Query 007365
Match_columns 606
No_of_seqs 500 out of 3278
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 22:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0335 ATP-dependent RNA heli 100.0 8E-85 1.7E-89 666.8 37.1 429 110-538 42-474 (482)
2 KOG0331 ATP-dependent RNA heli 100.0 3.4E-82 7.4E-87 658.7 42.1 389 143-542 92-482 (519)
3 PTZ00110 helicase; Provisional 100.0 2.9E-74 6.3E-79 630.7 53.2 395 133-541 121-517 (545)
4 KOG0339 ATP-dependent RNA heli 100.0 7.1E-75 1.5E-79 581.5 38.0 398 129-541 210-608 (731)
5 KOG0336 ATP-dependent RNA heli 100.0 2.2E-75 4.8E-80 571.6 30.2 389 134-537 211-601 (629)
6 KOG0330 ATP-dependent RNA heli 100.0 5.5E-75 1.2E-79 567.4 30.9 366 140-526 59-425 (476)
7 KOG0333 U5 snRNP-like RNA heli 100.0 2.4E-74 5.2E-79 580.9 35.2 403 126-536 229-653 (673)
8 KOG0341 DEAD-box protein abstr 100.0 2E-73 4.2E-78 554.4 19.0 395 129-537 157-558 (610)
9 COG0513 SrmB Superfamily II DN 100.0 6.4E-70 1.4E-74 590.9 40.9 373 142-533 29-409 (513)
10 KOG0328 Predicted ATP-dependen 100.0 1.7E-70 3.8E-75 514.3 27.9 375 139-534 24-399 (400)
11 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-67 3.7E-72 575.8 43.5 395 129-536 108-503 (518)
12 KOG0338 ATP-dependent RNA heli 100.0 5.8E-69 1.3E-73 539.8 28.0 360 142-519 181-544 (691)
13 PRK10590 ATP-dependent RNA hel 100.0 4.1E-66 8.8E-71 558.3 45.5 367 143-524 2-368 (456)
14 KOG0342 ATP-dependent RNA heli 100.0 5.2E-67 1.1E-71 526.2 30.8 362 141-518 81-447 (543)
15 PRK04537 ATP-dependent RNA hel 100.0 3.7E-64 8E-69 552.7 47.5 370 142-523 9-379 (572)
16 KOG0334 RNA helicase [RNA proc 100.0 8.5E-66 1.9E-70 560.3 33.0 417 130-561 353-775 (997)
17 KOG0340 ATP-dependent RNA heli 100.0 7.6E-66 1.6E-70 497.7 28.5 370 141-528 6-381 (442)
18 PRK04837 ATP-dependent RNA hel 100.0 3.2E-64 6.9E-69 539.9 42.8 375 141-527 7-381 (423)
19 KOG0348 ATP-dependent RNA heli 100.0 1.2E-64 2.7E-69 511.3 31.4 371 140-517 134-563 (708)
20 PRK11634 ATP-dependent RNA hel 100.0 2.2E-63 4.7E-68 549.4 42.2 356 142-518 6-362 (629)
21 KOG0326 ATP-dependent RNA heli 100.0 1.4E-65 3.1E-70 488.6 18.4 370 141-532 84-453 (459)
22 KOG0345 ATP-dependent RNA heli 100.0 2.1E-63 4.5E-68 496.6 33.3 356 143-514 5-370 (567)
23 PRK11776 ATP-dependent RNA hel 100.0 1.3E-62 2.9E-67 533.0 41.4 360 142-523 4-364 (460)
24 KOG0343 RNA Helicase [RNA proc 100.0 1.3E-63 2.7E-68 505.4 29.9 358 141-516 68-431 (758)
25 PRK11192 ATP-dependent RNA hel 100.0 1.6E-60 3.4E-65 513.6 42.3 364 143-523 2-367 (434)
26 PRK01297 ATP-dependent RNA hel 100.0 4.1E-59 8.8E-64 507.1 44.0 382 140-533 85-469 (475)
27 KOG0346 RNA helicase [RNA proc 100.0 5.3E-60 1.2E-64 468.0 29.5 367 142-522 19-424 (569)
28 KOG0347 RNA helicase [RNA proc 100.0 8E-60 1.7E-64 477.9 20.8 376 139-522 178-584 (731)
29 PTZ00424 helicase 45; Provisio 100.0 4.5E-57 9.7E-62 482.8 39.0 369 141-530 27-396 (401)
30 KOG0332 ATP-dependent RNA heli 100.0 4.6E-57 1E-61 439.1 27.0 373 140-536 88-473 (477)
31 KOG0327 Translation initiation 100.0 3.1E-57 6.6E-62 444.8 25.3 371 141-534 25-396 (397)
32 KOG0344 ATP-dependent RNA heli 100.0 1.4E-56 3E-61 461.3 27.7 394 129-537 119-524 (593)
33 KOG0337 ATP-dependent RNA heli 100.0 9.8E-56 2.1E-60 435.9 19.9 360 141-519 20-379 (529)
34 KOG4284 DEAD box protein [Tran 100.0 3.5E-54 7.7E-59 442.9 24.5 356 133-510 16-381 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 5E-52 1.1E-56 467.6 38.0 352 148-521 20-401 (742)
36 KOG0350 DEAD-box ATP-dependent 100.0 1.2E-52 2.6E-57 421.9 27.8 353 153-521 148-553 (620)
37 PLN03137 ATP-dependent DNA hel 100.0 6.5E-49 1.4E-53 439.0 37.0 339 147-518 442-797 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 1.5E-48 3.2E-53 422.8 36.4 328 159-519 6-344 (470)
39 KOG0329 ATP-dependent RNA heli 100.0 1.3E-49 2.9E-54 368.5 14.5 340 136-531 36-379 (387)
40 PRK11057 ATP-dependent DNA hel 100.0 1E-46 2.2E-51 418.9 37.2 330 154-517 14-352 (607)
41 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-46 2.7E-51 415.6 36.3 320 160-507 12-390 (844)
42 PRK13767 ATP-dependent helicas 100.0 8.6E-46 1.9E-50 425.2 37.8 343 149-506 18-396 (876)
43 TIGR01389 recQ ATP-dependent D 100.0 8.1E-46 1.8E-50 412.8 35.0 326 159-518 8-341 (591)
44 PRK02362 ski2-like helicase; P 100.0 2.8E-45 6.1E-50 417.3 32.9 340 143-508 2-397 (737)
45 PRK00254 ski2-like helicase; P 100.0 3E-44 6.5E-49 407.8 34.6 340 143-509 2-389 (720)
46 TIGR00580 mfd transcription-re 100.0 5.9E-43 1.3E-47 397.5 39.6 322 149-509 436-771 (926)
47 PRK10917 ATP-dependent DNA hel 100.0 6.3E-42 1.4E-46 384.4 40.6 330 156-523 254-604 (681)
48 PRK10689 transcription-repair 100.0 6.5E-42 1.4E-46 396.9 39.6 317 153-508 590-919 (1147)
49 PRK01172 ski2-like helicase; P 100.0 2.9E-42 6.2E-47 390.0 33.0 339 143-508 2-378 (674)
50 TIGR00643 recG ATP-dependent D 100.0 3.3E-41 7.2E-46 376.3 39.9 340 151-525 223-583 (630)
51 PRK09751 putative ATP-dependen 100.0 5.6E-42 1.2E-46 398.9 33.4 303 184-495 1-371 (1490)
52 PHA02653 RNA helicase NPH-II; 100.0 4.5E-42 9.7E-47 378.0 30.6 314 167-510 167-516 (675)
53 COG1201 Lhr Lhr-like helicases 100.0 2.3E-41 5E-46 371.9 33.4 343 149-507 8-361 (814)
54 PRK09401 reverse gyrase; Revie 100.0 4.8E-41 1.1E-45 390.5 36.4 301 161-495 78-431 (1176)
55 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9E-41 2E-45 376.1 32.5 309 167-510 5-338 (819)
56 COG0514 RecQ Superfamily II DN 100.0 7.5E-41 1.6E-45 355.6 28.3 331 159-521 12-350 (590)
57 KOG0349 Putative DEAD-box RNA 100.0 1.2E-41 2.5E-46 336.4 19.1 289 218-506 284-613 (725)
58 PRK11664 ATP-dependent RNA hel 100.0 5.5E-40 1.2E-44 370.7 30.2 308 167-509 8-340 (812)
59 PRK14701 reverse gyrase; Provi 100.0 6.1E-40 1.3E-44 388.5 31.6 328 152-511 67-459 (1638)
60 PRK12898 secA preprotein trans 100.0 4.1E-39 8.9E-44 349.0 34.0 323 163-511 102-589 (656)
61 COG1111 MPH1 ERCC4-like helica 100.0 1.8E-38 3.9E-43 322.7 33.7 327 162-511 13-484 (542)
62 PHA02558 uvsW UvsW helicase; P 100.0 2E-38 4.3E-43 345.5 29.8 308 162-505 112-449 (501)
63 TIGR01587 cas3_core CRISPR-ass 100.0 1.9E-38 4.1E-43 333.8 27.8 302 181-510 1-338 (358)
64 TIGR01054 rgy reverse gyrase. 100.0 5.9E-38 1.3E-42 365.3 34.4 296 153-481 67-410 (1171)
65 PRK09200 preprotein translocas 100.0 4.4E-37 9.5E-42 340.0 33.2 322 164-510 78-543 (790)
66 TIGR03714 secA2 accessory Sec 100.0 9E-37 1.9E-41 334.4 32.2 325 164-511 68-540 (762)
67 TIGR00963 secA preprotein tran 100.0 4.3E-36 9.3E-41 327.0 33.4 322 164-511 56-520 (745)
68 PRK13766 Hef nuclease; Provisi 100.0 1.4E-35 3.1E-40 341.5 39.6 327 163-511 14-482 (773)
69 COG1202 Superfamily II helicas 100.0 8.9E-37 1.9E-41 311.8 24.5 345 143-507 195-552 (830)
70 PRK11131 ATP-dependent RNA hel 100.0 5.6E-36 1.2E-40 343.1 28.1 305 166-511 76-414 (1294)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 6.8E-35 1.5E-39 304.3 31.7 296 168-493 1-357 (357)
72 KOG0354 DEAD-box like helicase 100.0 5.4E-35 1.2E-39 314.1 30.5 336 149-507 47-528 (746)
73 COG1204 Superfamily II helicas 100.0 2.9E-35 6.4E-40 328.3 29.2 336 147-506 14-406 (766)
74 TIGR00603 rad25 DNA repair hel 100.0 2.5E-34 5.3E-39 315.3 27.4 308 163-511 254-610 (732)
75 KOG0352 ATP-dependent DNA heli 100.0 1.8E-34 3.8E-39 285.5 23.3 338 154-516 8-370 (641)
76 COG1205 Distinct helicase fami 100.0 6.7E-33 1.4E-37 313.6 33.9 338 149-506 55-420 (851)
77 KOG0351 ATP-dependent DNA heli 100.0 1E-33 2.2E-38 317.8 26.6 337 152-519 252-603 (941)
78 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.8E-33 6E-38 322.3 26.7 305 170-511 73-407 (1283)
79 PRK05580 primosome assembly pr 100.0 7.5E-31 1.6E-35 293.8 35.9 317 163-511 143-552 (679)
80 PRK04914 ATP-dependent helicas 100.0 2.9E-31 6.2E-36 300.9 32.2 320 164-509 152-604 (956)
81 COG1200 RecG RecG-like helicas 100.0 1.4E-30 3E-35 276.3 34.1 337 151-524 249-607 (677)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 5.7E-31 1.2E-35 285.6 27.7 342 159-514 105-497 (1230)
83 KOG0353 ATP-dependent DNA heli 100.0 8.2E-31 1.8E-35 255.8 25.7 345 144-515 73-474 (695)
84 PRK09694 helicase Cas3; Provis 100.0 6.9E-30 1.5E-34 288.0 36.5 313 162-497 284-664 (878)
85 COG1061 SSL2 DNA or RNA helica 100.0 7.2E-31 1.6E-35 280.7 24.7 303 163-500 35-382 (442)
86 cd00268 DEADc DEAD-box helicas 100.0 6.3E-30 1.4E-34 247.1 25.1 202 144-357 1-202 (203)
87 PRK13104 secA preprotein trans 100.0 2.1E-29 4.6E-34 278.2 31.0 324 164-511 82-590 (896)
88 PRK12899 secA preprotein trans 100.0 1.1E-28 2.4E-33 271.9 32.7 149 145-308 65-229 (970)
89 PRK12904 preprotein translocas 100.0 2E-28 4.3E-33 270.5 31.1 321 164-510 81-575 (830)
90 TIGR00595 priA primosomal prot 100.0 2.9E-28 6.3E-33 263.8 31.7 289 183-506 1-379 (505)
91 PRK12906 secA preprotein trans 100.0 2.4E-28 5.1E-33 268.8 29.3 322 163-510 79-555 (796)
92 KOG0920 ATP-dependent RNA heli 100.0 4.8E-28 1E-32 267.6 25.2 336 164-527 173-566 (924)
93 PRK11448 hsdR type I restricti 100.0 1.5E-27 3.3E-32 276.4 28.3 310 163-496 412-801 (1123)
94 COG1197 Mfd Transcription-repa 100.0 6.5E-27 1.4E-31 261.3 31.6 308 164-509 594-914 (1139)
95 KOG0947 Cytoplasmic exosomal R 100.0 3.7E-27 8E-32 253.3 26.5 311 164-508 297-723 (1248)
96 COG1643 HrpA HrpA-like helicas 100.0 3.5E-27 7.5E-32 262.2 25.5 331 165-527 51-408 (845)
97 PLN03142 Probable chromatin-re 100.0 1.5E-26 3.3E-31 263.3 30.5 317 164-507 169-598 (1033)
98 PRK13107 preprotein translocas 100.0 2.8E-26 6.1E-31 252.7 29.0 321 164-510 82-593 (908)
99 COG4098 comFA Superfamily II D 99.9 2.4E-25 5.1E-30 216.1 30.0 303 164-508 97-416 (441)
100 KOG0948 Nuclear exosomal RNA h 99.9 4.9E-27 1.1E-31 246.7 19.2 314 164-508 129-539 (1041)
101 KOG0951 RNA helicase BRR2, DEA 99.9 6.6E-26 1.4E-30 249.1 26.7 339 148-498 295-690 (1674)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 5.8E-26 1.3E-30 212.5 19.0 167 166-345 1-168 (169)
103 COG4581 Superfamily II RNA hel 99.9 2.6E-25 5.6E-30 248.6 26.6 322 158-506 114-535 (1041)
104 KOG0922 DEAH-box RNA helicase 99.9 5.3E-25 1.1E-29 231.6 25.3 312 165-510 52-392 (674)
105 KOG0950 DNA polymerase theta/e 99.9 3.3E-25 7.2E-30 240.3 19.8 344 149-516 208-619 (1008)
106 KOG0385 Chromatin remodeling c 99.9 6.8E-23 1.5E-27 216.7 27.9 319 164-509 167-600 (971)
107 KOG0923 mRNA splicing factor A 99.9 7.5E-24 1.6E-28 220.4 19.9 316 160-506 261-604 (902)
108 COG1203 CRISPR-associated heli 99.9 3E-23 6.6E-28 234.8 23.3 327 165-511 196-553 (733)
109 KOG0924 mRNA splicing factor A 99.9 1.5E-23 3.2E-28 218.5 18.7 311 164-507 356-696 (1042)
110 TIGR00631 uvrb excinuclease AB 99.9 5.6E-22 1.2E-26 219.8 31.8 136 378-519 424-564 (655)
111 PRK12900 secA preprotein trans 99.9 2.2E-22 4.7E-27 222.9 22.9 141 377-524 579-731 (1025)
112 KOG0926 DEAH-box RNA helicase 99.9 8E-23 1.7E-27 216.4 16.4 316 169-507 261-703 (1172)
113 COG4096 HsdR Type I site-speci 99.9 8.5E-22 1.8E-26 212.1 20.8 301 163-495 164-525 (875)
114 COG1110 Reverse gyrase [DNA re 99.9 1.4E-20 2.9E-25 205.6 29.5 287 158-479 76-416 (1187)
115 COG0556 UvrB Helicase subunit 99.9 1.3E-20 2.8E-25 193.0 27.4 166 330-508 387-557 (663)
116 PRK05298 excinuclease ABC subu 99.9 1.8E-20 3.9E-25 209.5 30.2 149 379-533 429-591 (652)
117 TIGR01407 dinG_rel DnaQ family 99.9 1.9E-20 4.1E-25 216.4 30.6 350 149-521 231-829 (850)
118 TIGR00348 hsdR type I site-spe 99.9 1.5E-20 3.3E-25 210.8 27.6 303 165-495 239-634 (667)
119 KOG0387 Transcription-coupled 99.9 1.2E-20 2.5E-25 200.9 23.0 318 164-508 205-658 (923)
120 PRK12326 preprotein translocas 99.9 1.4E-19 2.9E-24 195.8 29.9 320 164-510 78-549 (764)
121 KOG0925 mRNA splicing factor A 99.9 1.5E-20 3.3E-25 189.8 20.6 331 141-508 24-387 (699)
122 KOG1123 RNA polymerase II tran 99.9 3.9E-21 8.5E-26 194.5 16.1 294 163-496 301-635 (776)
123 KOG0384 Chromodomain-helicase 99.8 1.3E-20 2.9E-25 208.4 17.1 319 163-509 369-812 (1373)
124 smart00487 DEXDc DEAD-like hel 99.8 9.9E-20 2.1E-24 174.0 21.2 186 160-360 4-191 (201)
125 KOG0949 Predicted helicase, DE 99.8 1.9E-19 4.1E-24 194.7 22.6 157 164-339 511-671 (1330)
126 PRK13103 secA preprotein trans 99.8 1.2E-18 2.7E-23 192.8 26.9 322 164-510 82-593 (913)
127 KOG0390 DNA repair protein, SN 99.8 5.9E-18 1.3E-22 185.1 31.3 321 164-507 238-706 (776)
128 COG1198 PriA Primosomal protei 99.8 2.4E-18 5.3E-23 189.3 27.2 317 164-515 198-610 (730)
129 KOG0389 SNF2 family DNA-depend 99.8 4.3E-18 9.4E-23 181.3 24.1 319 165-509 400-889 (941)
130 PRK12903 secA preprotein trans 99.8 3.7E-17 8E-22 179.3 30.2 320 164-510 78-541 (925)
131 KOG0392 SNF2 family DNA-depend 99.8 2.1E-18 4.5E-23 190.4 20.4 327 165-508 976-1454(1549)
132 PRK07246 bifunctional ATP-depe 99.8 4.3E-17 9.2E-22 186.2 31.5 329 164-521 245-798 (820)
133 CHL00122 secA preprotein trans 99.8 6.4E-17 1.4E-21 178.6 26.1 278 164-467 76-490 (870)
134 COG4889 Predicted helicase [Ge 99.8 7.1E-18 1.5E-22 180.4 16.2 357 152-525 149-618 (1518)
135 cd00079 HELICc Helicase superf 99.7 1.3E-17 2.9E-22 148.6 13.4 120 380-504 12-131 (131)
136 KOG4150 Predicted ATP-dependen 99.7 3.3E-17 7.2E-22 168.3 17.6 338 151-506 273-638 (1034)
137 PF00271 Helicase_C: Helicase 99.7 1.4E-17 3E-22 134.5 8.8 78 419-496 1-78 (78)
138 KOG1000 Chromatin remodeling p 99.7 1.6E-15 3.4E-20 154.2 25.2 315 163-505 197-598 (689)
139 PRK12902 secA preprotein trans 99.7 3.5E-15 7.6E-20 164.6 29.2 279 164-468 85-506 (939)
140 TIGR03117 cas_csf4 CRISPR-asso 99.7 9.3E-15 2E-19 160.1 32.4 118 401-520 470-629 (636)
141 KOG0386 Chromatin remodeling c 99.7 1.7E-16 3.8E-21 173.0 16.3 316 164-505 394-833 (1157)
142 PRK08074 bifunctional ATP-depe 99.7 8.3E-15 1.8E-19 170.4 30.0 133 384-520 739-907 (928)
143 KOG1002 Nucleotide excision re 99.7 1.8E-15 3.9E-20 153.5 20.4 128 379-509 619-750 (791)
144 cd00046 DEXDc DEAD-like helica 99.7 9E-16 2E-20 137.8 16.2 144 180-339 1-144 (144)
145 KOG0921 Dosage compensation co 99.7 4.2E-16 9.1E-21 167.6 12.6 322 165-507 379-773 (1282)
146 PF06862 DUF1253: Protein of u 99.6 8.2E-14 1.8E-18 145.4 26.8 295 219-517 36-424 (442)
147 KOG0388 SNF2 family DNA-depend 99.6 1.4E-14 3.1E-19 152.4 20.3 126 378-508 1026-1154(1185)
148 PF04851 ResIII: Type III rest 99.6 2.4E-15 5.2E-20 142.3 12.6 151 164-340 3-183 (184)
149 KOG0391 SNF2 family DNA-depend 99.6 7.1E-14 1.5E-18 153.6 23.1 108 401-508 1276-1387(1958)
150 COG1199 DinG Rad3-related DNA 99.6 3.9E-13 8.4E-18 152.7 27.6 134 383-523 465-634 (654)
151 KOG0953 Mitochondrial RNA heli 99.6 2.4E-14 5.2E-19 147.8 15.3 270 180-507 192-476 (700)
152 smart00490 HELICc helicase sup 99.6 6.8E-15 1.5E-19 119.5 8.6 81 416-496 2-82 (82)
153 PRK12901 secA preprotein trans 99.6 1.8E-13 3.9E-18 152.7 22.2 130 374-510 606-743 (1112)
154 KOG4439 RNA polymerase II tran 99.6 1.6E-13 3.6E-18 144.9 18.5 121 379-503 728-851 (901)
155 TIGR00604 rad3 DNA repair heli 99.5 3.4E-12 7.4E-17 145.3 30.7 142 383-537 508-694 (705)
156 KOG0951 RNA helicase BRR2, DEA 99.5 1E-13 2.2E-18 154.2 17.2 316 164-516 1143-1502(1674)
157 PRK11747 dinG ATP-dependent DN 99.5 5.6E-12 1.2E-16 142.5 31.4 117 383-507 521-673 (697)
158 TIGR02562 cas3_yersinia CRISPR 99.5 5.7E-13 1.2E-17 149.4 22.7 91 404-497 759-881 (1110)
159 KOG2340 Uncharacterized conser 99.5 6.9E-13 1.5E-17 136.3 18.9 353 161-517 213-677 (698)
160 COG0553 HepA Superfamily II DN 99.5 3.6E-12 7.8E-17 150.0 23.5 120 380-504 692-816 (866)
161 PRK14873 primosome assembly pr 99.4 2.7E-11 5.9E-16 134.7 24.0 277 187-508 168-539 (665)
162 KOG1015 Transcription regulato 99.4 2.4E-11 5.3E-16 131.9 20.8 121 379-504 1125-1271(1567)
163 PF02399 Herpes_ori_bp: Origin 99.4 3.1E-11 6.8E-16 132.5 20.5 293 180-507 50-387 (824)
164 PF00176 SNF2_N: SNF2 family N 99.3 3.2E-11 6.9E-16 123.5 14.5 156 168-339 1-172 (299)
165 COG0610 Type I site-specific r 99.2 1.6E-09 3.5E-14 125.9 26.0 286 180-495 274-636 (962)
166 COG0653 SecA Preprotein transl 99.2 5.5E-10 1.2E-14 123.6 19.1 321 165-509 79-546 (822)
167 PF07652 Flavi_DEAD: Flaviviru 99.2 8.3E-11 1.8E-15 103.3 9.6 137 179-343 4-140 (148)
168 smart00489 DEXDc3 DEAD-like he 99.1 1.3E-09 2.8E-14 110.5 14.4 73 164-243 8-84 (289)
169 smart00488 DEXDc2 DEAD-like he 99.1 1.3E-09 2.8E-14 110.5 14.4 73 164-243 8-84 (289)
170 PRK15483 type III restriction- 99.0 1.3E-07 2.9E-12 107.2 26.9 73 451-523 501-583 (986)
171 PF07517 SecA_DEAD: SecA DEAD- 98.9 2.4E-08 5.2E-13 98.7 14.9 129 162-307 75-210 (266)
172 TIGR00596 rad1 DNA repair prot 98.8 1.3E-07 2.8E-12 107.4 18.5 65 270-338 7-71 (814)
173 COG3587 Restriction endonuclea 98.6 2.3E-06 5.1E-11 93.8 20.5 71 451-521 483-566 (985)
174 KOG1001 Helicase-like transcri 98.6 2E-07 4.4E-12 103.5 12.4 102 402-503 540-643 (674)
175 KOG1016 Predicted DNA helicase 98.6 1.6E-06 3.5E-11 93.4 16.2 105 401-505 719-844 (1387)
176 KOG1802 RNA helicase nonsense 98.3 1.3E-05 2.9E-10 85.6 15.6 85 155-255 401-485 (935)
177 KOG0952 DNA/RNA helicase MER3/ 98.3 2E-07 4.3E-12 103.9 1.6 145 164-323 927-1074(1230)
178 PF13086 AAA_11: AAA domain; P 98.3 4.2E-06 9.1E-11 82.1 10.2 74 164-242 1-75 (236)
179 PF13872 AAA_34: P-loop contai 98.3 7.4E-06 1.6E-10 81.4 11.4 180 137-345 17-226 (303)
180 PF02562 PhoH: PhoH-like prote 98.2 4.7E-06 1E-10 79.2 8.8 59 163-232 3-61 (205)
181 PF13604 AAA_30: AAA domain; P 98.2 6.5E-06 1.4E-10 78.7 9.8 124 164-338 1-130 (196)
182 PF13307 Helicase_C_2: Helicas 98.2 4.2E-06 9E-11 77.9 7.7 105 401-507 9-149 (167)
183 PF12340 DUF3638: Protein of u 98.2 4.2E-05 9.2E-10 73.4 13.9 152 143-309 4-187 (229)
184 KOG1132 Helicase of the DEAD s 98.0 4.1E-05 8.8E-10 84.8 10.9 142 164-308 21-261 (945)
185 TIGR01447 recD exodeoxyribonuc 97.9 0.00014 3.1E-09 80.6 13.7 142 166-337 147-294 (586)
186 PRK10875 recD exonuclease V su 97.9 0.00012 2.6E-09 81.4 12.6 143 165-338 153-301 (615)
187 PRK10536 hypothetical protein; 97.8 0.00035 7.5E-09 68.5 13.6 60 161-231 56-115 (262)
188 PF09848 DUF2075: Uncharacteri 97.8 8E-05 1.7E-09 78.1 9.8 108 181-321 3-117 (352)
189 TIGR01448 recD_rel helicase, p 97.8 0.00029 6.2E-09 80.5 13.5 65 163-238 322-386 (720)
190 TIGR00376 DNA helicase, putati 97.7 0.00025 5.5E-09 79.7 12.8 68 163-243 156-224 (637)
191 PRK13889 conjugal transfer rel 97.7 0.0015 3.3E-08 76.2 19.2 124 164-338 346-470 (988)
192 COG3421 Uncharacterized protei 97.7 0.00021 4.6E-09 75.9 10.0 161 184-359 2-183 (812)
193 KOG1803 DNA helicase [Replicat 97.6 0.0002 4.3E-09 76.5 9.4 65 164-241 185-250 (649)
194 PF13245 AAA_19: Part of AAA d 97.6 0.00026 5.7E-09 56.2 7.5 60 172-240 2-62 (76)
195 PRK13826 Dtr system oriT relax 97.4 0.011 2.3E-07 69.8 20.5 125 163-338 380-505 (1102)
196 PRK12723 flagellar biosynthesi 97.4 0.0053 1.2E-07 64.6 15.5 133 180-350 175-309 (388)
197 PF13401 AAA_22: AAA domain; P 97.3 0.0024 5.2E-08 56.4 10.7 18 178-195 3-20 (131)
198 PF14617 CMS1: U3-containing 9 97.3 0.00094 2E-08 65.5 8.0 87 218-305 124-212 (252)
199 PRK14722 flhF flagellar biosyn 97.2 0.0042 9E-08 64.9 13.1 133 179-351 137-270 (374)
200 PF05970 PIF1: PIF1-like helic 97.2 0.0011 2.3E-08 69.9 9.0 60 164-236 1-66 (364)
201 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0028 6.1E-08 72.8 13.0 123 163-336 351-474 (744)
202 TIGR02760 TraI_TIGR conjugativ 97.2 0.025 5.4E-07 71.4 21.8 239 164-451 429-686 (1960)
203 KOG1805 DNA replication helica 97.2 0.0016 3.4E-08 73.3 10.0 136 148-308 657-810 (1100)
204 PF00580 UvrD-helicase: UvrD/R 97.2 0.002 4.4E-08 66.1 10.6 123 165-304 1-125 (315)
205 COG1875 NYN ribonuclease and A 97.2 0.0043 9.2E-08 62.9 11.7 135 159-322 223-375 (436)
206 smart00492 HELICc3 helicase su 97.1 0.0041 8.9E-08 55.9 9.9 77 430-506 26-136 (141)
207 PRK14974 cell division protein 97.1 0.0095 2.1E-07 61.5 13.4 56 293-352 221-277 (336)
208 PRK08181 transposase; Validate 97.0 0.0068 1.5E-07 60.6 11.8 30 166-195 89-122 (269)
209 smart00491 HELICc2 helicase su 97.0 0.004 8.6E-08 56.1 8.8 69 438-506 31-137 (142)
210 PRK06526 transposase; Provisio 97.0 0.0032 6.9E-08 62.6 8.7 24 174-197 93-116 (254)
211 PRK05703 flhF flagellar biosyn 97.0 0.059 1.3E-06 57.8 18.9 132 179-350 221-354 (424)
212 PF00448 SRP54: SRP54-type pro 96.9 0.0079 1.7E-07 57.4 10.9 134 181-351 3-137 (196)
213 cd00009 AAA The AAA+ (ATPases 96.9 0.012 2.7E-07 52.3 11.6 17 179-195 19-35 (151)
214 PRK04296 thymidine kinase; Pro 96.9 0.0022 4.8E-08 60.9 6.6 40 276-322 63-102 (190)
215 PRK06893 DNA replication initi 96.8 0.0045 9.7E-08 60.7 8.5 47 292-341 89-136 (229)
216 KOG1131 RNA polymerase II tran 96.8 0.011 2.3E-07 62.3 11.1 45 162-206 14-62 (755)
217 PRK08116 hypothetical protein; 96.8 0.044 9.5E-07 55.1 15.4 50 292-344 176-226 (268)
218 COG1419 FlhF Flagellar GTP-bin 96.8 0.11 2.4E-06 54.2 18.3 133 178-350 202-335 (407)
219 PRK05642 DNA replication initi 96.7 0.0066 1.4E-07 59.8 8.8 46 292-341 95-142 (234)
220 KOG0383 Predicted helicase [Ge 96.7 0.00014 3E-09 80.4 -4.0 80 379-464 614-696 (696)
221 KOG0298 DEAD box-containing he 96.6 0.0053 1.1E-07 71.0 7.8 156 179-343 374-554 (1394)
222 KOG0701 dsRNA-specific nucleas 96.5 0.0032 7E-08 75.5 6.1 93 403-495 294-398 (1606)
223 PRK06921 hypothetical protein; 96.5 0.034 7.4E-07 55.7 12.5 28 178-206 116-143 (266)
224 PRK07952 DNA replication prote 96.5 0.047 1E-06 53.9 13.1 50 292-344 160-210 (244)
225 PRK06835 DNA replication prote 96.5 0.027 5.8E-07 58.2 11.8 50 292-344 244-294 (329)
226 PRK07764 DNA polymerase III su 96.5 0.0087 1.9E-07 69.0 8.9 21 180-200 38-58 (824)
227 PRK08084 DNA replication initi 96.5 0.011 2.5E-07 58.1 8.7 46 295-342 98-144 (235)
228 PRK08727 hypothetical protein; 96.5 0.014 3.1E-07 57.3 9.3 50 292-344 91-141 (233)
229 smart00382 AAA ATPases associa 96.5 0.0076 1.6E-07 53.1 6.7 17 179-195 2-18 (148)
230 cd01120 RecA-like_NTPases RecA 96.4 0.019 4.1E-07 52.4 9.2 18 292-309 83-100 (165)
231 PRK11331 5-methylcytosine-spec 96.3 0.033 7.2E-07 59.2 11.5 33 165-197 180-212 (459)
232 PRK14086 dnaA chromosomal repl 96.3 0.017 3.7E-07 63.8 9.5 51 292-345 375-426 (617)
233 PRK11773 uvrD DNA-dependent he 96.2 0.023 5E-07 65.5 10.5 70 164-244 9-78 (721)
234 PF13871 Helicase_C_4: Helicas 96.2 0.016 3.5E-07 57.7 7.9 65 442-506 52-125 (278)
235 PRK05707 DNA polymerase III su 96.2 0.035 7.5E-07 57.4 10.7 35 164-198 3-41 (328)
236 PRK11889 flhF flagellar biosyn 96.2 0.081 1.8E-06 55.3 12.9 131 180-351 242-375 (436)
237 PRK14087 dnaA chromosomal repl 96.2 0.03 6.5E-07 60.6 10.3 50 292-344 204-254 (450)
238 PF05127 Helicase_RecD: Helica 96.1 0.002 4.2E-08 59.9 1.0 124 183-340 1-124 (177)
239 PHA02533 17 large terminase pr 96.1 0.029 6.2E-07 61.8 10.1 135 164-322 59-195 (534)
240 TIGR01075 uvrD DNA helicase II 96.1 0.018 3.9E-07 66.4 8.9 71 163-244 3-73 (715)
241 PF00308 Bac_DnaA: Bacterial d 96.1 0.0099 2.2E-07 57.8 5.6 50 292-344 95-145 (219)
242 PRK00149 dnaA chromosomal repl 96.1 0.028 6E-07 61.1 9.7 52 292-346 209-261 (450)
243 PRK14721 flhF flagellar biosyn 96.1 0.12 2.6E-06 54.9 14.1 162 178-392 190-352 (420)
244 PRK12727 flagellar biosynthesi 96.0 0.6 1.3E-05 50.9 19.1 19 178-196 349-367 (559)
245 KOG1133 Helicase of the DEAD s 96.0 0.18 3.9E-06 55.3 14.9 123 401-536 629-798 (821)
246 PRK11054 helD DNA helicase IV; 96.0 0.027 5.9E-07 64.0 9.3 72 162-244 194-265 (684)
247 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.037 8E-07 54.0 9.1 18 179-196 38-55 (226)
248 KOG0989 Replication factor C, 95.9 0.028 6E-07 55.9 7.9 56 290-350 125-183 (346)
249 PF13173 AAA_14: AAA domain 95.9 0.1 2.2E-06 46.0 10.7 26 294-321 61-86 (128)
250 PRK12422 chromosomal replicati 95.9 0.046 9.9E-07 59.0 10.0 56 292-350 200-256 (445)
251 PRK12377 putative replication 95.9 0.14 3.1E-06 50.6 12.7 26 179-205 101-126 (248)
252 PRK14723 flhF flagellar biosyn 95.9 0.16 3.5E-06 57.7 14.6 132 179-350 185-317 (767)
253 TIGR02881 spore_V_K stage V sp 95.8 0.062 1.3E-06 53.8 10.3 18 180-197 43-60 (261)
254 cd01124 KaiC KaiC is a circadi 95.8 0.057 1.2E-06 50.8 9.5 48 182-243 2-49 (187)
255 PRK07003 DNA polymerase III su 95.8 0.067 1.5E-06 60.2 11.2 43 293-341 118-160 (830)
256 COG4371 Predicted membrane pro 95.8 0.013 2.7E-07 55.7 4.7 15 551-565 51-65 (334)
257 COG1444 Predicted P-loop ATPas 95.8 0.061 1.3E-06 60.5 10.9 141 164-340 214-357 (758)
258 TIGR00362 DnaA chromosomal rep 95.8 0.031 6.7E-07 59.9 8.4 49 294-345 199-248 (405)
259 PF05621 TniB: Bacterial TniB 95.8 0.09 1.9E-06 52.9 11.0 57 180-242 62-118 (302)
260 PRK06731 flhF flagellar biosyn 95.8 0.19 4.1E-06 50.4 13.3 133 178-351 74-209 (270)
261 PRK00411 cdc6 cell division co 95.7 0.066 1.4E-06 57.1 10.8 24 180-204 56-79 (394)
262 PRK14088 dnaA chromosomal repl 95.7 0.11 2.3E-06 56.2 12.3 52 294-348 194-246 (440)
263 PRK14964 DNA polymerase III su 95.7 0.075 1.6E-06 57.7 10.9 20 180-199 36-55 (491)
264 PRK14712 conjugal transfer nic 95.7 0.084 1.8E-06 64.5 12.2 66 163-237 834-901 (1623)
265 KOG0738 AAA+-type ATPase [Post 95.7 0.077 1.7E-06 54.5 9.9 66 294-359 304-381 (491)
266 PRK12323 DNA polymerase III su 95.6 0.078 1.7E-06 58.8 10.8 40 292-336 122-161 (700)
267 PRK14956 DNA polymerase III su 95.6 0.045 9.7E-07 58.9 8.7 18 181-198 42-59 (484)
268 PF00004 AAA: ATPase family as 95.6 0.028 6.1E-07 49.4 6.2 16 295-310 59-74 (132)
269 PRK08691 DNA polymerase III su 95.6 0.063 1.4E-06 60.2 9.8 19 180-198 39-57 (709)
270 TIGR02785 addA_Gpos recombinat 95.6 0.06 1.3E-06 65.7 10.6 124 164-305 1-126 (1232)
271 PRK06995 flhF flagellar biosyn 95.5 0.061 1.3E-06 58.1 9.5 20 179-198 256-275 (484)
272 PRK00771 signal recognition pa 95.5 0.15 3.3E-06 54.7 12.2 53 295-351 176-229 (437)
273 PF03354 Terminase_1: Phage Te 95.4 0.033 7.1E-07 61.0 7.2 71 167-246 1-80 (477)
274 TIGR01547 phage_term_2 phage t 95.4 0.047 1E-06 58.3 8.0 148 181-352 3-153 (396)
275 PRK05580 primosome assembly pr 95.4 0.13 2.7E-06 58.9 11.9 96 376-477 170-266 (679)
276 PRK12726 flagellar biosynthesi 95.4 0.19 4E-06 52.5 11.9 20 179-198 206-225 (407)
277 PRK13709 conjugal transfer nic 95.4 0.16 3.5E-06 62.9 13.4 65 163-236 966-1032(1747)
278 TIGR01074 rep ATP-dependent DN 95.3 0.071 1.5E-06 61.1 9.6 69 165-244 2-70 (664)
279 PRK14958 DNA polymerase III su 95.3 0.09 2E-06 57.7 10.0 18 181-198 40-57 (509)
280 TIGR00595 priA primosomal prot 95.3 0.12 2.6E-06 56.9 10.9 94 377-476 6-100 (505)
281 PRK08769 DNA polymerase III su 95.3 0.12 2.5E-06 53.2 10.1 37 162-198 2-45 (319)
282 PRK14960 DNA polymerase III su 95.3 0.11 2.4E-06 57.8 10.5 19 180-198 38-56 (702)
283 cd01122 GP4d_helicase GP4d_hel 95.3 0.048 1.1E-06 54.8 7.3 26 176-201 27-52 (271)
284 PRK14959 DNA polymerase III su 95.2 0.096 2.1E-06 58.3 9.6 46 292-343 117-162 (624)
285 KOG0921 Dosage compensation co 95.2 0.039 8.5E-07 61.8 6.4 48 162-209 404-451 (1282)
286 PRK08903 DnaA regulatory inact 95.1 0.14 3E-06 50.1 9.8 44 294-341 90-133 (227)
287 PRK10917 ATP-dependent DNA hel 95.1 0.11 2.3E-06 59.6 10.2 74 401-474 310-388 (681)
288 PRK09111 DNA polymerase III su 95.0 0.098 2.1E-06 58.5 9.2 20 180-199 47-66 (598)
289 PHA02544 44 clamp loader, smal 95.0 0.2 4.3E-06 51.6 11.0 40 294-338 100-139 (316)
290 COG1484 DnaC DNA replication p 95.0 0.043 9.3E-07 54.6 5.7 51 177-241 103-153 (254)
291 PRK06871 DNA polymerase III su 95.0 0.24 5.2E-06 51.0 11.3 35 165-199 3-44 (325)
292 COG1474 CDC6 Cdc6-related prot 94.9 0.51 1.1E-05 49.5 13.9 32 173-205 34-67 (366)
293 PRK14961 DNA polymerase III su 94.9 0.093 2E-06 55.3 8.4 17 181-197 40-56 (363)
294 PRK07994 DNA polymerase III su 94.9 0.12 2.7E-06 57.8 9.6 18 182-199 41-58 (647)
295 PRK14949 DNA polymerase III su 94.9 0.099 2.2E-06 60.0 8.9 17 182-198 41-57 (944)
296 PF05876 Terminase_GpA: Phage 94.9 0.023 5E-07 63.1 3.9 68 164-243 16-86 (557)
297 PRK11634 ATP-dependent RNA hel 94.9 9 0.00019 43.5 28.4 71 222-302 247-321 (629)
298 PRK14952 DNA polymerase III su 94.8 0.12 2.7E-06 57.4 9.5 40 292-336 116-155 (584)
299 TIGR00064 ftsY signal recognit 94.8 0.3 6.5E-06 49.1 11.3 59 293-351 153-214 (272)
300 PRK12402 replication factor C 94.8 0.25 5.4E-06 51.3 11.2 16 181-196 38-53 (337)
301 PRK09183 transposase/IS protei 94.8 0.18 3.9E-06 50.4 9.6 22 176-197 99-120 (259)
302 PTZ00112 origin recognition co 94.7 0.41 8.9E-06 54.8 13.0 28 293-321 868-895 (1164)
303 TIGR02928 orc1/cdc6 family rep 94.7 0.25 5.4E-06 52.0 11.2 24 180-204 41-64 (365)
304 PRK10919 ATP-dependent DNA hel 94.7 0.074 1.6E-06 60.7 7.6 70 164-244 2-71 (672)
305 PRK14969 DNA polymerase III su 94.7 0.21 4.5E-06 55.2 10.8 40 292-336 117-156 (527)
306 PRK14954 DNA polymerase III su 94.7 0.3 6.4E-06 54.8 12.0 40 292-336 125-164 (620)
307 PRK13342 recombination factor 94.6 0.31 6.7E-06 52.3 11.7 17 180-196 37-53 (413)
308 PHA03368 DNA packaging termina 94.6 0.19 4.1E-06 55.6 9.9 135 177-339 252-390 (738)
309 PRK14950 DNA polymerase III su 94.6 0.19 4.1E-06 56.4 10.4 41 292-338 118-158 (585)
310 TIGR02760 TraI_TIGR conjugativ 94.6 0.21 4.6E-06 63.3 11.7 62 163-236 1018-1084(1960)
311 PF06745 KaiC: KaiC; InterPro 94.6 0.11 2.3E-06 50.8 7.4 51 179-243 19-70 (226)
312 PHA00729 NTP-binding motif con 94.6 0.64 1.4E-05 45.0 12.5 75 271-349 59-138 (226)
313 PF05496 RuvB_N: Holliday junc 94.5 0.1 2.2E-06 50.2 6.9 16 180-195 51-66 (233)
314 PRK14957 DNA polymerase III su 94.5 0.32 7E-06 53.7 11.6 18 181-198 40-57 (546)
315 PRK14873 primosome assembly pr 94.5 0.26 5.7E-06 55.8 11.2 94 378-477 170-265 (665)
316 PTZ00293 thymidine kinase; Pro 94.5 0.21 4.6E-06 47.8 9.0 20 179-198 4-23 (211)
317 PRK13833 conjugal transfer pro 94.5 0.1 2.3E-06 53.6 7.3 58 165-233 129-187 (323)
318 PRK07993 DNA polymerase III su 94.5 0.28 6.2E-06 50.8 10.6 35 165-199 3-44 (334)
319 CHL00181 cbbX CbbX; Provisiona 94.5 0.34 7.3E-06 49.2 11.0 19 179-197 59-77 (287)
320 KOG0741 AAA+-type ATPase [Post 94.5 0.65 1.4E-05 49.8 13.0 141 147-342 494-652 (744)
321 KOG0739 AAA+-type ATPase [Post 94.5 0.52 1.1E-05 46.9 11.5 130 174-359 156-298 (439)
322 COG3973 Superfamily I DNA and 94.4 0.27 5.9E-06 53.3 10.3 87 151-244 192-284 (747)
323 COG0593 DnaA ATPase involved i 94.4 0.17 3.6E-06 53.4 8.6 51 294-347 175-226 (408)
324 KOG0991 Replication factor C, 94.4 0.18 3.9E-06 48.3 8.0 36 286-322 103-140 (333)
325 COG4962 CpaF Flp pilus assembl 94.3 0.081 1.8E-06 53.8 5.9 62 160-235 153-215 (355)
326 PRK06645 DNA polymerase III su 94.3 0.26 5.7E-06 53.9 10.3 19 180-198 44-62 (507)
327 COG3972 Superfamily I DNA and 94.3 0.24 5.1E-06 52.5 9.4 134 162-307 160-308 (660)
328 PTZ00146 fibrillarin; Provisio 94.3 4.7 0.0001 40.7 18.4 38 162-199 107-152 (293)
329 PHA03333 putative ATPase subun 94.3 0.68 1.5E-05 51.6 13.3 69 165-245 170-241 (752)
330 PRK13894 conjugal transfer ATP 94.2 0.12 2.6E-06 53.1 7.2 65 155-232 125-190 (319)
331 COG2805 PilT Tfp pilus assembl 94.2 0.076 1.7E-06 52.8 5.3 54 136-208 100-153 (353)
332 TIGR00643 recG ATP-dependent D 94.2 0.21 4.6E-06 56.7 9.8 74 401-474 284-362 (630)
333 PRK05563 DNA polymerase III su 94.2 0.097 2.1E-06 58.3 6.9 44 292-341 117-160 (559)
334 COG2256 MGS1 ATPase related to 94.2 0.17 3.7E-06 52.4 8.0 18 180-197 49-66 (436)
335 PF13177 DNA_pol3_delta2: DNA 94.2 0.21 4.5E-06 46.0 8.0 41 293-338 101-141 (162)
336 KOG0745 Putative ATP-dependent 94.2 0.06 1.3E-06 56.0 4.6 25 179-205 226-250 (564)
337 PRK08533 flagellar accessory p 94.1 0.48 1E-05 46.4 10.9 54 176-243 21-74 (230)
338 PLN03025 replication factor C 94.1 0.53 1.2E-05 48.6 11.8 17 180-196 35-51 (319)
339 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.39 8.4E-06 46.9 10.3 52 178-243 19-70 (229)
340 PRK14951 DNA polymerase III su 94.1 0.4 8.7E-06 53.7 11.4 44 292-341 122-165 (618)
341 cd00561 CobA_CobO_BtuR ATP:cor 94.0 0.78 1.7E-05 42.0 11.2 53 292-348 93-147 (159)
342 PRK05973 replicative DNA helic 94.0 0.18 4E-06 49.3 7.6 65 164-243 50-114 (237)
343 COG1435 Tdk Thymidine kinase [ 94.0 0.57 1.2E-05 43.9 10.3 104 180-321 5-108 (201)
344 TIGR03877 thermo_KaiC_1 KaiC d 94.0 0.26 5.6E-06 48.6 8.8 53 178-244 20-72 (237)
345 TIGR02880 cbbX_cfxQ probable R 93.9 0.42 9.1E-06 48.4 10.2 18 179-196 58-75 (284)
346 PRK13341 recombination factor 93.9 0.35 7.6E-06 55.3 10.6 17 180-196 53-69 (725)
347 TIGR02782 TrbB_P P-type conjug 93.8 0.19 4.1E-06 51.3 7.6 58 165-233 117-175 (299)
348 TIGR03015 pepcterm_ATPase puta 93.8 0.3 6.5E-06 48.9 9.1 33 164-196 23-60 (269)
349 TIGR01425 SRP54_euk signal rec 93.8 1.5 3.2E-05 46.9 14.4 18 180-197 101-118 (429)
350 PRK14955 DNA polymerase III su 93.8 0.58 1.3E-05 49.9 11.7 41 292-338 125-165 (397)
351 cd03115 SRP The signal recogni 93.8 1.7 3.8E-05 40.2 13.5 55 293-351 81-136 (173)
352 TIGR00580 mfd transcription-re 93.8 0.3 6.4E-06 57.5 9.9 74 401-474 500-578 (926)
353 PRK07940 DNA polymerase III su 93.7 0.28 6.1E-06 52.0 9.0 47 292-344 115-161 (394)
354 PRK11823 DNA repair protein Ra 93.6 0.36 7.7E-06 52.3 9.6 52 179-244 80-131 (446)
355 PRK14965 DNA polymerase III su 93.5 0.45 9.8E-06 53.3 10.6 18 181-198 40-57 (576)
356 PRK06067 flagellar accessory p 93.5 0.4 8.6E-06 47.1 9.1 51 179-243 25-75 (234)
357 PF03969 AFG1_ATPase: AFG1-lik 93.5 1.5 3.1E-05 46.1 13.6 111 179-343 62-172 (362)
358 PRK08699 DNA polymerase III su 93.4 0.67 1.5E-05 47.9 10.8 35 165-199 2-41 (325)
359 cd01121 Sms Sms (bacterial rad 93.4 0.2 4.4E-06 52.7 7.0 52 178-243 81-132 (372)
360 PF06733 DEAD_2: DEAD_2; Inte 93.3 0.067 1.5E-06 50.0 3.1 45 264-308 113-159 (174)
361 PRK12724 flagellar biosynthesi 93.3 1.3 2.9E-05 46.9 13.0 57 293-350 298-356 (432)
362 PRK06964 DNA polymerase III su 93.3 0.55 1.2E-05 48.7 10.0 35 165-199 2-41 (342)
363 TIGR03499 FlhF flagellar biosy 93.3 0.17 3.7E-06 51.3 6.2 19 179-197 194-212 (282)
364 TIGR00959 ffh signal recogniti 93.3 1.4 3.1E-05 47.2 13.4 21 180-200 100-120 (428)
365 PRK14962 DNA polymerase III su 93.2 0.41 8.9E-06 52.1 9.4 18 181-198 38-55 (472)
366 PF05707 Zot: Zonular occluden 93.2 0.19 4E-06 47.9 5.9 55 294-349 79-135 (193)
367 PRK08939 primosomal protein Dn 93.0 0.79 1.7E-05 47.0 10.6 26 179-205 156-181 (306)
368 PRK05896 DNA polymerase III su 93.0 0.33 7.1E-06 53.9 8.2 19 180-198 39-57 (605)
369 PRK10416 signal recognition pa 93.0 1.9 4.1E-05 44.4 13.4 60 292-351 194-256 (318)
370 TIGR00678 holB DNA polymerase 93.0 0.4 8.7E-06 45.3 8.0 30 292-325 94-123 (188)
371 PRK10867 signal recognition pa 93.0 1.8 4E-05 46.4 13.6 19 180-198 101-119 (433)
372 cd00984 DnaB_C DnaB helicase C 92.9 0.59 1.3E-05 46.0 9.4 26 177-202 11-36 (242)
373 COG4626 Phage terminase-like p 92.9 0.62 1.3E-05 50.5 9.9 150 164-337 61-223 (546)
374 TIGR01073 pcrA ATP-dependent D 92.9 0.31 6.6E-06 56.5 8.2 71 163-244 3-73 (726)
375 COG1198 PriA Primosomal protei 92.8 0.3 6.6E-06 55.3 7.8 96 373-474 222-318 (730)
376 KOG0742 AAA+-type ATPase [Post 92.7 0.35 7.7E-06 50.0 7.3 16 180-195 385-400 (630)
377 TIGR01241 FtsH_fam ATP-depende 92.7 0.31 6.7E-06 53.7 7.6 16 180-195 89-104 (495)
378 PTZ00454 26S protease regulato 92.6 0.6 1.3E-05 49.7 9.4 53 140-195 140-195 (398)
379 PRK06647 DNA polymerase III su 92.6 0.66 1.4E-05 51.7 10.1 43 292-340 117-159 (563)
380 PRK03992 proteasome-activating 92.6 0.56 1.2E-05 49.9 9.3 17 179-195 165-181 (389)
381 KOG2028 ATPase related to the 92.6 0.77 1.7E-05 47.0 9.4 16 180-195 163-178 (554)
382 PRK04195 replication factor C 92.4 0.83 1.8E-05 50.1 10.5 18 179-196 39-56 (482)
383 PRK00440 rfc replication facto 92.4 1.6 3.4E-05 44.9 12.1 16 181-196 40-55 (319)
384 COG3267 ExeA Type II secretory 92.2 1.3 2.7E-05 43.4 10.1 29 175-204 46-75 (269)
385 PRK14963 DNA polymerase III su 92.2 0.47 1E-05 52.0 8.2 29 292-324 114-142 (504)
386 PRK10689 transcription-repair 92.2 0.71 1.5E-05 55.7 10.2 74 401-474 649-727 (1147)
387 COG1110 Reverse gyrase [DNA re 92.2 0.44 9.6E-06 54.8 7.9 60 401-460 125-190 (1187)
388 TIGR00767 rho transcription te 92.0 0.69 1.5E-05 48.7 8.7 20 176-195 165-184 (415)
389 PRK06090 DNA polymerase III su 92.0 0.43 9.3E-06 49.0 7.2 35 164-198 3-44 (319)
390 PF02606 LpxK: Tetraacyldisacc 92.0 9 0.0002 39.6 16.9 227 188-459 46-287 (326)
391 PF07728 AAA_5: AAA domain (dy 92.0 0.045 9.8E-07 48.9 0.1 15 181-195 1-15 (139)
392 COG0470 HolB ATPase involved i 92.0 1 2.3E-05 46.3 10.2 25 180-205 24-49 (325)
393 KOG0733 Nuclear AAA ATPase (VC 92.0 0.42 9.1E-06 52.0 7.1 48 294-342 604-658 (802)
394 PRK09112 DNA polymerase III su 92.0 0.42 9.1E-06 49.9 7.1 40 292-336 139-178 (351)
395 PRK14953 DNA polymerase III su 91.9 0.97 2.1E-05 49.4 10.1 30 292-325 117-146 (486)
396 PRK14948 DNA polymerase III su 91.8 0.46 9.9E-06 53.5 7.7 19 180-198 39-57 (620)
397 PRK11034 clpA ATP-dependent Cl 91.8 1.7 3.6E-05 50.2 12.3 26 171-196 197-224 (758)
398 TIGR02688 conserved hypothetic 91.8 0.76 1.7E-05 48.6 8.8 50 148-197 171-227 (449)
399 PF01443 Viral_helicase1: Vira 91.8 0.18 3.8E-06 49.3 4.0 14 182-195 1-14 (234)
400 PHA00012 I assembly protein 91.7 3.4 7.4E-05 42.1 12.8 25 182-206 4-28 (361)
401 PRK13900 type IV secretion sys 91.7 0.43 9.4E-06 49.4 6.9 45 175-233 156-200 (332)
402 PRK13851 type IV secretion sys 91.7 0.21 4.5E-06 51.9 4.5 46 174-233 157-202 (344)
403 KOG3973 Uncharacterized conser 91.7 0.56 1.2E-05 47.0 7.1 28 152-179 7-34 (465)
404 COG0552 FtsY Signal recognitio 91.6 4.1 8.9E-05 41.6 13.3 135 181-351 141-281 (340)
405 PRK08451 DNA polymerase III su 91.6 1.3 2.8E-05 48.8 10.7 40 292-336 115-154 (535)
406 PRK07471 DNA polymerase III su 91.6 1.4 2.9E-05 46.4 10.5 42 292-338 139-180 (365)
407 PF05729 NACHT: NACHT domain 91.5 1.3 2.8E-05 40.2 9.3 27 180-207 1-27 (166)
408 cd01126 TraG_VirD4 The TraG/Tr 91.5 0.15 3.2E-06 54.3 3.3 55 181-254 1-55 (384)
409 TIGR03880 KaiC_arch_3 KaiC dom 91.4 1.3 2.8E-05 43.1 9.6 52 179-244 16-67 (224)
410 cd03239 ABC_SMC_head The struc 91.4 0.31 6.8E-06 45.7 5.0 43 293-338 115-157 (178)
411 TIGR03345 VI_ClpV1 type VI sec 91.4 0.64 1.4E-05 54.5 8.6 28 169-196 192-225 (852)
412 PF01695 IstB_IS21: IstB-like 91.4 0.43 9.3E-06 44.7 5.9 30 176-206 44-73 (178)
413 PRK05986 cob(I)alamin adenolsy 91.3 2.9 6.4E-05 39.4 11.3 53 292-348 113-167 (191)
414 PF02534 T4SS-DNA_transf: Type 91.3 0.24 5.2E-06 54.2 4.7 49 180-243 45-93 (469)
415 TIGR01243 CDC48 AAA family ATP 91.3 0.95 2.1E-05 52.5 9.8 16 180-195 488-503 (733)
416 PRK12608 transcription termina 91.2 2.1 4.4E-05 44.8 11.1 38 167-205 118-158 (380)
417 PRK04537 ATP-dependent RNA hel 91.1 1.3 2.7E-05 49.7 10.3 71 222-302 259-333 (572)
418 PF03796 DnaB_C: DnaB-like hel 91.0 1.6 3.5E-05 43.5 10.1 125 179-322 19-162 (259)
419 CHL00176 ftsH cell division pr 91.0 0.95 2.1E-05 51.1 9.1 16 180-195 217-232 (638)
420 PTZ00361 26 proteosome regulat 90.7 1 2.3E-05 48.4 8.7 17 179-195 217-233 (438)
421 COG2255 RuvB Holliday junction 90.6 0.47 1E-05 47.0 5.4 28 277-308 90-117 (332)
422 KOG0298 DEAD box-containing he 90.6 0.43 9.4E-06 55.9 6.0 96 400-499 1220-1315(1394)
423 TIGR03689 pup_AAA proteasome A 90.6 1.2 2.5E-05 48.9 9.0 17 179-195 216-232 (512)
424 PRK14971 DNA polymerase III su 90.6 1.4 2.9E-05 49.8 9.9 42 292-339 119-160 (614)
425 TIGR00708 cobA cob(I)alamin ad 90.6 3.1 6.6E-05 38.6 10.5 53 292-348 95-149 (173)
426 TIGR02525 plasmid_TraJ plasmid 90.5 0.65 1.4E-05 48.8 6.9 27 179-206 149-175 (372)
427 TIGR01242 26Sp45 26S proteasom 90.5 1.3 2.8E-05 46.7 9.3 17 179-195 156-172 (364)
428 TIGR02237 recomb_radB DNA repa 90.4 0.72 1.6E-05 44.3 6.7 24 178-201 11-34 (209)
429 TIGR01650 PD_CobS cobaltochela 90.2 0.59 1.3E-05 47.9 6.0 23 173-195 58-80 (327)
430 PRK07133 DNA polymerase III su 90.2 0.71 1.5E-05 52.4 7.2 44 292-341 116-159 (725)
431 PRK13897 type IV secretion sys 90.2 0.33 7.1E-06 54.3 4.5 56 180-254 159-214 (606)
432 COG2909 MalT ATP-dependent tra 90.2 0.92 2E-05 51.5 7.9 42 295-340 130-171 (894)
433 TIGR02639 ClpA ATP-dependent C 90.1 1.4 3E-05 51.0 9.8 17 180-196 204-220 (731)
434 PF01637 Arch_ATPase: Archaeal 89.9 1.2 2.5E-05 43.2 7.8 16 179-194 20-35 (234)
435 KOG0740 AAA+-type ATPase [Post 89.8 2.3 4.9E-05 45.1 10.1 62 293-354 244-314 (428)
436 PF02572 CobA_CobO_BtuR: ATP:c 89.7 7.3 0.00016 36.1 12.3 53 292-348 94-148 (172)
437 COG2804 PulE Type II secretory 89.7 0.5 1.1E-05 50.7 5.2 42 165-207 242-285 (500)
438 PRK09376 rho transcription ter 89.7 2.3 5E-05 44.7 9.9 38 167-205 154-194 (416)
439 KOG0344 ATP-dependent RNA heli 89.7 6.9 0.00015 42.7 13.6 99 187-305 365-467 (593)
440 PRK06904 replicative DNA helic 89.6 2.2 4.7E-05 46.6 10.3 117 177-308 219-348 (472)
441 TIGR03878 thermo_KaiC_2 KaiC d 89.6 1.8 3.8E-05 43.3 8.9 26 178-203 35-60 (259)
442 PRK07399 DNA polymerase III su 89.6 2.3 5E-05 43.7 9.9 57 275-338 106-162 (314)
443 KOG0333 U5 snRNP-like RNA heli 89.5 1.2 2.6E-05 47.7 7.6 70 220-299 517-590 (673)
444 PRK13764 ATPase; Provisional 89.5 0.68 1.5E-05 51.6 6.3 27 178-205 256-282 (602)
445 TIGR03600 phage_DnaB phage rep 89.5 2 4.4E-05 46.2 9.9 115 176-307 191-318 (421)
446 COG1200 RecG RecG-like helicas 89.4 2.2 4.7E-05 47.5 9.9 74 401-474 311-389 (677)
447 COG4555 NatA ABC-type Na+ tran 89.3 2 4.3E-05 40.6 8.2 54 292-349 149-202 (245)
448 PF03237 Terminase_6: Terminas 89.3 4.1 8.9E-05 42.4 12.1 145 183-354 1-154 (384)
449 PRK04328 hypothetical protein; 89.3 2.4 5.2E-05 42.0 9.5 53 178-244 22-74 (249)
450 KOG1513 Nuclear helicase MOP-3 89.3 0.51 1.1E-05 52.6 5.0 181 130-338 238-453 (1300)
451 KOG2543 Origin recognition com 89.3 5.7 0.00012 41.2 12.1 46 293-342 114-161 (438)
452 PRK05416 glmZ(sRNA)-inactivati 89.2 6.7 0.00015 39.7 12.8 27 409-436 258-284 (288)
453 PRK10865 protein disaggregatio 89.2 0.97 2.1E-05 53.1 7.7 17 180-196 200-216 (857)
454 PF13481 AAA_25: AAA domain; P 89.2 4.9 0.00011 37.7 11.3 63 178-244 31-93 (193)
455 cd01394 radB RadB. The archaea 89.1 1.1 2.4E-05 43.3 6.9 23 179-201 19-41 (218)
456 PRK04841 transcriptional regul 89.0 3.1 6.7E-05 49.5 12.0 41 296-340 123-163 (903)
457 cd01130 VirB11-like_ATPase Typ 89.0 0.95 2.1E-05 42.7 6.2 31 165-195 10-41 (186)
458 TIGR00635 ruvB Holliday juncti 89.0 0.4 8.7E-06 49.1 3.9 16 180-195 31-46 (305)
459 PRK06305 DNA polymerase III su 89.0 1.6 3.4E-05 47.4 8.5 19 180-198 40-58 (451)
460 cd01128 rho_factor Transcripti 88.9 1.9 4.1E-05 42.7 8.4 19 176-194 13-31 (249)
461 PRK10590 ATP-dependent RNA hel 88.7 2.3 4.9E-05 46.3 9.7 68 222-299 247-318 (456)
462 PRK08058 DNA polymerase III su 88.7 0.89 1.9E-05 47.2 6.2 41 292-338 108-148 (329)
463 TIGR03346 chaperone_ClpB ATP-d 88.6 1.2 2.6E-05 52.4 8.0 17 180-196 195-211 (852)
464 TIGR00416 sms DNA repair prote 88.6 1.7 3.8E-05 47.1 8.5 52 178-243 93-144 (454)
465 PHA03372 DNA packaging termina 88.5 4.5 9.8E-05 44.6 11.4 129 179-338 202-336 (668)
466 TIGR02524 dot_icm_DotB Dot/Icm 88.5 0.74 1.6E-05 48.2 5.5 26 178-204 133-158 (358)
467 PRK09087 hypothetical protein; 88.5 1.6 3.6E-05 42.5 7.6 42 297-343 90-131 (226)
468 TIGR02868 CydC thiol reductant 88.5 0.93 2E-05 50.4 6.6 31 292-322 486-516 (529)
469 TIGR00602 rad24 checkpoint pro 88.5 2.2 4.7E-05 48.1 9.3 17 180-196 111-127 (637)
470 KOG0734 AAA+-type ATPase conta 88.3 2.8 6.1E-05 45.2 9.4 61 280-343 384-452 (752)
471 TIGR00763 lon ATP-dependent pr 88.2 5.1 0.00011 46.7 12.6 17 179-195 347-363 (775)
472 KOG0733 Nuclear AAA ATPase (VC 87.9 2.3 4.9E-05 46.6 8.6 57 135-194 180-238 (802)
473 COG2812 DnaX DNA polymerase II 87.8 0.5 1.1E-05 51.4 3.8 29 292-324 117-145 (515)
474 TIGR00665 DnaB replicative DNA 87.8 2.1 4.7E-05 46.2 8.8 113 178-307 194-318 (434)
475 KOG0729 26S proteasome regulat 87.8 11 0.00023 37.2 12.3 18 179-196 211-228 (435)
476 PF00437 T2SE: Type II/IV secr 87.8 0.71 1.5E-05 46.3 4.7 44 176-232 124-167 (270)
477 TIGR02397 dnaX_nterm DNA polym 87.8 1.4 3E-05 46.2 7.0 17 180-196 37-53 (355)
478 COG3973 Superfamily I DNA and 87.7 2.9 6.2E-05 45.8 9.2 63 401-479 655-717 (747)
479 PRK04837 ATP-dependent RNA hel 87.7 2.8 6.1E-05 45.1 9.6 71 222-302 257-331 (423)
480 COG0541 Ffh Signal recognition 87.7 8.9 0.00019 40.6 12.5 135 181-352 102-237 (451)
481 PRK13850 type IV secretion sys 87.6 0.64 1.4E-05 52.7 4.6 50 179-243 139-188 (670)
482 TIGR00614 recQ_fam ATP-depende 87.6 2.1 4.5E-05 46.8 8.5 59 401-459 51-109 (470)
483 PLN00020 ribulose bisphosphate 87.5 0.72 1.6E-05 47.9 4.4 16 180-195 149-164 (413)
484 COG0513 SrmB Superfamily II DN 87.5 2.8 6.1E-05 46.3 9.5 68 222-299 275-346 (513)
485 COG1132 MdlB ABC-type multidru 87.4 1.1 2.5E-05 50.2 6.6 43 292-338 481-523 (567)
486 TIGR01243 CDC48 AAA family ATP 87.4 2.8 6E-05 48.6 9.9 18 178-195 211-228 (733)
487 COG0630 VirB11 Type IV secreto 87.4 0.86 1.9E-05 46.8 5.1 56 163-232 126-182 (312)
488 cd00267 ABC_ATPase ABC (ATP-bi 87.4 1.8 3.9E-05 39.4 6.8 31 292-322 96-126 (157)
489 CHL00095 clpC Clp protease ATP 87.4 4 8.6E-05 48.0 11.2 17 180-196 201-217 (821)
490 TIGR00631 uvrb excinuclease AB 87.4 8.6 0.00019 43.8 13.4 116 220-347 442-561 (655)
491 KOG1133 Helicase of the DEAD s 87.3 0.8 1.7E-05 50.5 4.8 43 164-206 15-61 (821)
492 PRK05748 replicative DNA helic 87.2 3.6 7.9E-05 44.6 10.1 113 178-307 202-327 (448)
493 COG4371 Predicted membrane pro 87.2 1.5 3.3E-05 42.0 6.1 11 527-537 38-48 (334)
494 KOG0732 AAA+-type ATPase conta 87.1 1.3 2.8E-05 51.8 6.7 51 142-195 262-315 (1080)
495 PF10593 Z1: Z1 domain; Inter 87.0 1.8 3.9E-05 42.6 6.9 102 425-536 110-217 (239)
496 KOG0741 AAA+-type ATPase [Post 87.0 1.5 3.3E-05 47.1 6.5 58 136-195 210-272 (744)
497 cd00268 DEADc DEAD-box helicas 86.9 6.1 0.00013 37.4 10.5 71 401-475 69-149 (203)
498 PRK09435 membrane ATPase/prote 86.9 11 0.00024 39.0 12.8 55 296-350 197-255 (332)
499 PF05918 API5: Apoptosis inhib 86.8 0.2 4.2E-06 54.8 0.0 8 28-35 513-520 (556)
500 PRK14701 reverse gyrase; Provi 86.7 3.5 7.6E-05 51.6 10.5 82 373-459 99-186 (1638)
No 1
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-85 Score=666.76 Aligned_cols=429 Identities=61% Similarity=0.969 Sum_probs=405.8
Q ss_pred cchhhhcccCCCCCcCCCcccccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCC
Q 007365 110 QPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTG 189 (606)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TG 189 (606)
..+....++++||++|++++++.++..+|.++.+|.+..+.+.+..+++..+|..|||+|+.+||.+..++|+++||+||
T Consensus 42 ~~~~~~~~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTG 121 (482)
T KOG0335|consen 42 QAFFLGISTGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTG 121 (482)
T ss_pred hhhhhccchhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCC
Confidence 33444467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhc
Q 007365 190 SGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELER 269 (606)
Q Consensus 190 sGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~ 269 (606)
||||.+||+|++.++++.....+.......+|.+||++||||||.|+++++++|.+.+.++++.+||+.+...+.+.+.+
T Consensus 122 sGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~ 201 (482)
T KOG0335|consen 122 SGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKR 201 (482)
T ss_pred CcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhcc
Confidence 99999999999999999887666655556789999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecHHHHHHHHHhccccccceeEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHH
Q 007365 270 GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS 348 (606)
Q Consensus 270 ~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~ 348 (606)
+|+|+|||||+|.++++.+++.|.++++|||||||+|+| |+|+++|++|+.++.+++...+|++|||||+|.+++.++.
T Consensus 202 gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~ 281 (482)
T KOG0335|consen 202 GCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAA 281 (482)
T ss_pred CccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHH
Confidence 999999999999999999999999999999999999999 9999999999999999988999999999999999999999
Q ss_pred HhhcC-cEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcc--cCCCCceEEEEEcchhhHHHHHHHHHhCC
Q 007365 349 DFLAN-YVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANG--VHGKQSLTLVFVETKKGADALEHWLYMNG 425 (606)
Q Consensus 349 ~~l~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~--~~~~~~~~LVF~~s~~~~~~l~~~L~~~~ 425 (606)
.|+.+ |+++.+.+.+...+++.|.+.++.+.+|...|+++|....... ......+++|||++++.|+.|+.+|...+
T Consensus 282 ~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 282 DFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG 361 (482)
T ss_pred HHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC
Confidence 99986 9999999999999999999999999999999999998766331 11123489999999999999999999999
Q ss_pred CCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEe
Q 007365 426 FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 505 (606)
Q Consensus 426 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~ 505 (606)
+++..||++.+|.+|+++++.|+.|+++|||||+|++||||||+|+||||||+|.++++|+||||||||+|+.|.++.||
T Consensus 362 ~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 362 YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHhcCcccHHHHHHHHhc
Q 007365 506 NENNLSLARPLAELMQESNQEVPAWLTRYASRA 538 (606)
Q Consensus 506 ~~~~~~~~~~l~~~l~~~~q~vp~~L~~~~~~~ 538 (606)
+..+..+++.|.++|.+++|++|+||.+++...
