 7E-17 2.4E-21 140.3 8.3 93 249-341 43-135 (137)
39 2qcs_B CAMP-dependent protein 99.7 6.7E-16 2.3E-20 154.1 15.4 128 370-497 154-283 (291)
40 2qcs_B CAMP-dependent protein 99.7 4.2E-16 1.4E-20 155.6 13.8 132 369-504 35-166 (291)
41 3rvy_A ION transport protein; 99.7 1.1E-17 3.6E-22 166.3 1.8 206 62-308 31-245 (285)
42 3kcc_A Catabolite gene activat 99.7 7.7E-16 2.6E-20 150.9 14.6 124 382-505 55-180 (260)
43 1ft9_A Carbon monoxide oxidati 99.7 2.1E-16 7.2E-21 151.1 10.1 125 374-505 1-125 (222)
44 3of1_A CAMP-dependent protein 99.7 5.2E-16 1.8E-20 150.7 12.8 117 370-489 122-238 (246)
45 1o5l_A Transcriptional regulat 99.6 3.6E-16 1.2E-20 148.5 10.9 128 377-504 3-132 (213)
46 3vou_A ION transport 2 domain 99.6 2.2E-15 7.4E-20 133.3 13.9 113 201-335 26-148 (148)
47 3tnp_B CAMP-dependent protein 99.6 3.5E-16 1.2E-20 163.7 10.4 135 370-504 264-405 (416)
48 4din_B CAMP-dependent protein 99.6 4.8E-16 1.6E-20 161.0 11.2 132 369-500 244-377 (381)
49 4din_B CAMP-dependent protein 99.6 4.1E-16 1.4E-20 161.5 10.3 132 369-504 126-257 (381)
50 3e6c_C CPRK, cyclic nucleotide 99.6 1.5E-15 5.1E-20 148.0 11.6 129 374-505 10-139 (250)
51 1o7f_A CAMP-dependent RAP1 gua 99.6 2.5E-16 8.5E-21 168.4 6.4 136 358-494 27-165 (469)
52 3eff_K Voltage-gated potassium 99.6 3.7E-15 1.3E-19 130.5 11.4 92 200-307 7-98 (139)
53 2bgc_A PRFA; bacterial infecti 99.6 2.6E-14 8.8E-19 138.1 15.0 122 382-504 2-129 (238)
54 3la7_A Global nitrogen regulat 99.6 1.9E-14 6.6E-19 139.4 13.9 119 386-504 30-154 (243)
55 1o7f_A CAMP-dependent RAP1 gua 99.6 9.8E-15 3.3E-19 156.0 12.9 124 369-495 333-458 (469)
56 4f7z_A RAP guanine nucleotide 99.6 8.2E-15 2.8E-19 170.6 12.0 127 363-490 32-161 (999)
57 2k1e_A Water soluble analogue 99.6 5.9E-15 2E-19 121.5 7.6 91 201-307 8-98 (103)
58 3cf6_E RAP guanine nucleotide 99.5 6.4E-14 2.2E-18 154.8 11.9 133 352-488 12-146 (694)
59 2q67_A Potassium channel prote 99.5 2.3E-13 8E-18 113.8 11.5 61 249-309 49-109 (114)
60 3b02_A Transcriptional regulat 99.5 3.2E-13 1.1E-17 126.0 12.5 100 399-505 2-102 (195)
61 4f7z_A RAP guanine nucleotide 99.4 2.7E-13 9.1E-18 157.9 11.6 113 369-484 333-447 (999)
62 3ldc_A Calcium-gated potassium 99.4 5.8E-13 2E-17 104.3 9.5 54 249-302 28-81 (82)
63 3ouf_A Potassium channel prote 99.4 1.1E-12 3.6E-17 106.4 10.1 56 249-304 32-87 (97)
64 3pjs_K KCSA, voltage-gated pot 99.4 2.8E-15 9.5E-20 135.1 -8.2 64 246-309 64-127 (166)
65 2zcw_A TTHA1359, transcription 99.4 1.5E-12 5.2E-17 122.1 9.8 105 392-504 1-108 (202)
66 4dxw_A Navrh, ION transport pr 99.3 7.9E-12 2.7E-16 119.6 9.5 205 61-304 12-225 (229)
67 1xl4_A Inward rectifier potass 99.2 3.2E-11 1.1E-15 118.6 9.2 81 208-304 57-137 (301)
68 1p7b_A Integral membrane chann 99.1 6.9E-11 2.4E-15 117.4 8.2 59 248-306 95-153 (333)
69 2qks_A KIR3.1-prokaryotic KIR 99.1 3.3E-10 1.1E-14 112.2 11.0 57 249-305 78-134 (321)
70 3um7_A Potassium channel subfa 99.1 9.6E-10 3.3E-14 107.4 13.8 56 249-304 115-170 (309)
71 3um7_A Potassium channel subfa 99.0 1E-09 3.5E-14 107.2 8.6 60 249-308 224-289 (309)
72 3sya_A G protein-activated inw 98.9 4.9E-09 1.7E-13 103.7 11.8 95 206-307 51-151 (340)
73 3ukm_A Potassium channel subfa 98.9 7.2E-09 2.4E-13 99.7 10.7 55 249-303 93-147 (280)
74 4gx0_A TRKA domain protein; me 98.9 4.6E-09 1.6E-13 114.4 10.2 86 200-302 19-105 (565)
75 3ukm_A Potassium channel subfa 98.9 5.2E-09 1.8E-13 100.7 9.1 56 249-304 201-263 (280)
76 3spc_A Inward-rectifier K+ cha 98.8 1.3E-08 4.4E-13 100.8 9.3 94 206-306 53-153 (343)
77 1ors_C Potassium channel; volt 98.7 9E-09 3.1E-13 88.5 3.3 104 61-187 6-111 (132)
78 2kyh_A KVAP, voltage-gated pot 98.7 7.8E-09 2.7E-13 90.1 3.0 105 62-189 22-128 (147)
79 1lnq_A MTHK channels, potassiu 98.5 8.6E-09 3E-13 104.5 -0.8 57 249-305 45-101 (336)
80 3kg2_A Glutamate receptor 2; I 87.2 0.75 2.6E-05 51.8 6.7 56 248-304 562-617 (823)
81 3rvy_A ION transport protein; 74.1 6.3 0.00021 37.8 7.1 20 170-189 113-132 (285)
82 3rns_A Cupin 2 conserved barre 71.0 20 0.00067 32.9 9.5 68 396-473 39-106 (227)
83 3fjs_A Uncharacterized protein 70.7 27 0.00091 27.9 9.2 67 396-472 38-104 (114)
84 1yhf_A Hypothetical protein SP 66.8 40 0.0014 26.5 9.6 68 396-473 42-109 (115)
85 2ozj_A Cupin 2, conserved barr 66.5 20 0.00069 28.4 7.6 64 400-473 44-107 (114)
86 4dxw_A Navrh, ION transport pr 64.9 17 0.00057 33.4 7.7 13 91-103 76-88 (229)
87 2pfw_A Cupin 2, conserved barr 64.1 38 0.0013 26.7 8.9 68 396-473 36-103 (116)
88 2r9r_B Paddle chimera voltage 62.1 8.9 0.0003 40.3 5.7 16 353-368 471-486 (514)
89 3lwc_A Uncharacterized protein 62.0 20 0.00069 29.0 6.8 66 398-473 44-109 (119)
90 4f4l_A ION transport protein; 61.6 24 0.00081 28.3 7.0 57 247-303 36-98 (112)
91 3es1_A Cupin 2, conserved barr 58.7 13 0.00043 32.6 5.2 68 398-473 83-150 (172)
92 3ibm_A Cupin 2, conserved barr 57.1 55 0.0019 28.2 9.2 68 398-473 60-128 (167)
93 1v70_A Probable antibiotics sy 54.8 49 0.0017 25.1 7.9 69 397-473 31-100 (105)
94 1orq_C Potassium channel; volt 54.0 20 0.00068 32.7 6.1 17 167-183 99-115 (223)
95 3jzv_A Uncharacterized protein 50.4 37 0.0013 29.3 6.9 45 399-448 58-102 (166)
96 2gu9_A Tetracenomycin polyketi 49.4 53 0.0018 25.4 7.3 47 397-448 24-73 (113)
97 4e2g_A Cupin 2 conserved barre 48.9 34 0.0012 27.5 6.2 77 396-482 43-123 (126)
98 1o5u_A Novel thermotoga mariti 48.9 41 0.0014 26.2 6.3 45 398-448 35-79 (101)
99 1dgw_A Canavalin; duplicated s 46.3 34 0.0012 29.9 6.0 52 396-448 43-94 (178)
100 3h8u_A Uncharacterized conserv 45.7 54 0.0019 26.2 6.9 71 396-473 41-112 (125)
101 1yfu_A 3-hydroxyanthranilate-3 44.4 40 0.0014 29.3 5.8 36 413-449 54-89 (174)
102 1zvf_A 3-hydroxyanthranilate 3 43.2 43 0.0015 29.1 5.8 57 414-475 54-113 (176)
103 3rns_A Cupin 2 conserved barre 42.1 88 0.003 28.4 8.5 68 395-472 154-222 (227)
104 1sfn_A Conserved hypothetical 40.6 74 0.0025 29.4 7.8 71 394-472 165-236 (246)
105 2bnm_A Epoxidase; oxidoreducta 40.6 47 0.0016 29.3 6.2 70 400-473 123-196 (198)
106 1fi2_A Oxalate oxidase, germin 39.8 66 0.0023 28.6 7.1 53 396-448 74-130 (201)
107 3es4_A Uncharacterized protein 39.4 35 0.0012 27.6 4.4 45 401-450 49-93 (116)
108 3kgz_A Cupin 2 conserved barre 39.2 22 0.00077 30.4 3.6 43 400-447 50-92 (156)
109 1o4t_A Putative oxalate decarb 38.9 70 0.0024 26.1 6.6 46 398-448 61-107 (133)
110 2vpv_A Protein MIF2, MIF2P; nu 36.6 64 0.0022 27.9 6.0 66 399-472 93-160 (166)
111 1vj2_A Novel manganese-contain 36.5 69 0.0024 25.8 6.1 68 398-473 52-119 (126)
112 2qjv_A Uncharacterized IOLB-li 36.5 98 0.0034 29.0 7.7 78 395-476 30-111 (270)
113 2fqp_A Hypothetical protein BP 36.4 37 0.0012 26.0 4.2 48 398-448 22-70 (97)
114 3i7d_A Sugar phosphate isomera 36.0 69 0.0024 27.3 6.3 46 398-448 47-94 (163)
115 1j58_A YVRK protein; cupin, de 35.8 1.3E+02 0.0045 29.7 9.3 74 396-473 259-334 (385)
116 2f4p_A Hypothetical protein TM 35.7 1E+02 0.0035 25.7 7.2 69 398-473 52-120 (147)
117 4i4a_A Similar to unknown prot 34.1 1.1E+02 0.0038 24.3 7.1 76 399-482 39-116 (128)
118 1y9q_A Transcriptional regulat 32.9 1.2E+02 0.0043 26.3 7.7 45 399-448 109-155 (192)
119 3c3v_A Arachin ARAH3 isoform; 32.7 66 0.0022 33.4 6.4 60 389-448 367-428 (510)
120 2vqa_A SLL1358 protein, MNCA; 32.2 91 0.0031 30.5 7.3 52 396-448 236-289 (361)
121 3bcw_A Uncharacterized protein 31.9 33 0.0011 28.0 3.3 44 401-449 56-99 (123)
122 1j58_A YVRK protein; cupin, de 31.7 75 0.0026 31.5 6.7 52 396-448 81-133 (385)
123 1fxz_A Glycinin G1; proglycini 31.5 80 0.0027 32.5 6.8 55 394-448 338-394 (476)
124 1sfn_A Conserved hypothetical 31.5 1.5E+02 0.0052 27.2 8.3 64 398-473 54-117 (246)
125 2vqa_A SLL1358 protein, MNCA; 31.4 87 0.003 30.7 7.0 51 397-448 55-107 (361)
126 3d82_A Cupin 2, conserved barr 31.3 1.2E+02 0.0041 22.7 6.6 50 415-474 51-100 (102)
127 3h7j_A Bacilysin biosynthesis 31.0 1.1E+02 0.0036 28.2 7.1 68 398-473 149-217 (243)
128 2d5f_A Glycinin A3B4 subunit; 30.9 81 0.0028 32.6 6.7 60 389-448 362-423 (493)
129 2pyt_A Ethanolamine utilizatio 30.8 59 0.002 26.8 4.7 64 398-473 61-124 (133)
130 4b29_A Dimethylsulfoniopropion 29.9 82 0.0028 28.5 5.7 46 399-448 137-182 (217)
131 4axo_A EUTQ, ethanolamine util 29.4 64 0.0022 27.4 4.7 50 414-473 84-133 (151)
132 2cav_A Protein (canavalin); vi 28.3 79 0.0027 32.3 6.1 53 395-448 87-139 (445)
133 2i45_A Hypothetical protein; n 27.9 76 0.0026 24.5 4.8 53 415-477 49-102 (107)
134 3cew_A Uncharacterized cupin p 27.6 1.5E+02 0.0051 23.5 6.8 46 398-448 30-77 (125)
135 3fz3_A Prunin; TREE NUT allerg 27.5 1E+02 0.0036 31.9 6.7 61 388-448 388-450 (531)
136 3bu7_A Gentisate 1,2-dioxygena 27.4 1.2E+02 0.004 30.4 7.0 78 397-482 297-375 (394)
137 2b8m_A Hypothetical protein MJ 27.1 59 0.002 25.6 4.1 46 399-448 32-77 (117)
138 3h7j_A Bacilysin biosynthesis 27.0 98 0.0034 28.4 6.1 70 396-473 36-106 (243)
139 1ors_C Potassium channel; volt 26.9 35 0.0012 28.2 2.6 20 169-188 96-115 (132)
140 3l2h_A Putative sugar phosphat 26.9 1.3E+02 0.0046 25.2 6.6 45 398-447 50-96 (162)
141 2xp1_A SPT6; transcription, IW 26.3 1.1E+02 0.0036 26.8 5.7 36 377-418 13-48 (178)
142 1sq4_A GLXB, glyoxylate-induce 26.0 80 0.0027 29.8 5.3 50 394-448 191-241 (278)
143 2qnk_A 3-hydroxyanthranilate 3 25.5 98 0.0033 29.1 5.5 58 412-475 49-106 (286)
144 1lr5_A Auxin binding protein 1 25.1 79 0.0027 26.8 4.7 51 398-448 45-99 (163)
145 2q30_A Uncharacterized protein 25.0 1.3E+02 0.0043 23.0 5.7 66 398-472 37-104 (110)
146 3d0j_A Uncharacterized protein 24.8 99 0.0034 25.7 4.8 63 409-476 45-110 (140)
147 2e9q_A 11S globulin subunit be 24.5 1.3E+02 0.0043 30.9 6.7 61 388-448 316-378 (459)
148 2opk_A Hypothetical protein; p 23.4 77 0.0026 25.0 4.0 45 413-463 52-96 (112)
149 1rc6_A Hypothetical protein YL 23.3 1.3E+02 0.0044 27.9 6.3 68 399-474 64-133 (261)
150 3pjz_A Potassium uptake protei 22.6 1.1E+02 0.0037 31.7 5.9 43 246-288 303-347 (494)
151 1sef_A Conserved hypothetical 21.9 1E+02 0.0035 28.9 5.2 70 396-473 184-255 (274)
152 2kyh_A KVAP, voltage-gated pot 21.7 71 0.0024 26.9 3.6 17 170-186 106-122 (147)
153 2ea7_A 7S globulin-1; beta bar 21.6 1.2E+02 0.004 30.9 5.8 54 394-448 61-114 (434)
154 1sq4_A GLXB, glyoxylate-induce 21.5 1E+02 0.0035 29.1 5.1 68 398-473 72-141 (278)
155 1uij_A Beta subunit of beta co 21.3 1.1E+02 0.0038 30.8 5.6 53 395-448 50-102 (416)
156 2qnk_A 3-hydroxyanthranilate 3 20.8 3E+02 0.01 25.9 7.8 69 396-475 209-277 (286)
157 2oa2_A BH2720 protein; 1017534 20.2 1.8E+02 0.0062 24.0 6.0 71 398-473 47-121 (148)
158 3bu7_A Gentisate 1,2-dioxygena 20.2 77 0.0026 31.7 4.0 48 397-448 126-173 (394)
159 2lcm_A Voltage-dependent N-typ 20.1 44 0.0015 19.3 1.3 20 169-188 5-24 (28)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=6.8e-43 Score=360.24 Aligned_cols=348 Identities=15% Similarity=0.178 Sum_probs=143.7
Q ss_pred EcCCChhHHhHHHHHHHHHHHHHhhcceeeeeecCC--CccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHH
Q 007363 53 IAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA--TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKI 130 (606)
Q Consensus 53 i~P~s~~~~~W~~~~~~l~~~~~~~~p~~~~f~~~~--~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i 130 (606)
+.|+|+. ++.+++++++.+++++..+....... ...+..++.++.++|++|+++++..+ +.