T Consensus 442 n~~~~~i~~~L~~~l~ea~q~vP~wl~~~~~~~ 474 (482)
T KOG0335|consen 442 NEKNQNIAKALVEILTEANQEVPQWLSELSRER 474 (482)
T ss_pred ccccchhHHHHHHHHHHhcccCcHHHHhhhhhc
Confidence 999999999999999999999999999976543
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-82 Score=658.73 Aligned_cols=389 Identities=49% Similarity=0.794 Sum_probs=366.5
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcE
Q 007365 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL 222 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~ 222 (606)
.|.++++++++...++..+|.+|||||.++||.++.|+|++..|.||||||++|++|++.++..... ...+..+|+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~----~~~~~~~P~ 167 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG----KLSRGDGPI 167 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccc----cccCCCCCe
Confidence 7999999999999999999999999999999999999999999999999999999999999987421 123466899
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEec
Q 007365 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 302 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDE 302 (606)
+|||+||||||.|+.+++.+|.....++++|+|||.++..|++.+.++++|+|+||+||+++++...++|+.++|+||||
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEecccc--CccCceeEEEEEeccch
Q 007365 303 ADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVG--SSTDLIVQRVEYVHESD 380 (606)
Q Consensus 303 ah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 380 (606)
||+|++|||++++++|+.++. +..+|++|+|||||.+++.++..||.+|+.+.+.... ....++.|.++.++...
T Consensus 248 ADrMldmGFe~qI~~Il~~i~---~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~ 324 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIP---RPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETA 324 (519)
T ss_pred HHhhhccccHHHHHHHHHhcC---CCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHH
Confidence 999999999999999999983 3455999999999999999999999999999887554 66788999999999999
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
|...|.++|.... ..+..|+||||+|++.|+.|+..|+..++++..|||+.+|.+|+.+|+.|++|+++|||||||
T Consensus 325 K~~~l~~lL~~~~----~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV 400 (519)
T KOG0331|consen 325 KLRKLGKLLEDIS----SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV 400 (519)
T ss_pred HHHHHHHHHHHHh----ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccc
Confidence 9999999999887 234788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHHHHHHHHhccC
Q 007365 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 540 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L~~~~~~~~~ 540 (606)
|+||||||+|++|||||+|.++++|+||+|||||+|++|.+++||+..+...+..+.+.+++++|++|+.|..++....+
T Consensus 401 AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~ 480 (519)
T KOG0331|consen 401 AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGS 480 (519)
T ss_pred ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CC
Q 007365 541 GG 542 (606)
Q Consensus 541 ~~ 542 (606)
++
T Consensus 481 ~~ 482 (519)
T KOG0331|consen 481 GG 482 (519)
T ss_pred CC
Confidence 43
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.9e-74 Score=630.73 Aligned_cols=395 Identities=47% Similarity=0.761 Sum_probs=363.8
Q ss_pred CCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccC
Q 007365 133 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 212 (606)
Q Consensus 133 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~ 212 (606)
.+..+|.|+.+|++++|++.+++.|..++|.+|||+|.++||.++.++|+|++||||||||++|++|++.++......
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~-- 198 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-- 198 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--
Confidence 577889999999999999999999999999999999999999999999999999999999999999999888754321
Q ss_pred CCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccc
Q 007365 213 PRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSL 292 (606)
Q Consensus 213 ~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l 292 (606)
....+|.+|||+||||||.|+++++++|.....+++.+++++.+...+...+..+++|||+||++|++++.+....+
T Consensus 199 ---~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l 275 (545)
T PTZ00110 199 ---RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNL 275 (545)
T ss_pred ---cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCCh
Confidence 12346889999999999999999999999888999999999999999999999999999999999999999888889
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc-CcEEEEecccc-CccCcee
Q 007365 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA-NYVFLAVGRVG-SSTDLIV 370 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~-~~~~~~~~~~~-~~~~~i~ 370 (606)
+++++|||||||+|++++|++++.+|+..+ ++.+|+++||||+|.+++.+++.++. +++.+.+.... .....+.
T Consensus 276 ~~v~~lViDEAd~mld~gf~~~i~~il~~~----~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~ 351 (545)
T PTZ00110 276 RRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIK 351 (545)
T ss_pred hhCcEEEeehHHhhhhcchHHHHHHHHHhC----CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCee
Confidence 999999999999999999999999999988 67889999999999999999999886 57777776554 3456788
Q ss_pred EEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCC
Q 007365 371 QRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG 450 (606)
Q Consensus 371 ~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g 450 (606)
+.+..+....|...|.+++..... ...++||||++++.|+.|++.|...++++..+||++++.+|+.+++.|++|
T Consensus 352 q~~~~~~~~~k~~~L~~ll~~~~~-----~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G 426 (545)
T PTZ00110 352 QEVFVVEEHEKRGKLKMLLQRIMR-----DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG 426 (545)
T ss_pred EEEEEEechhHHHHHHHHHHHhcc-----cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC
Confidence 888888888888888888876542 267899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHH
Q 007365 451 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAW 530 (606)
Q Consensus 451 ~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~ 530 (606)
+.+|||||+++++|||||+|++|||||+|.++++|+||+|||||+|++|.|++|+++++...+.+|.++|+++.|++|++
T Consensus 427 ~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~ 506 (545)
T PTZ00110 427 KSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPE 506 (545)
T ss_pred CCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC
Q 007365 531 LTRYASRANYG 541 (606)
Q Consensus 531 L~~~~~~~~~~ 541 (606)
|.+++....++
T Consensus 507 l~~~~~~~~~~ 517 (545)
T PTZ00110 507 LEKLSNERSNG 517 (545)
T ss_pred HHHHHHHhcCC
Confidence 99999876543
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-75 Score=581.55 Aligned_cols=398 Identities=44% Similarity=0.701 Sum_probs=376.7
Q ss_pred ccccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhh
Q 007365 129 PVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQ 208 (606)
Q Consensus 129 ~v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~ 208 (606)
.+.+++..+|.|+.+|+.+++++.|...+.+..|.+|||+|.+++|..+.++|++-+|.||||||.||+.|++.+++.++
T Consensus 210 nlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~ 289 (731)
T KOG0339|consen 210 NLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP 289 (731)
T ss_pred cceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchh
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc
Q 007365 209 YVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 288 (606)
Q Consensus 209 ~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~ 288 (606)
...+ ..+|..||||||||||.||+.++++|++..+++++++|||.+.++|...|..++.||||||+||++++.-.
T Consensus 290 eL~~-----g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK 364 (731)
T KOG0339|consen 290 ELKP-----GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK 364 (731)
T ss_pred hhcC-----CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh
Confidence 6543 66899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCc
Q 007365 289 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDL 368 (606)
Q Consensus 289 ~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~ 368 (606)
..++.+++||||||+|+|+++||+++++.|..++ .+++|+|+|||||+..++.+++++|.+++.+..+.+...+..
T Consensus 365 atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi----rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~d 440 (731)
T KOG0339|consen 365 ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI----RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANED 440 (731)
T ss_pred cccceeeeEEEEechhhhhccccHHHHHHHHhhc----CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccc
Confidence 9999999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred eeEEEEEecc-chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhc
Q 007365 369 IVQRVEYVHE-SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSF 447 (606)
Q Consensus 369 i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F 447 (606)
|.|.+.++.. ..|+..|+..|.... ..+++|||+..+..++.++..|+..+|.+..+|++|.|.+|.++|..|
T Consensus 441 ITQ~V~V~~s~~~Kl~wl~~~L~~f~------S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~f 514 (731)
T KOG0339|consen 441 ITQTVSVCPSEEKKLNWLLRHLVEFS------SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKF 514 (731)
T ss_pred hhheeeeccCcHHHHHHHHHHhhhhc------cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHH
Confidence 9999988765 456777777666554 256799999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcc
Q 007365 448 KSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEV 527 (606)
Q Consensus 448 ~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~v 527 (606)
+++..+||||||++++|+|||++..|||||+-.+++.|+|||||+||+|.+|++++++++.|..++-.|++.|+.+.|.|
T Consensus 515 Kkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnV 594 (731)
T KOG0339|consen 515 KKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNV 594 (731)
T ss_pred hhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhccCC
Q 007365 528 PAWLTRYASRANYG 541 (606)
Q Consensus 528 p~~L~~~~~~~~~~ 541 (606)
|+.|.+|+-..+..
T Consensus 595 P~~l~dlamk~s~f 608 (731)
T KOG0339|consen 595 PDELMDLAMKSSWF 608 (731)
T ss_pred ChHHHHHHhhhhhh
Confidence 99999999765543
No 5
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-75 Score=571.59 Aligned_cols=389 Identities=43% Similarity=0.698 Sum_probs=358.2
Q ss_pred CCCCCCCCCccccC-CCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccC
Q 007365 134 GENVPPPVNTFAEI-DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 212 (606)
Q Consensus 134 ~~~~p~~~~~f~~~-~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~ 212 (606)
...+|.|.-+|++. .-.+++++++++.+|.+|||+|.+|||++++|.|++..|+||+|||++||+|-+.++......
T Consensus 211 krpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~-- 288 (629)
T KOG0336|consen 211 KRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR-- 288 (629)
T ss_pred cccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh--
Confidence 44678899999864 677999999999999999999999999999999999999999999999999998877654321
Q ss_pred CCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccc
Q 007365 213 PRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSL 292 (606)
Q Consensus 213 ~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l 292 (606)
.....+|.+|+++||||||.|+.-+++++.+. +++.+|+|||.+..+|+..++++.+|+|+||++|.++.....++|
T Consensus 289 --~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l 365 (629)
T KOG0336|consen 289 --REQRNGPGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINL 365 (629)
T ss_pred --hhccCCCceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeee
Confidence 22456788999999999999999999998766 889999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCc-cCceeE
Q 007365 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSS-TDLIVQ 371 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~-~~~i~~ 371 (606)
..+.||||||||+||||+|+++|++|+..+ .+++|++|.|||||..+..++..|+.+++.+.++..+.. +..+.|
T Consensus 366 ~siTYlVlDEADrMLDMgFEpqIrkilldi----RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ 441 (629)
T KOG0336|consen 366 ASITYLVLDEADRMLDMGFEPQIRKILLDI----RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQ 441 (629)
T ss_pred eeeEEEEecchhhhhcccccHHHHHHhhhc----CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeee
Confidence 999999999999999999999999999998 789999999999999999999999999999988877654 466778
Q ss_pred EEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCC
Q 007365 372 RVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK 451 (606)
Q Consensus 372 ~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~ 451 (606)
.+.+..+++|++.+..++... ....++||||..+..|+.|..-|...++.+-.|||+..|.+|+.+++.|++|+
T Consensus 442 ~i~v~~d~~k~~~~~~f~~~m------s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~ 515 (629)
T KOG0336|consen 442 NIIVTTDSEKLEIVQFFVANM------SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE 515 (629)
T ss_pred eEEecccHHHHHHHHHHHHhc------CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc
Confidence 887777788886655555443 34788999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHHH
Q 007365 452 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWL 531 (606)
Q Consensus 452 ~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L 531 (606)
++||||||+++||||+|+|+||+|||+|.++++|+||+||+||+|++|.+++|++.+|...+..|+++|++++|+||+.|
T Consensus 516 vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 516 VRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred eEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 007365 532 TRYASR 537 (606)
Q Consensus 532 ~~~~~~ 537 (606)
..+|.+
T Consensus 596 ~~mAer 601 (629)
T KOG0336|consen 596 VRMAER 601 (629)
T ss_pred HHHHHH
Confidence 999986
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-75 Score=567.42 Aligned_cols=366 Identities=40% Similarity=0.617 Sum_probs=349.6
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCccc
Q 007365 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTV 219 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 219 (606)
...+|.++++.+.|.++++..++.+||++|+++||.++.++|+|+.|+||||||.+|++||+++++.+..
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~---------- 128 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK---------- 128 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC----------
Confidence 3457999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred CcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh-ccccccceeEE
Q 007365 220 YPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMIRYL 298 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~-~~~~l~~~~~l 298 (606)
.|++|||+||||||.||.+.+..+....+++++++.||.+...|...+.+.++|||||||+|.+++++ ..++++.++|+
T Consensus 129 ~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 26799999999999999999999999999999999999999999999999999999999999999995 55699999999
Q ss_pred EEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEecc
Q 007365 299 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHE 378 (606)
Q Consensus 299 VlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 378 (606)
|+||||+++++.|.+.+.+|+..+ |..+|+++||||++..+.++....+.++..+.+.......+.+.|.|.+++.
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~i----p~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~ 284 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVI----PRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG 284 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhc----CccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc
Confidence 999999999999999999999999 8999999999999999999999999999999999888899999999999999
Q ss_pred chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc
Q 007365 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT 458 (606)
Q Consensus 379 ~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 458 (606)
..|...|..+|.+.. ...+||||++...++.++-+|+..++.+..+||+|+|..|.-+++.|++|.+.|||||
T Consensus 285 k~K~~yLV~ll~e~~-------g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T 357 (476)
T KOG0330|consen 285 KDKDTYLVYLLNELA-------GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT 357 (476)
T ss_pred cccchhHHHHHHhhc-------CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEec
Confidence 999999999998765 5779999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCc
Q 007365 459 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQE 526 (606)
Q Consensus 459 ~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~ 526 (606)
|+++||||||.|++|||||+|.+..+||||+||++|+|.+|.+++|++..|.+.+.+|...+.+...+
T Consensus 358 DVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 358 DVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred chhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999988887655
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.4e-74 Score=580.89 Aligned_cols=403 Identities=42% Similarity=0.691 Sum_probs=374.4
Q ss_pred CCcccccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007365 126 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 126 ~~~~v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
+++.+...+..+|.|+.+|++.+|+.++++.+...+|..|+|+|..+||..++++|+|..|.||||||++|++|++..+.
T Consensus 229 edynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 229 EDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred cceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHH
Q 007365 206 REQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL 285 (606)
Q Consensus 206 ~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l 285 (606)
...+..+ ......+|.++||+|||+|++||.++..+|+..++++++.++||.+..+|--.+..+|+|+|+||++|++.|
T Consensus 309 slP~~~~-~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 309 SLPPMAR-LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred cCCCcch-hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHH
Confidence 6543322 123456899999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCC---------------------CceEEEEeccChHHHH
Q 007365 286 ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG---------------------VRQTMLFSATFPKEIQ 344 (606)
Q Consensus 286 ~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~---------------------~~q~ll~SAT~~~~i~ 344 (606)
++..+.++.+.+||+||||+|+||||++++..|+.++.....+ -+|++|||||+|+.+.
T Consensus 388 enr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve 467 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE 467 (673)
T ss_pred HHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH
Confidence 9999999999999999999999999999999999998543222 1799999999999999
Q ss_pred HHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC
Q 007365 345 KLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN 424 (606)
Q Consensus 345 ~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~ 424 (606)
.+++.||.+++.+.++..+...+.+.|.+.++...+|...|+++|.... ..++|||+|+++.|+.|++.|...
T Consensus 468 rlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~-------~ppiIIFvN~kk~~d~lAk~LeK~ 540 (673)
T KOG0333|consen 468 RLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNF-------DPPIIIFVNTKKGADALAKILEKA 540 (673)
T ss_pred HHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCC-------CCCEEEEEechhhHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998763 667999999999999999999999
Q ss_pred CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEE
Q 007365 425 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 504 (606)
Q Consensus 425 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~ 504 (606)
++.++.|||+-+|++|+.+|..|+.|...||||||+++||||||+|.+|||||++.++++|+||||||||+|+.|.+++|
T Consensus 541 g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSf 620 (673)
T KOG0333|consen 541 GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISF 620 (673)
T ss_pred cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCChhhHHHHHHHHHH-hcCcccHHHHHHHH
Q 007365 505 FNENNLSLARPLAELMQE-SNQEVPAWLTRYAS 536 (606)
Q Consensus 505 ~~~~~~~~~~~l~~~l~~-~~q~vp~~L~~~~~ 536 (606)
+++.|...+.+|.+.|.+ ...-.|..|...-.
T Consensus 621 lt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~ 653 (673)
T KOG0333|consen 621 LTPADTAVFYDLKQALRESVKSHCPPELANHPD 653 (673)
T ss_pred eccchhHHHHHHHHHHHHhhhccCChhhccChh
Confidence 999999999999888774 56678888776543
No 8
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2e-73 Score=554.43 Aligned_cols=395 Identities=42% Similarity=0.742 Sum_probs=369.0
Q ss_pred ccccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhh
Q 007365 129 PVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQ 208 (606)
Q Consensus 129 ~v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~ 208 (606)
-+.+.++.+|+|+.+|.++.++..+++.+++.++..|||+|.+.||.++++||+|-.|-||||||++|.+|++-..+++.
T Consensus 157 ~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE 236 (610)
T KOG0341|consen 157 HILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQE 236 (610)
T ss_pred eEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999987666544
Q ss_pred cccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhh------cCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHH
Q 007365 209 YVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSY------QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLV 282 (606)
Q Consensus 209 ~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~------~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~ 282 (606)
.. ..-.+..+|..||+||+||||.|+++.+..|.. ...+++.++.||.+..+|+..+.++++|+|+||++|.
T Consensus 237 ~~--lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~ 314 (610)
T KOG0341|consen 237 MM--LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLM 314 (610)
T ss_pred hc--CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHH
Confidence 32 224567899999999999999999999988753 2357889999999999999999999999999999999
Q ss_pred HHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccc
Q 007365 283 DLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRV 362 (606)
Q Consensus 283 ~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~ 362 (606)
++|....++|.-++||++||||||+|+||+.+++.|+..+ ...+|+++||||+|..++.+++..|..|+.+.+++.
T Consensus 315 DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F----K~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRA 390 (610)
T KOG0341|consen 315 DMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF----KGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRA 390 (610)
T ss_pred HHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH----hhhhheeeeeccccHHHHHHHHhhcccceEEecccc
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred cCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHH
Q 007365 363 GSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 442 (606)
Q Consensus 363 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 442 (606)
+..+-++.|.+.++..+.|...|++.|... ..++||||..+..++.++++|--.|..++.|||+..|++|..
T Consensus 391 GAAsldViQevEyVkqEaKiVylLeCLQKT--------~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ 462 (610)
T KOG0341|consen 391 GAASLDVIQEVEYVKQEAKIVYLLECLQKT--------SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHY 462 (610)
T ss_pred cccchhHHHHHHHHHhhhhhhhHHHHhccC--------CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHH
Confidence 999999999999999999999998888764 567999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccC-ChhhHHHHHHHHH
Q 007365 443 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN-NLSLARPLAELMQ 521 (606)
Q Consensus 443 ~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~-~~~~~~~l~~~l~ 521 (606)
.++.|+.|+.+|||||||++.|||+|++.||||||+|..+++|+||||||||.|++|.+++|++++ +...+-+|..+|.
T Consensus 463 ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~ 542 (610)
T KOG0341|consen 463 AIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQ 542 (610)
T ss_pred HHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999974 5567888999999
Q ss_pred HhcCcccHHHHHHHHh
Q 007365 522 ESNQEVPAWLTRYASR 537 (606)
Q Consensus 522 ~~~q~vp~~L~~~~~~ 537 (606)
++.|++|+.|.+++..
T Consensus 543 EakQ~vP~~L~~L~~~ 558 (610)
T KOG0341|consen 543 EAKQEVPPVLAELAGP 558 (610)
T ss_pred HhhccCCHHHHHhCCC
Confidence 9999999999999853
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-70 Score=590.89 Aligned_cols=373 Identities=45% Similarity=0.699 Sum_probs=342.0
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
..|+++++++.+++++...+|..|||+|..+||.++.++|++++|+||||||++|++|+++++...... ...+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~-------~~~~ 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVER-------KYVS 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccccc-------CCCc
Confidence 579999999999999999999999999999999999999999999999999999999999996643100 1112
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcC-CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
+||++||||||.|+++++.+|.... ++++++++||.+...|...+.++++|||+||+||++++.+..++++.+.+|||
T Consensus 102 -aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 102 -ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred -eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 9999999999999999999999888 79999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccC--ccCceeEEEEEecc
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGS--STDLIVQRVEYVHE 378 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~--~~~~i~~~~~~~~~ 378 (606)
||||+|++|||.+++..|+..+ +.++|+++||||+|..+..++..++.++..+.+..... ....+.|.+..+..
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~----p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKAL----PPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhC----CcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 9999999999999999999999 66999999999999999999999999999888875444 78899999999988
Q ss_pred ch-hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEE
Q 007365 379 SD-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 457 (606)
Q Consensus 379 ~~-k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 457 (606)
.. |...|..++.... ..++||||++++.|+.|+..|...++.+..|||+|+|.+|.++++.|++|+.+||||
T Consensus 257 ~~~k~~~L~~ll~~~~-------~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVa 329 (513)
T COG0513 257 EEEKLELLLKLLKDED-------EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVA 329 (513)
T ss_pred HHHHHHHHHHHHhcCC-------CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 76 8888888887543 446999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccC-ChhhHHHHHHHHHHh---cCcccHHHHH
Q 007365 458 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN-NLSLARPLAELMQES---NQEVPAWLTR 533 (606)
Q Consensus 458 T~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~-~~~~~~~l~~~l~~~---~q~vp~~L~~ 533 (606)
||+++||||||+|++|||||+|.++++|+||+|||||+|.+|.+++|+++. +...+..+.+.+... ...+|.+...
T Consensus 330 TDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~~ 409 (513)
T COG0513 330 TDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPE 409 (513)
T ss_pred echhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchhh
Confidence 999999999999999999999999999999999999999999999999985 888888888887665 3466655443
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-70 Score=514.27 Aligned_cols=375 Identities=34% Similarity=0.565 Sum_probs=354.5
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcc
Q 007365 139 PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGART 218 (606)
Q Consensus 139 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 218 (606)
.++.+|++++|.++|++.+...+|.+|..+|+.||+.+++++|++++|+.|+|||.+|.+-+++.+.-..
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~---------- 93 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV---------- 93 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc----------
Confidence 3567899999999999999999999999999999999999999999999999999999988876654321
Q ss_pred cCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEE
Q 007365 219 VYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 298 (606)
Q Consensus 219 ~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~l 298 (606)
...++||++||||||.|+.+.+..+....++.+..+.||.+..+.++.+..+++++.+||+++++++++..+..+.+++|
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkml 173 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKML 173 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEE
Confidence 12359999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEecc
Q 007365 299 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHE 378 (606)
Q Consensus 299 VlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 378 (606)
||||||.|++.+|.+++..|+..+ |+..|++++|||+|.++.++.+.|+.+++.+-+.+.+...+.|.|.+..++.
T Consensus 174 VLDEaDemL~kgfk~Qiydiyr~l----p~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~ 249 (400)
T KOG0328|consen 174 VLDEADEMLNKGFKEQIYDIYRYL----PPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEK 249 (400)
T ss_pred EeccHHHHHHhhHHHHHHHHHHhC----CCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeech
Confidence 999999999999999999999999 8899999999999999999999999999999999999999999999998887
Q ss_pred ch-hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEE
Q 007365 379 SD-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 457 (606)
Q Consensus 379 ~~-k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 457 (606)
++ |+..|+++..... -..++|||+|++.++.|.+.|++.++.+..+||+|+|++|++++.+|++|+.+|||+
T Consensus 250 EewKfdtLcdLYd~Lt-------ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred hhhhHhHHHHHhhhhe-------hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 77 9999999887664 456899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHHHHHH
Q 007365 458 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRY 534 (606)
Q Consensus 458 T~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L~~~ 534 (606)
||+.+||||+|.|++|||||+|.+.+.|+|||||.||.|++|.++-|+..+|...++++.+++.....++|..+.++
T Consensus 323 TDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred echhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886553
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-67 Score=575.79 Aligned_cols=395 Identities=37% Similarity=0.631 Sum_probs=360.0
Q ss_pred ccccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhh
Q 007365 129 PVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQ 208 (606)
Q Consensus 129 ~v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~ 208 (606)
.+.+.+...|.|+.+|++++|++.++++|...+|.+|||+|.++||.++.++|+|++||||||||++|++|++.+++...
T Consensus 108 ~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~ 187 (518)
T PLN00206 108 EIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIR 187 (518)
T ss_pred CCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc
Q 007365 209 YVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 288 (606)
Q Consensus 209 ~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~ 288 (606)
... .....+|++|||+|||+||.|++++++.+....++++..++||.....+...+..+++|+|+||++|.+++.+.
T Consensus 188 ~~~---~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~ 264 (518)
T PLN00206 188 SGH---PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH 264 (518)
T ss_pred ccc---ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 111 11124678999999999999999999999888889999999999999998888889999999999999999988
Q ss_pred cccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCc
Q 007365 289 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDL 368 (606)
Q Consensus 289 ~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~ 368 (606)
.+.++++++|||||||+|++++|.+++..|+..+ +.+|+++||||++.+++.++..++.+++.+.+.........
T Consensus 265 ~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-----~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~ 339 (518)
T PLN00206 265 DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-----SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKA 339 (518)
T ss_pred CccchheeEEEeecHHHHhhcchHHHHHHHHHhC-----CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence 8899999999999999999999999999999887 35799999999999999999999999999888877777777
Q ss_pred eeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHh-CCCCcEEeeCccCHHHHHHHHHhc
Q 007365 369 IVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYM-NGFPATTIHGDRTQQERELALRSF 447 (606)
Q Consensus 369 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~F 447 (606)
+.+.+.++....|...+.+++..... ...++||||+++..++.|++.|.. .++.+..+||+|++.+|..+++.|
T Consensus 340 v~q~~~~~~~~~k~~~l~~~l~~~~~-----~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~F 414 (518)
T PLN00206 340 VKQLAIWVETKQKKQKLFDILKSKQH-----FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSF 414 (518)
T ss_pred eeEEEEeccchhHHHHHHHHHHhhcc-----cCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHH
Confidence 88888888888888888888765431 145799999999999999999975 689999999999999999999999
Q ss_pred cCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcc
Q 007365 448 KSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEV 527 (606)
Q Consensus 448 ~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~v 527 (606)
++|+.+|||||+++++|||||+|++|||||+|.++++|+||+|||||.|..|.|++|++.++...+.+|.+.|+.+.+++
T Consensus 415 r~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~v 494 (518)
T PLN00206 415 LVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAI 494 (518)
T ss_pred HCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHH
Q 007365 528 PAWLTRYAS 536 (606)
Q Consensus 528 p~~L~~~~~ 536 (606)
|++|..+..
T Consensus 495 p~~l~~~~~ 503 (518)
T PLN00206 495 PRELANSRY 503 (518)
T ss_pred CHHHHhChh
Confidence 999998763
No 12
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-69 Score=539.81 Aligned_cols=360 Identities=39% Similarity=0.599 Sum_probs=333.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
.+|.+++|+..|++++..+||.+|||+|..+||..+-++|++.||.||||||.||++|+|.+++-.... ....
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-------~~~T 253 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-------VAAT 253 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-------Ccce
Confidence 479999999999999999999999999999999999999999999999999999999999999865322 2345
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc-cccccceeEEEE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLAL 300 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~-~~~l~~~~~lVl 300 (606)
+||||+|||||+.|+++..++++..+.+.+++++||.+.+.|...|+..+||+|+|||||+++|.+. .++++++.+|||
T Consensus 254 RVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 7999999999999999999999999999999999999999999999999999999999999999875 468999999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEec---
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVH--- 377 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~--- 377 (606)
|||||||+.+|.+++..|+..| +..+|++|||||+..++..|+.-.|..|+.+.+.........+.|.|+.+.
T Consensus 334 DEADRMLeegFademnEii~lc----pk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~r 409 (691)
T KOG0338|consen 334 DEADRMLEEGFADEMNEIIRLC----PKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKR 409 (691)
T ss_pred chHHHHHHHHHHHHHHHHHHhc----cccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecccc
Confidence 9999999999999999999999 899999999999999999999999999999999888888888888877654
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEE
Q 007365 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 457 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 457 (606)
+..+...+..++...+ ...+|||+.|++.|..+.-+|--.|+.+.-+||.++|.+|-+.++.|+..+++||||
T Consensus 410 e~dRea~l~~l~~rtf-------~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLia 482 (691)
T KOG0338|consen 410 EGDREAMLASLITRTF-------QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIA 482 (691)
T ss_pred ccccHHHHHHHHHHhc-------ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEE
Confidence 3345555666666665 566999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHH
Q 007365 458 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAEL 519 (606)
Q Consensus 458 T~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~ 519 (606)
||+++|||||+.|.+||||++|.+++.|+||+|||+|+|+.|.+++|+.+.+..+++.+++-
T Consensus 483 TDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 483 TDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred echhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999888877655
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.1e-66 Score=558.29 Aligned_cols=367 Identities=43% Similarity=0.698 Sum_probs=330.9
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcE
Q 007365 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL 222 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~ 222 (606)
+|++++|++.+.+.|...+|.+|||+|+++||.+++++|+|++||||||||++|++|+++.+........ ....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~----~~~~~~ 77 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK----GRRPVR 77 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccc----cCCCce
Confidence 5899999999999999999999999999999999999999999999999999999999998875432111 112357
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEec
Q 007365 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 302 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDE 302 (606)
+|||+||++||.|+.+.++.+....++++..++|+.+...++..+...++|+|+||++|++++....+.++++++|||||
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999999988889999999999999988888888899999999999999988888899999999999
Q ss_pred ccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhh
Q 007365 303 ADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKR 382 (606)
Q Consensus 303 ah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~ 382 (606)
||+|++++|...++.++..+ +..+|+++||||++.++..++..++.++..+.+.........+.+.+.++....|.
T Consensus 158 ah~ll~~~~~~~i~~il~~l----~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 233 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKL----PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR 233 (456)
T ss_pred HHHHhccccHHHHHHHHHhC----CccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH
Confidence 99999999999999999888 67889999999999999999999999998887766666667788888887776666
Q ss_pred hHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccc
Q 007365 383 SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAA 462 (606)
Q Consensus 383 ~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~ 462 (606)
..+..++.. ....++||||+++..++.|++.|...++.+..+|++|++.+|..+++.|++|+++|||||++++
T Consensus 234 ~~l~~l~~~-------~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~ 306 (456)
T PRK10590 234 ELLSQMIGK-------GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA 306 (456)
T ss_pred HHHHHHHHc-------CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHh
Confidence 555554432 1256799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhc
Q 007365 463 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESN 524 (606)
Q Consensus 463 ~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~ 524 (606)
+|||||+|++|||||+|.++++|+||+|||||+|..|.|++|++.++...++.+.+.+....
T Consensus 307 rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred cCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999988888888776543
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=5.2e-67 Score=526.19 Aligned_cols=362 Identities=36% Similarity=0.545 Sum_probs=333.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
...|++..|++..+++|+.++|.++|++|+.+|+.++.++|+++.|.||+|||+||++|+++.+.+.+...+ .+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r------~~ 154 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR------NG 154 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC------CC
Confidence 456889999999999999999999999999999999999999999999999999999999999998765543 44
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcC-CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc-cccceeEE
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYL 298 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~-~l~~~~~l 298 (606)
..+||||||||||.|++.+++++.+.. .+.+.++.||+....+...+.++|+|+|||||||+++|++..- ...+++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 569999999999999999999998776 8999999999999999999999999999999999999998653 56677899
Q ss_pred EEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc-CcEEEEecccc--CccCceeEEEEE
Q 007365 299 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA-NYVFLAVGRVG--SSTDLIVQRVEY 375 (606)
Q Consensus 299 VlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~-~~~~~~~~~~~--~~~~~i~~~~~~ 375 (606)
|+||||+++++||+.+++.|+..+ |..+|+++||||.|.+++.++...|. +++++.+.... ...+.+.|.+..
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~l----pk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv 310 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKIL----PKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVV 310 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhc----cccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEe
Confidence 999999999999999999999999 89999999999999999999998887 47777775544 455778898988
Q ss_pred eccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEE
Q 007365 376 VHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPIL 455 (606)
Q Consensus 376 ~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 455 (606)
++...++..+..+|+.... ..++||||+|...+..+++.|+...++|..|||.++|..|..+..+|++.+.-||
T Consensus 311 ~~~~~~f~ll~~~LKk~~~------~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL 384 (543)
T KOG0342|consen 311 APSDSRFSLLYTFLKKNIK------RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGIL 384 (543)
T ss_pred ccccchHHHHHHHHHHhcC------CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceE
Confidence 8888888899999988752 3789999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHH
Q 007365 456 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAE 518 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~ 518 (606)
|||||++||+|+|+|++||+||+|.++++||||+|||+|.|..|.+++|+.+.+..+++.|.+
T Consensus 385 ~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 385 VCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred EecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999988888764
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.7e-64 Score=552.73 Aligned_cols=370 Identities=38% Similarity=0.586 Sum_probs=327.1
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
.+|++++|++.+++.|...+|.+|||+|+++||.+++++|++++||||||||++|++|+++.++....... .....+
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~---~~~~~~ 85 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALAD---RKPEDP 85 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccc---cccCCc
Confidence 36999999999999999999999999999999999999999999999999999999999998875432110 112347
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc-cccccceeEEEE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLAL 300 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~-~~~l~~~~~lVl 300 (606)
++|||+||++||.|+++.+.+|....++++..++|+.....+...+..+++|||+||++|++++.+. .+.+..+++|||
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 8999999999999999999999988899999999999988888888888999999999999999775 467899999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
||||+|++++|...+..|+..+.. ...+|+++||||++..+..+...++.++..+.+.........+.+.+.......
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~--~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~ 243 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPE--RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEE 243 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhccc--ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHH
Confidence 999999999999999999988721 126799999999999999999999988776666555555566777777777777
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
|...++.++... ...++||||++++.|+.|++.|...++.+..||++|++.+|+.+++.|++|+++|||||++
T Consensus 244 k~~~L~~ll~~~-------~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv 316 (572)
T PRK04537 244 KQTLLLGLLSRS-------EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV 316 (572)
T ss_pred HHHHHHHHHhcc-------cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh
Confidence 777766666432 2567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHh
Q 007365 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQES 523 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~ 523 (606)
+++|||||+|++|||||+|.++++|+||+||+||.|++|.|++|+++.+...+.++.+.+...
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999998888878777766543
No 16
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-66 Score=560.34 Aligned_cols=417 Identities=41% Similarity=0.693 Sum_probs=382.4
Q ss_pred cccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhc
Q 007365 130 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQY 209 (606)
Q Consensus 130 v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~ 209 (606)
+++.+..+|.|+.+|.+.+++..++..+++++|.+|||||.+|||+|+.|+|+|.+|.||||||++|++|++.+++.+..
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 66788899999999999999999999999999999999999999999999999999999999999999999977776543
Q ss_pred ccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcc
Q 007365 210 VQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR 289 (606)
Q Consensus 210 ~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~ 289 (606)
. ....+|.+|||+|||+|+.||++++++|+..++++++++||+..+.+++..+.+++.|+||||+++++++-...
T Consensus 433 ~-----~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~ 507 (997)
T KOG0334|consen 433 L-----EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANS 507 (997)
T ss_pred h-----hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcC
Confidence 3 34568999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred c---cccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCcc
Q 007365 290 V---SLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSST 366 (606)
Q Consensus 290 ~---~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~ 366 (606)
- +|.++.+||+||||+|++++|+|++..|++.+ ++.+|+++||||||..+..++...+..|+.+.++.....+
T Consensus 508 grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl----rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~ 583 (997)
T KOG0334|consen 508 GRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL----RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVC 583 (997)
T ss_pred CccccccccceeeechhhhhheeccCcccchHHhhc----chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEe
Confidence 3 56677799999999999999999999999999 7899999999999999999999999999999998888888
Q ss_pred CceeEEEEEec-cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHH
Q 007365 367 DLIVQRVEYVH-ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALR 445 (606)
Q Consensus 367 ~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 445 (606)
..+.|.+.++. +.+|+..|+++|.+... ..++||||.....|+.|.+.|...+++|..|||+.+|.+|+.+++
T Consensus 584 k~V~q~v~V~~~e~eKf~kL~eLl~e~~e------~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~ 657 (997)
T KOG0334|consen 584 KEVTQVVRVCAIENEKFLKLLELLGERYE------DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIE 657 (997)
T ss_pred ccceEEEEEecCchHHHHHHHHHHHHHhh------cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHH
Confidence 99999999998 89999999999998864 667999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcC
Q 007365 446 SFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQ 525 (606)
Q Consensus 446 ~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q 525 (606)
.|+++.+.+||||+++++|||++++..|||||+|...++|+||.|||||+|++|.|++|+++.+..++.+|.+.|....+
T Consensus 658 dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~ 737 (997)
T KOG0334|consen 658 DFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQ 737 (997)
T ss_pred HHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhcc--CCCCCCCCCCCCCCCCcccccC
Q 007365 526 EVPAWLTRYASRAN--YGGGKNKRSGGNRFGGRDFRRD 561 (606)
Q Consensus 526 ~vp~~L~~~~~~~~--~~~~~~~~~~~~~~gg~~~~~~ 561 (606)
.+|..|+.+..+-- ...++....++|+|||.+++.+
T Consensus 738 ~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~~~~ 775 (997)
T KOG0334|consen 738 PVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKFD 775 (997)
T ss_pred CCchHHHHHHHHHHhhhhcccccccccCcccCCccccc
Confidence 99999999886521 1112222334446888777663
No 17
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-66 Score=497.71 Aligned_cols=370 Identities=35% Similarity=0.504 Sum_probs=336.9
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
...|..++|++++.+.++.+++.+|||+|+.+||.|++|+|+|-+|.||||||++|.+|+++++.+. ..+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed----------P~g 75 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED----------PYG 75 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC----------CCc
Confidence 3569999999999999999999999999999999999999999999999999999999999998765 345
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc----ccccccee
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIR 296 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~----~~~l~~~~ 296 (606)
-++||++||||||.|+++.+..+....++++.+++||.+.-.|...|.+.++|||+|||+|.+++... ...+++++
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 67999999999999999999999999999999999999999999999999999999999999999775 23688999
Q ss_pred EEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcC--cEEEEeccccCccCceeEEEE
Q 007365 297 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLAN--YVFLAVGRVGSSTDLIVQRVE 374 (606)
Q Consensus 297 ~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~--~~~~~~~~~~~~~~~i~~~~~ 374 (606)
++|+||||+|++..|.+.++.+++.+ |..+|+++||||+.+.+..+..--... ..+.......+..+.+.|.|+
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~l----P~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECL----PKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccC----CCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 99999999999999999999999888 778999999999999988877655443 344455555667788899999
Q ss_pred EeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcE
Q 007365 375 YVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPI 454 (606)
Q Consensus 375 ~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~i 454 (606)
.++...|...+..+|.....+ ....++||+++..+|+.|...|+...+.+..+|+.|+|.+|...|.+|+++..+|
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~~----~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~i 307 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFENK----ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARI 307 (442)
T ss_pred ecchhhhHHHHHHHHhhhhhc----cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccE
Confidence 999999999999999887643 3667999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCccc
Q 007365 455 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVP 528 (606)
Q Consensus 455 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp 528 (606)
||||||++||||||.|+.|||||.|.++.+|+||+||++|+|+.|.++.|+++.|.+++..+.+.+.+...|.+
T Consensus 308 liaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 308 LIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred EEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999888877766555443
No 18
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-64 Score=539.90 Aligned_cols=375 Identities=37% Similarity=0.560 Sum_probs=334.5
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
..+|++++|++.+.+.|...+|..|||+|+++||.++.++|++++||||||||++|++|+++.++...... ......
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~---~~~~~~ 83 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE---DRKVNQ 83 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc---ccccCC
Confidence 35799999999999999999999999999999999999999999999999999999999999987653221 111345
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
|++|||+||++||.|+++++..+....++++..++|+.....+...+..+++|||+||++|.+++....+.++++++|||
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 78999999999999999999999988899999999999988888888888999999999999999988889999999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
||||+|++++|..++..++..+.. ...+++++||||++..+..++..++.++.++.+.........+.+.+.+.....
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~--~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~ 241 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPP--ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEE 241 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCC--ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHH
Confidence 999999999999999999988721 245788999999999999999999999988887766666667777777776677
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
|...+.+++... ...++||||++++.|+.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||++
T Consensus 242 k~~~l~~ll~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv 314 (423)
T PRK04837 242 KMRLLQTLIEEE-------WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDV 314 (423)
T ss_pred HHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEech
Confidence 777777666542 2567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcc
Q 007365 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEV 527 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~v 527 (606)
+++|||||+|++|||||+|.++++|+||+||+||.|+.|.|++|+++.+...+..+.+.+.....+.
T Consensus 315 ~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 315 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999999999999999999999999999999988888888877766554433
No 19
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-64 Score=511.34 Aligned_cols=371 Identities=33% Similarity=0.523 Sum_probs=327.5
Q ss_pred CCCccccCCCCHHHHHHHH-hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcc
Q 007365 140 PVNTFAEIDLGEELNLNIR-RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGART 218 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~-~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 218 (606)
.-..|..++|++.+..+|+ .+++..||.+|+++||.+++++|++|.++||||||++|++|+++.+..... ...|.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~----ki~Rs 209 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP----KIQRS 209 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc----ccccc
Confidence 3457999999999999997 568999999999999999999999999999999999999999999987643 34578
Q ss_pred cCcEEEEEccchHHHHHHHHHHHHhhhc-CCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcc-cccccee
Q 007365 219 VYPLALILAPTRELSSQIHDEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIR 296 (606)
Q Consensus 219 ~~p~~Lil~Ptr~La~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~-~~l~~~~ 296 (606)
.++.+|||+||||||.|+++.+.++.+. ..+-.+++.||...+.+...|++|++|||+|||||+|+|.+.+ +.++.++
T Consensus 210 ~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 210 DGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred CCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeee
Confidence 8999999999999999999999999754 4567788899999999999999999999999999999998864 5788999
Q ss_pred EEEEecccccccCCCHHHHHHHHHhcCC---------CCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccc-----
Q 007365 297 YLALDEADRMLDMGFEPQIRKIVQQMDM---------PPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRV----- 362 (606)
Q Consensus 297 ~lVlDEah~~~~~gf~~~i~~i~~~l~~---------~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~----- 362 (606)
||||||+|+++++||+.+|..|++.+.. ..|..+|.+++|||+...+..++..-|.||++|..+..
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 9999999999999999999999988832 12345799999999999999999999999999882211
Q ss_pred --------------------cCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHH
Q 007365 363 --------------------GSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLY 422 (606)
Q Consensus 363 --------------------~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~ 422 (606)
....+.+.|.|.+|+..-.+..|..+|........ ..++|||+.+.+.+++.++.|.
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~---~qk~iVF~S~~d~VeFHy~lf~ 446 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEE---KQKMIVFFSCSDSVEFHYSLFS 446 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhh---hceeEEEEechhHHHHHHHHHH
Confidence 12234567889999999999999999888775543 5689999999999999999875
Q ss_pred hC----------------------CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCC
Q 007365 423 MN----------------------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN 480 (606)
Q Consensus 423 ~~----------------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~ 480 (606)
.. +.++..+||+|+|++|..+++.|......||+||||++||||+|+|.+||+||+|.
T Consensus 447 ~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~ 526 (708)
T KOG0348|consen 447 EALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPF 526 (708)
T ss_pred hhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCC
Confidence 31 35577899999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHH
Q 007365 481 DIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLA 517 (606)
Q Consensus 481 s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~ 517 (606)
+.++|+||||||+|+|.+|.+++|+.+.+.++++.|.
T Consensus 527 s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~ 563 (708)
T KOG0348|consen 527 STADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLK 563 (708)
T ss_pred CHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHH
Confidence 9999999999999999999999999999888777654
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.2e-63 Score=549.39 Aligned_cols=356 Identities=40% Similarity=0.631 Sum_probs=324.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
.+|.+++|++.++++|..++|.+|||+|+++||.+++++|+|++||||||||++|++|+++.+... ...|
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----------~~~~ 75 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----------LKAP 75 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----------cCCC
Confidence 469999999999999999999999999999999999999999999999999999999999887532 1236
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhc-CCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
++|||+||++||.|+++++++|... .+++++.++++.+...+.+.+..+++|||+||++|++++.+..+.++++++|||
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 7999999999999999999998754 478999999999999999999889999999999999999998889999999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
||||+|++++|...+..|+..+ +..+|+++||||+|..+..+++.|+.++..+.+.........+.+.+..+....
T Consensus 156 DEAd~ml~~gf~~di~~Il~~l----p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~ 231 (629)
T PRK11634 156 DEADEMLRMGFIEDVETIMAQI----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR 231 (629)
T ss_pred ccHHHHhhcccHHHHHHHHHhC----CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhh
Confidence 9999999999999999999988 778999999999999999999999999988877766666677888888888778
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
|...|..+|... ...++||||+++..++.|++.|...++.+..+|++|++.+|+++++.|++|+++|||||++
T Consensus 232 k~~~L~~~L~~~-------~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv 304 (629)
T PRK11634 232 KNEALVRFLEAE-------DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 (629)
T ss_pred HHHHHHHHHHhc-------CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcch
Confidence 888877777543 2457999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHH
Q 007365 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAE 518 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~ 518 (606)
+++|||||+|++|||||+|.++++|+||+|||||+|+.|.|++|+++.+...++.+.+
T Consensus 305 ~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776555555433
No 21
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-65 Score=488.64 Aligned_cols=370 Identities=31% Similarity=0.537 Sum_probs=347.1
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
-+.|+++.|..+|+..+...+|.+|.|+|+++||.++.|+|+++.|..|+|||.+|++|++..+...+ ..
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~----------~~ 153 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK----------NV 153 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc----------cc
Confidence 35699999999999999999999999999999999999999999999999999999999998875443 23
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
..++|++||||||.|+...++.+++..++++.+.+||++....+-.+...++++|+||+|++++.+++-..++++.++|+
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~ 233 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVM 233 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEe
Confidence 46999999999999999999999999999999999999999888888889999999999999999998889999999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
||||.|++..|.+.+++++..+ |..+|++++|||||-.+..+...+|.+|..+.+- .+.....+.|+|.++.+..
T Consensus 234 DEADKlLs~~F~~~~e~li~~l----P~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~q 308 (459)
T KOG0326|consen 234 DEADKLLSVDFQPIVEKLISFL----PKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQ 308 (459)
T ss_pred chhhhhhchhhhhHHHHHHHhC----CccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhh
Confidence 9999999999999999999999 9999999999999999999999999999888764 3456678999999999999
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
|...|..++.... -...|||||+...++.|++.+.+.|+.|..+|+.|.|+.|..++.+|++|.++.|||||.
T Consensus 309 KvhCLntLfskLq-------INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 309 KVHCLNTLFSKLQ-------INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred hhhhHHHHHHHhc-------ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 9999998887765 445899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHHHH
Q 007365 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLT 532 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L~ 532 (606)
+.|||||+.|++|||||+|.+.++|+|||||.||.|..|.|+.|++.+|...+.++.+-|.+..+.+|..+.
T Consensus 382 ~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999998998887654
No 22
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-63 Score=496.61 Aligned_cols=356 Identities=36% Similarity=0.542 Sum_probs=319.1
Q ss_pred ccccCC--CCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 143 TFAEID--LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 143 ~f~~~~--l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
.|+++. |++++++.+...+|.++||+|..+||.++.++|+++.|+||||||+||++|++..+.+.....++. .
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-----~ 79 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-----Q 79 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-----c
Confidence 455554 669999999999999999999999999999999999999999999999999999887654333221 2
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhc-CCcEEEEEECCCChHHHHHHHh-cCCcEEEecHHHHHHHHHhcc--cccccee
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQ-TGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERAR--VSLQMIR 296 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~Tp~~L~~~l~~~~--~~l~~~~ 296 (606)
.-+|||+||||||.||.+.+..|... ..+++.+++||.+..+.+..+. ++++|+|+|||||.+++.+.. +++.+++
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 35999999999999999999999755 7889999999999998888775 478999999999999998854 3556999
Q ss_pred EEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccC--ccCceeEEEE
Q 007365 297 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGS--STDLIVQRVE 374 (606)
Q Consensus 297 ~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~--~~~~i~~~~~ 374 (606)
+|||||||++++|||+..+..|+..| |..+++-+||||...++..+....|.|++.+.+..... ....+...|.
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~L----PKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFL----PKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhc----ccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceee
Confidence 99999999999999999999999999 89999999999999999999999999999999877665 5556777888
Q ss_pred EeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhccCCCC
Q 007365 375 YVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 375 ~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
.+....|...|+++|... +..++|||.+|+..+++....|... .+.+..+||.|.+.+|..++..|.+-.-
T Consensus 236 v~~a~eK~~~lv~~L~~~-------~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~ 308 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNN-------KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN 308 (567)
T ss_pred EecHHHHHHHHHHHHhcc-------ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC
Confidence 999999999999999864 3778999999999999999988664 6788999999999999999999999888
Q ss_pred cEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHH
Q 007365 453 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLAR 514 (606)
Q Consensus 453 ~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~ 514 (606)
.+|+||||++||||||+|++||+||+|.+++.|+||+|||+|+|+.|.|++|+.+.+..++.
T Consensus 309 ~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 309 GVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred ceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999996655443
No 23
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-62 Score=532.96 Aligned_cols=360 Identities=38% Similarity=0.606 Sum_probs=327.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
.+|++++|++.+.+.|...+|.+|||+|++|||.++.++|++++||||||||++|++|+++.+.... ..+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----------~~~ 73 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----------FRV 73 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc----------CCc
Confidence 4699999999999999999999999999999999999999999999999999999999998875321 235
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcC-CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
++||++||++||.|++++++.+.... ++++..++|+.+...+...+..+++|+|+||++|.+++.+..+.++++++|||
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVL 153 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEE
Confidence 69999999999999999999987543 78999999999999999999999999999999999999988888999999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
||||+|++++|...+..++..+ +..+|+++||||+|..+..++..++.++..+.+.... ....+.+.+..+....
T Consensus 154 DEad~~l~~g~~~~l~~i~~~~----~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~ 228 (460)
T PRK11776 154 DEADRMLDMGFQDAIDAIIRQA----PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE 228 (460)
T ss_pred ECHHHHhCcCcHHHHHHHHHhC----CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH
Confidence 9999999999999999999988 7789999999999999999999999999887775543 3455778888888777
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
|...+..++... ...++||||++++.++.+++.|...++.+..+||+|++.+|+.+++.|++|+.+|||||++
T Consensus 229 k~~~l~~ll~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv 301 (460)
T PRK11776 229 RLPALQRLLLHH-------QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDV 301 (460)
T ss_pred HHHHHHHHHHhc-------CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecc
Confidence 887777777543 2567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHh
Q 007365 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQES 523 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~ 523 (606)
+++|||||++++||+||+|.+.++|+||+|||||+|+.|.|++|+++.+...++.+.+.+...
T Consensus 302 ~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~ 364 (460)
T PRK11776 302 AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRK 364 (460)
T ss_pred cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999888877777776543
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-63 Score=505.44 Aligned_cols=358 Identities=33% Similarity=0.548 Sum_probs=329.0
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
+..|++++|+...++.|+..+|..||.+|+.+||..++|+|+|..|.||||||+||++|+|.++...++.. ..+
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~------~DG 141 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP------TDG 141 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC------CCC
Confidence 44699999999999999999999999999999999999999999999999999999999999999887643 344
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcc-ccccceeEEE
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYLA 299 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~-~~l~~~~~lV 299 (606)
.=||||+||||||.|+++.+.+......+.+.+++||.....+...+. .++|||||||||+.++.... ++..++.+||
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 559999999999999999999999999999999999999777766554 58999999999999997654 5788999999
Q ss_pred EecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEecc--ccCccCceeEEEEEec
Q 007365 300 LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGR--VGSSTDLIVQRVEYVH 377 (606)
Q Consensus 300 lDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~--~~~~~~~i~~~~~~~~ 377 (606)
|||||+|+||||...+..|++.+ |..+|+++||||....+..+++..|.+|.++.+.. .......+.|.|..++
T Consensus 221 LDEADR~LDMGFk~tL~~Ii~~l----P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 221 LDEADRMLDMGFKKTLNAIIENL----PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred eccHHHHHHHhHHHHHHHHHHhC----ChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe
Confidence 99999999999999999999999 99999999999999999999999999999988863 3456778999999999
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhccCCCCcEE
Q 007365 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPIL 455 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 455 (606)
..+|...|..++...+ ..++|||+.|++++.+++..++.. |+++..+||.|+|..|.+++..|...+.-||
T Consensus 297 l~~Ki~~L~sFI~shl-------k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vL 369 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHL-------KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVL 369 (758)
T ss_pred hhhHHHHHHHHHHhcc-------ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEE
Confidence 9999999999998876 667999999999999999999865 8899999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCC-hhhHHHH
Q 007365 456 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN-LSLARPL 516 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~-~~~~~~l 516 (606)
+|||+++||||+|.|++||++|.|.++++||||+||++|....|.|++++++.+ ..++..|
T Consensus 370 F~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 370 FCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred EeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999877 4444444
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.6e-60 Score=513.57 Aligned_cols=364 Identities=36% Similarity=0.581 Sum_probs=323.5
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcE
Q 007365 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL 222 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~ 222 (606)
+|++++|++.+++.+...+|.+|+++|+++|+.++.++|+|++||||+|||++|++|++++++..... ....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~------~~~~~~ 75 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR------KSGPPR 75 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc------CCCCce
Confidence 59999999999999999999999999999999999999999999999999999999999988753211 122367
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEec
Q 007365 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 302 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDE 302 (606)
+|||+||++||.|+++.+..+....++++..++|+.....+...+...++|||+||++|++++....+.+.++++|||||
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999998889999999999998888888888899999999999999998888899999999999
Q ss_pred ccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChH-HHHHHHHHhhcCcEEEEeccccCccCceeEEEEEecc-ch
Q 007365 303 ADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPK-EIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHE-SD 380 (606)
Q Consensus 303 ah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~-~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 380 (606)
||+|++++|...+..+...+ +..+|+++||||++. .+..+...++.+++.+.+.........+.+.+..+.. ..
T Consensus 156 ah~~l~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 231 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAET----RWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEH 231 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhC----ccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHH
Confidence 99999999999999998887 567899999999975 5788888888888888776666666667776665543 34
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
|...+..++.. ....++||||++++.++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||++
T Consensus 232 k~~~l~~l~~~-------~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~ 304 (434)
T PRK11192 232 KTALLCHLLKQ-------PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDV 304 (434)
T ss_pred HHHHHHHHHhc-------CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 44444444432 12578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHh
Q 007365 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQES 523 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~ 523 (606)
+++|||||+|++|||||+|.+.+.|+||+|||||+|.+|.+++|++..|...+..+.+++.+.
T Consensus 305 ~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 305 AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999988888888776654
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-59 Score=507.07 Aligned_cols=382 Identities=40% Similarity=0.598 Sum_probs=334.7
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCccc
Q 007365 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTV 219 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 219 (606)
....|.+++|++.|.+.|...+|..||++|+++|+.+++++|+|++++||||||++|++|+++.+.+...... ....
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~---~~~~ 161 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE---RYMG 161 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccc---cccC
Confidence 3457899999999999999999999999999999999999999999999999999999999999876432110 0112
Q ss_pred CcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhc-CCcEEEecHHHHHHHHHhccccccceeEE
Q 007365 220 YPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYL 298 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~l 298 (606)
.+++|||+||++||.|+++.++.+....++++..++|+.+...+.+.+.. .++|||+||++|++++.+....++++++|
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~l 241 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVM 241 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceE
Confidence 46899999999999999999999988889999999999888888777754 58999999999999998888889999999
Q ss_pred EEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEecc
Q 007365 299 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHE 378 (606)
Q Consensus 299 VlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 378 (606)
||||||++++++|.+.+..|+..+.. ...+|+++||||++.++..+++.++.++..+.+.........+.+.+..+..
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~--~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 319 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPR--KEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG 319 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCC--CCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc
Confidence 99999999999999999999987731 2357999999999999999999999998887776666666667777777777
Q ss_pred chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc
Q 007365 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT 458 (606)
Q Consensus 379 ~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 458 (606)
.+|...+.+++... ...++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+++|||||
T Consensus 320 ~~k~~~l~~ll~~~-------~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT 392 (475)
T PRK01297 320 SDKYKLLYNLVTQN-------PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 392 (475)
T ss_pred hhHHHHHHHHHHhc-------CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 77777776666432 25679999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhc-Cc-ccHHHHH
Q 007365 459 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESN-QE-VPAWLTR 533 (606)
Q Consensus 459 ~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~-q~-vp~~L~~ 533 (606)
+++++|||||+|++||+|++|.++.+|+||+||+||.|+.|.+++|++++|...+..+.+++.... .+ .|..|..
T Consensus 393 ~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 393 DVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 999999999999999999999999999999999999999999999999998888888888877654 34 4445444
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-60 Score=468.05 Aligned_cols=367 Identities=31% Similarity=0.476 Sum_probs=328.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
.+|++++|++.|++++.++++.+||-+|..|||.+++++|+++.|.||||||+||++|+++.++..+... ....+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~----~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN----DGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc----cccccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999876542 345688
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcC--CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcc-ccccceeEE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQT--GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYL 298 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~-~~l~~~~~l 298 (606)
.++||+||+|||.|++..+.++.... .++++-+....+.......|...++|+|+||++|+.++..+. ..+..+++|
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 99999999999999999999875432 456666665555455556677789999999999999999887 578899999
Q ss_pred EEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCc-cCceeEEEEEec
Q 007365 299 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSS-TDLIVQRVEYVH 377 (606)
Q Consensus 299 VlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~ 377 (606)
|+||||.++..||++++.++...+ |...|.+|||||+..+++.+.+.++.+|+.+.+...+.. .+.+.|.+..+.
T Consensus 175 VvDEADLllsfGYeedlk~l~~~L----Pr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHL----PRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS 250 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhC----CchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec
Confidence 999999999999999999999999 888999999999999999999999999999888766554 456788889999
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEE
Q 007365 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 457 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 457 (606)
+.+|+..++.+++-.+. .+++|||+|+.+.|..|.-+|...|++...++|.|+...|..+++.|..|-++||||
T Consensus 251 e~DKflllyallKL~LI------~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIA 324 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLI------RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIA 324 (569)
T ss_pred cchhHHHHHHHHHHHHh------cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEE
Confidence 99999999999887664 577999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-----------------------------------cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEE
Q 007365 458 TDV-----------------------------------AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLAT 502 (606)
Q Consensus 458 T~v-----------------------------------~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~ 502 (606)
||. .+||||+.+|.+|||||+|.+...||||+|||+|++++|.++
T Consensus 325 tD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gtal 404 (569)
T KOG0346|consen 325 TDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTAL 404 (569)
T ss_pred ccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceE
Confidence 992 679999999999999999999999999999999999999999
Q ss_pred EEeccCChhhHHHHHHHHHH
Q 007365 503 AFFNENNLSLARPLAELMQE 522 (606)
Q Consensus 503 ~~~~~~~~~~~~~l~~~l~~ 522 (606)
+|+.+.+..-...|..++..
T Consensus 405 Sfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 405 SFVSPKEEFGKESLESILKD 424 (569)
T ss_pred EEecchHHhhhhHHHHHHhh
Confidence 99998777655555555544
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-60 Score=477.88 Aligned_cols=376 Identities=30% Similarity=0.489 Sum_probs=314.0
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhhhcccC---CC
Q 007365 139 PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQR---PR 214 (606)
Q Consensus 139 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~-~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~---~~ 214 (606)
..+..|..|.++..++.+|..++|..||++|.-+||++..+ .|+|..|.||||||+||-+||++.+........ ..
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34567999999999999999999999999999999999998 899999999999999999999996654322110 01
Q ss_pred CCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc---c
Q 007365 215 GARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV---S 291 (606)
Q Consensus 215 ~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~---~ 291 (606)
..+...|.+||++||||||.|+.+.+..++..+++++..++||.....|.+.|.+.++|+|||||||+.+++.... +
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 1123334599999999999999999999999999999999999999999999999999999999999999977543 6
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcC-CCCCCCceEEEEeccChHH---------------------HHHHHHH
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMD-MPPPGVRQTMLFSATFPKE---------------------IQKLASD 349 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~-~~~~~~~q~ll~SAT~~~~---------------------i~~l~~~ 349 (606)
++++++|||||+|||++.|...++.+|++.|. ......+|++.||||+.-. ++.+++.
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 78899999999999999999999999999986 3334578999999997532 2223322
Q ss_pred h--hcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCC
Q 007365 350 F--LANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFP 427 (606)
Q Consensus 350 ~--l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~ 427 (606)
. ...+.++.+.........+....+.|+..+|.-.|+.+|..+ .+++|||||+++.+..|.-+|+..+++
T Consensus 418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--------PGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--------PGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred hCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--------CCceEEEechHHHHHHHHHHHhhcCCC
Confidence 1 123455555444444444444444444444444444444332 678999999999999999999999999
Q ss_pred cEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEecc
Q 007365 428 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 428 ~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
...||+.|.|.+|-..|++|+.....||||||||+||||||.|.|||||-.|.+.+.|+||.|||+|++..|..++|+.+
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P 569 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGP 569 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHH
Q 007365 508 NNLSLARPLAELMQE 522 (606)
Q Consensus 508 ~~~~~~~~l~~~l~~ 522 (606)
.+...+..|.+-|+.
T Consensus 570 ~e~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 570 QEVGPLKKLCKTLKK 584 (731)
T ss_pred HHhHHHHHHHHHHhh
Confidence 988888888777665
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.5e-57 Score=482.81 Aligned_cols=369 Identities=32% Similarity=0.537 Sum_probs=323.3
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
..+|+++++++.+.+++...+|..|+|+|.++|+.++.++|++++||||||||++|++|++..+... ...
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----------~~~ 96 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----------LNA 96 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----------CCC
Confidence 4679999999999999999999999999999999999999999999999999999999999876422 123
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
+++|||+||++|+.|+.+.+..+.....+.+..++|+.....+...+..+++|+|+||++|.+++.+..+.++++++||+
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 46999999999999999999999887788888889998888888888888999999999999999888888999999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEecc-c
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHE-S 379 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 379 (606)
||||++++.+|...+..++..+ +...|++++|||+|.++..+...++.++..+.+.........+.+.+..+.. .
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKL----PPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE 252 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhC----CCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH
Confidence 9999999999998898888877 6778999999999999999999998888776665544455556666555543 2
Q ss_pred hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007365 380 DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 380 ~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
.+...+.+++... ...++||||++++.++.+++.|...++.+..+|++|++.+|..+++.|++|+++|||||+
T Consensus 253 ~~~~~l~~~~~~~-------~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~ 325 (401)
T PTZ00424 253 WKFDTLCDLYETL-------TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD 325 (401)
T ss_pred HHHHHHHHHHHhc-------CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc
Confidence 2444444443321 245799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHH
Q 007365 460 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAW 530 (606)
Q Consensus 460 v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~ 530 (606)
++++|||||++++||+||+|.++.+|+||+||+||.|+.|.|++|+++++...+..+.+.+....+++|..
T Consensus 326 ~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 326 LLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred cccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 99999999999999999999999999999999999999999999999999998888888777666666543
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-57 Score=439.10 Aligned_cols=373 Identities=32% Similarity=0.513 Sum_probs=325.2
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCc
Q 007365 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR 217 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 217 (606)
.+.+|+++.|.++|++.|..++|.+|+.+|+.|+|.++.+ +++|++++.|+|||+||.+.+|.++.-.
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---------- 157 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---------- 157 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----------
Confidence 4678999999999999999999999999999999999987 8999999999999999999999877433
Q ss_pred ccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh-cccccccee
Q 007365 218 TVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMIR 296 (606)
Q Consensus 218 ~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~-~~~~l~~~~ 296 (606)
...|.+++|+||||||.|+-+.+.+..+..++++..+.-+..... -+.+ ..+|+|.||+.+.+++.. ..+.++.++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i--~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcc--hhheeeCCCccHHHHHHHHHhhChhhce
Confidence 345789999999999999999999998888888777766551110 0011 147999999999999988 667899999
Q ss_pred EEEEecccccccC-CCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEE
Q 007365 297 YLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEY 375 (606)
Q Consensus 297 ~lVlDEah~~~~~-gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 375 (606)
.+|+||||.|++. ||.++-..|...+ |...|+|+||||+...+..++..++.++..+.+.+.....+.|.|.+..
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~l----P~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~ 310 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSL----PRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVL 310 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhc----CCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheee
Confidence 9999999999865 6888888888877 7889999999999999999999999999999999999999999999988
Q ss_pred ecc-chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcE
Q 007365 376 VHE-SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPI 454 (606)
Q Consensus 376 ~~~-~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~i 454 (606)
+.. .+|...|.++..... .+..||||.|++.+..|+..|...|+.+..+||+|.-.+|..++++|+.|+.+|
T Consensus 311 C~~~~~K~~~l~~lyg~~t-------igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kV 383 (477)
T KOG0332|consen 311 CACRDDKYQALVNLYGLLT-------IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKV 383 (477)
T ss_pred ccchhhHHHHHHHHHhhhh-------hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceE
Confidence 865 567777777554332 566899999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEecCCC------CHhHHHHHhhccccCCCcceEEEEecc-CChhhHHHHHHHHHH-hcCc
Q 007365 455 LVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNE-NNLSLARPLAELMQE-SNQE 526 (606)
Q Consensus 455 LVaT~v~~~GlDip~v~~VI~~d~p~------s~~~y~QRiGR~gR~g~~G~~~~~~~~-~~~~~~~~l~~~l~~-~~q~ 526 (606)
||+|+|++||||++.|++|||||+|. +.+.|+||||||||.|++|.++.|++. +..+.+..|.++... ..+.
T Consensus 384 LitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 384 LITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRL 463 (477)
T ss_pred EEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceec
Confidence 99999999999999999999999996 789999999999999999999999986 456677788887743 4556
Q ss_pred ccHHHHHHHH
Q 007365 527 VPAWLTRYAS 536 (606)
Q Consensus 527 vp~~L~~~~~ 536 (606)
.|+.+.++.+
T Consensus 464 ~~~d~~E~ek 473 (477)
T KOG0332|consen 464 DPDDLDELEK 473 (477)
T ss_pred CCccHHHHHH
Confidence 6777766643
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-57 Score=444.79 Aligned_cols=371 Identities=35% Similarity=0.575 Sum_probs=345.4
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
+.+|++++|++.|++.+...||.+|+.+|+.||..+..|.|+++++++|+|||.+|++++++.+.... ..
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~----------ke 94 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV----------KE 94 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch----------HH
Confidence 34799999999999999999999999999999999999999999999999999999999998874322 22
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH-hcCCcEEEecHHHHHHHHHhccccccceeEEE
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERARVSLQMIRYLA 299 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lV 299 (606)
+.||+++||||||.|+....+.+....++++..+.||.....+...+ ...++|+|.||+++.+++....+....++++|
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 45999999999999999999999888899999999998877554444 44689999999999999999988888999999
Q ss_pred EecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccc
Q 007365 300 LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHES 379 (606)
Q Consensus 300 lDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 379 (606)
+||+|.|+..+|.++|..|++.+ +.+.|++++|||.|.++..+.+.|+.+++.+.+...+...+.+.|.+..+...
T Consensus 175 lDEaDEmLs~gfkdqI~~if~~l----p~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~ 250 (397)
T KOG0327|consen 175 LDEADEMLSRGFKDQIYDIFQEL----PSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE 250 (397)
T ss_pred ecchHhhhccchHHHHHHHHHHc----CcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc
Confidence 99999999999999999999999 78889999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007365 380 DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 380 ~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
.|...|.++... ....+||||+++.++.|...|...++.+..+|++|.+.+|+.+++.|+.|..+|||+|+
T Consensus 251 ~k~~~l~dl~~~---------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd 321 (397)
T KOG0327|consen 251 EKLDTLCDLYRR---------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD 321 (397)
T ss_pred ccccHHHHHHHh---------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecc
Confidence 999999999882 34479999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHHHHHH
Q 007365 460 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRY 534 (606)
Q Consensus 460 v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L~~~ 534 (606)
.++||||+..+..|||||+|.+.++|+||+||+||.|.+|.++.|+++++...++++.+.+.....|+|....++
T Consensus 322 l~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l 396 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADL 396 (397)
T ss_pred ccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876553
No 32
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-56 Score=461.29 Aligned_cols=394 Identities=33% Similarity=0.515 Sum_probs=348.4
Q ss_pred ccccCCCCCCCCCCccccC----CCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007365 129 PVETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 129 ~v~~~~~~~p~~~~~f~~~----~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
.+.+.|.++|+++.+|.++ .....|++++...+|..|+|+|++|+|.++..+++|+|||||||||++|++|++.++
T Consensus 119 k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L 198 (593)
T KOG0344|consen 119 KINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHL 198 (593)
T ss_pred eeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHH
Confidence 5567899999999999874 578899999999999999999999999999999999999999999999999999998
Q ss_pred HhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh--hcCCcEEEEEECCCChHH-HHHHHhcCCcEEEecHHHH
Q 007365 205 MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS--YQTGVKVVVAYGGAPINQ-QLRELERGVDILVATPGRL 281 (606)
Q Consensus 205 ~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~--~~~~~~~~~~~gg~~~~~-~~~~l~~~~~Ilv~Tp~~L 281 (606)
...... ....+.+++|+.|||+||.|++.++.++. ..+..++..........+ ........++|+|.||-++
T Consensus 199 ~~~~~~-----~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri 273 (593)
T KOG0344|consen 199 KDLSQE-----KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRI 273 (593)
T ss_pred HHhhcc-----cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHH
Confidence 765431 22456789999999999999999999998 555555554433322111 1122233579999999999
Q ss_pred HHHHHhcc--ccccceeEEEEecccccccC-CCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEE
Q 007365 282 VDLLERAR--VSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLA 358 (606)
Q Consensus 282 ~~~l~~~~--~~l~~~~~lVlDEah~~~~~-gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~ 358 (606)
..++.... +.+..|.++|+||+|++++. .|..|+..|+..+.+ ++..+-+||||++.+++++++..+.+.+.+.
T Consensus 274 ~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s---~~i~~a~FSat~~~~VEE~~~~i~~~~~~vi 350 (593)
T KOG0344|consen 274 VGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS---PDIRVALFSATISVYVEEWAELIKSDLKRVI 350 (593)
T ss_pred HHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC---cchhhhhhhccccHHHHHHHHHhhccceeEE
Confidence 99998876 68999999999999999998 899999999999864 5667889999999999999999999999999
Q ss_pred eccccCccCceeEEEEEec-cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHH-HhCCCCcEEeeCccC
Q 007365 359 VGRVGSSTDLIVQRVEYVH-ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWL-YMNGFPATTIHGDRT 436 (606)
Q Consensus 359 ~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L-~~~~~~~~~lhg~~~ 436 (606)
++..++....+.|...++- +..|...+.+++..-+ ..++|||+.+++.|..|+..| ...++.+..|||..+
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-------~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~ 423 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-------KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERS 423 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-------CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccc
Confidence 9999999999998887764 5667777777776653 677999999999999999999 788999999999999
Q ss_pred HHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHH
Q 007365 437 QQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPL 516 (606)
Q Consensus 437 ~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l 516 (606)
+.+|++++++|+.|++.|||||++++||||+.+|+.|||||+|.+...|+|||||+||+|+.|.|++||++.|.++++.+
T Consensus 424 ~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~i 503 (593)
T KOG0344|consen 424 QKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSI 503 (593)
T ss_pred hhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccHHHHHHHHh
Q 007365 517 AELMQESNQEVPAWLTRYASR 537 (606)
Q Consensus 517 ~~~l~~~~q~vp~~L~~~~~~ 537 (606)
.+.++...-+||.|+..+..-
T Consensus 504 ae~~~~sG~evpe~~m~~~k~ 524 (593)
T KOG0344|consen 504 AEVMEQSGCEVPEKIMGIKKL 524 (593)
T ss_pred HHHHHHcCCcchHHHHhhhhh
Confidence 999999999999999998853
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-56 Score=435.88 Aligned_cols=360 Identities=35% Similarity=0.557 Sum_probs=336.4
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
.-.|..++|+..+.++|.+.+|..|||+|++.||.+++++|++..+-||||||.||++|+++++.... ..+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---------~~g 90 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---------QTG 90 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---------ccc
Confidence 34699999999999999999999999999999999999999999999999999999999999887653 234
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
.++||++|||+|+.|..+.++.+...+++++.+++||.+..+|+..+..++|||+|||++++.+.-...+.|+.+.|||+
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 56999999999999999999999999999999999999999999999999999999999999888777788999999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
||+|+++.|||.+++.+++..+ +..+|+++||||+|..+..+++.-+.++..+.++-.....+.....+..+...+
T Consensus 171 dEadrlfemgfqeql~e~l~rl----~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRL----PESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhC----CCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 9999999999999999999999 888899999999999999999999999999998888888888888899999999
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
|...|+.++..... +..++|||.++.+++.+...|+..++.+..+++.|.+.-|..-+.+|..++..+||.||+
T Consensus 247 K~aaLl~il~~~~~------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdv 320 (529)
T KOG0337|consen 247 KEAALLSILGGRIK------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDV 320 (529)
T ss_pred HHHHHHHHHhcccc------ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehh
Confidence 99999998887652 557999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHH
Q 007365 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAEL 519 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~ 519 (606)
++||+|||-.+.|||||+|.+...|+||+||+.|+|++|.+|.|+..++..++-+|...