T Consensus 3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~----------- 65 (355)
T 3beh_A 3 VLPFLRI---YAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR---RA----------- 65 (355)
T ss_dssp ----CCS---SSSHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS-----------
T ss_pred CCchhHH---HHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc-----------
Confidence 4677775 46666666666666666553222111 12244556666667899999998532 11
Q ss_pred HHHhhcccccccccccc-chHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHHhHhhhhHHHHHHHHHHHHHHHH
Q 007363 131 ALRYVTRLWFTMDVAST-LPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTL 209 (606)
Q Consensus 131 ~~~Yl~~~~f~iDlls~-iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 209 (606)
...|.+++|+++|++++ +|+.... .. .. ...+++|++|++|+.|..+.++.+...... ....+..++..++
T Consensus 66 ~~~~~~~~~~i~Dl~~i~~p~~~~~--~~-~~---~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~--~~~~l~~~~~~~~ 137 (355)
T 3beh_A 66 GVVRDRTPKIAIDVLAVLVPLAAFL--LD-GS---PDWSLYCAVWLLKPLRDSTFFPVLGRVLAN--EARNLIGVTTLFG 137 (355)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHH--SC-CS---GGGGGGGGGGGSHHHHTCSSHHHHHHHHHH--THHHHHHHHHHHH
T ss_pred cceeccCcchHHHHHHHHHHHHHHH--hc-cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 13577778999999999 6886543 11 11 334455555555555544334433333221 1245666777778
Q ss_pred HHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 007363 210 FAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIG 289 (606)
Q Consensus 210 ~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~ 289 (606)
+++|++||++|.++.. .+.+.+.+|.+|+||+++|||||||||++|.|+.++++++++|++|++
T Consensus 138 ~~~~~~a~~~~~~e~~----------------~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~ 201 (355)
T 3beh_A 138 VVLFAVALAAYVIERD----------------IQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIG 201 (355)
T ss_dssp HHHHHHHHHHHHHHTT----------------TCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC----------------CCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHH
Confidence 8899999999988731 112335679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhcccHHHHHhhCCHHHHHHHHHH
Q 007363 290 LTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQH 369 (606)
Q Consensus 290 ~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~ 369 (606)
++++++|.+++.+.+..++ +++.
T Consensus 202 ~~~~~~~~i~~~~~~~~~~----------------------------~~~~----------------------------- 224 (355)
T 3beh_A 202 IFGLWAGILATGFYQEVRR----------------------------GDFV----------------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------------HHHH-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------------Hhhc-----------------------------
Confidence 9999999998766432110 0010
Q ss_pred HhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEec
Q 007363 370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGE 449 (606)
Q Consensus 370 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 449 (606)
...+.++++++|++++++.+++++..++.+.|+|||.|+++||.++++|+|.+|.|+++... ...+++|++|||
T Consensus 225 ~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe 298 (355)
T 3beh_A 225 RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGE 298 (355)
T ss_dssp HHHC----------------------------------------------------------------------------
T ss_pred ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEEee
Confidence 02467889999999999999999999999999999999999999999999999999998732 247899999999
Q ss_pred cccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 450 IGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 450 ~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
.+++.+.|++++++|.++|+++.+++++|.++++++|++.+.+.+.+.+|+++..
T Consensus 299 ~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~~~ 353 (355)
T 3beh_A 299 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAAA 353 (355)
T ss_dssp -------------------------------------------------------
T ss_pred hHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998888876643
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=1.9e-33 Score=265.21 Aligned_cols=196 Identities=17% Similarity=0.342 Sum_probs=183.9
Q ss_pred hchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhcccHHHHHhhCCHHHHHHHHHHHhHhHhhhhccccC
Q 007363 304 HSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQG 383 (606)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ 383 (606)
+.+.++.+|+++++.+++||+.+++|.+|+.||++|++|.|+.++.+++++++.||++||.++..+.+.++++++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~ 81 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVG 81 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhc
Confidence 45778899999999999999999999999999999999999877888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEE
Q 007363 384 VSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVR 463 (606)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~ 463 (606)
++++++..++..++.+.|+||++|+++||.++.+|||.+|.|+++. .+|+ .+..+++|++|||.+++.+.+++++++
T Consensus 82 l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~ 158 (198)
T 2ptm_A 82 ADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--IATSLSDGSYFGEICLLTRERRVASVK 158 (198)
T ss_dssp CCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--EEEEECTTCEESCHHHHHSSCCSSEEE
T ss_pred CCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--EEEEecCCCEechHHHcCCCccceEEE
Confidence 9999999999999999999999999999999999999999999987 5665 788999999999999999999999999
Q ss_pred EcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHh
Q 007363 464 TKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502 (606)
Q Consensus 464 a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~ 502 (606)
|.++|+++.|++++|.++++++|++...+.+.+.+|++.
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (198)
T 2ptm_A 159 CETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLTR 197 (198)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC--
T ss_pred EeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998887776643
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=100.00 E-value=7.4e-33 Score=262.03 Aligned_cols=197 Identities=20% Similarity=0.304 Sum_probs=185.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhcccHHHHHhhCCHHHHHHHHHHHhHhHhhhhccccC
Q 007363 304 HSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQG 383 (606)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ 383 (606)
+.+.++.+|+++++.+++||+.+++|.+|+.||++|++|.|+.+..+++++++.||++||.++..+.+.++++++|+|++
T Consensus 3 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~ 82 (202)
T 3bpz_A 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFAN 82 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhc
Confidence 56788899999999999999999999999999999999999877889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEE
Q 007363 384 VSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVR 463 (606)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~ 463 (606)
++++++..++..++.+.|+||++|+++||.++.+|||.+|.|+++. .+|.+ ..+++|++|||.+++.+.+++++++
T Consensus 83 l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~---~~l~~G~~fGe~~~~~~~~~~~~v~ 158 (202)
T 3bpz_A 83 ADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE---MKLSDGSYFGEICLLTRGRRTASVR 158 (202)
T ss_dssp SCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC---EEEETTCEECHHHHHHCSBCSSEEE
T ss_pred CCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE---EEEcCCCEeccHHHhcCCCcccEEE
Confidence 9999999999999999999999999999999999999999999985 55654 3689999999999999999999999
Q ss_pred EcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 464 TKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 464 a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
|.++|+++.|++++|.++++++|++...+.+.+.+|++...
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~~~ 199 (202)
T 3bpz_A 159 ADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIG 199 (202)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHHC-
T ss_pred EeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987765
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=4.3e-33 Score=265.82 Aligned_cols=199 Identities=19% Similarity=0.313 Sum_probs=178.4
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhh-cccHHHHHhhCCHHHHHHHHHHHhHhHhhh
Q 007363 299 TNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEK 377 (606)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~ 377 (606)
++++++.++++.+|+++++.+++||+.+++|.+|+.||++||+|.|+.+ +.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 4577888999999999999999999999999999999999999999866 7888999999999999999999998887 8
Q ss_pred hccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCC-
Q 007363 378 TYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNI- 456 (606)
Q Consensus 378 ~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~- 456 (606)
+|+|++++++++..++..++.+.|+||++|+++||.++.+|||.+|.|+++. +| ..+..+++|++|||.+++.+.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~~~~l~~G~~fGe~~~~~~~~ 155 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TVLAILGKGDLIGSDSLTKEQV 155 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CEEEEECTTCEEECSCCSSSSC
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eEEEEecCCCCcCcHHhccCCC
Confidence 9999999999999999999999999999999999999999999999999986 44 478899999999999999998
Q ss_pred -CcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHh
Q 007363 457 -PQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502 (606)
Q Consensus 457 -~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~ 502 (606)
+++++++|.++|+++.|++++|.++++++|++...+++.+.+++..
T Consensus 156 ~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 156 IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999888877644
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.94 E-value=3.2e-27 Score=226.40 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHHHHhhcceeee--eecCCCccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhcccc
Q 007363 62 WWQTFLVVLVVYSAWASPFELA--FRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLW 139 (606)
Q Consensus 62 ~W~~~~~~l~~~~~~~~p~~~~--f~~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~ 139 (606)
.||.+++++++++++.+..+.. ++.+....+..+|.+++++|.+|+++|++++ ..+++|+|+
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~--------------~~~~~y~~~-- 72 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS--------------GDPAGYVKK-- 72 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT--------------SCHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccc--------------ccHHHHHHH--
Confidence 4899999999999988777653 3344566788999999999999999999876 113799998
Q ss_pred ccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHHhHh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 140 FTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEK---DIRFTYFITRLSKLICVTLFAVHSAG 216 (606)
Q Consensus 140 f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~~---~~~~~~~~~~~~~l~~~~~~~~h~~a 216 (606)
+++|+++++|++....... .. .....+|++|++|++|+.|..+...+ .........++..++..+++++|+.|
T Consensus 73 ~iiDllailP~~~~~~~~~-~~---~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 148 (223)
T 1orq_C 73 TLYEIPALVPAGLLALIEG-HL---AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGA 148 (223)
T ss_dssp HHHHCTTHHHHHHHHHHHH-HH---HTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhc-ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999987653111 10 11234555555555555555442221 11111111346667777788889999
Q ss_pred HHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 007363 217 CFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIG 296 (606)
Q Consensus 217 c~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~ 296 (606)
|++++++... .++.+.+|.+|+||+++|+|||||||++|.|+.|++++++.|++|++++++++|
T Consensus 149 ~~~~~~e~~~----------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~ 212 (223)
T 1orq_C 149 FAIYIVEYPD----------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG 212 (223)
T ss_dssp HHHHHTTSSS----------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876311 112345799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 007363 297 NMTNLIVH 304 (606)
Q Consensus 297 ~i~~~~~~ 304 (606)
.+++.+++
T Consensus 213 ~i~~~~~~ 220 (223)
T 1orq_C 213 TVSNMFQK 220 (223)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.90 E-value=1.6e-24 Score=230.87 Aligned_cols=228 Identities=18% Similarity=0.245 Sum_probs=156.5
Q ss_pred CceEEcCC-ChhHHhHHHHHHHHHHHHHhhcceeee--eecC--------------------------CCccchhhhHHH
Q 007363 49 KKYVIAPY-DYRYRWWQTFLVVLVVYSAWASPFELA--FRKA--------------------------ATGSLLIVDLVV 99 (606)
Q Consensus 49 ~~~ii~P~-s~~~~~W~~~~~~l~~~~~~~~p~~~~--f~~~--------------------------~~~~~~~~~~~~ 99 (606)
...+-+|. |...++|+.+++++++.+++++.++.. +... ....+.++|.++
T Consensus 169 w~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~ 248 (514)
T 2r9r_B 169 WLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLC 248 (514)
T ss_dssp HHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHHHHHH
Confidence 33444576 456788999999999998888776653 2111 234577899999
Q ss_pred HHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcCccCCC----ceechhhhhhh
Q 007363 100 DFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDG----RVFGFLNLLRL 175 (606)
Q Consensus 100 ~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~~~~~~----~~~~~l~llrl 175 (606)
.++|++|+++|++++ + + +++|++++|+++|+++++|+++......... ++ ..+.++|++|+
T Consensus 249 ~~iFtiE~ilR~~~~------~----~----k~~Y~ks~wniiDli~iip~~i~l~~~~~~~-~~~~~~~~~~~lrvlRl 313 (514)
T 2r9r_B 249 IIWFSFEFLVRFFAC------P----S----KAGFFTNIMNIIDIVAIIPYYVTIFLTESNK-SVLQFQNVRRVVQIFRI 313 (514)
T ss_dssp HHHHHHHHHHHHHHS------S----C----SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSC-SHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC------C----c----HHHHHhchhHHHHHHHHHHHHHHHHhhhccc-cchhhhhHHHHHHHHHH
Confidence 999999999999875 1 1 1589999999999999999987654321110 00 11334445555
Q ss_pred hHHHhHHHHHHHhHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhh
Q 007363 176 WRLRRVGELFTRLEKDIRF----TYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYT 251 (606)
Q Consensus 176 lRl~r~~~~~~~l~~~~~~----~~~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~ 251 (606)
+|++|++++.+.......+ ......+..+++++++.++++|+++|+.+.. ...+.+..|.
T Consensus 314 lRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~----------------~~~~~F~s~~ 377 (514)
T 2r9r_B 314 MRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAD----------------ERDSQFPSIP 377 (514)
T ss_dssp HGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------------CTTCSCSSHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecc----------------CCCccccchh
Confidence 5554444443322211111 1112234444555556667778777766421 1233456799
Q ss_pred hHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007363 252 YSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (606)
Q Consensus 252 ~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 307 (606)
+|+||+++|||||||||+.|.|..+++++++++++|+++++++++.+.+.+.....
T Consensus 378 ~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 378 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887766544
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.87 E-value=1.4e-21 Score=177.03 Aligned_cols=142 Identities=21% Similarity=0.268 Sum_probs=124.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe
Q 007363 351 QEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY 430 (606)
Q Consensus 351 ~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~ 430 (606)
.+++++.||+++|.++..+++.++++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred eCCceeEEEEecCCCEEeccccccC--CCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHH
Q 007363 431 KNGAEQFLTKLGSADMAGEIGVIFN--IPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNF 496 (606)
Q Consensus 431 ~~g~~~~~~~l~~G~~fGe~~~l~~--~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~ 496 (606)
+ +..+..+++|++||+.+++.+ .+++++++|.++|+++.|++++|.++++++|++...+++.+
T Consensus 84 -~--~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 84 -D--DEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp -T--TEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred -C--CEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 347889999999999999988 79999999999999999999999999999999888776654
No 8
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.82 E-value=7.1e-20 Score=162.03 Aligned_cols=131 Identities=15% Similarity=0.237 Sum_probs=117.3
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeE---EEEecCCCEE
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQF---LTKLGSADMA 447 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~---~~~l~~G~~f 447 (606)
.++++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++.. +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 4578999999999999999999999999999999999999999999999999999986 45677777 8999999999
Q ss_pred eccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHh
Q 007363 448 GEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502 (606)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~ 502 (606)
|+.+++.+.+++++++|.++|+++.|++++|.++++++|++...+++.+.+++..
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877754
No 9
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.81 E-value=1.9e-19 Score=160.58 Aligned_cols=133 Identities=15% Similarity=0.268 Sum_probs=125.5
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEecc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~ 450 (606)
.++++++++|.+++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++.. .+|++..+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 46789999999999999999999999999999999999999999999999999999974 46888889999999999999
Q ss_pred ccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
+++.+.++.++++|.++|+++.|++++|.++++++|++...+++.+.++++...
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~ 137 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTN 137 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887765
No 10
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.81 E-value=2.2e-19 Score=167.02 Aligned_cols=140 Identities=19% Similarity=0.225 Sum_probs=125.8
Q ss_pred HHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecC
Q 007363 365 SISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGS 443 (606)
Q Consensus 365 ~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~ 443 (606)
+...+...++++++++|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. .+|++..+..+++
T Consensus 31 ~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~ 110 (187)
T 3gyd_A 31 DKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGA 110 (187)
T ss_dssp GGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEET
T ss_pred HHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccC
Confidence 334455678999999999999999999999999999999999999999999999999999999984 5788888999999
Q ss_pred CCEEeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHH----HHHHHHHhhh
Q 007363 444 ADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMN----NFIQYVKGLK 504 (606)
Q Consensus 444 G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~----~~~~~l~~~~ 504 (606)
|++||+.+++.+.+++++++|.++|+++.|++++|.++++++|++...+++ .+.+|++...
T Consensus 111 G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~~~~ 175 (187)
T 3gyd_A 111 GAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRESY 175 (187)
T ss_dssp TCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988884 4444554443
No 11
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.81 E-value=8.6e-20 Score=161.01 Aligned_cols=131 Identities=18% Similarity=0.285 Sum_probs=117.4
Q ss_pred hCCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCcee
Q 007363 357 DLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQ 436 (606)
Q Consensus 357 ~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~ 436 (606)
++|..+|.+...+...++++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|++.. +|.
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 5788888888888889999999999999999999999999999999999999999999999999999999965 554
Q ss_pred EEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHH
Q 007363 437 FLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKK 491 (606)
Q Consensus 437 ~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~ 491 (606)
.+..+++|++||+.+++.+.+++++++|.++|+++.|++++|.++++++|...+.
T Consensus 83 ~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 7889999999999999999999999999999999999999999999999987654
No 12
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.80 E-value=9.1e-20 Score=165.24 Aligned_cols=127 Identities=13% Similarity=0.333 Sum_probs=117.8
Q ss_pred HHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEE
Q 007363 368 QHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 368 ~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 447 (606)
.+...++++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++...+|++..+..+++|++|
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~f 112 (161)
T 3idb_B 33 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF 112 (161)
T ss_dssp HHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEE
T ss_pred HHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEe
Confidence 34567789999999999999999999999999999999999999999999999999999999778988899999999999
Q ss_pred eccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHH
Q 007363 448 GEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMN 494 (606)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 494 (606)
||.+++.+.+++++++|.++|+++.|++++|.++++++|.....+++
T Consensus 113 Ge~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 113 GELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp CGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred chHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 99999999999999999999999999999999999999987654443
No 13
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.80 E-value=4.3e-19 Score=159.26 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=121.1
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEecc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~ 450 (606)
.++++++++|.+++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. ..+|++..+..+++|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 4678999999999999999999999999999999999999999999999999999986 346778889999999999999
Q ss_pred ccccCCC-cccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 451 GVIFNIP-QPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 451 ~~l~~~~-~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+++.+.++++...