T Consensus 321 aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 321 AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999998887777666443
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.5e-54 Score=442.94 Aligned_cols=356 Identities=31% Similarity=0.483 Sum_probs=319.5
Q ss_pred CCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccC
Q 007365 133 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 212 (606)
Q Consensus 133 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~ 212 (606)
++...+.....|+++-|...++..|++.+|..||++|..|||+++.+.|+||+|..|+|||++|.+.+++.+..
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------ 89 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------ 89 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------
Confidence 34445556678999999999999999999999999999999999999999999999999999999888876643
Q ss_pred CCCCcccCcEEEEEccchHHHHHHHHHHHHhhh-cCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcccc
Q 007365 213 PRGARTVYPLALILAPTRELSSQIHDEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 291 (606)
Q Consensus 213 ~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~ 291 (606)
+...+.++||+||||+|.||.+.+.+++. ..+.++.+++||+........|.+ |+|+|+|||||..+++.+.++
T Consensus 90 ----~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n 164 (980)
T KOG4284|consen 90 ----RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMN 164 (980)
T ss_pred ----ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCC
Confidence 24567899999999999999999999985 578999999999998877766654 789999999999999999999
Q ss_pred ccceeEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCcee
Q 007365 292 LQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIV 370 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~ 370 (606)
...++++||||||.+++ ..|..+|..|+..+ |..+|++.||||.|..+..++..||.++.++.........-.|.
T Consensus 165 ~s~vrlfVLDEADkL~~t~sfq~~In~ii~sl----P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~Gik 240 (980)
T KOG4284|consen 165 MSHVRLFVLDEADKLMDTESFQDDINIIINSL----PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIK 240 (980)
T ss_pred ccceeEEEeccHHhhhchhhHHHHHHHHHHhc----chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechh
Confidence 99999999999999998 45999999999999 89999999999999999999999999999999888777777888
Q ss_pred EEEEEeccc--------hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHH
Q 007365 371 QRVEYVHES--------DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 442 (606)
Q Consensus 371 ~~~~~~~~~--------~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 442 (606)
|++..+... .|+..|-.++..+. -..+||||+....|+-++.+|...|+.|.+|.|.|+|.+|..
T Consensus 241 Qyv~~~~s~nnsveemrlklq~L~~vf~~ip-------y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~ 313 (980)
T KOG4284|consen 241 QYVVAKCSPNNSVEEMRLKLQKLTHVFKSIP-------YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLL 313 (980)
T ss_pred heeeeccCCcchHHHHHHHHHHHHHHHhhCc-------hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHH
Confidence 888766543 24444444444433 344899999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007365 443 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 443 ~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
+++.++.-.++|||+||..+||||-++|++|||.|.|.+.++|.||||||||.|..|.+++|+.....
T Consensus 314 a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 314 AVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999987554
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5e-52 Score=467.64 Aligned_cols=352 Identities=20% Similarity=0.279 Sum_probs=273.6
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEc
Q 007365 148 DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILA 227 (606)
Q Consensus 148 ~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~ 227 (606)
.+++.+.+.|+..+|.+||++|.++|+.+++++|+++++|||||||++|++|+++.+.+.. .+++|||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-----------~~~aL~l~ 88 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-----------RATALYLA 88 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-----------CcEEEEEc
Confidence 4789999999999999999999999999999999999999999999999999999886532 25699999
Q ss_pred cchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc----cccccceeEEEEecc
Q 007365 228 PTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIRYLALDEA 303 (606)
Q Consensus 228 Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~----~~~l~~~~~lVlDEa 303 (606)
|||+||.|+.+.++++. ..++++.++.|+.+ ..+...+...++|||+||++|...+... ...++++++||||||
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999987 44788877777766 4455566777999999999997543221 124789999999999
Q ss_pred cccccCCCHHHHHHHHHhcCC---CCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEecc--
Q 007365 304 DRMLDMGFEPQIRKIVQQMDM---PPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHE-- 378 (606)
Q Consensus 304 h~~~~~gf~~~i~~i~~~l~~---~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 378 (606)
|+|.+. |...+..++..+.. ..+..+|+++||||+++..+ +++.++..+..+ +.......... +...+.+.
T Consensus 167 h~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~-~~~~~~p~~~ 242 (742)
T TIGR03817 167 HSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGAR-TVALWEPPLT 242 (742)
T ss_pred hhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCce-EEEEecCCcc
Confidence 999764 77776666655421 12456899999999988765 566677666443 33322222222 11111111
Q ss_pred -----------chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC--------CCCcEEeeCccCHHH
Q 007365 379 -----------SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN--------GFPATTIHGDRTQQE 439 (606)
Q Consensus 379 -----------~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~ 439 (606)
........+++...... ..++||||+|++.++.++..|+.. +..+..+|+++++++
T Consensus 243 ~~~~~~~~~~r~~~~~~~~~~l~~l~~~-----~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 243 ELTGENGAPVRRSASAEAADLLADLVAE-----GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred ccccccccccccchHHHHHHHHHHHHHC-----CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 01112233344443322 567999999999999999988653 567889999999999
Q ss_pred HHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccC--ChhhHHHHH
Q 007365 440 RELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN--NLSLARPLA 517 (606)
Q Consensus 440 R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~--~~~~~~~l~ 517 (606)
|.+++++|++|++++||||+++++|||||++++||||++|.++++|+||+|||||.|+.|.++++...+ |..++....
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~ 397 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPE 397 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998643 333444444
Q ss_pred HHHH
Q 007365 518 ELMQ 521 (606)
Q Consensus 518 ~~l~ 521 (606)
++++
T Consensus 398 ~~~~ 401 (742)
T TIGR03817 398 ALFD 401 (742)
T ss_pred HHhc
Confidence 4444
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-52 Score=421.90 Aligned_cols=353 Identities=30% Similarity=0.444 Sum_probs=291.7
Q ss_pred HHHHHHhCCCCCCCHHHHhHHHHHhc---------CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEE
Q 007365 153 LNLNIRRCKYVKPTPVQRHAIPISVA---------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLA 223 (606)
Q Consensus 153 l~~~l~~~~~~~p~~~Q~~ai~~i~~---------~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~ 223 (606)
+.+++.++++..+.|+|..++|+++. .+|+.+.||||||||++|.+||++.+..... ...++
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v---------~~LRa 218 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV---------KRLRA 218 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc---------cceEE
Confidence 44558899999999999999999854 4899999999999999999999988765431 12579
Q ss_pred EEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcC-----CcEEEecHHHHHHHHHh-ccccccceeE
Q 007365 224 LILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERG-----VDILVATPGRLVDLLER-ARVSLQMIRY 297 (606)
Q Consensus 224 Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~~Ilv~Tp~~L~~~l~~-~~~~l~~~~~ 297 (606)
|||+||++|+.|+++++.+++..+++.|+.+.|..+...+.+.|... .||||+||+||.++|.+ ..++|++++|
T Consensus 219 vVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lrf 298 (620)
T KOG0350|consen 219 VVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRF 298 (620)
T ss_pred EEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceE
Confidence 99999999999999999999999999999999999988888887643 48999999999999985 5679999999
Q ss_pred EEEecccccccCCCHHHHHHHHHhcCCC------------------------------CCCCceEEEEeccChHHHHHHH
Q 007365 298 LALDEADRMLDMGFEPQIRKIVQQMDMP------------------------------PPGVRQTMLFSATFPKEIQKLA 347 (606)
Q Consensus 298 lVlDEah~~~~~gf~~~i~~i~~~l~~~------------------------------~~~~~q~ll~SAT~~~~i~~l~ 347 (606)
+|+||||||++..|..-+..+...+..+ ..+..+.+.||||+..+-..+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 9999999999987776666655554322 1234467889999977766777
Q ss_pred HHhhcCc-EEEEec---cccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHH-
Q 007365 348 SDFLANY-VFLAVG---RVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLY- 422 (606)
Q Consensus 348 ~~~l~~~-~~~~~~---~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~- 422 (606)
..-+..| .+.... .....+..+.+....+....|...+..++.... ..++|+|+++...+..|+..|+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k-------~~r~lcf~~S~~sa~Rl~~~L~v 451 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK-------LNRTLCFVNSVSSANRLAHVLKV 451 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh-------cceEEEEecchHHHHHHHHHHHH
Confidence 7667766 333332 222344455555556666667777777776653 6679999999999999999886
Q ss_pred ---hCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcc
Q 007365 423 ---MNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 499 (606)
Q Consensus 423 ---~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G 499 (606)
...+++..+.|.+++..|.+.++.|..|.++||||+|+++||||+.+|+.|||||+|.+...|+||+|||+|+|+.|
T Consensus 452 ~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G 531 (620)
T KOG0350|consen 452 EFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG 531 (620)
T ss_pred HhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc
Confidence 44677778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCChhhHHHHHHHHH
Q 007365 500 LATAFFNENNLSLARPLAELMQ 521 (606)
Q Consensus 500 ~~~~~~~~~~~~~~~~l~~~l~ 521 (606)
.|+++++..+.....++.+...
T Consensus 532 ~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 532 YAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred eEEEeeccccchHHHHHHHHhc
Confidence 9999999988877666655433
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.5e-49 Score=438.99 Aligned_cols=339 Identities=18% Similarity=0.285 Sum_probs=261.3
Q ss_pred CCCCHHHHHHHH-hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEE
Q 007365 147 IDLGEELNLNIR-RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALI 225 (606)
Q Consensus 147 ~~l~~~l~~~l~-~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Li 225 (606)
++....+...++ .++|..++|+|+++|+.++.++|+|+++|||+|||++|++|++.. ...+||
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----------------~GiTLV 505 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----------------PGITLV 505 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------------CCcEEE
Confidence 455566666555 468999999999999999999999999999999999999999842 124999
Q ss_pred EccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHh------cCCcEEEecHHHHHH--HHHhcc--c-cccc
Q 007365 226 LAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELE------RGVDILVATPGRLVD--LLERAR--V-SLQM 294 (606)
Q Consensus 226 l~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~Ilv~Tp~~L~~--~l~~~~--~-~l~~ 294 (606)
|+|+++|+.++...+.. .++++..+.++....++...+. ..++|||+||++|.. .+.+.. + ....
T Consensus 506 ISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 506 ISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred EeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999999865555554 3788999999888776655443 357999999999862 222111 1 2345
Q ss_pred eeEEEEecccccccCC--CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc--CcEEEEeccccCccCcee
Q 007365 295 IRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA--NYVFLAVGRVGSSTDLIV 370 (606)
Q Consensus 295 ~~~lVlDEah~~~~~g--f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~--~~~~~~~~~~~~~~~~i~ 370 (606)
+.+|||||||++++|| |++.+..+-..... .+..++++||||++..++..+...|. ++..+.. .....++
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~--fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---Sf~RpNL- 655 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQK--FPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---SFNRPNL- 655 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHh--CCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---ccCccce-
Confidence 8899999999999998 88888765322211 23567999999999988876665553 3322211 1112222
Q ss_pred EEEEEeccchh-hhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccC
Q 007365 371 QRVEYVHESDK-RSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS 449 (606)
Q Consensus 371 ~~~~~~~~~~k-~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~ 449 (606)
.+.++....+ ...+.+++... ......||||.+++.|+.++..|...++.+..||++|++.+|..++++|..
T Consensus 656 -~y~Vv~k~kk~le~L~~~I~~~------~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~ 728 (1195)
T PLN03137 656 -WYSVVPKTKKCLEDIDKFIKEN------HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK 728 (1195)
T ss_pred -EEEEeccchhHHHHHHHHHHhc------ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc
Confidence 2333332222 23333333321 124568999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHH
Q 007365 450 GKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAE 518 (606)
Q Consensus 450 g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~ 518 (606)
|+++|||||+++++|||+|+|++||||++|.+++.|+||+|||||.|.++.|++||+..|...++.+++
T Consensus 729 Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 729 DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999888776666653
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-48 Score=422.77 Aligned_cols=328 Identities=20% Similarity=0.281 Sum_probs=255.2
Q ss_pred hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007365 159 RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
.++|..|+|+|+++|+.+++++|+++++|||+|||++|++|++.. ...+|||+||++|+.|+.+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------------~~~~lVi~P~~~L~~dq~~ 69 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------------DGITLVISPLISLMEDQVL 69 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------------CCcEEEEecHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998742 1249999999999999998
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHH---HHh-cCCcEEEecHHHHHHHH-Hhccc-cccceeEEEEecccccccCC--
Q 007365 239 EAKKFSYQTGVKVVVAYGGAPINQQLR---ELE-RGVDILVATPGRLVDLL-ERARV-SLQMIRYLALDEADRMLDMG-- 310 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Ilv~Tp~~L~~~l-~~~~~-~l~~~~~lVlDEah~~~~~g-- 310 (606)
.+..+ ++.+..+.++....++.. .+. ..++|+|+||++|.... ....+ .+.++++||+||||++++++
T Consensus 70 ~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 70 QLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 88864 677777777766543322 222 24799999999975422 11112 56789999999999999887
Q ss_pred CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc--CcEEEEeccccCccCceeEEEEEeccc-hhhhHHHH
Q 007365 311 FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA--NYVFLAVGRVGSSTDLIVQRVEYVHES-DKRSHLMD 387 (606)
Q Consensus 311 f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~--~~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ 387 (606)
|.+.+..+...... .+..++++||||++..+...+...+. ++..+... ....++. +...... .....+.+
T Consensus 146 fr~~~~~l~~l~~~--~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~--~~v~~~~~~~~~~l~~ 218 (470)
T TIGR00614 146 FRPDYKALGSLKQK--FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLY--YEVRRKTPKILEDLLR 218 (470)
T ss_pred cHHHHHHHHHHHHH--cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcE--EEEEeCCccHHHHHHH
Confidence 77777665332211 23567999999999987766555442 34333221 1122222 2222222 23344444
Q ss_pred HHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCC
Q 007365 388 LLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI 467 (606)
Q Consensus 388 ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDi 467 (606)
++... .+...+||||+++++++.+++.|+..++.+..+|++|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 219 ~l~~~------~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~ 292 (470)
T TIGR00614 219 FIRKE------FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK 292 (470)
T ss_pred HHHHh------cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc
Confidence 44331 124557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHH
Q 007365 468 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAEL 519 (606)
Q Consensus 468 p~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~ 519 (606)
|+|++||||++|.+++.|+||+|||||.|.+|.|++|++..|...++.++..
T Consensus 293 p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 293 PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988877776543
No 39
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-49 Score=368.50 Aligned_cols=340 Identities=32% Similarity=0.513 Sum_probs=291.4
Q ss_pred CCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCC
Q 007365 136 NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 215 (606)
Q Consensus 136 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~ 215 (606)
.+.-....|.++-|.++|++++-.++|..|..+|.++||...-|.|++++|..|.|||++|.+.-++++.--.
T Consensus 36 yv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~------- 108 (387)
T KOG0329|consen 36 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD------- 108 (387)
T ss_pred EEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC-------
Confidence 3333445689999999999999999999999999999999999999999999999999999999887764221
Q ss_pred CcccCcEEEEEccchHHHHHHHHHHHHhhh-cCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccc
Q 007365 216 ARTVYPLALILAPTRELSSQIHDEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM 294 (606)
Q Consensus 216 ~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~ 294 (606)
....+||+|.|||||-||..+..+|++ ...+++.+++||.+++.....+.+.++|+|+||++++.+..+..++|++
T Consensus 109 ---g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 109 ---GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred ---CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhh
Confidence 124599999999999999999999974 5689999999999999888888888899999999999999999999999
Q ss_pred eeEEEEecccccccC-CCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEecccc-CccCceeEE
Q 007365 295 IRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVG-SSTDLIVQR 372 (606)
Q Consensus 295 ~~~lVlDEah~~~~~-gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~-~~~~~i~~~ 372 (606)
++++||||||.|++. ....++.+|+..- |...|+++||||+++++..+++.|+.+|..+.++... .....+.|+
T Consensus 186 vkhFvlDEcdkmle~lDMrRDvQEifr~t----p~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 186 VKHFVLDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQY 261 (387)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHhhcC----cccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHH
Confidence 999999999999863 2344555555443 8899999999999999999999999999888776554 345667888
Q ss_pred EEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCC
Q 007365 373 VEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 373 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
|....+.+|..++.++|.... -..++||+.+.... . | +.
T Consensus 262 YvkLke~eKNrkl~dLLd~Le-------FNQVvIFvKsv~Rl------------------------------~-f---~k 300 (387)
T KOG0329|consen 262 YVKLKENEKNRKLNDLLDVLE-------FNQVVIFVKSVQRL------------------------------S-F---QK 300 (387)
T ss_pred HHhhhhhhhhhhhhhhhhhhh-------hcceeEeeehhhhh------------------------------h-h---hh
Confidence 888899999999999998775 44589999886540 0 3 22
Q ss_pred cEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEecc-CChhhHHHHHHHHHHhcCcccHHH
Q 007365 453 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE-NNLSLARPLAELMQESNQEVPAWL 531 (606)
Q Consensus 453 ~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~-~~~~~~~~l~~~l~~~~q~vp~~L 531 (606)
+ ||||+++.||+||..|+.|||||+|.+.++|+||++||||.|.+|.+++|++. ++..++..+.+..+-...++|+.+
T Consensus 301 r-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 301 R-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred h-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCccc
Confidence 3 89999999999999999999999999999999999999999999999999985 666777778777777778888763
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1e-46 Score=418.88 Aligned_cols=330 Identities=22% Similarity=0.310 Sum_probs=256.5
Q ss_pred HHHHH-hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHH
Q 007365 154 NLNIR-RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTREL 232 (606)
Q Consensus 154 ~~~l~-~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~L 232 (606)
.+.|+ .++|..|+|+|+++|+.+++++|+++++|||+|||++|++|++.. . ..+|||+|+++|
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~-------------g~tlVisPl~sL 77 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---D-------------GLTLVVSPLISL 77 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---C-------------CCEEEEecHHHH
Confidence 33443 369999999999999999999999999999999999999998742 1 138999999999
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hh-cCCcEEEecHHHHHHHHHhccccccceeEEEEeccccccc
Q 007365 233 SSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LE-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 308 (606)
Q Consensus 233 a~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~ 308 (606)
+.|+.+.++.+ ++.+.++.+......+... +. ...+|+|+||++|........+...++++||+||||++.+
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 99999988875 6777777776665544332 22 2478999999999743222233456789999999999998
Q ss_pred CC--CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhh--cCcEEEEeccccCccCceeEEEEEeccchhhhH
Q 007365 309 MG--FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFL--ANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSH 384 (606)
Q Consensus 309 ~g--f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 384 (606)
++ |.+.+..+...... .+..++++||||++..+...+...+ .++..... .. ...++ .+..+....+...
T Consensus 154 ~G~~fr~~y~~L~~l~~~--~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~-~~--~r~nl--~~~v~~~~~~~~~ 226 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQR--FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SF--DRPNI--RYTLVEKFKPLDQ 226 (607)
T ss_pred ccCcccHHHHHHHHHHHh--CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC-CC--CCCcc--eeeeeeccchHHH
Confidence 76 77777655332211 1356799999999988765444433 34433221 11 11222 2333333344444
Q ss_pred HHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccC
Q 007365 385 LMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARG 464 (606)
Q Consensus 385 l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~G 464 (606)
+..++... ...++||||+++++|+.+++.|...++.+..+|++|++.+|..+++.|+.|+.+|||||+++++|
T Consensus 227 l~~~l~~~-------~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~G 299 (607)
T PRK11057 227 LMRYVQEQ-------RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMG 299 (607)
T ss_pred HHHHHHhc-------CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhcc
Confidence 44444322 25679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHH
Q 007365 465 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLA 517 (606)
Q Consensus 465 lDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~ 517 (606)
||+|+|++|||||+|.++++|+||+|||||.|.+|.|++||+..|...++.+.
T Consensus 300 IDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877666554
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.3e-46 Score=415.60 Aligned_cols=320 Identities=21% Similarity=0.216 Sum_probs=250.9
Q ss_pred CCCCCCCHHHHhHHHHHhcCC-CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEE-EccchHHHHHHH
Q 007365 160 CKYVKPTPVQRHAIPISVAGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALI-LAPTRELSSQIH 237 (606)
Q Consensus 160 ~~~~~p~~~Q~~ai~~i~~~~-d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Li-l~Ptr~La~Qi~ 237 (606)
.+|. |||||+++|+.++.|+ ++++++|||||||.+|.++++.. ... ...|+.|| ++|||+||.|++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----------~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----------AKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----------ccccceEEEeCchHHHHHHHH
Confidence 4776 9999999999999997 67888999999999776555532 111 12244555 779999999999
Q ss_pred HHHHHhhhcC-----------------------CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc----
Q 007365 238 DEAKKFSYQT-----------------------GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV---- 290 (606)
Q Consensus 238 ~~~~~~~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~---- 290 (606)
++++++.... .+++.+++||.+...|+..+..+++|||+|+ +++.+..+
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gY 155 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccc
Confidence 9999988644 4889999999999999999999999999995 55544443
Q ss_pred ------------cccceeEEEEecccccccCCCHHHHHHHHHhcCCCC-CCCceEEEEeccChHHHHHHHHHhhcCcEEE
Q 007365 291 ------------SLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPP-PGVRQTMLFSATFPKEIQKLASDFLANYVFL 357 (606)
Q Consensus 291 ------------~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~-~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~ 357 (606)
.+.++++||||||| ++++|.+++..|+..+..+. ...+|+++||||++.++..+...++.++..+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i 233 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKH 233 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCcee
Confidence 26889999999999 78999999999999753221 1237999999999999888888888777666
Q ss_pred EeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCH
Q 007365 358 AVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 437 (606)
Q Consensus 358 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~ 437 (606)
.+.........+.+. ..+....|...++..+...... ...++||||+|++.|+.+++.|+..++ ..|||+|++
T Consensus 234 ~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e----~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q 306 (844)
T TIGR02621 234 PVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKD----SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRG 306 (844)
T ss_pred ecccccccccceEEE-EecChHHHHHHHHHHHHHHHhh----CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCH
Confidence 655444444555553 3333444554444444333321 256799999999999999999998877 899999999
Q ss_pred HHHH-----HHHHhccC----CC-------CcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcc-e
Q 007365 438 QERE-----LALRSFKS----GK-------TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG-L 500 (606)
Q Consensus 438 ~~R~-----~~l~~F~~----g~-------~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G-~ 500 (606)
.+|+ .++++|++ ++ ..|||||+++++||||+. ++||++..| ++.|+||+||++|.|+.+ .
T Consensus 307 ~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 307 AERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred HHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCc
Confidence 9999 88999987 44 679999999999999986 899998777 699999999999999864 4
Q ss_pred EEEEecc
Q 007365 501 ATAFFNE 507 (606)
Q Consensus 501 ~~~~~~~ 507 (606)
++++++.
T Consensus 384 ~i~vv~~ 390 (844)
T TIGR02621 384 QIAVVHL 390 (844)
T ss_pred eEEEEee
Confidence 4666643
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.6e-46 Score=425.18 Aligned_cols=343 Identities=22% Similarity=0.309 Sum_probs=258.2
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEcc
Q 007365 149 LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAP 228 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~P 228 (606)
+++.+.+.++. +|..|||+|++||+.+++++|++++||||||||++|++|+++.+....... ....++++|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~----~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG----ELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc----CCCCCeEEEEEcC
Confidence 56666666655 788999999999999999999999999999999999999999887543211 1123567999999
Q ss_pred chHHHHHHHHHHHH-------hh----hcC-CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc--cccc
Q 007365 229 TRELSSQIHDEAKK-------FS----YQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV--SLQM 294 (606)
Q Consensus 229 tr~La~Qi~~~~~~-------~~----~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~--~l~~ 294 (606)
|++|+.|+++.+.. ++ ... ++++.+.+|+.+..++.+.+.+.++|+|+||++|..++....+ .+++
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 99999999886553 22 122 6788899999988877777788899999999999988865543 5789
Q ss_pred eeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcC--------cEEEEeccccCcc
Q 007365 295 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLAN--------YVFLAVGRVGSST 366 (606)
Q Consensus 295 ~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~--------~~~~~~~~~~~~~ 366 (606)
+++||+||||.+++..+...+..++..+........|+++||||+++. ..+++ ++.. +..+ +. ....
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~-~L~~~~~~~~~r~~~i-v~-~~~~- 247 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAK-FLVGYEDDGEPRDCEI-VD-ARFV- 247 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHH-HhcCccccCCCCceEE-Ec-cCCC-
Confidence 999999999999988777777766665543334578999999998652 23332 2321 1111 11 0000
Q ss_pred CceeEEE-------EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC------CCCcEEeeC
Q 007365 367 DLIVQRV-------EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN------GFPATTIHG 433 (606)
Q Consensus 367 ~~i~~~~-------~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~------~~~~~~lhg 433 (606)
..+...+ ...........+.+.+.+.... ..++||||+|+..|+.++..|+.. +..+..+||
T Consensus 248 k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~-----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg 322 (876)
T PRK13767 248 KPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE-----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHS 322 (876)
T ss_pred ccceEEEeccCccccccccchhHHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeC
Confidence 0111000 0111122234445555554432 467999999999999999999763 467899999
Q ss_pred ccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccC-CCcceEEEEec
Q 007365 434 DRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GKSGLATAFFN 506 (606)
Q Consensus 434 ~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~-g~~G~~~~~~~ 506 (606)
+|++.+|..+++.|++|+++|||||+++++|||||+|++||+|+.|.++.+|+||+||+||. |....++++..
T Consensus 323 ~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 323 SLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999986 33344444443
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=8.1e-46 Score=412.80 Aligned_cols=326 Identities=21% Similarity=0.346 Sum_probs=261.7
Q ss_pred hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007365 159 RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
.++|..++|+|+++|+.++.++|+++++|||+|||++|++|++.. . ..+|||+|+++|+.|+.+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---~-------------g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---K-------------GLTVVISPLISLMKDQVD 71 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---C-------------CcEEEEcCCHHHHHHHHH
Confidence 478999999999999999999999999999999999999998732 1 138999999999999999
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHH---H-hcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCC--CH
Q 007365 239 EAKKFSYQTGVKVVVAYGGAPINQQLRE---L-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FE 312 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g--f~ 312 (606)
.++.+ ++.+..+.++.+..+.... + ...++|+++||++|........+...++++||+||||++.+++ |+
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 88875 6778777777765544332 2 2358999999999975444444567789999999999999876 88
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc--CcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHH
Q 007365 313 PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA--NYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLH 390 (606)
Q Consensus 313 ~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 390 (606)
+.+..+....... + ..++++||||.+..+...+...+. ++..+.. .....++ .+.......+...+.+++.
T Consensus 148 p~y~~l~~l~~~~-~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl--~~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 148 PEYQRLGSLAERF-P-QVPRIALTATADAETRQDIRELLRLADANEFIT---SFDRPNL--RFSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred HHHHHHHHHHHhC-C-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec---CCCCCCc--EEEEEeCCCHHHHHHHHHH
Confidence 8877765543222 2 234999999999988776666554 2222211 1111222 2333444556666666665
Q ss_pred HHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCc
Q 007365 391 AQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 470 (606)
Q Consensus 391 ~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v 470 (606)
... ..++||||++++.++.+++.|...++++..+|++|++.+|+.+++.|..|+++|||||+++++|||+|+|
T Consensus 221 ~~~-------~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v 293 (591)
T TIGR01389 221 KHR-------GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNV 293 (591)
T ss_pred hcC-------CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCC
Confidence 421 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHH
Q 007365 471 AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAE 518 (606)
Q Consensus 471 ~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~ 518 (606)
++||||++|.+++.|+|++|||||.|..+.|++||+..|...++.+++
T Consensus 294 ~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 294 RFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988877666554
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-45 Score=417.26 Aligned_cols=340 Identities=23% Similarity=0.291 Sum_probs=261.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPI-SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~-i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
.|++++|++.+.+.++..+|.+|+|+|.++++. ++.+++++++||||||||++|.+|++..+... .
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-------------~ 68 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-------------G 68 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-------------C
Confidence 478899999999999999999999999999998 78899999999999999999999999888532 2
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEe
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 301 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlD 301 (606)
++|||+|+++||.|+++.+++|.. .++++..++|+...... ....++|+|+||+++..++.+....++++++||+|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 499999999999999999998753 47899988887754332 22357999999999999988766668899999999
Q ss_pred cccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCce--------eEEE
Q 007365 302 EADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLI--------VQRV 373 (606)
Q Consensus 302 Eah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i--------~~~~ 373 (606)
|+|.+.+.++.+.++.++..+... ....|+|+||||+++. ..+++ ++....+....+.-.....+ ....
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~-~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~ 221 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRL-NPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQ 221 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhc-CCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeecccccc
Confidence 999999988999999888877543 3457999999999752 23332 33211110000000000000 0000
Q ss_pred EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-----------------------------
Q 007365 374 EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN----------------------------- 424 (606)
Q Consensus 374 ~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~----------------------------- 424 (606)
..+....+ .....++..... ...++||||++++.|+.++..|...
T Consensus 222 ~~~~~~~~-~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (737)
T PRK02362 222 REVEVPSK-DDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETS 295 (737)
T ss_pred ccCCCccc-hHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcccc
Confidence 00111111 223333333322 2567999999999999998887542
Q ss_pred -------CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE----ec-----CCCCHhHHHHH
Q 007365 425 -------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FD-----LPNDIDDYVHR 488 (606)
Q Consensus 425 -------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~----~d-----~p~s~~~y~QR 488 (606)
...+..+|++|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ || .|.++.+|+||
T Consensus 296 ~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm 375 (737)
T PRK02362 296 KDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQM 375 (737)
T ss_pred HHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHH
Confidence 135778999999999999999999999999999999999999999999997 77 68899999999
Q ss_pred hhccccCCCc--ceEEEEeccC
Q 007365 489 IGRTGRAGKS--GLATAFFNEN 508 (606)
Q Consensus 489 iGR~gR~g~~--G~~~~~~~~~ 508 (606)
+|||||.|.. |.|++++...
T Consensus 376 ~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 376 AGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred hhcCCCCCCCCCceEEEEecCc
Confidence 9999999875 8999988654
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-44 Score=407.84 Aligned_cols=340 Identities=20% Similarity=0.280 Sum_probs=262.5
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPI-SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~-i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
+|+++++++.+.+.++..+|.+|+|+|.++++. ++.+++++++||||||||++|.+|++..+.... .
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~------------~ 69 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREG------------G 69 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC------------C
Confidence 478889999999999999999999999999986 788999999999999999999999998876431 3
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEe
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 301 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlD 301 (606)
++|||+|+++|+.|+++.++.|. ..++++..++|+.+...+ ....++|+|+||+++..++.+....++++++||+|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 59999999999999999998874 358899999888764432 23458999999999999988766678999999999
Q ss_pred cccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCcc-CceeEEEEEeccch
Q 007365 302 EADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSST-DLIVQRVEYVHESD 380 (606)
Q Consensus 302 Eah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~ 380 (606)
|+|.+.+.++...++.++..+ ....|+|+||||+++. ..+++ ++....+....+..... ..+.+.+.......
T Consensus 146 E~H~l~~~~rg~~le~il~~l----~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~ 219 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHM----LGRAQILGLSATVGNA-EELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGK 219 (720)
T ss_pred CcCccCCccchHHHHHHHHhc----CcCCcEEEEEccCCCH-HHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcc
Confidence 999999988999999999887 4568999999999753 44444 44432221111100000 01111111121111
Q ss_pred --h-hhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHh---------------------------------C
Q 007365 381 --K-RSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYM---------------------------------N 424 (606)
Q Consensus 381 --k-~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~---------------------------------~ 424 (606)
+ ...+..++.+.+.. ..++||||++++.|+.++..|.. .
T Consensus 220 ~~~~~~~~~~~~~~~i~~-----~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 294 (720)
T PRK00254 220 IERFPNSWESLVYDAVKK-----GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKAL 294 (720)
T ss_pred hhcchHHHHHHHHHHHHh-----CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 1 12223334333322 56799999999999887766632 1
Q ss_pred CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE-------ecCCC-CHhHHHHHhhccccCC
Q 007365 425 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN-------FDLPN-DIDDYVHRIGRTGRAG 496 (606)
Q Consensus 425 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~-------~d~p~-s~~~y~QRiGR~gR~g 496 (606)
...+..+|++|++.+|..+++.|++|.++|||||+++++|||+|.+++||. ++.|. .+.+|+||+|||||.|
T Consensus 295 ~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 295 RGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred hhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 235889999999999999999999999999999999999999999999994 45443 5789999999999975
Q ss_pred --CcceEEEEeccCC
Q 007365 497 --KSGLATAFFNENN 509 (606)
Q Consensus 497 --~~G~~~~~~~~~~ 509 (606)
..|.+++++..++
T Consensus 375 ~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 375 YDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCceEEEEecCcc
Confidence 5699999987654
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.9e-43 Score=397.54 Aligned_cols=322 Identities=19% Similarity=0.226 Sum_probs=248.6
Q ss_pred CCHHHHHHHH-hCCCCCCCHHHHhHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 149 LGEELNLNIR-RCKYVKPTPVQRHAIPISVAG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 149 l~~~l~~~l~-~~~~~~p~~~Q~~ai~~i~~~------~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
.+..+.+.+. ..+| +|||+|.+||+.++++ +|++++++||||||.+|++|++..+... +
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-------------~ 501 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-------------K 501 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-------------C
Confidence 3444444444 4567 5999999999999885 7999999999999999999998876532 3
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHH---HHHHhc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
+++||+||++||.|+++.++++....++++..+++..+..++ ...+.. .++|||+||..| ...+.++++++
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~l 576 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGL 576 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCE
Confidence 599999999999999999999887778999888887764443 334444 489999999432 23457899999
Q ss_pred EEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEec
Q 007365 298 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVH 377 (606)
Q Consensus 298 lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 377 (606)
||+||+|++ .......+..+ +...|+++||||+.+....+....+.+...+...... ...+...+...
T Consensus 577 lVIDEahrf-----gv~~~~~L~~~----~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~- 644 (926)
T TIGR00580 577 LIIDEEQRF-----GVKQKEKLKEL----RTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEY- 644 (926)
T ss_pred EEeeccccc-----chhHHHHHHhc----CCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEec-
Confidence 999999994 33445555555 4568999999997665555555455565555432221 11233322211
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhccCCCCcEE
Q 007365 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPIL 455 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 455 (606)
. ...+.+.+...... ..+++|||++++.++.+++.|+.. ++++..+||+|++.+|++++++|++|+.+||
T Consensus 645 -~--~~~i~~~i~~el~~-----g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~IL 716 (926)
T TIGR00580 645 -D--PELVREAIRRELLR-----GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVL 716 (926)
T ss_pred -C--HHHHHHHHHHHHHc-----CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 1 12223333333322 567999999999999999999874 7889999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEecCCC-CHhHHHHHhhccccCCCcceEEEEeccCC
Q 007365 456 VATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENN 509 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QRiGR~gR~g~~G~~~~~~~~~~ 509 (606)
|||+++++|||||++++||+++.|. +..+|+||+||+||.|+.|.|++|+...+
T Consensus 717 VaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 717 VCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred EECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 9999999999999999999999975 68899999999999999999999997653
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.3e-42 Score=384.42 Aligned_cols=330 Identities=19% Similarity=0.270 Sum_probs=247.4
Q ss_pred HHHhCCCCCCCHHHHhHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccc
Q 007365 156 NIRRCKYVKPTPVQRHAIPISVAG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPT 229 (606)
Q Consensus 156 ~l~~~~~~~p~~~Q~~ai~~i~~~------~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Pt 229 (606)
.+....| +||++|+++|+.+..+ .++|++++||||||++|++|++..+.. +++++||+||
T Consensus 254 ~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-------------g~q~lilaPT 319 (681)
T PRK10917 254 FLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-------------GYQAALMAPT 319 (681)
T ss_pred HHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-------------CCeEEEEecc
Confidence 3344555 6999999999999886 479999999999999999999877642 2469999999
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEEECCCChHH---HHHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEEecccc
Q 007365 230 RELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQ---QLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 305 (606)
Q Consensus 230 r~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~ 305 (606)
++||.|+++.++++....++++.+++|+.+..+ ++..+.. .++|+|+||+.|.+ .+.+.++++||+||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 999999999999999888999999999987543 3444555 49999999988754 34588999999999999
Q ss_pred cccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHH
Q 007365 306 MLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHL 385 (606)
Q Consensus 306 ~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 385 (606)
+.. ..+..+... ....++++||||+.+....+.. ..+.....+.........+...+. ...+...+
T Consensus 395 fg~-----~qr~~l~~~----~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~---~~~~~~~~ 460 (681)
T PRK10917 395 FGV-----EQRLALREK----GENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVI---PDSRRDEV 460 (681)
T ss_pred hhH-----HHHHHHHhc----CCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEe---CcccHHHH
Confidence 532 233333333 2347899999997554433332 222222222222222223333222 23344556
Q ss_pred HHHHHHHHhcccCCCCceEEEEEcch--------hhHHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhccCCCCcEE
Q 007365 386 MDLLHAQVANGVHGKQSLTLVFVETK--------KGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPIL 455 (606)
Q Consensus 386 ~~ll~~~~~~~~~~~~~~~LVF~~s~--------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 455 (606)
++.+...... ..+++|||+.. ..++.+++.|... ++++..+||+|++.+|++++++|++|+.+||
T Consensus 461 ~~~i~~~~~~-----g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 535 (681)
T PRK10917 461 YERIREEIAK-----GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDIL 535 (681)
T ss_pred HHHHHHHHHc-----CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 6666665533 66799999854 4456777777765 4789999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEecCCC-CHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHh
Q 007365 456 VATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQES 523 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~ 523 (606)
|||+++++|||+|++++||+++.|. ....|+||+||+||.|.+|.|+++++....+....-.+++++.
T Consensus 536 VaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~ 604 (681)
T PRK10917 536 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRET 604 (681)
T ss_pred EECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHh
Confidence 9999999999999999999999997 5788999999999999999999999644333344444455543
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.5e-42 Score=396.94 Aligned_cols=317 Identities=18% Similarity=0.187 Sum_probs=245.9
Q ss_pred HHHHHHhCCCCCCCHHHHhHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEE
Q 007365 153 LNLNIRRCKYVKPTPVQRHAIPISVAG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALIL 226 (606)
Q Consensus 153 l~~~l~~~~~~~p~~~Q~~ai~~i~~~------~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil 226 (606)
..+....+.| .||++|.+||+.++.+ +|+|+|++||+|||.+|+.+++..+.. +++++||
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-------------g~qvlvL 655 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-------------HKQVAVL 655 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-------------CCeEEEE
Confidence 3444556666 7999999999999887 899999999999999999888765432 2469999
Q ss_pred ccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHh----cCCcEEEecHHHHHHHHHhccccccceeEEEEec
Q 007365 227 APTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRYLALDE 302 (606)
Q Consensus 227 ~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDE 302 (606)
+||++||.|+++.++++....++++.+++++.+..++...+. ..++|||+||+.|. ..+.++++++||+||
T Consensus 656 vPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDE 730 (1147)
T PRK10689 656 VPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDE 730 (1147)
T ss_pred eCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEec
Confidence 999999999999999877666788888888887766655443 35899999996432 345678999999999
Q ss_pred ccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhh
Q 007365 303 ADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKR 382 (606)
Q Consensus 303 ah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~ 382 (606)
+|++ ++. ....+..+ +..+|+++||||+.+.+..++...+.++..+...... ...+.+.+..... .
T Consensus 731 ahrf---G~~--~~e~lk~l----~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~---~ 796 (1147)
T PRK10689 731 EHRF---GVR--HKERIKAM----RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDS---L 796 (1147)
T ss_pred hhhc---chh--HHHHHHhc----CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCc---H
Confidence 9996 332 23444555 5678999999998777777777777787766543322 1123332222211 1
Q ss_pred hHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 383 SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 383 ~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
.....++.+.. ..++++|||++++.++.+++.|... ++.+..+||+|++.+|++++.+|++|+.+|||||++
T Consensus 797 ~~k~~il~el~------r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdI 870 (1147)
T PRK10689 797 VVREAILREIL------RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 (1147)
T ss_pred HHHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECch
Confidence 11112222222 2567999999999999999999887 788999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCC-CCHhHHHHHhhccccCCCcceEEEEeccC
Q 007365 461 AARGLDIPHVAHVVNFDLP-NDIDDYVHRIGRTGRAGKSGLATAFFNEN 508 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p-~s~~~y~QRiGR~gR~g~~G~~~~~~~~~ 508 (606)
+++|||||+|++||..+.. .+..+|+||+||+||.++.|.|++++...
T Consensus 871 ierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred hhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 9999999999999955443 35678999999999999999999888653
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-42 Score=389.99 Aligned_cols=339 Identities=18% Similarity=0.242 Sum_probs=255.2
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcE
Q 007365 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL 222 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~ 222 (606)
.|.+++|++.+.+.+...+|. |+++|+++++.++.+++++++||||||||+++.++++..+... .+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-------------~k 67 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-------------LK 67 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-------------Cc
Confidence 477889999999999998886 9999999999999999999999999999999999998877532 24
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEec
Q 007365 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 302 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDE 302 (606)
+||++|+++||.|++++++++. ..++++...+|+...... ..+.++|+|+||+++..++.+....+.++++||+||
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 9999999999999999999864 457888888887654322 234589999999999999888776789999999999
Q ss_pred ccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCcee-EEEEEeccch-
Q 007365 303 ADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIV-QRVEYVHESD- 380 (606)
Q Consensus 303 ah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~- 380 (606)
||++.+..+...++.++..+... ....|+|+||||+++. ..+++ ++....+....+.......+. ....+.....
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~-~~~~riI~lSATl~n~-~~la~-wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~ 220 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYV-NPDARILALSATVSNA-NELAQ-WLNASLIKSNFRPVPLKLGILYRKRLILDGYER 220 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhc-CcCCcEEEEeCccCCH-HHHHH-HhCCCccCCCCCCCCeEEEEEecCeeeeccccc
Confidence 99999988888888887766433 3467899999999753 34444 443222111100000000000 0000111111
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-------------------------CCCcEEeeCcc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-------------------------GFPATTIHGDR 435 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~lhg~~ 435 (606)
....+..++.+... +..++||||++++.|+.++..|... ...+..+|++|
T Consensus 221 ~~~~~~~~i~~~~~-----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl 295 (674)
T PRK01172 221 SQVDINSLIKETVN-----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGL 295 (674)
T ss_pred ccccHHHHHHHHHh-----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCC
Confidence 11123444444332 2567999999999999999888643 12467899999
Q ss_pred CHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecC---------CCCHhHHHHHhhccccCCC--cceEEEE
Q 007365 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL---------PNDIDDYVHRIGRTGRAGK--SGLATAF 504 (606)
Q Consensus 436 ~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~---------p~s~~~y~QRiGR~gR~g~--~G~~~~~ 504 (606)
++.+|..+++.|++|.++|||||+++++|||+|... ||+++. |.++.+|.||+|||||.|. .|.++++
T Consensus 296 ~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 296 SNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999999999999999999999999999864 554443 4588999999999999985 5778877
Q ss_pred eccC
Q 007365 505 FNEN 508 (606)
Q Consensus 505 ~~~~ 508 (606)
+...
T Consensus 375 ~~~~ 378 (674)
T PRK01172 375 AASP 378 (674)
T ss_pred ecCc
Confidence 6543
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.3e-41 Score=376.29 Aligned_cols=340 Identities=19% Similarity=0.266 Sum_probs=247.2
Q ss_pred HHHHHHHHhCCCCCCCHHHHhHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEE
Q 007365 151 EELNLNIRRCKYVKPTPVQRHAIPISVAG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLAL 224 (606)
Q Consensus 151 ~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~------~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~L 224 (606)
..+.+.+....| +||++|++||+.++.+ .+.|++++||||||++|++|++..+.. +++++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-------------g~qvl 288 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-------------GYQVA 288 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-------------CCcEE
Confidence 334556667777 7999999999998876 358999999999999999999877643 23599
Q ss_pred EEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHH---HHHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007365 225 ILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQ---QLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 225 il~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
|++||++||.|+++.++++....++++.+++|+....+ ++..+.. .++|+|+||+.|.+ .+.+.++++||+
T Consensus 289 ilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVI 363 (630)
T TIGR00643 289 LMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVII 363 (630)
T ss_pred EECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEE
Confidence 99999999999999999998888999999999987654 3334443 47999999998754 345788999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch
Q 007365 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
||+|++... +...+...... ....++++||||+.+....+.. ..+.....+.........+...+ +.. .
T Consensus 364 DEaH~fg~~----qr~~l~~~~~~--~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~--~~~-~ 432 (630)
T TIGR00643 364 DEQHRFGVE----QRKKLREKGQG--GFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVL--IKH-D 432 (630)
T ss_pred echhhccHH----HHHHHHHhccc--CCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEE--eCc-c
Confidence 999985432 22223222210 1256899999997554333222 12211111111111112232222 222 2
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcch--------hhHHHHHHHHHh--CCCCcEEeeCccCHHHHHHHHHhccCC
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETK--------KGADALEHWLYM--NGFPATTIHGDRTQQERELALRSFKSG 450 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~--------~~~~~l~~~L~~--~~~~~~~lhg~~~~~~R~~~l~~F~~g 450 (606)
+...+++.+.+...+ ..+++|||+.. ..++.+++.|.. .++.+..+||+|++.+|+.++++|++|
T Consensus 433 ~~~~~~~~i~~~l~~-----g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g 507 (630)
T TIGR00643 433 EKDIVYEFIEEEIAK-----GRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG 507 (630)
T ss_pred hHHHHHHHHHHHHHh-----CCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 335566666555433 56799999875 456677777765 377899999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCccEEEEecCCC-CHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcC
Q 007365 451 KTPILVATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQ 525 (606)
Q Consensus 451 ~~~iLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q 525 (606)
+.+|||||+++++|||+|++++||+++.|. +..+|+||+||+||.|++|.|++++.....+......+++.+...
T Consensus 508 ~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~d 583 (630)
T TIGR00643 508 EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLD 583 (630)
T ss_pred CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999986 688999999999999999999999944333333333455555433
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=5.6e-42 Score=398.88 Aligned_cols=303 Identities=22% Similarity=0.285 Sum_probs=222.0
Q ss_pred EEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh------------hcCCcEE
Q 007365 184 ACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS------------YQTGVKV 251 (606)
Q Consensus 184 i~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~------------~~~~~~~ 251 (606)
|+||||||||++|.+|+|..++..............++++|||+|+++|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999998653111000011235789999999999999999887522 1247899
Q ss_pred EEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc-cccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCc
Q 007365 252 VVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVR 330 (606)
Q Consensus 252 ~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~-~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~ 330 (606)
.+.+|+.+..++.+.+.+.++|||+||++|..+|.+. ...++++++|||||+|.|++..+...+..+++.+....+.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887777788999999999999988654 346899999999999999987655555555555443335678
Q ss_pred eEEEEeccChHHHHHHHHHhhc--CcEEEEeccccCccCceeEEEEEeccchh----------------h----hHHHHH
Q 007365 331 QTMLFSATFPKEIQKLASDFLA--NYVFLAVGRVGSSTDLIVQRVEYVHESDK----------------R----SHLMDL 388 (606)
Q Consensus 331 q~ll~SAT~~~~i~~l~~~~l~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~k----------------~----~~l~~l 388 (606)
|+|+||||+++ .+.+++ ||. .++.+. .........+. .+..+.+..+ . ..+...
T Consensus 161 QrIgLSATI~n-~eevA~-~L~g~~pv~Iv-~~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAA-FLGGDRPVTVV-NPPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHHH-HhcCCCCEEEE-CCCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999987 345554 453 233332 11111111121 1111111100 0 111111
Q ss_pred HHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCC---------------------------------CCcEEeeCcc
Q 007365 389 LHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNG---------------------------------FPATTIHGDR 435 (606)
Q Consensus 389 l~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~lhg~~ 435 (606)
+...+. ...++||||||++.|+.++..|++.. +.+..+||+|
T Consensus 237 il~~i~-----~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsL 311 (1490)
T PRK09751 237 ILDEVL-----RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSV 311 (1490)
T ss_pred HHHHHh-----cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccC
Confidence 111111 25679999999999999999987531 1256789999
Q ss_pred CHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccC
Q 007365 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495 (606)
Q Consensus 436 ~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~ 495 (606)
++++|..+++.|++|++++||||+.+++||||++|++||+|+.|.++.+|+||+||+||.
T Consensus 312 SkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 312 SKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred CHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.5e-42 Score=378.01 Aligned_cols=314 Identities=18% Similarity=0.241 Sum_probs=232.7
Q ss_pred HHHHhHHHHHhcCCCEEEEccCCCchhHH---------hHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007365 167 PVQRHAIPISVAGRDLMACAQTGSGKTAA---------FCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 167 ~~Q~~ai~~i~~~~d~li~a~TGsGKT~a---------~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
.+|+++++.+++++++|++|+||||||++ |++|.+..+.+-.. ....+.++|++|||+||.|+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-------~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-------NFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-------ccCCcEEEEECcHHHHHHHHH
Confidence 48999999999999999999999999997 44444544321110 012346999999999999999
Q ss_pred HHHHHhhh---cCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHH
Q 007365 238 DEAKKFSY---QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 314 (606)
Q Consensus 238 ~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~ 314 (606)
.++.+... ..++.+.+.+|+... .+.....+..+|+|+|++... ..++++++|||||||++..++ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hH
Confidence 99877543 245677888999872 332333346799999965211 247889999999999998875 45
Q ss_pred HHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEecc---------chhhhHH
Q 007365 315 IRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHE---------SDKRSHL 385 (606)
Q Consensus 315 i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l 385 (606)
+..++..+. +..+|+++||||++.+++.+ ..|+.++..+.+. +.....+.+.+..... ......+
T Consensus 310 lL~llk~~~---~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~ 383 (675)
T PHA02653 310 IIAVARKHI---DKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNI 383 (675)
T ss_pred HHHHHHHhh---hhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC--CCcCCCeEEEEeecCcccccchhhhHHHHHHH
Confidence 555554431 23469999999999988876 5788888777663 2223445554432211 0111122
Q ss_pred HHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhc-cCCCCcEEEEccccc
Q 007365 386 MDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSF-KSGKTPILVATDVAA 462 (606)
Q Consensus 386 ~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F-~~g~~~iLVaT~v~~ 462 (606)
...+.... ....+.+||||+++++|+.+++.|... ++.+..+||+|++. ++++++| ++|+.+|||||++++
T Consensus 384 l~~L~~~~----~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAE 457 (675)
T PHA02653 384 VTALKKYT----PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLE 457 (675)
T ss_pred HHHHHHhh----cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhh
Confidence 23332211 112457999999999999999999877 78999999999975 5677777 789999999999999
Q ss_pred cCCCCCCccEEEEec---CCC---------CHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007365 463 RGLDIPHVAHVVNFD---LPN---------DIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 463 ~GlDip~v~~VI~~d---~p~---------s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
+|||||+|++||+++ .|. |.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 458 RGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 458 SSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999999998 565 889999999999999 89999999998764
No 53
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.3e-41 Score=371.92 Aligned_cols=343 Identities=24% Similarity=0.323 Sum_probs=275.7
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEcc
Q 007365 149 LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAP 228 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~P 228 (606)
|++.+.+.++.. |..|||.|++|||.+++|+++|++||||||||.|+.+|++..+.+... .....+..+|+|+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-----~~~~~~i~~lYIsP 81 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-----GKLEDGIYALYISP 81 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-----CCCCCceEEEEeCc
Confidence 688888888887 999999999999999999999999999999999999999999998741 11233467999999
Q ss_pred chHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc--cccceeEEEEeccccc
Q 007365 229 TRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV--SLQMIRYLALDEADRM 306 (606)
Q Consensus 229 tr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~--~l~~~~~lVlDEah~~ 306 (606)
.|+|...+...++.+....++.+.+-+|.++..+..+.+.+.+||||+||+.|.-+|...+. .|.++++||+||+|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 99999999999999999999999999999988877777888899999999999988876433 6899999999999999
Q ss_pred ccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcC--cEEEEeccccCccCceeEEEEEecc-----c
Q 007365 307 LDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLAN--YVFLAVGRVGSSTDLIVQRVEYVHE-----S 379 (606)
Q Consensus 307 ~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~--~~~~~~~~~~~~~~~i~~~~~~~~~-----~ 379 (606)
.+.....++.--++.+....+ +.|.|++|||..+. ..+++.+... +..+...... ......+..... .
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~---k~~~i~v~~p~~~~~~~~ 236 (814)
T COG1201 162 AESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA---KKLEIKVISPVEDLIYDE 236 (814)
T ss_pred hccccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC---CcceEEEEecCCcccccc
Confidence 988877888777777765555 89999999998642 3334333332 2222111111 111111111111 2
Q ss_pred hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCC-CCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc
Q 007365 380 DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNG-FPATTIHGDRTQQERELALRSFKSGKTPILVAT 458 (606)
Q Consensus 380 ~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 458 (606)
.-...+++.+.+...+ ...+|||+||+..++.++..|++.. ..+..+||+++.++|..+.++|++|+.+++|||
T Consensus 237 ~~~~~~~~~i~~~v~~-----~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~T 311 (814)
T COG1201 237 ELWAALYERIAELVKK-----HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVAT 311 (814)
T ss_pred chhHHHHHHHHHHHhh-----cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEc
Confidence 2334456666655543 4479999999999999999999887 889999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEecCCCCHhHHHHHhhcccc-CCCcceEEEEecc
Q 007365 459 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR-AGKSGLATAFFNE 507 (606)
Q Consensus 459 ~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR-~g~~G~~~~~~~~ 507 (606)
+.++-||||-+|+.||+|..|.++..++||+||+|+ .+.....+++...
T Consensus 312 SSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 312 SSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999996 4444555555443
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4.8e-41 Score=390.46 Aligned_cols=301 Identities=23% Similarity=0.300 Sum_probs=240.0
Q ss_pred CCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHH
Q 007365 161 KYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 240 (606)
Q Consensus 161 ~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~ 240 (606)
++ +||++|++++|.++.++|++++||||+|||+ |.++++..+... ++++|||+||++|+.|+++.+
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~~------------g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAKK------------GKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHhc------------CCeEEEEeccHHHHHHHHHHH
Confidence 55 8999999999999999999999999999996 555555443221 356999999999999999999
Q ss_pred HHhhhcCCcEEEEEECCCC-----hHHHHHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEEeccccccc------
Q 007365 241 KKFSYQTGVKVVVAYGGAP-----INQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD------ 308 (606)
Q Consensus 241 ~~~~~~~~~~~~~~~gg~~-----~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~------ 308 (606)
++++...++.+.+++++.. ..++...+.. .++|+|+||++|.+++. .+....+++||+||||+|++
T Consensus 144 ~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id 221 (1176)
T PRK09401 144 EKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNID 221 (1176)
T ss_pred HHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchh
Confidence 9999888888887777654 2333444554 58999999999999876 34566799999999999996
Q ss_pred -----CCCH-HHHHHHHHhcCCC--------------------CCCCceEEEEeccChHH-HHHHHHHhhcCcEEEEecc
Q 007365 309 -----MGFE-PQIRKIVQQMDMP--------------------PPGVRQTMLFSATFPKE-IQKLASDFLANYVFLAVGR 361 (606)
Q Consensus 309 -----~gf~-~~i~~i~~~l~~~--------------------~~~~~q~ll~SAT~~~~-i~~l~~~~l~~~~~~~~~~ 361 (606)
+||. +++..++..+... .+..+|+++||||+++. +.. .++.++..+.+..
T Consensus 222 ~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~ 298 (1176)
T PRK09401 222 KLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGS 298 (1176)
T ss_pred hHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecC
Confidence 7885 6788888776320 01268999999999764 332 2234444456666
Q ss_pred ccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhh---HHHHHHHHHhCCCCcEEeeCccCHH
Q 007365 362 VGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKG---ADALEHWLYMNGFPATTIHGDRTQQ 438 (606)
Q Consensus 362 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~---~~~l~~~L~~~~~~~~~lhg~~~~~ 438 (606)
......++.+.+..+. +|...+.+++... ...+||||++++. ++.|+++|+..++++..+||+|
T Consensus 299 ~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--------~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l--- 365 (1176)
T PRK09401 299 PVFYLRNIVDSYIVDE--DSVEKLVELVKRL--------GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF--- 365 (1176)
T ss_pred cccccCCceEEEEEcc--cHHHHHHHHHHhc--------CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---
Confidence 5556677887776554 5666777776532 3469999999877 9999999999999999999999
Q ss_pred HHHHHHHhccCCCCcEEEE----ccccccCCCCCC-ccEEEEecCCC------CHhHHHHHhhccccC
Q 007365 439 ERELALRSFKSGKTPILVA----TDVAARGLDIPH-VAHVVNFDLPN------DIDDYVHRIGRTGRA 495 (606)
Q Consensus 439 ~R~~~l~~F~~g~~~iLVa----T~v~~~GlDip~-v~~VI~~d~p~------s~~~y~QRiGR~gR~ 495 (606)
+..+++|++|+++|||| |++++||||||+ |++||||++|. ..+.|.||+||+...
T Consensus 366 --~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 366 --ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred --HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 23469999999999999 699999999999 89999999998 778899999999743
No 55
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9e-41 Score=376.08 Aligned_cols=309 Identities=17% Similarity=0.221 Sum_probs=234.4
Q ss_pred HHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH-hhh
Q 007365 167 PVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK-FSY 245 (606)
Q Consensus 167 ~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~-~~~ 245 (606)
.+-.+.+..+..++++|++|+||||||++|.+++++.... .+++||++|||++|.|+++.+.+ +..
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------------~~~ilvlqPrR~aA~qiA~rva~~~~~ 71 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-------------GGKIIMLEPRRLAARSAAQRLASQLGE 71 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-------------CCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 3455667778888999999999999999999999876521 23599999999999999998864 434
Q ss_pred cCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEeccc-ccccCCCHHHH-HHHHHhcC
Q 007365 246 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQI-RKIVQQMD 323 (606)
Q Consensus 246 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~i-~~i~~~l~ 323 (606)
..+..+...+.+.. ......+|+|+|+++|++++.+. ..++++++|||||+| ++++.++...+ ..+...+
T Consensus 72 ~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l- 143 (819)
T TIGR01970 72 AVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSL- 143 (819)
T ss_pred CcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhc-
Confidence 44555555444432 22345799999999999999875 479999999999999 58887765433 3444444
Q ss_pred CCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhh-HHHHHHHHHHhcccCCCCc
Q 007365 324 MPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRS-HLMDLLHAQVANGVHGKQS 402 (606)
Q Consensus 324 ~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~~~~~ 402 (606)
+.+.|+|+||||++.+. +..|+.+...+.+... ...+.+.|.......+.. .+...+...... ..+
T Consensus 144 ---r~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g 210 (819)
T TIGR01970 144 ---REDLKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS----ETG 210 (819)
T ss_pred ---CCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh----cCC
Confidence 56789999999998753 3566665444433211 122444444333333322 222333333221 256
Q ss_pred eEEEEEcchhhHHHHHHHHHh---CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCC
Q 007365 403 LTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP 479 (606)
Q Consensus 403 ~~LVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p 479 (606)
.+||||+++.+++.+++.|++ .++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||||+|++||++++|
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~ 290 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLA 290 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcc
Confidence 799999999999999999987 47889999999999999999999999999999999999999999999999999987
Q ss_pred C------------------CHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007365 480 N------------------DIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 480 ~------------------s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
. |.++|+||+|||||. ++|.||.|+++.+.
T Consensus 291 r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 291 RVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred cccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 5 345699999999999 89999999987543
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.5e-41 Score=355.62 Aligned_cols=331 Identities=23% Similarity=0.376 Sum_probs=262.0
Q ss_pred hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007365 159 RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
-++|..+++-|.++|..+++++|+|+.+|||.||+++|.+|++-. .. .+|||+|...|.....+
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G-------------~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EG-------------LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CC-------------CEEEECchHHHHHHHHH
Confidence 358999999999999999999999999999999999999998743 11 39999999999999888
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHH---HHhcC-CcEEEecHHHHHHHHHhccccccceeEEEEecccccccCC--CH
Q 007365 239 EAKKFSYQTGVKVVVAYGGAPINQQLR---ELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FE 312 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~-~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g--f~ 312 (606)
.++.. |+++..+....+..+... .+..+ .+||+-+|++|..--....+.-..+.++||||||++.+|| |+
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 88875 788888877766544432 33333 7999999999965433333345668899999999999998 99
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc--CcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHH
Q 007365 313 PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA--NYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLH 390 (606)
Q Consensus 313 ~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 390 (606)
+.+..+-......+ +..++.||||.+..++..+...|. ++..+.. ....+++.-. .+....-...+. ++.
T Consensus 152 P~Y~~lg~l~~~~~--~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~---sfdRpNi~~~--v~~~~~~~~q~~-fi~ 223 (590)
T COG0514 152 PDYRRLGRLRAGLP--NPPVLALTATATPRVRDDIREQLGLQDANIFRG---SFDRPNLALK--VVEKGEPSDQLA-FLA 223 (590)
T ss_pred HhHHHHHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe---cCCCchhhhh--hhhcccHHHHHH-HHH
Confidence 99998877664432 567999999999988877766654 3222211 1122223211 111111111122 332
Q ss_pred HHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCc
Q 007365 391 AQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 470 (606)
Q Consensus 391 ~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v 470 (606)
+ ..+......||||.|++.++.++++|...++.+..||++|+..+|+.+.++|..++.+|+|||.++..|||.|+|
T Consensus 224 ~----~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdV 299 (590)
T COG0514 224 T----VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDV 299 (590)
T ss_pred h----hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCc
Confidence 2 112236668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHH
Q 007365 471 AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQ 521 (606)
Q Consensus 471 ~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~ 521 (606)
.+|||||+|.|++.|+|-+|||||.|.+..|++||++.|....+.+++..+
T Consensus 300 RfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 300 RFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred eEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999888777766643
No 57
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=336.42 Aligned_cols=289 Identities=31% Similarity=0.500 Sum_probs=234.8
Q ss_pred ccCcEEEEEccchHHHHHHHHHHHHhh---hcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccc
Q 007365 218 TVYPLALILAPTRELSSQIHDEAKKFS---YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM 294 (606)
Q Consensus 218 ~~~p~~Lil~Ptr~La~Qi~~~~~~~~---~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~ 294 (606)
.+.|.+||+-|.|||++|.+..+++|. ....++..++.||.-...|...+..+.+|+|.||+||.+++....+.+..
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 345889999999999999999777764 44567778889999999999999999999999999999999999999999
Q ss_pred eeEEEEecccccccCCCHHHHHHHHHhcCCCCC--CCceEEEEeccChH-HHHHHHHHhhcCcEEEEeccccCccCceeE
Q 007365 295 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPP--GVRQTMLFSATFPK-EIQKLASDFLANYVFLAVGRVGSSTDLIVQ 371 (606)
Q Consensus 295 ~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~--~~~q~ll~SAT~~~-~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~ 371 (606)
+.++|+||+|.++..++.+.|.++..++..... ...|.+++|||+.. ++.++.+..|.-+..+.+...+...+.+.+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999999999999999888854432 35799999999843 566777777777777666655555554443
Q ss_pred EEEEecc------------------------------chhhhHHHHHHHHHH--hcccCCCCceEEEEEcchhhHHHHHH
Q 007365 372 RVEYVHE------------------------------SDKRSHLMDLLHAQV--ANGVHGKQSLTLVFVETKKGADALEH 419 (606)
Q Consensus 372 ~~~~~~~------------------------------~~k~~~l~~ll~~~~--~~~~~~~~~~~LVF~~s~~~~~~l~~ 419 (606)
.+..+.. .+.......+++-.. .........++||||.|+..|+.|.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 3332211 111122222221110 00012235679999999999999999
Q ss_pred HHHhC---CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCC
Q 007365 420 WLYMN---GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG 496 (606)
Q Consensus 420 ~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g 496 (606)
+|.+. .+.|+.+|+++.+.||.+-+++|+.++.++|||||+++|||||..+-++||..+|.+..+|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 99876 478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEec
Q 007365 497 KSGLATAFFN 506 (606)
Q Consensus 497 ~~G~~~~~~~ 506 (606)
+-|.++.++.
T Consensus 604 rmglaislva 613 (725)
T KOG0349|consen 604 RMGLAISLVA 613 (725)
T ss_pred hcceeEEEee
Confidence 9999999974
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.5e-40 Score=370.68 Aligned_cols=308 Identities=16% Similarity=0.224 Sum_probs=232.8
Q ss_pred HHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH-hhh
Q 007365 167 PVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK-FSY 245 (606)
Q Consensus 167 ~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~-~~~ 245 (606)
.+-.+.+..+.++++++++|+||||||++|.+++++.... ..++||++|||++|.|+++.+.+ +..
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-------------~~~ilvlqPrR~aA~qia~rva~~l~~ 74 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-------------NGKIIMLEPRRLAARNVAQRLAEQLGE 74 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-------------CCeEEEECChHHHHHHHHHHHHHHhCc
Confidence 3445666778888999999999999999999998864311 12599999999999999999864 444
Q ss_pred cCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccc-cccCCCHH-HHHHHHHhcC
Q 007365 246 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEP-QIRKIVQQMD 323 (606)
Q Consensus 246 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~-~~~~gf~~-~i~~i~~~l~ 323 (606)
..+..+...+++.+. .....+|+|+||++|++++... ..++++++|||||+|+ +++.++.. .+..++..+
T Consensus 75 ~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l- 146 (812)
T PRK11664 75 KPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGL- 146 (812)
T ss_pred ccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC-
Confidence 456666666665542 2234689999999999998865 4699999999999996 56554322 234444444
Q ss_pred CCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhh-HHHHHHHHHHhcccCCCCc
Q 007365 324 MPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRS-HLMDLLHAQVANGVHGKQS 402 (606)
Q Consensus 324 ~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~~~~~ 402 (606)
+++.|+|+||||++.+ . ...|+.+...+.+... ...+.+.|..+....+.. .+...+...... ..+
T Consensus 147 ---r~~lqlilmSATl~~~--~-l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g 213 (812)
T PRK11664 147 ---RDDLKLLIMSATLDND--R-LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQ----ESG 213 (812)
T ss_pred ---CccceEEEEecCCCHH--H-HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHh----CCC
Confidence 5678999999999875 2 3556665444433211 123445554444344433 222233333322 256
Q ss_pred eEEEEEcchhhHHHHHHHHHh---CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCC
Q 007365 403 LTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP 479 (606)
Q Consensus 403 ~~LVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p 479 (606)
.+||||+++++++.+++.|+. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||||+|++||+++++
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~ 293 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLE 293 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCc
Confidence 799999999999999999987 57889999999999999999999999999999999999999999999999998776
Q ss_pred C------------------CHhHHHHHhhccccCCCcceEEEEeccCC
Q 007365 480 N------------------DIDDYVHRIGRTGRAGKSGLATAFFNENN 509 (606)
Q Consensus 480 ~------------------s~~~y~QRiGR~gR~g~~G~~~~~~~~~~ 509 (606)
. |.++|+||+|||||. .+|.||.|+++.+
T Consensus 294 r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 294 RVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred ccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 4 346899999999999 7999999998653
No 59
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.1e-40 Score=388.49 Aligned_cols=328 Identities=20% Similarity=0.250 Sum_probs=250.3
Q ss_pred HHHHHHHh-CCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccch
Q 007365 152 ELNLNIRR-CKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTR 230 (606)
Q Consensus 152 ~l~~~l~~-~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr 230 (606)
++.+.+++ .+| +||++|+++|+.+++++|++++||||+|||++++++++.... .++++|||+||+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-------------~g~~aLVl~PTr 132 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-------------KGKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-------------cCCeEEEEECHH
Confidence 34455555 788 699999999999999999999999999999965655543221 124699999999
Q ss_pred HHHHHHHHHHHHhhhcC--CcEEEEEECCCChHHHH---HHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEEeccc
Q 007365 231 ELSSQIHDEAKKFSYQT--GVKVVVAYGGAPINQQL---RELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEAD 304 (606)
Q Consensus 231 ~La~Qi~~~~~~~~~~~--~~~~~~~~gg~~~~~~~---~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah 304 (606)
+|+.|+++.++.++... ++++..++|+.+..++. ..+.. .++|||+||++|.+.+... ...++++||+||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD 210 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECce
Confidence 99999999999987654 46777888988876653 33444 4899999999999877642 22679999999999
Q ss_pred cccc-----------CCCHHHHHH----HHHh---------------cC---CCCCCCce-EEEEeccChHHHHHHHHHh
Q 007365 305 RMLD-----------MGFEPQIRK----IVQQ---------------MD---MPPPGVRQ-TMLFSATFPKEIQKLASDF 350 (606)
Q Consensus 305 ~~~~-----------~gf~~~i~~----i~~~---------------l~---~~~~~~~q-~ll~SAT~~~~i~~l~~~~ 350 (606)
+|++ +||.+++.. |+.. +. ...+..+| ++++|||++.... ...+
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l 288 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKL 288 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHH
Confidence 9986 689888875 3321 00 01134455 6779999985311 1233
Q ss_pred hcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhh---HHHHHHHHHhCCCC
Q 007365 351 LANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKG---ADALEHWLYMNGFP 427 (606)
Q Consensus 351 l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~---~~~l~~~L~~~~~~ 427 (606)
+.++..+.+........++.+.+..+....+ ..+.+++... ...+||||++++. |+.|+++|...+++
T Consensus 289 ~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--------g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~ 359 (1638)
T PRK14701 289 YRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--------GKGGLIFVPIDEGAEKAEEIEKYLLEDGFK 359 (1638)
T ss_pred hhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--------CCCeEEEEeccccchHHHHHHHHHHHCCCe
Confidence 4566667777666667778888776654444 4566665432 3458999999875 58999999999999
Q ss_pred cEEeeCccCHHHHHHHHHhccCCCCcEEEEc----cccccCCCCCC-ccEEEEecCCC---CHhHHHHHh----------
Q 007365 428 ATTIHGDRTQQERELALRSFKSGKTPILVAT----DVAARGLDIPH-VAHVVNFDLPN---DIDDYVHRI---------- 489 (606)
Q Consensus 428 ~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT----~v~~~GlDip~-v~~VI~~d~p~---s~~~y~QRi---------- 489 (606)
+..+|++ |..++++|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|-.
T Consensus 360 a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~ 434 (1638)
T PRK14701 360 IELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEI 434 (1638)
T ss_pred EEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHH
Confidence 9999994 8899999999999999999 59999999999 99999999999 888777765
Q ss_pred ---hccccCCCcceEEEEeccCChh
Q 007365 490 ---GRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 490 ---GR~gR~g~~G~~~~~~~~~~~~ 511 (606)
||++|.|.+..++..+...+..
T Consensus 435 ~~~~~a~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 435 LKIEEELKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred HHhhhhcccCCcchhHHHhHHHHHH
Confidence 9999998887777444443333
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.1e-39 Score=349.00 Aligned_cols=323 Identities=21% Similarity=0.204 Sum_probs=249.5
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
..|+|+|..+++.+++|+ |+.++||+|||++|++|++...+.. +.++||+||++||.|.++++..
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G-------------~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG-------------LPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC-------------CeEEEEcCcHHHHHHHHHHHHH
Confidence 379999999999999999 9999999999999999999775432 4599999999999999999999
Q ss_pred hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhcc-------------------------cccccee
Q 007365 243 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR-------------------------VSLQMIR 296 (606)
Q Consensus 243 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~~-------------------------~~l~~~~ 296 (606)
+....++++.+++++.+ .+.+.+..+|+|+|+|...| .|.|.... .....+.
T Consensus 167 l~~~lGlsv~~i~gg~~--~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 167 LYEALGLTVGCVVEDQS--PDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred HHhhcCCEEEEEeCCCC--HHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 99999999999999975 34556677899999999887 44443321 1135578
Q ss_pred EEEEecccccc-cCC-----------------CHHHHHHHHHhcCCC---------------------------------
Q 007365 297 YLALDEADRML-DMG-----------------FEPQIRKIVQQMDMP--------------------------------- 325 (606)
Q Consensus 297 ~lVlDEah~~~-~~g-----------------f~~~i~~i~~~l~~~--------------------------------- 325 (606)
+.|+||+|.++ |.. +...+..++..+...
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 99999999754 210 001111111111000
Q ss_pred ----------------------------------------------------------------CCCC------------
Q 007365 326 ----------------------------------------------------------------PPGV------------ 329 (606)
Q Consensus 326 ----------------------------------------------------------------~~~~------------ 329 (606)
....
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 0000
Q ss_pred ----ceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEE
Q 007365 330 ----RQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTL 405 (606)
Q Consensus 330 ----~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~L 405 (606)
.++.+||||.+....++.+.|..+++.+...... .....+.+.+++..+|...|.+++..... ...++|
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-----~~~pvL 477 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHA-----QGRPVL 477 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHh-----cCCCEE
Confidence 1345799999988888888887777665443322 33344556677778899888888876532 256799
Q ss_pred EEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCC---Ccc-----EEEEec
Q 007365 406 VFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP---HVA-----HVVNFD 477 (606)
Q Consensus 406 VF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip---~v~-----~VI~~d 477 (606)
|||+|++.++.|++.|...++++..||+++.+ |+..+..|+.+...|+|||++++||+||+ +|. |||+|+
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 99999999999999999999999999998654 44555555555567999999999999999 776 999999
Q ss_pred CCCCHhHHHHHhhccccCCCcceEEEEeccCChh
Q 007365 478 LPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 478 ~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~ 511 (606)
+|.+.+.|+||+|||||.|++|.+++|++.+|.-
T Consensus 556 ~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 556 RHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred CCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 9999999999999999999999999999986643
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-38 Score=322.74 Aligned_cols=327 Identities=23% Similarity=0.265 Sum_probs=244.4
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
..+++.||.......+.+ ++|++.|||.|||+.+++-+...+...+. ++|+++||+-|+.|.++.|+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~------------kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG------------KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC------------eEEEecCCchHHHHHHHHHH
Confidence 346889999988877776 99999999999999988887776654431 49999999999999999999
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHH-HHH
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK-IVQ 320 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~-i~~ 320 (606)
++..-+.-.++.++|.....+....+. ...|+|+||+.+.+-|..+.+++.++.+||+|||||-....-...+.+ .+.
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred HHhCCChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 997666667888888777555444444 469999999999999999999999999999999999654432233333 333
Q ss_pred hcCCCCCCCceEEEEeccChH---HHHHHHHHhhcCcEEEEecccc----------------------------------
Q 007365 321 QMDMPPPGVRQTMLFSATFPK---EIQKLASDFLANYVFLAVGRVG---------------------------------- 363 (606)
Q Consensus 321 ~l~~~~~~~~q~ll~SAT~~~---~i~~l~~~~l~~~~~~~~~~~~---------------------------------- 363 (606)
. ..++.+++||||+-. .++.+++++--..+.+......
T Consensus 159 ~-----~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~ 233 (542)
T COG1111 159 S-----AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALK 233 (542)
T ss_pred h-----ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHH
Confidence 2 345579999999632 2333333221111110000000
Q ss_pred ---------------C------------------cc-Cc-----------------------------------------
Q 007365 364 ---------------S------------------ST-DL----------------------------------------- 368 (606)
Q Consensus 364 ---------------~------------------~~-~~----------------------------------------- 368 (606)
. .. +.
T Consensus 234 ~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~ 313 (542)
T COG1111 234 PRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEA 313 (542)
T ss_pred HHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 0 00 00
Q ss_pred -----------------------eeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCC
Q 007365 369 -----------------------IVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNG 425 (606)
Q Consensus 369 -----------------------i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~ 425 (606)
.......--...|+..+.+++++.+.. +...++|||++.+++++.+.++|...+
T Consensus 314 ~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k---~~~~RvIVFT~yRdTae~i~~~L~~~~ 390 (542)
T COG1111 314 TKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEK---NGDSRVIVFTEYRDTAEEIVNFLKKIG 390 (542)
T ss_pred cccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhc---CCCceEEEEehhHhHHHHHHHHHHhcC
Confidence 000000001245666666777666643 336889999999999999999999998
Q ss_pred CCcE-Eee--------CccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCC
Q 007365 426 FPAT-TIH--------GDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG 496 (606)
Q Consensus 426 ~~~~-~lh--------g~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g 496 (606)
..+. .+- .+|+|.++.+++++|+.|.++|||||+++++|||||+|+.||+|++-.|.-.++||.|||||.
T Consensus 391 ~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~- 469 (542)
T COG1111 391 IKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK- 469 (542)
T ss_pred CcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-
Confidence 8775 332 469999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcceEEEEeccCChh
Q 007365 497 KSGLATAFFNENNLS 511 (606)
Q Consensus 497 ~~G~~~~~~~~~~~~ 511 (606)
++|.+++|++++...
T Consensus 470 r~Grv~vLvt~gtrd 484 (542)
T COG1111 470 RKGRVVVLVTEGTRD 484 (542)
T ss_pred CCCeEEEEEecCchH
Confidence 899999999987443
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2e-38 Score=345.51 Aligned_cols=308 Identities=17% Similarity=0.181 Sum_probs=220.9
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
...|+++|+++++.++.+++.++++|||+|||+++... ...+.... ..++|||+||++|+.||.++++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~~-----------~~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLENY-----------EGKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhcC-----------CCeEEEEECcHHHHHHHHHHHH
Confidence 35799999999999999999999999999999975432 22222221 1249999999999999999999
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
+|.......+..+.+|.... ...+|+|+||++|.+... ..++++++||+||||++... .+..++..
T Consensus 180 ~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~ 245 (501)
T PHA02558 180 DYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITK 245 (501)
T ss_pred HhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHh
Confidence 98754444555666665432 347999999999976542 24688999999999998764 45666666
Q ss_pred cCCCCCCCceEEEEeccChHHHHHHH--HHhhcCcEEEEeccccCc-----cCc-e--------------------eEEE
Q 007365 322 MDMPPPGVRQTMLFSATFPKEIQKLA--SDFLANYVFLAVGRVGSS-----TDL-I--------------------VQRV 373 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT~~~~i~~l~--~~~l~~~~~~~~~~~~~~-----~~~-i--------------------~~~~ 373 (606)
+ ++.+++++||||++....... ..++. ++...+...... ... + .+.+
T Consensus 246 ~----~~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 320 (501)
T PHA02558 246 L----DNCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEI 320 (501)
T ss_pred h----hccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHH
Confidence 6 456789999999865322111 11111 111111100000 000 0 0000
Q ss_pred -EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCC
Q 007365 374 -EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 374 -~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
.......+...+.+++..... ...++||||.+.++++.|++.|+..++++..+||+|++.+|..+++.|+.++.
T Consensus 321 ~~l~~~~~Rn~~I~~~~~~~~~-----~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~ 395 (501)
T PHA02558 321 KYITSHTKRNKWIANLALKLAK-----KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKG 395 (501)
T ss_pred HHHhccHHHHHHHHHHHHHHHh-----cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 001112223333333333321 25678999999999999999999999999999999999999999999999999
Q ss_pred cEEEEc-cccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEe
Q 007365 453 PILVAT-DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 505 (606)
Q Consensus 453 ~iLVaT-~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~ 505 (606)
.||||| +++++|+|+|++++||+++++.+...|+||+||++|.+.......++
T Consensus 396 ~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 396 IIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred eEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 999998 99999999999999999999999999999999999987654333333
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.9e-38 Score=333.81 Aligned_cols=302 Identities=20% Similarity=0.163 Sum_probs=210.5
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCCh
Q 007365 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~ 260 (606)
+++++||||||||++|++|++..+.... ..++||++|+++|+.|+++.++.+... ++..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~-----------~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK-----------ADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC-----------CCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHH
Confidence 5899999999999999999997754321 235999999999999999999987432 33333443221
Q ss_pred H------------HHHHHHh------cCCcEEEecHHHHHHHHHhcc----cccc--ceeEEEEecccccccCCCHHHHH
Q 007365 261 N------------QQLRELE------RGVDILVATPGRLVDLLERAR----VSLQ--MIRYLALDEADRMLDMGFEPQIR 316 (606)
Q Consensus 261 ~------------~~~~~l~------~~~~Ilv~Tp~~L~~~l~~~~----~~l~--~~~~lVlDEah~~~~~gf~~~i~ 316 (606)
. ....... ...+|+|+||++++..+.... ..+. ..++||+||+|.+.+..+.. +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 0 0001111 136799999999988776511 1122 23789999999998865444 66
Q ss_pred HHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEec--cchhhhHHHHHHHHHHh
Q 007365 317 KIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVH--ESDKRSHLMDLLHAQVA 394 (606)
Q Consensus 317 ~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~k~~~l~~ll~~~~~ 394 (606)
.++..+. ....|+++||||+|..+..++..+............ .......+.+.... ...+...+.+++....
T Consensus 146 ~~l~~l~---~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~- 220 (358)
T TIGR01587 146 AVLEVLK---DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-EERRFERHRFIKIESDKVGEISSLERLLEFIK- 220 (358)
T ss_pred HHHHHHH---HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-cccccccccceeeccccccCHHHHHHHHHHhh-
Confidence 6665553 345789999999998777776655432211111100 00001112221211 2234445555553321
Q ss_pred cccCCCCceEEEEEcchhhHHHHHHHHHhCCC--CcEEeeCccCHHHHHH----HHHhccCCCCcEEEEccccccCCCCC
Q 007365 395 NGVHGKQSLTLVFVETKKGADALEHWLYMNGF--PATTIHGDRTQQEREL----ALRSFKSGKTPILVATDVAARGLDIP 468 (606)
Q Consensus 395 ~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~----~l~~F~~g~~~iLVaT~v~~~GlDip 468 (606)
+..++||||++++.|+.+++.|++.+. .+..+||.+++.+|.+ +++.|++++.+|||||+++++||||+
T Consensus 221 -----~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 221 -----KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS 295 (358)
T ss_pred -----CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC
Confidence 267899999999999999999988765 4889999999999976 48999999999999999999999995
Q ss_pred CccEEEEecCCCCHhHHHHHhhccccCCCc----ceEEEEeccCCh
Q 007365 469 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKS----GLATAFFNENNL 510 (606)
Q Consensus 469 ~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~----G~~~~~~~~~~~ 510 (606)
+++||++..| +++|+||+||+||.|+. |.+++|....+.
T Consensus 296 -~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 296 -ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred -CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8899998877 78999999999998864 366777665444
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.9e-38 Score=365.30 Aligned_cols=296 Identities=20% Similarity=0.334 Sum_probs=225.2
Q ss_pred HHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHH
Q 007365 153 LNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTREL 232 (606)
Q Consensus 153 l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~L 232 (606)
+.+.+......+|+++|+.+++.++.++|++++||||||||+ |.+|++..+... ++++|||+||++|
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~------------g~~vLIL~PTreL 133 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK------------GKRCYIILPTTLL 133 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc------------CCeEEEEeCHHHH
Confidence 344444445568999999999999999999999999999997 667776554321 3569999999999
Q ss_pred HHHHHHHHHHhhhcCCcEEE---EEECCCChHHH---HHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEEecccc
Q 007365 233 SSQIHDEAKKFSYQTGVKVV---VAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 305 (606)
Q Consensus 233 a~Qi~~~~~~~~~~~~~~~~---~~~gg~~~~~~---~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~ 305 (606)
|.|+++.+++++...++++. +++|+.+..++ +..+.+ +++|||+||++|.+.+.... . .+++|||||||+
T Consensus 134 a~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~ 210 (1171)
T TIGR01054 134 VIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDA 210 (1171)
T ss_pred HHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHh
Confidence 99999999999877666543 45688776654 333444 48999999999998876522 2 899999999999
Q ss_pred ccc-----------CCCHHH-HHHHHHhcCC------------------CCCCCce--EEEEecc-ChHHHHHHHHHhhc
Q 007365 306 MLD-----------MGFEPQ-IRKIVQQMDM------------------PPPGVRQ--TMLFSAT-FPKEIQKLASDFLA 352 (606)
Q Consensus 306 ~~~-----------~gf~~~-i~~i~~~l~~------------------~~~~~~q--~ll~SAT-~~~~i~~l~~~~l~ 352 (606)
|++ +||.++ +..++..++. ..+..+| +++|||| +|..+.. .++.
T Consensus 211 ~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r 287 (1171)
T TIGR01054 211 LLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFR 287 (1171)
T ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcc
Confidence 998 788874 5665432210 0134444 5678999 5665432 2344
Q ss_pred CcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcch---hhHHHHHHHHHhCCCCcE
Q 007365 353 NYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETK---KGADALEHWLYMNGFPAT 429 (606)
Q Consensus 353 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~---~~~~~l~~~L~~~~~~~~ 429 (606)
+...+.+........++.+.+..... +...+.+++... ...+||||+++ +.|+.|++.|...++++.
T Consensus 288 ~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--------~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~ 357 (1171)
T TIGR01054 288 ELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--------GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAV 357 (1171)
T ss_pred cccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--------CCCEEEEEeccccHHHHHHHHHHHHhCCceEE
Confidence 55556666555556677777654432 244566665432 34589999999 999999999999999999
Q ss_pred EeeCccCHHHHHHHHHhccCCCCcEEEE----ccccccCCCCCC-ccEEEEecCCCC
Q 007365 430 TIHGDRTQQERELALRSFKSGKTPILVA----TDVAARGLDIPH-VAHVVNFDLPND 481 (606)
Q Consensus 430 ~lhg~~~~~~R~~~l~~F~~g~~~iLVa----T~v~~~GlDip~-v~~VI~~d~p~s 481 (606)
.+||+|++ .++++|++|+++|||| |++++||||||+ |++|||||+|..
T Consensus 358 ~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 358 AYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred EEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 99999973 6899999999999999 599999999999 899999999964
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.4e-37 Score=340.04 Aligned_cols=322 Identities=18% Similarity=0.220 Sum_probs=240.6
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|..+++.+++|+ |+.++||+|||++|++|++...+.. +.++|++||++||.|.++++..+
T Consensus 78 ~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G-------------~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 78 RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG-------------KGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC-------------CCeEEEeCCHHHHHHHHHHHHHH
Confidence 79999999999888876 9999999999999999998666543 34999999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhcc------ccccceeEEEEecccccc-cCC-----
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML-DMG----- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~~~-~~g----- 310 (606)
....++++.+++++.+...+.+ ....++|+|+||++| .++|.... ..+..+.++||||||.|+ |..
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 9999999999999988444433 345699999999999 56554422 246788999999999876 210
Q ss_pred ----------CHHHHHHHHHhcCCC-------------------------------------------------------
Q 007365 311 ----------FEPQIRKIVQQMDMP------------------------------------------------------- 325 (606)
Q Consensus 311 ----------f~~~i~~i~~~l~~~------------------------------------------------------- 325 (606)
+...+..++..+...
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 111122222222100
Q ss_pred ------------------------------------------CCCC----------------ceEEEEeccChHHHHHHH
Q 007365 326 ------------------------------------------PPGV----------------RQTMLFSATFPKEIQKLA 347 (606)
Q Consensus 326 ------------------------------------------~~~~----------------~q~ll~SAT~~~~i~~l~ 347 (606)
..+. ..+.+||.|...+-.++.
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~ 381 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFF 381 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHH
Confidence 0000 023345555433333333
Q ss_pred HHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCC
Q 007365 348 SDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFP 427 (606)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~ 427 (606)
+.|-.+ ++.+....+....-.....+.....|...+.+.+..... +..++||||+|++.++.|+..|...+++
T Consensus 382 ~~Y~l~--v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~-----~~~pvLIf~~t~~~se~l~~~L~~~gi~ 454 (790)
T PRK09200 382 EVYNME--VVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHE-----TGRPVLIGTGSIEQSETFSKLLDEAGIP 454 (790)
T ss_pred HHhCCc--EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHCCCC
Confidence 322222 222211111111111233456677888888888876432 3778999999999999999999999999
Q ss_pred cEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCC---CCcc-----EEEEecCCCCHhHHHHHhhccccCCCcc
Q 007365 428 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI---PHVA-----HVVNFDLPNDIDDYVHRIGRTGRAGKSG 499 (606)
Q Consensus 428 ~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDi---p~v~-----~VI~~d~p~s~~~y~QRiGR~gR~g~~G 499 (606)
+..||+++.+.++..+...++.| .|+|||++++||+|| |+|. |||+|++|.+.+.|+||+|||||.|++|
T Consensus 455 ~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G 532 (790)
T PRK09200 455 HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPG 532 (790)
T ss_pred EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCe
Confidence 99999999999999888888876 699999999999999 6998 9999999999999999999999999999
Q ss_pred eEEEEeccCCh
Q 007365 500 LATAFFNENNL 510 (606)
Q Consensus 500 ~~~~~~~~~~~ 510 (606)
.+++|++.+|.
T Consensus 533 ~s~~~is~eD~ 543 (790)
T PRK09200 533 SSQFFISLEDD 543 (790)
T ss_pred eEEEEEcchHH
Confidence 99999998665
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=9e-37 Score=334.38 Aligned_cols=325 Identities=17% Similarity=0.191 Sum_probs=237.2
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.++|+|.+++..+..+++.|++++||+|||++|++|++...+.. +.++||+|+++||.|+++++..+
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g-------------~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG-------------KGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC-------------CceEEeCCCHHHHHHHHHHHHHH
Confidence 35666666666666666689999999999999999987666532 23999999999999999999999
Q ss_pred hhcCCcEEEEEECCCC---hHHHHHHHhcCCcEEEecHHHH-HHHHHhc------cccccceeEEEEecccccccC-C--
Q 007365 244 SYQTGVKVVVAYGGAP---INQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRMLDM-G-- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~---~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~~~~~-g-- 310 (606)
....++++.+++++.. ...+.+....+|+|+|+||++| .+.|... ...+..+.++|+||||.|+-. .
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeart 214 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQT 214 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcC
Confidence 9889999988877632 2334445556899999999999 5655332 234678999999999997532 0
Q ss_pred -------------CHHHHHHHHHhcCCC----------------------------------------------------
Q 007365 311 -------------FEPQIRKIVQQMDMP---------------------------------------------------- 325 (606)
Q Consensus 311 -------------f~~~i~~i~~~l~~~---------------------------------------------------- 325 (606)
+...+..++..+...
T Consensus 215 pliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~ 294 (762)
T TIGR03714 215 PLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYL 294 (762)
T ss_pred CeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHH
Confidence 111111222222100
Q ss_pred ---------------------------------------------CCCC----------------ceEEEEeccChHHHH
Q 007365 326 ---------------------------------------------PPGV----------------RQTMLFSATFPKEIQ 344 (606)
Q Consensus 326 ---------------------------------------------~~~~----------------~q~ll~SAT~~~~i~ 344 (606)
.... .++.+||.|...+..
T Consensus 295 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~ 374 (762)
T TIGR03714 295 FKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEK 374 (762)
T ss_pred HhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHH
Confidence 0000 123456666544444
Q ss_pred HHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC
Q 007365 345 KLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN 424 (606)
Q Consensus 345 ~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~ 424 (606)
++.+.|--+ ++.+....+....-.....+.....|...+.+.+.+... +..++||||++++.++.|+..|...
T Consensus 375 Ef~~iY~l~--v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~-----~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 375 EFIETYSLS--VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHE-----TGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred HHHHHhCCC--EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhh-----CCCCEEEEECcHHHHHHHHHHHHHC
Confidence 444332222 222221111111112234566778888888888876543 3778999999999999999999999
Q ss_pred CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCC---------CccEEEEecCCCCHhHHHHHhhccccC
Q 007365 425 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP---------HVAHVVNFDLPNDIDDYVHRIGRTGRA 495 (606)
Q Consensus 425 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip---------~v~~VI~~d~p~s~~~y~QRiGR~gR~ 495 (606)
++++..+|+++.+.++..+...|+.| .|+|||++++||+||| .+.+|++|++|....+ +||+|||||.
T Consensus 448 gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRq 524 (762)
T TIGR03714 448 GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQ 524 (762)
T ss_pred CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCC
Confidence 99999999999999998888888877 6999999999999999 9999999999998777 9999999999
Q ss_pred CCcceEEEEeccCChh
Q 007365 496 GKSGLATAFFNENNLS 511 (606)
Q Consensus 496 g~~G~~~~~~~~~~~~ 511 (606)
|++|.++.|++.+|.-
T Consensus 525 G~~G~s~~~is~eD~l 540 (762)
T TIGR03714 525 GDPGSSQFFVSLEDDL 540 (762)
T ss_pred CCceeEEEEEccchhh
Confidence 9999999999986653
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=4.3e-36 Score=326.96 Aligned_cols=322 Identities=19% Similarity=0.217 Sum_probs=242.3
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|..+...++.|+ |+.++||+|||++|++|++...+... .++|++||++||.|.++++..+
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-------------~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK-------------GVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC-------------CEEEEcCCHHHHHHHHHHHHHH
Confidence 68999999988887776 99999999999999999965544321 2999999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhc------cccccceeEEEEeccccccc-CCCHH--
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRMLD-MGFEP-- 313 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~~~~-~gf~~-- 313 (606)
....++++.+++++.+...+.. ...++|+|+||++| +++|... .+.+..+.++|+||+|+|+- ....+
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~--~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERRE--AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHH--hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 9999999999999987654433 33589999999999 8888765 34678899999999998763 11000
Q ss_pred -------------HHHHHHHhcCCC-------------------------------------------------------
Q 007365 314 -------------QIRKIVQQMDMP------------------------------------------------------- 325 (606)
Q Consensus 314 -------------~i~~i~~~l~~~------------------------------------------------------- 325 (606)
....|...+...
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 011111111100
Q ss_pred ------------------------------------------CCCC----------------ceEEEEeccChHHHHHHH
Q 007365 326 ------------------------------------------PPGV----------------RQTMLFSATFPKEIQKLA 347 (606)
Q Consensus 326 ------------------------------------------~~~~----------------~q~ll~SAT~~~~i~~l~ 347 (606)
..+. ..+.+||.|...+...+.
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 358 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFE 358 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHH
Confidence 0000 123456666555444444
Q ss_pred HHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCC
Q 007365 348 SDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFP 427 (606)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~ 427 (606)
+.|-.+.+. +....+....-.....+....+|...+.+.+.+... +..++||||++++.++.|++.|...+++
T Consensus 359 ~iY~l~vv~--IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~-----~grpvLV~t~si~~se~ls~~L~~~gi~ 431 (745)
T TIGR00963 359 KIYNLEVVV--VPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHA-----KGQPVLVGTTSVEKSELLSNLLKERGIP 431 (745)
T ss_pred HHhCCCEEE--eCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 443333222 211111111111223445566777777777765543 3888999999999999999999999999
Q ss_pred cEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCC-------ccEEEEecCCCCHhHHHHHhhccccCCCcce
Q 007365 428 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPH-------VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 500 (606)
Q Consensus 428 ~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~-------v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~ 500 (606)
+..||++ +.+|+..+..|..+...|+|||++|+||+||+. .-|||++++|.|.+.|.||+|||||.|.+|.
T Consensus 432 ~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 432 HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 9999998 889999999999999999999999999999998 4599999999999999999999999999999
Q ss_pred EEEEeccCChh
Q 007365 501 ATAFFNENNLS 511 (606)
Q Consensus 501 ~~~~~~~~~~~ 511 (606)
+..|++.+|.-
T Consensus 510 s~~~ls~eD~l 520 (745)
T TIGR00963 510 SRFFLSLEDNL 520 (745)
T ss_pred eEEEEeccHHH
Confidence 99999987654
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.4e-35 Score=341.49 Aligned_cols=327 Identities=24% Similarity=0.290 Sum_probs=240.5
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
.++++||++++..++.+ ++|+++|||+|||+++++++...+... ..++|||+||++|+.|+++.+++
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~------------~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKK------------GGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhC------------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 47899999999888877 999999999999999998888766211 13599999999999999999999
Q ss_pred hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhc
Q 007365 243 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 243 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
+......++..++|+.+..+ ...+...++|+|+||+.+...+....+.+.++++||+||||++........+...+...
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred HhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 86544557777777766543 33445568999999999998888778889999999999999987543333333333222
Q ss_pred CCCCCCCceEEEEeccCh---HHHHHHHHHhhcCcEEEEeccc-------------------------------------
Q 007365 323 DMPPPGVRQTMLFSATFP---KEIQKLASDFLANYVFLAVGRV------------------------------------- 362 (606)
Q Consensus 323 ~~~~~~~~q~ll~SAT~~---~~i~~l~~~~l~~~~~~~~~~~------------------------------------- 362 (606)
....++++||||+. ..+..+++.+....+.+.....
T Consensus 160 ----~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 160 ----AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDR 235 (773)
T ss_pred ----CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 23567999999963 2222333322111110000000
Q ss_pred -------cCc---c------------CceeEE------------------------------------------------
Q 007365 363 -------GSS---T------------DLIVQR------------------------------------------------ 372 (606)
Q Consensus 363 -------~~~---~------------~~i~~~------------------------------------------------ 372 (606)
... . ..+.+.
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence 000 0 000000
Q ss_pred ------------------------EEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCc
Q 007365 373 ------------------------VEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPA 428 (606)
Q Consensus 373 ------------------------~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~ 428 (606)
........|...|.++|.+.... ....++||||++++.|+.|.++|...++.+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~---~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~ 392 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGK---NPDSRIIVFTQYRDTAEKIVDLLEKEGIKA 392 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhc---CCCCeEEEEeCcHHHHHHHHHHHHhCCCce
Confidence 00011233455555555554422 247789999999999999999999999999
Q ss_pred EEeeCc--------cCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcce
Q 007365 429 TTIHGD--------RTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 500 (606)
Q Consensus 429 ~~lhg~--------~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~ 500 (606)
..+||. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.+ +|.
T Consensus 393 ~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~ 471 (773)
T PRK13766 393 VRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGR 471 (773)
T ss_pred EEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCE
Confidence 999986 99999999999999999999999999999999999999999999999999999999999985 488
Q ss_pred EEEEeccCChh
Q 007365 501 ATAFFNENNLS 511 (606)
Q Consensus 501 ~~~~~~~~~~~ 511 (606)
++.|+.....+
T Consensus 472 v~~l~~~~t~e 482 (773)
T PRK13766 472 VVVLIAKGTRD 482 (773)
T ss_pred EEEEEeCCChH
Confidence 88888865543
No 69
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.9e-37 Score=311.79 Aligned_cols=345 Identities=22% Similarity=0.286 Sum_probs=279.6
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007365 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPI-SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~-i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
...++++++.+...++..++..+.|+|.-++.. +++|+|+++..+|+||||++.-++-+..++... .
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g------------~ 262 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG------------K 262 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC------------C
Confidence 467899999999999999999999999999986 789999999999999999999999888887643 2
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHH----HHhcCCcEEEecHHHHHHHHHhccccccceeE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLR----ELERGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~----~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
+.|+++|..+||+|.++.++.-...+++++.+-+|-.-++..-. .....+||||+|++-+..+|... ..+.++..
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGt 341 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGT 341 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccce
Confidence 49999999999999999999877788888877777554332211 11235799999999999988877 46999999
Q ss_pred EEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEec
Q 007365 298 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVH 377 (606)
Q Consensus 298 lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 377 (606)
||+||+|.+-+....+.+.-++..++.. -+..|.|.+|||+-+. +.+++.+-...+.+.- ..-.+..++.+..
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l-~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~ 414 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYL-FPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFAR 414 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHh-CCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeec
Confidence 9999999988877778888777776544 3478999999998554 3566665444443322 1222344444554
Q ss_pred -cchhhhHHHHHHHHHHhc-ccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEE
Q 007365 378 -ESDKRSHLMDLLHAQVAN-GVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPIL 455 (606)
Q Consensus 378 -~~~k~~~l~~ll~~~~~~-~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 455 (606)
+.+|...+..+.+..... ...+-.++||||++|++.|..|+++|...|+++.++|++|+..+|..+...|.++++.++
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~V 494 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAV 494 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceE
Confidence 788888888888766543 233446789999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEE---e-cCCCCHhHHHHHhhccccCCC--cceEEEEecc
Q 007365 456 VATDVAARGLDIPHVAHVVN---F-DLPNDIDDYVHRIGRTGRAGK--SGLATAFFNE 507 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~---~-d~p~s~~~y~QRiGR~gR~g~--~G~~~~~~~~ 507 (606)
|+|.+++.|+|+|.-.+++. + .-+-++.+|.|+.|||||.+- .|++++++.+
T Consensus 495 VTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 495 VTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred eehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 99999999999998665541 2 234589999999999999765 5899998865
No 70
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.6e-36 Score=343.11 Aligned_cols=305 Identities=19% Similarity=0.276 Sum_probs=215.3
Q ss_pred CHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccc----hHHHHHHHHHHH
Q 007365 166 TPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPT----RELSSQIHDEAK 241 (606)
Q Consensus 166 ~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Pt----r~La~Qi~~~~~ 241 (606)
..+..+.+..+..++.++++++||||||+ ++|.+...... .....++|+.|+ ++||.|+++++.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~----------g~~g~I~~TQPRRlAArsLA~RVA~El~ 143 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR----------GVKGLIGHTQPRRLAARTVANRIAEELE 143 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC----------CCCCceeeCCCcHHHHHHHHHHHHHHHh
Confidence 34455677778888899999999999999 57744322111 111236677784 578888888776
Q ss_pred H-hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEeccc-ccccCCCHHH-HHHH
Q 007365 242 K-FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQ-IRKI 318 (606)
Q Consensus 242 ~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~-i~~i 318 (606)
. +....++++ .- .. .....++|+|+|||+|++.+..... |+++++||||||| ++++++|... +..+
T Consensus 144 ~~lG~~VGY~v----rf---~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~l 212 (1294)
T PRK11131 144 TELGGCVGYKV----RF---ND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKEL 212 (1294)
T ss_pred hhhcceeceee----cC---cc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHh
Confidence 4 322222221 11 11 1234689999999999999987654 9999999999999 6899888653 3333
Q ss_pred HHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccc------hhhhHHHHHHHHH
Q 007365 319 VQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHES------DKRSHLMDLLHAQ 392 (606)
Q Consensus 319 ~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~~~ 392 (606)
+.. .++.|+|+||||++. +.+.+.|...++ +.+.... ..+...+..+... +....+++.+...
T Consensus 213 L~~-----rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l 281 (1294)
T PRK11131 213 LPR-----RPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDEL 281 (1294)
T ss_pred hhc-----CCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHH
Confidence 221 246799999999975 356666655554 3332211 2233334333221 1222333333222
Q ss_pred HhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCC---cEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCC
Q 007365 393 VANGVHGKQSLTLVFVETKKGADALEHWLYMNGFP---ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPH 469 (606)
Q Consensus 393 ~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~ 469 (606)
. ....+.+||||+++++++.+++.|...+++ +..+||+|++.+|..+++. .|..+|||||+++++|||||+
T Consensus 282 ~----~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpg 355 (1294)
T PRK11131 282 G----REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPG 355 (1294)
T ss_pred h----cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCc
Confidence 2 123577999999999999999999988765 5689999999999999986 478899999999999999999
Q ss_pred ccEEEEecC---------------C---CCHhHHHHHhhccccCCCcceEEEEeccCChh
Q 007365 470 VAHVVNFDL---------------P---NDIDDYVHRIGRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 470 v~~VI~~d~---------------p---~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~ 511 (606)
|++||++++ | .|.++|+||+|||||. .+|.||.||++.+..
T Consensus 356 I~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 356 IKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 999999863 3 4668999999999999 799999999976543
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=6.8e-35 Score=304.31 Aligned_cols=296 Identities=18% Similarity=0.188 Sum_probs=202.7
Q ss_pred HHHhHHHHHhcCCC--EEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhh
Q 007365 168 VQRHAIPISVAGRD--LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSY 245 (606)
Q Consensus 168 ~Q~~ai~~i~~~~d--~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~ 245 (606)
+|.++++.+.++.+ ++++||||||||.+|++|++.. . ..+|+++|+++|+.|+++.++.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~------------~~~~~~~P~~aL~~~~~~~~~~~~~ 64 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----E------------NDTIALYPTNALIEDQTEAIKEFVD 64 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----C------------CCEEEEeChHHHHHHHHHHHHHHHH
Confidence 59999999999864 7889999999999999998841 0 1289999999999999999998863
Q ss_pred c----CCcEEEEEECCCChH--HH----------------HHH--HhcCCcEEEecHHHHHHHHHhccc--------ccc
Q 007365 246 Q----TGVKVVVAYGGAPIN--QQ----------------LRE--LERGVDILVATPGRLVDLLERARV--------SLQ 293 (606)
Q Consensus 246 ~----~~~~~~~~~gg~~~~--~~----------------~~~--l~~~~~Ilv~Tp~~L~~~l~~~~~--------~l~ 293 (606)
. .++.+..+.|....+ .. .+. ....++|+++||+.|..++..... .+.
T Consensus 65 ~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 65 VFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred hcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 2 245555555542211 00 010 123578999999999876653211 257
Q ss_pred ceeEEEEecccccccCCC-----HHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHh--hcCcEEEEecc-----
Q 007365 294 MIRYLALDEADRMLDMGF-----EPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDF--LANYVFLAVGR----- 361 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~gf-----~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~--l~~~~~~~~~~----- 361 (606)
++++||+||+|.+..... ...+..++... ....+++++|||++..+...+... +..++....+.
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~ 220 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF----ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFP 220 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhh----hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccC
Confidence 899999999998764331 11222333322 123589999999999877777664 33333222222
Q ss_pred c------cC-------ccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCC--C
Q 007365 362 V------GS-------STDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNG--F 426 (606)
Q Consensus 362 ~------~~-------~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~--~ 426 (606)
. .. ....+.+.+.. ....|...+..++.............++||||++++.++.+++.|+..+ +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~ 299 (357)
T TIGR03158 221 DNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGD 299 (357)
T ss_pred CChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCc
Confidence 0 00 00233333333 3334444444444333221111235689999999999999999998764 5
Q ss_pred CcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccc
Q 007365 427 PATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 493 (606)
Q Consensus 427 ~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~g 493 (606)
.+..+||.+++.+|++++ +..|||||+++++|||||.+ +|| ++ |.+.++|+||+||+|
T Consensus 300 ~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 300 DIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred eEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 788899999999997654 67899999999999999987 666 55 899999999999996
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=5.4e-35 Score=314.12 Aligned_cols=336 Identities=23% Similarity=0.284 Sum_probs=234.2
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEcc
Q 007365 149 LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAP 228 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~P 228 (606)
+++.....+.--....++.||.+.+..++ ++++||++|||+|||.++...++.++..... -++|+++|
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----------~KiVF~aP 114 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----------GKVVFLAP 114 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----------ceEEEeeC
Confidence 33443333333345579999999998888 9999999999999999988888877754321 24999999
Q ss_pred chHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc-cccceeEEEEecccccc
Q 007365 229 TRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRML 307 (606)
Q Consensus 229 tr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~~~ 307 (606)
|+-|+.|....+..++.. ..+....++.........+-...+|+|+||+.|.+.|..... .|+.+.++|+||||+-.
T Consensus 115 ~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~ 192 (746)
T KOG0354|consen 115 TRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTS 192 (746)
T ss_pred CchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccc
Confidence 999999999777777644 445555555332222235555689999999999998877654 36899999999999976
Q ss_pred cCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHh------------------------------------
Q 007365 308 DMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDF------------------------------------ 350 (606)
Q Consensus 308 ~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~------------------------------------ 350 (606)
... +...++..+..- ....|+|++|||+-.+.+.+....
T Consensus 193 kn~~Y~~Vmr~~l~~k----~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 193 KNHPYNNIMREYLDLK----NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred ccccHHHHHHHHHHhh----hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 544 444444544443 222399999999754322221111
Q ss_pred --------------hcC-----cEEEE----------eccccCccCc--eeEE--------------------EE-----
Q 007365 351 --------------LAN-----YVFLA----------VGRVGSSTDL--IVQR--------------------VE----- 374 (606)
Q Consensus 351 --------------l~~-----~~~~~----------~~~~~~~~~~--i~~~--------------------~~----- 374 (606)
+.. ...+. +......... -.+. +.
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l 348 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDAL 348 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHH
Confidence 000 00000 0000000000 0000 00
Q ss_pred ---------------------------------------Ee--ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhh
Q 007365 375 ---------------------------------------YV--HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKG 413 (606)
Q Consensus 375 ---------------------------------------~~--~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~ 413 (606)
.. ....|++.+.+.+.+... ..+..++||||.++..
T Consensus 349 ~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~---~~~dsR~IIFve~R~s 425 (746)
T KOG0354|consen 349 DYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE---QNPDSRTIIFVETRES 425 (746)
T ss_pred hhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh---cCCCccEEEEEehHHH
Confidence 00 013344555555555443 4567889999999999
Q ss_pred HHHHHHHHHh---CCCCcEEee--------CccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCH
Q 007365 414 ADALEHWLYM---NGFPATTIH--------GDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDI 482 (606)
Q Consensus 414 ~~~l~~~L~~---~~~~~~~lh--------g~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~ 482 (606)
|+.|..+|.. .+++...+- .+|+|.++.++++.|++|..+|||||+|+++||||+.|+.||.||...|+
T Consensus 426 a~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snp 505 (746)
T KOG0354|consen 426 ALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNP 505 (746)
T ss_pred HHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccH
Confidence 9999999873 233444333 37999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccccCCCcceEEEEecc
Q 007365 483 DDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 483 ~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
..++||+|| ||+ +.|.|+++++.
T Consensus 506 IrmIQrrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 506 IRMVQRRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred HHHHHHhcc-ccc-cCCeEEEEEcc
Confidence 999999999 999 77999999984
No 73
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=328.26 Aligned_cols=336 Identities=21% Similarity=0.298 Sum_probs=256.4
Q ss_pred CCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEE
Q 007365 147 IDLGEELNLNIRRCKYVKPTPVQRHAIPISVA-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALI 225 (606)
Q Consensus 147 ~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~-~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Li 225 (606)
..+++.+.+.++..++.++.+.|++++..... ++|+|||+|||||||+.+++.|+..+.+.. -++|+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~------------~k~vY 81 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG------------GKVVY 81 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC------------CcEEE
Confidence 34677888888888888899999999976544 599999999999999999999999988752 13999
Q ss_pred EccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccc
Q 007365 226 LAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 305 (606)
Q Consensus 226 l~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~ 305 (606)
|||+++||.++++++++| ...++++...+|+.....+ ...+++|||+||++|..++.+....+..+++||+||+|.
T Consensus 82 ivPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~ 157 (766)
T COG1204 82 IVPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL 157 (766)
T ss_pred EeChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee
Confidence 999999999999999944 4569999999998874442 223589999999999999988877788999999999999
Q ss_pred cccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc-CcEEEEeccccCccC-ceeEEEEEeccch---
Q 007365 306 MLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA-NYVFLAVGRVGSSTD-LIVQRVEYVHESD--- 380 (606)
Q Consensus 306 ~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~-~~~~~~~~~~~~~~~-~i~~~~~~~~~~~--- 380 (606)
+.+....+.++.|+..+.... ...|++.+|||+|+.. .++ .|+. ++............. ...+.+.......
T Consensus 158 l~d~~RG~~lE~iv~r~~~~~-~~~rivgLSATlpN~~-evA-~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~ 234 (766)
T COG1204 158 LGDRTRGPVLESIVARMRRLN-ELIRIVGLSATLPNAE-EVA-DWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTW 234 (766)
T ss_pred cCCcccCceehhHHHHHHhhC-cceEEEEEeeecCCHH-HHH-HHhCCcccccCCCCcccccCCccceEEEEecCccccc
Confidence 998877888888888775442 2379999999999853 333 4444 322111111111111 1223333333222
Q ss_pred ---hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC---------------------------------
Q 007365 381 ---KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN--------------------------------- 424 (606)
Q Consensus 381 ---k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--------------------------------- 424 (606)
+...+++++...... .+++||||++++.+...++.|...
T Consensus 235 ~~~~~~~~~~~v~~~~~~-----~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l 309 (766)
T COG1204 235 PLLIDNLALELVLESLAE-----GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEEL 309 (766)
T ss_pred cccchHHHHHHHHHHHhc-----CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHH
Confidence 234555555555543 778999999999999888888620
Q ss_pred ----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEE----Eec-----CCCCHhHHHHHhhc
Q 007365 425 ----GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVV----NFD-----LPNDIDDYVHRIGR 491 (606)
Q Consensus 425 ----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI----~~d-----~p~s~~~y~QRiGR 491 (606)
...+..+|++++..+|..+.+.|+.|.++|||||..++.|+|.|.-.+|| .|+ .+-++-+|+|++||
T Consensus 310 ~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GR 389 (766)
T COG1204 310 AELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGR 389 (766)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCc
Confidence 12345689999999999999999999999999999999999999977777 566 45678999999999
Q ss_pred cccCCCc--ceEEEEec
Q 007365 492 TGRAGKS--GLATAFFN 506 (606)
Q Consensus 492 ~gR~g~~--G~~~~~~~ 506 (606)
|||.|-. |.++++.+
T Consensus 390 AGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 390 AGRPGYDDYGEAIILAT 406 (766)
T ss_pred CCCCCcCCCCcEEEEec
Confidence 9998764 56666663
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-34 Score=315.30 Aligned_cols=308 Identities=16% Similarity=0.160 Sum_probs=211.5
Q ss_pred CCCCHHHHhHHHHHhcC---CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAG---RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~---~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
..|+|||++++..+..+ +..++++|||+|||++.+..+. .+. . .+|||||+.+|+.||.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~-k--------------~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVK-K--------------SCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhC-C--------------CEEEEeCcHHHHHHHHHH
Confidence 46999999999988753 4789999999999998765443 221 1 299999999999999999
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc--------cccccceeEEEEecccccccCCC
Q 007365 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--------RVSLQMIRYLALDEADRMLDMGF 311 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~--------~~~l~~~~~lVlDEah~~~~~gf 311 (606)
+.+|.......+..++++.... ......|+|+|+..+.....+. .+.-..+.+||+||||++..
T Consensus 318 f~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--- 389 (732)
T TIGR00603 318 FKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--- 389 (732)
T ss_pred HHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---
Confidence 9998654445566655543211 1123689999999885432211 12234688999999999854
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEeccChHHHHH--HHHHhhcCcEEEEeccccCccCc----eeEEEEEe---------
Q 007365 312 EPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQK--LASDFLANYVFLAVGRVGSSTDL----IVQRVEYV--------- 376 (606)
Q Consensus 312 ~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~--l~~~~l~~~~~~~~~~~~~~~~~----i~~~~~~~--------- 376 (606)
+.+..++..+. ....|+||||+..+-.. .+.. +..+..+.+......... +....+.+
T Consensus 390 -~~fr~il~~l~-----a~~RLGLTATP~ReD~~~~~L~~-LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~ 462 (732)
T TIGR00603 390 -AMFRRVLTIVQ-----AHCKLGLTATLVREDDKITDLNF-LIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE 462 (732)
T ss_pred -HHHHHHHHhcC-----cCcEEEEeecCcccCCchhhhhh-hcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHH
Confidence 55666766652 23579999998543211 1112 222322222111111110 00000111
Q ss_pred --------------ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHH
Q 007365 377 --------------HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 442 (606)
Q Consensus 377 --------------~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 442 (606)
....|...+..++.... ....++||||.+.+.++.+++.|. +..|||++++.+|+.
T Consensus 463 yl~~~~~~k~~l~~~np~K~~~~~~Li~~he-----~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 463 YLRENSRKRMLLYVMNPNKFRACQFLIRFHE-----QRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQ 532 (732)
T ss_pred HHHhcchhhhHHhhhChHHHHHHHHHHHHHh-----hcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHH
Confidence 11223333333333221 237789999999999999988772 456999999999999
Q ss_pred HHHhccCC-CCcEEEEccccccCCCCCCccEEEEecCC-CCHhHHHHHhhccccCCCcceE-------EEEeccCChh
Q 007365 443 ALRSFKSG-KTPILVATDVAARGLDIPHVAHVVNFDLP-NDIDDYVHRIGRTGRAGKSGLA-------TAFFNENNLS 511 (606)
Q Consensus 443 ~l~~F~~g-~~~iLVaT~v~~~GlDip~v~~VI~~d~p-~s~~~y~QRiGR~gR~g~~G~~-------~~~~~~~~~~ 511 (606)
+++.|+.+ .+++||+|+++.+|||+|++++||+++.| .|..+|+||+||++|.+..+.+ |.|++.+..+
T Consensus 533 il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 533 ILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 99999875 88999999999999999999999999998 4999999999999999776664 7777765443
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-34 Score=285.47 Aligned_cols=338 Identities=19% Similarity=0.294 Sum_probs=247.3
Q ss_pred HHHHHh-CCCCC-CCHHHHhHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccch
Q 007365 154 NLNIRR-CKYVK-PTPVQRHAIPISVAG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTR 230 (606)
Q Consensus 154 ~~~l~~-~~~~~-p~~~Q~~ai~~i~~~-~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr 230 (606)
.+.|++ +++.+ -++.|++|+..+..+ +|+.+++|||+||+++|.+|.|-+ . -..||++|..
T Consensus 8 reaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~-------------gITIV~SPLi 71 (641)
T KOG0352|consen 8 REALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---G-------------GITIVISPLI 71 (641)
T ss_pred HHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---C-------------CeEEEehHHH
Confidence 344433 24433 478999999987665 899999999999999999998732 1 1489999999
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEECCCChHHH---HHHHhc---CCcEEEecHHHHH-----HHHHhccccccceeEEE
Q 007365 231 ELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER---GVDILVATPGRLV-----DLLERARVSLQMIRYLA 299 (606)
Q Consensus 231 ~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~---~~~Ilv~Tp~~L~-----~~l~~~~~~l~~~~~lV 299 (606)
+|+....+.+.++ .+++..+..-.+..+. +..|.+ ...||+.||+... ++|+ ...+-..++|||
T Consensus 72 ALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~v 146 (641)
T KOG0352|consen 72 ALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIV 146 (641)
T ss_pred HHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEE
Confidence 9999988888886 4444444433333322 333332 4679999998742 2222 223445688999
Q ss_pred EecccccccCC--CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHh--hcCcEEEEeccccCccCceeEEEEE
Q 007365 300 LDEADRMLDMG--FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDF--LANYVFLAVGRVGSSTDLIVQRVEY 375 (606)
Q Consensus 300 lDEah~~~~~g--f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~--l~~~~~~~~~~~~~~~~~i~~~~~~ 375 (606)
+||||+..+|| |++++.++-..-.. -+...-+.++||...++++.+-.- |.+|+-+.- ......++...+.+
T Consensus 147 VDEAHCVSQWGHDFRPDYL~LG~LRS~--~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk--TP~FR~NLFYD~~~ 222 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPDYLTLGSLRSV--CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK--TPTFRDNLFYDNHM 222 (641)
T ss_pred echhhhHhhhccccCcchhhhhhHHhh--CCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc--CcchhhhhhHHHHH
Confidence 99999999987 88988877543311 134457899999999888766544 345543321 11111111100000
Q ss_pred e-ccchhhhHHHHHHHHHHhc------ccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhcc
Q 007365 376 V-HESDKRSHLMDLLHAQVAN------GVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFK 448 (606)
Q Consensus 376 ~-~~~~k~~~l~~ll~~~~~~------~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~ 448 (606)
- .-.+-...|.++....+-+ ......+..||||.|++.|+.++-.|...|+++..+|.++...||.++.+.|.
T Consensus 223 K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 223 KSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred HHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh
Confidence 0 0123344455554443321 12233567899999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHH
Q 007365 449 SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPL 516 (606)
Q Consensus 449 ~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l 516 (606)
+++.+||+||..+.+|+|-|+|.+|||+++|.|++-|.|-.||+||.|....|-++|+.+|...+.-|
T Consensus 303 ~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 303 NNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred cCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988766544
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=6.7e-33 Score=313.62 Aligned_cols=338 Identities=24% Similarity=0.327 Sum_probs=260.2
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEcc
Q 007365 149 LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAP 228 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~P 228 (606)
....+..++...++..|+++|.+|+..+.+++++||+.+||||||.+|++||++++++.... ++|+|.|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----------~AL~lYP 123 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----------RALLLYP 123 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----------cEEEEec
Confidence 34455778888888899999999999999999999999999999999999999999987532 4899999
Q ss_pred chHHHHHHHHHHHHhhhcCC--cEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc----cccccceeEEEEec
Q 007365 229 TRELSSQIHDEAKKFSYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIRYLALDE 302 (606)
Q Consensus 229 tr~La~Qi~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~----~~~l~~~~~lVlDE 302 (606)
|++||+.+.+.++++....+ +++..+.|.....+....+...++||++||.+|..++.+. ...+++++|||+||
T Consensus 124 tnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 124 TNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred hhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 99999999999999987766 7777766666655554667778999999999999866443 23577899999999
Q ss_pred ccccccCCCHHHH----HHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEec-
Q 007365 303 ADRMLDMGFEPQI----RKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVH- 377 (606)
Q Consensus 303 ah~~~~~gf~~~i----~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~- 377 (606)
+|..-- -|...+ +++...+... +...|+|+.|||+...- ..++.+........+............ +...+
T Consensus 204 lHtYrG-v~GS~vA~llRRL~~~~~~~-~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~~~g~~~~~~~~-~~~~p~ 279 (851)
T COG1205 204 LHTYRG-VQGSEVALLLRRLLRRLRRY-GSPLQIICTSATLANPG-EFAEELFGRDFEVPVDEDGSPRGLRYF-VRREPP 279 (851)
T ss_pred ceeccc-cchhHHHHHHHHHHHHHhcc-CCCceEEEEeccccChH-HHHHHhcCCcceeeccCCCCCCCceEE-EEeCCc
Confidence 996432 244444 4444444332 46789999999986653 455555544433334333333333222 22222
Q ss_pred --------cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHH----HHHHhCC----CCcEEeeCccCHHHHH
Q 007365 378 --------ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALE----HWLYMNG----FPATTIHGDRTQQERE 441 (606)
Q Consensus 378 --------~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~----~~L~~~~----~~~~~lhg~~~~~~R~ 441 (606)
...+...+..++.....+ .-++|||+.++..++.+. ..+...+ ..+..++++|...+|.
T Consensus 280 ~~~~~~~~r~s~~~~~~~~~~~~~~~-----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~ 354 (851)
T COG1205 280 IRELAESIRRSALAELATLAALLVRN-----GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERR 354 (851)
T ss_pred chhhhhhcccchHHHHHHHHHHHHHc-----CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHH
Confidence 124444455555555443 678999999999999987 4444444 5678899999999999
Q ss_pred HHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCC-CHhHHHHHhhccccCCCcceEEEEec
Q 007365 442 LALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFN 506 (606)
Q Consensus 442 ~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QRiGR~gR~g~~G~~~~~~~ 506 (606)
++...|+.|+..++++|+.++-||||-+++.||.+..|. +..+++||.||+||.++....+....
T Consensus 355 ~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 355 RIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred HHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 999999999999999999999999999999999999999 89999999999999987776666665
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-33 Score=317.79 Aligned_cols=337 Identities=21% Similarity=0.288 Sum_probs=260.2
Q ss_pred HHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchH
Q 007365 152 ELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRE 231 (606)
Q Consensus 152 ~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~ 231 (606)
.+......++....+|-|.++|..++.|+|+++.+|||.||+++|.+|++-. .+..|||+|...
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----------------~gitvVISPL~S 315 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----------------GGVTVVISPLIS 315 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----------------CCceEEeccHHH
Confidence 4444556778889999999999999999999999999999999999998621 125999999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHH---HHhc---CCcEEEecHHHHHHH--HHhccccccc---eeEEEE
Q 007365 232 LSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLR---ELER---GVDILVATPGRLVDL--LERARVSLQM---IRYLAL 300 (606)
Q Consensus 232 La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ilv~Tp~~L~~~--l~~~~~~l~~---~~~lVl 300 (606)
|.+.+...+.. .+++...+.++....++.. .+.. .++|++.||+.+... +......|.. +.++|+
T Consensus 316 Lm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 316 LMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI 391 (941)
T ss_pred HHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEe
Confidence 97775555533 4788888888877664433 3333 479999999998532 2222223444 889999
Q ss_pred ecccccccCC--CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc--CcEEEEeccccCccCceeEEEEEe
Q 007365 301 DEADRMLDMG--FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA--NYVFLAVGRVGSSTDLIVQRVEYV 376 (606)
Q Consensus 301 DEah~~~~~g--f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~--~~~~~~~~~~~~~~~~i~~~~~~~ 376 (606)
||||+...|+ |++.++++.......+ ...+|.+|||....++.-+-..|. ++..+ ......+++.- .+.
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~l~~~~~--~vP~iALTATAT~~v~~DIi~~L~l~~~~~~---~~sfnR~NL~y--eV~ 464 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGLLRIRFP--GVPFIALTATATERVREDVIRSLGLRNPELF---KSSFNRPNLKY--EVS 464 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHHHHhhCC--CCCeEEeehhccHHHHHHHHHHhCCCCccee---cccCCCCCceE--EEE
Confidence 9999999987 9999988766553322 267999999998888776666554 33322 11222233332 222
Q ss_pred ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE
Q 007365 377 HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 456 (606)
Q Consensus 377 ~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 456 (606)
.+..+ ..+..++..... ......+||||.++++|+.++..|+..++.+..||++|+..+|+.+.++|..++++|+|
T Consensus 465 ~k~~~-~~~~~~~~~~~~---~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~Viv 540 (941)
T KOG0351|consen 465 PKTDK-DALLDILEESKL---RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIV 540 (941)
T ss_pred eccCc-cchHHHHHHhhh---cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEE
Confidence 22211 222222222221 22477799999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHH
Q 007365 457 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAEL 519 (606)
Q Consensus 457 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~ 519 (606)
||=++..|||.|+|+.||||.+|.+++.|+|-+|||||.|....|++|+...|...++.++.-
T Consensus 541 ATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 541 ATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred EEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999988777766543
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.8e-33 Score=322.27 Aligned_cols=305 Identities=18% Similarity=0.247 Sum_probs=217.4
Q ss_pred HhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCc
Q 007365 170 RHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGV 249 (606)
Q Consensus 170 ~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~ 249 (606)
.+.+..+..++.+|++|+||||||+ .+|.+..-... .....++++.|+|.-|..++..+.+.. +.
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~----------~~~~~I~~tQPRRlAA~svA~RvA~el---g~ 137 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR----------GSHGLIGHTQPRRLAARTVAQRIAEEL---GT 137 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC----------CCCceEecCCccHHHHHHHHHHHHHHh---CC
Confidence 3566677778899999999999999 56754321110 112358889999998888887766543 33
Q ss_pred EEEEEECCCC-hHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEeccc-ccccCCCHHH-HHHHHHhcCCCC
Q 007365 250 KVVVAYGGAP-INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQ-IRKIVQQMDMPP 326 (606)
Q Consensus 250 ~~~~~~gg~~-~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~-i~~i~~~l~~~~ 326 (606)
.+...+|... ... .....+.|+|+|+|+|+..+.... .|..+++||||||| ++++.+|... +..++..
T Consensus 138 ~lG~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~----- 208 (1283)
T TIGR01967 138 PLGEKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR----- 208 (1283)
T ss_pred CcceEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-----
Confidence 3333333211 111 123457899999999999998765 48999999999999 6999887765 4555433
Q ss_pred CCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEecc------chhhhHHHHHHHHHHhcccCCC
Q 007365 327 PGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHE------SDKRSHLMDLLHAQVANGVHGK 400 (606)
Q Consensus 327 ~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~~~~~~~~~~~ 400 (606)
.++.|+|+||||++. ..+.+.|...+++...++. ..+...|..... .++...+.+.+...... .
T Consensus 209 rpdLKlIlmSATld~--~~fa~~F~~apvI~V~Gr~----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~----~ 278 (1283)
T TIGR01967 209 RPDLKIIITSATIDP--ERFSRHFNNAPIIEVSGRT----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE----G 278 (1283)
T ss_pred CCCCeEEEEeCCcCH--HHHHHHhcCCCEEEECCCc----ccceeEEecccccccchhhhHHHHHHHHHHHHHhh----C
Confidence 246799999999975 4666666555543322221 112222222211 12334455555544322 2
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCC---CcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEec
Q 007365 401 QSLTLVFVETKKGADALEHWLYMNGF---PATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFD 477 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d 477 (606)
.+.+|||++++.+++.+++.|...++ .+..+||+|++.+|..+++.+. ..+|||||+++++|||||+|++||+++
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rkIVLATNIAEtSLTIpgV~yVIDsG 356 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GRRIVLATNVAETSLTVPGIHYVIDTG 356 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--CceEEEeccHHHhccccCCeeEEEeCC
Confidence 56799999999999999999987644 4788999999999999987652 478999999999999999999999998
Q ss_pred CC------------------CCHhHHHHHhhccccCCCcceEEEEeccCChh
Q 007365 478 LP------------------NDIDDYVHRIGRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 478 ~p------------------~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~ 511 (606)
++ .|.++|+||.|||||.+ +|.||.||++.+..
T Consensus 357 l~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 357 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 54 36789999999999996 99999999976543
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=7.5e-31 Score=293.80 Aligned_cols=317 Identities=21% Similarity=0.224 Sum_probs=220.8
Q ss_pred CCCCHHHHhHHHHHhcC---CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAG---RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~---~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
..||++|+++++.+..+ +++++.++||||||.+|+.++...+... .++|||+||++|+.|+++.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-------------~~vLvLvPt~~L~~Q~~~~ 209 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-------------KQALVLVPEIALTPQMLAR 209 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-------------CeEEEEeCcHHHHHHHHHH
Confidence 36999999999999874 8899999999999999988876655432 3499999999999999999
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHH---HHh-cCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCC---H
Q 007365 240 AKKFSYQTGVKVVVAYGGAPINQQLR---ELE-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGF---E 312 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf---~ 312 (606)
+++.. +.++.+++++.+..++.. .+. ..++|+|+|++.+. ..+.++.+||+||+|....... .
T Consensus 210 l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~ 279 (679)
T PRK05580 210 FRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPR 279 (679)
T ss_pred HHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCC
Confidence 98753 578888899887654433 333 34799999998864 3578899999999997653221 1
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccc-------hhhhHH
Q 007365 313 PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHES-------DKRSHL 385 (606)
Q Consensus 313 ~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~k~~~l 385 (606)
-..+.+..... .....++|++|||++.+....+.. ..+..+...............+...... .-...+
T Consensus 280 y~~r~va~~ra--~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l 355 (679)
T PRK05580 280 YHARDLAVVRA--KLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPL 355 (679)
T ss_pred CcHHHHHHHHh--hccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHH
Confidence 11222221111 035678999999987665554432 2233333322211111111111111110 012345
Q ss_pred HHHHHHHHhcccCCCCceEEEEEcch------------------------------------------------------
Q 007365 386 MDLLHAQVANGVHGKQSLTLVFVETK------------------------------------------------------ 411 (606)
Q Consensus 386 ~~ll~~~~~~~~~~~~~~~LVF~~s~------------------------------------------------------ 411 (606)
++.+.+.+.. ..++|||+|.+
T Consensus 356 ~~~i~~~l~~-----g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 356 LEAIKQRLER-----GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred HHHHHHHHHc-----CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 5666665543 55788887752
Q ss_pred ------hhHHHHHHHHHhC--CCCcEEeeCccCH--HHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEe--cCC
Q 007365 412 ------KGADALEHWLYMN--GFPATTIHGDRTQ--QERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNF--DLP 479 (606)
Q Consensus 412 ------~~~~~l~~~L~~~--~~~~~~lhg~~~~--~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~--d~p 479 (606)
..++.+++.|... +.++..+|+++++ .++++++++|++|+.+|||+|+++++|+|+|+|++|+.+ |.+
T Consensus 431 ~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~ 510 (679)
T PRK05580 431 DLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLG 510 (679)
T ss_pred eeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchh
Confidence 1456777778775 7889999999874 679999999999999999999999999999999998655 444
Q ss_pred CCH----------hHHHHHhhccccCCCcceEEEEeccCChh
Q 007365 480 NDI----------DDYVHRIGRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 480 ~s~----------~~y~QRiGR~gR~g~~G~~~~~~~~~~~~ 511 (606)
.+. ..|+|++||+||.+..|.+++.....+..
T Consensus 511 l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~ 552 (679)
T PRK05580 511 LFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHP 552 (679)
T ss_pred ccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCH
Confidence 333 57899999999999999998776544433
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.9e-31 Score=300.86 Aligned_cols=320 Identities=18% Similarity=0.179 Sum_probs=205.0
Q ss_pred CCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
.|.|||.+++..++.. ..+|+..++|.|||+.+.+.+-..+... ... ++|||||+ .|..||..++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~----------rvLIVvP~-sL~~QW~~El~ 219 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAE----------RVLILVPE-TLQHQWLVEML 219 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCC----------cEEEEcCH-HHHHHHHHHHH
Confidence 5999999999777654 4789999999999998765554433322 111 39999997 79999999996
Q ss_pred HhhhcCCcEEEEEECCCChHHHHH---HHhcCCcEEEecHHHHHHHHH-hccccccceeEEEEecccccccCC-CHHHHH
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLR---ELERGVDILVATPGRLVDLLE-RARVSLQMIRYLALDEADRMLDMG-FEPQIR 316 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~Ilv~Tp~~L~~~l~-~~~~~l~~~~~lVlDEah~~~~~g-f~~~i~ 316 (606)
+.. ++...++.+... ..... ......+++|+|++.|...-. ...+.-..+++||+||||++.... -.....
T Consensus 220 ~kF---~l~~~i~~~~~~-~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 220 RRF---NLRFSLFDEERY-AEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HHh---CCCeEEEcCcch-hhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 532 344443332221 11000 011236899999998864211 112223468999999999986321 111112
Q ss_pred HHHHhcCCCCCCCceEEEEeccChH----HHH----------------------------HHHHHhhcCc----------
Q 007365 317 KIVQQMDMPPPGVRQTMLFSATFPK----EIQ----------------------------KLASDFLANY---------- 354 (606)
Q Consensus 317 ~i~~~l~~~~~~~~q~ll~SAT~~~----~i~----------------------------~l~~~~l~~~---------- 354 (606)
+.+..+. .....++++|||+.. +.. .++..++.+.
T Consensus 296 ~~v~~La---~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l 372 (956)
T PRK04914 296 QVVEQLA---EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNAL 372 (956)
T ss_pred HHHHHHh---hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3333331 223468999999531 000 0011111000
Q ss_pred ------------------------------------------EEEEeccc--cCccCceeEEEEE---------------
Q 007365 355 ------------------------------------------VFLAVGRV--GSSTDLIVQRVEY--------------- 375 (606)
Q Consensus 355 ------------------------------------------~~~~~~~~--~~~~~~i~~~~~~--------------- 375 (606)
+.+...+. ........+.+..
T Consensus 373 ~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~ 452 (956)
T PRK04914 373 GELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLE 452 (956)
T ss_pred HHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHH
Confidence 00000000 0000000011100
Q ss_pred ----------------------eccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHH-HhCCCCcEEee
Q 007365 376 ----------------------VHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWL-YMNGFPATTIH 432 (606)
Q Consensus 376 ----------------------~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L-~~~~~~~~~lh 432 (606)
.....|...|+++++. ....|+||||+++..++.|++.| ...++++..||
T Consensus 453 ~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~-------~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ih 525 (956)
T PRK04914 453 ARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKS-------HRSEKVLVICAKAATALQLEQALREREGIRAAVFH 525 (956)
T ss_pred HHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHh-------cCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEE
Confidence 0001122223333322 12678999999999999999999 46799999999
Q ss_pred CccCHHHHHHHHHhccCC--CCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCC
Q 007365 433 GDRTQQERELALRSFKSG--KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN 509 (606)
Q Consensus 433 g~~~~~~R~~~l~~F~~g--~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~ 509 (606)
|+|++.+|+++++.|+++ ..+|||||+++++|+|++.+++|||||+|+|++.|+|||||++|.|+++.+.+++....
T Consensus 526 G~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 526 EGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred CCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 999999999999999974 59999999999999999999999999999999999999999999999998776665433
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.4e-30 Score=276.30 Aligned_cols=337 Identities=21% Similarity=0.296 Sum_probs=255.8
Q ss_pred HHHHHHH-HhCCCCCCCHHHHhHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEE
Q 007365 151 EELNLNI-RRCKYVKPTPVQRHAIPISVAG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLA 223 (606)
Q Consensus 151 ~~l~~~l-~~~~~~~p~~~Q~~ai~~i~~~------~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~ 223 (606)
..+.+.+ ....| +||..|++++..|... .+-++++..|||||++++++++..+... .++
T Consensus 249 ~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-------------~Q~ 314 (677)
T COG1200 249 GELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-------------YQA 314 (677)
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-------------Cee
Confidence 3333333 33344 7999999999988764 4569999999999999999999877543 359
Q ss_pred EEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHH---HHHHHhcC-CcEEEecHHHHHHHHHhccccccceeEEE
Q 007365 224 LILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQ---QLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLA 299 (606)
Q Consensus 224 Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~-~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lV 299 (606)
.+++||-.||.|.++.+.++....++++..++|...-+. ....+..+ .+|+|+| ..|.+..+.+.++.++|
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVI 389 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVI 389 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEE
Confidence 999999999999999999999999999999998765433 33445555 8999999 44555577899999999
Q ss_pred EecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccc
Q 007365 300 LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHES 379 (606)
Q Consensus 300 lDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 379 (606)
+||-|| |.-.-+..+..... ..+.+++||||+=+. .++-....+...-.+.....-...|..... ..
T Consensus 390 iDEQHR-----FGV~QR~~L~~KG~---~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i---~~ 456 (677)
T COG1200 390 IDEQHR-----FGVHQRLALREKGE---QNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVI---PH 456 (677)
T ss_pred Eecccc-----ccHHHHHHHHHhCC---CCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEe---cc
Confidence 999999 55555555555421 145689999996432 334444444443334444443344443322 34
Q ss_pred hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhh--------HHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhccC
Q 007365 380 DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKG--------ADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKS 449 (606)
Q Consensus 380 ~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~--------~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~ 449 (606)
++...+++.+...+.. +.++.|.|+-.++ +..+++.|+.. ++.+..+||.|+..++++++.+|++
T Consensus 457 ~~~~~v~e~i~~ei~~-----GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~ 531 (677)
T COG1200 457 ERRPEVYERIREEIAK-----GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE 531 (677)
T ss_pred ccHHHHHHHHHHHHHc-----CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc
Confidence 6667778888777764 7779999987654 45666667643 5678899999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEecCC-CCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhc
Q 007365 450 GKTPILVATDVAARGLDIPHVAHVVNFDLP-NDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESN 524 (606)
Q Consensus 450 g~~~iLVaT~v~~~GlDip~v~~VI~~d~p-~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~ 524 (606)
|+++|||||.|.+.|||+|+.++.|+++.- .-.++..|-.||+||......|++++.+...+..+.=.++|.+..
T Consensus 532 ~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~ 607 (677)
T COG1200 532 GEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETT 607 (677)
T ss_pred CCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcC
Confidence 999999999999999999999998887764 378899999999999999999999999877666666556666543
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=5.7e-31 Score=285.64 Aligned_cols=342 Identities=20% Similarity=0.271 Sum_probs=242.9
Q ss_pred hCCCCCCCHHHHhHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007365 159 RCKYVKPTPVQRHAIPISVA-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~-~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
-++|..++.+|.+++|.+.+ +.++|||||||||||..|++.||..+.+.... ........++|+|+|+++||..+.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~---~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ---GDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc---cccccCCceEEEEechHHHHHHHH
Confidence 34677899999999998765 58999999999999999999999888752211 112234567999999999999999
Q ss_pred HHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcc---ccccceeEEEEecccccccCCCHHH
Q 007365 238 DEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR---VSLQMIRYLALDEADRMLDMGFEPQ 314 (606)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~---~~l~~~~~lVlDEah~~~~~gf~~~ 314 (606)
+.+.+-...++++|..++|.....+.. -..|+|||+||+++.-.-++.. ..++.|.+||+||+|.+-+ ...+.
T Consensus 182 ~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpv 257 (1230)
T KOG0952|consen 182 DKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPV 257 (1230)
T ss_pred HHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccch
Confidence 988877777899999999988654432 2348999999999753322211 1357789999999996554 46788
Q ss_pred HHHHHHhcCC---CCCCCceEEEEeccChHHHHHHHHHhhc-C-cEEEEeccccCccCceeEEEEEeccc---hhhhH--
Q 007365 315 IRKIVQQMDM---PPPGVRQTMLFSATFPKEIQKLASDFLA-N-YVFLAVGRVGSSTDLIVQRVEYVHES---DKRSH-- 384 (606)
Q Consensus 315 i~~i~~~l~~---~~~~~~q~ll~SAT~~~~i~~l~~~~l~-~-~~~~~~~~~~~~~~~i~~~~~~~~~~---~k~~~-- 384 (606)
++.|+..... ......+++++|||+|+-. .++ .||. + +.-+.........-.+.+.++-.... .+...
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN~e-DvA-~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATLPNYE-DVA-RFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccCCCHH-HHH-HHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHH
Confidence 8888776531 1234568999999999853 344 4443 3 33332222233333445555544433 11111
Q ss_pred --HHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-----------------------CCCcEEeeCccCHHH
Q 007365 385 --LMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-----------------------GFPATTIHGDRTQQE 439 (606)
Q Consensus 385 --l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-----------------------~~~~~~lhg~~~~~~ 439 (606)
..+.+.+.+. .+.+++|||.++......++.|.+. .......|++|.-.+
T Consensus 336 ~~~~~kv~e~~~-----~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~D 410 (1230)
T KOG0952|consen 336 EVCYDKVVEFLQ-----EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSD 410 (1230)
T ss_pred HHHHHHHHHHHH-----cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhh
Confidence 2222223332 2677999999999888888887432 123445789999999
Q ss_pred HHHHHHhccCCCCcEEEEccccccCCCCCCccEEE----EecCCC------CHhHHHHHhhccccC--CCcceEEEEecc
Q 007365 440 RELALRSFKSGKTPILVATDVAARGLDIPHVAHVV----NFDLPN------DIDDYVHRIGRTGRA--GKSGLATAFFNE 507 (606)
Q Consensus 440 R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI----~~d~p~------s~~~y~QRiGR~gR~--g~~G~~~~~~~~ 507 (606)
|..+.+.|+.|.++||+||..++.|+++|+-.++| .||... .+-+-+|..|||||. ...|.++++.+.