T Consensus 91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~~~ 145 (154)
T 2z69_A 91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI 145 (154)
T ss_dssp GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTCCS
T ss_pred hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 9999998 99999999999999999999999999999999999999988887655
No 14
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.78 E-value=5.1e-19 Score=156.40 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHH
Q 007363 208 TLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFN 287 (606)
Q Consensus 208 ~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g 287 (606)
+++++.+.++++|+++... +.+.+.+|.+|+||+++|+|||||||++|.|+.+++++++++++|
T Consensus 59 ~~~~i~~~a~~~~~~E~~~----------------~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~G 122 (155)
T 2a9h_A 59 LVIVLLAGSYLAVLAERGA----------------PGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAG 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTS----------------SCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC----------------CCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHH
Confidence 3344455677777776311 123345799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchHHH
Q 007363 288 IGLTAYIIGNMTNLIVHSAVRT 309 (606)
Q Consensus 288 ~~~~a~~i~~i~~~~~~~~~~~ 309 (606)
+++++++++.+++.+.+..+++
T Consensus 123 v~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 123 ITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp HHHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766544
No 15
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.78 E-value=2.5e-18 Score=160.86 Aligned_cols=134 Identities=10% Similarity=0.069 Sum_probs=124.8
Q ss_pred hHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEec
Q 007363 371 FRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGE 449 (606)
Q Consensus 371 ~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe 449 (606)
+..++++++.|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. ..+|++..+..+++|++|||
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge 84 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD 84 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence 35678899999999999999999999999999999999999999999999999999997 46788889999999999998
Q ss_pred c-ccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 450 I-GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 450 ~-~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
. +++.+.|++++++|.++|+++.|++++|.+++.++|++...+.+.+.+++....
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~ 140 (194)
T 3dn7_A 85 YMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQ 140 (194)
T ss_dssp HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 7 688899999999999999999999999999999999999999988888876655
No 16
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.77 E-value=3.2e-18 Score=162.94 Aligned_cols=131 Identities=16% Similarity=0.265 Sum_probs=121.7
Q ss_pred hhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEeccccc
Q 007363 375 VEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVI 453 (606)
Q Consensus 375 l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~~l 453 (606)
|+++|+|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++.. .+|++..+..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46789999999999999999999999999999999999999999999999999974 67888899999999999999999
Q ss_pred cCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 454 FNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 454 ~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
.+.+++++++|.++|+++.+++++|.+++.++|++...+.+.+.+++.....
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~ 132 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADL 132 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888877653
No 17
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.76 E-value=3.3e-18 Score=164.81 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=124.9
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEecc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~ 450 (606)
.++++++|+|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++.. .+|++..+..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 46789999999999999999999999999999999999999999999999999999974 57888899999999999999
Q ss_pred ccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhhh
Q 007363 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQE 506 (606)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~ 506 (606)
+++.+.|++++++|.++|+++.|++++|.+++.++|++...+++.+.+++......
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 140 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDE 140 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888765543
No 18
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.76 E-value=3.6e-18 Score=165.16 Aligned_cols=137 Identities=14% Similarity=0.217 Sum_probs=128.3
Q ss_pred HHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEE
Q 007363 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 369 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~f 447 (606)
....++++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++..+..+++|++|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence 3446789999999999999999999999999999999999999999999999999999998 467888899999999999
Q ss_pred eccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 448 GEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
|+.+++.+.|++++++|.++|+++.|++++|.+++.++|++...+++.+.+++.....
T Consensus 87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~ 144 (237)
T 3fx3_A 87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVA 144 (237)
T ss_dssp CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888877654
No 19
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.76 E-value=3.2e-18 Score=164.39 Aligned_cols=133 Identities=20% Similarity=0.351 Sum_probs=125.4
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEecc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~ 450 (606)
.++++++++|.+++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++.. .+|++..+..+++|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 45789999999999999999999999999999999999999999999999999999974 47888889999999999999
Q ss_pred ccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
+++.+.|++++++|.++|+++.|++++|.+++.++|++...+++.+.+++....
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 138 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTN 138 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888887754
No 20
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.76 E-value=2.1e-18 Score=151.75 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=116.3
Q ss_pred hHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEecc
Q 007363 371 FRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 371 ~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~ 450 (606)
..++++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++.. + ...+++|++||+.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~----~~~~~~G~~~G~~ 82 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--N----PVELGPGAFFGEM 82 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSS--S----CEEECTTCEECHH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeC--C----cceECCCCEeeeh
Confidence 346799999999999999999999999999999999999999999999999999999862 2 2478999999999
Q ss_pred ccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhh
Q 007363 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGL 503 (606)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~ 503 (606)
+++.+.++.++++|.++|+++.|++++|.++++++|++...+.+.+.+|++..
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~~ 135 (138)
T 1vp6_A 83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA 135 (138)
T ss_dssp HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC--
T ss_pred HhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999888876553
No 21
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.76 E-value=1.2e-17 Score=160.85 Aligned_cols=135 Identities=11% Similarity=0.059 Sum_probs=126.5
Q ss_pred hHhHhhhhccccCCCHHHHHHHHHh--ccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEE
Q 007363 371 FRGTVEKTYLFQGVSVDLIAQMVSE--MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 371 ~~~~l~~~~~F~~~~~~~l~~l~~~--~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~f 447 (606)
....++++++|++++++.++.++.. ++.+.|++|++|+++||.++.+|+|.+|.|+++. ..+|++..+..+++|++|
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence 4567899999999999999999998 9999999999999999999999999999999986 567888899999999999
Q ss_pred eccccccCCC-cccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 448 GEIGVIFNIP-QPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 448 Ge~~~l~~~~-~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
|+.+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+++.+.+++.....
T Consensus 96 G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~ 154 (232)
T 1zyb_A 96 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYS 154 (232)
T ss_dssp CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 999999999999999999999999999999999999999988877654
No 22
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.75 E-value=1.2e-17 Score=159.39 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=122.9
Q ss_pred hHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCE--Eec
Q 007363 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADM--AGE 449 (606)
Q Consensus 373 ~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~--fGe 449 (606)
++++++|+|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. ..+|++..+..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578899999999999999999999999999999999999999999999999999997 46788888999999999 789
Q ss_pred cccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 450 IGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 450 ~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
.+++.+.|++++++|.++|+++.+++++|.+++.++|++...+++.+.+++....
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 137 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVM 137 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888876654
No 23
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.74 E-value=6e-18 Score=162.43 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=125.2
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEecc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~ 450 (606)
.++++++|+|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. ..+|++..+..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 4678999999999999999999999999999999999999999999999999999987 457888889999999999999
Q ss_pred ccccCCC-cccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 451 GVIFNIP-QPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 451 ~~l~~~~-~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
+++.+.| +.++++|.++|+++.+++++|.+++.++|++...+++.+.+++....
T Consensus 88 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 142 (227)
T 3dkw_A 88 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI 142 (227)
T ss_dssp TTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999999999999988887654
No 24
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.74 E-value=1.2e-17 Score=167.44 Aligned_cols=138 Identities=15% Similarity=0.170 Sum_probs=129.3
Q ss_pred HHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEee--CCceeEEEEecCCCE
Q 007363 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK--NGAEQFLTKLGSADM 446 (606)
Q Consensus 369 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~--~g~~~~~~~l~~G~~ 446 (606)
..+..+++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++... +|++..+..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 345678889999999999999999999999999999999999999999999999999999854 788888999999999
Q ss_pred EeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhhh
Q 007363 447 AGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQE 506 (606)
Q Consensus 447 fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~ 506 (606)
|||.+++.+.|++++++|.++|+++.|++++|.+++.++|++...+++.+.+|++....+
T Consensus 233 fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~~ 292 (299)
T 3shr_A 233 FGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAEA 292 (299)
T ss_dssp ECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred eChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchhh
Confidence 999999999999999999999999999999999999999999999999999999887743
No 25
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.73 E-value=1e-17 Score=150.47 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=108.7
Q ss_pred HhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEec
Q 007363 370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGE 449 (606)
Q Consensus 370 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 449 (606)
...++++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +|. .+..+++|++||+
T Consensus 35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~--~~~~~~~G~~fGe 110 (154)
T 3pna_A 35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--WATSVGEGGSFGE 110 (154)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE--EEEEECTTCEECC
T ss_pred HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE--EEEEecCCCEeee
Confidence 446789999999999999999999999999999999999999999999999999999997 554 6778999999999
Q ss_pred cccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHH
Q 007363 450 IGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKK 491 (606)
Q Consensus 450 ~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~ 491 (606)
.+++.+.++.++++|.++|+++.|++++|.++++++|...+.
T Consensus 111 ~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 111 LALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp HHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred hHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 999999999999999999999999999999999999876544
No 26
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.73 E-value=3.3e-17 Score=157.51 Aligned_cols=134 Identities=17% Similarity=0.291 Sum_probs=114.5
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEecc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~ 450 (606)
...+++.++|.+++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. ..+|++..+..+++|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 4578899999999999999999999999999999999999999999999999999997 557888899999999999999
Q ss_pred ccccCC-CcccEEEEcccEEEEEeCHHHHHhhhccC-----hhhHHHHHHHHHHHHHhhhh
Q 007363 451 GVIFNI-PQPFTVRTKRLSQVIRLSHHHLKQMVPID-----HGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 451 ~~l~~~-~~~~~v~a~~~~~l~~l~~~~f~~ll~~~-----p~~~~~~~~~~~~~l~~~~~ 505 (606)
+++.+. |++++++|.++|+++.|++++|.+++.++ |++...+++.+.+++.....
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~ 150 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTR 150 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 999875 79999999999999999999999999999 99999999999888877553
No 27
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.73 E-value=2.1e-17 Score=159.26 Aligned_cols=130 Identities=8% Similarity=0.073 Sum_probs=119.3
Q ss_pred hhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEecccccc
Q 007363 376 EKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIF 454 (606)
Q Consensus 376 ~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~ 454 (606)
.++|+|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. ..+|++..+..+++|++||+.+++.
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence 367999999999999999999999999999999999999999999999999986 4568888899999999999999999
Q ss_pred CCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 455 NIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 455 ~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
+.|++++++|.++|+++.|++++|.++++++|++...+++.+.+++.....
T Consensus 93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~ 143 (232)
T 2gau_A 93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAER 143 (232)
T ss_dssp TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888877553
No 28
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.72 E-value=1.2e-17 Score=167.64 Aligned_cols=143 Identities=16% Similarity=0.269 Sum_probs=128.0
Q ss_pred HHHhhCCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeC
Q 007363 353 EVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKN 432 (606)
Q Consensus 353 ~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~ 432 (606)
.-..++|+..|.+...+...++++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|++|.|+++. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999965 5
Q ss_pred CceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHH
Q 007363 433 GAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQY 499 (606)
Q Consensus 433 g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~ 499 (606)
| ..+..+++|++|||.+++.+.|++++++|.++|+++.|++++|.+++.++|.........+.++
T Consensus 97 g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~ 161 (299)
T 3shr_A 97 G--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKS 161 (299)
T ss_dssp T--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhh
Confidence 5 3688999999999999999999999999999999999999999999999987665554444443
No 29
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.72 E-value=2e-18 Score=151.73 Aligned_cols=117 Identities=16% Similarity=0.268 Sum_probs=106.8
Q ss_pred hHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEE--EecCCCEEecc
Q 007363 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLT--KLGSADMAGEI 450 (606)
Q Consensus 373 ~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~--~l~~G~~fGe~ 450 (606)
++++++++|++++++.+++++..++.+.|++|++|+++||.++.+|+|.+|.|++....+|++..+. .+++|++|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 4688999999999999999999999999999999999999999999999999997656677776666 99999999999
Q ss_pred cc---ccCCC------cccEEEEcccEEEEEeCHHHHHhhhccChhhH
Q 007363 451 GV---IFNIP------QPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDG 489 (606)
Q Consensus 451 ~~---l~~~~------~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~ 489 (606)
++ +.+.+ ++++++|.++|+++.|++++|.++++++|++.
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhH
Confidence 95 77774 58999999999999999999999999998754
No 30
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.72 E-value=2.4e-17 Score=140.24 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=56.7
Q ss_pred hhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007363 247 WLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (606)
Q Consensus 247 ~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 307 (606)
..+|.+|+||+++|+|||||||++|.|+.+++++++++++|+.++++.++.+++.+.+..+
T Consensus 59 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 59 LITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999999998876544
No 31
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.71 E-value=5.8e-17 Score=165.20 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=121.0
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEecc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~ 450 (606)
.++|+++|+|++++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++.. .+|++ .+..+++|++|||.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEI 90 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHH
Confidence 46889999999999999999999999999999999999999999999999999999974 45554 88899999999999
Q ss_pred ccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHH
Q 007363 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVK 501 (606)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~ 501 (606)
+++.+.|++++++|.++|+++.|++++|.+++ ++|++...+++.+.+++.
T Consensus 91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999998887
No 32
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-18 Score=148.32 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecC-CCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEE
Q 007363 360 KAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFP-PKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFL 438 (606)
Q Consensus 360 ~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~-~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~ 438 (606)
|+.|.+-......++++++++|.+++++.++.++..++.+.|+ +|++|+++||.++.+|||.+|.|+++. .+|++
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~--- 78 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV--- 78 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE---
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE---
Confidence 3334443344556688999999999999999999999999999 999999999999999999999999986 56654
Q ss_pred EEecCCCEEeccccccCCCcccEE-EEcccEEEEEeCHHHHHhhhccChhh
Q 007363 439 TKLGSADMAGEIGVIFNIPQPFTV-RTKRLSQVIRLSHHHLKQMVPIDHGD 488 (606)
Q Consensus 439 ~~l~~G~~fGe~~~l~~~~~~~~v-~a~~~~~l~~l~~~~f~~ll~~~p~~ 488 (606)
..+++|++||+.+++.+.++.+++ +|.++|+++.|++++|.++++++++.
T Consensus 79 ~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~ 129 (134)
T 2d93_A 79 ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKS 129 (134)
T ss_dssp EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSS
T ss_pred EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHhc
Confidence 568999999999999999999999 99999999999999999999988653
No 33
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.70 E-value=1.4e-16 Score=150.90 Aligned_cols=127 Identities=23% Similarity=0.337 Sum_probs=115.2
Q ss_pred ccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEeccccccCC-
Q 007363 379 YLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNI- 456 (606)
Q Consensus 379 ~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~~l~~~- 456 (606)
++++.++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. .+|++..+..+++|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4667899999999999999999999999999999999999999999999974 67888899999999999999999988
Q ss_pred CcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 457 PQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 457 ~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
+++++++|.++|+++.+++++|.+++.++|++...+++.+.+++.....
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~ 130 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSE 130 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999998888877553
No 34
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.69 E-value=2.9e-16 Score=148.27 Aligned_cols=121 Identities=18% Similarity=0.307 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCC----Cc
Q 007363 384 VSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNI----PQ 458 (606)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~----~~ 458 (606)
++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. ..+|++..+..+++|++||+.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 5889999999999999999999999999999999999999999997 457888899999999999999999988 89
Q ss_pred ccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 459 PFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 459 ~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
+++++|.++|+++.|++++|.++++++|++...+++.+.+++....
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~ 126 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTT 126 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888877654
No 35
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.68 E-value=3.2e-17 Score=171.60 Aligned_cols=133 Identities=14% Similarity=0.348 Sum_probs=120.6
Q ss_pred HHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCE
Q 007363 367 SQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADM 446 (606)
Q Consensus 367 ~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~ 446 (606)
..+...+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++...+|++..+..+++|++
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~ 218 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGS 218 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCE
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCE
Confidence 34556788999999999999999999999999999999999999999999999999999999878888889999999999
Q ss_pred EeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHH
Q 007363 447 AGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQY 499 (606)
Q Consensus 447 fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~ 499 (606)
|||.+++.+.||.++++|.++|+++.|++++|.+++.++|......+..+.++
T Consensus 219 fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~ 271 (416)
T 3tnp_B 219 FGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIES 271 (416)
T ss_dssp ECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGG
T ss_pred EeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887655444433333
No 36
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-16 Score=155.58 Aligned_cols=130 Identities=18% Similarity=0.325 Sum_probs=117.8
Q ss_pred hHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEecc
Q 007363 371 FRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 371 ~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~ 450 (606)
..++++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +|. .+..+++|++|||.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~--~~~~~~~g~~fGe~ 80 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDN--KVNSSGPGSSFGEL 80 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTS--CCEEECTTCEECHH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCE--EEEecCCCCeeehh
Confidence 45688999999999999999999999999999999999999999999999999999985 454 36889999999999
Q ss_pred ccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 451 GVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 451 ~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
+++.+.|++++++|.++|+++.|++++|.+++.++|.........+.++.....
T Consensus 81 ~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~ 134 (246)
T 3of1_A 81 ALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLK 134 (246)
T ss_dssp HHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGT
T ss_pred HHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhh
Confidence 999999999999999999999999999999999999887777766666554444
No 37
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.68 E-value=8.7e-17 Score=153.53 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=118.8
Q ss_pred HhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccc
Q 007363 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIG 451 (606)
Q Consensus 372 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 451 (606)
..+++++|+|.+++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++...+|++..+..+++|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES--
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC--
Confidence 356889999999999999999999999999999999999999999999999999997677899999999999999999
Q ss_pred cccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 452 VIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 452 ~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
|++++++|.++|+++.|++++|.++++++|++...+++.+.+++.....