T Consensus 411 R~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~ 490 (1230)
T KOG0952|consen 411 RQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTR 490 (1230)
T ss_pred HHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecc
Confidence 99999999999999999999999999999865555 355543 577889999999995 446888887776
Q ss_pred CChhhHH
Q 007365 508 NNLSLAR 514 (606)
Q Consensus 508 ~~~~~~~ 514 (606)
+....+.
T Consensus 491 dkl~~Y~ 497 (1230)
T KOG0952|consen 491 DKLDHYE 497 (1230)
T ss_pred cHHHHHH
Confidence 5444433
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.98 E-value=8.2e-31 Score=255.80 Aligned_cols=345 Identities=17% Similarity=0.289 Sum_probs=257.2
Q ss_pred cccCCCCHHHHHHHHh-CCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcE
Q 007365 144 FAEIDLGEELNLNIRR-CKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL 222 (606)
Q Consensus 144 f~~~~l~~~l~~~l~~-~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~ 222 (606)
-++++.+.+..+.|+. +...+++|.|..+|++.+.+.++++..|||-||+++|.+|+|.. ..+
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a----------------dg~ 136 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA----------------DGF 136 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc----------------CCc
Confidence 3567778777777753 46678999999999999999999999999999999999998732 235
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hh---cCCcEEEecHHHHHH---HHHh--cccc
Q 007365 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LE---RGVDILVATPGRLVD---LLER--ARVS 291 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~---~~~~Ilv~Tp~~L~~---~l~~--~~~~ 291 (606)
+||+||...|.+...-.++.+ ++....+....+..+..+. +. ....+|+.||+.+.. ++.+ ..+.
T Consensus 137 alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~ 212 (695)
T KOG0353|consen 137 ALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALE 212 (695)
T ss_pred eEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhh
Confidence 999999999998887778776 6666655555544332221 11 236799999998843 2221 2234
Q ss_pred ccceeEEEEecccccccCC--CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCce
Q 007365 292 LQMIRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLI 369 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~g--f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i 369 (606)
...+.+|.+||+|+...|| |++++..+--.-+. -+...+|+++||....+...+++.|.-...++. +.....+++
T Consensus 213 ~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq--f~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl 289 (695)
T KOG0353|consen 213 AGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ--FKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNL 289 (695)
T ss_pred cceeEEEeecceeehhhhCcccCcchHHHHHHHHh--CCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCc
Confidence 5678999999999999887 77777654222111 234568999999988887777776643222221 112222233
Q ss_pred eEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccC
Q 007365 370 VQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS 449 (606)
Q Consensus 370 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~ 449 (606)
. |.+.......+...+-+...+... ...+..||||-+.+.|+.++..|+..|+.+..+|..|.+.++.-+-+.|-.
T Consensus 290 ~--yev~qkp~n~dd~~edi~k~i~~~--f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a 365 (695)
T KOG0353|consen 290 K--YEVRQKPGNEDDCIEDIAKLIKGD--FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA 365 (695)
T ss_pred e--eEeeeCCCChHHHHHHHHHHhccc--cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc
Confidence 2 333333333333333333333221 235668999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHH------------------------------------------
Q 007365 450 GKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH------------------------------------------ 487 (606)
Q Consensus 450 g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~Q------------------------------------------ 487 (606)
|+++|+|||-.+..|||-|+|++|||..+|.++++|.|
T Consensus 366 ~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfse 445 (695)
T KOG0353|consen 366 GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSE 445 (695)
T ss_pred cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecc
Confidence 99999999999999999999999999999999999999
Q ss_pred -HhhccccCCCcceEEEEeccCChhhHHH
Q 007365 488 -RIGRTGRAGKSGLATAFFNENNLSLARP 515 (606)
Q Consensus 488 -RiGR~gR~g~~G~~~~~~~~~~~~~~~~ 515 (606)
-.||+||.+.+..|+++|.-.|.-....
T Consensus 446 kesgragrd~~~a~cilyy~~~difk~ss 474 (695)
T KOG0353|consen 446 KESGRAGRDDMKADCILYYGFADIFKISS 474 (695)
T ss_pred hhccccccCCCcccEEEEechHHHHhHHH
Confidence 6799999999999999997665543333
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.98 E-value=6.9e-30 Score=287.97 Aligned_cols=313 Identities=18% Similarity=0.211 Sum_probs=204.5
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
...|+|+|+.+........-+|+.||||+|||.+++.++. .++.... ...++|..||+++++|++++++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~~~----------~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQGL----------ADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHhCC----------CCeEEEECcHHHHHHHHHHHHH
Confidence 3479999998865544456789999999999999877655 3333211 1249999999999999999998
Q ss_pred Hhhhc--CCcEEEEEECCCChHHHHH--------------------H----Hhc---CCcEEEecHHHHHHHHHhcc-cc
Q 007365 242 KFSYQ--TGVKVVVAYGGAPINQQLR--------------------E----LER---GVDILVATPGRLVDLLERAR-VS 291 (606)
Q Consensus 242 ~~~~~--~~~~~~~~~gg~~~~~~~~--------------------~----l~~---~~~Ilv~Tp~~L~~~l~~~~-~~ 291 (606)
++... ....+.+++|......... . ..+ -.+|+|+|..+++..+...+ ..
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~ 432 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRF 432 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHH
Confidence 75432 1345666676543211110 0 111 16899999999875443321 12
Q ss_pred ccc----eeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcC---------cEEEE
Q 007365 292 LQM----IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLAN---------YVFLA 358 (606)
Q Consensus 292 l~~----~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~---------~~~~~ 358 (606)
+.. -++|||||+|-+ +..+...+..+++.+. .....+|+||||+|......+...+.. |..++
T Consensus 433 lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~---~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt 508 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA---QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLIT 508 (878)
T ss_pred HHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH---hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccc
Confidence 222 248999999975 4334455666666553 223469999999998775433322111 10010
Q ss_pred ecc------c--cCccC--ceeEEEEE--e--ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC
Q 007365 359 VGR------V--GSSTD--LIVQRVEY--V--HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN 424 (606)
Q Consensus 359 ~~~------~--~~~~~--~i~~~~~~--~--~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~ 424 (606)
... . ..... .....+.. . ........+++.+.+... +..++||||||++.|+.+++.|+..
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-----~g~~vLVf~NTV~~Aq~ly~~L~~~ 583 (878)
T PRK09694 509 WRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN-----AGAQVCLICNLVDDAQKLYQRLKEL 583 (878)
T ss_pred ccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHHHHhh
Confidence 000 0 00000 00111111 1 111112334444443332 2678999999999999999999876
Q ss_pred C---CCcEEeeCccCHHHH----HHHHHhc-cCCC---CcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccc
Q 007365 425 G---FPATTIHGDRTQQER----ELALRSF-KSGK---TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 493 (606)
Q Consensus 425 ~---~~~~~lhg~~~~~~R----~~~l~~F-~~g~---~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~g 493 (606)
. ..+..+|+.+++.+| +++++.| ++++ ..|||||+++++|||| ++++||....| ++.++||+||++
T Consensus 584 ~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~ 660 (878)
T PRK09694 584 NNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLH 660 (878)
T ss_pred CCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccC
Confidence 4 678999999999999 4678888 6666 3699999999999999 68999998888 789999999999
Q ss_pred cCCC
Q 007365 494 RAGK 497 (606)
Q Consensus 494 R~g~ 497 (606)
|.+.
T Consensus 661 R~~~ 664 (878)
T PRK09694 661 RHHR 664 (878)
T ss_pred CCCC
Confidence 9875
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=7.2e-31 Score=280.72 Aligned_cols=303 Identities=22% Similarity=0.287 Sum_probs=202.6
Q ss_pred CCCCHHHHhHHHHHhc----CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVA----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~----~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
.+|++||++|+..+.. .+..++++|||+|||++++..+. .+. ..+||||||++|+.||++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~---------------~~~Lvlv~~~~L~~Qw~~ 98 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELK---------------RSTLVLVPTKELLDQWAE 98 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hhc---------------CCEEEEECcHHHHHHHHH
Confidence 4699999999999988 89999999999999997665543 221 129999999999999998
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHH
Q 007365 239 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKI 318 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i 318 (606)
.+.++.... ..+.. +++.... +.. ..|.|+|.+.+........+....+.+||+||||++....+ +.+
T Consensus 99 ~~~~~~~~~-~~~g~-~~~~~~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~ 166 (442)
T COG1061 99 ALKKFLLLN-DEIGI-YGGGEKE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRI 166 (442)
T ss_pred HHHHhcCCc-cccce-ecCceec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHH
Confidence 777764322 12222 3333211 111 36999999999875322223344799999999999877543 344
Q ss_pred HHhcCCCCCCCceEEEEeccChHHHHHHHHHh--hcCcEEEEeccccCccCceeEEE----EEe--cc---------chh
Q 007365 319 VQQMDMPPPGVRQTMLFSATFPKEIQKLASDF--LANYVFLAVGRVGSSTDLIVQRV----EYV--HE---------SDK 381 (606)
Q Consensus 319 ~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~--l~~~~~~~~~~~~~~~~~i~~~~----~~~--~~---------~~k 381 (606)
.+.+.. ...+++||||++.........+ +..++.+.+.......+.....+ ..+ .. ..+
T Consensus 167 ~~~~~~----~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~ 242 (442)
T COG1061 167 LELLSA----AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESAR 242 (442)
T ss_pred HHhhhc----ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhh
Confidence 444421 1118999999764321111111 11122332221111111100000 000 00 000
Q ss_pred hh-----------------------HHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHH
Q 007365 382 RS-----------------------HLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQ 438 (606)
Q Consensus 382 ~~-----------------------~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 438 (606)
.. .....+....... . +..++||||.++.+++.++..|...++ +..+.++.++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~ 319 (442)
T COG1061 243 FRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKH-A-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKE 319 (442)
T ss_pred hhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHh-c-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHH
Confidence 00 0001111111110 1 367899999999999999999988888 88999999999
Q ss_pred HHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhcccc-CCCcce
Q 007365 439 ERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR-AGKSGL 500 (606)
Q Consensus 439 ~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR-~g~~G~ 500 (606)
+|+.+++.|+.|.+++||++.|+.+|+|+|+++++|......|...|+||+||..| ...++.
T Consensus 320 eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 320 EREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999 333443
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=6.3e-30 Score=247.08 Aligned_cols=202 Identities=54% Similarity=0.822 Sum_probs=183.0
Q ss_pred cccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEE
Q 007365 144 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLA 223 (606)
Q Consensus 144 f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~ 223 (606)
|.++.+++.+.+.+...++..|+++|+++++.+++++++++++|||+|||++|++|++..+..... ..++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--------~~~~~v 72 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--------KDGPQA 72 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--------cCCceE
Confidence 678899999999999999999999999999999999999999999999999999999998876521 234679
Q ss_pred EEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecc
Q 007365 224 LILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA 303 (606)
Q Consensus 224 Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 303 (606)
||++||++|+.|+.+.++.+....++++..++++.........+..+++|+|+||++|.+++.+....+.++++||+||+
T Consensus 73 iii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 73 LILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 99999999999999999999877789999999999887777777778999999999999999888888899999999999
Q ss_pred cccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEE
Q 007365 304 DRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFL 357 (606)
Q Consensus 304 h~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~ 357 (606)
|.+.+.+|...+..++..+ +..+|++++|||+++.+..++..++.+++++
T Consensus 153 h~~~~~~~~~~~~~~~~~l----~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 153 DRMLDMGFEDQIREILKLL----PKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHhhccChHHHHHHHHHhC----CcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999998999999999888 4588999999999999999999999988765
No 87
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.1e-29 Score=278.20 Aligned_cols=324 Identities=17% Similarity=0.212 Sum_probs=229.7
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|--.--++ ++.-|+.++||+|||++|++|++..++... .++||+||++||.|.++++..+
T Consensus 82 ~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~G~-------------~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 82 RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAISGR-------------GVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhcCC-------------CEEEEcCCHHHHHHHHHHHHHH
Confidence 4555665444334 455689999999999999999997776432 2999999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhc-cccc-----cceeEEEEecccccc-cCC-----
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA-RVSL-----QMIRYLALDEADRML-DMG----- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~-~~~l-----~~~~~lVlDEah~~~-~~g----- 310 (606)
...+++++.+++++.+...+...+ .++|+|+||++| +++|... .+++ ..+.++||||||.|+ |..
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLI 224 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLI 224 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCcee
Confidence 999999999999998766654433 589999999999 9998776 3344 589999999999876 221
Q ss_pred ----------CHHHHHHHHHhcCCC----------CCCCceEEEEeccChHHHHH-------------------------
Q 007365 311 ----------FEPQIRKIVQQMDMP----------PPGVRQTMLFSATFPKEIQK------------------------- 345 (606)
Q Consensus 311 ----------f~~~i~~i~~~l~~~----------~~~~~q~ll~SAT~~~~i~~------------------------- 345 (606)
....+..++..+... -....+.+.|+-.=-..++.
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~ 304 (896)
T PRK13104 225 ISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHH 304 (896)
T ss_pred eeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHH
Confidence 222333444444221 00112233333320011111
Q ss_pred ----HHHHh-hc---CcEEE-----Eecccc-Ccc---------------------------------------------
Q 007365 346 ----LASDF-LA---NYVFL-----AVGRVG-SST--------------------------------------------- 366 (606)
Q Consensus 346 ----l~~~~-l~---~~~~~-----~~~~~~-~~~--------------------------------------------- 366 (606)
+...+ +. +|++. .++... ...
T Consensus 305 i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsG 384 (896)
T PRK13104 305 VNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSG 384 (896)
T ss_pred HHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhcc
Confidence 00011 11 12111 010000 000
Q ss_pred ---------------------------Cc---eeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHH
Q 007365 367 ---------------------------DL---IVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADA 416 (606)
Q Consensus 367 ---------------------------~~---i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~ 416 (606)
+. -.....+.....|...+.+.+.+... ...++||||+|++.++.
T Consensus 385 MTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~-----~g~PVLVgt~Sie~sE~ 459 (896)
T PRK13104 385 MTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV-----RKQPVLVGTVSIEASEF 459 (896)
T ss_pred CCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEeCcHHHHHH
Confidence 00 00112333445677777777665543 48899999999999999
Q ss_pred HHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCc--------------------------
Q 007365 417 LEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV-------------------------- 470 (606)
Q Consensus 417 l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v-------------------------- 470 (606)
|+++|...++++..||+.+.+.+++.+.+.|+.|. |+|||++|+||+||.=-
T Consensus 460 ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~ 537 (896)
T PRK13104 460 LSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEW 537 (896)
T ss_pred HHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999994 99999999999999621
Q ss_pred ------------cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChh
Q 007365 471 ------------AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 471 ------------~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~ 511 (606)
=|||--..+.|..--.|-.||+||.|.+|.+..|++-+|.-
T Consensus 538 ~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 538 QKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred hhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 17888889999999999999999999999999999977653
No 88
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-28 Score=271.92 Aligned_cols=149 Identities=15% Similarity=0.227 Sum_probs=130.1
Q ss_pred ccCCCCHHHHHHHH-----hCCCCCC---CHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCC
Q 007365 145 AEIDLGEELNLNIR-----RCKYVKP---TPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA 216 (606)
Q Consensus 145 ~~~~l~~~l~~~l~-----~~~~~~p---~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~ 216 (606)
+.+.+..++...+. .++|..| +|+|.++|+.++.++++|++|+||+|||++|++|++..++...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------- 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------- 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC--------
Confidence 45677888777776 5788888 9999999999999999999999999999999999998876431
Q ss_pred cccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhcccccc--
Q 007365 217 RTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERARVSLQ-- 293 (606)
Q Consensus 217 ~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~~~~l~-- 293 (606)
.++||+||++||.|+++++..+....++++.+++||.+...+...+ .|+|+|+||++| +++|+...+.++
T Consensus 137 -----~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~ 209 (970)
T PRK12899 137 -----PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKE 209 (970)
T ss_pred -----CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHH
Confidence 1899999999999999999999988999999999999988877555 599999999999 999988766555
Q ss_pred -----ceeEEEEeccccccc
Q 007365 294 -----MIRYLALDEADRMLD 308 (606)
Q Consensus 294 -----~~~~lVlDEah~~~~ 308 (606)
.+.++||||||.|+-
T Consensus 210 ~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 210 EQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HhhcccccEEEEechhhhhh
Confidence 458999999999873
No 89
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2e-28 Score=270.48 Aligned_cols=321 Identities=19% Similarity=0.216 Sum_probs=239.6
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|--..-++++| -|+.++||+|||+++.+|++...+... .+-|++||.+||.|.++++..+
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~-------------~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGK-------------GVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCC-------------CEEEEecCHHHHHHHHHHHHHH
Confidence 5778887766566555 599999999999999999974444322 2779999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhccc------cccceeEEEEecccccc-cCC-----
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERARV------SLQMIRYLALDEADRML-DMG----- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~~~------~l~~~~~lVlDEah~~~-~~g----- 310 (606)
...+++++.+++++.+..++...+ .++|+|+|+++| +++|..... .+..+.++||||||.|+ |..
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLi 223 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLI 223 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCcee
Confidence 999999999999998876655544 489999999999 888876542 36788999999999876 210
Q ss_pred ----------CHHHHHHHHHhcCCC-------------------------------------------------------
Q 007365 311 ----------FEPQIRKIVQQMDMP------------------------------------------------------- 325 (606)
Q Consensus 311 ----------f~~~i~~i~~~l~~~------------------------------------------------------- 325 (606)
....+..++..+...
T Consensus 224 iSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~ 303 (830)
T PRK12904 224 ISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKR 303 (830)
T ss_pred eECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 112222333322100
Q ss_pred ------------------------------------------CCCC----------------ceEEEEeccChHHHHHHH
Q 007365 326 ------------------------------------------PPGV----------------RQTMLFSATFPKEIQKLA 347 (606)
Q Consensus 326 ------------------------------------------~~~~----------------~q~ll~SAT~~~~i~~l~ 347 (606)
..+. ..+.+||.|...+..++.
T Consensus 304 d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 383 (830)
T PRK12904 304 DVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFR 383 (830)
T ss_pred CCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHH
Confidence 0000 123446666655444444
Q ss_pred HHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCC
Q 007365 348 SDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFP 427 (606)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~ 427 (606)
+.|--+.+. +....+....-.....+.....|...+.+.+.+... +..++||||+|++.++.|++.|...+++
T Consensus 384 ~iY~l~vv~--IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~-----~grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 384 EIYNLDVVV--IPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHK-----KGQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred HHhCCCEEE--cCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 433333222 211111111111224555677888888888876543 3778999999999999999999999999
Q ss_pred cEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCc-------------------------------------
Q 007365 428 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV------------------------------------- 470 (606)
Q Consensus 428 ~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v------------------------------------- 470 (606)
+..||+. +.+|+..+..|+.+...|+|||++|+||+||+--
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9999995 8899999999999999999999999999999753
Q ss_pred -cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007365 471 -AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 471 -~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
=|||--..+.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2799999999999999999999999999999999997765
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.9e-28 Score=263.76 Aligned_cols=289 Identities=21% Similarity=0.228 Sum_probs=196.9
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHH
Q 007365 183 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQ 262 (606)
Q Consensus 183 li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~ 262 (606)
|+.++||||||.+|+..+...+ .. +.++|||+|+++|+.|+++.+++.. +.++.+++++.+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~~------------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-AL------------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hc------------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHH
Confidence 4689999999999876654433 22 1249999999999999999998753 567888888876554
Q ss_pred H---HHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCC---CH---HHHHHHHHhcCCCCCCCceE
Q 007365 263 Q---LRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---FE---PQIRKIVQQMDMPPPGVRQT 332 (606)
Q Consensus 263 ~---~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g---f~---~~i~~i~~~l~~~~~~~~q~ 332 (606)
. +..+.. .++|||+|+..|. ..+.++++||+||+|...... .. .++..+.... ...++
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-----~~~~v 132 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-----FNCPV 132 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-----cCCCE
Confidence 3 333333 4799999998764 257889999999999866332 11 1222233322 45679
Q ss_pred EEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch----hhhHHHHHHHHHHhcccCCCCceEEEEE
Q 007365 333 MLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD----KRSHLMDLLHAQVANGVHGKQSLTLVFV 408 (606)
Q Consensus 333 ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~~~~~~~~LVF~ 408 (606)
|++|||+..+....+.. ..+..+...............+....... -...+++.+.+.+.. +.++|||+
T Consensus 133 il~SATPsles~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~-----g~qvLvfl 205 (505)
T TIGR00595 133 VLGSATPSLESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA-----GEQSILFL 205 (505)
T ss_pred EEEeCCCCHHHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc-----CCcEEEEE
Confidence 99999977655444421 22222222211111111111111111111 123466666666544 56799997
Q ss_pred cchhh------------------------------------------------------------HHHHHHHHHhC--CC
Q 007365 409 ETKKG------------------------------------------------------------ADALEHWLYMN--GF 426 (606)
Q Consensus 409 ~s~~~------------------------------------------------------------~~~l~~~L~~~--~~ 426 (606)
|++.. ++.+++.|... +.
T Consensus 206 nrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~ 285 (505)
T TIGR00595 206 NRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGA 285 (505)
T ss_pred eCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCC
Confidence 76543 47778888776 77
Q ss_pred CcEEeeCccCHHHH--HHHHHhccCCCCcEEEEccccccCCCCCCccEEE--EecCCC----------CHhHHHHHhhcc
Q 007365 427 PATTIHGDRTQQER--ELALRSFKSGKTPILVATDVAARGLDIPHVAHVV--NFDLPN----------DIDDYVHRIGRT 492 (606)
Q Consensus 427 ~~~~lhg~~~~~~R--~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI--~~d~p~----------s~~~y~QRiGR~ 492 (606)
++..+|+++++.++ +.+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|... ....|+|++||+
T Consensus 286 ~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRa 365 (505)
T TIGR00595 286 RIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRA 365 (505)
T ss_pred cEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhcc
Confidence 89999999987766 8999999999999999999999999999999986 555422 245689999999
Q ss_pred ccCCCcceEEEEec
Q 007365 493 GRAGKSGLATAFFN 506 (606)
Q Consensus 493 gR~g~~G~~~~~~~ 506 (606)
||.++.|.+++...
T Consensus 366 gR~~~~g~viiqt~ 379 (505)
T TIGR00595 366 GRAEDPGQVIIQTY 379 (505)
T ss_pred CCCCCCCEEEEEeC
Confidence 99999999886543
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.4e-28 Score=268.84 Aligned_cols=322 Identities=19% Similarity=0.230 Sum_probs=232.2
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
..|+++|--+.-+++.|+ |+.+.||+|||+++.+|++...+... .|-|++||-.||.|-++++..
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~-------------~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK-------------GVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC-------------CeEEEeccHHHHHhhHHHHHH
Confidence 368888887766666655 99999999999999999987776653 389999999999999999999
Q ss_pred hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHH-HHHHhc------cccccceeEEEEecccccc-cCC----
Q 007365 243 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLV-DLLERA------RVSLQMIRYLALDEADRML-DMG---- 310 (606)
Q Consensus 243 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~-~~l~~~------~~~l~~~~~lVlDEah~~~-~~g---- 310 (606)
+....++++.++.+..+..+. .-...|||+++|...|- +.|... ......+.+.|+||+|.++ |..
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r--~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPL 221 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEK--RAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHH--HHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCce
Confidence 999999999998877654433 33346899999998773 334322 1123567899999999765 210
Q ss_pred -----------CHHHHHHHHHhcCCC------------------------------------------------------
Q 007365 311 -----------FEPQIRKIVQQMDMP------------------------------------------------------ 325 (606)
Q Consensus 311 -----------f~~~i~~i~~~l~~~------------------------------------------------------ 325 (606)
+...+..++..+...
T Consensus 222 iisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i 301 (796)
T PRK12906 222 IISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHI 301 (796)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHH
Confidence 111112222211100
Q ss_pred ------------------------------------------------------CCCC----------------ceEEEE
Q 007365 326 ------------------------------------------------------PPGV----------------RQTMLF 335 (606)
Q Consensus 326 ------------------------------------------------------~~~~----------------~q~ll~ 335 (606)
..+. .++.+|
T Consensus 302 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~Gm 381 (796)
T PRK12906 302 DQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGM 381 (796)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhcc
Confidence 0000 022334
Q ss_pred eccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHH
Q 007365 336 SATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGAD 415 (606)
Q Consensus 336 SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~ 415 (606)
|.|...+-..+.+.|--+. +.+....+....-.....+.....|...+.+.+..... +..++||||+|+..++
T Consensus 382 TGTa~~e~~Ef~~iY~l~v--v~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~-----~g~pvLI~t~si~~se 454 (796)
T PRK12906 382 TGTAKTEEEEFREIYNMEV--ITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHA-----KGQPVLVGTVAIESSE 454 (796)
T ss_pred CCCCHHHHHHHHHHhCCCE--EEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEeCcHHHHH
Confidence 5554443333333222222 22211111111111223455667788888888866543 3788999999999999
Q ss_pred HHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCC---Ccc-----EEEEecCCCCHhHHHH
Q 007365 416 ALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP---HVA-----HVVNFDLPNDIDDYVH 487 (606)
Q Consensus 416 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip---~v~-----~VI~~d~p~s~~~y~Q 487 (606)
.|++.|...++++..+|+++.+.+++.+.+.+++|. |+|||++|+||+||+ +|. |||++++|.|.+.|.|
T Consensus 455 ~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Q 532 (796)
T PRK12906 455 RLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQ 532 (796)
T ss_pred HHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHH
Confidence 999999999999999999999888888888888887 999999999999994 899 9999999999999999
Q ss_pred HhhccccCCCcceEEEEeccCCh
Q 007365 488 RIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 488 RiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
++|||||.|.+|.+..|++.+|.
T Consensus 533 l~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 533 LRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HhhhhccCCCCcceEEEEeccch
Confidence 99999999999999999998765
No 92
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.96 E-value=4.8e-28 Score=267.64 Aligned_cols=336 Identities=18% Similarity=0.230 Sum_probs=235.7
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.-+.++++.+.++.+++.++|+++||||||+..-..|++.....+ ..+.++|..|+|.-|..+++++..-
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----------~~~~IicTQPRRIsAIsvAeRVa~E 242 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----------AACNIICTQPRRISAISVAERVAKE 242 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----------CCCeEEecCCchHHHHHHHHHHHHH
Confidence 457788889999999999999999999999987777887776654 2356999999999999999988764
Q ss_pred h-hcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccc-cccCCCHHHHHHHHHh
Q 007365 244 S-YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 244 ~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~-~~~~gf~~~i~~i~~~ 321 (606)
. ...+-.|..-....+ .......+++||.|.|+..|.... .+..+.+||+||+|. -.+.+|...+.+.+..
T Consensus 243 R~~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~ 315 (924)
T KOG0920|consen 243 RGESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLP 315 (924)
T ss_pred hccccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhh
Confidence 3 222322222222111 112236899999999999998855 589999999999995 3445555544444443
Q ss_pred cCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEec-cccCccC---------------ceeEE------------E
Q 007365 322 MDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVG-RVGSSTD---------------LIVQR------------V 373 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~-~~~~~~~---------------~i~~~------------~ 373 (606)
. .++.++|+||||+.. ++..+|+.....+.+. +...... ...+. +
T Consensus 316 ~----~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (924)
T KOG0920|consen 316 R----NPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARL 388 (924)
T ss_pred h----CCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccc
Confidence 3 478899999999874 3334444333322221 1110000 00000 1
Q ss_pred EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-------CCCcEEeeCccCHHHHHHHHHh
Q 007365 374 EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-------GFPATTIHGDRTQQERELALRS 446 (606)
Q Consensus 374 ~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~l~~ 446 (606)
.....+.....+.+++...... ...+.+|||.+.+.++..+.+.|... .+-+.++|+.|+..++..++..
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~---~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~ 465 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDER---EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKR 465 (924)
T ss_pred hhccccccHHHHHHHHHhcccC---CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCC
Confidence 1111223344444555444433 34788999999999999999999642 3667789999999999999999
Q ss_pred ccCCCCcEEEEccccccCCCCCCccEEEE--------ecCCC----------CHhHHHHHhhccccCCCcceEEEEeccC
Q 007365 447 FKSGKTPILVATDVAARGLDIPHVAHVVN--------FDLPN----------DIDDYVHRIGRTGRAGKSGLATAFFNEN 508 (606)
Q Consensus 447 F~~g~~~iLVaT~v~~~GlDip~v~~VI~--------~d~p~----------s~~~y~QRiGR~gR~g~~G~~~~~~~~~ 508 (606)
...|..+||+||++|+.+|.|++|.+||+ ||+-. +.++-.||.|||||. ++|.||.+|+..
T Consensus 466 pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 466 PPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred CCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 99999999999999999999999999995 55433 556677999999999 899999999975
Q ss_pred ChhhH---HHHHHHHHHhcCcc
Q 007365 509 NLSLA---RPLAELMQESNQEV 527 (606)
Q Consensus 509 ~~~~~---~~l~~~l~~~~q~v 527 (606)
..+.+ ..+.++++...+++
T Consensus 545 ~~~~~~~~~q~PEilR~pL~~l 566 (924)
T KOG0920|consen 545 RYEKLMLAYQLPEILRTPLEEL 566 (924)
T ss_pred hhhhcccccCChHHHhChHHHh
Confidence 44322 33566666554443
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=1.5e-27 Score=276.43 Aligned_cols=310 Identities=18% Similarity=0.260 Sum_probs=196.8
Q ss_pred CCCCHHHHhHHHHHhc-----CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVA-----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~-----~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
..+++||.+||..+.+ .+.+|++++||||||.+++ .++..+++... ..++|||+|+++|+.|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~~----------~~rVLfLvDR~~L~~Qa~ 480 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAKR----------FRRILFLVDRSALGEQAE 480 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcCc----------cCeEEEEecHHHHHHHHH
Confidence 4589999999987653 3789999999999998744 44455554321 135999999999999999
Q ss_pred HHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc-----cccccceeEEEEeccccccc----
Q 007365 238 DEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----RVSLQMIRYLALDEADRMLD---- 308 (606)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~-----~~~l~~~~~lVlDEah~~~~---- 308 (606)
+.++.+..........+++....... .......|+|+|+++|...+... ...+..+++||+||||+...
T Consensus 481 ~~F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 481 DAFKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 99998742222111111211111111 11234789999999998765432 13567889999999999531
Q ss_pred -----CC------CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHH--------------HhhcC---cEEEEe-
Q 007365 309 -----MG------FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS--------------DFLAN---YVFLAV- 359 (606)
Q Consensus 309 -----~g------f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~--------------~~l~~---~~~~~~- 359 (606)
.. +...++.++.+++ ...|+||||+......+.. .+|.+ ++.+..
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFd------A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~ 632 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFD------AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETR 632 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcC------ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEE
Confidence 01 1356677777652 3479999998543322211 12211 111110
Q ss_pred -ccccCc---c---Ccee---EEE--EEeccc---------------hhhhHHHHHHHHHHhcccCCCCceEEEEEcchh
Q 007365 360 -GRVGSS---T---DLIV---QRV--EYVHES---------------DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKK 412 (606)
Q Consensus 360 -~~~~~~---~---~~i~---~~~--~~~~~~---------------~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~ 412 (606)
...+.. . ..+. ..+ ...++. .....+++.+..... .....++||||.+++
T Consensus 633 ~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~---~~~~~KtiIF~~s~~ 709 (1123)
T PRK11448 633 LSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLD---PTGEGKTLIFAATDA 709 (1123)
T ss_pred eccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHh---ccCCCcEEEEEcCHH
Confidence 000000 0 0000 000 000000 000111111212221 122478999999999
Q ss_pred hHHHHHHHHHhC------CC---CcEEeeCccCHHHHHHHHHhccCCCC-cEEEEccccccCCCCCCccEEEEecCCCCH
Q 007365 413 GADALEHWLYMN------GF---PATTIHGDRTQQERELALRSFKSGKT-PILVATDVAARGLDIPHVAHVVNFDLPNDI 482 (606)
Q Consensus 413 ~~~~l~~~L~~~------~~---~~~~lhg~~~~~~R~~~l~~F~~g~~-~iLVaT~v~~~GlDip~v~~VI~~d~p~s~ 482 (606)
+|+.+.+.|... ++ .+..+|++++ ++..++++|+++.. +|||+++++.+|+|+|.|.+||+++++.|.
T Consensus 710 HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~ 787 (1123)
T PRK11448 710 HADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSR 787 (1123)
T ss_pred HHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCH
Confidence 999999988653 22 4557899875 56789999999887 589999999999999999999999999999
Q ss_pred hHHHHHhhccccCC
Q 007365 483 DDYVHRIGRTGRAG 496 (606)
Q Consensus 483 ~~y~QRiGR~gR~g 496 (606)
..|+||+||+.|.-
T Consensus 788 ~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 788 ILYEQMLGRATRLC 801 (1123)
T ss_pred HHHHHHHhhhccCC
Confidence 99999999999963
No 94
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=6.5e-27 Score=261.33 Aligned_cols=308 Identities=19% Similarity=0.222 Sum_probs=235.7
Q ss_pred CCCHHHHhHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007365 164 KPTPVQRHAIPISVAG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~------~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
.-|+-|..||..+.+. .|-|+|+..|-|||-+++=+++..++.. .+|.||+||.-||+|.+
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-------------KQVAvLVPTTlLA~QHy 660 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-------------KQVAVLVPTTLLAQQHY 660 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-------------CeEEEEcccHHhHHHHH
Confidence 4689999999988663 6889999999999999998888777654 35999999999999999
Q ss_pred HHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHH
Q 007365 238 DEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP 313 (606)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~ 313 (606)
+.++.-...+.+++..+.-=.+.+++...+ .. .+||||+| .-|-+..+.++++.+||+||-||.. -
T Consensus 661 ~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqRFG-----V 730 (1139)
T COG1197 661 ETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQRFG-----V 730 (1139)
T ss_pred HHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhhcC-----c
Confidence 999988888899999887766666655444 33 48999999 3444556789999999999999944 3
Q ss_pred HHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHH
Q 007365 314 QIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQV 393 (606)
Q Consensus 314 ~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~ 393 (606)
.-++-++.+ ..+.-++-||||+=+..-.+.-.-+.+...+.. .+....-.+.+.. +.+. ..+-+.+...+
T Consensus 731 k~KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T---PP~~R~pV~T~V~--~~d~-~~ireAI~REl 800 (1139)
T COG1197 731 KHKEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT---PPEDRLPVKTFVS--EYDD-LLIREAILREL 800 (1139)
T ss_pred cHHHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccC---CCCCCcceEEEEe--cCCh-HHHHHHHHHHH
Confidence 444455555 455679999999744444454444555444432 2222222333322 2221 22333333333
Q ss_pred hcccCCCCceEEEEEcchhhHHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCcc
Q 007365 394 ANGVHGKQSLTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVA 471 (606)
Q Consensus 394 ~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~ 471 (606)
. .++++...+|.++.++.+++.|++. ...+...||.|+..+-++++.+|.+|+.+|||||.+.+.|||||+++
T Consensus 801 ~-----RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnAN 875 (1139)
T COG1197 801 L-----RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNAN 875 (1139)
T ss_pred h-----cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCc
Confidence 2 2788899999999999999999886 45678899999999999999999999999999999999999999999
Q ss_pred EEEEecCC-CCHhHHHHHhhccccCCCcceEEEEeccCC
Q 007365 472 HVVNFDLP-NDIDDYVHRIGRTGRAGKSGLATAFFNENN 509 (606)
Q Consensus 472 ~VI~~d~p-~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~ 509 (606)
++|.-+.- .-.++..|..||+||..+.+.||.++.+..
T Consensus 876 TiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 876 TIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred eEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 98866554 367999999999999999999999998654
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.7e-27 Score=253.32 Aligned_cols=311 Identities=21% Similarity=0.268 Sum_probs=226.5
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|-++|++||-++..+..+++.|+|.+|||+++-.+|...... ..++++.+|-++|.+|.++.++.-
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h-------------~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH-------------MTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh-------------ccceEecchhhhhccchHHHHHHh
Confidence 6899999999999999999999999999999887776432211 234999999999999999888864
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcC
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 323 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~ 323 (606)
....+ +++|... +...+.+||+|.+.|..+|-++.-.+.++.+|||||+|.+.|....-.+++++-.|
T Consensus 364 F~Dvg----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl- 431 (1248)
T KOG0947|consen 364 FGDVG----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML- 431 (1248)
T ss_pred ccccc----eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec-
Confidence 43322 6677664 33457899999999999999988788999999999999999988888888888888
Q ss_pred CCCCCCceEEEEeccChHHHHHHHHHhh---cCcEEEEec-cccC-----------ccCceeEEEEEec-----------
Q 007365 324 MPPPGVRQTMLFSATFPKEIQKLASDFL---ANYVFLAVG-RVGS-----------STDLIVQRVEYVH----------- 377 (606)
Q Consensus 324 ~~~~~~~q~ll~SAT~~~~i~~l~~~~l---~~~~~~~~~-~~~~-----------~~~~i~~~~~~~~----------- 377 (606)
|.+.++|++|||.|+..+ ++...- ...+++.-. +... ....+.|.-.++.
T Consensus 432 ---P~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 432 ---PRHVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ---cccceEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 899999999999988643 333221 111111110 0000 0000000000000
Q ss_pred --------------------------------------cchhh--hHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHH
Q 007365 378 --------------------------------------ESDKR--SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADAL 417 (606)
Q Consensus 378 --------------------------------------~~~k~--~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l 417 (606)
...+. ...++++...... ..-++||||-+++.|+..
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~----~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK----NLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc----ccCceEEEEEccccHHHH
Confidence 00011 1234444333322 255799999999999999
Q ss_pred HHHHHhC---------------------------------------CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc
Q 007365 418 EHWLYMN---------------------------------------GFPATTIHGDRTQQERELALRSFKSGKTPILVAT 458 (606)
Q Consensus 418 ~~~L~~~---------------------------------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 458 (606)
+++|... ...+.+.||++-+--++-+.-.|..|-++||+||
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 9999421 2345678999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEecC---------CCCHhHHHHHhhccccCCC--cceEEEEeccC
Q 007365 459 DVAARGLDIPHVAHVVNFDL---------PNDIDDYVHRIGRTGRAGK--SGLATAFFNEN 508 (606)
Q Consensus 459 ~v~~~GlDip~v~~VI~~d~---------p~s~~~y~QRiGR~gR~g~--~G~~~~~~~~~ 508 (606)
..++.|||.|.-.+|+. .+ --.+-+|.|+.|||||.|- +|+++++....
T Consensus 664 ETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 664 ETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 99999999998777663 22 1267899999999999876 68777776543
No 96
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=3.5e-27 Score=262.20 Aligned_cols=331 Identities=19% Similarity=0.248 Sum_probs=224.2
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
-+.+..+.+.++.+++.++|+++||||||+..-..+++... ...-.+.|+.|+|.-|..+++.+....
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~------------~~~g~I~~tQPRRlAArsvA~RvAeel 118 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL------------GIAGKIGCTQPRRLAARSVAERVAEEL 118 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc------------ccCCeEEecCchHHHHHHHHHHHHHHh
Confidence 34556677778889999999999999999954444433322 112249999999998888887776543
Q ss_pred -hcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccc-cccCCCHHHHH-HHHHh
Q 007365 245 -YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEPQIR-KIVQQ 321 (606)
Q Consensus 245 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~-~~~~gf~~~i~-~i~~~ 321 (606)
...+-.|...+-..+ .......|-|+|.|.|+..+.++.. |+.+++||+||+|+ .++.+|.--+. .++..
T Consensus 119 ~~~~G~~VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~ 191 (845)
T COG1643 119 GEKLGETVGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLAR 191 (845)
T ss_pred CCCcCceeeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhh
Confidence 222323322221111 1223468999999999999998875 99999999999995 44433332222 22333
Q ss_pred cCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCC
Q 007365 322 MDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQ 401 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~ 401 (606)
. +.+.++|+||||+..+ .+.+.|-.-+++..-++. -.+...|......+. .+.+-+...+........
T Consensus 192 r----r~DLKiIimSATld~~--rfs~~f~~apvi~i~GR~----fPVei~Y~~~~~~d~--~l~~ai~~~v~~~~~~~~ 259 (845)
T COG1643 192 R----RDDLKLIIMSATLDAE--RFSAYFGNAPVIEIEGRT----YPVEIRYLPEAEADY--ILLDAIVAAVDIHLREGS 259 (845)
T ss_pred c----CCCceEEEEecccCHH--HHHHHcCCCCEEEecCCc----cceEEEecCCCCcch--hHHHHHHHHHHHhccCCC
Confidence 3 5568899999998873 444443333443332221 112222211111111 133333322222223347
Q ss_pred ceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEec
Q 007365 402 SLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFD 477 (606)
Q Consensus 402 ~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d 477 (606)
+-+|||.+..++++.+++.|.. ..+.+.++|+.|+..++.++++--..++.+|++||+|++++|+||+|.+||.-.
T Consensus 260 GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG 339 (845)
T COG1643 260 GSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSG 339 (845)
T ss_pred CCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCC
Confidence 7799999999999999999987 347788999999999999999999999889999999999999999999999533
Q ss_pred C------------------CCCHhHHHHHhhccccCCCcceEEEEeccCChhhHH--HHHHHHHHhcCcc
Q 007365 478 L------------------PNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLAR--PLAELMQESNQEV 527 (606)
Q Consensus 478 ~------------------p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~--~l~~~l~~~~q~v 527 (606)
. |-|.++..||.|||||. .+|.||.+|++++...+. ...|+++...+.+
T Consensus 340 ~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~ 408 (845)
T COG1643 340 LAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFLAFPEFTLPEILRTDLSGL 408 (845)
T ss_pred cccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHHhcccCCChhhhhcchHHH
Confidence 3 44788999999999999 689999999985543221 2445555444433
No 97
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=1.5e-26 Score=263.26 Aligned_cols=317 Identities=19% Similarity=0.241 Sum_probs=212.8
Q ss_pred CCCHHHHhHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISV----AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~----~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
++++||.+++.++. .+.+.|++.++|.|||+..+. ++..+....... ..+|||||. .|..||.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~~~---------gp~LIVvP~-SlL~nW~~E 237 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRGIT---------GPHMVVAPK-STLGNWMNE 237 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcCCC---------CCEEEEeCh-HHHHHHHHH
Confidence 58999999998875 467899999999999997543 344443321111 128999996 567889999
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHH--H-hcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHH
Q 007365 240 AKKFSYQTGVKVVVAYGGAPINQQLRE--L-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 316 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~--l-~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~ 316 (606)
+.+|+. .++++.++|.......... + ....+|+|+|++.+..... .+.--.+++|||||||++.... ..+.
T Consensus 238 i~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Skls 311 (1033)
T PLN03142 238 IRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLS 311 (1033)
T ss_pred HHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHH
Confidence 999974 4667776765443322221 1 2357999999999876432 2223457899999999987643 4555
Q ss_pred HHHHhcCCCCCCCceEEEEeccCh----HHHHHHHHHhhcC--------------------------------cEEEEec
Q 007365 317 KIVQQMDMPPPGVRQTMLFSATFP----KEIQKLASDFLAN--------------------------------YVFLAVG 360 (606)
Q Consensus 317 ~i~~~l~~~~~~~~q~ll~SAT~~----~~i~~l~~~~l~~--------------------------------~~~~~~~ 360 (606)
+++..+. ....+++|+|+- .++..++..++.+ +.++.-.
T Consensus 312 kalr~L~-----a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 312 KTMRLFS-----TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred HHHHHhh-----cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhh
Confidence 6666652 234689999952 1221111110000 0000000
Q ss_pred c--ccCccCceeEEEEEe--------------------------------------------------------------
Q 007365 361 R--VGSSTDLIVQRVEYV-------------------------------------------------------------- 376 (606)
Q Consensus 361 ~--~~~~~~~i~~~~~~~-------------------------------------------------------------- 376 (606)
. +....+.....+..+
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~l 466 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHL 466 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHH
Confidence 0 000000000001111
Q ss_pred -ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCC---CC
Q 007365 377 -HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG---KT 452 (606)
Q Consensus 377 -~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g---~~ 452 (606)
..+.|...|..+|..... ...++|||+.....++.|.++|...++.+..|||.++..+|..+++.|... ..
T Consensus 467 ie~SgKl~lLdkLL~~Lk~-----~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~ 541 (1033)
T PLN03142 467 VENSGKMVLLDKLLPKLKE-----RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKF 541 (1033)
T ss_pred hhhhhHHHHHHHHHHHHHh-----cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCce
Confidence 112333344444443332 367899999999999999999999999999999999999999999999753 34
Q ss_pred cEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEE--EEecc
Q 007365 453 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLAT--AFFNE 507 (606)
Q Consensus 453 ~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~--~~~~~ 507 (606)
.+|++|.+++.|||+..+++||+||++||+..+.|++||+.|.|++..+. .|++.
T Consensus 542 VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 542 VFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred EEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999986554 44444
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.8e-26 Score=252.74 Aligned_cols=321 Identities=17% Similarity=0.199 Sum_probs=231.8
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|--. .+.-++.-|+.++||.|||++|.+|++...+... .|.||+|+++||.|.++++..+
T Consensus 82 ~~ydVQliG--gl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~-------------~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 82 RHFDVQLLG--GMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGK-------------GVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred CcCchHHhc--chHhcCCccccccCCCCchHHHHHHHHHHHhcCC-------------CEEEEeCCHHHHHHHHHHHHHH
Confidence 456666543 3333456799999999999999999987776442 2999999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhc-cccc-----cceeEEEEecccccccCC------
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA-RVSL-----QMIRYLALDEADRMLDMG------ 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~-~~~l-----~~~~~lVlDEah~~~~~g------ 310 (606)
....++++.+++++.+... +.-...|+|+++||+.| +++|... .++. ..+.++|+||+|.|+-..
T Consensus 147 ~~~lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HHhcCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 9999999999998877532 23334699999999999 8888765 3333 678999999999876320
Q ss_pred ----------CHHHHHHHHHhcCC-----------------------------------------------C--------
Q 007365 311 ----------FEPQIRKIVQQMDM-----------------------------------------------P-------- 325 (606)
Q Consensus 311 ----------f~~~i~~i~~~l~~-----------------------------------------------~-------- 325 (606)
+...+..++..+.. .
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 11111111111100 0
Q ss_pred ------------------------------------------------------------CCCC----------------
Q 007365 326 ------------------------------------------------------------PPGV---------------- 329 (606)
Q Consensus 326 ------------------------------------------------------------~~~~---------------- 329 (606)
....
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence 0000
Q ss_pred ceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEc
Q 007365 330 RQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVE 409 (606)
Q Consensus 330 ~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~ 409 (606)
.++.+||.|...+-.++.+.|--+. +.+....+....-.....+.....|...+++.+.+.... ..++||||.
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~V--v~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~-----GrpVLV~t~ 457 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDT--VVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRER-----GQPVLVGTV 457 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCE--EECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHc-----CCCEEEEeC
Confidence 0122344444333333333222222 222111111111112234556678888888887766543 888999999
Q ss_pred chhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCC--------------------
Q 007365 410 TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPH-------------------- 469 (606)
Q Consensus 410 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~-------------------- 469 (606)
|++.++.|+.+|...++++..||+++.+.+++.+.+.|+.|. |+|||++|+||+||.=
T Consensus 458 sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~ 535 (908)
T PRK13107 458 SIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKA 535 (908)
T ss_pred cHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHH
Confidence 999999999999999999999999999999999999999998 9999999999999962
Q ss_pred ------------c-----cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007365 470 ------------V-----AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 470 ------------v-----~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
| =|||--..+.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 536 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 536 KIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 2799999999999999999999999999999999997765
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.4e-25 Score=216.05 Aligned_cols=303 Identities=20% Similarity=0.249 Sum_probs=216.9
Q ss_pred CCCHHHHhHHHHH----hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 164 KPTPVQRHAIPIS----VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai~~i----~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
+++|.|+.+-..+ .+.+++|+.|-||+|||.. +++.++..++.. -.+.|.+|+...+..++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G------------~~vciASPRvDVclEl~~R 163 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQG------------GRVCIASPRVDVCLELYPR 163 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcC------------CeEEEecCcccchHHHHHH
Confidence 5899999887654 4568999999999999984 666777666543 3589999999999999988
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHH
Q 007365 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~ 319 (606)
++.-. .+..+.++||+.+...+ ..++|||...|+.+ .+.+++||+||+|..--. -.+.+..-+
T Consensus 164 lk~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~-~d~~L~~Av 226 (441)
T COG4098 164 LKQAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFS-DDQSLQYAV 226 (441)
T ss_pred HHHhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHH-------HhhccEEEEecccccccc-CCHHHHHHH
Confidence 88643 35678888988753221 58999999999886 345789999999975321 123444444
Q ss_pred HhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhh-------hHHHHHHHHH
Q 007365 320 QQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKR-------SHLMDLLHAQ 392 (606)
Q Consensus 320 ~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-------~~l~~ll~~~ 392 (606)
+.-. ...--+|.+|||.+++++.-+. ..+...+.+.......+.....+.+...-.|. ..|...|+..
T Consensus 227 ~~ar---k~~g~~IylTATp~k~l~r~~~--~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq 301 (441)
T COG4098 227 KKAR---KKEGATIYLTATPTKKLERKIL--KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ 301 (441)
T ss_pred HHhh---cccCceEEEecCChHHHHHHhh--hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHH
Confidence 4432 3445689999999987654443 23444444444444444444455555433222 2455666655
Q ss_pred HhcccCCCCceEEEEEcchhhHHHHHHHHHhC-C-CCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCc
Q 007365 393 VANGVHGKQSLTLVFVETKKGADALEHWLYMN-G-FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 470 (606)
Q Consensus 393 ~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v 470 (606)
..+ ..++|||+++.+..+.++..|+.. . ..+..+|+. ...|.+.++.|++|++.|||+|.+++||+.+|+|
T Consensus 302 ~~~-----~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~v 374 (441)
T COG4098 302 RKT-----GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNV 374 (441)
T ss_pred Hhc-----CCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccc
Confidence 433 788999999999999999999543 3 344678875 4688899999999999999999999999999999
Q ss_pred cEEEEecCC--CCHhHHHHHhhccccCCC--cceEEEEeccC
Q 007365 471 AHVVNFDLP--NDIDDYVHRIGRTGRAGK--SGLATAFFNEN 508 (606)
Q Consensus 471 ~~VI~~d~p--~s~~~y~QRiGR~gR~g~--~G~~~~~~~~~ 508 (606)
+++|.-.-- .+.+..+|..||+||.-. +|.+..|..-.
T Consensus 375 dV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 375 DVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred eEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 987654433 578899999999999533 46655544333
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=4.9e-27 Score=246.68 Aligned_cols=314 Identities=22% Similarity=0.242 Sum_probs=232.1
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
++-|+|+.||..+-.+..+|++|.|.+|||.++-.+|...+...+ ++|+.+|-++|.+|.++++..-
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-------------RVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-------------RVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-------------eEEeeChhhhhcchhHHHHHHH
Confidence 688999999999999999999999999999999888877665432 5999999999999999998765
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcC
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 323 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~ 323 (606)
... |.+.+|...+ ...+..||+|.+.|..+|-++.--+..+.|||+||+|.|-|....-.+++.+-.+
T Consensus 196 F~D----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll- 263 (1041)
T KOG0948|consen 196 FKD----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL- 263 (1041)
T ss_pred hcc----cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEec-
Confidence 444 3344555432 2346899999999999999887779999999999999999988777777666666
Q ss_pred CCCCCCceEEEEeccChHHHH--HHHHHhhcCcEEEEeccccCccCceeEEE----------EEeccc-----hhhhHHH
Q 007365 324 MPPPGVRQTMLFSATFPKEIQ--KLASDFLANYVFLAVGRVGSSTDLIVQRV----------EYVHES-----DKRSHLM 386 (606)
Q Consensus 324 ~~~~~~~q~ll~SAT~~~~i~--~l~~~~l~~~~~~~~~~~~~~~~~i~~~~----------~~~~~~-----~k~~~l~ 386 (606)
|++.+.+++|||+|+..+ +++...-..|..+....... ...|+| .+++++ +.+...+
T Consensus 264 ---P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRP---TPLQHyifP~ggdGlylvVDek~~FrednF~~am 337 (1041)
T KOG0948|consen 264 ---PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRP---TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAM 337 (1041)
T ss_pred ---cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCC---CcceeeeecCCCCeeEEEEecccccchHHHHHHH
Confidence 788899999999998754 23333334554444322211 112222 233332 2222233
Q ss_pred HHHHHHHhcc-------------------------------cCCCCceEEEEEcchhhHHHHHHHHHhC-----------
Q 007365 387 DLLHAQVANG-------------------------------VHGKQSLTLVFVETKKGADALEHWLYMN----------- 424 (606)
Q Consensus 387 ~ll~~~~~~~-------------------------------~~~~~~~~LVF~~s~~~~~~l~~~L~~~----------- 424 (606)
..|....... ...+-.++|||+-++++|+.++-.+...
T Consensus 338 ~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V 417 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV 417 (1041)
T ss_pred HHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH
Confidence 3222211110 0112457999999999999998777321
Q ss_pred ----------------------------CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE-
Q 007365 425 ----------------------------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN- 475 (606)
Q Consensus 425 ----------------------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~- 475 (606)
...+...|+++-+--++-+.-.|..|-+++|+||..++.|||.|.-++|+-
T Consensus 418 ~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~ 497 (1041)
T KOG0948|consen 418 ETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTA 497 (1041)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEee
Confidence 223456799999999999999999999999999999999999999777762
Q ss_pred ---ecC----CCCHhHHHHHhhccccCCC--cceEEEEeccC
Q 007365 476 ---FDL----PNDIDDYVHRIGRTGRAGK--SGLATAFFNEN 508 (606)
Q Consensus 476 ---~d~----p~s~~~y~QRiGR~gR~g~--~G~~~~~~~~~ 508 (606)
||= .-+.-+|+|+.|||||.|. .|.|++++++.
T Consensus 498 ~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 498 VRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 221 2367899999999999887 59999999753
No 101
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=6.6e-26 Score=249.13 Aligned_cols=339 Identities=19% Similarity=0.238 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEE
Q 007365 148 DLGEELNLNIRRCKYVKPTPVQRHAIPISVAG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALIL 226 (606)
Q Consensus 148 ~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~-~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil 226 (606)
.++++-..++. +...++++|...-++.+.+ .++++|||||+|||-++++-||+.+........ +..-...+++++
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dg--s~nl~~fKIVYI 370 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDG--SVNLAPFKIVYI 370 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccccc--ceecccceEEEE
Confidence 34444333333 4455999999999998887 799999999999999999999988865432110 111223469999
Q ss_pred ccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc--cccccceeEEEEeccc
Q 007365 227 APTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--RVSLQMIRYLALDEAD 304 (606)
Q Consensus 227 ~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~--~~~l~~~~~lVlDEah 304 (606)
+|...|++.|...+.+.....+++|.-.+|......+. ..+.+|+|+||+...-.-++. ....+-++++|+||+|
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh
Confidence 99999999999999888888899999998876543321 124799999999975544332 1234568899999999
Q ss_pred ccccCCCHHHHHHHHHhcCC---CCCCCceEEEEeccChHHHHHHHHHhh-cCcEEEEeccccCccCceeEEEEEeccch
Q 007365 305 RMLDMGFEPQIRKIVQQMDM---PPPGVRQTMLFSATFPKEIQKLASDFL-ANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 305 ~~~~~gf~~~i~~i~~~l~~---~~~~~~q~ll~SAT~~~~i~~l~~~~l-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
.+-| ...+.++.|+..... ......+++++|||+|+.. . ...|+ .++.-+.........-.+.|.++-+.++.
T Consensus 448 LLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~-D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 448 LLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE-D-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKK 524 (1674)
T ss_pred hccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchh-h-hHHHhccCcccccccCcccCcCCccceEeccccCC
Confidence 6544 356888777765421 1234567999999999853 2 33333 33322222222333344566666555443
Q ss_pred hh---hHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHh----------------------------------
Q 007365 381 KR---SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYM---------------------------------- 423 (606)
Q Consensus 381 k~---~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~---------------------------------- 423 (606)
.. ..+.+..-+.+... .+ ..++|||+.++++....++.++.
T Consensus 525 ~~~~~qamNe~~yeKVm~~-ag-k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dL 602 (1674)
T KOG0951|consen 525 PLKRFQAMNEACYEKVLEH-AG-KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDL 602 (1674)
T ss_pred chHHHHHHHHHHHHHHHHh-CC-CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhH
Confidence 32 33333333333221 22 37899999999887777766641
Q ss_pred ---CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEE----EecC------CCCHhHHHHHhh
Q 007365 424 ---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVV----NFDL------PNDIDDYVHRIG 490 (606)
Q Consensus 424 ---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI----~~d~------p~s~~~y~QRiG 490 (606)
..+.....|++|+..+|+.+.+.|..|.++|||+|..+++|+++|.-+++| -||+ +.++.+..||.|
T Consensus 603 kdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 603 KDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred HHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 135567789999999999999999999999999999999999999866666 3554 348899999999
Q ss_pred ccccCCCc
Q 007365 491 RTGRAGKS 498 (606)
Q Consensus 491 R~gR~g~~ 498 (606)
|+||.+-.
T Consensus 683 ragrp~~D 690 (1674)
T KOG0951|consen 683 RAGRPQYD 690 (1674)
T ss_pred hcCCCccC
Confidence 99997654
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=5.8e-26 Score=212.52 Aligned_cols=167 Identities=33% Similarity=0.568 Sum_probs=143.2
Q ss_pred CHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhh
Q 007365 166 TPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSY 245 (606)
Q Consensus 166 ~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~ 245 (606)
||+|.++++.+.+++++++.+|||+|||+++++|++..+.+.+ ..++||++|+++|+.|+.+.+.++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-----------DARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------SSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-----------CceEEEEeeccccccccccccccccc
Confidence 7999999999999999999999999999999999998887642 12599999999999999999999988
Q ss_pred cCCcEEEEEECCCChH-HHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCC
Q 007365 246 QTGVKVVVAYGGAPIN-QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 324 (606)
Q Consensus 246 ~~~~~~~~~~gg~~~~-~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~ 324 (606)
..++++..++++.... .+...+..+++|+|+||++|.+++......+.++++||+||+|.+.+..+...+..|+..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 70 NTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp TTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 7788999999988866 444455567999999999999999986667788999999999999998888889999888733
Q ss_pred CCCCCceEEEEeccChHHHHH
Q 007365 325 PPPGVRQTMLFSATFPKEIQK 345 (606)
Q Consensus 325 ~~~~~~q~ll~SAT~~~~i~~ 345 (606)
. ...|++++|||++..++.
T Consensus 150 ~--~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 150 F--KNIQIILLSATLPSNVEK 168 (169)
T ss_dssp T--TTSEEEEEESSSTHHHHH
T ss_pred C--CCCcEEEEeeCCChhHhh
Confidence 2 257899999999977664
No 103
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.6e-25 Score=248.62 Aligned_cols=322 Identities=22% Similarity=0.273 Sum_probs=229.0
Q ss_pred HhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007365 158 RRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 158 ~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
...+| .|-++|++++.++.++..+++|||||+|||.+.-+++...+...+ ++++++|.++|.+|.+
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-------------rviYTsPIKALsNQKy 179 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-------------RVIYTSPIKALSNQKY 179 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-------------ceEeccchhhhhhhHH
Confidence 34455 789999999999999999999999999999998888776554432 3999999999999999
Q ss_pred HHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHH
Q 007365 238 DEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 317 (606)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~ 317 (606)
.++.......--.+.+++|..++ ..++.++|+|.+.|.+++-++...+..+.+||+||+|.|.|......++.
T Consensus 180 rdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 180 RDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred HHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHH
Confidence 88876432211123445555543 34578999999999999999888899999999999999999999999999
Q ss_pred HHHhcCCCCCCCceEEEEeccChHHH--HHHHHHhhcCcEEEEeccccCccCceeEE-------EEEeccchh-----hh
Q 007365 318 IVQQMDMPPPGVRQTMLFSATFPKEI--QKLASDFLANYVFLAVGRVGSSTDLIVQR-------VEYVHESDK-----RS 383 (606)
Q Consensus 318 i~~~l~~~~~~~~q~ll~SAT~~~~i--~~l~~~~l~~~~~~~~~~~~~~~~~i~~~-------~~~~~~~~k-----~~ 383 (606)
++..+ |...++++||||+|+.. ..++...-..++.+.+.... ..+ +.++ +..++...+ ..
T Consensus 253 ~Ii~l----P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~R-pvP-L~~~~~~~~~l~~lvde~~~~~~~~~~ 326 (1041)
T COG4581 253 VIILL----PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHR-PVP-LEHFVYVGKGLFDLVDEKKKFNAENFP 326 (1041)
T ss_pred HHHhc----CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCC-CCC-eEEEEecCCceeeeecccccchhhcch
Confidence 99998 88889999999997653 23333222233333222111 111 1111 111221111 00
Q ss_pred HHHHHHH---HHHhc--------------------------------ccCCCCceEEEEEcchhhHHHHHHHHHh-----
Q 007365 384 HLMDLLH---AQVAN--------------------------------GVHGKQSLTLVFVETKKGADALEHWLYM----- 423 (606)
Q Consensus 384 ~l~~ll~---~~~~~--------------------------------~~~~~~~~~LVF~~s~~~~~~l~~~L~~----- 423 (606)
.....+. ....+ ....+-.++|+|+-+++.|+.++..|..
T Consensus 327 ~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~ 406 (1041)
T COG4581 327 SANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVL 406 (1041)
T ss_pred hhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhccccccc
Confidence 0111111 00000 0011245799999999999999877731
Q ss_pred -----------------------CCCC-------------cEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCC
Q 007365 424 -----------------------NGFP-------------ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI 467 (606)
Q Consensus 424 -----------------------~~~~-------------~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDi 467 (606)
.+++ +...|++|-+..++.+...|..|-++||+||.+++.|+|.
T Consensus 407 ~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm 486 (1041)
T COG4581 407 TEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM 486 (1041)
T ss_pred CCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCC
Confidence 1221 2357999999999999999999999999999999999999
Q ss_pred CCccEEE----Eec----CCCCHhHHHHHhhccccCCCc--ceEEEEec
Q 007365 468 PHVAHVV----NFD----LPNDIDDYVHRIGRTGRAGKS--GLATAFFN 506 (606)
Q Consensus 468 p~v~~VI----~~d----~p~s~~~y~QRiGR~gR~g~~--G~~~~~~~ 506 (606)
|.-++|+ .+| .+-++.+|+|+.|||||.|.+ |.+++.-.
T Consensus 487 Partvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 487 PARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred cccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9877766 222 234789999999999999874 77777743
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5.3e-25 Score=231.60 Aligned_cols=312 Identities=17% Similarity=0.180 Sum_probs=214.5
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh-
Q 007365 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF- 243 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~- 243 (606)
.+.+-.+.+..+..++.+|+.++||||||+. +|- .+.+..... .-.+.|+.|+|.-|..++..+..-
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ipQ--yL~eaG~~~--------~g~I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQ--IPQ--YLAEAGFAS--------SGKIACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCcccc--HhH--HHHhccccc--------CCcEEeecCchHHHHHHHHHHHHHh
Confidence 3456667888889999999999999999994 442 233332221 123999999999998888766543
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccc-cccCCCHHHHHHHHHhc
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~-~~~~gf~~~i~~i~~~l 322 (606)
.-..|-.|...+-=.+ .......|.+.|.|.|+..+..+. .|+.+++|||||||. -+. .+.+.-+++.+
T Consensus 120 ~~~lG~~VGY~IRFed------~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~---TDiLlGlLKki 189 (674)
T KOG0922|consen 120 GCQLGEEVGYTIRFED------STSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLH---TDILLGLLKKI 189 (674)
T ss_pred CCCcCceeeeEEEecc------cCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhH---HHHHHHHHHHH
Confidence 2223333322211110 011236899999999999888777 499999999999995 111 12333333333
Q ss_pred CCCCCCCceEEEEeccChHHHHHHHHHhhcC-cEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCC
Q 007365 323 DMPPPGVRQTMLFSATFPKEIQKLASDFLAN-YVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQ 401 (606)
Q Consensus 323 ~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~ 401 (606)
-.. .++.++|++|||+..+ ....|+.+ +++...++... +...+..-+..+-....+..+...... .+.
T Consensus 190 ~~~-R~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~fP----Vei~y~~~p~~dYv~a~~~tv~~Ih~~---E~~ 258 (674)
T KOG0922|consen 190 LKK-RPDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRTFP----VEILYLKEPTADYVDAALITVIQIHLT---EPP 258 (674)
T ss_pred Hhc-CCCceEEEEeeeecHH---HHHHHhcCCceEeecCCCCc----eeEEeccCCchhhHHHHHHHHHHHHcc---CCC
Confidence 211 4567899999998863 34444544 55544433221 222222223333333333333333333 235
Q ss_pred ceEEEEEcchhhHHHHHHHHHhC------CC--CcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEE
Q 007365 402 SLTLVFVETKKGADALEHWLYMN------GF--PATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHV 473 (606)
Q Consensus 402 ~~~LVF~~s~~~~~~l~~~L~~~------~~--~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~V 473 (606)
+-+|||....++++.+++.|.+. .. -+.++|+.|+.+++.++++.-..|..+|++||+++++.|.||.+.+|
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YV 338 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYV 338 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEE
Confidence 56999999999999999999764 11 24689999999999999999999999999999999999999999999
Q ss_pred EEe--------cC----------CCCHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007365 474 VNF--------DL----------PNDIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 474 I~~--------d~----------p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
|+- ++ |-|.++-.||.|||||. .+|.|+.+|++++.
T Consensus 339 VDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 339 VDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred EcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 953 33 55888999999999999 68999999997654
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=3.3e-25 Score=240.30 Aligned_cols=344 Identities=20% Similarity=0.243 Sum_probs=248.2
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhHH--HHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEE
Q 007365 149 LGEELNLNIRRCKYVKPTPVQRHAI--PISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALIL 226 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~~ai--~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil 226 (606)
++.......+..+..+++.+|.+++ +.+++++++|..+||+.|||+++-+-++..++-.+. .++.+
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr------------~~lli 275 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR------------NVLLI 275 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh------------ceeEe
Confidence 3444444555667788999999998 678889999999999999999999888887775432 28889
Q ss_pred ccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc--cccccceeEEEEeccc
Q 007365 227 APTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--RVSLQMIRYLALDEAD 304 (606)
Q Consensus 227 ~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~--~~~l~~~~~lVlDEah 304 (606)
.|....+..-.+.+..|....|+.+...+|..+... ..+..++.|||.++-..+++.- .-.+..+.+||+||.|
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh 351 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH 351 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee
Confidence 999888888888888998888999988776554322 1223689999999865544331 1146778999999999
Q ss_pred ccccCCCHHHHHHHHHhcCCC-CCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhh
Q 007365 305 RMLDMGFEPQIRKIVQQMDMP-PPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRS 383 (606)
Q Consensus 305 ~~~~~gf~~~i~~i~~~l~~~-~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 383 (606)
.+.+.+....++.++.++... .....|+|+||||+|+. .++++++...++.+-.+.-...+.+.--....... +..
T Consensus 352 mi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~ 428 (1008)
T KOG0950|consen 352 MIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RNK 428 (1008)
T ss_pred eeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccch-hhH
Confidence 999999888888777765322 12336899999999884 56667776554443222222222221111111111 222
Q ss_pred HHHH-------------------HHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHh---------------------
Q 007365 384 HLMD-------------------LLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYM--------------------- 423 (606)
Q Consensus 384 ~l~~-------------------ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~--------------------- 423 (606)
.+.+ +..+.. .++..+||||++++.|+.++..+..
T Consensus 429 ~lr~ia~l~~~~~g~~dpD~~v~L~tet~-----~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s 503 (1008)
T KOG0950|consen 429 VLREIANLYSSNLGDEDPDHLVGLCTETA-----PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSIS 503 (1008)
T ss_pred HHHHhhhhhhhhcccCCCcceeeehhhhh-----hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHH
Confidence 2222 222221 2245699999999999998865521
Q ss_pred -----------------CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEec----CCCCH
Q 007365 424 -----------------NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFD----LPNDI 482 (606)
Q Consensus 424 -----------------~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d----~p~s~ 482 (606)
.-+.+..+|.+++..+|+.+...|+.|...||+||+.++.|++.|...++|-.- ...+.
T Consensus 504 ~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~ 583 (1008)
T KOG0950|consen 504 NLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTR 583 (1008)
T ss_pred hHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhh
Confidence 124567789999999999999999999999999999999999999999888543 24578
Q ss_pred hHHHHHhhccccCCC--cceEEEEeccCChhhHHHH
Q 007365 483 DDYVHRIGRTGRAGK--SGLATAFFNENNLSLARPL 516 (606)
Q Consensus 483 ~~y~QRiGR~gR~g~--~G~~~~~~~~~~~~~~~~l 516 (606)
-+|.||+|||||+|- .|.+++.+...+.....+|
T Consensus 584 ~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 584 LEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred hhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 899999999999876 5899999998887665543
No 106
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=6.8e-23 Score=216.68 Aligned_cols=319 Identities=20% Similarity=0.307 Sum_probs=222.5
Q ss_pred CCCHHHHhHHHHHhc----CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVA----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~----~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
.+++||.+.++++.+ +-+.|+..++|.|||+. .+.++..+....... +| .||+||-..|. .|..+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~--------GP-fLVi~P~StL~-NW~~E 235 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIP--------GP-FLVIAPKSTLD-NWMNE 235 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCC--------CC-eEEEeeHhhHH-HHHHH
Confidence 589999999987644 57899999999999996 445555554422221 22 79999988875 48999
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHH-HH--hcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHH
Q 007365 240 AKKFSYQTGVKVVVAYGGAPINQQLR-EL--ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 316 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~-~l--~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~ 316 (606)
+++|+ +.+++++++|.......+. .+ ....+|+|+|++..+.- ...+.--.++|||+|||||+.++. ..+.
T Consensus 236 f~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~ 309 (971)
T KOG0385|consen 236 FKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLS 309 (971)
T ss_pred HHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHH
Confidence 99997 4578888888764433322 22 22579999999998764 333334568999999999998864 5666
Q ss_pred HHHHhcCCCCCCCceEEEEeccCh-HHHHH---HHHHhhcC---------------------------------------
Q 007365 317 KIVQQMDMPPPGVRQTMLFSATFP-KEIQK---LASDFLAN--------------------------------------- 353 (606)
Q Consensus 317 ~i~~~l~~~~~~~~q~ll~SAT~~-~~i~~---l~~~~l~~--------------------------------------- 353 (606)
+++..+... ..++++.|+- +.+.+ ++..+|.+
T Consensus 310 ~~lr~f~~~-----nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 310 KILREFKTD-----NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred HHHHHhccc-----ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHH
Confidence 777777432 3688888841 11111 11000000
Q ss_pred ----------c--EEEEecc------------------ccCcc------------------------------CceeEEE
Q 007365 354 ----------Y--VFLAVGR------------------VGSST------------------------------DLIVQRV 373 (606)
Q Consensus 354 ----------~--~~~~~~~------------------~~~~~------------------------------~~i~~~~ 373 (606)
. +.+.++. ..... +.....-
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde 464 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 464 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcch
Confidence 0 0000000 00000 0000011
Q ss_pred EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCC--
Q 007365 374 EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK-- 451 (606)
Q Consensus 374 ~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~-- 451 (606)
+.+..+.|...|-.+|...... +.+||||.+-....+.|.+++...+|....|.|.++.++|...++.|..-.