T Consensus 81 -----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 129 (220)
T 2fmy_A 81 -----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLT 129 (220)
T ss_dssp -----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999998888777543
No 38
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.67 E-value=7e-17 Score=140.27 Aligned_cols=93 Identities=24% Similarity=0.362 Sum_probs=56.2
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCC
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRL 328 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i 328 (606)
+|.+|+||+++|+|||||||++|.|+.|++++++++++|+++++++++.+++.+........+.++.....+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 59999999999999999999999999999999999999999999999999998876554443333222222223333455
Q ss_pred CHHHHHHHHHHHH
Q 007363 329 PEGLREQMLAHMQ 341 (606)
Q Consensus 329 ~~~l~~rv~~y~~ 341 (606)
+++.+..+++|++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 5555555555543
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.66 E-value=6.7e-16 Score=154.08 Aligned_cols=128 Identities=16% Similarity=0.289 Sum_probs=115.3
Q ss_pred HhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEee-CC-ceeEEEEecCCCEE
Q 007363 370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-NG-AEQFLTKLGSADMA 447 (606)
Q Consensus 370 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-~g-~~~~~~~l~~G~~f 447 (606)
....+++++++|.++++..+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++... +| ++..+..+++|++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 34567788999999999999999999999999999999999999999999999999998733 33 45678999999999
Q ss_pred eccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHH
Q 007363 448 GEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFI 497 (606)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~ 497 (606)
||.+++.+.|++++++|.++|+++.|++++|.+++.++|++....++.+.
T Consensus 234 Ge~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 234 GEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp CSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred cHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987766655543
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.66 E-value=4.2e-16 Score=155.58 Aligned_cols=132 Identities=20% Similarity=0.353 Sum_probs=120.6
Q ss_pred HHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 369 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
+...++++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +| ..+..+++|++||
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g--~~~~~l~~G~~fG 110 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NN--EWATSVGEGGSFG 110 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TT--EEEEEECTTCEEC
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CC--eEEEEcCCCCccc
Confidence 4456789999999999999999999999999999999999999999999999999999987 55 3688999999999
Q ss_pred ccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 449 EIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 449 e~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
|.+++.+.|+.++++|.++|+++.|++++|.+++..+|.....++..+.+++....
T Consensus 111 e~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~ 166 (291)
T 2qcs_B 111 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 166 (291)
T ss_dssp GGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGT
T ss_pred hHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhh
Confidence 99999999999999999999999999999999999999988888777766655443
No 41
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.66 E-value=1.1e-17 Score=166.25 Aligned_cols=206 Identities=13% Similarity=0.160 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHhhcceeeee--ecCCCccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhcccc
Q 007363 62 WWQTFLVVLVVYSAWASPFELAF--RKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLW 139 (606)
Q Consensus 62 ~W~~~~~~l~~~~~~~~p~~~~f--~~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~ 139 (606)
.++.+++++++.+++.+.++..- .......+..+|.++.++|.+|+++++..+ | ++|++++|
T Consensus 31 ~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~------~----------~~y~~~~w 94 (285)
T 3rvy_A 31 FFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH------R----------ISFFKDPW 94 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT------G----------GGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h----------HHHHcCCh
Confidence 67888888888888877665421 112234577899999999999999999764 2 67999999
Q ss_pred ccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHHhHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 140 FTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIR-FTYFITRLSKLICVTLFAVHSAGCF 218 (606)
Q Consensus 140 f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~ 218 (606)
.++|+++++|..+. .. ..+.++|++|++|++|+.+....++.... +......+..+++.++++...+|++
T Consensus 95 n~~Dl~~v~~~~i~-----~~----~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~ 165 (285)
T 3rvy_A 95 SLFDFFVVAISLVP-----TS----SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIM 165 (285)
T ss_dssp HHHHHHHHHHHHSC-----SS----SSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHc-----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988886432 11 23445566666655555554433332211 1111122333333444444444443
Q ss_pred HHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhccccc-ccc-cCCchh----HHHHHHHHHHHHHHHH
Q 007363 219 YFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYG-DLH-AVNTGE----KVFNMLYMLFNIGLTA 292 (606)
Q Consensus 219 ~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyG-di~-p~t~~e----~i~~i~~~i~g~~~~a 292 (606)
-+.+.. . ..++.+.++.+|+||+++|+||+||| |+. |.+..+ +.+++++++.|+++++
T Consensus 166 g~~~f~---~-------------~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~ln 229 (285)
T 3rvy_A 166 ATQLFG---E-------------RFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMIN 229 (285)
T ss_dssp HHHHHT---T-------------TCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC---c-------------ccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHH
Confidence 333321 0 11234678999999999999999999 985 776644 7888999999999999
Q ss_pred HHHHHHHHHHHhchHH
Q 007363 293 YIIGNMTNLIVHSAVR 308 (606)
Q Consensus 293 ~~i~~i~~~~~~~~~~ 308 (606)
+++|.+.+.+....++
T Consensus 230 l~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 230 LVVAICVDAMAILNQK 245 (285)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998877655443
No 42
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.66 E-value=7.7e-16 Score=150.94 Aligned_cols=124 Identities=23% Similarity=0.351 Sum_probs=113.2
Q ss_pred cCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEeccccccCC-Ccc
Q 007363 382 QGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNI-PQP 459 (606)
Q Consensus 382 ~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~~l~~~-~~~ 459 (606)
..++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++.. .+|++..+..+++|++||+.+++.+. +++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~ 134 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 134 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence 5589999999999999999999999999999999999999999999974 67888899999999999999999988 899
Q ss_pred cEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 460 FTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 460 ~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
++++|.++|+++.|++++|.+++.++|++...+++.+.+++.....
T Consensus 135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~ 180 (260)
T 3kcc_A 135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSE 180 (260)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888876553
No 43
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.65 E-value=2.1e-16 Score=151.11 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=116.8
Q ss_pred HhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccc
Q 007363 374 TVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVI 453 (606)
Q Consensus 374 ~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l 453 (606)
+++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++...+|++..+..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence 367889999999999999999999999999999999999999999999999999866789998999999999999
Q ss_pred cCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 454 FNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 454 ~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
.+++++++|.++|+++.|++++|.++++++|++...+++.+.+++.....
T Consensus 76 --~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~ 125 (222)
T 1ft9_A 76 --MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMR 125 (222)
T ss_dssp --SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999888877653
No 44
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.2e-16 Score=150.71 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=108.1
Q ss_pred HhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEec
Q 007363 370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGE 449 (606)
Q Consensus 370 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 449 (606)
....+++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++...++ .+..+++|++|||
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~~~~l~~g~~fGe 198 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---VINKLKDHDYFGE 198 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---EEEEEETTCEECH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---eEEEcCCCCcccH
Confidence 4456788999999999999999999999999999999999999999999999999999873322 6889999999999
Q ss_pred cccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhH
Q 007363 450 IGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDG 489 (606)
Q Consensus 450 ~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~ 489 (606)
.+++.+.||.++++|.++|+++.|++++|.+++..+|++.
T Consensus 199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999988754
No 45
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.65 E-value=3.6e-16 Score=148.50 Aligned_cols=128 Identities=9% Similarity=0.071 Sum_probs=111.1
Q ss_pred hhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccC
Q 007363 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFN 455 (606)
Q Consensus 377 ~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~ 455 (606)
.-|+|+..++...+.++..++.+.|++|++|+.+||.++.+|+|.+|.|+++. ..+|++..+..+++|++||+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~ 82 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS 82 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC
Confidence 34788889999999999999999999999999999999999999999999997 45788889999999999999999887
Q ss_pred C-CcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 456 I-PQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 456 ~-~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
. ++.++++|.++|+++.|++++|.++++++|++...+++.+.+++....
T Consensus 83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~ 132 (213)
T 1o5l_A 83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVS 132 (213)
T ss_dssp SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999999999999999999999988887654
No 46
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.64 E-value=2.2e-15 Score=133.26 Aligned_cols=113 Identities=22% Similarity=0.339 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHH
Q 007363 201 LSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFN 280 (606)
Q Consensus 201 ~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~ 280 (606)
.+..++.++++.+++++++|.... .| .|.+|+||+++|+|||||||++|.|..+++++
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e-------~~---------------~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~ 83 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVE-------GL---------------RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFT 83 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-------CC---------------CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------CC---------------CHHHHHHHHHHHHHccCCCCCCCCCccHHHHH
Confidence 344455555666667777775431 12 58999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHhc----hHHHHHHHHHHHHHHHHhhhCCCCHHHHHH
Q 007363 281 MLYMLFNIGLTAYIIGNMTN------LIVHS----AVRTLFMRNAINEILRYGSKNRLPEGLREQ 335 (606)
Q Consensus 281 i~~~i~g~~~~a~~i~~i~~------~~~~~----~~~~~~~~~~~~~~~~~m~~~~i~~~l~~r 335 (606)
++++++|++++++.++.+++ +.... +....+..++++++++++++++.|++|+.|
T Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 84 ILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 99999999999999999876 33322 333344556788888999999999988765
No 47
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.64 E-value=3.5e-16 Score=163.71 Aligned_cols=135 Identities=13% Similarity=0.235 Sum_probs=112.2
Q ss_pred HhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeC-------CceeEEEEec
Q 007363 370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKN-------GAEQFLTKLG 442 (606)
Q Consensus 370 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~-------g~~~~~~~l~ 442 (606)
.+..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.... |++..+..++
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~ 343 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCF 343 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEEC
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeC
Confidence 345678899999999999999999999999999999999999999999999999999987332 6777899999
Q ss_pred CCCEEeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 443 SADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 443 ~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
+|++|||.+++.+.||.++++|.++|+++.|++++|.+++..+|++....+..+.+++..+.
T Consensus 344 ~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~~ 405 (416)
T 3tnp_B 344 RGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALF 405 (416)
T ss_dssp TTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC------------
T ss_pred CCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988887777777766644
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=160.99 Aligned_cols=132 Identities=17% Similarity=0.306 Sum_probs=118.4
Q ss_pred HHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEee-CCc-eeEEEEecCCCE
Q 007363 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-NGA-EQFLTKLGSADM 446 (606)
Q Consensus 369 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-~g~-~~~~~~l~~G~~ 446 (606)
..+..+++++++|.++++..+..++..++.+.|++|++|+++||.++.+|||.+|.|+++... +|. +..+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 345568889999999999999999999999999999999999999999999999999999742 333 456889999999
Q ss_pred EeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHH
Q 007363 447 AGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYV 500 (606)
Q Consensus 447 fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l 500 (606)
|||.+++.+.||.++++|.++|+++.|++++|.+++..+|++.+..++.+.+.+
T Consensus 324 fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 324 FGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp ECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred echHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988777776665544
No 49
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=161.47 Aligned_cols=132 Identities=20% Similarity=0.329 Sum_probs=120.7
Q ss_pred HHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 369 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
+...++++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +|+ .+..+++|++||
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~--~v~~l~~G~~fG 201 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE--WVTNISEGGSFG 201 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE--EEEEEESSCCBC
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe--EeeeCCCCCEEE
Confidence 4456789999999999999999999999999999999999999999999999999999996 554 677899999999
Q ss_pred ccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 449 EIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 449 e~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
|.+++.+.|+.++++|.++|+++.|++++|.+++.++|.....++..+.+++....
T Consensus 202 e~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~ 257 (381)
T 4din_B 202 ELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 257 (381)
T ss_dssp GGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTT
T ss_pred chHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999988888777776665544
No 50
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.62 E-value=1.5e-15 Score=148.00 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=117.8
Q ss_pred HhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEecccc
Q 007363 374 TVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGV 452 (606)
Q Consensus 374 ~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~ 452 (606)
++.+...+..++++.++.++..++.+.|++|++|+.+|+.++.+|+|.+|.|+++. ..+|++..+..+++|++||+ +
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 44455555899999999999999999999999999999999999999999999997 46788889999999999999 7
Q ss_pred ccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 453 IFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 453 l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
+.+. ++++++|.++|+++.+++++|.+++.++|++...+++.+.+++.....
T Consensus 88 l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~ 139 (250)
T 3e6c_C 88 YPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYAR 139 (250)
T ss_dssp SCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 7778 999999999999999999999999999999999999999888877553
No 51
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.61 E-value=2.5e-16 Score=168.41 Aligned_cols=136 Identities=19% Similarity=0.223 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEe-eCCc--
Q 007363 358 LPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY-KNGA-- 434 (606)
Q Consensus 358 Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~-- 434 (606)
.|+..|.+...+...+.++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++.. .+|.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 5667777777778888999999999999999999999999999999999999999999999999999999973 4554
Q ss_pred eeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHH
Q 007363 435 EQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMN 494 (606)
Q Consensus 435 ~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 494 (606)
+..+..+++|++|||.+ +.+.|++++++|.++|+++.|++++|.+++.++|++...+++
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~ 165 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLA 165 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSC
T ss_pred ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHH
Confidence 47899999999999999 999999999999999999999999999999999987665543
No 52
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.60 E-value=3.7e-15 Score=130.46 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHH
Q 007363 200 RLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVF 279 (606)
Q Consensus 200 ~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~ 279 (606)
.++..++.+++++++.+++++.++... +.+....|.+|+||+++|+|||||||++|.|..++++
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~----------------~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~ 70 (139)
T 3eff_K 7 AAGAATVLLVIVLLAGSYLAVLAERGA----------------PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 70 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSC----------------TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC----------------CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHH
Confidence 344555566666677788888776321 1223357999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007363 280 NMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (606)
Q Consensus 280 ~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 307 (606)
+++++++|+++++++++.+++.+.+..+
T Consensus 71 ~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 71 AVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887765443
No 53
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.57 E-value=2.6e-14 Score=138.09 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=108.8
Q ss_pred cCCCHHHHHHHHH--hccceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCCCc
Q 007363 382 QGVSVDLIAQMVS--EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQ 458 (606)
Q Consensus 382 ~~~~~~~l~~l~~--~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~~~ 458 (606)
++++++.++++.. .++.+.|++|++|+.+||.++.+|+|.+|.|+++. ..+|++.++..+ +|++||+.+++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 4678899998875 59999999999999999999999999999999997 467888888888 9999999999998875
Q ss_pred --ccEEEEc-ccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 459 --PFTVRTK-RLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 459 --~~~v~a~-~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
.+++.|. ++|+++.|++++|.+++.++|++...+++.+.+++....
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 129 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSL 129 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 7788888 599999999999999999999999999999888887754
No 54
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.57 E-value=1.9e-14 Score=139.42 Aligned_cols=119 Identities=13% Similarity=0.203 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcc---ceecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCCC--cc
Q 007363 386 VDLIAQMVSEMK---AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIP--QP 459 (606)
Q Consensus 386 ~~~l~~l~~~~~---~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~~--~~ 459 (606)
++.++.++.... .+.|++|++|+.+|+.++.+|+|.+|.|+++. ..+|++..+..+++|++||+.+++.+.+ +.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677888888888 99999999999999999999999999999997 5678888999999999999999999887 45
Q ss_pred cEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 460 FTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 460 ~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
++++|.++|+++.|++++|.+++.++|++...+++.+.+++....
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~ 154 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTE 154 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998888876654
No 55
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.57 E-value=9.8e-15 Score=155.98 Aligned_cols=124 Identities=13% Similarity=0.243 Sum_probs=107.9
Q ss_pred HHhHhHhhhhccccCCCHHHHHHHHHhccc-eecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEE
Q 007363 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKA-EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 369 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~-~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 447 (606)
+...+.++++++|.+++++.+..++..++. +.|++|++|+++||.++.+|||.+|.|+++. +|. ..+..+++|++|
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~~~-~~~~~l~~G~~f 409 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI--YGK-GVVCTLHEGDDF 409 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE--TTT-EEEEEEETTCEE
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE--cCC-eeEEEecCCCEE
Confidence 345678999999999999999999999985 4999999999999999999999999999987 333 378899999999
Q ss_pred eccccccCCCcccEEEEcc-cEEEEEeCHHHHHhhhccChhhHHHHHHH
Q 007363 448 GEIGVIFNIPQPFTVRTKR-LSQVIRLSHHHLKQMVPIDHGDGKKIMNN 495 (606)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~-~~~l~~l~~~~f~~ll~~~p~~~~~~~~~ 495 (606)
||.+++.+.|+.++++|.+ +|+++.|++++|.+++.++|+....+.+.
T Consensus 410 Ge~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp CGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred EEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 9999999999999999998 79999999999999999999987776544
No 56
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.55 E-value=8.2e-15 Score=170.59 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=112.6
Q ss_pred HHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEee---CCceeEEE
Q 007363 363 RSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK---NGAEQFLT 439 (606)
Q Consensus 363 r~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~---~g~~~~~~ 439 (606)
|.+-..++..+.|+++++|+++++..+.+||..|+.+.|++|++|+++||.++++|+|++|.|.|+..+ ++.+.++.
T Consensus 32 Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~ 111 (999)
T 4f7z_A 32 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTIC 111 (999)
T ss_dssp CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEE
Confidence 433333455678999999999999999999999999999999999999999999999999999999732 34466789
Q ss_pred EecCCCEEeccccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHH
Q 007363 440 KLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGK 490 (606)
Q Consensus 440 ~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~ 490 (606)
.+++|++||| +++.+.||++|++|.++|++++|++++|..++.++|+...
T Consensus 112 ~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 112 TLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp EEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred EecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 9999999999 8999999999999999999999999999999998876543
No 57
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.55 E-value=5.9e-15 Score=121.54 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHH
Q 007363 201 LSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFN 280 (606)
Q Consensus 201 ~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~ 280 (606)
++..++.+++++.+.++++++++... +.+.+..|.+|+||+++|+|||||||++|.|+.+++++
T Consensus 8 ~l~~~~~~~~~~~~~a~~~~~~E~~~----------------~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~ 71 (103)
T 2k1e_A 8 AQKAEEELQKVLEEASKKAVEAERGA----------------PGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVA 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS----------------TTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCC----------------CCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHH
Confidence 44455556666677888888887421 12233579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007363 281 MLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (606)
Q Consensus 281 i~~~i~g~~~~a~~i~~i~~~~~~~~~ 307 (606)
++.+++|+.++++.++.+++.+.+..+
T Consensus 72 ~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 72 EQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp HHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776544
No 58
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.49 E-value=6.4e-14 Score=154.80 Aligned_cols=133 Identities=14% Similarity=0.255 Sum_probs=115.3
Q ss_pred HHHHhhCCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhcc-ceecCCCceEEecCCCCCeEEEEEEcEEEEEEe
Q 007363 352 EEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMK-AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIY 430 (606)
Q Consensus 352 ~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~-~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~ 430 (606)
+.+|.. |+..|.+...+...+.++++++|++++++.++.++..++ .+.|++|++|+++||.++.+|+|.+|.|+++.