T Consensus 465 hLv~nSGKm~vLDkLL~~Lk~~-----GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~ 539 (971)
T KOG0385|consen 465 HLVTNSGKMLVLDKLLPKLKEQ-----GHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSE 539 (971)
T ss_pred HHHhcCcceehHHHHHHHHHhC-----CCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcc
Confidence 1222345555566666555443 789999999999999999999999999999999999999999999998654
Q ss_pred -CcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceE--EEEeccCC
Q 007365 452 -TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA--TAFFNENN 509 (606)
Q Consensus 452 -~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~--~~~~~~~~ 509 (606)
.-+|++|.+..-|||+..+++||.||..||+..-+|...||.|.|++..+ +.|++.+-
T Consensus 540 ~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 540 KFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred eEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 34799999999999999999999999999999999999999999997654 55555543
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=7.5e-24 Score=220.43 Aligned_cols=316 Identities=18% Similarity=0.168 Sum_probs=216.8
Q ss_pred CCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 160 CKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 160 ~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
.+....+++-.+.+.++..++.+||.++||||||+ .+|- .+...... ..+.++-|..|+|.-|+.++..
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQ--yL~EaGyt-------k~gk~IgcTQPRRVAAmSVAaR 329 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQ--YLYEAGYT-------KGGKKIGCTQPRRVAAMSVAAR 329 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccH--HHHhcccc-------cCCceEeecCcchHHHHHHHHH
Confidence 35556788999999999999999999999999999 4553 23333222 1123488999999999998876
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccc-cccCCCHHHHHHH
Q 007365 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEPQIRKI 318 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~-~~~~gf~~~i~~i 318 (606)
+..- .+++...-+|-.-.-+.. .....-|-++|.|.|+.-+.... .|.++++||+||||. -+.. +.+-.+
T Consensus 330 VA~E---MgvkLG~eVGYsIRFEdc--TSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~T---DILfgL 400 (902)
T KOG0923|consen 330 VAEE---MGVKLGHEVGYSIRFEDC--TSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHT---DILFGL 400 (902)
T ss_pred HHHH---hCcccccccceEEEeccc--cCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhh---hHHHHH
Confidence 6542 222221111111100000 01124688999999998877655 599999999999995 3322 222233
Q ss_pred HHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccC
Q 007365 319 VQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVH 398 (606)
Q Consensus 319 ~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 398 (606)
+..+... .++..+|+.|||+..+ ++...|-.-++|...++.. .+...|...++.+-....+.-+..+...+
T Consensus 401 vKDIar~-RpdLKllIsSAT~DAe--kFS~fFDdapIF~iPGRRy----PVdi~Yt~~PEAdYldAai~tVlqIH~tq-- 471 (902)
T KOG0923|consen 401 VKDIARF-RPDLKLLISSATMDAE--KFSAFFDDAPIFRIPGRRY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQ-- 471 (902)
T ss_pred HHHHHhh-CCcceEEeeccccCHH--HHHHhccCCcEEeccCccc----ceeeecccCCchhHHHHHHhhheeeEecc--
Confidence 3332211 4678899999998773 3444444456665544322 12223333444444444444443333332
Q ss_pred CCCceEEEEEcchhhHHHHHHHHHhC---------CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCC
Q 007365 399 GKQSLTLVFVETKKGADALEHWLYMN---------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPH 469 (606)
Q Consensus 399 ~~~~~~LVF~~s~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~ 469 (606)
+.+-+|||....++++...+.|.+. .+-+++||+.+++..+..|++--..|..+|++||++|++.|.|++
T Consensus 472 -p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 472 -PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred -CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecC
Confidence 3466999999999888877777542 345678999999999999999999999999999999999999999
Q ss_pred ccEEEEecC------------------CCCHhHHHHHhhccccCCCcceEEEEec
Q 007365 470 VAHVVNFDL------------------PNDIDDYVHRIGRTGRAGKSGLATAFFN 506 (606)
Q Consensus 470 v~~VI~~d~------------------p~s~~~y~QRiGR~gR~g~~G~~~~~~~ 506 (606)
|.+||.-.+ |-|.++-.||.|||||.| +|+|+.+|+
T Consensus 551 I~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 551 IKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred eEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 999995333 457888899999999994 899999998
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=3e-23 Score=234.82 Aligned_cols=327 Identities=21% Similarity=0.209 Sum_probs=212.0
Q ss_pred CCHHHHhHHHHHhcC---C-CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHH
Q 007365 165 PTPVQRHAIPISVAG---R-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 240 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~---~-d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~ 240 (606)
.++.|..++..++.. . .+++.||||+|||.+.+.+++..+.... ...++++++.|++.+++++++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---------~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI---------KLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc---------cccceEEEEccHHHHHHHHHHHH
Confidence 588999999887764 4 7889999999999999988887665521 12356999999999999999999
Q ss_pred HHhhhcCCcEEEEEECCCChHHHHHH-----H---------hcCCcEEEecHHHHHHHH-Hhcccc---ccceeEEEEec
Q 007365 241 KKFSYQTGVKVVVAYGGAPINQQLRE-----L---------ERGVDILVATPGRLVDLL-ERARVS---LQMIRYLALDE 302 (606)
Q Consensus 241 ~~~~~~~~~~~~~~~gg~~~~~~~~~-----l---------~~~~~Ilv~Tp~~L~~~l-~~~~~~---l~~~~~lVlDE 302 (606)
+.+.....+.....++.......... . ..-..++++||-.+.... ...... .-..+++||||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 98754433322211222211110000 0 001345555555444421 111111 12346899999
Q ss_pred ccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccc--cCccCceeEEEEEeccch
Q 007365 303 ADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRV--GSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 303 ah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 380 (606)
+|.+.+......+..++..+. .....+|+||||+|......+...+.....+..... ....+........+....
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~---~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 423 (733)
T COG1203 347 VHLYADETMLAALLALLEALA---EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVED 423 (733)
T ss_pred HHhhcccchHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhh
Confidence 998877644455555555543 234569999999999998888887765433332111 000000000000000000
Q ss_pred hh-hHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhc----cCCCCcEE
Q 007365 381 KR-SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSF----KSGKTPIL 455 (606)
Q Consensus 381 k~-~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F----~~g~~~iL 455 (606)
.. ..+...+.... .+..+++|.|||++.|..++..|+..+.++..|||.+...+|.+.++.+ +.....|+
T Consensus 424 ~~~~~~~~~~~~~~-----~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~Iv 498 (733)
T COG1203 424 GPQEELIELISEEV-----KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIV 498 (733)
T ss_pred hhhHhhhhcchhhh-----ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEE
Confidence 00 11222222222 2477899999999999999999999887899999999999999988854 45678899
Q ss_pred EEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCC--CcceEEEEeccCChh
Q 007365 456 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG--KSGLATAFFNENNLS 511 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g--~~G~~~~~~~~~~~~ 511 (606)
|||+|++.||||. .+++| .-+..++..+||+||++|-| ..|.++++...+...
T Consensus 499 VaTQVIEagvDid-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 499 VATQVIEAGVDID-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred EEeeEEEEEeccc-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 9999999999994 55554 33344899999999999999 567777776654433
No 109
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.5e-23 Score=218.49 Aligned_cols=311 Identities=17% Similarity=0.212 Sum_probs=205.5
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.....+.+.+..+..++.+||.++||||||+.. | +.++...... ...+-|..|+|.-|..++..+..-
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl--~--QyL~edGY~~--------~GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQL--A--QYLYEDGYAD--------NGMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhh--H--HHHHhccccc--------CCeeeecCchHHHHHHHHHHHHHH
Confidence 345566677777888899999999999999953 2 2333333221 125889999999999988776653
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccc-cccCCCHH-HHHHHHHh
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEP-QIRKIVQQ 321 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~-~~~~gf~~-~i~~i~~~ 321 (606)
. ++.....+|-.-.-+.. .....-|-++|.|.|+....... .|..++.||+||||. -++....- .++.++..
T Consensus 424 M---~~~lG~~VGYsIRFEdv--T~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~lar 497 (1042)
T KOG0924|consen 424 M---GVTLGDTVGYSIRFEDV--TSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR 497 (1042)
T ss_pred h---CCccccccceEEEeeec--CCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHh
Confidence 2 22221111111100000 01235688999999987665544 588999999999995 23322111 12222222
Q ss_pred cCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCC
Q 007365 322 MDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQ 401 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~ 401 (606)
..+..+|.+|||+.. +++...|-.-+.|...++... +...+. ...-...+...++..+........
T Consensus 498 -----RrdlKliVtSATm~a--~kf~nfFgn~p~f~IpGRTyP----V~~~~~---k~p~eDYVeaavkq~v~Ihl~~~~ 563 (1042)
T KOG0924|consen 498 -----RRDLKLIVTSATMDA--QKFSNFFGNCPQFTIPGRTYP----VEIMYT---KTPVEDYVEAAVKQAVQIHLSGPP 563 (1042)
T ss_pred -----hccceEEEeeccccH--HHHHHHhCCCceeeecCCccc----eEEEec---cCchHHHHHHHHhhheEeeccCCC
Confidence 346789999999765 455555554555544433221 111111 122222233333333332223345
Q ss_pred ceEEEEEcchhhHHHHHHHHH----hC------CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCcc
Q 007365 402 SLTLVFVETKKGADALEHWLY----MN------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVA 471 (606)
Q Consensus 402 ~~~LVF~~s~~~~~~l~~~L~----~~------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~ 471 (606)
+-+|||....+.++..+..+. +. ++.+++|++.|++.-+.++++.-..|..+++|||++|++.|.||.+.
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~ 643 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIR 643 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceE
Confidence 679999998877665554443 22 67789999999999999999999999999999999999999999999
Q ss_pred EEEEecC------------------CCCHhHHHHHhhccccCCCcceEEEEecc
Q 007365 472 HVVNFDL------------------PNDIDDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 472 ~VI~~d~------------------p~s~~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
+||...+ |-|.++--||.|||||. .+|.||.+|++
T Consensus 644 yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe 696 (1042)
T KOG0924|consen 644 YVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTE 696 (1042)
T ss_pred EEEecCceeeeecccccccceeEEEechhccchhhccccCCC-CCcceeeehhh
Confidence 9996443 56788889999999998 58999999986
No 110
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=5.6e-22 Score=219.82 Aligned_cols=136 Identities=24% Similarity=0.372 Sum_probs=120.5
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEE
Q 007365 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 457 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 457 (606)
...+...|++.+...... ..++||||++++.++.|+++|...++++..+|+++++.+|.++++.|+.|++.||||
T Consensus 424 ~~~qi~~Ll~eI~~~~~~-----g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~ 498 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVAR-----NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVG 498 (655)
T ss_pred ccchHHHHHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEE
Confidence 344566677766665433 678999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEec-----CCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHH
Q 007365 458 TDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAEL 519 (606)
Q Consensus 458 T~v~~~GlDip~v~~VI~~d-----~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~ 519 (606)
|+++++|+|+|++++||++| .|.+..+|+||+|||||. ..|.|++|++..+......+.+.
T Consensus 499 t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 499 INLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred cChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999999999998 799999999999999998 78999999998776666655554
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.2e-22 Score=222.91 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=119.7
Q ss_pred ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE
Q 007365 377 HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 456 (606)
Q Consensus 377 ~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 456 (606)
....|...+.+.+..... +..++||||+|++.++.|+.+|...++++..||+ .+.+|+..+..|..+...|+|
T Consensus 579 t~~eK~~Ali~~I~~~~~-----~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtI 651 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQK-----KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTI 651 (1025)
T ss_pred CHHHHHHHHHHHHHHHhh-----CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEE
Confidence 345677777777766543 3788999999999999999999999999999997 688999999999999999999
Q ss_pred EccccccCCCCC---Ccc-----EEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhH----HHHHHHHHHhc
Q 007365 457 ATDVAARGLDIP---HVA-----HVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLA----RPLAELMQESN 524 (606)
Q Consensus 457 aT~v~~~GlDip---~v~-----~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~----~~l~~~l~~~~ 524 (606)
||++|+||+||+ .|. +||+++.|.+...|.||+|||||.|.+|.+++|++.+|.-+- +.+..++....
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~ 731 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLG 731 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcC
Confidence 999999999999 554 459999999999999999999999999999999998765321 23555555443
No 112
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8e-23 Score=216.37 Aligned_cols=316 Identities=18% Similarity=0.205 Sum_probs=198.8
Q ss_pred HHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCC
Q 007365 169 QRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTG 248 (606)
Q Consensus 169 Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~ 248 (606)
-++++.+|.++-.+|||++||||||+. +|-+ ++...... +.. ...-.+=|..|+|.-|..++..+..-....+
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQF--LYEAGf~s-~~~--~~~gmIGITqPRRVAaiamAkRVa~EL~~~~ 333 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQ--VPQF--LYEAGFAS-EQS--SSPGMIGITQPRRVAAIAMAKRVAFELGVLG 333 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCcccc--chHH--HHHcccCC-ccC--CCCCeeeecCchHHHHHHHHHHHHHHhccCc
Confidence 345667788888999999999999994 4422 22222211 111 1122688999999988887766543221122
Q ss_pred cE--EEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccc-cC----CCHHHHHHHHHh
Q 007365 249 VK--VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-DM----GFEPQIRKIVQQ 321 (606)
Q Consensus 249 ~~--~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~-~~----gf~~~i~~i~~~ 321 (606)
-. ..+-+.++ +.....|.++|.|.|+.-++++. .|..++.|||||||.=. .. |+...+..+-..
T Consensus 334 ~eVsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 334 SEVSYQIRFDGT--------IGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred cceeEEEEeccc--------cCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHH
Confidence 22 22333333 22346899999999999998775 48999999999999622 11 111111122111
Q ss_pred cC--CCCCCCceEEEEeccChHHHHH-HHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccC
Q 007365 322 MD--MPPPGVRQTMLFSATFPKEIQK-LASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVH 398 (606)
Q Consensus 322 l~--~~~~~~~q~ll~SAT~~~~i~~-l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 398 (606)
+. ...-....+|+||||+.-.-.. -...|-..+-.+.+..... .+. + ..........+.+.....+.....
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQf---PVs--I-HF~krT~~DYi~eAfrKtc~IH~k 478 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQF---PVS--I-HFNKRTPDDYIAEAFRKTCKIHKK 478 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccC---ceE--E-EeccCCCchHHHHHHHHHHHHhhc
Confidence 11 0112356799999997432110 0011111122232221111 111 1 122233335555555544433333
Q ss_pred CCCceEEEEEcchhhHHHHHHHHHhC------------------------------------------------------
Q 007365 399 GKQSLTLVFVETKKGADALEHWLYMN------------------------------------------------------ 424 (606)
Q Consensus 399 ~~~~~~LVF~~s~~~~~~l~~~L~~~------------------------------------------------------ 424 (606)
-+.+.+|||+....+++.|++.|++.
T Consensus 479 LP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~ 558 (1172)
T KOG0926|consen 479 LPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVD 558 (1172)
T ss_pred CCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhc
Confidence 34778999999999999999998510
Q ss_pred ---------------------------------------------CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007365 425 ---------------------------------------------GFPATTIHGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 425 ---------------------------------------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
-+-|++|++-++..++.++++.-..|..-++|||+
T Consensus 559 ~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTN 638 (1172)
T KOG0926|consen 559 SGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATN 638 (1172)
T ss_pred ccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEecc
Confidence 12356677778888999999999999999999999
Q ss_pred ccccCCCCCCccEEEE--------ecCCC----------CHhHHHHHhhccccCCCcceEEEEecc
Q 007365 460 VAARGLDIPHVAHVVN--------FDLPN----------DIDDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 460 v~~~GlDip~v~~VI~--------~d~p~----------s~~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
||++.|.||+|.+||. ||.-. |.++--||.|||||.| +|.||.||+.
T Consensus 639 VAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 639 VAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred chhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9999999999999995 55443 4445569999999995 7999999985
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=8.5e-22 Score=212.07 Aligned_cols=301 Identities=22% Similarity=0.289 Sum_probs=198.1
Q ss_pred CCCCHHHHhHHHHHhc----C-CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVA----G-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~----~-~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
..++.||..||..+.+ + +.+|+++.||+|||.+ .+.++..|++....+ ++|+|+-++.|+.|.+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~~K----------RVLFLaDR~~Lv~QA~ 232 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGWVK----------RVLFLADRNALVDQAY 232 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcchhh----------eeeEEechHHHHHHHH
Confidence 3589999999976543 4 5589999999999997 456777888876655 3999999999999999
Q ss_pred HHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc-----cccccceeEEEEecccccccCCCH
Q 007365 238 DEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----RVSLQMIRYLALDEADRMLDMGFE 312 (606)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~-----~~~l~~~~~lVlDEah~~~~~gf~ 312 (606)
..+..|..... .+.. ..+... ...++|.|+|+.++...+... ++....+++||+|||||-.-
T Consensus 233 ~af~~~~P~~~-~~n~-i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---- 299 (875)
T COG4096 233 GAFEDFLPFGT-KMNK-IEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---- 299 (875)
T ss_pred HHHHHhCCCcc-ceee-eecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH----
Confidence 99998864422 1211 111111 114799999999999888654 34566799999999998543
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHH-------------------HhhcCcEEEEecc----ccCccC--
Q 007365 313 PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS-------------------DFLANYVFLAVGR----VGSSTD-- 367 (606)
Q Consensus 313 ~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~-------------------~~l~~~~~~~~~~----~~~~~~-- 367 (606)
.....|+.++. .- +++++||+...+..-.- -||.+|..+.+.. .+...+
T Consensus 300 ~~~~~I~dYFd----A~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~ 373 (875)
T COG4096 300 SEWSSILDYFD----AA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAG 373 (875)
T ss_pred hhhHHHHHHHH----HH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCcc
Confidence 34446666652 11 34459997654332222 2333332222211 110000
Q ss_pred ---------ce---eEEEEEec------cchhhhHHHHHHHHHHhcccCCC-CceEEEEEcchhhHHHHHHHHHhC----
Q 007365 368 ---------LI---VQRVEYVH------ESDKRSHLMDLLHAQVANGVHGK-QSLTLVFVETKKGADALEHWLYMN---- 424 (606)
Q Consensus 368 ---------~i---~~~~~~~~------~~~k~~~l~~ll~~~~~~~~~~~-~~~~LVF~~s~~~~~~l~~~L~~~---- 424 (606)
.+ .+.+...+ -....+.+...+.+.+.....+. ..||||||.+..+|+.+...|...
T Consensus 374 serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~ 453 (875)
T COG4096 374 SEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY 453 (875)
T ss_pred chhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc
Confidence 01 00011111 01122444555555554432222 678999999999999999998654
Q ss_pred -CCCcEEeeCccCHHHHHHHHHhccC-C-CCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccC
Q 007365 425 -GFPATTIHGDRTQQERELALRSFKS-G-KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495 (606)
Q Consensus 425 -~~~~~~lhg~~~~~~R~~~l~~F~~-g-~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~ 495 (606)
+--+..|.++-.+.+ ..++.|.. . .-+|.|+.+++.+|||+|.|..+|.+-.-.|...|.|++||.-|.
T Consensus 454 ~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 454 NGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 344667777654433 34555544 3 345888889999999999999999999999999999999999993
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.4e-20 Score=205.61 Aligned_cols=287 Identities=27% Similarity=0.406 Sum_probs=197.0
Q ss_pred HhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007365 158 RRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 158 ~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
++.-..+|+..|+--...++.|+..-+.||||.|||+--++..+ ++..+ +.+++||+||+.|+.|.+
T Consensus 76 ~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl--~~a~k-----------gkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 76 KKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL--YLAKK-----------GKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH--HHHhc-----------CCeEEEEecCHHHHHHHH
Confidence 33333489999999889999999999999999999984333222 22221 135999999999999999
Q ss_pred HHHHHhhhcCC-cEEEEEECCC-ChHH---HHHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEEecccccccC--
Q 007365 238 DEAKKFSYQTG-VKVVVAYGGA-PINQ---QLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM-- 309 (606)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~gg~-~~~~---~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~-- 309 (606)
+.+++|+...+ .++.++|.+. +..+ .+..+.+ +.||+|+|.+-|...++.- .-.++++|++|.+|.++..
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccc
Confidence 99999986554 4444434443 3322 2334444 5899999988887765532 1246899999999976643
Q ss_pred ---------CCHHH-------HHHHHHhcC--------------------CCCCCCceEEEEeccChH-H-HHHHHHHhh
Q 007365 310 ---------GFEPQ-------IRKIVQQMD--------------------MPPPGVRQTMLFSATFPK-E-IQKLASDFL 351 (606)
Q Consensus 310 ---------gf~~~-------i~~i~~~l~--------------------~~~~~~~q~ll~SAT~~~-~-i~~l~~~~l 351 (606)
||.++ +..+...+. ....+.-+++..|||..+ . -..+.+.+|
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 33331 111111111 011244578999999733 2 223444444
Q ss_pred cCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcc---hhhHHHHHHHHHhCCCCc
Q 007365 352 ANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVET---KKGADALEHWLYMNGFPA 428 (606)
Q Consensus 352 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s---~~~~~~l~~~L~~~~~~~ 428 (606)
. ..++.......+|...+... .....+.++++.. ..-.|||++. ++.+++|+++|+..|+++
T Consensus 301 g----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~l--------G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a 365 (1187)
T COG1110 301 G----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKL--------GDGGLIFVPIDYGREKAEELAEYLRSHGINA 365 (1187)
T ss_pred C----CccCccchhhhheeeeeccC---ccHHHHHHHHHHh--------CCCeEEEEEcHHhHHHHHHHHHHHHhcCceE
Confidence 3 22333333344554444333 5555666666665 4458999999 999999999999999999
Q ss_pred EEeeCccCHHHHHHHHHhccCCCCcEEEEc----cccccCCCCCC-ccEEEEecCC
Q 007365 429 TTIHGDRTQQERELALRSFKSGKTPILVAT----DVAARGLDIPH-VAHVVNFDLP 479 (606)
Q Consensus 429 ~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT----~v~~~GlDip~-v~~VI~~d~p 479 (606)
..+|+. .++.++.|..|+++|||.+ .++-||||+|. +.++|+++.|
T Consensus 366 ~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 366 ELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999983 3788999999999999976 58999999997 7899998887
No 115
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.3e-20 Score=192.97 Aligned_cols=166 Identities=25% Similarity=0.310 Sum_probs=130.2
Q ss_pred ceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEc
Q 007365 330 RQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVE 409 (606)
Q Consensus 330 ~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~ 409 (606)
.|+|.+|||+...-..... +.+.-.+.+. +..+...+...+.....+.|+..+...... +.++||-+-
T Consensus 387 ~q~i~VSATPg~~E~e~s~----~~vveQiIRP---TGLlDP~ievRp~~~QvdDL~~EI~~r~~~-----~eRvLVTtL 454 (663)
T COG0556 387 PQTIYVSATPGDYELEQSG----GNVVEQIIRP---TGLLDPEIEVRPTKGQVDDLLSEIRKRVAK-----NERVLVTTL 454 (663)
T ss_pred CCEEEEECCCChHHHHhcc----CceeEEeecC---CCCCCCceeeecCCCcHHHHHHHHHHHHhc-----CCeEEEEee
Confidence 5999999997553211111 1111112111 122222344555566677777777776654 688999999
Q ss_pred chhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecC-----CCCHhH
Q 007365 410 TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL-----PNDIDD 484 (606)
Q Consensus 410 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~-----p~s~~~ 484 (606)
|+++++.|.++|.+.|+++..+|++...-+|.+++++.+.|.++|||..+.+-+|||+|.|.+|.++|. ..|-.+
T Consensus 455 TKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~S 534 (663)
T COG0556 455 TKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 534 (663)
T ss_pred hHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 468999
Q ss_pred HHHHhhccccCCCcceEEEEeccC
Q 007365 485 YVHRIGRTGRAGKSGLATAFFNEN 508 (606)
Q Consensus 485 y~QRiGR~gR~g~~G~~~~~~~~~ 508 (606)
.+|-||||+|. -.|.++++.+.-
T Consensus 535 LIQtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 535 LIQTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHHHHhhc-cCCeEEEEchhh
Confidence 99999999996 579888887653
No 116
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=1.8e-20 Score=209.46 Aligned_cols=149 Identities=23% Similarity=0.337 Sum_probs=126.7
Q ss_pred chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc
Q 007365 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT 458 (606)
Q Consensus 379 ~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 458 (606)
..+...+++.|...... ..++||||++++.++.|++.|...++++..+|+++++.+|..+++.|+.|++.|||||
T Consensus 429 ~~q~~~L~~~L~~~~~~-----g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t 503 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAK-----GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI 503 (652)
T ss_pred cccHHHHHHHHHHHHhC-----CCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe
Confidence 44566677777665533 6789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEecC-----CCCHhHHHHHhhccccCCCcceEEEEeccC---------ChhhHHHHHHHHHHhc
Q 007365 459 DVAARGLDIPHVAHVVNFDL-----PNDIDDYVHRIGRTGRAGKSGLATAFFNEN---------NLSLARPLAELMQESN 524 (606)
Q Consensus 459 ~v~~~GlDip~v~~VI~~d~-----p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~---------~~~~~~~l~~~l~~~~ 524 (606)
+++++|+|+|++++||++|. |.+...|+||+|||||. ..|.|++|++.. +....+++...+....
T Consensus 504 ~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 582 (652)
T PRK05298 504 NLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEH 582 (652)
T ss_pred CHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999885 78999999999999996 789999999853 4445555555666666
Q ss_pred CcccHHHHH
Q 007365 525 QEVPAWLTR 533 (606)
Q Consensus 525 q~vp~~L~~ 533 (606)
..+|....+
T Consensus 583 ~~~~~~~~~ 591 (652)
T PRK05298 583 GITPKTIKK 591 (652)
T ss_pred CCCChhHHH
Confidence 677766533
No 117
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=1.9e-20 Score=216.37 Aligned_cols=350 Identities=17% Similarity=0.221 Sum_probs=213.7
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhHHH----HHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEE
Q 007365 149 LGEELNLNIRRCKYVKPTPVQRHAIP----ISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLAL 224 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~~ai~----~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~L 224 (606)
+++.+.+.+...+|. ++|.|.+.+. .+..++++++.|+||+|||++|++|++...... .++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~-------------~~vv 296 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITE-------------KPVV 296 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCC-------------CeEE
Confidence 344667777777875 8999998666 455679999999999999999999998765411 1399
Q ss_pred EEccchHHHHHHHH-HHHHhhhcCC--cEEEEEECCCCh---------------HHH-----------------------
Q 007365 225 ILAPTRELSSQIHD-EAKKFSYQTG--VKVVVAYGGAPI---------------NQQ----------------------- 263 (606)
Q Consensus 225 il~Ptr~La~Qi~~-~~~~~~~~~~--~~~~~~~gg~~~---------------~~~----------------------- 263 (606)
|.+||++|..|+.. ++..+....+ ++++++.|..+. ..+
T Consensus 297 i~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el 376 (850)
T TIGR01407 297 ISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDEL 376 (850)
T ss_pred EEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhc
Confidence 99999999999865 5665554333 667666654321 000
Q ss_pred ---------H------------------------HHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCC
Q 007365 264 ---------L------------------------RELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG 310 (606)
Q Consensus 264 ---------~------------------------~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g 310 (606)
+ +.....++|||+.+.-|+..+......+....+||+||||++.+..
T Consensus 377 ~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a 456 (850)
T TIGR01407 377 NLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIA 456 (850)
T ss_pred cCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHH
Confidence 0 0111236899999999888765443335666899999999865420
Q ss_pred -------C-----HHH----------------------------------------------------------------
Q 007365 311 -------F-----EPQ---------------------------------------------------------------- 314 (606)
Q Consensus 311 -------f-----~~~---------------------------------------------------------------- 314 (606)
+ ...
T Consensus 457 ~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 536 (850)
T TIGR01407 457 ENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQ 536 (850)
T ss_pred HHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0 000
Q ss_pred HHHHHHh---------------------cCC------------C-----------CCCCceEEEEeccChH--HHHHHHH
Q 007365 315 IRKIVQQ---------------------MDM------------P-----------PPGVRQTMLFSATFPK--EIQKLAS 348 (606)
Q Consensus 315 i~~i~~~---------------------l~~------------~-----------~~~~~q~ll~SAT~~~--~i~~l~~ 348 (606)
+...+.. ... + -+....+|++|||+.. ....+.+
T Consensus 537 l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~ 616 (850)
T TIGR01407 537 LRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQ 616 (850)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHH
Confidence 0000000 000 0 0112467899999863 2222222
Q ss_pred Hh-hcCcEEEEeccccCccCceeEEEEEecc----------chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHH
Q 007365 349 DF-LANYVFLAVGRVGSSTDLIVQRVEYVHE----------SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADAL 417 (606)
Q Consensus 349 ~~-l~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l 417 (606)
.+ +.+..+..+. .+..+...+...++.. ..-...+.+.+...... ..+++|||+++.+.++.+
T Consensus 617 ~lGl~~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~----~~g~~LVlftS~~~l~~v 690 (850)
T TIGR01407 617 LLGLTDVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI----TSPKILVLFTSYEMLHMV 690 (850)
T ss_pred hcCCCccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh----cCCCEEEEeCCHHHHHHH
Confidence 22 1122222221 1222211222222211 11222444455444332 256799999999999999
Q ss_pred HHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCcc--EEEEecCCCC----------
Q 007365 418 EHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVA--HVVNFDLPND---------- 481 (606)
Q Consensus 418 ~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~--~VI~~d~p~s---------- 481 (606)
++.|.. .+++ .+..+.. .+|.+++++|+.++..||++|+.+.+|||+|+.. +||...+|..
T Consensus 691 ~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~ 767 (850)
T TIGR01407 691 YDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKY 767 (850)
T ss_pred HHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHH
Confidence 999975 2333 2333333 5789999999999999999999999999999865 5676666531
Q ss_pred --------------------HhHHHHHhhccccCCCcceEEEEeccC--ChhhHHHHHHHHH
Q 007365 482 --------------------IDDYVHRIGRTGRAGKSGLATAFFNEN--NLSLARPLAELMQ 521 (606)
Q Consensus 482 --------------------~~~y~QRiGR~gR~g~~G~~~~~~~~~--~~~~~~~l~~~l~ 521 (606)
+..+.|.+||.-|..++--++++++.. ...+-+.+.+.+.
T Consensus 768 ~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 768 WQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred HHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 123459999999987654455555543 3334455555544
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.87 E-value=1.5e-20 Score=210.81 Aligned_cols=303 Identities=17% Similarity=0.150 Sum_probs=180.0
Q ss_pred CCHHHHhHHHHHhc----------CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHH
Q 007365 165 PTPVQRHAIPISVA----------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSS 234 (606)
Q Consensus 165 p~~~Q~~ai~~i~~----------~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~ 234 (606)
++++|.+||..+.. .+..+++++||||||++++..+. .++.. ...+++|||+|+.+|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~----------~~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL----------LKNPKVFFVVDRRELDY 307 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh----------cCCCeEEEEECcHHHHH
Confidence 78899999986532 25789999999999997655543 33322 12357999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhc-CCcEEEecHHHHHHHHHhc--cccccc-eeEEEEecccccccCC
Q 007365 235 QIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERA--RVSLQM-IRYLALDEADRMLDMG 310 (606)
Q Consensus 235 Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~--~~~l~~-~~~lVlDEah~~~~~g 310 (606)
|+.+.+..+... .. ....+...-...+.. ...|+|+|.++|...+... ...... --+||+||||+.....
T Consensus 308 Q~~~~f~~~~~~----~~--~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~ 381 (667)
T TIGR00348 308 QLMKEFQSLQKD----CA--ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE 381 (667)
T ss_pred HHHHHHHhhCCC----CC--cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH
Confidence 999999997531 00 111222222233332 3689999999998654331 111111 1289999999965332
Q ss_pred CHHHHHHHH-HhcCCCCCCCceEEEEeccChHH----HHHHHHHhhcCcEEEEeccccCccCceeEEEEEec-------c
Q 007365 311 FEPQIRKIV-QQMDMPPPGVRQTMLFSATFPKE----IQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVH-------E 378 (606)
Q Consensus 311 f~~~i~~i~-~~l~~~~~~~~q~ll~SAT~~~~----i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~-------~ 378 (606)
+...+ ..+ +....++||||+-.. ..........++++ ...-..+..+...-.+.+.. .
T Consensus 382 ----~~~~l~~~~-----p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~-~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~ 451 (667)
T TIGR00348 382 ----LAKNLKKAL-----KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH-RYFITDAIRDGLTVKIDYEDRLPEDHLD 451 (667)
T ss_pred ----HHHHHHhhC-----CCCcEEEEeCCCcccccccccccccCCCCCeEE-EeeHHHHhhcCCeeeEEEEecchhhccC
Confidence 33333 333 235699999997432 11111110112221 11111111111111111000 0
Q ss_pred chh----------------------------------------hhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHH
Q 007365 379 SDK----------------------------------------RSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALE 418 (606)
Q Consensus 379 ~~k----------------------------------------~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~ 418 (606)
..+ ...+.+.+.+...........+++|||.++.+|..+.
T Consensus 452 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~ 531 (667)
T TIGR00348 452 RKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEK 531 (667)
T ss_pred hHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHH
Confidence 000 0111111111111111222578999999999999999
Q ss_pred HHHHhC-----CCCcEEeeCccCHH---------------------HHHHHHHhccC-CCCcEEEEccccccCCCCCCcc
Q 007365 419 HWLYMN-----GFPATTIHGDRTQQ---------------------ERELALRSFKS-GKTPILVATDVAARGLDIPHVA 471 (606)
Q Consensus 419 ~~L~~~-----~~~~~~lhg~~~~~---------------------~R~~~l~~F~~-g~~~iLVaT~v~~~GlDip~v~ 471 (606)
+.|... +..++.+++..+.. ....++++|+. +..+|||+++++.+|+|.|.++
T Consensus 532 ~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~ 611 (667)
T TIGR00348 532 NALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILN 611 (667)
T ss_pred HHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccc
Confidence 988654 23455666543222 23478899976 6789999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccccC
Q 007365 472 HVVNFDLPNDIDDYVHRIGRTGRA 495 (606)
Q Consensus 472 ~VI~~d~p~s~~~y~QRiGR~gR~ 495 (606)
+++..-+..+. .++|.+||+.|.
T Consensus 612 tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 612 TLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred eEEEecccccc-HHHHHHHHhccc
Confidence 98877776654 589999999994
No 119
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.2e-20 Score=200.91 Aligned_cols=318 Identities=19% Similarity=0.218 Sum_probs=213.4
Q ss_pred CCCHHHHhHHHHHhc----CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVA----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~----~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
++.+||++.+.++.+ +...|+-.++|.|||+..+. .|..+....... ..+|||||. .++.||..+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~k~~---------~paLIVCP~-Tii~qW~~E 273 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSGKLT---------KPALIVCPA-TIIHQWMKE 273 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhccccc---------CceEEEccH-HHHHHHHHH
Confidence 578999999988754 47789999999999986333 333333321111 129999996 577889999
Q ss_pred HHHhhhcCCcEEEEEECCCCh--------HHHHHH-H----hcCCcEEEecHHHHHHHHHhccccccceeEEEEeccccc
Q 007365 240 AKKFSYQTGVKVVVAYGGAPI--------NQQLRE-L----ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 306 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~--------~~~~~~-l----~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~ 306 (606)
+..|. ..+++.++++..+. ...... + ..+..|+|+|+..|.-. ...+.-..+.|+||||.|++
T Consensus 274 ~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~I 349 (923)
T KOG0387|consen 274 FQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRI 349 (923)
T ss_pred HHHhC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccc
Confidence 99985 34788888776552 111111 1 22457999999887542 23334456889999999998
Q ss_pred ccCCCHHHHHHHHHhcCCCCCCCceEEEEeccC-hHHHHHHHH-------------------------------------
Q 007365 307 LDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF-PKEIQKLAS------------------------------------- 348 (606)
Q Consensus 307 ~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~-~~~i~~l~~------------------------------------- 348 (606)
-+.. .++...+.++. ..+.|.+|.|+ .+.+.++..
T Consensus 350 rNpn--s~islackki~-----T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv 422 (923)
T KOG0387|consen 350 RNPN--SKISLACKKIR-----TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV 422 (923)
T ss_pred cCCc--cHHHHHHHhcc-----ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH
Confidence 7764 44444455542 23456666663 111111110
Q ss_pred ----------------------------------------------------HhhcCc-----------EEEEeccccCc
Q 007365 349 ----------------------------------------------------DFLANY-----------VFLAVGRVGSS 365 (606)
Q Consensus 349 ----------------------------------------------------~~l~~~-----------~~~~~~~~~~~ 365 (606)
.|+... .+..+......
T Consensus 423 ~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkI 502 (923)
T KOG0387|consen 423 QTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKI 502 (923)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhh
Confidence 000000 00000000000
Q ss_pred cC----------ceeEEE---EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHH-hCCCCcEEe
Q 007365 366 TD----------LIVQRV---EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLY-MNGFPATTI 431 (606)
Q Consensus 366 ~~----------~i~~~~---~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~-~~~~~~~~l 431 (606)
+. ...+.. ..+....|...+.++|...... ..++|+|..++.+.+.|..+|. ..++.++.+
T Consensus 503 CnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kq-----g~rvllFsqs~~mLdilE~fL~~~~~ysylRm 577 (923)
T KOG0387|consen 503 CNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQ-----GDRVLLFSQSRQMLDILESFLRRAKGYSYLRM 577 (923)
T ss_pred cCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhC-----CCEEEEehhHHHHHHHHHHHHHhcCCceEEEe
Confidence 00 000000 1122345667777777776644 6789999999999999999998 689999999
Q ss_pred eCccCHHHHHHHHHhccCCCCc--EEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceE--EEEecc
Q 007365 432 HGDRTQQERELALRSFKSGKTP--ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA--TAFFNE 507 (606)
Q Consensus 432 hg~~~~~~R~~~l~~F~~g~~~--iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~--~~~~~~ 507 (606)
.|..+...|..++++|.++... +|++|.|..-|+++..++-||.||+.||+..-.|..-|+-|.|++-.+ |.|++.
T Consensus 578 DGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 578 DGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred cCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 9999999999999999987544 788999999999999999999999999999999999999999997544 445554
Q ss_pred C
Q 007365 508 N 508 (606)
Q Consensus 508 ~ 508 (606)
.
T Consensus 658 g 658 (923)
T KOG0387|consen 658 G 658 (923)
T ss_pred C
Confidence 3
No 120
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.4e-19 Score=195.76 Aligned_cols=320 Identities=18% Similarity=0.174 Sum_probs=222.0
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|--..-.+++| -|+.+.||+|||+++.+|++...+..+ .+.|++|+..||.|-++++..+
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~-------------~VhvvT~NdyLA~RDae~m~~l 142 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGR-------------RVHVITVNDYLARRDAEWMGPL 142 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCC-------------CeEEEcCCHHHHHHHHHHHHHH
Confidence 6888898888777766 478999999999999999987776543 3999999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhc------cccccceeEEEEecccccc-cCC-----
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG----- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~g----- 310 (606)
...+++++.++.+..+..+. .-...|||+++|..-| .+.|... ......+.+.|+||+|.+| |..
T Consensus 143 y~~LGLsvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 143 YEALGLTVGWITEESTPEER--RAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred HHhcCCEEEEECCCCCHHHH--HHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 99999999998887664433 2333599999998776 2333221 1234568899999999765 210
Q ss_pred ---------CHHHHHHHHHhcCCC--------------------------------------------------------
Q 007365 311 ---------FEPQIRKIVQQMDMP-------------------------------------------------------- 325 (606)
Q Consensus 311 ---------f~~~i~~i~~~l~~~-------------------------------------------------------- 325 (606)
....+..++..+...
T Consensus 221 ISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 221 LAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred eeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 111112222222100
Q ss_pred ------------------------------------------CCCC----------------ceEEEEeccChHHHHHHH
Q 007365 326 ------------------------------------------PPGV----------------RQTMLFSATFPKEIQKLA 347 (606)
Q Consensus 326 ------------------------------------------~~~~----------------~q~ll~SAT~~~~i~~l~ 347 (606)
..+. ..+.+||.|...+..++.
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~ 380 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR 380 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH
Confidence 0000 123456666555544444
Q ss_pred HHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCC
Q 007365 348 SDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFP 427 (606)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~ 427 (606)
+.|--+.+ .+....+....-.....+.....|...+++.+.+... +..++||.|.+.+..+.|+..|...+++
T Consensus 381 ~iY~l~Vv--~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~-----~GrPVLVgt~sI~~SE~ls~~L~~~gI~ 453 (764)
T PRK12326 381 QFYDLGVS--VIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHE-----TGQPVLVGTHDVAESEELAERLRAAGVP 453 (764)
T ss_pred HHhCCcEE--ECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 44433322 2211111111111224555667788888877777654 3889999999999999999999999999
Q ss_pred cEEeeCccCHHHHHHHHHhccCCC-CcEEEEccccccCCCCCC----------c-----cEEEEecCCCCHhHHHHHhhc
Q 007365 428 ATTIHGDRTQQERELALRSFKSGK-TPILVATDVAARGLDIPH----------V-----AHVVNFDLPNDIDDYVHRIGR 491 (606)
Q Consensus 428 ~~~lhg~~~~~~R~~~l~~F~~g~-~~iLVaT~v~~~GlDip~----------v-----~~VI~~d~p~s~~~y~QRiGR 491 (606)
...|++.-...|- +++. ..|+ -.|.|||++|.||.||.- | =|||-...+.|..--.|-.||
T Consensus 454 h~vLNAk~~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGR 530 (764)
T PRK12326 454 AVVLNAKNDAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGR 530 (764)
T ss_pred ceeeccCchHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcc
Confidence 9999986443332 2232 2233 349999999999999962 2 289999999999999999999
Q ss_pred cccCCCcceEEEEeccCCh
Q 007365 492 TGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 492 ~gR~g~~G~~~~~~~~~~~ 510 (606)
+||.|.+|.+..|++-+|.
T Consensus 531 aGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 531 AGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred cccCCCCCceeEEEEcchh
Confidence 9999999999999987654
No 121
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.5e-20 Score=189.80 Aligned_cols=331 Identities=15% Similarity=0.146 Sum_probs=220.0
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007365 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
++.|...+.++...+.+++..-...+.++.+-+..+..++-+++.++||||||+..-...+...+...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~------------ 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL------------ 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc------------
Confidence 66788899999988888877766677778888888899999999999999999854444444333322
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007365 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
-.+.+..|.|.-|.+++..+..- .++....-+|..-.-+... ....-+-+||.+.|+....... .+..+.+|||
T Consensus 92 ~~v~CTQprrvaamsva~RVadE---MDv~lG~EVGysIrfEdC~--~~~T~Lky~tDgmLlrEams~p-~l~~y~viiL 165 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVADE---MDVTLGEEVGYSIRFEDCT--SPNTLLKYCTDGMLLREAMSDP-LLGRYGVIIL 165 (699)
T ss_pred cceeecCchHHHHHHHHHHHHHH---hccccchhccccccccccC--ChhHHHHHhcchHHHHHHhhCc-ccccccEEEe
Confidence 12899999999999988766542 2333222222111110000 0001234677777777666555 3889999999
Q ss_pred ecccc-cccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccc
Q 007365 301 DEADR-MLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHES 379 (606)
Q Consensus 301 DEah~-~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 379 (606)
||||. -+. .+.+.-+++..... .++.++|.||||+... ....|+.+.-.+.+.. ...+...|.--.+.
T Consensus 166 DeahERtlA---TDiLmGllk~v~~~-rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~er 234 (699)
T KOG0925|consen 166 DEAHERTLA---TDILMGLLKEVVRN-RPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEIFYTPEPER 234 (699)
T ss_pred chhhhhhHH---HHHHHHHHHHHHhh-CCCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEEEecCCCCh
Confidence 99995 221 12223333333222 3588999999997652 3444555554444432 12222223333345
Q ss_pred hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC---------CCCcEEeeCccCHHHHHHHHHhccC-
Q 007365 380 DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN---------GFPATTIHGDRTQQERELALRSFKS- 449 (606)
Q Consensus 380 ~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~- 449 (606)
+.++..+..+.++...+. .+-+|||....++++..++.+... -+.++++| +.++..+++--..
T Consensus 235 DylEaairtV~qih~~ee---~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~ 307 (699)
T KOG0925|consen 235 DYLEAAIRTVLQIHMCEE---PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEK 307 (699)
T ss_pred hHHHHHHHHHHHHHhccC---CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcc
Confidence 556666666655554433 556999999999999999888643 35677888 4445555544332
Q ss_pred --C--CCcEEEEccccccCCCCCCccEEEEecC------------------CCCHhHHHHHhhccccCCCcceEEEEecc
Q 007365 450 --G--KTPILVATDVAARGLDIPHVAHVVNFDL------------------PNDIDDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 450 --g--~~~iLVaT~v~~~GlDip~v~~VI~~d~------------------p~s~~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
| ..+|+|+|++++..+.|+.|.+||.-.+ |-|..+-.||.||+||. .+|+|+.+|++
T Consensus 308 ~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 308 RNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred cCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 2 3579999999999999999999996443 66888999999999998 89999999986
Q ss_pred C
Q 007365 508 N 508 (606)
Q Consensus 508 ~ 508 (606)
.
T Consensus 387 ~ 387 (699)
T KOG0925|consen 387 E 387 (699)
T ss_pred H
Confidence 4
No 122
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=3.9e-21 Score=194.48 Aligned_cols=294 Identities=18% Similarity=0.186 Sum_probs=203.3
Q ss_pred CCCCHHHHhHHHHHhcC---CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAG---RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~---~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
..++|||+.++..+..+ |..||+.|+|+|||++-+.++. .+ ...+||||.+...++||...
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti---------------kK~clvLcts~VSVeQWkqQ 364 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI---------------KKSCLVLCTSAVSVEQWKQQ 364 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee---------------cccEEEEecCccCHHHHHHH
Confidence 46899999999988776 7889999999999997655432 11 12399999999999999999
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc--------cccccceeEEEEecccccccCCC
Q 007365 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--------RVSLQMIRYLALDEADRMLDMGF 311 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~--------~~~l~~~~~lVlDEah~~~~~gf 311 (606)
++.|+....-.++.++..... ....++.|+|+|+..+..--.+. .+.-..+.++||||+|.+-.+-|
T Consensus 365 fk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 365 FKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred HHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH
Confidence 999975555556665554421 23456899999997664321110 01235688999999998877767
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHH-HhhcCcEEEEeccccC--------------------------
Q 007365 312 EPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS-DFLANYVFLAVGRVGS-------------------------- 364 (606)
Q Consensus 312 ~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~-~~l~~~~~~~~~~~~~-------------------------- 364 (606)
+..+.-+-.++ .++++||+-.+-.++.. +||..|..+...-.+.
T Consensus 440 RRVlsiv~aHc---------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eY 510 (776)
T KOG1123|consen 440 RRVLSIVQAHC---------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREY 510 (776)
T ss_pred HHHHHHHHHHh---------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHH
Confidence 77777666666 58999997554332221 1222221111100000
Q ss_pred -ccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHH
Q 007365 365 -STDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELA 443 (606)
Q Consensus 365 -~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 443 (606)
....-.....++....|+....-+++.... .+.++|||..+.-....++-.|.+. .|+|..+|.+|.+|
T Consensus 511 L~~~t~kr~lLyvMNP~KFraCqfLI~~HE~-----RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 511 LRENTRKRMLLYVMNPNKFRACQFLIKFHER-----RGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKI 580 (776)
T ss_pred HhhhhhhhheeeecCcchhHHHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHH
Confidence 001111222334445555544444433322 3789999999887777777666443 68999999999999
Q ss_pred HHhccCC-CCcEEEEccccccCCCCCCccEEEEecCC-CCHhHHHHHhhccccCC
Q 007365 444 LRSFKSG-KTPILVATDVAARGLDIPHVAHVVNFDLP-NDIDDYVHRIGRTGRAG 496 (606)
Q Consensus 444 l~~F~~g-~~~iLVaT~v~~~GlDip~v~~VI~~d~p-~s~~~y~QRiGR~gR~g 496 (606)
|+.|+-. +++.++...|....||+|.++++|+...- .|-.+-.||.||..|+-
T Consensus 581 LqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 581 LQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred HHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 9999855 67889999999999999999999988764 36788899999999974
No 123
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.85 E-value=1.3e-20 Score=208.43 Aligned_cols=319 Identities=21% Similarity=0.285 Sum_probs=215.3
Q ss_pred CCCCHHHHhHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISV----AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~----~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
..++.||-+.+++++ .+.++|+..++|.|||+. .+..|..+...... .+| .|||+|...+ ..|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~--------~gp-flvvvplst~-~~W~~ 437 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQI--------HGP-FLVVVPLSTI-TAWER 437 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhc--------cCC-eEEEeehhhh-HHHHH
Confidence 368999999998754 468999999999999985 33334444433211 123 7888897665 44788
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHHHh----c-----CCcEEEecHHHHHHHHHhccccccceeEEEEecccccccC
Q 007365 239 EAKKFSYQTGVKVVVAYGGAPINQQLRELE----R-----GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 309 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~-----~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~ 309 (606)
++..++ .+++++++|.....+.++..+ . ..++|++|++.++.-- ..+.--.+.++++||||++.+.
T Consensus 438 ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~ 512 (1373)
T KOG0384|consen 438 EFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKND 512 (1373)
T ss_pred HHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCch
Confidence 888775 688888888776665555542 1 3789999999886532 1222334678999999999864
Q ss_pred CCHHHHHHHHHhcCCCCCCCceEEEEeccC-hHHHHHHHHH--hhcCc--------------------------------
Q 007365 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATF-PKEIQKLASD--FLANY-------------------------------- 354 (606)
Q Consensus 310 gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~-~~~i~~l~~~--~l~~~-------------------------------- 354 (606)
...+...+..+.+. ..|+++.|+ .+.+.+|... |+..-
T Consensus 513 --~~~l~~~l~~f~~~-----~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~l 585 (1373)
T KOG0384|consen 513 --ESKLYESLNQFKMN-----HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLL 585 (1373)
T ss_pred --HHHHHHHHHHhccc-----ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHH
Confidence 34555556665332 357778884 2233333211 11100
Q ss_pred ----------------EEEEe-----------------------ccccCccC----------ceeEEEEEe---------
Q 007365 355 ----------------VFLAV-----------------------GRVGSSTD----------LIVQRVEYV--------- 376 (606)
Q Consensus 355 ----------------~~~~~-----------------------~~~~~~~~----------~i~~~~~~~--------- 376 (606)
..+.| +..+.... ...+.|.+-
T Consensus 586 Rr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~ 665 (1373)
T KOG0384|consen 586 RRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGD 665 (1373)
T ss_pred HHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHh
Confidence 00000 00000000 000000000
Q ss_pred --------------ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHH
Q 007365 377 --------------HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 442 (606)
Q Consensus 377 --------------~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 442 (606)
..+.|+..|-.||.... ....+||||.+.++..+.|+++|...+|+.-.|.|.+....|..
T Consensus 666 ~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk-----~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~ 740 (1373)
T KOG0384|consen 666 FRDKMRDEALQALIQSSGKLVLLDKLLPRLK-----EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQ 740 (1373)
T ss_pred hhhcchHHHHHHHHHhcCcEEeHHHHHHHHh-----cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHH
Confidence 01112222222232222 23688999999999999999999999999999999999999999
Q ss_pred HHHhccC---CCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcce--EEEEeccCC
Q 007365 443 ALRSFKS---GKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL--ATAFFNENN 509 (606)
Q Consensus 443 ~l~~F~~---g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~--~~~~~~~~~ 509 (606)
+|+.|.. ....+|+||.+..-|||+..+++||+||..||+..-+|..-||.|.|++-. +|.|++.+-
T Consensus 741 AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 741 AIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred HHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999985 456699999999999999999999999999999999999999999999764 577887653
No 124
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=9.9e-20 Score=173.97 Aligned_cols=186 Identities=44% Similarity=0.654 Sum_probs=152.6
Q ss_pred CCCCCCCHHHHhHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007365 160 CKYVKPTPVQRHAIPISVAG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 160 ~~~~~p~~~Q~~ai~~i~~~-~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
.++.+|+++|.++++.++.. +.++++++||+|||.+++.+++..+.... ...+||++|++.++.|+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----------GKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----------CCcEEEEeCCHHHHHHHHH
Confidence 45678999999999999998 99999999999999998888887765432 1249999999999999999
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHHHhcCC-cEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHH
Q 007365 239 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 317 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~ 317 (606)
.+.++............++......+..+.... +|+++|++.|.+.+.........+++||+||+|.+....+...+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 73 ELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred HHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 999886554434555566666556666666666 9999999999999988776778899999999999887567888888
Q ss_pred HHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEec
Q 007365 318 IVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVG 360 (606)
Q Consensus 318 i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~ 360 (606)
++..+ +...+++++|||++.........++.+.+.+...
T Consensus 153 ~~~~~----~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 153 LLKLL----PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HHHhC----CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 88877 5667899999999999999998888876665544
No 125
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=194.72 Aligned_cols=157 Identities=21% Similarity=0.234 Sum_probs=115.8
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|..+|.+.+..+-.+..++|+|||-+|||.+ ..-++...++.... -.+|+++||..|++|+...+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD~----------~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESDS----------DVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcCC----------CEEEEecchHHHhhhhhHHHHHh
Confidence 58889999999999999999999999999995 44445555554322 24999999999999998877654
Q ss_pred h-hcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh---ccccccceeEEEEecccccccCCCHHHHHHHH
Q 007365 244 S-YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER---ARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319 (606)
Q Consensus 244 ~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~---~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~ 319 (606)
. ..+-.+.+.+.|......++. .-.|+|+|+-|+.|..+|.. .......+++||+||+|.+..+.-...++.++
T Consensus 580 F~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 580 FDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred hccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 3 222233334444444343333 22499999999999998876 33467889999999999998776555566666
Q ss_pred HhcCCCCCCCceEEEEeccC
Q 007365 320 QQMDMPPPGVRQTMLFSATF 339 (606)
Q Consensus 320 ~~l~~~~~~~~q~ll~SAT~ 339 (606)
..+ .+.+|.+|||+
T Consensus 658 ~li------~CP~L~LSATi 671 (1330)
T KOG0949|consen 658 LLI------PCPFLVLSATI 671 (1330)
T ss_pred Hhc------CCCeeEEeccc
Confidence 555 34589999997
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.2e-18 Score=192.79 Aligned_cols=322 Identities=17% Similarity=0.213 Sum_probs=209.6
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|--. .+.-++.-|+.+.||+|||+++.+|++...+... .|.|++||..||.|-++++..+
T Consensus 82 ~~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~-------------~VhvvT~ndyLA~RD~e~m~~l 146 (913)
T PRK13103 82 RHFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGK-------------GVHVVTVNDYLARRDANWMRPL 146 (913)
T ss_pred CcchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHcCC-------------CEEEEeCCHHHHHHHHHHHHHH
Confidence 466666544 3333567789999999999999999987666543 3999999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhcc------ccccceeEEEEecccccc-cCC-----
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML-DMG----- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~~~-~~g----- 310 (606)
....++++.++.+..+..+....+ .|+|+++|..-| .|.|.... .....+.++|+||+|.+| |..
T Consensus 147 ~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLI 224 (913)
T PRK13103 147 YEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLI 224 (913)
T ss_pred hcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCcee
Confidence 999999999987776544433333 399999999886 34333221 123778999999999876 221
Q ss_pred ----------CHHHHHHHHHhcCCC---------------CCCCceEEEEeccChHHHHH--------------------
Q 007365 311 ----------FEPQIRKIVQQMDMP---------------PPGVRQTMLFSATFPKEIQK-------------------- 345 (606)
Q Consensus 311 ----------f~~~i~~i~~~l~~~---------------~~~~~q~ll~SAT~~~~i~~-------------------- 345 (606)
....+..++..+... -....+.+.++-.--..++.
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~ 304 (913)
T PRK13103 225 ISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNL 304 (913)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhh
Confidence 122333444433110 00011122222110000000
Q ss_pred ---------HHHHhh--c--CcEEE-----Eecccc-Cc-----------------------------------------
Q 007365 346 ---------LASDFL--A--NYVFL-----AVGRVG-SS----------------------------------------- 365 (606)
Q Consensus 346 ---------l~~~~l--~--~~~~~-----~~~~~~-~~----------------------------------------- 365 (606)
+...++ . +|++. .++... ..
T Consensus 305 ~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (913)
T PRK13103 305 GLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLY 384 (913)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhc
Confidence 111111 1 12110 010000 00
Q ss_pred -------------------------------cC---ceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcch
Q 007365 366 -------------------------------TD---LIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETK 411 (606)
Q Consensus 366 -------------------------------~~---~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~ 411 (606)
.+ .-.....+.....|...+++.+..... +..++||-+.|.
T Consensus 385 ~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~-----~GrPVLVGT~SV 459 (913)
T PRK13103 385 NKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMA-----LGRPVLVGTATI 459 (913)
T ss_pred chhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEeCCH
Confidence 00 001112334456677777777766543 388999999999
Q ss_pred hhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCC-CcEEEEccccccCCCCC----------------------
Q 007365 412 KGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK-TPILVATDVAARGLDIP---------------------- 468 (606)
Q Consensus 412 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~-~~iLVaT~v~~~GlDip---------------------- 468 (606)
+..+.|+.+|...+++...|+......|-+.+- ..|+ -.|.|||++|.||.||.
T Consensus 460 e~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~ 536 (913)
T PRK13103 460 ETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQ 536 (913)
T ss_pred HHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHH
Confidence 999999999999999998888764433333222 3443 35999999999999994
Q ss_pred ----------Cc-----cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007365 469 ----------HV-----AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 469 ----------~v-----~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
.| =|||--..+.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 537 ~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 537 IKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12 2799999999999999999999999999999999997664
No 127
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.83 E-value=5.9e-18 Score=185.08 Aligned_cols=321 Identities=16% Similarity=0.213 Sum_probs=206.3
Q ss_pred CCCHHHHhHHHHHhcC----------CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHH
Q 007365 164 KPTPVQRHAIPISVAG----------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELS 233 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~----------~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La 233 (606)
.++|+|++.+..+..+ ..+|+.-.+|+|||+. ++++++.+++..+...+ --.++|||||. .|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~-----~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP-----LINKPLVVAPS-SLV 310 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc-----cccccEEEccH-HHH
Confidence 4899999999876442 2467777899999996 55666666665433211 11248999995 688
Q ss_pred HHHHHHHHHhhhcCCcEEEEEECCCCh-H-HHHHHH-----hcCCcEEEecHHHHHHHHHhccccccceeEEEEeccccc
Q 007365 234 SQIHDEAKKFSYQTGVKVVVAYGGAPI-N-QQLREL-----ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 306 (606)
Q Consensus 234 ~Qi~~~~~~~~~~~~~~~~~~~gg~~~-~-~~~~~l-----~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~ 306 (606)
..|+.++.+|.....+....+++.... . .....+ ....-|++.+++.+.+.++. +.+..+++||+||.|++
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc
Confidence 999999999976556777777777663 1 111111 11246888899999766553 45778999999999998
Q ss_pred ccCCCHHHHHHHHHhcCCCCCCCceEEEEeccC-hHHHHHHH--------------------------------------
Q 007365 307 LDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF-PKEIQKLA-------------------------------------- 347 (606)
Q Consensus 307 ~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~-~~~i~~l~-------------------------------------- 347 (606)
-+.. ..+.+.+..+. .++.|++|.|+ .+++.++.
T Consensus 389 kN~~--s~~~kaL~~l~-----t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~ 461 (776)
T KOG0390|consen 389 KNSD--SLTLKALSSLK-----TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDR 461 (776)
T ss_pred cchh--hHHHHHHHhcC-----CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhh
Confidence 7653 55666666663 34578899994 22111111
Q ss_pred -------------HHhhcCcEEEEeccccCccCceeEEEEEeccc-----------------------------------
Q 007365 348 -------------SDFLANYVFLAVGRVGSSTDLIVQRVEYVHES----------------------------------- 379 (606)
Q Consensus 348 -------------~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------------------- 379 (606)
..|+..+.- .......+.....+.++...
T Consensus 462 ~~~~rl~eL~~~t~~fi~rrt~---~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cn 538 (776)
T KOG0390|consen 462 EREERLQELRELTNKFILRRTG---DILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCN 538 (776)
T ss_pred hhHHHHHHHHHHHHhheeeccc---chhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhc
Confidence 111110000 00000001111111222111
Q ss_pred ---------------------------------------hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHH
Q 007365 380 ---------------------------------------DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHW 420 (606)
Q Consensus 380 ---------------------------------------~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~ 420 (606)
.|+..|..++...... -..++.+..+-+...+.+...
T Consensus 539 hP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek----~~~~~v~Isny~~tldl~e~~ 614 (776)
T KOG0390|consen 539 HPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREK----LLVKSVLISNYTQTLDLFEQL 614 (776)
T ss_pred CHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhh----cceEEEEeccHHHHHHHHHHH
Confidence 1122222222111100 122233344556666666666
Q ss_pred HHhCCCCcEEeeCccCHHHHHHHHHhccCCCCc---EEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCC
Q 007365 421 LYMNGFPATTIHGDRTQQERELALRSFKSGKTP---ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 497 (606)
Q Consensus 421 L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~---iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~ 497 (606)
++..|+.++.+||.|+..+|+.+++.|.+-... +|.+|.+.+.||++-.++.||.||+.||++.-.|.+.|+-|.||
T Consensus 615 ~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQ 694 (776)
T KOG0390|consen 615 CRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQ 694 (776)
T ss_pred HhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCC
Confidence 777799999999999999999999999865433 67788999999999999999999999999999999999999999
Q ss_pred cceEE--EEecc
Q 007365 498 SGLAT--AFFNE 507 (606)
Q Consensus 498 ~G~~~--~~~~~ 507 (606)
+-.|+ .|++.
T Consensus 695 Kk~v~iYrLlat 706 (776)
T KOG0390|consen 695 KKPVYIYRLLAT 706 (776)
T ss_pred cceEEEEEeecC
Confidence 87664 44543
No 128
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=2.4e-18 Score=189.28 Aligned_cols=317 Identities=21% Similarity=0.248 Sum_probs=211.6
Q ss_pred CCCHHHHhHHHHHhcC----CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVAG----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~----~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
.+++-|+.++..+... ...++.+.||||||.+|+-.|-..+.+.+ .+|||+|-..|-.|+.+.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-------------qvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-------------QVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-------------EEEEEeccccchHHHHHH
Confidence 5788999999988765 77899999999999998877666555442 499999999999999998
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHH---Hh-cCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccC---C--
Q 007365 240 AKKFSYQTGVKVVVAYGGAPINQQLRE---LE-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM---G-- 310 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~---g-- 310 (606)
++... +.++.+++.+.+..+.... .. ....|+|+|-..|+- .++++.+||+||=|.-.-. +
T Consensus 265 f~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~-------Pf~~LGLIIvDEEHD~sYKq~~~pr 334 (730)
T COG1198 265 FKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEDGPR 334 (730)
T ss_pred HHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC-------chhhccEEEEeccccccccCCcCCC
Confidence 88753 5788888888775544333 33 358999999444332 5889999999999964311 1
Q ss_pred -CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCcc-CceeEEEEEeccchhh-----h
Q 007365 311 -FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSST-DLIVQRVEYVHESDKR-----S 383 (606)
Q Consensus 311 -f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~k~-----~ 383 (606)
...++.....+. ....+||-|||+.-+....+. -..+..+.+....... ..-.+.+.+-.+..+. .
T Consensus 335 YhARdvA~~Ra~~-----~~~pvvLgSATPSLES~~~~~--~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 335 YHARDVAVLRAKK-----ENAPVVLGSATPSLESYANAE--SGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred cCHHHHHHHHHHH-----hCCCEEEecCCCCHHHHHhhh--cCceEEEEccccccccCCCcceEEeccccccccCccCCH
Confidence 223343333333 456799999997766544442 2234443333222211 1111222222222222 5
Q ss_pred HHHHHHHHHHhcccCCCCceEEEEEcchhhHH------------------------------------------------
Q 007365 384 HLMDLLHAQVANGVHGKQSLTLVFVETKKGAD------------------------------------------------ 415 (606)
Q Consensus 384 ~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~------------------------------------------------ 415 (606)
.|++.+.+.+.. ..++|+|+|.+-.+-
T Consensus 408 ~Ll~~i~~~l~~-----geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 408 ALLEAIRKTLER-----GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred HHHHHHHHHHhc-----CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCC
Confidence 677777766654 566888877654332
Q ss_pred ------------HHHHHHHhC--CCCcEEeeCccCH--HHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCC
Q 007365 416 ------------ALEHWLYMN--GFPATTIHGDRTQ--QERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP 479 (606)
Q Consensus 416 ------------~l~~~L~~~--~~~~~~lhg~~~~--~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p 479 (606)
.+++.|... +.+++.+.+|.+. ..-+..++.|..|+.+|||.|.+++.|.|+|+++.|...|..
T Consensus 483 s~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD 562 (730)
T COG1198 483 SEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDAD 562 (730)
T ss_pred CCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEech
Confidence 222223222 4566667666544 335678999999999999999999999999999997765543
Q ss_pred C------------CHhHHHHHhhccccCCCcceEEEEeccCChhhHHH
Q 007365 480 N------------DIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARP 515 (606)
Q Consensus 480 ~------------s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~ 515 (606)
. ....+.|-.||+||.+.+|.+++-....+...+..
T Consensus 563 ~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~ 610 (730)
T COG1198 563 TGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQA 610 (730)
T ss_pred hhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHH
Confidence 2 23456799999999999998877765555444333
No 129
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.81 E-value=4.3e-18 Score=181.28 Aligned_cols=319 Identities=19% Similarity=0.247 Sum_probs=216.3
Q ss_pred CCHHHHhHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHH
Q 007365 165 PTPVQRHAIPISV----AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 240 (606)
Q Consensus 165 p~~~Q~~ai~~i~----~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~ 240 (606)
+-+||.-.|+++. .+-+.|+..++|-|||.. +++.++.+.+.... +| -|||||...| ..|..++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~---------gp-HLVVvPsSTl-eNWlrEf 467 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNP---------GP-HLVVVPSSTL-ENWLREF 467 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCC---------CC-cEEEecchhH-HHHHHHH
Confidence 7789999998753 245679999999999986 44555555554321 22 6899998887 5589999
Q ss_pred HHhhhcCCcEEEEEECCCChHHHHHHHhc----CCcEEEecHHHHHHHHHhc-cccccceeEEEEecccccccCCCHHHH
Q 007365 241 KKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQI 315 (606)
Q Consensus 241 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~Tp~~L~~~l~~~-~~~l~~~~~lVlDEah~~~~~gf~~~i 315 (606)
.+||. .++|...||......+++.... .++|||+|+.....--... -+.-.++.++|+||+|.+.++. ...+
T Consensus 468 ~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy 544 (941)
T KOG0389|consen 468 AKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERY 544 (941)
T ss_pred HHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHH
Confidence 99984 4788888888877776665432 5899999987664221111 1233567899999999887765 3334
Q ss_pred HHHHHhcCCCCCCCceEEEEeccCh-HHHHHHH---HHhhcC--------------------------------------
Q 007365 316 RKIVQQMDMPPPGVRQTMLFSATFP-KEIQKLA---SDFLAN-------------------------------------- 353 (606)
Q Consensus 316 ~~i~~~l~~~~~~~~q~ll~SAT~~-~~i~~l~---~~~l~~-------------------------------------- 353 (606)
..++.- +..+.||++.|+- +++.++. ...|.+
T Consensus 545 ~~LM~I------~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~ 618 (941)
T KOG0389|consen 545 KHLMSI------NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKT 618 (941)
T ss_pred HHhccc------cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHH
Confidence 444321 2456788999941 1111111 100000
Q ss_pred ----cEEEEec-cccCccCceeEEEEEe----------------------------------------------------
Q 007365 354 ----YVFLAVG-RVGSSTDLIVQRVEYV---------------------------------------------------- 376 (606)
Q Consensus 354 ----~~~~~~~-~~~~~~~~i~~~~~~~---------------------------------------------------- 376 (606)
++..... .+-...+.-.+.+++|
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~ 698 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSI 698 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHh
Confidence 0000000 0000000000001111
Q ss_pred -----------------------------------------------------------ccchhhhHHHHHHHHHHhccc
Q 007365 377 -----------------------------------------------------------HESDKRSHLMDLLHAQVANGV 397 (606)
Q Consensus 377 -----------------------------------------------------------~~~~k~~~l~~ll~~~~~~~~ 397 (606)
-.+.|...|..+|.....
T Consensus 699 Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~--- 775 (941)
T KOG0389|consen 699 YTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKK--- 775 (941)
T ss_pred ccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhh---
Confidence 023344555555554443
Q ss_pred CCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCC--CcEEEEccccccCCCCCCccEEEE
Q 007365 398 HGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK--TPILVATDVAARGLDIPHVAHVVN 475 (606)
Q Consensus 398 ~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~iLVaT~v~~~GlDip~v~~VI~ 475 (606)
+..++|||..-....+.|...|...++....+.|...-.+|+.+++.|...+ .-+|++|.+..-||++..+++||.
T Consensus 776 --~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 776 --KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred --cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 3688999999999999999999999999999999999999999999998764 237999999999999999999999
Q ss_pred ecCCCCHhHHHHHhhccccCCCcc--eEEEEeccCC
Q 007365 476 FDLPNDIDDYVHRIGRTGRAGKSG--LATAFFNENN 509 (606)
Q Consensus 476 ~d~p~s~~~y~QRiGR~gR~g~~G--~~~~~~~~~~ 509 (606)
+|...|+-+-.|.-.||.|.|++- .++.|+++.-
T Consensus 854 hD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 854 HDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred eecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999999999999999965 4566676654
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=3.7e-17 Score=179.30 Aligned_cols=320 Identities=19% Similarity=0.190 Sum_probs=217.5
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|--.--+++.| -|+.+.||-|||+++.+|++-..+..+ .|-|++...-||..=++++..+
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk-------------gVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGK-------------GVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCC-------------ceEEEecchhhhhhhHHHHHHH
Confidence 5777887766555554 589999999999999999876655443 2788888899999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhcc------ccccceeEEEEecccccc-cCC-----
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML-DMG----- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~~~-~~g----- 310 (606)
...+|+.|.++..+.+... +.-...|||+++|..-| ++.|.... .....+.|.|+||+|.+| |..
T Consensus 143 y~fLGLsvG~i~~~~~~~~--rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNL--KREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHHhCCceeeeCCCCChHH--HHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 9999999998877655333 23344699999999876 34443321 124567899999999765 221
Q ss_pred ----------CHHHHHHHHHhcCCC-------------------------------------------------------
Q 007365 311 ----------FEPQIRKIVQQMDMP------------------------------------------------------- 325 (606)
Q Consensus 311 ----------f~~~i~~i~~~l~~~------------------------------------------------------- 325 (606)
+...+..++..+...
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 111112222222100
Q ss_pred -----------------------------------------CCCC----------------ceEEEEeccChHHHHHHHH
Q 007365 326 -----------------------------------------PPGV----------------RQTMLFSATFPKEIQKLAS 348 (606)
Q Consensus 326 -----------------------------------------~~~~----------------~q~ll~SAT~~~~i~~l~~ 348 (606)
..+. .++.+||.|...+-.++.+
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 0000 0223455554444334443
Q ss_pred HhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCc
Q 007365 349 DFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPA 428 (606)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~ 428 (606)
.|-.+.+ .+....+....-.....+.....|...+++.+..... +..++||.|.+.+..+.|+.+|...+++.