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~- 89 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI- 89 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEE-
Confidence 344433 333344444445567899999999999999999999998 78999999999999999999999999999997
Q ss_pred eCCceeEEEEecCCCEEeccccccCCCcccEEEEcc-cEEEEEeCHHHHHhhhccChhh
Q 007363 431 KNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKR-LSQVIRLSHHHLKQMVPIDHGD 488 (606)
Q Consensus 431 ~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~-~~~l~~l~~~~f~~ll~~~p~~ 488 (606)
.|+ ..+..+++|++|||.+++.+.+++++++|.+ +|+++.|++++|.++++++|+.
T Consensus 90 -~g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 90 -YGK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp -TTT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred -eCC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 344 5788999999999999999999999999999 5999999999999999999877
No 59
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.48 E-value=2.3e-13 Score=113.84 Aligned_cols=61 Identities=30% Similarity=0.483 Sum_probs=53.6
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRT 309 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~ 309 (606)
+|.+|+||+++|+|||||||++|.|..+++++++.+++|+.++++.++.+++.+...+...
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999998886554433
No 60
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.46 E-value=3.2e-13 Score=126.03 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=91.9
Q ss_pred eecCCCceEEecCCCCCeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHHH
Q 007363 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHH 477 (606)
Q Consensus 399 ~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~ 477 (606)
+.|++|++|+++||+++.+|+|.+|.|+++. ..+|++..+..+++|++||| +++.+.|++++++|.++|+++.|++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5799999999999999999999999999987 45788888999999999999 999999999999999999999999999
Q ss_pred HHhhhccChhhHHHHHHHHHHHHHhhhh
Q 007363 478 LKQMVPIDHGDGKKIMNNFIQYVKGLKQ 505 (606)
Q Consensus 478 f~~ll~~~p~~~~~~~~~~~~~l~~~~~ 505 (606)
|. |++...+++.+.+++.....
T Consensus 81 ~~------p~~~~~~~~~l~~~l~~~~~ 102 (195)
T 3b02_A 81 MD------HEALHRVARNLARQMRRVQA 102 (195)
T ss_dssp CC------HHHHHHHHHHHHHHHHHHHH
T ss_pred cC------HHHHHHHHHHHHHHHHHHHH
Confidence 98 99999999988888776553
No 61
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.43 E-value=2.7e-13 Score=157.86 Aligned_cols=113 Identities=16% Similarity=0.271 Sum_probs=101.1
Q ss_pred HHhHhHhhhhccccCCCHHHHHHHHHhccce-ecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEE
Q 007363 369 HLFRGTVEKTYLFQGVSVDLIAQMVSEMKAE-YFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 369 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~-~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 447 (606)
+...+.++++++|++++...+++|+..+..+ .+.+|++|++|||.++.+|||++|.|+|+.. +. ..+..+++||+|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~--~~-~~v~~L~~Gd~F 409 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY--GK-GVVCTLHEGDDF 409 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEET--TT-EEEEEEETTCEE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEc--CC-cceEEecCCCcc
Confidence 3446778899999999999999999999865 5678999999999999999999999999873 32 257899999999
Q ss_pred eccccccCCCcccEEEEccc-EEEEEeCHHHHHhhhcc
Q 007363 448 GEIGVIFNIPQPFTVRTKRL-SQVIRLSHHHLKQMVPI 484 (606)
Q Consensus 448 Ge~~~l~~~~~~~~v~a~~~-~~l~~l~~~~f~~ll~~ 484 (606)
||.+++++.||.+|++|.++ |+++++++++|.+++.+
T Consensus 410 GElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp CGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred cchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 99999999999999999985 99999999999999855
No 62
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.42 E-value=5.8e-13 Score=104.34 Aligned_cols=54 Identities=30% Similarity=0.597 Sum_probs=51.7
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLI 302 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~ 302 (606)
.|.+|+||+++|+|||||||++|.|..+|+++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999998765
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.40 E-value=1.1e-12 Score=106.38 Aligned_cols=56 Identities=36% Similarity=0.577 Sum_probs=53.0
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~ 304 (606)
.|.+|+||+++|+|||||||++|.|..+++++++.+++|+.++++.++.++..++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 58999999999999999999999999999999999999999999999999877654
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.37 E-value=2.8e-15 Score=135.10 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=58.0
Q ss_pred chhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 007363 246 IWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRT 309 (606)
Q Consensus 246 ~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~ 309 (606)
....|.+|+||+++|+|||||||++|.|..+++++++++++|+++++++++.+++.+.....+.
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999998887665544
No 65
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.36 E-value=1.5e-12 Score=122.13 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=91.4
Q ss_pred HHHhccceecCCCceEEecCCCC--CeEEEEEEcEEEEEE-eeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccE
Q 007363 392 MVSEMKAEYFPPKVEIILQNEIP--TDLYIVVSGAVDVLI-YKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLS 468 (606)
Q Consensus 392 l~~~~~~~~~~~ge~I~~~g~~~--~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~ 468 (606)
++..++.+.|++|++|+.+||++ +.+|+|.+|.|+++. ..+|++..+..+++|++||+ +++.+.+++++++|.++|
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~ 79 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV 79 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence 35678889999999999999999 999999999999987 45788888999999999999 989999999999999999
Q ss_pred EEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363 469 QVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK 504 (606)
Q Consensus 469 ~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~ 504 (606)
+++.+ +++|. |++...+++.+.+++....
T Consensus 80 ~v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~ 108 (202)
T 2zcw_A 80 RLEPL-PENPD------PELLKDLAQHLSQGLAEAY 108 (202)
T ss_dssp EEEEC-CSSCC------HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEE-hHhcC------HHHHHHHHHHHHHHHHHHH
Confidence 99999 98876 8888888888887776654
No 66
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.28 E-value=7.9e-12 Score=119.55 Aligned_cols=205 Identities=14% Similarity=0.209 Sum_probs=117.4
Q ss_pred HhHHHHHHHHHHHHHhhcceeeeeecC--CCccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccc
Q 007363 61 RWWQTFLVVLVVYSAWASPFELAFRKA--ATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRL 138 (606)
Q Consensus 61 ~~W~~~~~~l~~~~~~~~p~~~~f~~~--~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~ 138 (606)
..++.++.++++.+++.+..+. .+.. ....+..+|.++.++|.+|+++|+... | -.++|++++
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~------~--------~~~~y~~~~ 76 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGE------K--------QKADFFKSG 76 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CH
T ss_pred chHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc------C--------chhHHhcCC
Confidence 3578899999999998877665 2211 133567899999999999999998764 1 126899999
Q ss_pred cccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHHhHhhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 139 WFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIR-FTYFITRLSKLICVTLFAVHSAGC 217 (606)
Q Consensus 139 ~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac 217 (606)
|.++|++.++|..+... .+.....+|++|++|++|+.+..+.++.... .......+..+...++++...+|+
T Consensus 77 wni~D~~~v~~~~i~~~-------~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~ 149 (229)
T 4dxw_A 77 WNIFDTVIVAISLIPIP-------NNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYAT 149 (229)
T ss_dssp HHHHHHHHHHHTTCC---------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcC-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877665532110 0122334455555555555544443332222 111223344444444444444455
Q ss_pred HH-HHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccc----cCCchhHHHH-HHHHHHHHHHH
Q 007363 218 FY-FYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLH----AVNTGEKVFN-MLYMLFNIGLT 291 (606)
Q Consensus 218 ~~-~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~----p~t~~e~i~~-i~~~i~g~~~~ 291 (606)
+- ++.+. .+++.++++..|++|.+.++|+.||+|+. ..++...++- .++++.+.++.
T Consensus 150 ~g~~lf~~-----------------~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~l 212 (229)
T 4dxw_A 150 MGAILFGN-----------------DDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITIL 212 (229)
T ss_dssp HHHHHTTT-----------------TSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-----------------CCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 33 33321 11234678999999999999999999863 2233444444 44444556777
Q ss_pred HHHHHHHHHHHHh
Q 007363 292 AYIIGNMTNLIVH 304 (606)
Q Consensus 292 a~~i~~i~~~~~~ 304 (606)
.++++.+.+-+.+
T Consensus 213 Nlfiavi~~~f~~ 225 (229)
T 4dxw_A 213 NLVIAILVDVVIQ 225 (229)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7787777665544
No 67
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.19 E-value=3.2e-11 Score=118.64 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHH
Q 007363 208 TLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFN 287 (606)
Q Consensus 208 ~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g 287 (606)
.+++..++|++|+..+.. ...+....|.+|+||+++|+|||||||++|.++.+++++++.+++|
T Consensus 57 ~~~~~l~fa~ly~~~~~~----------------~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G 120 (301)
T 1xl4_A 57 YLVTNALFALAYLACGDV----------------IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCG 120 (301)
T ss_dssp HHHHHHHHHHHHHHTCSC----------------STTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc----------------cCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHH
Confidence 344456678886655410 0112345799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007363 288 IGLTAYIIGNMTNLIVH 304 (606)
Q Consensus 288 ~~~~a~~i~~i~~~~~~ 304 (606)
++++|+++|.+.+.+..
T Consensus 121 ~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 121 MLGLAVAASLIYARFTR 137 (301)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999988876643
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.13 E-value=6.9e-11 Score=117.39 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=55.1
Q ss_pred hhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007363 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (606)
Q Consensus 248 ~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~ 306 (606)
..|.+|+||+++|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+....
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999988877554
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.09 E-value=3.3e-10 Score=112.18 Aligned_cols=57 Identities=25% Similarity=0.406 Sum_probs=54.0
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHS 305 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~ 305 (606)
.|.+|+||+++|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999998877654
No 70
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.08 E-value=9.6e-10 Score=107.44 Aligned_cols=56 Identities=20% Similarity=0.437 Sum_probs=53.7
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~ 304 (606)
+|.+|+||+++|+|||||||++|.|..+++++++++++|+.+++++++.+++.+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999987754
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.96 E-value=1e-09 Score=107.21 Aligned_cols=60 Identities=28% Similarity=0.430 Sum_probs=54.2
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEK------VFNMLYMLFNIGLTAYIIGNMTNLIVHSAVR 308 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~------i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~ 308 (606)
.|.+|+||+++|+|||||||++|.+..++ +++++++++|+++++++++.+++.+....++
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999887 5999999999999999999999887765443
No 72
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.92 E-value=4.9e-09 Score=103.70 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCC----CCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccC--CchhHHH
Q 007363 206 CVTLFAVHSAGCFYFYLAAHHKIP----ENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAV--NTGEKVF 279 (606)
Q Consensus 206 ~~~~~~~h~~ac~~~~i~~~~~~~----~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~--t~~e~i~ 279 (606)
..+++...++|++|++++...++. +.+|.. -......+.+|+||+++|+|||||||++|. ++.++++
T Consensus 51 ~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~-------Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l 123 (340)
T 3sya_A 51 MVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTP-------CVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIIL 123 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCC-------SBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccccc-------hhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHH
Confidence 334444557899999887532221 112211 012235789999999999999999999997 6889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007363 280 NMLYMLFNIGLTAYIIGNMTNLIVHSAV 307 (606)
Q Consensus 280 ~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 307 (606)
+.+.+++|+++.|+++|.+.+-+....+
T Consensus 124 ~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 124 LLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 9999999999999999999887765443
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.88 E-value=7.2e-09 Score=99.67 Aligned_cols=55 Identities=24% Similarity=0.535 Sum_probs=51.7
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~ 303 (606)
+|.+|+||+++|+|||||||++|.|..+++++++.+++|+.+++++++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999876543
No 74
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.86 E-value=4.6e-09 Score=114.42 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHH
Q 007363 200 RLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVF 279 (606)
Q Consensus 200 ~~~~l~~~~~~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~ 279 (606)
.+...++.+++++++.+|+|+++....+.. . ..|.+|+||+++|+|||||||++|.|..++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~---------------~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~ 81 (565)
T 4gx0_A 19 VLLLYCAFLLVMLLAYASIFRYLMWHLEGR--A---------------YSFMAGIYWTITVMTTLGFGDITFESDAGYLF 81 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C---------------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C---------------CchhhhhheeeeeeeeecCCCcCCCCccHHHH
Confidence 455556666666777777777665311111 1 15889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH
Q 007363 280 NMLYMLFNIGLTAYIIGN-MTNLI 302 (606)
Q Consensus 280 ~i~~~i~g~~~~a~~i~~-i~~~~ 302 (606)
+++++++|++++++.++. +.+.+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 82 ASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 44444
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.86 E-value=5.2e-09 Score=100.65 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=51.2
Q ss_pred hhhhHhHhhhhhhhcccccccccCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTG-------EKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~-------e~i~~i~~~i~g~~~~a~~i~~i~~~~~~ 304 (606)
.|++|+||+++|+|||||||++|.+.. .++++++++++|+++++++++.++++...
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999985 49999999999999999999999876543
No 76
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.78 E-value=1.3e-08 Score=100.84 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccC-----CCCceeccccCCcccCcchhhhhhHhHhhhhhhhccccccccc--CCchhHH
Q 007363 206 CVTLFAVHSAGCFYFYLAAHHKI-----PENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHA--VNTGEKV 278 (606)
Q Consensus 206 ~~~~~~~h~~ac~~~~i~~~~~~-----~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p--~t~~e~i 278 (606)
..+++..-++|.+|++++...++ ..++|..- ......+.+|+||+++|+|||||||+.| .++.+++
T Consensus 53 ~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~C-------v~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~ 125 (343)
T 3spc_A 53 LAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPC-------VLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVF 125 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCS-------EETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccccccc-------ccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHH
Confidence 44455556678888887653221 12223110 1123578999999999999999999986 4899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007363 279 FNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (606)
Q Consensus 279 ~~i~~~i~g~~~~a~~i~~i~~~~~~~~ 306 (606)
++.+.+++|+++.|.++|.+.+-+....
T Consensus 126 l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 126 MVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999887776543
No 77
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.66 E-value=9e-09 Score=88.51 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=72.2
Q ss_pred HhHHHHHHHHHHHHHhhcceeeeeecC--CCccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhccc
Q 007363 61 RWWQTFLVVLVVYSAWASPFELAFRKA--ATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRL 138 (606)
Q Consensus 61 ~~W~~~~~~l~~~~~~~~p~~~~f~~~--~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~ 138 (606)
+.++.+++++++.+++.+..+...+.. ....+..+|.++.++|.+|+++|+..+ + + .++|++
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~-------~----~~~y~~-- 69 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS---G-------D----PAGYVK-- 69 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---T-------S----TTTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-------C----HHHHHH--
Confidence 357888888888888877666532222 234577899999999999999999864 1 1 267998
Q ss_pred cccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHH
Q 007363 139 WFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTR 187 (606)
Q Consensus 139 ~f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~ 187 (606)
|.++|+++++|+...... + +.+..+|++|++|++|+.|+.+.
T Consensus 70 ~niiDllailp~~~~~~~-~------~~l~~lr~lRllRv~Rvlkl~r~ 111 (132)
T 1ors_C 70 KTLYEIPALVPAGLLALI-E------GHLAGLGLFRLVRLLRFLRILLI 111 (132)
T ss_dssp TCGGGTGGGSCHHHHHHH-H------HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-c------chHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999865533 1 22344555555555555555443
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.66 E-value=7.8e-09 Score=90.12 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHhhcceeeeeecC--CCccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHHHHHhhcccc
Q 007363 62 WWQTFLVVLVVYSAWASPFELAFRKA--ATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLW 139 (606)
Q Consensus 62 ~W~~~~~~l~~~~~~~~p~~~~f~~~--~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i~~~Yl~~~~ 139 (606)
.|+.++.++++.+++++.++...... ....+..+|.++.++|.+|+++|+..+ + + .++|+++
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~-------~----k~~f~~~-- 85 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS---G-------D----PAGYVKK-- 85 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T-------C----HHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-------c----HHHHHHH--
Confidence 47888888888877777666544322 233577899999999999999999875 1 1 2689997
Q ss_pred ccccccccchHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHHhH
Q 007363 140 FTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLE 189 (606)
Q Consensus 140 f~iDlls~iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~ 189 (606)
.++|+++++|+...... . ..+.++|++|++|++|+.++.....
T Consensus 86 ~iiDllailP~~~~~~~-~------~~lr~lRvlRllRv~Rllrl~r~~~ 128 (147)
T 2kyh_A 86 TLYEIPALVPAGLLALI-E------GHLAGLGLFRLVRLLRFLRILLIIS 128 (147)
T ss_dssp STTTHHHHCCHHHHHHH-H------HHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-H------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999865432 1 2245566666666666665554443
No 79
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.52 E-value=8.6e-09 Score=104.51 Aligned_cols=57 Identities=28% Similarity=0.610 Sum_probs=51.3
Q ss_pred hhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007363 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHS 305 (606)
Q Consensus 249 ~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~ 305 (606)
.|.+|+||+++|+|||||||++|.|..+++++++++++|++++++.++.+++.+.+.