T Consensus 381 iY~l~Vv--~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~-----~gqPVLVgT~SIe~SE~ls~~L~~~gi~h 453 (925)
T PRK12903 381 IYNMRVN--VVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK-----KGQPILIGTAQVEDSETLHELLLEANIPH 453 (925)
T ss_pred HhCCCEE--ECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 3322222 2211111111111123455667888888877776653 38899999999999999999999999999
Q ss_pred EEeeCccCHHHHHHHHHhccCCC-CcEEEEccccccCCCCCCcc--------EEEEecCCCCHhHHHHHhhccccCCCcc
Q 007365 429 TTIHGDRTQQERELALRSFKSGK-TPILVATDVAARGLDIPHVA--------HVVNFDLPNDIDDYVHRIGRTGRAGKSG 499 (606)
Q Consensus 429 ~~lhg~~~~~~R~~~l~~F~~g~-~~iLVaT~v~~~GlDip~v~--------~VI~~d~p~s~~~y~QRiGR~gR~g~~G 499 (606)
..|++.. .+++..+-. ..|+ -.|.|||++|.||.||.--. |||....+.|..---|..||+||.|.+|
T Consensus 454 ~vLNAk~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 454 TVLNAKQ--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred eeecccc--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 9999863 344444333 4453 45999999999999996432 9999999999999999999999999999
Q ss_pred eEEEEeccCCh
Q 007365 500 LATAFFNENNL 510 (606)
Q Consensus 500 ~~~~~~~~~~~ 510 (606)
.+..|++-+|.
T Consensus 531 ss~f~lSLeD~ 541 (925)
T PRK12903 531 ESRFFISLDDQ 541 (925)
T ss_pred cceEEEecchH
Confidence 99999987664
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.80 E-value=2.1e-18 Score=190.45 Aligned_cols=327 Identities=20% Similarity=0.252 Sum_probs=214.5
Q ss_pred CCHHHHhHHHHHh--c--CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHH
Q 007365 165 PTPVQRHAIPISV--A--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 240 (606)
Q Consensus 165 p~~~Q~~ai~~i~--~--~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~ 240 (606)
++.||++.|.++. . +-+.|+|..+|-|||+..+-.+.....+.+.. .......-.|||||. .|+--|..++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~----~~e~~~~PSLIVCPs-TLtGHW~~E~ 1050 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSE----SSEFNRLPSLIVCPS-TLTGHWKSEV 1050 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhccc----chhhccCCeEEECCc-hhhhHHHHHH
Confidence 6889999998753 2 36789999999999997554444444333111 111112228999995 6999999999
Q ss_pred HHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHH
Q 007365 241 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 320 (606)
Q Consensus 241 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~ 320 (606)
.+|+.. +++....|....+...+.--+..+|+|+.|+.+.+-+.. +.-.++.|+||||-|-|.+. ...+.+.++
T Consensus 1051 ~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavk 1124 (1549)
T KOG0392|consen 1051 KKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVK 1124 (1549)
T ss_pred HHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHH
Confidence 999876 677777777666655665555679999999998754332 12345679999999987764 355666666
Q ss_pred hcCCCCCCCceEEEEeccCh-HHH--------------------------------------------------------
Q 007365 321 QMDMPPPGVRQTMLFSATFP-KEI-------------------------------------------------------- 343 (606)
Q Consensus 321 ~l~~~~~~~~q~ll~SAT~~-~~i-------------------------------------------------------- 343 (606)
++. .. ..+.+|.|+- +.+
T Consensus 1125 qL~----a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqV 1199 (1549)
T KOG0392|consen 1125 QLR----AN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQV 1199 (1549)
T ss_pred HHh----hc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHH
Confidence 663 22 3577788831 110
Q ss_pred -----HHHHHHhhcC--------cEE----------------------EEeccccCccCc-----eeEE-----------
Q 007365 344 -----QKLASDFLAN--------YVF----------------------LAVGRVGSSTDL-----IVQR----------- 372 (606)
Q Consensus 344 -----~~l~~~~l~~--------~~~----------------------~~~~~~~~~~~~-----i~~~----------- 372 (606)
+++.++.|.+ |.+ ..+. ....... +.|.
T Consensus 1200 LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d-~~~~S~gt~~~HvFqaLqYlrKLcnHp 1278 (1549)
T KOG0392|consen 1200 LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQID-GGEESLGTDKTHVFQALQYLRKLCNHP 1278 (1549)
T ss_pred HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccc-cchhccCcchHHHHHHHHHHHHhcCCc
Confidence 1111111111 000 0000 0000000 0000
Q ss_pred -EEE-----------------------eccchhhhHHHHHHHHHHhcccC---------CCCceEEEEEcchhhHHHHHH
Q 007365 373 -VEY-----------------------VHESDKRSHLMDLLHAQVANGVH---------GKQSLTLVFVETKKGADALEH 419 (606)
Q Consensus 373 -~~~-----------------------~~~~~k~~~l~~ll~~~~~~~~~---------~~~~~~LVF~~s~~~~~~l~~ 419 (606)
+.. +....|...|.++|.+.-..... -.+.++||||+-|.+++.+.+
T Consensus 1279 aLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVek 1358 (1549)
T KOG0392|consen 1279 ALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEK 1358 (1549)
T ss_pred ceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHH
Confidence 000 01234555555555443211000 135789999999999999998
Q ss_pred HHHhCCCC---cEEeeCccCHHHHHHHHHhccCC-CCcEEE-EccccccCCCCCCccEEEEecCCCCHhHHHHHhhcccc
Q 007365 420 WLYMNGFP---ATTIHGDRTQQERELALRSFKSG-KTPILV-ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR 494 (606)
Q Consensus 420 ~L~~~~~~---~~~lhg~~~~~~R~~~l~~F~~g-~~~iLV-aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR 494 (606)
-|.+.-.+ ...+.|..++.+|.++.++|.++ .++||+ +|.|..-|+|+..+++||+++-.||+..-.|.+.||.|
T Consensus 1359 DL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHR 1438 (1549)
T KOG0392|consen 1359 DLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHR 1438 (1549)
T ss_pred HHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHh
Confidence 87655333 33789999999999999999998 677655 66999999999999999999999999999999999999
Q ss_pred CCCcceE--EEEeccC
Q 007365 495 AGKSGLA--TAFFNEN 508 (606)
Q Consensus 495 ~g~~G~~--~~~~~~~ 508 (606)
.|++-++ +.|++..
T Consensus 1439 IGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1439 IGQKRVVNVYRLITRG 1454 (1549)
T ss_pred hcCceeeeeeeehhcc
Confidence 9998754 5566554
No 132
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.80 E-value=4.3e-17 Score=186.16 Aligned_cols=329 Identities=19% Similarity=0.205 Sum_probs=199.1
Q ss_pred CCCHHHHhHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHH-HH
Q 007365 164 KPTPVQRHAIPI----SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI-HD 238 (606)
Q Consensus 164 ~p~~~Q~~ai~~----i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi-~~ 238 (606)
++++-|.+.... +..+..++++|+||+|||++|++|++.... .+++||++||++|++|+ .+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~--------------~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD--------------QRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC--------------CCcEEEEeCcHHHHHHHHHH
Confidence 689999995544 344688999999999999999999886431 13499999999999999 47
Q ss_pred HHHHhhhcCCcEEEEEECCCChH-----HH------------------------------------------HHHH----
Q 007365 239 EAKKFSYQTGVKVVVAYGGAPIN-----QQ------------------------------------------LREL---- 267 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~-----~~------------------------------------------~~~l---- 267 (606)
.+..+....++++.++.|+.+.- ++ +..+
T Consensus 311 ~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 311 EVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 77777766777777766654310 00 0000
Q ss_pred --------------------hcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCC-----C-------HHH-
Q 007365 268 --------------------ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-----F-------EPQ- 314 (606)
Q Consensus 268 --------------------~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g-----f-------~~~- 314 (606)
...++|||+...-|+..+.... .+...++|||||||++.+.. . ...
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l 469 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTI 469 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHH
Confidence 1136799999998887765443 36778999999999865321 0 000
Q ss_pred ------------------------------------------HHH-------H--------HHhcC---------CCC--
Q 007365 315 ------------------------------------------IRK-------I--------VQQMD---------MPP-- 326 (606)
Q Consensus 315 ------------------------------------------i~~-------i--------~~~l~---------~~~-- 326 (606)
+.. + ...+. ...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~ 549 (820)
T PRK07246 470 QKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQS 549 (820)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 000 0 00000 000
Q ss_pred ---------------------CCCceEEEEeccCh--HHHHHHHHHh-hcCcEEEEeccccCccCceeEEEEEe----cc
Q 007365 327 ---------------------PGVRQTMLFSATFP--KEIQKLASDF-LANYVFLAVGRVGSSTDLIVQRVEYV----HE 378 (606)
Q Consensus 327 ---------------------~~~~q~ll~SAT~~--~~i~~l~~~~-l~~~~~~~~~~~~~~~~~i~~~~~~~----~~ 378 (606)
+....+|++|||++ .... +...+ +.......+. ...-.+...++ +.
T Consensus 550 ~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~-----~~~~~~~~~~i~~~~p~ 623 (820)
T PRK07246 550 EKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE-----KDKKQDQLVVVDQDMPL 623 (820)
T ss_pred CcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC-----CChHHccEEEeCCCCCC
Confidence 11135688888884 2212 22221 1122221111 01111122221 11
Q ss_pred ------chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCC
Q 007365 379 ------SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 379 ------~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
..-...+.+.+..... ..+++||+++|.+..+.+++.|....+++ ...+... .+..++++|+.+..
T Consensus 624 ~~~~~~~~~~~~~~~~i~~~~~-----~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~ 695 (820)
T PRK07246 624 VTETSDEVYAEEIAKRLEELKQ-----LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ 695 (820)
T ss_pred CCCCChHHHHHHHHHHHHHHHh-----cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC
Confidence 1222345555544332 26789999999999999999997665444 4444221 35678999999888
Q ss_pred cEEEEccccccCCCCC--CccEEEEecCCC------------------------------CHhHHHHHhhccccCCCcce
Q 007365 453 PILVATDVAARGLDIP--HVAHVVNFDLPN------------------------------DIDDYVHRIGRTGRAGKSGL 500 (606)
Q Consensus 453 ~iLVaT~v~~~GlDip--~v~~VI~~d~p~------------------------------s~~~y~QRiGR~gR~g~~G~ 500 (606)
.||++|+.+.+|||+| +...||...+|. .+..+.|-+||.-|.-.+--
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 8999999999999997 355667666553 12334699999999865333
Q ss_pred EEEEeccC--ChhhHHHHHHHHH
Q 007365 501 ATAFFNEN--NLSLARPLAELMQ 521 (606)
Q Consensus 501 ~~~~~~~~--~~~~~~~l~~~l~ 521 (606)
++++++.. ...+-+.+.+.|-
T Consensus 776 vv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 776 AVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred EEEEECCcccccHHHHHHHHhCC
Confidence 45555542 2334444444443
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=6.4e-17 Score=178.57 Aligned_cols=278 Identities=19% Similarity=0.155 Sum_probs=178.3
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|--+. +.-.+.-|+.+.||.|||+++.+|++-..+..+ .|-||+++..||.+-++++..+
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~-------------~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALTGK-------------GVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhcCC-------------ceEEEeCCHHHHHHHHHHHHHH
Confidence 4667776554 444567899999999999999999975554332 2899999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHH-HHHHhc------cccccceeEEEEecccccc-cCC-----
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLV-DLLERA------RVSLQMIRYLALDEADRML-DMG----- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~-~~l~~~------~~~l~~~~~lVlDEah~~~-~~g----- 310 (606)
...+|+.+.++.++.+..+ +.-...|||+++|..-|- +.|... ......+.+.|+||+|.++ |..
T Consensus 141 y~~LGLsvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLi 218 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEE--RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLI 218 (870)
T ss_pred HHHcCCceeeeCCCCChHH--HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCcee
Confidence 9999999999877766543 333445899999997552 333221 1134568899999999755 220
Q ss_pred ----------CHHHHHHHHHhcCCC-------------------------------------------------------
Q 007365 311 ----------FEPQIRKIVQQMDMP------------------------------------------------------- 325 (606)
Q Consensus 311 ----------f~~~i~~i~~~l~~~------------------------------------------------------- 325 (606)
....+..++..+...
T Consensus 219 ISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d 298 (870)
T CHL00122 219 ISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKN 298 (870)
T ss_pred ccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcC
Confidence 001111111111000
Q ss_pred -----------------------------------------CCCC----------------ceEEEEeccChHHHHHHHH
Q 007365 326 -----------------------------------------PPGV----------------RQTMLFSATFPKEIQKLAS 348 (606)
Q Consensus 326 -----------------------------------------~~~~----------------~q~ll~SAT~~~~i~~l~~ 348 (606)
..+. ..+.+||.|...+-.++.+
T Consensus 299 ~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~ 378 (870)
T CHL00122 299 VHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEK 378 (870)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHH
Confidence 0000 1234566665544444444
Q ss_pred HhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCc
Q 007365 349 DFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPA 428 (606)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~ 428 (606)
.|-.+.+. +....+....-.....+.....|...+++.+..... +..|+||-|.|.+..+.|++.|...+++.
T Consensus 379 iY~l~vv~--IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~-----~grPVLIgT~SIe~SE~ls~~L~~~gi~h 451 (870)
T CHL00122 379 IYNLEVVC--IPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQ-----TGRPILIGTTTIEKSELLSQLLKEYRLPH 451 (870)
T ss_pred HhCCCEEE--CCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHh-----cCCCEEEeeCCHHHHHHHHHHHHHcCCcc
Confidence 33222222 211111111111223455667788877777766543 48899999999999999999999999999
Q ss_pred EEeeCccCHHHHHH-HHHhccCCC-CcEEEEccccccCCCC
Q 007365 429 TTIHGDRTQQEREL-ALRSFKSGK-TPILVATDVAARGLDI 467 (606)
Q Consensus 429 ~~lhg~~~~~~R~~-~l~~F~~g~-~~iLVaT~v~~~GlDi 467 (606)
.++++.-.+.+++. ++.. .|+ -.|.|||++|.||.||
T Consensus 452 ~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 452 QLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred ceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCe
Confidence 99998632223333 3332 343 4599999999999998
No 134
>COG4889 Predicted helicase [General function prediction only]
Probab=99.76 E-value=7.1e-18 Score=180.40 Aligned_cols=357 Identities=18% Similarity=0.228 Sum_probs=205.7
Q ss_pred HHHHHHHhCCCCCCCHHHHhHHHHHhcC-----CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEE
Q 007365 152 ELNLNIRRCKYVKPTPVQRHAIPISVAG-----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALIL 226 (606)
Q Consensus 152 ~l~~~l~~~~~~~p~~~Q~~ai~~i~~~-----~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil 226 (606)
++..++..++-.+|+|+|+.||.+.+++ |.-||. .+|+|||++.|- |...+... ++|+|
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIM-AcGTGKTfTsLk-isEala~~--------------~iL~L 212 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIM-ACGTGKTFTSLK-ISEALAAA--------------RILFL 212 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEE-ecCCCccchHHH-HHHHHhhh--------------heEee
Confidence 4445555666678999999999998875 444544 499999998553 33333332 39999
Q ss_pred ccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChH-----------------------HHHHHH--hcCCcEEEecHHHH
Q 007365 227 APTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPIN-----------------------QQLREL--ERGVDILVATPGRL 281 (606)
Q Consensus 227 ~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~-----------------------~~~~~l--~~~~~Ilv~Tp~~L 281 (606)
+|+..|..|..++...-. ...++...++...... +.+... ..+--|+++|++.|
T Consensus 213 vPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl 291 (1518)
T COG4889 213 VPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSL 291 (1518)
T ss_pred cchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccch
Confidence 999999999776665432 2244444444332211 111111 22456999999999
Q ss_pred HHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCC-CCCCCceEEEEeccChH---H---------------
Q 007365 282 VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM-PPPGVRQTMLFSATFPK---E--------------- 342 (606)
Q Consensus 282 ~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~-~~~~~~q~ll~SAT~~~---~--------------- 342 (606)
...-+....-+..+++||.|||||.-.......=..-+..+.. ..-+..+.+.|+||+.- .
T Consensus 292 ~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SM 371 (1518)
T COG4889 292 PRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSM 371 (1518)
T ss_pred HHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeecc
Confidence 8877777778899999999999984321100000000000000 00011234667777311 1
Q ss_pred ---------------HHHHHHHhhcCcEEEEeccccCccCceeEEE-EEeccchhhhHHHHHH------HHHHhccc---
Q 007365 343 ---------------IQKLASDFLANYVFLAVGRVGSSTDLIVQRV-EYVHESDKRSHLMDLL------HAQVANGV--- 397 (606)
Q Consensus 343 ---------------i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~k~~~l~~ll------~~~~~~~~--- 397 (606)
-+.+.+.+|.+|.++...-.........+.. .-....-+.+..-.++ ........
T Consensus 372 DDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~ 451 (1518)
T COG4889 372 DDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLK 451 (1518)
T ss_pred chhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 1234445555654443322111111111111 1111111111111111 11110000
Q ss_pred -----CCCCceEEEEEcchhhHHHHHHHHH-----------h--CCCC--cEEeeCccCHHHHHHHHH---hccCCCCcE
Q 007365 398 -----HGKQSLTLVFVETKKGADALEHWLY-----------M--NGFP--ATTIHGDRTQQERELALR---SFKSGKTPI 454 (606)
Q Consensus 398 -----~~~~~~~LVF~~s~~~~~~l~~~L~-----------~--~~~~--~~~lhg~~~~~~R~~~l~---~F~~g~~~i 454 (606)
.....++|-||.+.++...+++.+. . .++. +-.+.|.|+..+|...+. .|....++|
T Consensus 452 ~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI 531 (1518)
T COG4889 452 NIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKI 531 (1518)
T ss_pred CCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhee
Confidence 0112457889988877766665542 1 1333 345668899999976654 456788999
Q ss_pred EEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCC--C-cceEEEEec-------------cCChhhHHHHHH
Q 007365 455 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG--K-SGLATAFFN-------------ENNLSLARPLAE 518 (606)
Q Consensus 455 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g--~-~G~~~~~~~-------------~~~~~~~~~l~~ 518 (606)
|--..++++|+|+|.++.||+|++-++.-+.+|.+||+.|.. + -|..++-+. ..+...+.++++
T Consensus 532 lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVln 611 (1518)
T COG4889 532 LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLK 611 (1518)
T ss_pred eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999942 2 244444332 223445555666
Q ss_pred HHHHhcC
Q 007365 519 LMQESNQ 525 (606)
Q Consensus 519 ~l~~~~q 525 (606)
.|+....
T Consensus 612 ALRShD~ 618 (1518)
T COG4889 612 ALRSHDE 618 (1518)
T ss_pred HHHhcCH
Confidence 6665444
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.3e-17 Score=148.59 Aligned_cols=120 Identities=43% Similarity=0.724 Sum_probs=110.0
Q ss_pred hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007365 380 DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 380 ~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
.|...+.+++..... ...++||||++++.++.+++.|.....++..+|++++..+|..+++.|+++...|||+|+
T Consensus 12 ~k~~~i~~~i~~~~~-----~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~ 86 (131)
T cd00079 12 EKLEALLELLKEHLK-----KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD 86 (131)
T ss_pred HHHHHHHHHHHhccc-----CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 677777777766432 367899999999999999999999899999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEE
Q 007365 460 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 504 (606)
Q Consensus 460 v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~ 504 (606)
++++|+|+|.+++||++++|++..+|+|++||++|.|+.|.+++|
T Consensus 87 ~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999998888764
No 136
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=3.3e-17 Score=168.26 Aligned_cols=338 Identities=13% Similarity=0.038 Sum_probs=231.7
Q ss_pred HHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccch
Q 007365 151 EELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTR 230 (606)
Q Consensus 151 ~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr 230 (606)
+.+.+.++.+.-.....+|.++|..+.+|++.++.-.|-+||.+++.+..+..+..... ...+++.|+.
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-----------s~~~~~~~~~ 341 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-----------TNSLLPSEMV 341 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-----------cceecchhHH
Confidence 44445555555667789999999999999999999999999999999888766554322 1278899999
Q ss_pred HHHHHHHHHHHHhh---hcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc----cccceeEEEEecc
Q 007365 231 ELSSQIHDEAKKFS---YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV----SLQMIRYLALDEA 303 (606)
Q Consensus 231 ~La~Qi~~~~~~~~---~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~----~l~~~~~lVlDEa 303 (606)
+++.....-+.-.. ....-.++-.+.+.+........+.+.++|++.|........-... .+-...+++.||+
T Consensus 342 ~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~ 421 (1034)
T KOG4150|consen 342 EHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSC 421 (1034)
T ss_pred HHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccce
Confidence 99876433222110 0011123444566665666666677899999999887655433222 2334567999999
Q ss_pred cccccCC---CHHHHHHHHHhcCCC-CCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEec--
Q 007365 304 DRMLDMG---FEPQIRKIVQQMDMP-PPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVH-- 377 (606)
Q Consensus 304 h~~~~~g---f~~~i~~i~~~l~~~-~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~-- 377 (606)
|..+-.- ...+++.+...+... .....|++-.|||+...++...+-+--+.+.+. ..+-....-...+.+.+
T Consensus 422 ~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li--~~DGSPs~~K~~V~WNP~~ 499 (1034)
T KOG4150|consen 422 ALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELV--TIDGSPSSEKLFVLWNPSA 499 (1034)
T ss_pred eeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEE--EecCCCCccceEEEeCCCC
Confidence 9755321 234555555444221 234678999999998877766554433332221 22222222233333332
Q ss_pred -------cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC----C----CCcEEeeCccCHHHHHH
Q 007365 378 -------ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN----G----FPATTIHGDRTQQEREL 442 (606)
Q Consensus 378 -------~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~----~----~~~~~lhg~~~~~~R~~ 442 (606)
.+.+......++.+.+.+ +-++|-||.+++.|+.+....++. + -.+..+.|+....+|.+
T Consensus 500 ~P~~~~~~~~~i~E~s~~~~~~i~~-----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRK 574 (1034)
T KOG4150|consen 500 PPTSKSEKSSKVVEVSHLFAEMVQH-----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRK 574 (1034)
T ss_pred CCcchhhhhhHHHHHHHHHHHHHHc-----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHH
Confidence 233344444555555544 567999999999999876655432 1 13456889999999999
Q ss_pred HHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEec
Q 007365 443 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 506 (606)
Q Consensus 443 ~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~ 506 (606)
+..+.-.|+..-+|||++++-||||-.++.|++..+|.|+.++.|..|||||.+++..++.+..
T Consensus 575 IE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 575 IESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred HHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999988887766553
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.73 E-value=1.4e-17 Score=134.51 Aligned_cols=78 Identities=41% Similarity=0.810 Sum_probs=75.7
Q ss_pred HHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCC
Q 007365 419 HWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG 496 (606)
Q Consensus 419 ~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g 496 (606)
++|+..++.+..+|+++++.+|..+++.|+++...|||||+++++|||+|.+++||++++|+++.+|+|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999975
No 138
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.72 E-value=1.6e-15 Score=154.16 Aligned_cols=315 Identities=17% Similarity=0.216 Sum_probs=202.5
Q ss_pred CCCCHHHHhHHHHHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISV-AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~-~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
..+-|+|.+.+...+ .+-.+++..++|.|||+.++. ++..+...+. .|||||.. |-..|++++.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla--IA~yyraEwp------------lliVcPAs-vrftWa~al~ 261 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA--IARYYRAEWP------------LLIVCPAS-VRFTWAKALN 261 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH--HHHHHhhcCc------------EEEEecHH-HhHHHHHHHH
Confidence 457899999998654 467888899999999997653 3333333322 89999964 5677999999
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
+|..... .+.++.++.+.. ..+.....|.|.+++.|..+-. .+.-..+.+||+||+|.+.+.. ...++.++..
T Consensus 262 r~lps~~-pi~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dl 334 (689)
T KOG1000|consen 262 RFLPSIH-PIFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDL 334 (689)
T ss_pred Hhccccc-ceEEEecccCCc---cccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhH
Confidence 9875432 244445544321 1222335799999998865432 2223458899999999877653 2223434333
Q ss_pred cCCCCCCCceEEEEeccC----hHHH---------------HHHHHHhhcCc-EEEEecccc------------------
Q 007365 322 MDMPPPGVRQTMLFSATF----PKEI---------------QKLASDFLANY-VFLAVGRVG------------------ 363 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT~----~~~i---------------~~l~~~~l~~~-~~~~~~~~~------------------ 363 (606)
+ .....+|++|.|+ |.++ .+++..|+.-. +.+..+..+
T Consensus 335 l----k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIR 410 (689)
T KOG1000|consen 335 L----KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIR 410 (689)
T ss_pred H----HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHH
Confidence 3 3345689999995 2221 11222222110 000000000
Q ss_pred --------CccCceeEEEEEecc--------------------------------------chhhhHHHHHHHHHHhccc
Q 007365 364 --------SSTDLIVQRVEYVHE--------------------------------------SDKRSHLMDLLHAQVANGV 397 (606)
Q Consensus 364 --------~~~~~i~~~~~~~~~--------------------------------------~~k~~~l~~ll~~~~~~~~ 397 (606)
..... .+.+.++.. ..|...+.+.|..... ..
T Consensus 411 RlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~-l~ 488 (689)
T KOG1000|consen 411 RLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYF-LP 488 (689)
T ss_pred HHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcc-cc
Confidence 00001 111111110 0111112222211000 12
Q ss_pred CCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCC-CCcE-EEEccccccCCCCCCccEEEE
Q 007365 398 HGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG-KTPI-LVATDVAARGLDIPHVAHVVN 475 (606)
Q Consensus 398 ~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~i-LVaT~v~~~GlDip~v~~VI~ 475 (606)
..+..|.||||......+.+..++++.++..+.|.|..+..+|+...+.|+.. +..| +++...+..|||+...+.||+
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 34577899999999999999999999999999999999999999999999865 3444 556688899999999999999
Q ss_pred ecCCCCHhHHHHHhhccccCCCcceEEEEe
Q 007365 476 FDLPNDIDDYVHRIGRTGRAGKSGLATAFF 505 (606)
Q Consensus 476 ~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~ 505 (606)
..++||+--.+|.=.|+.|.|++..+.+.|
T Consensus 569 aEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 569 AELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EEecCCCceEEechhhhhhccccceeeEEE
Confidence 999999999999999999999987654443
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=3.5e-15 Score=164.55 Aligned_cols=279 Identities=18% Similarity=0.154 Sum_probs=178.9
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|--.- +.-++.-|+.+.||-|||+++.+|++-..+..+ -|-||+++..||..-++++..+
T Consensus 85 r~ydVQliGg--l~Lh~G~IAEM~TGEGKTL~atlpaylnAL~Gk-------------gVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 85 RHFDVQLIGG--MVLHEGQIAEMKTGEGKTLVATLPSYLNALTGK-------------GVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred CcchhHHHhh--hhhcCCceeeecCCCChhHHHHHHHHHHhhcCC-------------CeEEEeCCHHHHHhHHHHHHHH
Confidence 4556665443 444567899999999999999999987666543 2899999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-----HHHHHhc--cccccceeEEEEecccccc-cCC-----
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-----VDLLERA--RVSLQMIRYLALDEADRML-DMG----- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-----~~~l~~~--~~~l~~~~~lVlDEah~~~-~~g----- 310 (606)
...+|+.|.++..+.+.. .+.....|||+++|...| .+.+... ......+.+.|+||+|.+| |..
T Consensus 150 y~~LGLtvg~i~~~~~~~--err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPE--ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHHhCCeEEEECCCCChH--HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccc
Confidence 999999999887765433 334556799999999887 3333221 1235678899999999765 221
Q ss_pred ----------CHHHHHHHHHhcCC------C-------------------------------------------------
Q 007365 311 ----------FEPQIRKIVQQMDM------P------------------------------------------------- 325 (606)
Q Consensus 311 ----------f~~~i~~i~~~l~~------~------------------------------------------------- 325 (606)
.......++..+.. .
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 01111112211110 0
Q ss_pred -----------------------------------------------CCCC----------------ceEEEEeccChHH
Q 007365 326 -----------------------------------------------PPGV----------------RQTMLFSATFPKE 342 (606)
Q Consensus 326 -----------------------------------------------~~~~----------------~q~ll~SAT~~~~ 342 (606)
.... .++.+||.|...+
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 0000 0223444454333
Q ss_pred HHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHH
Q 007365 343 IQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLY 422 (606)
Q Consensus 343 i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~ 422 (606)
-.++.+.|-.+. +.+....+....-.....+.....|...+++.+.+... +..|+||-|.|.+..+.|+..|.
T Consensus 388 ~~Ef~~iY~l~V--v~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~-----~GrPVLIgT~SVe~SE~ls~~L~ 460 (939)
T PRK12902 388 EVEFEKTYKLEV--TVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHK-----QGRPVLVGTTSVEKSELLSALLQ 460 (939)
T ss_pred HHHHHHHhCCcE--EEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEeeCCHHHHHHHHHHHH
Confidence 333333322222 22211111111111223455667888888877776543 38899999999999999999999
Q ss_pred hCCCCcEEeeCccCHHHHHH-HHHhccCCC-CcEEEEccccccCCCCC
Q 007365 423 MNGFPATTIHGDRTQQEREL-ALRSFKSGK-TPILVATDVAARGLDIP 468 (606)
Q Consensus 423 ~~~~~~~~lhg~~~~~~R~~-~l~~F~~g~-~~iLVaT~v~~~GlDip 468 (606)
..+++...++..-.+.+++. ++.. .|+ -.|-|||++|.||.||.
T Consensus 461 ~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 461 EQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 99999999998633323333 3332 343 34999999999999984
No 140
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.72 E-value=9.3e-15 Score=160.06 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=82.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccC----CCCcEEEEccccccCCCC---------
Q 007365 401 QSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS----GKTPILVATDVAARGLDI--------- 467 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~----g~~~iLVaT~v~~~GlDi--------- 467 (606)
.+.+||.+.+.+.++.+++.|...---.+.+.|+.+ .+..++++|+. +.-.||++|+-+-+|||+
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~ 547 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDK 547 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCC
Confidence 678999999999999999999654223445666542 45668888887 478899999999999999
Q ss_pred -CCccEEEEecCCCC-------------------------HhHHHHHhhccccCCCc--ceEEEEeccC-ChhhHHHHHH
Q 007365 468 -PHVAHVVNFDLPND-------------------------IDDYVHRIGRTGRAGKS--GLATAFFNEN-NLSLARPLAE 518 (606)
Q Consensus 468 -p~v~~VI~~d~p~s-------------------------~~~y~QRiGR~gR~g~~--G~~~~~~~~~-~~~~~~~l~~ 518 (606)
..+.+||+..+|.. .-.+.|-+||.-|.-.. --+++++++. ...+-+.+.+
T Consensus 548 G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~~ 627 (636)
T TIGR03117 548 DNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQE 627 (636)
T ss_pred CCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHHH
Confidence 23889998887742 22345889999997664 3344444433 3334444444
Q ss_pred HH
Q 007365 519 LM 520 (606)
Q Consensus 519 ~l 520 (606)
..
T Consensus 628 ~~ 629 (636)
T TIGR03117 628 SV 629 (636)
T ss_pred HH
Confidence 33
No 141
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=1.7e-16 Score=173.03 Aligned_cols=316 Identities=19% Similarity=0.237 Sum_probs=207.2
Q ss_pred CCCHHHHhHHHHHhc----CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVA----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~----~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
++.+||.+.+.++.. +-+.|+..+||.|||.+ .+.++..++..+... +| -||++|+..|.+ |..+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~--------GP-~LvivPlstL~N-W~~E 462 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQ--------GP-FLIIVPLSTLVN-WSSE 462 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccC--------CC-eEEeccccccCC-chhh
Confidence 588999999987644 36788899999999996 566666777665433 23 688999999877 7788
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHH--HHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHH
Q 007365 240 AKKFSYQTGVKVVVAYGGAPINQQLR--ELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 317 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~ 317 (606)
+.+|+. .+..+...|.......+. ......+||++|++.++. .+..+.--++.|+||||.|+|.+.. ..+..
T Consensus 463 f~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~ 536 (1157)
T KOG0386|consen 463 FPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTD 536 (1157)
T ss_pred cccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHH
Confidence 887753 344444344332222111 112358999999998876 2333333456789999999987632 11111
Q ss_pred HHHhcCCCCCCCceEEEEeccC----------------------------------------------------------
Q 007365 318 IVQQMDMPPPGVRQTMLFSATF---------------------------------------------------------- 339 (606)
Q Consensus 318 i~~~l~~~~~~~~q~ll~SAT~---------------------------------------------------------- 339 (606)
.+..- -.....++++.|+
T Consensus 537 ~L~t~----y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkV 612 (1157)
T KOG0386|consen 537 TLNTH----YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKV 612 (1157)
T ss_pred Hhhcc----ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHh
Confidence 11100 0111123333331
Q ss_pred -----------------hHHHHHHHHHhh-----------cCcEEEEecc----c------------------cCccCce
Q 007365 340 -----------------PKEIQKLASDFL-----------ANYVFLAVGR----V------------------GSSTDLI 369 (606)
Q Consensus 340 -----------------~~~i~~l~~~~l-----------~~~~~~~~~~----~------------------~~~~~~i 369 (606)
|..++.+++--+ .+.-.+.++. . .....++
T Consensus 613 LRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 613 LRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred hhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 111111110000 0000000000 0 0000000
Q ss_pred eE----E---EEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHH
Q 007365 370 VQ----R---VEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 442 (606)
Q Consensus 370 ~~----~---~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 442 (606)
.. . ...+....|++.|-.+|...... +.++|.||......+.+.++|....+....+.|.....+|..
T Consensus 693 e~~~~~~~~~~dL~R~sGKfELLDRiLPKLkat-----gHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ 767 (1157)
T KOG0386|consen 693 ENSYTLHYDIKDLVRVSGKFELLDRILPKLKAT-----GHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGD 767 (1157)
T ss_pred ccccccccChhHHHHhccHHHHHHhhhHHHHhc-----CcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHH
Confidence 00 0 12223456777777777666554 788999999999999999999999999999999999999999
Q ss_pred HHHhccCCC---CcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEe
Q 007365 443 ALRSFKSGK---TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 505 (606)
Q Consensus 443 ~l~~F~~g~---~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~ 505 (606)
.++.|..-. ..+|.+|.....|+|+..++.||.||.-|++..+.|+.-|+.|.|++-.+-+|.
T Consensus 768 ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 768 LLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred HHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 999998654 448999999999999999999999999999999999999999999987766664
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=8.3e-15 Score=170.42 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCC--CcEEeeCccCHHHHHHHHHhccCCCCcEEEEcccc
Q 007365 384 HLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGF--PATTIHGDRTQQERELALRSFKSGKTPILVATDVA 461 (606)
Q Consensus 384 ~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~ 461 (606)
.+.+.+...... ..+.+|||++|.+..+.+++.|..... ....+.-+++...|.++++.|+.+.-.||++|..+
T Consensus 739 ~la~~i~~l~~~----~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sF 814 (928)
T PRK08074 739 EVAAYIAKIAKA----TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcc
Confidence 444444444322 256799999999999999999975422 12222223444568899999999888899999999
Q ss_pred ccCCCCCC--ccEEEEecCCC------------------------------CHhHHHHHhhccccCCCcceEEEEeccC-
Q 007365 462 ARGLDIPH--VAHVVNFDLPN------------------------------DIDDYVHRIGRTGRAGKSGLATAFFNEN- 508 (606)
Q Consensus 462 ~~GlDip~--v~~VI~~d~p~------------------------------s~~~y~QRiGR~gR~g~~G~~~~~~~~~- 508 (606)
.+|||+|+ +.+||...+|. .+..+.|-+||.-|..++--++++++..
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~ 894 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRL 894 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCcc
Confidence 99999997 57888877664 1223458899999987643345555543
Q ss_pred -ChhhHHHHHHHH
Q 007365 509 -NLSLARPLAELM 520 (606)
Q Consensus 509 -~~~~~~~l~~~l 520 (606)
...+-+.+.+.|
T Consensus 895 ~~k~Yg~~~l~sL 907 (928)
T PRK08074 895 TTTSYGKYFLESL 907 (928)
T ss_pred ccchHHHHHHHhC
Confidence 333444444443
No 143
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.69 E-value=1.8e-15 Score=153.50 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=104.4
Q ss_pred chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCC-CCc-EEE
Q 007365 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG-KTP-ILV 456 (606)
Q Consensus 379 ~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~-iLV 456 (606)
+.|.+.|.+.|....... ...+.|||.+-....+.+.-.|.+.|+.|+.+.|+|+...|..+++.|++. .+. +||
T Consensus 619 STKIEAL~EEl~~l~~rd---~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv 695 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERD---RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV 695 (791)
T ss_pred hhHHHHHHHHHHHHHHcc---cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence 345555555554444332 255789999999999999999999999999999999999999999999976 444 567
Q ss_pred EccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCC--cceEEEEeccCC
Q 007365 457 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK--SGLATAFFNENN 509 (606)
Q Consensus 457 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~--~G~~~~~~~~~~ 509 (606)
+-.+...-|++..+.+|+.+|+.||++--.|...|..|.|+ +=.++.|+-++.
T Consensus 696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 77888999999999999999999999999999999999887 446677776543
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=9e-16 Score=137.84 Aligned_cols=144 Identities=44% Similarity=0.592 Sum_probs=109.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCC
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAP 259 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~ 259 (606)
+++++.++||+|||.+++..+...+.... ..++||++|++.|+.|+.+.+..+... .+.+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-----------~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-----------GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-----------CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcc
Confidence 46899999999999988877776554311 134999999999999999999987654 677777777776
Q ss_pred hHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccC
Q 007365 260 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF 339 (606)
Q Consensus 260 ~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~ 339 (606)
...+........+|+|+|++.+...+.........+++||+||+|.+....+........... ....+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~----~~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKL----PKDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhC----CccceEEEEeccC
Confidence 666655556678999999999998887665556778999999999988765444321122222 4566799999995
No 145
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.66 E-value=4.2e-16 Score=167.58 Aligned_cols=322 Identities=17% Similarity=0.204 Sum_probs=202.5
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
.-.+-.+.+.++..++.++|...||+|||..+...||..++.+..... --+.+..|+|..+..+++.+..--
T Consensus 379 va~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~--------~na~v~qprrisaisiaerva~er 450 (1282)
T KOG0921|consen 379 VAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGAS--------FNAVVSQPRRISAISLAERVANER 450 (1282)
T ss_pred HHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccccc--------ccceeccccccchHHHHHHHHHhh
Confidence 334555666777888999999999999999999999999887653322 238999999999999887765421
Q ss_pred hcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCC
Q 007365 245 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 324 (606)
Q Consensus 245 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~ 324 (606)
...++-.++ .+..........--.|++||.+-|+.+++.. +..++++|+||+|+..-.+ ..+..++..+..
T Consensus 451 ---~e~~g~tvg-y~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~--dfll~~lr~m~~ 521 (1282)
T KOG0921|consen 451 ---GEEVGETCG-YNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDT--DFVLIVLREMIS 521 (1282)
T ss_pred ---HHhhccccc-ccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccch--HHHHHHHHhhhc
Confidence 111111111 1111111111112369999999999998875 5678899999999643221 233333333322
Q ss_pred CCCCCceEEEEeccChHHH--------------------HHHHHHhhcCcEEEEeccccCc------------cC-----
Q 007365 325 PPPGVRQTMLFSATFPKEI--------------------QKLASDFLANYVFLAVGRVGSS------------TD----- 367 (606)
Q Consensus 325 ~~~~~~q~ll~SAT~~~~i--------------------~~l~~~~l~~~~~~~~~~~~~~------------~~----- 367 (606)
. ..+..+++||||+..+. +.+...++..++.......... .+
T Consensus 522 t-y~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n 600 (1282)
T KOG0921|consen 522 T-YRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRN 600 (1282)
T ss_pred c-chhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccc
Confidence 1 23444566666654421 2222222111111100000000 00
Q ss_pred -ce----------eEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-------CCCcE
Q 007365 368 -LI----------VQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-------GFPAT 429 (606)
Q Consensus 368 -~i----------~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-------~~~~~ 429 (606)
++ ........+.+....|.+.+...... .+-.+.++||.+.+..+..|..+|... .++++
T Consensus 601 ~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s--~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~il 678 (1282)
T KOG0921|consen 601 MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIAS--RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEIL 678 (1282)
T ss_pred cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcc--cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccc
Confidence 00 00000001111122233333222222 233667999999999999999988543 57888
Q ss_pred EeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecC------------------CCCHhHHHHHhhc
Q 007365 430 TIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL------------------PNDIDDYVHRIGR 491 (606)
Q Consensus 430 ~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~------------------p~s~~~y~QRiGR 491 (606)
.+|+.+...++.++++....|..+++++|.+++..+.|.++.+||..+. ..+....+||.||
T Consensus 679 p~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr 758 (1282)
T KOG0921|consen 679 PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGR 758 (1282)
T ss_pred cchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhccc
Confidence 9999999999999999999999999999999999999999999885443 2366778999999
Q ss_pred cccCCCcceEEEEecc
Q 007365 492 TGRAGKSGLATAFFNE 507 (606)
Q Consensus 492 ~gR~g~~G~~~~~~~~ 507 (606)
++|. ++|.|.++++.
T Consensus 759 ~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 759 AGRV-RPGFCFHLCSR 773 (1282)
T ss_pred Ccee-cccccccccHH
Confidence 9998 88999998863
No 146
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.64 E-value=8.2e-14 Score=145.44 Aligned_cols=295 Identities=20% Similarity=0.259 Sum_probs=210.1
Q ss_pred cCcEEEEEccchHHHHHHHHHHHHhhhcCCcEE------EEEEC--------------CCChHHHHHHHhc---------
Q 007365 219 VYPLALILAPTRELSSQIHDEAKKFSYQTGVKV------VVAYG--------------GAPINQQLRELER--------- 269 (606)
Q Consensus 219 ~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~------~~~~g--------------g~~~~~~~~~l~~--------- 269 (606)
..|+||||+|+|..|-++.+.+.++.... ..+ ..-+| ......+...+-.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~-~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPG-KQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCcc-chHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 34889999999999999998888765431 000 00011 0111122222211
Q ss_pred ----------------CCcEEEecHHHHHHHHHh------ccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCC
Q 007365 270 ----------------GVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 327 (606)
Q Consensus 270 ----------------~~~Ilv~Tp~~L~~~l~~------~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~ 327 (606)
..|||||+|=-|...+.. ....|+++.++|+|.||.|+...| +.+..+++.+...+.
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCC
Confidence 378999999999888874 233589999999999998775554 566777777765532
Q ss_pred C--------------------CceEEEEeccChHHHHHHHHHhhcCcE---EEEecc-----ccCccCceeEEEEEeccc
Q 007365 328 G--------------------VRQTMLFSATFPKEIQKLASDFLANYV---FLAVGR-----VGSSTDLIVQRVEYVHES 379 (606)
Q Consensus 328 ~--------------------~~q~ll~SAT~~~~i~~l~~~~l~~~~---~~~~~~-----~~~~~~~i~~~~~~~~~~ 379 (606)
. -+|+|++|+...+++..+....+.|+. .+.... .......+.|.+..++..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 2 279999999999999999998777642 111111 123334566766655432
Q ss_pred -------hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCC
Q 007365 380 -------DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 380 -------~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
.+.....+.+.-.+.. ......+|||+++--+--.|-++|+..++....+|.-.++.+-..+-..|..|+.
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~--~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKR--DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhh--ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 2233333322222221 2346779999999999889999999999999999999999999999999999999
Q ss_pred cEEEEcccc--ccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCC------cceEEEEeccCChhhHHHHH
Q 007365 453 PILVATDVA--ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK------SGLATAFFNENNLSLARPLA 517 (606)
Q Consensus 453 ~iLVaT~v~--~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~------~G~~~~~~~~~~~~~~~~l~ 517 (606)
+||+.|.-+ -+=..|..|.+||.|.+|..+.-|...+.-...... ...|+++|+.-|.-.++.++
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 999999654 467789999999999999999999887755544332 57999999999887776654
No 147
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.64 E-value=1.4e-14 Score=152.36 Aligned_cols=126 Identities=18% Similarity=0.301 Sum_probs=110.1
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCC-cEEE
Q 007365 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT-PILV 456 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~-~iLV 456 (606)
++.|+..|-++|...... +.++|+|+...++++.+.++|...++..+.+.|.....+|..++.+|....+ -+|+
T Consensus 1026 dSgKL~~LDeLL~kLkae-----gHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLL 1100 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAE-----GHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLL 1100 (1185)
T ss_pred cccceeeHHHHHHHhhcC-----CceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEE
Confidence 466777777777776544 7889999999999999999999999999999999999999999999997544 3788
Q ss_pred EccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcce--EEEEeccC
Q 007365 457 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL--ATAFFNEN 508 (606)
Q Consensus 457 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~--~~~~~~~~ 508 (606)
+|.+..-||++..++.||+||..|++..-.|.+.||.|.|++-. ++.+++..
T Consensus 1101 STRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1101 STRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 99999999999999999999999999999999999999999765 44455443
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=2.4e-15 Score=142.32 Aligned_cols=151 Identities=24% Similarity=0.246 Sum_probs=100.6
Q ss_pred CCCHHHHhHHHHHhc-------CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHH
Q 007365 164 KPTPVQRHAIPISVA-------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 236 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~-------~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi 236 (606)
+|+++|.+++..+.. .+.+++.++||||||.+++..+.. +.. .+||++|+..|+.|+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~-l~~---------------~~l~~~p~~~l~~Q~ 66 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILE-LAR---------------KVLIVAPNISLLEQW 66 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHH-HHC---------------EEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhc-ccc---------------ceeEecCHHHHHHHH
Confidence 589999999998874 689999999999999987754443 332 299999999999999
Q ss_pred HHHHHHhhhcCCcEEEEE------------ECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc-----------ccccc
Q 007365 237 HDEAKKFSYQTGVKVVVA------------YGGAPINQQLRELERGVDILVATPGRLVDLLERA-----------RVSLQ 293 (606)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~------------~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~-----------~~~l~ 293 (606)
.+.+..+.... ...... .................+|+++|...|....... .....
T Consensus 67 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 67 YDEFDDFGSEK-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp HHHHHHHSTTS-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred HHHHHHhhhhh-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 99997664321 111100 0111111222222345789999999998776531 12455
Q ss_pred ceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccCh
Q 007365 294 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 340 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~ 340 (606)
..++||+||||++.... .+..++. . ....+|+||||+.
T Consensus 146 ~~~~vI~DEaH~~~~~~---~~~~i~~-~-----~~~~~l~lTATp~ 183 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDS---SYREIIE-F-----KAAFILGLTATPF 183 (184)
T ss_dssp SESEEEEETGGCTHHHH---HHHHHHH-S-----SCCEEEEEESS-S
T ss_pred cCCEEEEehhhhcCCHH---HHHHHHc-C-----CCCeEEEEEeCcc
Confidence 78899999999876532 1455555 2 3456899999975
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.61 E-value=7.1e-14 Score=153.61 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=95.0
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCC--CcEEEEccccccCCCCCCccEEEEecC
Q 007365 401 QSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK--TPILVATDVAARGLDIPHVAHVVNFDL 478 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~iLVaT~v~~~GlDip~v~~VI~~d~ 478 (606)
..++|||+...++.|.|..+|+.+++-.+.|.|...-++|...+++|+... ..+|++|.....|||+..++.||+||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 667999999999999999999999999999999999999999999999775 357889999999999999999999999
Q ss_pred CCCHhHHHHHhhccccCCCcc--eEEEEeccC
Q 007365 479 PNDIDDYVHRIGRTGRAGKSG--LATAFFNEN 508 (606)
Q Consensus 479 p~s~~~y~QRiGR~gR~g~~G--~~~~~~~~~ 508 (606)
.||+.--.|.-.|+.|.|+.- ..|.|+++.
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999987777777777777654 346666654
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=3.9e-13 Score=152.67 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCC-cEEeeCccCHHHHHHHHHhccCCCC-cEEEEccc
Q 007365 383 SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQQERELALRSFKSGKT-PILVATDV 460 (606)
Q Consensus 383 ~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~l~~F~~g~~-~iLVaT~v 460 (606)
..+...+...... ..+++|||+++.+.++.+++.|...... .+..++. ..+..+++.|+...- .++|+|..
T Consensus 465 ~~~~~~i~~~~~~----~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gs 537 (654)
T COG1199 465 AKLAAYLREILKA----SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGS 537 (654)
T ss_pred HHHHHHHHHHHhh----cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeecc
Confidence 3444444444432 3558999999999999999999876553 3445554 345588888887655 89999999
Q ss_pred cccCCCCCC--ccEEEEecCCC------------------------------CHhHHHHHhhccccCCCcceEEEEeccC
Q 007365 461 AARGLDIPH--VAHVVNFDLPN------------------------------DIDDYVHRIGRTGRAGKSGLATAFFNEN 508 (606)
Q Consensus 461 ~~~GlDip~--v~~VI~~d~p~------------------------------s~~~y~QRiGR~gR~g~~G~~~~~~~~~ 508 (606)
+.+|||+|+ ...||...+|. .+....|.+||+-|.-..--++++++..
T Consensus 538 f~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 538 FWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred ccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 999999987 57788777664 3344579999999975544444444432
Q ss_pred --ChhhHHHHHHHHHHh
Q 007365 509 --NLSLARPLAELMQES 523 (606)
Q Consensus 509 --~~~~~~~l~~~l~~~ 523 (606)
...+-+.+.+.+...
T Consensus 618 ~~~~~y~~~l~~~l~~~ 634 (654)
T COG1199 618 YATKRYGKLLLDSLPPF 634 (654)
T ss_pred chhhhHHHHHHHhCCCC
Confidence 222334444544433
No 151
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=2.4e-14 Score=147.76 Aligned_cols=270 Identities=17% Similarity=0.162 Sum_probs=171.5
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCC
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAP 259 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~ 259 (606)
+-++-++||.||||.-+ |+++...+ ..++.-|.|-||..+++.+.+. ++.+-+++|...
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~ak-------------sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~ 250 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKSAK-------------SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEER 250 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhhhc-------------cceecchHHHHHHHHHHHhhhc----CCCcccccccee
Confidence 44677999999999853 45554432 2899999999999999999885 677777776543
Q ss_pred hHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccC
Q 007365 260 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF 339 (606)
Q Consensus 260 ~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~ 339 (606)
....-. ...+..+-||.++.. .-..+++.|+||+++|-|....=.+.+.+.-+. ..+..+.+
T Consensus 251 ~~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~---AdEiHLCG----- 312 (700)
T KOG0953|consen 251 RFVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA---ADEIHLCG----- 312 (700)
T ss_pred eecCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh---hhhhhccC-----
Confidence 211100 112556666744321 134578999999999988764434433332221 01111111
Q ss_pred hHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHH
Q 007365 340 PKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEH 419 (606)
Q Consensus 340 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~ 419 (606)
.+.+-.++++.+...-. +.....|+....-.-.+.++.-+.... ++. +| .|-+++.+-.+..
T Consensus 313 epsvldlV~~i~k~TGd----------~vev~~YeRl~pL~v~~~~~~sl~nlk------~GD-Cv-V~FSkk~I~~~k~ 374 (700)
T KOG0953|consen 313 EPSVLDLVRKILKMTGD----------DVEVREYERLSPLVVEETALGSLSNLK------PGD-CV-VAFSKKDIFTVKK 374 (700)
T ss_pred CchHHHHHHHHHhhcCC----------eeEEEeecccCcceehhhhhhhhccCC------CCC-eE-EEeehhhHHHHHH
Confidence 22334455554432100 000111111111111112222232221 233 33 3556788888999
Q ss_pred HHHhCCCC-cEEeeCccCHHHHHHHHHhccC--CCCcEEEEccccccCCCCCCccEEEEecCC---------CCHhHHHH
Q 007365 420 WLYMNGFP-ATTIHGDRTQQERELALRSFKS--GKTPILVATDVAARGLDIPHVAHVVNFDLP---------NDIDDYVH 487 (606)
Q Consensus 420 ~L~~~~~~-~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVaT~v~~~GlDip~v~~VI~~d~p---------~s~~~y~Q 487 (606)
.+...+.. +.+|+|+++++.|.+--..|.+ ++++||||||++.+|||+ +++-||++++- -+..+..|
T Consensus 375 kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQ 453 (700)
T KOG0953|consen 375 KIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQ 453 (700)
T ss_pred HHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHH
Confidence 99888665 9999999999999999999987 899999999999999999 78888888764 36778899
Q ss_pred HhhccccCCC---cceEEEEecc
Q 007365 488 RIGRTGRAGK---SGLATAFFNE 507 (606)
Q Consensus 488 RiGR~gR~g~---~G~~~~~~~~ 507 (606)
..|||||.|. .|.+++|..+
T Consensus 454 IAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 454 IAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred HhhcccccccCCcCceEEEeeHh
Confidence 9999999865 4777777654
No 152
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=6.8e-15 Score=119.49 Aligned_cols=81 Identities=48% Similarity=0.766 Sum_probs=77.5
Q ss_pred HHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccC
Q 007365 416 ALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495 (606)
Q Consensus 416 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~ 495 (606)
.+++.|+..++.+..+|++++..+|..+++.|+.+...|||+|+++++|+|+|.+++||.+++|++..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007365 496 G 496 (606)
Q Consensus 496 g 496 (606)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.8e-13 Score=152.65 Aligned_cols=130 Identities=19% Similarity=0.271 Sum_probs=104.6
Q ss_pred EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCc
Q 007365 374 EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP 453 (606)
Q Consensus 374 ~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 453 (606)
.+.....|...+++.+..... ...|+||-+.|.+..+.|+.+|...+++..+|++.....|-+.+-+.=+. -.
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~-----~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--Ga 678 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSE-----AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GT 678 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHH-----CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--Cc
Confidence 344556777777777776654 38899999999999999999999999999888886544444333333232 34
Q ss_pred EEEEccccccCCCCC---Cc-----cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007365 454 ILVATDVAARGLDIP---HV-----AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 454 iLVaT~v~~~GlDip---~v-----~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
|-|||++|.||.||. .| =|||--..+.|..---|-.||+||.|.+|.+..|++-+|.
T Consensus 679 VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 679 VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999999999996 22 3899999999999999999999999999999999987664
No 154
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.55 E-value=1.6e-13 Score=144.91 Aligned_cols=121 Identities=16% Similarity=0.214 Sum_probs=96.1
Q ss_pred chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccC--CCCcE-E
Q 007365 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS--GKTPI-L 455 (606)
Q Consensus 379 ~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~--g~~~i-L 455 (606)
+-|...+++.+..... ....+++|...-......+...|...++....+||.....+|+.+++.|.. |..+| |
T Consensus 728 S~Ki~~~l~~le~i~~----~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmL 803 (901)
T KOG4439|consen 728 SCKIAMVLEILETILT----SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVML 803 (901)
T ss_pred hhHHHHHHHHHHHHhh----cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEE
Confidence 4455566666665522 235566666665566677788899999999999999999999999999964 43444 5
Q ss_pred EEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEE
Q 007365 456 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATA 503 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~ 503 (606)
++-...+.||++-..+|+|.+|+-||+.--.|...|..|.|++-.+++
T Consensus 804 lSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 804 LSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred EEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 566888999999999999999999999999999999999999765543
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=3.4e-12 Score=145.27 Aligned_cols=142 Identities=16% Similarity=0.213 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCC------CcEEeeCccCHHHHHHHHHhccC----CCC
Q 007365 383 SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGF------PATTIHGDRTQQERELALRSFKS----GKT 452 (606)
Q Consensus 383 ~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~------~~~~lhg~~~~~~R~~~l~~F~~----g~~ 452 (606)
..+.+.|...... ..+.+|||++|....+.+.+.+...++ ....+.-.....+++.+++.|+. ++-
T Consensus 508 ~~l~~~i~~~~~~----~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~g 583 (705)
T TIGR00604 508 RNLGELLVEFSKI----IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRG 583 (705)
T ss_pred HHHHHHHHHHhhc----CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCc
Confidence 3444445444322 356799999999999999998875432 11122222223578999999964 455
Q ss_pred cEEEEc--cccccCCCCCC--ccEEEEecCCC-CH------------------------------hHHHHHhhccccCCC
Q 007365 453 PILVAT--DVAARGLDIPH--VAHVVNFDLPN-DI------------------------------DDYVHRIGRTGRAGK 497 (606)
Q Consensus 453 ~iLVaT--~v~~~GlDip~--v~~VI~~d~p~-s~------------------------------~~y~QRiGR~gR~g~ 497 (606)
.||+|+ ..+++|||+++ +..||...+|. ++ ....|.+||+-|.-+
T Consensus 584 avL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 584 AVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred eEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC
Confidence 699999 88999999987 78899998885 11 112489999999866
Q ss_pred cceEEEEeccCChhhHHHHHHHHHHhcCcccHHHHHHHHh
Q 007365 498 SGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASR 537 (606)
Q Consensus 498 ~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L~~~~~~ 537 (606)
+--+++|++..=.. ....+.+|.|+......
T Consensus 664 D~G~iillD~R~~~---------~~~~~~lp~W~~~~~~~ 694 (705)
T TIGR00604 664 DYGSIVLLDKRYAR---------SNKRKKLPKWIQDTIQS 694 (705)
T ss_pred ceEEEEEEehhcCC---------cchhhhcCHHHHhhccc
Confidence 54456666543111 11345678888776653
No 156
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=1e-13 Score=154.19 Aligned_cols=316 Identities=18% Similarity=0.257 Sum_probs=202.7
Q ss_pred CCCHHHHhHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH-HHH
Q 007365 164 KPTPVQRHAIPISVA-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD-EAK 241 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~-~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~-~~~ 241 (606)
...|+|.++++.+.+ +.++++++|+|||||+++-++++. . ....++++++|.-+.+...+. +-+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~----------~~~~~~vyi~p~~~i~~~~~~~w~~ 1208 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----P----------DTIGRAVYIAPLEEIADEQYRDWEK 1208 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----C----------ccceEEEEecchHHHHHHHHHHHHH
Confidence 348899999988766 478999999999999998888764 1 122359999999998877664 456
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCC---C--HHHHH
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---F--EPQIR 316 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g---f--~~~i~ 316 (606)
+|....|..++.+.|..+.+.. +....+|+|+||+++..+ + ..+.+++.|.||.|.+.+.. + ...++
T Consensus 1209 ~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r 1280 (1674)
T KOG0951|consen 1209 KFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMR 1280 (1674)
T ss_pred hhccccCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHH
Confidence 7777788888888777664432 223359999999998766 2 67889999999999877432 0 01255
Q ss_pred HHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc--CcEEEEe--ccccCccCceeEEEEEeccchhhhHHHHHHHHH
Q 007365 317 KIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA--NYVFLAV--GRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQ 392 (606)
Q Consensus 317 ~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~--~~~~~~~--~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 392 (606)
.|..++ .+..+++.+|..+.+. ++++. ..-.+.. .........-.|.+...........+.+.....
T Consensus 1281 ~ia~q~----~k~ir~v~ls~~lana-----~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~a 1351 (1674)
T KOG0951|consen 1281 YIASQL----EKKIRVVALSSSLANA-----RDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTA 1351 (1674)
T ss_pred HHHHHH----HhheeEEEeehhhccc-----hhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHH
Confidence 666665 4556788888776542 22111 1111111 111111111112222222222222222222111
Q ss_pred HhcccCCCCceEEEEEcchhhHHHHHHHHH----------------------hCCCCcEEeeCccCHHHHHHHHHhccCC
Q 007365 393 VANGVHGKQSLTLVFVETKKGADALEHWLY----------------------MNGFPATTIHGDRTQQERELALRSFKSG 450 (606)
Q Consensus 393 ~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~----------------------~~~~~~~~lhg~~~~~~R~~~l~~F~~g 450 (606)
+... .....+++||++++++|..++.-|- +..++...=|-+++..+...+-..|..|
T Consensus 1352 i~~~-a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g 1430 (1674)
T KOG0951|consen 1352 IVRH-AGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG 1430 (1674)
T ss_pred HHHH-hcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC
Confidence 1111 1236779999999999988875441 1122222238899999999999999999
Q ss_pred CCcEEEEccccccCCCCCCccEEEE-----ec------CCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHH
Q 007365 451 KTPILVATDVAARGLDIPHVAHVVN-----FD------LPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPL 516 (606)
Q Consensus 451 ~~~iLVaT~v~~~GlDip~v~~VI~-----~d------~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l 516 (606)
.+.|+|...- ..|+-... +.||- || .+-.+.+..|++|+|.|+ |.|+++....+..++++.
T Consensus 1431 ~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1431 AIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 9999988755 55665533 33432 22 244689999999999984 789999998887776653
No 157
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.54 E-value=5.6e-12 Score=142.52 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhcc----CCCCcEEEEc
Q 007365 383 SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFK----SGKTPILVAT 458 (606)
Q Consensus 383 ~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~----~g~~~iLVaT 458 (606)
..+.+.+...... .+.+|||++|.+..+.+++.|....-..+.+++. ..+..+++.|+ .++-.||++|
T Consensus 521 ~~~~~~i~~l~~~-----~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~ 592 (697)
T PRK11747 521 AEMAEFLPELLEK-----HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGL 592 (697)
T ss_pred HHHHHHHHHHHhc-----CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEe
Confidence 3455555544431 4458999999999999999987432123455664 35677887776 4677899999
Q ss_pred cccccCCCCCC--ccEEEEecCCC----CH--------------------------hHHHHHhhccccCCCcceEEEEec
Q 007365 459 DVAARGLDIPH--VAHVVNFDLPN----DI--------------------------DDYVHRIGRTGRAGKSGLATAFFN 506 (606)
Q Consensus 459 ~v~~~GlDip~--v~~VI~~d~p~----s~--------------------------~~y~QRiGR~gR~g~~G~~~~~~~ 506 (606)
..+.+|||+|+ +.+||...+|. ++ ..+.|-+||.-|...+--++++++
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 99999999987 78899877764 11 123588999999865433444544
Q ss_pred c
Q 007365 507 E 507 (606)
Q Consensus 507 ~ 507 (606)
.
T Consensus 673 ~ 673 (697)
T PRK11747 673 R 673 (697)
T ss_pred c
Confidence 4
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.54 E-value=5.7e-13 Score=149.41 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=65.6
Q ss_pred EEEEEcchhhHHHHHHHHHhC------CCCcEEeeCccCHHHHHHHHHhc----------------------c----CCC
Q 007365 404 TLVFVETKKGADALEHWLYMN------GFPATTIHGDRTQQERELALRSF----------------------K----SGK 451 (606)
Q Consensus 404 ~LVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~~l~~F----------------------~----~g~ 451 (606)
.||-+++++.+-.++..|... .+.+.+||+..+...|..+.+.. + .+.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 467777777777777776543 24467899998777776655432 1 145
Q ss_pred CcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCC
Q 007365 452 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 497 (606)
Q Consensus 452 ~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~ 497 (606)
..|+|+|.|++.|+|+ +.+++ |.-|.+++..+||.||+.|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~--~~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWA--IADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCee--eeccCcHHHHHHHhhccccccc
Confidence 6799999999999999 33443 3446679999999999999754
No 159
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=6.9e-13 Score=136.26 Aligned_cols=353 Identities=21% Similarity=0.256 Sum_probs=231.6
Q ss_pred CCCCCCHHHHhHHHHHhcCCCEEEEc-cCCCch--hHHhHHHHHHHHHhhhcccCCCC------------------Cccc
Q 007365 161 KYVKPTPVQRHAIPISVAGRDLMACA-QTGSGK--TAAFCFPIISGIMREQYVQRPRG------------------ARTV 219 (606)
Q Consensus 161 ~~~~p~~~Q~~ai~~i~~~~d~li~a-~TGsGK--T~a~llpil~~l~~~~~~~~~~~------------------~~~~ 219 (606)
.-..+|+.|.+.+.++.+.+|++..- ..+.|+ +-.|++.+|+++++.+...-.+. .--.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 44579999999999999999988632 224455 45799999999987543211100 0123
Q ss_pred CcEEEEEccchHHHHHHHHHHHHhhhcCCc-EE--------EEEECCCC--------hHH--------------------
Q 007365 220 YPLALILAPTRELSSQIHDEAKKFSYQTGV-KV--------VVAYGGAP--------INQ-------------------- 262 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~-~~--------~~~~gg~~--------~~~-------------------- 262 (606)
.|+||||||+|+.|-.+...+..+.....- +. .--|++.+ ..+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 589999999999999999888877422211 11 11122210 001
Q ss_pred ---HHHHHh--cCCcEEEecHHHHHHHHHhc------cccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCC---
Q 007365 263 ---QLRELE--RGVDILVATPGRLVDLLERA------RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG--- 328 (606)
Q Consensus 263 ---~~~~l~--~~~~Ilv~Tp~~L~~~l~~~------~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~--- 328 (606)
.++... ...|||||+|=-|.-++.+. .-.|+.+.++|+|-||-|+...| +.+..|+.+|...+..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccC
Confidence 111111 24799999999988888632 12478899999999999887665 5667777777544322
Q ss_pred -----------------CceEEEEeccChHHHHHHHHHhhcCcEEEEecc----------ccCccCceeEEEEEecc---
Q 007365 329 -----------------VRQTMLFSATFPKEIQKLASDFLANYVFLAVGR----------VGSSTDLIVQRVEYVHE--- 378 (606)
Q Consensus 329 -----------------~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~----------~~~~~~~i~~~~~~~~~--- 378 (606)
-+|+|+||+-....+..+...++.+..-....+ .......+.|.+..-..
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 159999999888888888887776643211111 11111112222211111
Q ss_pred -chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEE
Q 007365 379 -SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 457 (606)
Q Consensus 379 -~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 457 (606)
..++....+.+.-.+ ...-..-+|||.++.-.--.+-.++++..+..+.||.-.++..-.++-+-|-.|...||+-
T Consensus 532 ~D~RFkyFv~~ImPq~---~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLy 608 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQL---IKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLY 608 (698)
T ss_pred chHHHHHHHHhhchhh---cccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEE
Confidence 122222222221111 1122455899999998888899999998888888887767777777778899999999999
Q ss_pred cccc--ccCCCCCCccEEEEecCCCCHhHHH---HHhhccccCCC----cceEEEEeccCChhhHHHHH
Q 007365 458 TDVA--ARGLDIPHVAHVVNFDLPNDIDDYV---HRIGRTGRAGK----SGLATAFFNENNLSLARPLA 517 (606)
Q Consensus 458 T~v~--~~GlDip~v~~VI~~d~p~s~~~y~---QRiGR~gR~g~----~G~~~~~~~~~~~~~~~~l~ 517 (606)
|.-+ -+-.+|..|..||.|.+|.++.-|. -+++|+.-.|+ .-.|.++|++.|.-.+..++
T Consensus 609 TER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 609 TERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred ehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 9655 4788999999999999999987764 56666654442 35899999998876665543
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.47 E-value=3.6e-12 Score=149.97 Aligned_cols=120 Identities=20% Similarity=0.289 Sum_probs=104.2
Q ss_pred hhhhHHHHHH-HHHHhcccCCCCc--eEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCC--CCcE
Q 007365 380 DKRSHLMDLL-HAQVANGVHGKQS--LTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG--KTPI 454 (606)
Q Consensus 380 ~k~~~l~~ll-~~~~~~~~~~~~~--~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g--~~~i 454 (606)
.|...+.+++ ...... .. ++|||++.....+.+.++|...++....++|.++..+|..+++.|..+ ...+
T Consensus 692 ~k~~~l~~ll~~~~~~~-----~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ 766 (866)
T COG0553 692 GKLQALDELLLDKLLEE-----GHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVF 766 (866)
T ss_pred hHHHHHHHHHHHHHHhh-----cccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceE
Confidence 5666777777 444433 44 899999999999999999999998899999999999999999999986 4457
Q ss_pred EEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEE
Q 007365 455 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 504 (606)
Q Consensus 455 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~ 504 (606)
|++|.+...||+....++||+||+.|++....|.+.|+.|.|++..+.++
T Consensus 767 lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 767 LLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred EEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 88889999999999999999999999999999999999999997655443
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.41 E-value=2.7e-11 Score=134.69 Aligned_cols=277 Identities=12% Similarity=0.063 Sum_probs=161.3
Q ss_pred cCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHH-
Q 007365 187 QTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLR- 265 (606)
Q Consensus 187 ~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~- 265 (606)
-+|||||.+|+-.+-..+...+ .+|||+|...|..|+.+.++.... ...+.+++.+.+..+..+
T Consensus 168 ~~GSGKTevyl~~i~~~l~~Gk-------------~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRAGR-------------GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHcCC-------------eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHH
Confidence 3699999998877665554332 499999999999999999987642 256777888777554433
Q ss_pred --HHhcC-CcEEEecHHHHHHHHHhccccccceeEEEEecccccccC---CC---HHHHHHHHHhcCCCCCCCceEEEEe
Q 007365 266 --ELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM---GF---EPQIRKIVQQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 266 --~l~~~-~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~---gf---~~~i~~i~~~l~~~~~~~~q~ll~S 336 (606)
.+..+ +.|+|+|-..++ ..+.++.+||+||-|.-.-. .. ..++.....+. ....+|+-|
T Consensus 233 w~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~-----~~~~lvLgS 300 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ-----HGCALLIGG 300 (665)
T ss_pred HHHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH-----cCCcEEEEC
Confidence 33344 789999943332 26889999999999953311 11 12233333332 345689999
Q ss_pred ccChHHHHHHHHHhhcCcEEEEecc--ccCccCceeEEEEEeccc---------h----hhhHHHHHHHHHHhcccCCCC
Q 007365 337 ATFPKEIQKLASDFLANYVFLAVGR--VGSSTDLIVQRVEYVHES---------D----KRSHLMDLLHAQVANGVHGKQ 401 (606)
Q Consensus 337 AT~~~~i~~l~~~~l~~~~~~~~~~--~~~~~~~i~~~~~~~~~~---------~----k~~~l~~ll~~~~~~~~~~~~ 401 (606)
||+.-+....+..- .+..+.... ....... +..++.. . -...+++.+.+.+.. .