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999988766543
No 80
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=87.17 E-value=0.75 Score=51.82 Aligned_cols=56 Identities=13% Similarity=0.340 Sum_probs=46.0
Q ss_pred hhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007363 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304 (606)
Q Consensus 248 ~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~ 304 (606)
.....++|+++.+++..| ++..|.+...|++.++++++++++.+...+++++.+..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346789999999999988 78899999999999999999999999999999998874
No 81
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=74.05 E-value=6.3 Score=37.77 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=9.6
Q ss_pred hhhhhhhHHHhHHHHHHHhH
Q 007363 170 LNLLRLWRLRRVGELFTRLE 189 (606)
Q Consensus 170 l~llrllRl~r~~~~~~~l~ 189 (606)
++++|++|++|+.|+.+...
T Consensus 113 ~~~lr~~RilR~lrl~~~~~ 132 (285)
T 3rvy_A 113 FEILRVLRVLRLFRLVTAVP 132 (285)
T ss_dssp CTHHHHHGGGGGGHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544333
No 82
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=71.05 E-value=20 Score=32.92 Aligned_cols=68 Identities=12% Similarity=0.248 Sum_probs=50.5
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
+....+.||+.+-..-.+.+.+.+|++|++++.. +|++ ..+++||++=-- .+.+ -.++|.+++.++.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i--~~~~---~~l~~Gd~~~~p---~~~~--H~~~a~~~~~~l~i 106 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI--ENNK---KTISNGDFLEIT---ANHN--YSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE--SSCE---EEEETTEEEEEC---SSCC--EEEEESSSEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE--CCEE---EEECCCCEEEEC---CCCC--EEEEECCCcEEEEE
Confidence 4456789999888777788899999999999986 4543 468898764321 1334 46678899999877
No 83
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=70.67 E-value=27 Score=27.88 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=44.8
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEE
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (606)
+....++||..+-..-.....+++|++|++++.. +|+ ...+++||.+=-- .+.+. ++++.+++.++.
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~~~~H--~~~~~~~~~~~~ 104 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA---QRRLHQGDLLYLG---AGAAH--DVNAITNTSLLV 104 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE---EEEECTTEEEEEC---TTCCE--EEEESSSEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE---EEEECCCCEEEEC---CCCcE--EEEeCCCcEEEE
Confidence 3456678888876665566789999999999976 554 3578999875422 13343 456667765443
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=66.84 E-value=40 Score=26.47 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=43.1
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
+....++||..+-..-.....+++|++|.+.+.. +|+ ...+++|+.+=-- .+.+. ..++.++++++.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~~~v 109 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE---TYRVAEGQTIVMP---AGIPH--ALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE---EEEEETTCEEEEC---TTSCE--EEEESSCEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCCE--EEEECCCceEEEE
Confidence 3445678887765444445689999999999875 554 2468899876421 13333 3455566666554
No 85
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=66.46 E-value=20 Score=28.37 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=39.1
Q ss_pred ecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 400 YFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 400 ~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
.+.||..+-........+++|++|.+.+.. +|+ ...+++||.+=-- .+.+.. +++.+++.++.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~---~~~l~~Gd~i~i~---~~~~H~--~~~~~~~~~~~i 107 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ---KIDLVPEDVLMVP---AHKIHA--IAGKGRFKMLQI 107 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE---EEEECTTCEEEEC---TTCCBE--EEEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCE---EEEecCCCEEEEC---CCCcEE--EEeCCCcEEEEE
Confidence 345665543334455679999999999876 443 3478999865322 244444 334456666544
No 86
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=64.88 E-value=17 Score=33.37 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=5.8
Q ss_pred cchhhhHHHHHHH
Q 007363 91 SLLIVDLVVDFFF 103 (606)
Q Consensus 91 ~~~~~~~~~~~~f 103 (606)
.|..+|.++.+..
T Consensus 76 ~wni~D~~~v~~~ 88 (229)
T 4dxw_A 76 GWNIFDTVIVAIS 88 (229)
T ss_dssp HHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHH
Confidence 3444554444433
No 87
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=64.10 E-value=38 Score=26.66 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=43.4
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
+....++||..+-..-.....+++|++|.+++.. +|+ ...+.+|+.+=-- .+.+. .+++.+++.++.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~l~v 103 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV---IKVLTAGDSFFVP---PHVDH--GAVCPTGGILIDT 103 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE---EEEECTTCEEEEC---TTCCE--EEEESSCEEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE---EEEeCCCCEEEEC---cCCce--eeEeCCCcEEEEE
Confidence 3445678887654434445679999999999876 444 3478999875322 13333 3455567776665
No 88
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=62.09 E-value=8.9 Score=40.27 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHhhCCHHHHHHHHH
Q 007363 353 EVLEDLPKAIRSSISQ 368 (606)
Q Consensus 353 ~~l~~Lp~~Lr~~i~~ 368 (606)
.-..+|.+.++.++..
T Consensus 471 s~~~el~e~~~~~~~~ 486 (514)
T 2r9r_B 471 SDYMEIQEGVNNSNED 486 (514)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 3345555555555443
No 89
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=62.02 E-value=20 Score=29.01 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=41.5
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
...+.||..+-..- ..+.+++|++|++++.. +|+ ...+++||.+---+ |.+..++... +.++++.+
T Consensus 44 ~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~--~g~---~~~l~~GD~v~ip~---g~~H~~~~~~-~~~~~l~v 109 (119)
T 3lwc_A 44 YGRYAPGQSLTETM-AVDDVMIVLEGRLSVST--DGE---TVTAGPGEIVYMPK---GETVTIRSHE-EGALTAYV 109 (119)
T ss_dssp EEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE--TTE---EEEECTTCEEEECT---TCEEEEEEEE-EEEEEEEE
T ss_pred EEEECCCCCcCccC-CCCEEEEEEeCEEEEEE--CCE---EEEECCCCEEEECC---CCEEEEEcCC-CCeEEEEE
Confidence 35567887654443 66789999999999976 554 34789999865322 4444443322 45555443
No 90
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=61.55 E-value=24 Score=28.31 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=28.7
Q ss_pred hhhhhhHhHhhhhhhhcccccccc-----cCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 007363 247 WLGYTYSIYWSIVTLTTVGYGDLH-----AVNTGEKVFNMLYMLFN-IGLTAYIIGNMTNLIV 303 (606)
Q Consensus 247 ~~~Y~~sly~a~~tlttvGyGdi~-----p~t~~e~i~~i~~~i~g-~~~~a~~i~~i~~~~~ 303 (606)
++....|+.-.+..+|+-|+.|+. ..++...++-+.++++| .++..++++.+.+-+.
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~ 98 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMA 98 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666556666777776532 22344455555555555 4455566665554443
No 91
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=58.72 E-value=13 Score=32.62 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=40.0
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
...++||...-........+.+|++|++++.. .+|+ ...+++||.+ .- .+.+..+.-...+.++++.+
T Consensus 83 ~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l-d~ge---~~~L~~GDsi-~~---~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 83 VVDMLPGKESPMHRTNSIDYGIVLEGEIELEL-DDGA---KRTVRQGGII-VQ---RGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEEECTTCBCCCBCCSEEEEEEEEESCEEEEC-GGGC---EEEECTTCEE-EE---CSCCBEEECCSSSCEEEEEE
T ss_pred EEEECCCCCCCCeecCceEEEEEEeCEEEEEE-CCCe---EEEECCCCEE-Ee---CCCcEEEEeCCCCCEEEEEE
Confidence 44566665332222333467899999999975 2243 2478999997 32 35555444444445555543
No 92
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=57.07 E-value=55 Score=28.15 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=41.4
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEE-cccEEEEEe
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRT-KRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a-~~~~~l~~l 473 (606)
...+.||..+-..-.....+++|++|.+.+.. +|+ ...+++||++=-- .+.+..+.... .+++.++.+
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~~~~H~~~n~~~~~~~~~l~i 128 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR---VEPLTPLDCVYIA---PHAWHQIHATGANEPLGFLCI 128 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE---EEEECTTCEEEEC---TTCCEEEEEESSSCCEEEEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCcEEEEeCCCCCCEEEEEE
Confidence 44566776554333446789999999999876 454 3578999876422 24454444433 445555544
No 93
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=54.81 E-value=49 Score=25.07 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=40.6
Q ss_pred cceecCCCceEEecCCCC-CeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 397 KAEYFPPKVEIILQNEIP-TDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 397 ~~~~~~~ge~I~~~g~~~-~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
....+.||..+-..-... +.+++|++|.+.+.. +|+ ...+++||.+=-- .+.+........+++.++.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H~~~~~~~~~~~~~~v 100 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE---EALLAPGMAAFAP---AGAPHGVRNESASPALLLVV 100 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE---EEEECTTCEEEEC---TTSCEEEECCSSSCEEEEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 345678887764433333 569999999999876 443 3478999876321 13344333222235555543
No 94
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=54.04 E-value=20 Score=32.65 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=9.3
Q ss_pred echhhhhhhhHHHhHHH
Q 007363 167 FGFLNLLRLWRLRRVGE 183 (606)
Q Consensus 167 ~~~l~llrllRl~r~~~ 183 (606)
++++|++|++|+.|+.+
T Consensus 99 lr~lRllRllR~~r~~~ 115 (223)
T 1orq_C 99 FRLVRLLRFLRILLIIS 115 (223)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666665555543
No 95
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=50.40 E-value=37 Score=29.33 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=29.7
Q ss_pred eecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 399 ~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
..+.||..+-..-.....+++|++|++++.. +|+ ...+++||++=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~---~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA---VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE---EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 3455665443333344578999999999876 554 35789998763
No 96
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=49.41 E-value=53 Score=25.42 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=32.7
Q ss_pred cceecCCCceEEec--CCC-CCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 397 KAEYFPPKVEIILQ--NEI-PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 397 ~~~~~~~ge~I~~~--g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
....+.||..+-.. -.. ...+++|++|++.+.. +|+ ...+++|+.+=
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH---TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE---EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 34567888766544 333 5689999999999876 443 34689998764
No 97
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=48.89 E-value=34 Score=27.50 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=46.5
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEccc-EEEEE--
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRL-SQVIR-- 472 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~-~~l~~-- 472 (606)
+....++||..+-..-.....+++|++|.+++.. +|+ ...+++|+.+=-- .+.+. ..++.++ +.++.
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~~l~v~ 112 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE---TRVLRPGMAYTIP---GGVRH--RARTFEDGCLVLDIF 112 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE---EEEECTTEEEEEC---TTCCE--EEECCTTCEEEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE---EEEeCCCCEEEEC---CCCcE--EeEECCCCEEEEEEE
Confidence 3456678888775554455789999999999976 443 3578999875322 23333 3334444 55443
Q ss_pred -eCHHHHHhhh
Q 007363 473 -LSHHHLKQMV 482 (606)
Q Consensus 473 -l~~~~f~~ll 482 (606)
-++++|.+.+
T Consensus 113 ~p~~~d~~~~~ 123 (126)
T 4e2g_A 113 SPPREDYARMA 123 (126)
T ss_dssp ESCCHHHHHHH
T ss_pred CCCCcchhhhh
Confidence 2445555544
No 98
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=48.88 E-value=41 Score=26.23 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=31.6
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
...+.||+.-.. .....+++|++|++.+.. .+|. ...+++||.+=
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i-~~g~---~~~l~~GD~i~ 79 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTT-EDGK---KYVIEKGDLVT 79 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEE-TTCC---EEEEETTCEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEE-CCCC---EEEECCCCEEE
Confidence 456678775444 345789999999999976 2244 34789999764
No 99
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=46.32 E-value=34 Score=29.93 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=36.0
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
+....+.||......-..++.+++|++|++++.....+.. ....+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEECCCCEEE
Confidence 4556788888765553335689999999998876333222 355899999765
No 100
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=45.72 E-value=54 Score=26.20 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=41.0
Q ss_pred ccceecCCCceEEecCCCC-CeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 396 MKAEYFPPKVEIILQNEIP-TDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~-~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
+....++||..+-..-... ..+++|++|++.+.. .+|+ ...+++||.+=- =.+.+..+.....+++.++.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~~~---~~~l~~Gd~~~i---~~~~~H~~~n~~~~~~~~l~v 112 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGI---VTHLKAGDIAIA---KPGQVHGAMNSGPEPFIFVSV 112 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC-STTC---EEEEETTEEEEE---CTTCCCEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE-CCCe---EEEeCCCCEEEE---CCCCEEEeEeCCCCCEEEEEE
Confidence 3445677887664443443 578899999998864 2443 346889987532 124455443333344555443
No 101
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=44.35 E-value=40 Score=29.26 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEec
Q 007363 413 IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGE 449 (606)
Q Consensus 413 ~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 449 (606)
..+.++++++|.+.+-..++|+. .-..+++|++|=-
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~-~~v~l~eGE~f~l 89 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRR-ERADLKEGDIFLL 89 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEE-EEEEECTTCEEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCce-eeEEECCCCEEEe
Confidence 35689999999999887555532 3457999998753
No 102
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=43.19 E-value=43 Score=29.10 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=34.7
Q ss_pred CCeEEEEEEcEEEEEEeeCC---ceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCH
Q 007363 414 PTDLYIVVSGAVDVLIYKNG---AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSH 475 (606)
Q Consensus 414 ~~~ly~I~~G~v~v~~~~~g---~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~ 475 (606)
.+.++++++|.+.+-..++| .+..-..+++|++|=--. |.|. +-++..++..+.+.+
T Consensus 54 ~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~---gvpH--sP~r~~e~v~lviEr 113 (176)
T 1zvf_A 54 TPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPG---NVPH--SPVRFADTVGIVVEQ 113 (176)
T ss_dssp SCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECT---TCCE--EEEECTTCEEEEEEE
T ss_pred CceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCC---CCCc--CCcccCCcEEEEEEe
Confidence 45899999999999876545 122345789998875332 3333 222235555555543
No 103
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=42.12 E-value=88 Score=28.38 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=46.2
Q ss_pred hccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEE-cccEEEEE
Q 007363 395 EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRT-KRLSQVIR 472 (606)
Q Consensus 395 ~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a-~~~~~l~~ 472 (606)
.+....++||+.+-..-...+.+++|++|++++.. +|+ ...+++||.+=-- .+.+. .+++ .++++++.
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~---~~~l~~Gd~i~ip---~~~~H--~~~~~~~~~~~ll 222 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK---PFIVKKGESAVLP---ANIPH--AVEAETENFKMLL 222 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE---EEEEETTEEEEEC---TTSCE--EEECCSSCEEEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE---EEEECCCCEEEEC---CCCcE--EEEeCCCCEEEEE
Confidence 34567789999876655556789999999999976 554 3478899875322 13333 4556 77776654
No 104
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=40.63 E-value=74 Score=29.38 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=45.1
Q ss_pred HhccceecCCCceEEe-cCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEE
Q 007363 394 SEMKAEYFPPKVEIIL-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (606)
Q Consensus 394 ~~~~~~~~~~ge~I~~-~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (606)
..+....++||..+=. .-......++|++|+..+.. +|+ ...+++||++--- .+.|..+.....++++.+.
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~---~~~l~~GD~~~~~---~~~pH~~~n~g~~~~~yl~ 236 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN---YYPVTAGDIIWMG---AHCPQWYGALGRNWSKYLL 236 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE---EEEEETTCEEEEC---TTCCEEEEEESSSCEEEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE---EEEcCCCCEEEEC---CCCCEEEEcCCCCCEEEEE
Confidence 3455677889986643 33445679999999998875 554 3478999986422 2445544444444555443
No 105
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=40.57 E-value=47 Score=29.28 Aligned_cols=70 Identities=10% Similarity=0.026 Sum_probs=38.5
Q ss_pred ecCCCceEE---ecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEE-EcccEEEEEe
Q 007363 400 YFPPKVEII---LQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVR-TKRLSQVIRL 473 (606)
Q Consensus 400 ~~~~ge~I~---~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~-a~~~~~l~~l 473 (606)
.++||...- ..-.....+++|++|++++....+|. .....+++||++=.- .+.++.+... ..++|+++.+
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~-~~~~~l~~GD~~~~~---~~~~H~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKEN-PKEALLPTGASMFVE---EHVPHAFTAAKGTGSAKLIAV 196 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTS-CEEEEECTTCEEEEC---TTCCEEEEESTTSCCEEEEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCC-cccEEECCCCEEEeC---CCCceEEEecCCCCCeEEEEE
Confidence 456665432 11223357899999999998722111 124579999986432 2444433322 2245666554
No 106
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=39.83 E-value=66 Score=28.59 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=35.2
Q ss_pred ccceecCCCceEEecCCC-CCeEEEEEEcEEEEEEeeCC---ceeEEEEecCCCEEe
Q 007363 396 MKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYKNG---AEQFLTKLGSADMAG 448 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~~~g---~~~~~~~l~~G~~fG 448 (606)
+....+.||...-..-.. .+.+++|++|++++.....+ .+.....+++||.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 445677888765443333 46899999999998763221 332356799999764
No 107
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=39.42 E-value=35 Score=27.58 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=30.3
Q ss_pred cCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEecc
Q 007363 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEI 450 (606)
Q Consensus 401 ~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~ 450 (606)
..||..-+.. +..++++.|++|++.+.. ++|. ...+++||.|---
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~-ddG~---~~~l~aGD~~~~P 93 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQ-ADAD---PVKIGPGSIVSIA 93 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEE-TTCC---CEEECTTEEEEEC
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEe-CCCe---EEEECCCCEEEEC
Confidence 4556544433 334589999999999975 4554 3478999987643
No 108
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=39.24 E-value=22 Score=30.38 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=28.5
Q ss_pred ecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEE
Q 007363 400 YFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 400 ~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 447 (606)
.+.||...-..-.....+++|++|++++.. +|+ ...+++||++
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~---~~~l~~Gd~i 92 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET---ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE---EEEEETTCEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEE
Confidence 445555443333334578999999999986 554 3468899875
No 109
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=38.90 E-value=70 Score=26.09 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=31.5
Q ss_pred ceecCCCceEEecCCC-CCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 398 AEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
...++||..+-..-.. ...+++|++|.+.+.. +|+ ...+++||++=
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK---DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE---EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE---EEEeCCCcEEE
Confidence 4567888765433233 3579999999999876 454 34688998763
No 110
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=36.62 E-value=64 Score=27.86 Aligned_cols=66 Identities=9% Similarity=-0.050 Sum_probs=37.7
Q ss_pred eecCC-Cce-EEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEE
Q 007363 399 EYFPP-KVE-IILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (606)
Q Consensus 399 ~~~~~-ge~-I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (606)
..++| |.. =-..-..++.+++|++|.+++.. +|+ ...+++|++|=--+ +.++.+.-...+.|+++.
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl--~g~---~~~L~~Gds~~iP~---g~~H~~~N~~d~~Arll~ 160 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV--CKN---KFLSVKGSTFQIPA---FNEYAIANRGNDEAKMFF 160 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEE--TTE---EEEEETTCEEEECT---TCEEEEEECSSSCEEEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEE--CCE---EEEEcCCCEEEECC---CCCEEEEECCCCCEEEEE
Confidence 35666 431 11122344579999999999987 554 34789999875332 333333333334455544
No 111
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=36.49 E-value=69 Score=25.75 Aligned_cols=68 Identities=16% Similarity=-0.014 Sum_probs=38.7
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
...++||...-..-.....+++|++|.+++.. +++. ..+++|+.+=.- .+.+..+.....+++.++.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~~---~~l~~Gd~i~ip---~g~~H~~~~~~~~~~~~l~v 119 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--EQGE---ETVEEGFYIFVE---PNEIHGFRNDTDSEVEFLCL 119 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC--SSCE---EEEETTEEEEEC---TTCCEEEECCSSSCEEEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE--CCEE---EEECCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 34556666554333446689999999998875 4442 467888875322 13444333322334555443
No 112
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=36.46 E-value=98 Score=29.04 Aligned_cols=78 Identities=12% Similarity=0.022 Sum_probs=54.7
Q ss_pred hccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEE-ecCCCEEecc---ccccCCCcccEEEEcccEEE
Q 007363 395 EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTK-LGSADMAGEI---GVIFNIPQPFTVRTKRLSQV 470 (606)
Q Consensus 395 ~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~-l~~G~~fGe~---~~l~~~~~~~~v~a~~~~~l 470 (606)
.+....+.+|+..-.+-+.-+-..+++.|.+.|.. +|.. ... -+..+.|.+. ++.-+.-..+++.|.+++++
T Consensus 30 ~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~--~g~~--~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~ 105 (270)
T 2qjv_A 30 GFDVWQLXAGESITLPSDERERCLVLVAGLASVXA--ADSF--FYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLEL 105 (270)
T ss_dssp EEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE--TTEE--EEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEE
T ss_pred EEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE--CCEE--EeccccccccccCCCCcEEEECCCCEEEEEecCCceE
Confidence 35567789999887776656667889999999976 5542 222 2456677654 44445445889999999999
Q ss_pred EEeCHH
Q 007363 471 IRLSHH 476 (606)
Q Consensus 471 ~~l~~~ 476 (606)
+..+..
T Consensus 106 ~v~sAp 111 (270)
T 2qjv_A 106 AVCSAP 111 (270)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 887653
No 113
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=36.42 E-value=37 Score=25.96 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=30.2
Q ss_pred ceecCCCceEEecCCCCC-eEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 398 AEYFPPKVEIILQNEIPT-DLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~-~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
...++||...-..-.... .+++|++|.+++.. .+|. ....+.+||.+=
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~g~--~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET-PEGS--VTSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEE-TTEE--EEEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEe-CCCC--EEEEEcCCCEEE
Confidence 455677765422222333 49999999999876 2221 234789999774
No 114
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=36.03 E-value=69 Score=27.35 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=30.2
Q ss_pred ceecCCCceEE--ecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 398 AEYFPPKVEII--LQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 398 ~~~~~~ge~I~--~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
...+.||.... ..-+..+.+++|++|++++.. +++ ...+++|+.+-
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~--~~~---~~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD--DQG---EHPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE--TTE---EEEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE--CCE---EEEeCCCCEEE
Confidence 45567776431 222223689999999999986 443 34789998754
No 115
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=35.83 E-value=1.3e+02 Score=29.73 Aligned_cols=74 Identities=8% Similarity=-0.003 Sum_probs=45.4
Q ss_pred ccceecCCCceEEecCCCC-CeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 396 MKAEYFPPKVEIILQNEIP-TDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~-~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
+....+.||...-..-... +.+++|++|++++... .+|.. ....+++||++=--+ +.++.+.....++++++.+
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~-~~~~l~~GD~~~ip~---~~~H~~~n~~~~~~~~l~v 334 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHA-RTFNYQAGDVGYVPF---AMGHYVENIGDEPLVFLEI 334 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEE-EEEEEESSCEEEECT---TCBEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcE-EEEEEcCCCEEEECC---CCeEEEEECCCCCEEEEEE
Confidence 4456778888765444444 7899999999998763 34432 234789999864322 3444333333345666655
No 116
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=35.73 E-value=1e+02 Score=25.65 Aligned_cols=69 Identities=14% Similarity=0.043 Sum_probs=40.7
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
...+.||..+-..-.....+++|++|.+.+.. +++. ...+++|+.+=-- .+.+..+.....+.+.++.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~--~~~~--~~~l~~Gd~i~ip---~~~~H~~~n~~~~~~~~l~v 120 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE--RGKP--ARILKKGDVVEIP---PNVVHWHGAAPDEELVHIGI 120 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE--TTSC--CEEEETTCEEEEC---TTCCEEEEEBTTBCEEEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE--CCEE--EEEECCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 45567777553323334679999999999876 4442 1468899876422 24455444433445555544
No 117
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=34.06 E-value=1.1e+02 Score=24.34 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=42.2
Q ss_pred eecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEE--EEeCHH
Q 007363 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQV--IRLSHH 476 (606)
Q Consensus 399 ~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l--~~l~~~ 476 (606)
..+.||...-..-.....+++|++|++.+.. +|+ ...+++|+.+=-- .+.+........++++. +.++.+
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~---~~~l~~Gd~~~i~---~~~~H~~~~~~~~~~~~~~i~f~~~ 110 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE---DFPVTKGDLIIIP---LDSEHHVINNNQEDFHFYTIWWDKE 110 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE---EEEEETTCEEEEC---TTCCEEEEECSSSCEEEEEEEECHH
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE---EEEECCCcEEEEC---CCCcEEeEeCCCCCEEEEEEEECHH
Confidence 4455665332222345579999999999876 554 3468888875422 23444333332344444 455555
Q ss_pred HHHhhh
Q 007363 477 HLKQMV 482 (606)
Q Consensus 477 ~f~~ll 482 (606)
-+.+++
T Consensus 111 ~~~~~~ 116 (128)
T 4i4a_A 111 STLNFL 116 (128)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 118
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=32.86 E-value=1.2e+02 Score=26.27 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=30.8
Q ss_pred eecCCCceEEe--cCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 399 EYFPPKVEIIL--QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 399 ~~~~~ge~I~~--~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
..++||...-. .......+++|++|.+.+.. +|+ ...+++||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~---~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ---WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE---EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE---EEEeCCCCEEE
Confidence 45677776542 22334689999999999876 454 34789999763
No 119
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=32.74 E-value=66 Score=33.43 Aligned_cols=60 Identities=8% Similarity=0.100 Sum_probs=41.8
Q ss_pred HHHHHHhccceecCCCceEEecCCC-CCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEe
Q 007363 389 IAQMVSEMKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 389 l~~l~~~~~~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fG 448 (606)
+..+-..+....+.||..+-..-.+ ++.+++|++|.+.+... .+|.+.....+++||++=
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 4445556677788999866544333 57899999999998763 344444455799999764
No 120
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=32.24 E-value=91 Score=30.54 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=36.1
Q ss_pred ccceecCCCceEEecCCCC-CeEEEEEEcEEEEEEee-CCceeEEEEecCCCEEe
Q 007363 396 MKAEYFPPKVEIILQNEIP-TDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAG 448 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~-~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~fG 448 (606)
+....+.||..+-..-... +.+++|++|++.+.... +|+ .....+++||++=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEE
Confidence 4556788888765443343 78999999999987532 443 2345789999875
No 121
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=31.86 E-value=33 Score=27.97 Aligned_cols=44 Identities=7% Similarity=0.010 Sum_probs=28.5
Q ss_pred cCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEec
Q 007363 401 FPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGE 449 (606)
Q Consensus 401 ~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 449 (606)
..||..-....+ .+.+++|++|++.+.. ++|. ...+++||.+--
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~-~~g~---~~~l~~GD~~~i 99 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVD-PDGT---VHAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEEC-TTCC---EEEEETTCEEEE
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEE-CCCe---EEEECCCCEEEE
Confidence 445554433222 2689999999999875 3454 246899998753
No 122
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=31.72 E-value=75 Score=31.53 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=35.6
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEee-CCceeEEEEecCCCEEe
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAG 448 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~fG 448 (606)
+....+.||...-..-.....+++|++|++++...+ +|+. ....+++||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~-~~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCE-EEEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcE-EEEEeCCCCEEE
Confidence 344667888866444334678999999999998744 3442 234789998753
No 123
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=31.51 E-value=80 Score=32.52 Aligned_cols=55 Identities=9% Similarity=0.113 Sum_probs=38.9
Q ss_pred HhccceecCCCceEEecCCC-CCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEe
Q 007363 394 SEMKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 394 ~~~~~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fG 448 (606)
..+....+.||..+-..-.+ ++.+++|++|++++... .+|.+.....+++||++=
T Consensus 338 is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~v 394 (476)
T 1fxz_A 338 LSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLI 394 (476)
T ss_dssp CCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEE
Confidence 45566778899876544333 57899999999998763 345444455799999764
No 124
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=31.48 E-value=1.5e+02 Score=27.17 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=41.6
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
...++||...-..- .+.+.+|++|++++.. +|++ ..+++||++=-- .+.+..+... ++++++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~~---~~l~~Gd~~~~p---~~~~H~~~n~--~~~~~l~v 117 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGET---RTLREYDYVYLP---AGEKHMLTAK--TDARVSVF 117 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSCE---EEECTTEEEEEC---TTCCCEEEEE--EEEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCEE---EEECCCCEEEEC---CCCCEEEEeC--CCEEEEEE
Confidence 34567776554332 6678999999999975 5543 478999876432 2455544433 66776665
No 125
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=31.38 E-value=87 Score=30.70 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=34.3
Q ss_pred cceecCCCceEEecCCC-CCeEEEEEEcEEEEEEee-CCceeEEEEecCCCEEe
Q 007363 397 KAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAG 448 (606)
Q Consensus 397 ~~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~fG 448 (606)
....+.||...-..-.. .+.+++|++|++++.... +|+. ....+++||.+=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~-~~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV-EIADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCE-EEEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcE-EEEEEcCCCEEE
Confidence 34566788765433334 679999999999988733 3432 336799998653
No 126
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=31.25 E-value=1.2e+02 Score=22.71 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=32.4
Q ss_pred CeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeC
Q 007363 415 TDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474 (606)
Q Consensus 415 ~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~ 474 (606)
..+++|++|.+.+.. +|+ ...+++|+.+=-- .+.+... ++.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H~~--~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAF--RDQ---NITLQAGEMYVIP---KGVEHKP--MAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEEC--SSC---EEEEETTEEEEEC---TTCCBEE--EEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEE--CCE---EEEEcCCCEEEEC---CCCeEee--EcCCCCEEEEEE
Confidence 679999999998875 443 2467888865321 2444433 344678877765
No 127
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=31.03 E-value=1.1e+02 Score=28.16 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=42.4
Q ss_pred ceecCC-CceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 398 AEYFPP-KVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~-ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
...++| |..+-..-.....+++|++|.+++.. +|+ ...+++||.+---+ +.+..+.....+++.++.+
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip~---~~~H~~~n~~~~~~~~l~v 217 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV--EGC---TVEMKFGTAYFCEP---REDHGAINRSEKESKSINI 217 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEE--TTE---EEEECTTCEEEECT---TCCEEEEECSSSCEEEEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE--CCE---EEEECCCCEEEECC---CCcEEeEeCCCCCEEEEEE
Confidence 345788 87665544455679999999999876 454 23689999865332 3444433333345555443
No 128
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=30.89 E-value=81 Score=32.63 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=41.5
Q ss_pred HHHHHHhccceecCCCceEEecCCC-CCeEEEEEEcEEEEEEee-CCceeEEEEecCCCEEe
Q 007363 389 IAQMVSEMKAEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYK-NGAEQFLTKLGSADMAG 448 (606)
Q Consensus 389 l~~l~~~~~~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~fG 448 (606)
+..+-..+....+.||..+-..-.+ ++.+++|++|.+.+.... +|....-..+++||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 4455456677788999866544333 578999999999987633 34443335799999874
No 129
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=30.79 E-value=59 Score=26.79 Aligned_cols=64 Identities=11% Similarity=-0.001 Sum_probs=37.9
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
...+.||..-.. ...+.+++|++|++.+.. +|+. ..+++||.+---+ +.+.... ..++++++.+
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~--~g~~---~~l~~GD~i~~p~---g~~h~~~--~~~~~~~l~v 124 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRH--EGET---MIAKAGDVMFIPK---GSSIEFG--TPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE--TTEE---EEEETTCEEEECT---TCEEEEE--EEEEEEEEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEE--CCEE---EEECCCcEEEECC---CCEEEEE--eCCCEEEEEE
Confidence 345667732222 235689999999999986 4543 3789999875332 3333332 3345555443
No 130
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=29.86 E-value=82 Score=28.48 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=30.2
Q ss_pred eecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 399 ~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
..+.||..+=.--...+.+|+|++|.+++.. .+|. ...+++|+.+=
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v-~~g~---~~~l~pGd~v~ 182 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHL-RNAP---DLMLEPGQTRF 182 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEE-TTSC---CEEECTTCEEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEE-CCCC---EEecCCCCEEE
Confidence 3455665433334556789999999998876 2233 34788988653
No 131
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=29.42 E-value=64 Score=27.36 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=32.0
Q ss_pred CCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 414 PTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 414 ~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
.+.+++|++|++++.. +|+ ...+++||.+=-- .|.+..+.. .++|+++.+
T Consensus 84 ~eE~~yVLeG~~~l~i--~g~---~~~l~~GD~i~iP---~G~~h~~~n--~~~a~~l~V 133 (151)
T 4axo_A 84 YDEIDYVIDGTLDIII--DGR---KVSASSGELIFIP---KGSKIQFSV--PDYARFIYV 133 (151)
T ss_dssp SEEEEEEEEEEEEEEE--TTE---EEEEETTCEEEEC---TTCEEEEEE--EEEEEEEEE
T ss_pred CcEEEEEEEeEEEEEE--CCE---EEEEcCCCEEEEC---CCCEEEEEe--CCCEEEEEE
Confidence 4578899999999985 664 3578999976422 133433333 256666554
No 132
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=28.28 E-value=79 Score=32.25 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=37.9
Q ss_pred hccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 395 EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 395 ~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
.+....+.||..+-..-..++.+++|++|++.+.....+.. ....+++||.+-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEEE
Confidence 44556789998776654445689999999998876333322 456899999875
No 133
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=27.88 E-value=76 Score=24.47 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=34.3
Q ss_pred CeEEEEEEcEEEEEEeeCC-ceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHHH
Q 007363 415 TDLYIVVSGAVDVLIYKNG-AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHH 477 (606)
Q Consensus 415 ~~ly~I~~G~v~v~~~~~g-~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~~ 477 (606)
..+++|++|.+.+.. +| + ...+++||.+=-- .+.+..... .+++.++.++...
T Consensus 49 ~E~~~Vl~G~~~~~~--~~~~---~~~l~~Gd~~~ip---~~~~H~~~~--~~~~~~l~i~~~~ 102 (107)
T 2i45_A 49 DKVLFAVEGDMAVDF--ADGG---SMTIREGEMAVVP---KSVSHRPRS--ENGCSLVLIELSD 102 (107)
T ss_dssp CEEEEESSSCEEEEE--TTSC---EEEECTTEEEEEC---TTCCEEEEE--EEEEEEEEEECC-
T ss_pred CEEEEEEeCEEEEEE--CCCc---EEEECCCCEEEEC---CCCcEeeEe--CCCeEEEEEECCC
Confidence 689999999999876 44 3 3468999876322 244544333 3567777775443
No 134
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=27.57 E-value=1.5e+02 Score=23.47 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=28.4
Q ss_pred ceecCCCceEE--ecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 398 AEYFPPKVEII--LQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 398 ~~~~~~ge~I~--~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
...++||..+- ..-+....+|+|++|.+.+.. +|+ ...+++||.+=
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i--~~~---~~~l~~Gd~i~ 77 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI--DGE---KIELQAGDWLR 77 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE--TTE---EEEEETTEEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 34566776442 222222357779999999876 454 34688888753
No 135
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=27.45 E-value=1e+02 Score=31.94 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=43.8
Q ss_pred HHHHHHHhccceecCCCceEEecC-CCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEe
Q 007363 388 LIAQMVSEMKAEYFPPKVEIILQN-EIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 388 ~l~~l~~~~~~~~~~~ge~I~~~g-~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fG 448 (606)
.+..+-..+....+.||.++-..= -.++.+.+|++|.+.+... .+|.......+++||+|=
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v 450 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFI 450 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 344555566778889998775443 3367899999999998763 345555567899999874
No 136
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=27.40 E-value=1.2e+02 Score=30.40 Aligned_cols=78 Identities=8% Similarity=0.047 Sum_probs=49.5
Q ss_pred cceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEE-cccEEEEEeCH
Q 007363 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRT-KRLSQVIRLSH 475 (606)
Q Consensus 397 ~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a-~~~~~l~~l~~ 475 (606)
....++||+..-..-.....+|+|++|+..+.. +|+ ...+++||+|=.-. +......-.. .+++.++.++-
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge---~~~~~~GD~~~iP~---g~~H~~~N~g~~e~~~ll~i~D 368 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGK---RFDWSEHDIFCVPA---WTWHEHCNTQERDDACLFSFND 368 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTE---EEEECTTCEEEECT---TCCEEEEECCSSCCEEEEEEES
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCE---EEEEeCCCEEEECC---CCeEEeEeCCCCCCeEEEEeeC
Confidence 456778888776555556789999999986654 554 34789999875332 2333222222 35678888865
Q ss_pred HHHHhhh
Q 007363 476 HHLKQMV 482 (606)
Q Consensus 476 ~~f~~ll 482 (606)
.-+.+-+
T Consensus 369 ~Pl~~~L 375 (394)
T 3bu7_A 369 FPVMEKL 375 (394)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5554443
No 137
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=27.11 E-value=59 Score=25.62 Aligned_cols=46 Identities=9% Similarity=0.126 Sum_probs=28.1
Q ss_pred eecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 399 EYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 399 ~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
..+.||...-..-.....+++|++|.+.+.. +++. ...+++|+.+=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~~--~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQE--PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE--TTSC--CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCEE--EEEeCCCCEEE
Confidence 3455555432222234578999999999876 4442 22678888653
No 138
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=26.97 E-value=98 Score=28.38 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=43.5
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe-ccccccCCCcccEEEEcccEEEEEe
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG-EIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG-e~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
+....++||..+-..--....+++|++|.+++.. +|+ ...+.+|+.+= -- .+.+........++|.++.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~---~~~l~~Gd~i~~ip---~~~~H~~~n~~~~~~~~l~i 106 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV---TRKMTALESAYIAP---PHVPHGARNDTDQEVIAIDI 106 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE---EEEEETTTCEEEEC---TTCCEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE---EEEECCCCEEEEcC---CCCcEeeEeCCCCcEEEEEE
Confidence 4445688998776555556789999999999986 554 34788998431 11 13444333333344666655
No 139
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=26.92 E-value=35 Score=28.17 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=9.0
Q ss_pred hhhhhhhhHHHhHHHHHHHh
Q 007363 169 FLNLLRLWRLRRVGELFTRL 188 (606)
Q Consensus 169 ~l~llrllRl~r~~~~~~~l 188 (606)
.+|++|++|++|+.+....+
T Consensus 96 ~lRllRv~Rvlkl~r~~~~l 115 (132)
T 1ors_C 96 LFRLVRLLRFLRILLIISRG 115 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 34444444444444444433
No 140
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=26.86 E-value=1.3e+02 Score=25.21 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=30.0
Q ss_pred ceecCCCce-EE-ecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEE
Q 007363 398 AEYFPPKVE-II-LQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMA 447 (606)
Q Consensus 398 ~~~~~~ge~-I~-~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 447 (606)
...++||.. .- ..-.....+++|++|++.+.. +|+ ...+++||++
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~---~~~l~~Gd~i 96 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END---QYPIAPGDFV 96 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE---EEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE---EEEeCCCCEE
Confidence 355677763 21 111245689999999999876 554 3578999976
No 141
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=26.26 E-value=1.1e+02 Score=26.81 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=29.0
Q ss_pred hhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEE
Q 007363 377 KTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLY 418 (606)
Q Consensus 377 ~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly 418 (606)
++|.|++++..+.+++... .+||.|++....++++-
T Consensus 13 ~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lt 48 (178)
T 2xp1_A 13 KHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCV 48 (178)
T ss_dssp GSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEE
T ss_pred cCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEE
Confidence 5799999999888877666 25999999987777643
No 142
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=25.95 E-value=80 Score=29.82 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=36.5
Q ss_pred HhccceecCCCceEEe-cCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 394 SEMKAEYFPPKVEIIL-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 394 ~~~~~~~~~~ge~I~~-~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
..+....++||..+-. +-......++|++|+..+.. +|+ ...+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~---~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQD---WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTE---EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 4566778899998864 33334578999999998875 554 35789999763
No 143
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=25.45 E-value=98 Score=29.13 Aligned_cols=58 Identities=7% Similarity=0.108 Sum_probs=36.5
Q ss_pred CCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCH
Q 007363 412 EIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSH 475 (606)
Q Consensus 412 ~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~ 475 (606)
+..+.++++++|...+-..++|+- .-..+++|++|=--. |.|. +=++-.+|..+.+.+
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~-~~V~i~eGemfllP~---gv~H--sP~r~~et~gLviE~ 106 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKH-RDVVIRQGEIFLLPA---RVPH--SPQRFANTVGLVVER 106 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEE-EEEEECTTEEEEECT---TCCE--EEEECTTCEEEEEEE
T ss_pred CCCCeEEEEEeCeEEEEEEeCCce-eeEEECCCeEEEeCC---CCCc--CCcccCCeEEEEEee
Confidence 346789999999999887655642 234789998875332 2222 223345666666653
No 144
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=25.11 E-value=79 Score=26.79 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=31.1
Q ss_pred ceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCc----eeEEEEecCCCEEe
Q 007363 398 AEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGA----EQFLTKLGSADMAG 448 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~----~~~~~~l~~G~~fG 448 (606)
...++||..+-..-.....+++|++|++.+.....+. +.....+++|+.+=
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 4456777654222223457999999999998733110 11244789998753
No 145
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=24.96 E-value=1.3e+02 Score=23.00 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=38.1
Q ss_pred ceecCCCceEEecCCCC-CeE-EEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEE
Q 007363 398 AEYFPPKVEIILQNEIP-TDL-YIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIR 472 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~~-~~l-y~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~ 472 (606)
...+.||..+-..-... ..+ ++|++|.+.+.. .+|+ ...+++||.+=-- .+.+. ..++.+++.++.
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~-~~~~---~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~l~ 104 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG-DGDA---VIPAPRGAVLVAP---ISTPH--GVRAVTDMKVLV 104 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC-GGGC---EEEECTTEEEEEE---TTSCE--EEEESSSEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe-CCCE---EEEECCCCEEEeC---CCCcE--EEEEcCCcEEEE
Confidence 34567887665433332 456 799999998875 2133 2468899865322 13333 344555665543
No 146
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=24.77 E-value=99 Score=25.75 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=38.1
Q ss_pred ecCCCCCeEEEEEEcEEEEEEeeC--C-ceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCHH
Q 007363 409 LQNEIPTDLYIVVSGAVDVLIYKN--G-AEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHH 476 (606)
Q Consensus 409 ~~g~~~~~ly~I~~G~v~v~~~~~--g-~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~~ 476 (606)
+.-+..|.+|+|++|++.+...+. + .+.-...+++|+++---. |. .-.-.|.++|.++.+...
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPk---Gv--eH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPA---EC--WFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECT---TC--EEEEEECTTCEEEEEEES
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCC---Cc--cCcccCCCceEEEEEEeC
Confidence 334556889999999999887421 1 111234688887654211 11 123455678888877654
No 147
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=24.49 E-value=1.3e+02 Score=30.86 Aligned_cols=61 Identities=8% Similarity=0.074 Sum_probs=42.8
Q ss_pred HHHHHHHhccceecCCCceEEecC-CCCCeEEEEEEcEEEEEEe-eCCceeEEEEecCCCEEe
Q 007363 388 LIAQMVSEMKAEYFPPKVEIILQN-EIPTDLYIVVSGAVDVLIY-KNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 388 ~l~~l~~~~~~~~~~~ge~I~~~g-~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fG 448 (606)
.+..+-..+....+.||.+....= -.++.+++|++|.+.+..- .+|....-..+.+||.|=
T Consensus 316 ~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v 378 (459)
T 2e9q_A 316 ILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLM 378 (459)
T ss_dssp THHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEE
Confidence 355555667777888988765433 3367899999999998873 345444445799999874
No 148
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=23.44 E-value=77 Score=24.96 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=28.3
Q ss_pred CCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEE
Q 007363 413 IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVR 463 (606)
Q Consensus 413 ~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~ 463 (606)
..+.+++|++|++++.. +|++ ....+++||++---+ +.+......
T Consensus 52 ~~~E~~~Vl~G~~~l~~--~~~~-~~~~l~~Gd~i~ipa---~~~H~~~n~ 96 (112)
T 2opk_A 52 PQDEWVMVVSGSAGIEC--EGDT-APRVMRPGDWLHVPA---HCRHRVAWT 96 (112)
T ss_dssp SSEEEEEEEESCEEEEE--TTCS-SCEEECTTEEEEECT---TCCEEEEEE
T ss_pred CccEEEEEEeCeEEEEE--CCEE-EEEEECCCCEEEECC---CCcEEEEeC
Confidence 44579999999999976 4432 013689998765332 445444333
No 149
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=23.34 E-value=1.3e+02 Score=27.88 Aligned_cols=68 Identities=13% Similarity=-0.035 Sum_probs=41.0
Q ss_pred eecCCCceEEecC--CCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeC
Q 007363 399 EYFPPKVEIILQN--EIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLS 474 (606)
Q Consensus 399 ~~~~~ge~I~~~g--~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~ 474 (606)
..++||...-..- ...+.+.+|++|++++.. +|+ ...+++||++-.- .+.+..+.....+.++++.+.
T Consensus 64 ~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~--~~~---~~~L~~Gd~~~~~---~~~~H~~~N~~~~~~~~l~v~ 133 (261)
T 1rc6_A 64 VTLHQNGGNQQGFGGEGIETFLYVISGNITAKA--EGK---TFALSEGGYLYCP---PGSLMTFVNAQAEDSQIFLYK 133 (261)
T ss_dssp EEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE--TTE---EEEEETTEEEEEC---TTCCCEEEECSSSCEEEEEEE
T ss_pred EEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE--CCE---EEEECCCCEEEEC---CCCCEEEEeCCCCCEEEEEEE
Confidence 4456665432211 123568999999999986 554 3478999986532 245555444444567776653
No 150
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=22.59 E-value=1.1e+02 Score=31.67 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=31.3
Q ss_pred chhhhhhHhHhhhhhhhccccccc--ccCCchhHHHHHHHHHHHH
Q 007363 246 IWLGYTYSIYWSIVTLTTVGYGDL--HAVNTGEKVFNMLYMLFNI 288 (606)
Q Consensus 246 ~~~~Y~~sly~a~~tlttvGyGdi--~p~t~~e~i~~i~~~i~g~ 288 (606)
+.+....|++-+++..||.||... ..-+....++.++.|++|.
T Consensus 303 ~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG 347 (494)
T 3pjz_A 303 PYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGG 347 (494)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcC
Confidence 446778899999999999999854 3334455677777777764
No 151
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=21.85 E-value=1e+02 Score=28.91 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=42.7
Q ss_pred ccceecCCCceEEe-cCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEc-ccEEEEEe
Q 007363 396 MKAEYFPPKVEIIL-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK-RLSQVIRL 473 (606)
Q Consensus 396 ~~~~~~~~ge~I~~-~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~-~~~~l~~l 473 (606)
+....+.||..+-. .-.....+++|++|++.+.. +|+ ...+++||++=-- .+.+..+..... ++++++..
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i--~~~---~~~l~~GD~i~i~---~~~~H~~~n~~~~~~~~~l~~ 255 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL--DNE---WYPVEKGDYIFMS---AYVPQAAYAVGREEPLMYVYS 255 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE--TTE---EEEEETTCEEEEC---TTCCEEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCCEEEEeCCCCCCEEEEEE
Confidence 34456788876533 23345688999999999876 554 3578999976422 244554444433 44555443
No 152
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=21.74 E-value=71 Score=26.89 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=9.1
Q ss_pred hhhhhhhHHHhHHHHHH
Q 007363 170 LNLLRLWRLRRVGELFT 186 (606)
Q Consensus 170 l~llrllRl~r~~~~~~ 186 (606)
++++|++|++|+.|+++
T Consensus 106 lr~lRvlRllRv~Rllr 122 (147)
T 2kyh_A 106 LAGLGLFRLVRLLRFLR 122 (147)
T ss_dssp HHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 153
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=21.64 E-value=1.2e+02 Score=30.88 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=38.5
Q ss_pred HhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 394 SEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 394 ~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
..+....+.||..+-..-...+.+++|++|++.+....++.. ....+++||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSR-DSYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE-EEEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCC-EEEEeCCCCEEE
Confidence 345567889998877664445689999999998876433322 356789999764
No 154
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=21.52 E-value=1e+02 Score=29.09 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=39.9
Q ss_pred ceecCCCceEE-e-cCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 398 AEYFPPKVEII-L-QNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~ge~I~-~-~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
...++||...- . .....+.+++|++|++++.. +|++ ..+++||++=.- .+.+..+.....++++++.+
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v--~g~~---~~L~~GD~i~ip---~~~~H~~~N~g~~~~~~l~v 141 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL--QGQV---HAMQPGGYAFIP---PGADYKVRNTTGQHTRFHWI 141 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE--SSCE---EEECTTEEEEEC---TTCCEEEECCSSSCEEEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE--CCEE---EEECCCCEEEEC---CCCcEEEEECCCCCEEEEEE
Confidence 34456665441 1 11234679999999999986 4542 478999876432 24444443333356666655
No 155
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=21.34 E-value=1.1e+02 Score=30.83 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=37.5
Q ss_pred hccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 395 EMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 395 ~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
.+....+.||..+...-...+.+++|++|++.+.....|.. ....+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDR-DSYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCE-EEEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCC-eEEEecCCCEEE
Confidence 45567788998776664455689999999998876333322 345789999764
No 156
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=20.77 E-value=3e+02 Score=25.88 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=50.8
Q ss_pred ccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEeCH
Q 007363 396 MKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSH 475 (606)
Q Consensus 396 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l~~ 475 (606)
.+...|.+|+.+..+... +.++.+++|+..|.. +|. ...|++||.. +-.....++..+.++|.++.+..
T Consensus 209 teV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~--~~q---~~~L~~~DsL-----LIpa~~~y~~~r~~gsv~L~I~~ 277 (286)
T 2qnk_A 209 TQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM--GGR---RLSLAPDDSL-----LVLAGTSYAWERTQGSVALSVTQ 277 (286)
T ss_dssp EEEEEECSEEEEECCCSS-CEEEEEEESCEEEEE--TTE---EEEECTTEEE-----EECTTCCEEEEECTTCEEEEEEE
T ss_pred eEEEEEcCCccccccCcC-cEEEEEEcCceEEEE--CCe---EEeccCCCEE-----EecCCCeEEEEecCCeEEEEEEE
Confidence 345568999988888777 889999999987765 554 3467887753 33344667888889999988753
No 157
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=20.20 E-value=1.8e+02 Score=23.98 Aligned_cols=71 Identities=10% Similarity=-0.078 Sum_probs=38.0
Q ss_pred ceecCCCceEEecCCC-CCeEEEEEEcEEEEEEeeCCce---eEEEEecCCCEEeccccccCCCcccEEEEcccEEEEEe
Q 007363 398 AEYFPPKVEIILQNEI-PTDLYIVVSGAVDVLIYKNGAE---QFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRL 473 (606)
Q Consensus 398 ~~~~~~ge~I~~~g~~-~~~ly~I~~G~v~v~~~~~g~~---~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~~~~~l~~l 473 (606)
...++||..+-..-.. .+.+++|++|.+.+.. ++.. .....+.+|+.+=-- .+.+..+....-+++.++.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~~~~~~~~~~l~~Gd~i~ip---~g~~H~~~n~~~~~~~~l~i 121 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQM--GHRQDNLHFQEEVFDDYAILIP---AGTWHNVRNTGNRPLKLYSI 121 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEE--ESBTTBCCEEEEEETTCEEEEC---TTCEEEEEECSSSCEEEEEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEE--CCccccceeeEEECCCCEEEEC---CCCcEEEEECCCCCEEEEEE
Confidence 3456777654322222 3479999999999986 2321 011468899864321 23444333322344554444
No 158
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=20.18 E-value=77 Score=31.70 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=33.8
Q ss_pred cceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe
Q 007363 397 KAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG 448 (606)
Q Consensus 397 ~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 448 (606)
....++||+.+-..-.....+|+|++|+-.... .+|++ ..+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~-v~G~~---~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI-VDGHK---VELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE-ETTEE---EEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE-ECCEE---EEEcCCCEEE
Confidence 556788888776554455689999999875433 46653 4689998764
No 159
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=20.11 E-value=44 Score=19.30 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=11.4
Q ss_pred hhhhhhhhHHHhHHHHHHHh
Q 007363 169 FLNLLRLWRLRRVGELFTRL 188 (606)
Q Consensus 169 ~l~llrllRl~r~~~~~~~l 188 (606)
.++.+|.+|.+|-.+.++.+
T Consensus 5 ~l~~lrtlR~LRpLr~isr~ 24 (28)
T 2lcm_A 5 TIKSLRVLRVLRPLKTIKRL 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhcchHHHhhc
Confidence 45556666666666555543
Done!