T Consensus 301 aTPSles~~~~~~g--~~~~~~~~~~~~~~~~P~----v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~-----g 369 (665)
T PRK14873 301 HARTAEAQALVESG--WAHDLVAPRPVVRARAPR----VRALGDSGLALERDPAARAARLPSLAFRAARDALEH-----G 369 (665)
T ss_pred CCCCHHHHHHHhcC--cceeeccccccccCCCCe----EEEEeCchhhhccccccccCccCHHHHHHHHHHHhc-----C
Confidence 99887766555421 222111111 1111111 1112110 0 112455666666543 4
Q ss_pred ceEEEEEcchhhHHHHHHHHHhCCC------CcEEeeCc-------------------------c------CH-------
Q 007365 402 SLTLVFVETKKGADALEHWLYMNGF------PATTIHGD-------------------------R------TQ------- 437 (606)
Q Consensus 402 ~~~LVF~~s~~~~~~l~~~L~~~~~------~~~~lhg~-------------------------~------~~------- 437 (606)
++|||+|.+-.+-.|...=+..-. ....+|.. + ++
T Consensus 370 -qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~ 448 (665)
T PRK14873 370 -PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELG 448 (665)
T ss_pred -cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHH
Confidence 799999876554433211100000 00001100 0 00
Q ss_pred ----------HHHHHHHHhccCCCCcEEEEcc----ccccCCCCCCccEEEEecCCC------------CHhHHHHHhhc
Q 007365 438 ----------QERELALRSFKSGKTPILVATD----VAARGLDIPHVAHVVNFDLPN------------DIDDYVHRIGR 491 (606)
Q Consensus 438 ----------~~R~~~l~~F~~g~~~iLVaT~----v~~~GlDip~v~~VI~~d~p~------------s~~~y~QRiGR 491 (606)
.+++.+++.|. ++..|||+|. +++ ++++.|+.+|... ....+.|-.||
T Consensus 449 ~~FP~~~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagr 522 (665)
T PRK14873 449 RAFPGVPVVTSGGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAAL 522 (665)
T ss_pred HHCCCCCEEEEChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHh
Confidence 12445778886 4899999999 665 3567776655421 23445789999
Q ss_pred cccCCCcceEEEEeccC
Q 007365 492 TGRAGKSGLATAFFNEN 508 (606)
Q Consensus 492 ~gR~g~~G~~~~~~~~~ 508 (606)
+||....|.+++..+++
T Consensus 523 agr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 523 VRPRADGGQVVVVAESS 539 (665)
T ss_pred hcCCCCCCEEEEEeCCC
Confidence 99998899998876444
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.39 E-value=2.4e-11 Score=131.89 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=99.8
Q ss_pred chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHh----------------------CCCCcEEeeCccC
Q 007365 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYM----------------------NGFPATTIHGDRT 436 (606)
Q Consensus 379 ~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~----------------------~~~~~~~lhg~~~ 436 (606)
+.|.-.|+++|...... ..++|||.++....+.+..+|.. .|.....|.|..+
T Consensus 1125 SgKmiLLleIL~mceeI-----GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~ 1199 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEI-----GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTT 1199 (1567)
T ss_pred CcceehHHHHHHHHHHh-----cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCccc
Confidence 34455566666544333 77899999999999999999853 1456678899999
Q ss_pred HHHHHHHHHhccCCC----CcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEE
Q 007365 437 QQERELALRSFKSGK----TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 504 (606)
Q Consensus 437 ~~~R~~~l~~F~~g~----~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~ 504 (606)
..+|+...+.|..-. .-+||+|.+.+-||++-.++-||+||..||+..-+|-|=|+.|.|++--||++
T Consensus 1200 s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1200 SQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999999999998642 23899999999999999999999999999999999999999999997665544
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.37 E-value=3.1e-11 Score=132.45 Aligned_cols=293 Identities=15% Similarity=0.215 Sum_probs=177.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCC
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAP 259 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~ 259 (606)
.-.+|.+|+|||||.+.+- .+...+... .-.+|+|+-++.|+.++++.++..... ++. .|....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~-wLk~~l~~~-----------~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~ 113 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIR-WLKDALKNP-----------DKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSD 113 (824)
T ss_pred CeEEEECCCCCCcHHHHHH-HHHHhccCC-----------CCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccc
Confidence 4578899999999996443 343332221 124999999999999999998875221 111 122111
Q ss_pred hHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHH---HHHHhcCCCCCCCceEEEEe
Q 007365 260 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR---KIVQQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 260 ~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~---~i~~~l~~~~~~~~q~ll~S 336 (606)
...+. .+..+-|++..+.|..+.. -.+.++++|||||+-..+..-|.+.++ .+++.+.........+|++-
T Consensus 114 -~~~i~--~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~D 187 (824)
T PF02399_consen 114 -DYIID--GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMD 187 (824)
T ss_pred -ccccc--ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEec
Confidence 00110 0124678888888866532 246779999999999776553333222 22222211124556799999
Q ss_pred ccChHHHHHHHHHhhcCc-EEEEeccccCccCceeEEEEEec-----------------------------------cch
Q 007365 337 ATFPKEIQKLASDFLANY-VFLAVGRVGSSTDLIVQRVEYVH-----------------------------------ESD 380 (606)
Q Consensus 337 AT~~~~i~~l~~~~l~~~-~~~~~~~~~~~~~~i~~~~~~~~-----------------------------------~~~ 380 (606)
||+...+-++++.+..+. +.+.+....... .......... ...
T Consensus 188 A~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~-fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (824)
T PF02399_consen 188 ADLNDQTVDFLASCRPDENIHVIVNTYASPG-FSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISN 266 (824)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEEeeeecCC-cccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccccc
Confidence 999999888888865432 322222211100 0000000000 001
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
........|...+.. +.++-||+.|...++.++++.......+..+++..+..+. +.| ++.+|+|=|.+
T Consensus 267 ~~~tF~~~L~~~L~~-----gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~ 335 (824)
T PF02399_consen 267 DETTFFSELLARLNA-----GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPV 335 (824)
T ss_pred chhhHHHHHHHHHhC-----CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEece
Confidence 112344444444433 5567799999999999999999888889999887665532 334 36889999999
Q ss_pred cccCCCCCCccE--EEEe--cCC--CCHhHHHHHhhccccCCCcceEEEEecc
Q 007365 461 AARGLDIPHVAH--VVNF--DLP--NDIDDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 461 ~~~GlDip~v~~--VI~~--d~p--~s~~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
+..|+++....+ |+-| ... .+..+..|++||+-.. .....+++++.
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~ 387 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDA 387 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEec
Confidence 999999976432 4434 222 2455689999999444 45566666654
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.30 E-value=3.2e-11 Score=123.49 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=92.8
Q ss_pred HHHhHHHHHh-------------cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHH
Q 007365 168 VQRHAIPISV-------------AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSS 234 (606)
Q Consensus 168 ~Q~~ai~~i~-------------~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~ 234 (606)
+|.+++.+++ ..+.+|++.++|+|||++.+..+. .+....... ..-.+|||||. .+..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~-------~~~~~LIv~P~-~l~~ 71 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQR-------GEKKTLIVVPS-SLLS 71 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTS-------S-S-EEEEE-T-TTHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccc-------cccceeEeecc-chhh
Confidence 5788887652 336789999999999997655443 333322111 01139999999 8889
Q ss_pred HHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHH---hccccccceeEEEEecccccccCCC
Q 007365 235 QIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE---RARVSLQMIRYLALDEADRMLDMGF 311 (606)
Q Consensus 235 Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~---~~~~~l~~~~~lVlDEah~~~~~gf 311 (606)
||..++.++.....+++.++.+...............+|+|+|++.+..... ...+.-..+++||+||+|.+.+..
T Consensus 72 ~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~- 150 (299)
T PF00176_consen 72 QWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD- 150 (299)
T ss_dssp HHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-
T ss_pred hhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-
Confidence 9999999998655667766555541222222233457899999999991100 011122348999999999985443
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEeccC
Q 007365 312 EPQIRKIVQQMDMPPPGVRQTMLFSATF 339 (606)
Q Consensus 312 ~~~i~~i~~~l~~~~~~~~q~ll~SAT~ 339 (606)
......+..+. ...++++|||+
T Consensus 151 -s~~~~~l~~l~-----~~~~~lLSgTP 172 (299)
T PF00176_consen 151 -SKRYKALRKLR-----ARYRWLLSGTP 172 (299)
T ss_dssp -SHHHHHHHCCC-----ECEEEEE-SS-
T ss_pred -ccccccccccc-----cceEEeecccc
Confidence 34444444452 45689999996
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.24 E-value=1.6e-09 Score=125.89 Aligned_cols=286 Identities=18% Similarity=0.195 Sum_probs=157.3
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCC
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAP 259 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~ 259 (606)
+..+|.--||||||++.+.. ...+... ...|.++||+-+++|-.|+.+++..+........ .-.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~-A~~l~~~----------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s 338 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL-ARLLLEL----------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAES 338 (962)
T ss_pred CceEEEeecCCchHHHHHHH-HHHHHhc----------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccC
Confidence 46899999999999974433 2333332 2246799999999999999999999864432211 2334
Q ss_pred hHHHHHHHhcC-CcEEEecHHHHHHHHHhcc--ccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q 007365 260 INQQLRELERG-VDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 260 ~~~~~~~l~~~-~~Ilv~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~S 336 (606)
..+-...+... -.|+|+|-+.|-..+.... ..-..--+||+|||||-- +...-..+-..+ +....++||
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-----~~a~~~gFT 410 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-----KKAIFIGFT 410 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-----ccceEEEee
Confidence 34444445544 3799999999988876541 111222379999999842 222223333333 225689999
Q ss_pred ccChHH-----HHHHHHHhhcCcEEEEeccccCccCceeEEEEEe------ccch-------------------------
Q 007365 337 ATFPKE-----IQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYV------HESD------------------------- 380 (606)
Q Consensus 337 AT~~~~-----i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~------------------------- 380 (606)
.|+-.. .......+++.|............ ...+... ....
T Consensus 411 GTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl---~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 487 (962)
T COG0610 411 GTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVL---PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKK 487 (962)
T ss_pred CCccccccccchhhhhcceeEEEecchhhccCcee---eEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHH
Confidence 996221 123333333332221111111111 0001000 0000
Q ss_pred ------------hh-hHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-------------------CC--
Q 007365 381 ------------KR-SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-------------------GF-- 426 (606)
Q Consensus 381 ------------k~-~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-------------------~~-- 426 (606)
+. ....++..... . ......++.|.|.++..+..+.+..... .+
T Consensus 488 ~~~~~~~~~~~~r~~~~a~~i~~~f~-~-~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 565 (962)
T COG0610 488 TKNLEFLAMLAVRLIRAAKDIYDHFK-K-EEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFET 565 (962)
T ss_pred HhhhhHHhcchHHHHHHHHHHHHHHH-h-hcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhccc
Confidence 00 00111111111 1 1233556676676666444444332111 00
Q ss_pred --CcEEeeCccCHHHHHHHHHh--ccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccC
Q 007365 427 --PATTIHGDRTQQERELALRS--FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495 (606)
Q Consensus 427 --~~~~lhg~~~~~~R~~~l~~--F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~ 495 (606)
.....|.. ....+.....+ .+....+|||.++++-+|.|.|.+++ +-+|-|.---..+|.+-||.|.
T Consensus 566 ~~~~~~~~~~-~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 566 DFDKKQSHAK-LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred chhhhhhhHH-HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccC
Confidence 00001222 22333444455 34567889999999999999998764 4567777778899999999995
No 166
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.21 E-value=5.5e-10 Score=123.60 Aligned_cols=321 Identities=17% Similarity=0.202 Sum_probs=201.0
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
++|+-.+.+-.+.-+..-++.+.||-|||+++.+|+.-..+..+ -+.|+...--||.--++++.++.
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk-------------gVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK-------------GVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC-------------CcEEeeehHHhhhhCHHHHHHHH
Confidence 44555555655666677889999999999999999876555433 17888888999999999999999
Q ss_pred hcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhc------cccccceeEEEEecccccc-cC-------
Q 007365 245 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DM------- 309 (606)
Q Consensus 245 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~------- 309 (606)
...++.+.+...+.+..+.... ..|||.++|-..| .+.|... ......+.+.|+||+|-++ |.
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiI 223 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLII 223 (822)
T ss_pred HHcCCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceee
Confidence 9999999998888865544333 3499999998776 2222211 1124457889999999654 21
Q ss_pred -C---C----HHHHHHHHHhcCCCC----CCC-c----------------------------------------------
Q 007365 310 -G---F----EPQIRKIVQQMDMPP----PGV-R---------------------------------------------- 330 (606)
Q Consensus 310 -g---f----~~~i~~i~~~l~~~~----~~~-~---------------------------------------------- 330 (606)
| . ...+..++..+.... ... +
T Consensus 224 SG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D 303 (822)
T COG0653 224 SGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRD 303 (822)
T ss_pred ecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcC
Confidence 1 1 222223332221110 000 0
Q ss_pred --------eEEE------------------------------------------------------EeccChHHHHHHHH
Q 007365 331 --------QTML------------------------------------------------------FSATFPKEIQKLAS 348 (606)
Q Consensus 331 --------q~ll------------------------------------------------------~SAT~~~~i~~l~~ 348 (606)
.+++ |+.|...+...+..
T Consensus 304 ~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~ 383 (822)
T COG0653 304 VDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDV 383 (822)
T ss_pred CeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhh
Confidence 1111 11111111111111
Q ss_pred HhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCc
Q 007365 349 DFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPA 428 (606)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~ 428 (606)
.|..+.+. +.........-.....+.....|...+++.+...... .+|+||-+.+++..+.+.+.|.+.+++.
T Consensus 384 iY~l~vv~--iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~-----gqPvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 384 IYGLDVVV--IPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEK-----GQPVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred ccCCceee--ccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhc-----CCCEEEcCcceecchhHHHHHHhcCCCc
Confidence 11111111 1111111111112234455677888888888777554 8899999999999999999999999999
Q ss_pred EEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCcc-----------EEEEecCCCCHhHHHHHhhccccCCC
Q 007365 429 TTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVA-----------HVVNFDLPNDIDDYVHRIGRTGRAGK 497 (606)
Q Consensus 429 ~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~-----------~VI~~d~p~s~~~y~QRiGR~gR~g~ 497 (606)
..|...-. .|+.-+-.+.--.-.|-|||++|.||-||.--. +||--..-.|-.---|-.||+||.|-
T Consensus 457 ~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 457 NVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred eeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 88887654 333333333322234889999999999994322 45555555555556699999999999
Q ss_pred cceEEEEeccCC
Q 007365 498 SGLATAFFNENN 509 (606)
Q Consensus 498 ~G~~~~~~~~~~ 509 (606)
+|.+-.|++-+|
T Consensus 535 pG~S~F~lSleD 546 (822)
T COG0653 535 PGSSRFYLSLED 546 (822)
T ss_pred cchhhhhhhhHH
Confidence 998888877544
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.20 E-value=8.3e-11 Score=103.31 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=80.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCC
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGA 258 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~ 258 (606)
++-.++-..+|+|||.-.+--++...++.+ .++|||.|||.++..+++.++.. .+++.. .-.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~------------~rvLvL~PTRvva~em~~aL~~~----~~~~~t--~~~ 65 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRR------------LRVLVLAPTRVVAEEMYEALKGL----PVRFHT--NAR 65 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--------------EEEEESSHHHHHHHHHHTTTS----SEEEES--TTS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHcc------------CeEEEecccHHHHHHHHHHHhcC----CcccCc--eee
Confidence 445678889999999965555554444332 35999999999999888888753 333221 100
Q ss_pred ChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 259 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 259 ~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
. . ....+.-|-|+|+..+...+.+ ...+.++++||+||||-+-... -..+..+..+.. .....+|++|||
T Consensus 66 ~--~---~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~--~g~~~~i~mTAT 135 (148)
T PF07652_consen 66 M--R---THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAE--SGEAKVIFMTAT 135 (148)
T ss_dssp S---------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHH--TTS-EEEEEESS
T ss_pred e--c---cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhh--ccCeeEEEEeCC
Confidence 0 0 1123456889999999888876 5568899999999999632211 111222222210 233569999999
Q ss_pred ChHHH
Q 007365 339 FPKEI 343 (606)
Q Consensus 339 ~~~~i 343 (606)
+|...
T Consensus 136 PPG~~ 140 (148)
T PF07652_consen 136 PPGSE 140 (148)
T ss_dssp -TT--
T ss_pred CCCCC
Confidence 98754
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.10 E-value=1.3e-09 Score=110.53 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=56.9
Q ss_pred CCCHHHHhHH----HHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 164 KPTPVQRHAI----PISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai----~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
+|+|.|.+.+ ..+..+.++|+.||||+|||+++++|++..+....... ...+++|+++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------cccceeEEeccHHHHHHHHHH
Confidence 4699999954 45666899999999999999999999998766433210 112499999999999998877
Q ss_pred HHHh
Q 007365 240 AKKF 243 (606)
Q Consensus 240 ~~~~ 243 (606)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7765
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.10 E-value=1.3e-09 Score=110.53 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=56.9
Q ss_pred CCCHHHHhHH----HHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007365 164 KPTPVQRHAI----PISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai----~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
+|+|.|.+.+ ..+..+.++|+.||||+|||+++++|++..+....... ...+++|+++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------cccceeEEeccHHHHHHHHHH
Confidence 4699999954 45666899999999999999999999998766433210 112499999999999998877
Q ss_pred HHHh
Q 007365 240 AKKF 243 (606)
Q Consensus 240 ~~~~ 243 (606)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7765
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.00 E-value=1.3e-07 Score=107.23 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=57.1
Q ss_pred CCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccC--CCcc--------eEEEEeccCChhhHHHHHHHH
Q 007365 451 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA--GKSG--------LATAFFNENNLSLARPLAELM 520 (606)
Q Consensus 451 ~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~--g~~G--------~~~~~~~~~~~~~~~~l~~~l 520 (606)
..++|++-.++.+|.|.|+|-.+.-+....|...-.|-+||..|. .+.| .-.++.+.....++..|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 577999999999999999999998999888889999999999993 1222 234445566677888877666
Q ss_pred HHh
Q 007365 521 QES 523 (606)
Q Consensus 521 ~~~ 523 (606)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 543
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.92 E-value=2.4e-08 Score=98.74 Aligned_cols=129 Identities=20% Similarity=0.251 Sum_probs=95.4
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
-..|+++|.-++-.++.|+ |+.+.||-|||++..+|++...+..+ .|-|++.+..||..=++++.
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~-------------~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK-------------GVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS--------------EEEEESSHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC-------------CcEEEeccHHHhhccHHHHH
Confidence 3478899988887776655 99999999999998888876665543 38899999999999999999
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHH-HHHHhc----cc--cccceeEEEEecccccc
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLV-DLLERA----RV--SLQMIRYLALDEADRML 307 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~-~~l~~~----~~--~l~~~~~lVlDEah~~~ 307 (606)
.|....++.+.+++.+.+..+.... ..++|+++|...|. +.|... .. ....+.++|+||+|.|+
T Consensus 140 ~~y~~LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 140 PFYEFLGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHTT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHhhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999988875433222 34799999999885 444331 11 24678899999999765
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.82 E-value=1.3e-07 Score=107.36 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=48.5
Q ss_pred CCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 270 GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 270 ~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
...|+++||..|..-|..+.+++..|..||+||||++....-+..|.+++..- .+..-+.+|||.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~----n~~gfIkafSds 71 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQK----NKTGFIKAFSDN 71 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHh----CCCcceEEecCC
Confidence 35799999999998888888999999999999999987655455555555443 223345666665
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.65 E-value=2.3e-06 Score=93.81 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=56.9
Q ss_pred CCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhcccc--CCCcceE-----------EEEeccCChhhHHHHH
Q 007365 451 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR--AGKSGLA-----------TAFFNENNLSLARPLA 517 (606)
Q Consensus 451 ~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR--~g~~G~~-----------~~~~~~~~~~~~~~l~ 517 (606)
..++|++-.++-+|.|-|+|=.++-+....|..+=+|-+||..| +.+.|.- .+|++.....+++.|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999 3334433 3455667777777776
Q ss_pred HHHH
Q 007365 518 ELMQ 521 (606)
Q Consensus 518 ~~l~ 521 (606)
+-+.
T Consensus 563 kEI~ 566 (985)
T COG3587 563 KEIN 566 (985)
T ss_pred HHHH
Confidence 5443
No 174
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.64 E-value=2e-07 Score=103.51 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=92.0
Q ss_pred ceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCc--EEEEccccccCCCCCCccEEEEecCC
Q 007365 402 SLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP--ILVATDVAARGLDIPHVAHVVNFDLP 479 (606)
Q Consensus 402 ~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~--iLVaT~v~~~GlDip~v~~VI~~d~p 479 (606)
.++|||++-...++.+...|...++....+.|.|+...|.+++..|..+... .|++..+...|+++..+.|||.+|+.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 3899999999999999999998899999999999999999999999965332 56788999999999999999999999
Q ss_pred CCHhHHHHHhhccccCCCcceEEE
Q 007365 480 NDIDDYVHRIGRTGRAGKSGLATA 503 (606)
Q Consensus 480 ~s~~~y~QRiGR~gR~g~~G~~~~ 503 (606)
||+...-|.|-|+.|.|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999766544
No 175
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.57 E-value=1.6e-06 Score=93.42 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=88.4
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCC------------------CcEEeeCccCHHHHHHHHHhccCCC---CcEEEEcc
Q 007365 401 QSLTLVFVETKKGADALEHWLYMNGF------------------PATTIHGDRTQQERELALRSFKSGK---TPILVATD 459 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~------------------~~~~lhg~~~~~~R~~~l~~F~~g~---~~iLVaT~ 459 (606)
+.++|||....-..+.+.+.|....+ ..+.+.|..+..+|++.++.|.+-- .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45799999999999999999865422 3345678888899999999998642 24899999
Q ss_pred ccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEe
Q 007365 460 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 505 (606)
Q Consensus 460 v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~ 505 (606)
...-||++-..+-+|.||.-|++-.-.|.+-|+.|-|++..|+++-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999999999999999999999999999999999987777654
No 176
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.33 E-value=1.3e-05 Score=85.59 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=66.6
Q ss_pred HHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHH
Q 007365 155 LNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSS 234 (606)
Q Consensus 155 ~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~ 234 (606)
+.+...++.+++.-|..|+..++...-.||++|.|+|||.+-.. |+.++.+... -.+||++|+..-+.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~~~-----------~~VLvcApSNiAVD 468 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQHA-----------GPVLVCAPSNIAVD 468 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHhcC-----------CceEEEcccchhHH
Confidence 34555677889999999999999999999999999999987444 4444444321 12999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEEE
Q 007365 235 QIHDEAKKFSYQTGVKVVVAY 255 (606)
Q Consensus 235 Qi~~~~~~~~~~~~~~~~~~~ 255 (606)
|+++.+.+- +++++-+.
T Consensus 469 qLaeKIh~t----gLKVvRl~ 485 (935)
T KOG1802|consen 469 QLAEKIHKT----GLKVVRLC 485 (935)
T ss_pred HHHHHHHhc----CceEeeee
Confidence 999998874 67776543
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.31 E-value=2e-07 Score=103.86 Aligned_cols=145 Identities=23% Similarity=0.324 Sum_probs=105.0
Q ss_pred CCCHHHHhHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVA-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~-~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
...|+|.+.+..+.. ..++++-+|||+|||++|.++++..+..... .++++++|-..|+..-.+...+
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-----------~kvvyIap~kalvker~~Dw~~ 995 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-----------SKVVYIAPDKALVKERSDDWSK 995 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-----------ccEEEEcCCchhhcccccchhh
Confidence 455677776654433 4788999999999999999988765544321 2499999999999887777766
Q ss_pred hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHH--hccccccceeEEEEecccccccCCCHHHHHHHHH
Q 007365 243 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE--RARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 320 (606)
Q Consensus 243 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~--~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~ 320 (606)
.....+++++-+.|....+ ...+ ...+|+|+||++...... .....+.+++.+|+||.|.+.+ +..+.++.|..
T Consensus 996 r~~~~g~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivs 1071 (1230)
T KOG0952|consen 996 RDELPGIKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVS 1071 (1230)
T ss_pred hcccCCceeEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEee
Confidence 5555589999888877544 1122 247999999999988776 3344688999999999997654 34566555554
Q ss_pred hcC
Q 007365 321 QMD 323 (606)
Q Consensus 321 ~l~ 323 (606)
...
T Consensus 1072 r~n 1074 (1230)
T KOG0952|consen 1072 RMN 1074 (1230)
T ss_pred ccc
Confidence 443
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.27 E-value=4.2e-06 Score=82.06 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=50.1
Q ss_pred CCCHHHHhHHHHHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVAGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d-~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
++++-|.+||..++.... .+|.+|.|||||.+ +..++..+.+.... ........+||++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~----~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKS----RSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhh----hhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999988 99999999999975 33444444211000 0011233599999999999999999888
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.26 E-value=7.4e-06 Score=81.42 Aligned_cols=180 Identities=17% Similarity=0.190 Sum_probs=109.0
Q ss_pred CCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhc----------CCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007365 137 VPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVA----------GRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 137 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~----------~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
+++|..+ ..+.|++.+... ..+...|-++|-...+ ....++-..||.||--+..-.|++.+++
T Consensus 17 v~~P~~~-y~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~ 89 (303)
T PF13872_consen 17 VAPPDPT-YRLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR 89 (303)
T ss_pred CCCCCCC-cccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc
Confidence 3444433 445677755432 2478899998865432 2567888899999998766667777765
Q ss_pred hhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHH
Q 007365 207 EQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE 286 (606)
Q Consensus 207 ~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~ 286 (606)
.. .++|.++.+..|.....+.++.+... .+.+..+..-. .. .. ..-.-.||++|+..|...-.
T Consensus 90 Gr------------~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~-~~--~~~~~GvlF~TYs~L~~~~~ 152 (303)
T PF13872_consen 90 GR------------KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YG-DI--IRLKEGVLFSTYSTLISESQ 152 (303)
T ss_pred CC------------CceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cC-cC--CCCCCCccchhHHHHHhHHh
Confidence 43 13899999999999988888876433 23332221100 00 00 11134699999999877643
Q ss_pred hc---cccc--------cc-eeEEEEecccccccCCCH--------HHHHHHHHhcCCCCCCCceEEEEeccChHHHHH
Q 007365 287 RA---RVSL--------QM-IRYLALDEADRMLDMGFE--------PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQK 345 (606)
Q Consensus 287 ~~---~~~l--------~~-~~~lVlDEah~~~~~gf~--------~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~ 345 (606)
.. ...| .+ -.+|||||||.+.+..-. ..+..+-+.+ |.. +++.+|||...+...
T Consensus 153 ~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L----P~A-RvvY~SATgasep~N 226 (303)
T PF13872_consen 153 SGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL----PNA-RVVYASATGASEPRN 226 (303)
T ss_pred ccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC----CCC-cEEEecccccCCCce
Confidence 21 0011 11 247999999998765321 2333344444 444 489999997665443
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.22 E-value=4.7e-06 Score=79.24 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=41.1
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHH
Q 007365 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTREL 232 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~L 232 (606)
...+..|+.++.+++...-+++.++.|||||+.++..+++.+..... -+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~-----------~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEY-----------DKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------------SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC-----------cEEEEEecCCCC
Confidence 35688999999999988899999999999999988888887765322 238888887653
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.22 E-value=6.5e-06 Score=78.69 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
++++-|++++..++.. +-++++++.|+|||++ +..+...+.... ..+++++||...+..+.+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~g------------~~v~~~apT~~Aa~~L~~~~~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAAG------------KRVIGLAPTNKAAKELREKTG 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHTT--------------EEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhCC------------CeEEEECCcHHHHHHHHHhhC
Confidence 3788999999998765 3578889999999984 333444333321 249999999998887655521
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc----cccceeEEEEecccccccCCCHHHHHH
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV----SLQMIRYLALDEADRMLDMGFEPQIRK 317 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~----~l~~~~~lVlDEah~~~~~gf~~~i~~ 317 (606)
+-..|...++........ .+...++||+|||-.+.. ..+..
T Consensus 68 -------------------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ 112 (196)
T PF13604_consen 68 -------------------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLAR 112 (196)
T ss_dssp -------------------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHH
T ss_pred -------------------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHH
Confidence 112333333222221111 155667999999996543 56777
Q ss_pred HHHhcCCCCCCCceEEEEecc
Q 007365 318 IVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 318 i~~~l~~~~~~~~q~ll~SAT 338 (606)
++..+. ....++|++--+
T Consensus 113 ll~~~~---~~~~klilvGD~ 130 (196)
T PF13604_consen 113 LLRLAK---KSGAKLILVGDP 130 (196)
T ss_dssp HHHHS----T-T-EEEEEE-T
T ss_pred HHHHHH---hcCCEEEEECCc
Confidence 777773 224556665444
No 182
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.20 E-value=4.2e-06 Score=77.87 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=72.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCC--CcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc--ccccCCCCCC--ccEEE
Q 007365 401 QSLTLVFVETKKGADALEHWLYMNGF--PATTIHGDRTQQERELALRSFKSGKTPILVATD--VAARGLDIPH--VAHVV 474 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~--v~~~GlDip~--v~~VI 474 (606)
.+.+|||++|.+.++.+.+.|..... ....+.. ...++..+++.|+.+.-.||+++. .+.+|||+|+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 67899999999999999999876531 1223332 356888999999999999999998 9999999996 77899
Q ss_pred EecCCC----CH--------------------------hHHHHHhhccccCCCcceEEEEecc
Q 007365 475 NFDLPN----DI--------------------------DDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 475 ~~d~p~----s~--------------------------~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
...+|. ++ ....|.+||+-|..++--++++++.
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 988874 11 1124889999998665444555544
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.16 E-value=4.2e-05 Score=73.40 Aligned_cols=152 Identities=20% Similarity=0.309 Sum_probs=96.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhc---CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCccc
Q 007365 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVA---GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTV 219 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~---~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 219 (606)
+|.....++.|+-.+... .-+++.|.+....+.+ +.+.+.++-+|.|||.+ ++|++..++....
T Consensus 4 ~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~---------- 70 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS---------- 70 (229)
T ss_pred CCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC----------
Confidence 466666677776555432 3589999999988776 47899999999999996 8899988876532
Q ss_pred CcEEEEEccchHHHHHHHHHHHHh-hhcCCcEEEEE--ECCCChH----HHHH----HHhcCCcEEEecHHHHHHHHHhc
Q 007365 220 YPLALILAPTRELSSQIHDEAKKF-SYQTGVKVVVA--YGGAPIN----QQLR----ELERGVDILVATPGRLVDLLERA 288 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~-~~~~~~~~~~~--~gg~~~~----~~~~----~l~~~~~Ilv~Tp~~L~~~l~~~ 288 (606)
..+.+++| +.|..|.++.+..- ..-.+-++..+ .-..... ..+. ...+.-.|+++||+.++.+.-..
T Consensus 71 -~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~ 148 (229)
T PF12340_consen 71 -RLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKG 148 (229)
T ss_pred -cEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHH
Confidence 24777788 56999988887753 32223333222 2222211 1122 22234579999999886543111
Q ss_pred -------c-----------ccccceeEEEEecccccccC
Q 007365 289 -------R-----------VSLQMIRYLALDEADRMLDM 309 (606)
Q Consensus 289 -------~-----------~~l~~~~~lVlDEah~~~~~ 309 (606)
. ..+.....=|+||+|.++..
T Consensus 149 le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 149 LERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 0 01233445799999987764
No 184
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.97 E-value=4.1e-05 Score=84.75 Aligned_cols=142 Identities=23% Similarity=0.277 Sum_probs=90.2
Q ss_pred CCCHHHHhHHHHHhc----CCCEEEEccCCCchhHHhHHHHHHHHHhhhcc--------cC-------C-----------
Q 007365 164 KPTPVQRHAIPISVA----GRDLMACAQTGSGKTAAFCFPIISGIMREQYV--------QR-------P----------- 213 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~----~~d~li~a~TGsGKT~a~llpil~~l~~~~~~--------~~-------~----------- 213 (606)
+|++.|...+..++. ..+.++..|||+|||++.|-..|+.....+.. .+ +
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 689999887765544 57899999999999997554444333222100 00 0
Q ss_pred ---CCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCC--------------C-----------------
Q 007365 214 ---RGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGA--------------P----------------- 259 (606)
Q Consensus 214 ---~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~--------------~----------------- 259 (606)
...+..-|++.+-+-|-.-..|+.+++++..+. ++.+++-.-. .
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 000122578888888888899999999997665 3332221100 0
Q ss_pred -------------------hH--------------HHHHHHhcCCcEEEecHHHHHHHHHhcc--ccccceeEEEEeccc
Q 007365 260 -------------------IN--------------QQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEAD 304 (606)
Q Consensus 260 -------------------~~--------------~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah 304 (606)
+. ...+.+...++||+|-+..|++-.-+.. ++|++ ++|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 00 0113344468999999999998877655 45543 479999999
Q ss_pred cccc
Q 007365 305 RMLD 308 (606)
Q Consensus 305 ~~~~ 308 (606)
.|.+
T Consensus 258 NiEd 261 (945)
T KOG1132|consen 258 NIED 261 (945)
T ss_pred cHHH
Confidence 8754
No 185
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.89 E-value=0.00014 Score=80.63 Aligned_cols=142 Identities=16% Similarity=0.222 Sum_probs=87.1
Q ss_pred CHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhh
Q 007365 166 TPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSY 245 (606)
Q Consensus 166 ~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~ 245 (606)
.+.|+.|+..++.++-++|.+..|+|||++ +..++..+.+.... ...+++++++||-.-|..+.+.+.....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~-------~~~~~I~l~APTGkAA~rL~e~~~~~~~ 218 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK-------QGKLRIALAAPTGKAAARLAESLRKAVK 218 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc-------cCCCcEEEECCcHHHHHHHHHHHHhhhc
Confidence 379999999999999999999999999985 33444444332110 0023599999999988888877765322
Q ss_pred cCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh------ccccccceeEEEEecccccccCCCHHHHHHHH
Q 007365 246 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319 (606)
Q Consensus 246 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~------~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~ 319 (606)
..... . .+.....+-..|..+|+..... ...+...+++||+|||-++ + .+.+..++
T Consensus 219 ~l~~~----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll 280 (586)
T TIGR01447 219 NLAAA----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLL 280 (586)
T ss_pred ccccc----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHH
Confidence 11110 0 0111112234555555443221 1112345789999999853 3 35677777
Q ss_pred HhcCCCCCCCceEEEEec
Q 007365 320 QQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 320 ~~l~~~~~~~~q~ll~SA 337 (606)
..+ +...++|++--
T Consensus 281 ~al----~~~~rlIlvGD 294 (586)
T TIGR01447 281 KAL----PPNTKLILLGD 294 (586)
T ss_pred Hhc----CCCCEEEEECC
Confidence 777 55667776643
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.87 E-value=0.00012 Score=81.41 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=86.7
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
..++|++|+...+..+-++|.+++|+|||++ +..++..+.+... .....+++++||..-|..+.+.+....
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~--------~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD--------GERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC--------CCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 3589999999999999999999999999985 3334444433211 012358999999999998888776533
Q ss_pred hcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh------ccccccceeEEEEecccccccCCCHHHHHHH
Q 007365 245 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKI 318 (606)
Q Consensus 245 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~------~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i 318 (606)
....+. . .+......-..|-.+|+..... ...+.-.+++||+||+-++ + .+.+..+
T Consensus 224 ~~~~~~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~l 285 (615)
T PRK10875 224 RQLPLT-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARL 285 (615)
T ss_pred hccccc-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHH
Confidence 221110 0 0001111223454444432211 1112345689999999853 3 3566677
Q ss_pred HHhcCCCCCCCceEEEEecc
Q 007365 319 VQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 319 ~~~l~~~~~~~~q~ll~SAT 338 (606)
+..+ ++..++|++--.
T Consensus 286 l~al----~~~~rlIlvGD~ 301 (615)
T PRK10875 286 IDAL----PPHARVIFLGDR 301 (615)
T ss_pred HHhc----ccCCEEEEecch
Confidence 7776 556677776443
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.83 E-value=0.00035 Score=68.51 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=44.4
Q ss_pred CCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchH
Q 007365 161 KYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRE 231 (606)
Q Consensus 161 ~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~ 231 (606)
++...+..|...+.++.....+++.+++|||||+.++..+++.++... .-+++|+=|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-----------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----------eeEEEEeCCCCC
Confidence 345678899999999988888999999999999977766665554322 123677767654
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.82 E-value=8e-05 Score=78.11 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=67.8
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCCh
Q 007365 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~ 260 (606)
.+||.+..|||||+.++ -++..+... ..+..++++++...|...+++.+..-. ..
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~----------~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~~---- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNS----------EEGKKVLYLCGNHPLRNKLREQLAKKY----------NP---- 57 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhcc----------ccCCceEEEEecchHHHHHHHHHhhhc----------cc----
Confidence 47899999999999643 333333111 112348999999999998888877632 00
Q ss_pred HHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCC-------CHHHHHHHHHh
Q 007365 261 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-------FEPQIRKIVQQ 321 (606)
Q Consensus 261 ~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g-------f~~~i~~i~~~ 321 (606)
......+..+..+...+.........+++||+||||+|.+.. ...+|..++..
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001233444555544433223356789999999999998832 24566666654
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.75 E-value=0.00029 Score=80.51 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=47.8
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
..+++-|++|+..+..++-+++.+..|+|||++ +-.++..+..... ...+++++||-.-|..+.+
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~~----------~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELGG----------LLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcCC----------CceEEEEeCchHHHHHHHH
Confidence 479999999999999999999999999999984 3334433322210 0238889999888775543
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.74 E-value=0.00025 Score=79.73 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=53.4
Q ss_pred CCCCHHHHhHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~-~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
..+++.|++|+..++.. ..++|.+|+|+|||.+. ..++..+.+.. .++||++||..-+.++.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~g------------~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKRG------------LRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHcC------------CCEEEEcCcHHHHHHHHHHHH
Confidence 35799999999998876 67889999999999864 44444444321 249999999999999998887
Q ss_pred Hh
Q 007365 242 KF 243 (606)
Q Consensus 242 ~~ 243 (606)
..
T Consensus 223 ~~ 224 (637)
T TIGR00376 223 LC 224 (637)
T ss_pred hC
Confidence 63
No 191
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.74 E-value=0.0015 Score=76.18 Aligned_cols=124 Identities=16% Similarity=0.083 Sum_probs=74.8
Q ss_pred CCCHHHHhHHHHHhcCC-CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVAGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~-d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
.+++-|++||..++..+ -+++.+..|+|||++ +-.++. +.+.. +..++.++||-..|..+.+.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~-~~e~~-----------G~~V~~~ApTGkAA~~L~e~--- 409 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVARE-AWEAA-----------GYEVRGAALSGIAAENLEGG--- 409 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHH-HHHHc-----------CCeEEEecCcHHHHHHHhhc---
Confidence 68999999999988864 478899999999985 333333 33221 23599999998766554321
Q ss_pred hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhc
Q 007365 243 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 243 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
.++.. .|..+|+.-.......+...++|||||+-++.. .++..++...
T Consensus 410 ----tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a 457 (988)
T PRK13889 410 ----SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHA 457 (988)
T ss_pred ----cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhh
Confidence 12211 122223221122233466778999999996543 3555555543
Q ss_pred CCCCCCCceEEEEecc
Q 007365 323 DMPPPGVRQTMLFSAT 338 (606)
Q Consensus 323 ~~~~~~~~q~ll~SAT 338 (606)
. +...++||+--+
T Consensus 458 ~---~~garvVLVGD~ 470 (988)
T PRK13889 458 A---DAGAKVVLVGDP 470 (988)
T ss_pred h---hCCCEEEEECCH
Confidence 2 234566665444
No 192
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.00021 Score=75.93 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=77.3
Q ss_pred EEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH-hhhcCCcEEEEEECCCChH-
Q 007365 184 ACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK-FSYQTGVKVVVAYGGAPIN- 261 (606)
Q Consensus 184 i~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~-~~~~~~~~~~~~~gg~~~~- 261 (606)
..++||||||++..-.||..+.+.-. ..|+.+.....++.....+.. .....-..-.+.+++..+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr------------~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~i 69 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR------------NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEI 69 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh------------hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeee
Confidence 45789999999866666655543321 156665544433332221110 0000000111112222111
Q ss_pred ---HHHHHHhcCCcEEEecHHHHHHHHHhcc---c---ccccee-EEEEecccccccCC---------CHHHHHHHHHhc
Q 007365 262 ---QQLRELERGVDILVATPGRLVDLLERAR---V---SLQMIR-YLALDEADRMLDMG---------FEPQIRKIVQQM 322 (606)
Q Consensus 262 ---~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~---~---~l~~~~-~lVlDEah~~~~~g---------f~~~i~~i~~~l 322 (606)
........+..|+++|.+.|...+.+.+ + ++.+.. +++-||||++-... -...++..+..-
T Consensus 70 kkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la 149 (812)
T COG3421 70 KKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA 149 (812)
T ss_pred eeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH
Confidence 0111123357899999999987775543 2 233333 46679999975421 111222222211
Q ss_pred CCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEe
Q 007365 323 DMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359 (606)
Q Consensus 323 ~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~ 359 (606)
. ...++--++.+|||+|.+ ..+... ..+.+++..
T Consensus 150 ~-~~nkd~~~lef~at~~k~-k~v~~k-y~dkiv~~y 183 (812)
T COG3421 150 L-EQNKDNLLLEFSATIPKE-KSVEDK-YEDKIVVTY 183 (812)
T ss_pred H-hcCCCceeehhhhcCCcc-ccHHHH-hccceEEee
Confidence 1 112344578899999954 233333 344444444
No 193
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.64 E-value=0.0002 Score=76.54 Aligned_cols=65 Identities=23% Similarity=0.430 Sum_probs=51.0
Q ss_pred CCCHHHHhHHHHHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVAGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d-~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
.+.+-|+.|+......++ .++.+|+|+|||.+.. -|+.++++.+ .++||++||.+-+..|.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tlv-EiI~qlvk~~------------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLV-EIISQLVKQK------------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHH-HHHHHHHHcC------------CeEEEEcCchHHHHHHHHHhc
Confidence 478899999999888854 6779999999999744 4455555443 249999999999999988644
No 194
>PF13245 AAA_19: Part of AAA domain
Probab=97.61 E-value=0.00026 Score=56.25 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=39.4
Q ss_pred HHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHH
Q 007365 172 AIPISVA-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 240 (606)
Q Consensus 172 ai~~i~~-~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~ 240 (606)
+|...+. +.-++|.++.|||||.+.+-. +..+...... . +..+||++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~-i~~l~~~~~~-------~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAAR-IAELLAARAD-------P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHH-HHHHHHHhcC-------C-CCeEEEECCCHHHHHHHHHHH
Confidence 4543333 455666999999999764444 4444422100 1 224999999999999988887
No 195
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.43 E-value=0.011 Score=69.77 Aligned_cols=125 Identities=17% Similarity=0.115 Sum_probs=75.3
Q ss_pred CCCCHHHHhHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVA-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~-~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
..+++-|++|+..+.. ++-+++.+..|+|||++ +-++...+... +..++.++||-.-|..+.+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~------------G~~V~g~ApTgkAA~~L~e~-- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA------------GYRVVGGALAGKAAEGLEKE-- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc------------CCeEEEEcCcHHHHHHHHHh--
Confidence 4699999999998754 57789999999999984 33444333222 23489999997766554322
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
.++.. .|..+|+.........+..-++||||||-++.. .++..++..
T Consensus 445 -----~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~Ll~~ 491 (1102)
T PRK13826 445 -----AGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMALFVEA 491 (1102)
T ss_pred -----hCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHHHHHH
Confidence 12222 122222111112223466677999999995533 455566655
Q ss_pred cCCCCCCCceEEEEecc
Q 007365 322 MDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT 338 (606)
+. ....++|++--+
T Consensus 492 ~~---~~garvVLVGD~ 505 (1102)
T PRK13826 492 VT---RAGAKLVLVGDP 505 (1102)
T ss_pred HH---hcCCEEEEECCH
Confidence 52 234566666544
No 196
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0053 Score=64.58 Aligned_cols=133 Identities=11% Similarity=0.109 Sum_probs=69.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccc-hHHHHHHHHHHHHhhhcCCcEEEEEECCC
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPT-RELSSQIHDEAKKFSYQTGVKVVVAYGGA 258 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Pt-r~La~Qi~~~~~~~~~~~~~~~~~~~gg~ 258 (606)
+.++++++||+|||++..-.+. .+...... .....+||.+.| |.-+. +.++.++...++.+.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~-~~~~~~~~-------~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~~---- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA-IYGINSDD-------KSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKAI---- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHhhhcc-------CCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEee----
Confidence 5688999999999996543332 22211000 011235555555 22222 22555554445544322
Q ss_pred ChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 259 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 259 ~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
-++..+...+.. +.++++||+|++.++... ..++.++...+....+....++.+|||
T Consensus 240 -----------------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 240 -----------------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred -----------------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 133444444432 467899999999987532 223444443333222333457889999
Q ss_pred Ch-HHHHHHHHHh
Q 007365 339 FP-KEIQKLASDF 350 (606)
Q Consensus 339 ~~-~~i~~l~~~~ 350 (606)
.. ..+...+..|
T Consensus 297 ~~~~~~~~~~~~~ 309 (388)
T PRK12723 297 TKTSDVKEIFHQF 309 (388)
T ss_pred CCHHHHHHHHHHh
Confidence 84 4455555554
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.31 E-value=0.0024 Score=56.38 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=12.2
Q ss_pred cCCCEEEEccCCCchhHH
Q 007365 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
+.+.+++.+++|+|||.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 346789999999999985
No 198
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.25 E-value=0.00094 Score=65.51 Aligned_cols=87 Identities=25% Similarity=0.381 Sum_probs=67.9
Q ss_pred ccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCC-ChHHHHHHHhc-CCcEEEecHHHHHHHHHhccccccce
Q 007365 218 TVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGA-PINQQLRELER-GVDILVATPGRLVDLLERARVSLQMI 295 (606)
Q Consensus 218 ~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~ 295 (606)
...|.+||||..-.-|..+...++.|.. .+..+.-++.-. ...+|...+.+ .+.|.|+||+||..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 3458899999998888888888887731 123444444433 56777777775 68999999999999999999999999
Q ss_pred eEEEEecccc
Q 007365 296 RYLALDEADR 305 (606)
Q Consensus 296 ~~lVlDEah~ 305 (606)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998763
No 199
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0042 Score=64.86 Aligned_cols=133 Identities=18% Similarity=0.187 Sum_probs=66.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCC
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGA 258 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~ 258 (606)
+..+++++|||+|||++....+......... ...++|.+.+ .-.--.+.++.|+...++.+..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----------~~V~lit~D~--~R~ga~EqL~~~a~~~gv~~~~~~--- 201 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA----------SKVALLTTDS--YRIGGHEQLRIFGKILGVPVHAVK--- 201 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------CeEEEEeccc--ccccHHHHHHHHHHHcCCceEecC---
Confidence 5678999999999999644333222222110 0113333333 211223445555444454443332
Q ss_pred ChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 259 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 259 ~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
+++.+...+. .+.+.++|+||++=+.- +...+...+..+.........++.+|||
T Consensus 202 ------------------~~~~l~~~l~----~l~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~~~~~~~lLVLsAt 256 (374)
T PRK14722 202 ------------------DGGDLQLALA----ELRNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGADTPVQRLLLLNAT 256 (374)
T ss_pred ------------------CcccHHHHHH----HhcCCCEEEEcCCCCCc---ccHHHHHHHHHHhccCCCCeEEEEecCc
Confidence 3333333332 24567889999997532 1223333333332222334557889999
Q ss_pred ChH-HHHHHHHHhh
Q 007365 339 FPK-EIQKLASDFL 351 (606)
Q Consensus 339 ~~~-~i~~l~~~~l 351 (606)
... .+...+..|-
T Consensus 257 s~~~~l~evi~~f~ 270 (374)
T PRK14722 257 SHGDTLNEVVQAYR 270 (374)
T ss_pred cChHHHHHHHHHHH
Confidence 844 3445555553
No 200
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.25 E-value=0.0011 Score=69.93 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCCHHHHhHHHHH------hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHH
Q 007365 164 KPTPVQRHAIPIS------VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 236 (606)
Q Consensus 164 ~p~~~Q~~ai~~i------~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi 236 (606)
++++-|++++..+ .++..+++.++-|+|||+ ++-.+...+... +..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~~-----------~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRSR-----------GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhccc-----------cceEEEecchHHHHHhc
Confidence 3677899998877 667899999999999998 333333333321 23499999998877765
No 201
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.24 E-value=0.0028 Score=72.76 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=73.3
Q ss_pred CCCCHHHHhHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~-~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
..+++-|++|+..++.. +-+++.++.|+|||+. +-.++. +++.. +..+++++||-..|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~-~~~~~-----------g~~V~~~ApTg~Aa~~L~~~-- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAARE-AWEAA-----------GYRVIGAALSGKAAEGLQAE-- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHH-HHHhC-----------CCeEEEEeCcHHHHHHHHhc--
Confidence 36899999999988874 6789999999999984 333333 33221 23599999998766654432
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
.++.. .|-.+|+..+......+...++||+||+-++.. .++..++..
T Consensus 416 -----~g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~ 462 (744)
T TIGR02768 416 -----SGIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKE 462 (744)
T ss_pred -----cCCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHH
Confidence 12211 122222211222233466788999999996543 334455543
Q ss_pred cCCCCCCCceEEEEe
Q 007365 322 MDMPPPGVRQTMLFS 336 (606)
Q Consensus 322 l~~~~~~~~q~ll~S 336 (606)
.. ....++|++-
T Consensus 463 ~~---~~~~kliLVG 474 (744)
T TIGR02768 463 AE---EAGAKVVLVG 474 (744)
T ss_pred HH---hcCCEEEEEC
Confidence 31 2234555554
No 202
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.22 E-value=0.025 Score=71.44 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=125.3
Q ss_pred CCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
.+++-|++|+..++.. +-.++.+..|+|||.+ +-.++ .+.+.. +..+++++||..-+.++.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~-~~~~~~-----------G~~V~~lAPTgrAA~~L~e~~g 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLL-HLASEQ-----------GYEIQIITAGSLSAQELRQKIP 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHH-HHHHhc-----------CCeEEEEeCCHHHHHHHHHHhc
Confidence 5889999999988875 6789999999999984 33333 333321 2359999999987776665432
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
..+ ..+...+..+... .-..|...|+ .....+..-++||||||-++.. .++..++..
T Consensus 496 ~~A-------------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~ 552 (1960)
T TIGR02760 496 RLA-------------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDK 552 (1960)
T ss_pred chh-------------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHH
Confidence 210 0111111111111 1122333333 1223456778999999996543 455666654
Q ss_pred cCCCCCCCceEEEEecc--C----hHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhc
Q 007365 322 MDMPPPGVRQTMLFSAT--F----PKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVAN 395 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT--~----~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 395 (606)
.. ....++||+--+ + +..+..++...-.... ...........+ .+...++......+...+...
T Consensus 553 a~---~~garvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~--~l~~i~rq~~~v-----~i~~~~~~~r~~~ia~~y~~L 622 (1960)
T TIGR02760 553 AE---QHNSKLILLNDSAQRQGMSAGSAIDLLKEGGVTTY--AWVDTKQQKASV-----EISEAVDKLRVDYIASAWLDL 622 (1960)
T ss_pred Hh---hcCCEEEEEcChhhcCccccchHHHHHHHCCCcEE--EeecccccCcce-----eeeccCchHHHHHHHHHHHhc
Confidence 42 345677877554 2 2233333332211111 111111111111 111222223222333333322
Q ss_pred ccCCCCceEEEEEcchhhHHHHHHHHHh----CC------CCcEEee-CccCHHHHHHHHHhccCCC
Q 007365 396 GVHGKQSLTLVFVETKKGADALEHWLYM----NG------FPATTIH-GDRTQQERELALRSFKSGK 451 (606)
Q Consensus 396 ~~~~~~~~~LVF~~s~~~~~~l~~~L~~----~~------~~~~~lh-g~~~~~~R~~~l~~F~~g~ 451 (606)
. . ....++|++.+.++...|....+. .| +....|. -.|+..++... ..|+.|.
T Consensus 623 ~-~-~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 623 T-P-DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred c-c-ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 1 1 244689999998888888877643 22 2222332 25677777744 7777765
No 203
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.22 E-value=0.0016 Score=73.27 Aligned_cols=136 Identities=19% Similarity=0.189 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEE
Q 007365 148 DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALIL 226 (606)
Q Consensus 148 ~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d-~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil 226 (606)
.+.+.+.+. .+..++.-|++|+-.++.-+| .||.+=+|+|||++....+ ..+...+ .++|++
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~~g------------kkVLLt 719 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVALG------------KKVLLT 719 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHHcC------------CeEEEE
Confidence 444554443 234689999999988777654 6778889999999644333 2222221 249999
Q ss_pred ccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHH-----------------HHhcCCcEEEecHHHHHHHHHhcc
Q 007365 227 APTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLR-----------------ELERGVDILVATPGRLVDLLERAR 289 (606)
Q Consensus 227 ~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-----------------~l~~~~~Ilv~Tp~~L~~~l~~~~ 289 (606)
+=|-.-+..|.-.++.+ ++.+.-+-....+..+.. ..-..+.|+.+|---+.+.|.
T Consensus 720 syThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf--- 792 (1100)
T KOG1805|consen 720 SYTHSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF--- 792 (1100)
T ss_pred ehhhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh---
Confidence 99988888887777765 232222222222222222 223356777777444333332
Q ss_pred ccccceeEEEEeccccccc
Q 007365 290 VSLQMIRYLALDEADRMLD 308 (606)
Q Consensus 290 ~~l~~~~~lVlDEah~~~~ 308 (606)
..+.|+|.|+|||-.++.
T Consensus 793 -~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 793 -VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred -hccccCEEEEcccccccc
Confidence 455699999999998764
No 204
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.22 E-value=0.002 Score=66.09 Aligned_cols=123 Identities=20% Similarity=0.136 Sum_probs=74.6
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
+|+-|.++|.. ....++|.|..|||||.+.+.-++..+.... .. ...+|+|++|+..+..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~--------~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VP--------PERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-ST--------GGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CC--------hHHheecccCHHHHHHHHHHHHHhc
Confidence 57889999977 7789999999999999986555554443332 11 1239999999999999999998864
Q ss_pred hcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcccccc--ceeEEEEeccc
Q 007365 245 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQ--MIRYLALDEAD 304 (606)
Q Consensus 245 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~--~~~~lVlDEah 304 (606)
....... ............-..+.|.|-..+...+-+...... .-.+-|+|+..
T Consensus 70 ~~~~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 70 EEEQQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HHCCHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred Ccccccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 3321100 000011112223457899999888765533222111 12356777776
No 205
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.17 E-value=0.0043 Score=62.94 Aligned_cols=135 Identities=14% Similarity=0.199 Sum_probs=80.9
Q ss_pred hCCCCCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHH
Q 007365 159 RCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 236 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi 236 (606)
..++......|.-|+..++.. .=+.+.++.|||||+-++.+.+.+.+..+.. -++||.=|+..+-+.|
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y----------~KiiVtRp~vpvG~dI 292 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY----------RKIIVTRPTVPVGEDI 292 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh----------ceEEEecCCcCccccc
Confidence 346666778899999998886 4467789999999998888888887765432 2488887876543221
Q ss_pred HHHHHHhhhcCCcEEEEEECCCCh--HHHHHHHhcC----CcEEEecHHHHHHHHHhccccccce----------eEEEE
Q 007365 237 HDEAKKFSYQTGVKVVVAYGGAPI--NQQLRELERG----VDILVATPGRLVDLLERARVSLQMI----------RYLAL 300 (606)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~gg~~~--~~~~~~l~~~----~~Ilv~Tp~~L~~~l~~~~~~l~~~----------~~lVl 300 (606)
..+-|.... ..++..+... ...==++.+.|...+.+..+.+..+ .|||+
T Consensus 293 ---------------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiII 357 (436)
T COG1875 293 ---------------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIII 357 (436)
T ss_pred ---------------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEE
Confidence 111111100 0111111110 0111123455556665555433322 48999
Q ss_pred ecccccccCCCHHHHHHHHHhc
Q 007365 301 DEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l 322 (606)
|||+.+- ..++..|+..+
T Consensus 358 DEaQNLT----pheikTiltR~ 375 (436)
T COG1875 358 DEAQNLT----PHELKTILTRA 375 (436)
T ss_pred ehhhccC----HHHHHHHHHhc
Confidence 9999764 46888888887
No 206
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.09 E-value=0.0041 Score=55.87 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=53.0
Q ss_pred EeeCccCHHHHHHHHHhccCCCC-cEEEEccccccCCCCCC--ccEEEEecCCCC-------------------------
Q 007365 430 TIHGDRTQQERELALRSFKSGKT-PILVATDVAARGLDIPH--VAHVVNFDLPND------------------------- 481 (606)
Q Consensus 430 ~lhg~~~~~~R~~~l~~F~~g~~-~iLVaT~v~~~GlDip~--v~~VI~~d~p~s------------------------- 481 (606)
.+.-.....+...+++.|+...- .||++|.-+.+|||+|+ +..||...+|..
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 34444555567888999986543 79999977999999997 567887776631
Q ss_pred ------HhHHHHHhhccccCCCcceEEEEec
Q 007365 482 ------IDDYVHRIGRTGRAGKSGLATAFFN 506 (606)
Q Consensus 482 ------~~~y~QRiGR~gR~g~~G~~~~~~~ 506 (606)
.....|.+||+-|..++--++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1223488899999765433444443
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.06 E-value=0.0095 Score=61.51 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=38.9
Q ss_pred cceeEEEEecccccc-cCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhc
Q 007365 293 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLA 352 (606)
Q Consensus 293 ~~~~~lVlDEah~~~-~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~ 352 (606)
..+++||+|.+.++- +..+..++..+...+ .++..++.++||...+....++.|..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~----~pd~~iLVl~a~~g~d~~~~a~~f~~ 277 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVT----KPDLVIFVGDALAGNDAVEQAREFNE 277 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhh----CCceEEEeeccccchhHHHHHHHHHh
Confidence 456799999999875 334556677776655 34556788899987766666666653
No 208
>PRK08181 transposase; Validated
Probab=97.03 E-value=0.0068 Score=60.65 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=21.9
Q ss_pred CHHHHhHHH----HHhcCCCEEEEccCCCchhHH
Q 007365 166 TPVQRHAIP----ISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 166 ~~~Q~~ai~----~i~~~~d~li~a~TGsGKT~a 195 (606)
.+.|..++. ++..++++++++|+|+|||..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHH
Confidence 445555442 345678999999999999973
No 209
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.99 E-value=0.004 Score=56.07 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=48.7
Q ss_pred HHHHHHHHhccCCCC---cEEEEccc--cccCCCCCC--ccEEEEecCCC----CH------------------------
Q 007365 438 QERELALRSFKSGKT---PILVATDV--AARGLDIPH--VAHVVNFDLPN----DI------------------------ 482 (606)
Q Consensus 438 ~~R~~~l~~F~~g~~---~iLVaT~v--~~~GlDip~--v~~VI~~d~p~----s~------------------------ 482 (606)
.+...+++.|++... .||+++.- +.+|||+|+ ++.||...+|. ++
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 455678888886543 58888876 999999998 67888887764 11
Q ss_pred ---hHHHHHhhccccCCCcceEEEEec
Q 007365 483 ---DDYVHRIGRTGRAGKSGLATAFFN 506 (606)
Q Consensus 483 ---~~y~QRiGR~gR~g~~G~~~~~~~ 506 (606)
....|.+||+-|..++--++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 123488999999866544555554
No 210
>PRK06526 transposase; Provisional
Probab=96.96 E-value=0.0032 Score=62.60 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHhcCCCEEEEccCCCchhHHhH
Q 007365 174 PISVAGRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 174 ~~i~~~~d~li~a~TGsGKT~a~l 197 (606)
..+..++++++++|+|+|||..+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHH
Confidence 345567899999999999998543
No 211
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.96 E-value=0.059 Score=57.79 Aligned_cols=132 Identities=20% Similarity=0.262 Sum_probs=66.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCC
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGA 258 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~ 258 (606)
++.+++.+|||+|||++....+......... ...+||-+.+.-.+ -.+.++.++...++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g----------~~V~li~~D~~r~~--a~eqL~~~a~~~~vp~~~----- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK----------KKVALITLDTYRIG--AVEQLKTYAKIMGIPVEV----- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------CeEEEEECCccHHH--HHHHHHHHHHHhCCceEc-----
Confidence 4578999999999998644332222101110 11244555442111 123444443333433322
Q ss_pred ChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEec
Q 007365 259 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 259 ~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SA 337 (606)
+.++..|...+.. +.++++||+|.+-+... ......+..++... .......+++||
T Consensus 284 ----------------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~---~~~~~~~LVl~a 340 (424)
T PRK05703 284 ----------------VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFS---GEPIDVYLVLSA 340 (424)
T ss_pred ----------------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc---CCCCeEEEEEEC
Confidence 2344445554442 34688999999865322 11223444444421 123455788999
Q ss_pred cCh-HHHHHHHHHh
Q 007365 338 TFP-KEIQKLASDF 350 (606)
Q Consensus 338 T~~-~~i~~l~~~~ 350 (606)
|.. ..+..+...|
T Consensus 341 ~~~~~~l~~~~~~f 354 (424)
T PRK05703 341 TTKYEDLKDIYKHF 354 (424)
T ss_pred CCCHHHHHHHHHHh
Confidence 875 4555555554
No 212
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.94 E-value=0.0079 Score=57.36 Aligned_cols=134 Identities=20% Similarity=0.183 Sum_probs=69.4
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCCh
Q 007365 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~ 260 (606)
.+++++|||+|||++..--+. ++...+ . ..+||.+-|-- .--.++++.|+...++.+.......+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa-~~~~~~-~----------~v~lis~D~~R--~ga~eQL~~~a~~l~vp~~~~~~~~~~ 68 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAA-RLKLKG-K----------KVALISADTYR--IGAVEQLKTYAEILGVPFYVARTESDP 68 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHHHTT-------------EEEEEESTSS--THHHHHHHHHHHHHTEEEEESSTTSCH
T ss_pred EEEEECCCCCchHhHHHHHHH-HHhhcc-c----------cceeecCCCCC--ccHHHHHHHHHHHhccccchhhcchhh
Confidence 468899999999996433222 222221 1 12455544322 112345555555556666543322211
Q ss_pred HHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccC
Q 007365 261 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATF 339 (606)
Q Consensus 261 ~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~ 339 (606)
.+. +.+.++.. ..+++++|++|-+-+... .....++..++..+ .+..-.+.+|||.
T Consensus 69 ~~~-----------------~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 69 AEI-----------------AREALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL----NPDEVHLVLSATM 125 (196)
T ss_dssp HHH-----------------HHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----SSSEEEEEEEGGG
T ss_pred HHH-----------------HHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc----CCccceEEEeccc
Confidence 111 11222221 234577899998876432 22345666666666 4455688899998
Q ss_pred hHHHHHHHHHhh
Q 007365 340 PKEIQKLASDFL 351 (606)
Q Consensus 340 ~~~i~~l~~~~l 351 (606)
..+....+..|.
T Consensus 126 ~~~~~~~~~~~~ 137 (196)
T PF00448_consen 126 GQEDLEQALAFY 137 (196)
T ss_dssp GGHHHHHHHHHH
T ss_pred ChHHHHHHHHHh
Confidence 665444444443
No 213
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.92 E-value=0.012 Score=52.27 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHH
Q 007365 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
++.+++.+++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57899999999999973
No 214
>PRK04296 thymidine kinase; Provisional
Probab=96.88 E-value=0.0022 Score=60.95 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=24.3
Q ss_pred ecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhc
Q 007365 276 ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 276 ~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
.....+++.+.. .-.++++|||||+|.+- .+++..++..+
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l 102 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVL 102 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHH
Confidence 444555555443 23467899999998642 24466666664
No 215
>PRK06893 DNA replication initiation factor; Validated
Probab=96.83 E-value=0.0045 Score=60.73 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=29.3
Q ss_pred ccceeEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChH
Q 007365 292 LQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPK 341 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~ 341 (606)
+.++++|||||+|.+.. ..+...+..++..+. ....+++++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~---~~~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIK---EQGKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHH---HcCCcEEEEeCCCCh
Confidence 44678999999998753 334455666666552 123456677777533
No 216
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.79 E-value=0.011 Score=62.33 Aligned_cols=45 Identities=22% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCCCCHHHHhHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007365 162 YVKPTPVQRHAIPI----SVAGRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~----i~~~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
|...+|-|-+-+-. +-.+-+.++.+|+|+|||.+.+-.+++..+.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~ 62 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH 62 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh
Confidence 45566777655433 3335678999999999999866555554443
No 217
>PRK08116 hypothetical protein; Validated
Probab=96.79 E-value=0.044 Score=55.06 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=28.2
Q ss_pred ccceeEEEEecccccccCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHH
Q 007365 292 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ 344 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~ 344 (606)
+.++++|||||++...... ....+..|+.... .....+|+.|-..|.++.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~---~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWAREKVYNIIDSRY---RKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHH---HCCCCEEEECCCCHHHHH
Confidence 4567899999996422111 2334455555431 233457777776666654
No 218
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.77 E-value=0.11 Score=54.18 Aligned_cols=133 Identities=21% Similarity=0.334 Sum_probs=70.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECC
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGG 257 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg 257 (606)
+++.+++.+|||.|||++..--+....+..+ ..-.+||...|--.. -++.++.|+.-.++.+.+++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~----------~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~-- 267 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK----------KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVY-- 267 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc----------CcceEEEEeccchhh--HHHHHHHHHHHhCCceEEec--
Confidence 3678999999999999863322222221111 112367777654322 24555666555555554443
Q ss_pred CChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEec
Q 007365 258 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 258 ~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SA 337 (606)
+|.-|...+. .+.++++|.+|=+=+-... ...+.++.+.+... .+..-.+.+||
T Consensus 268 -------------------~~~el~~ai~----~l~~~d~ILVDTaGrs~~D--~~~i~el~~~~~~~-~~i~~~Lvlsa 321 (407)
T COG1419 268 -------------------SPKELAEAIE----ALRDCDVILVDTAGRSQYD--KEKIEELKELIDVS-HSIEVYLVLSA 321 (407)
T ss_pred -------------------CHHHHHHHHH----HhhcCCEEEEeCCCCCccC--HHHHHHHHHHHhcc-ccceEEEEEec
Confidence 4444444433 4666778888877653211 12333333333222 33445788899
Q ss_pred cCh-HHHHHHHHHh
Q 007365 338 TFP-KEIQKLASDF 350 (606)
Q Consensus 338 T~~-~~i~~l~~~~ 350 (606)
|.. .++..+...|
T Consensus 322 t~K~~dlkei~~~f 335 (407)
T COG1419 322 TTKYEDLKEIIKQF 335 (407)
T ss_pred CcchHHHHHHHHHh
Confidence 974 3445555544
No 219
>PRK05642 DNA replication initiation factor; Validated
Probab=96.73 E-value=0.0066 Score=59.75 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=28.2
Q ss_pred ccceeEEEEecccccccC-CCHHHHHHHHHhcCCCCCCCceEEEEeccC-hH
Q 007365 292 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGVRQTMLFSATF-PK 341 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~-gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~-~~ 341 (606)
+.++++||+|++|.+... .+...+-.+++.+. ...++ +++++|. |.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~~g~~-ilits~~~p~ 142 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLR---DSGRR-LLLAASKSPR 142 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHH---hcCCE-EEEeCCCCHH
Confidence 345678999999976432 34566777777662 22344 5555554 44
No 220
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.66 E-value=0.00014 Score=80.41 Aligned_cols=80 Identities=26% Similarity=0.357 Sum_probs=63.4
Q ss_pred chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccC---CCCcEE
Q 007365 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS---GKTPIL 455 (606)
Q Consensus 379 ~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~---g~~~iL 455 (606)
..|+..|..+++.... ...++|||..-....+.|.+++...+ ....+.|..+..+|..++++|.. .+..+|
T Consensus 614 ~~k~~~l~~~~~~l~~-----~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfl 687 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKS-----SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFL 687 (696)
T ss_pred HHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEE
Confidence 3444555555555443 37889999999999999999999988 88899999999999999999983 356689
Q ss_pred EEccccccC
Q 007365 456 VATDVAARG 464 (606)
Q Consensus 456 VaT~v~~~G 464 (606)
.+|...+.|
T Consensus 688 lstra~g~g 696 (696)
T KOG0383|consen 688 LSTRAGGLG 696 (696)
T ss_pred eecccccCC
Confidence 999876543
No 221
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.58 E-value=0.0053 Score=70.96 Aligned_cols=156 Identities=18% Similarity=0.134 Sum_probs=90.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhccc-----CCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEE
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ-----RPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVV 253 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~-----~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~ 253 (606)
++++++.-..|.|||.+-+.-.+...-+..... ........-...|||||. .+..||++++.+-+... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 467788889999999976655544322111000 001111222348999996 56799999999876553 67777
Q ss_pred EECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc------------------ccccee--EEEEecccccccCCCHH
Q 007365 254 AYGGAPINQQLRELERGVDILVATPGRLVDLLERARV------------------SLQMIR--YLALDEADRMLDMGFEP 313 (606)
Q Consensus 254 ~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~------------------~l~~~~--~lVlDEah~~~~~gf~~ 313 (606)
..|-..........--.+|||++|+..|..-+..... .|-.+. -|+||||+++-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 6653322111111122489999999999776643311 111122 289999996543 345
Q ss_pred HHHHHHHhcCCCCCCCceEEEEeccChHHH
Q 007365 314 QIRKIVQQMDMPPPGVRQTMLFSATFPKEI 343 (606)
Q Consensus 314 ~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i 343 (606)
...+.+..|. ....=..|.|+-..+
T Consensus 530 ~~a~M~~rL~-----~in~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 530 AAAEMVRRLH-----AINRWCVTGTPIQKI 554 (1394)
T ss_pred HHHHHHHHhh-----hhceeeecCCchhhh
Confidence 5556655551 223567788854333
No 222
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.55 E-value=0.0032 Score=75.47 Aligned_cols=93 Identities=28% Similarity=0.393 Sum_probs=76.7
Q ss_pred eEEEEEcchhhHHHHHHHHHhC-CCCcEEeeCcc-----------CHHHHHHHHHhccCCCCcEEEEccccccCCCCCCc
Q 007365 403 LTLVFVETKKGADALEHWLYMN-GFPATTIHGDR-----------TQQERELALRSFKSGKTPILVATDVAARGLDIPHV 470 (606)
Q Consensus 403 ~~LVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~-----------~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v 470 (606)
..|+||+....+..+.+.++.. .+.+..+.|.+ .+..+++++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 3699999999988888887654 22333344432 22347889999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccccC
Q 007365 471 AHVVNFDLPNDIDDYVHRIGRTGRA 495 (606)
Q Consensus 471 ~~VI~~d~p~s~~~y~QRiGR~gR~ 495 (606)
+.|+.++.|.....|+|+.||+-++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999664
No 223
>PRK06921 hypothetical protein; Provisional
Probab=96.53 E-value=0.034 Score=55.72 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=20.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
.+..+++.+++|+|||.. +.+|...+.+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhh
Confidence 357899999999999973 3444444443
No 224
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.047 Score=53.88 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=30.4
Q ss_pred ccceeEEEEecccccccCCCHH-HHHHHHHhcCCCCCCCceEEEEeccChHHHH
Q 007365 292 LQMIRYLALDEADRMLDMGFEP-QIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ 344 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~-~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~ 344 (606)
+..+++|||||++......|.. .+..|+..-. .....+++.|---+.++.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry---~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRS---SSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH---hCCCCEEEeCCCCHHHHH
Confidence 5578899999999876544443 3444555431 223457777766555543
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.027 Score=58.16 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=28.8
Q ss_pred ccceeEEEEecccccccCCC-HHHHHHHHHhcCCCCCCCceEEEEeccChHHHH
Q 007365 292 LQMIRYLALDEADRMLDMGF-EPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ 344 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf-~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~ 344 (606)
+.++++||||+.+......| ...+-.|+.... .....+|+.|--.+.++.
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~---~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRL---LRQKKMIISTNLSLEELL 294 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHH---HCCCCEEEECCCCHHHHH
Confidence 55678999999987543332 344555555441 122346666655555553
No 226
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.0087 Score=69.03 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=16.4
Q ss_pred CCEEEEccCCCchhHHhHHHH
Q 007365 180 RDLMACAQTGSGKTAAFCFPI 200 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpi 200 (606)
+-+|++++.|+|||+++.+.+
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 347999999999999765443
No 227
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.49 E-value=0.011 Score=58.09 Aligned_cols=46 Identities=11% Similarity=0.225 Sum_probs=26.1
Q ss_pred eeEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHH
Q 007365 295 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKE 342 (606)
Q Consensus 295 ~~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~ 342 (606)
+++|||||+|.+.. ..+...+..++..+.. ....++|+.|...|..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e--~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILE--SGRTRLLITGDRPPRQ 144 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH--cCCCeEEEeCCCChHH
Confidence 46899999998753 2345556666655421 1123455544444444
No 228
>PRK08727 hypothetical protein; Validated
Probab=96.47 E-value=0.014 Score=57.33 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=28.0
Q ss_pred ccceeEEEEecccccccCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHH
Q 007365 292 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ 344 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~ 344 (606)
+.++++|||||+|.+.... ....+-.++..+. ....++|+.|...|.+..
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRAR---AAGITLLYTARQMPDGLA 141 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHH---HcCCeEEEECCCChhhhh
Confidence 3456789999999876432 2334445555441 122345555555566553
No 229
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.46 E-value=0.0076 Score=53.12 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHH
Q 007365 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
+..+++.+|+|+|||+.
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 46789999999999995
No 230
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.41 E-value=0.019 Score=52.37 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=14.2
Q ss_pred ccceeEEEEecccccccC
Q 007365 292 LQMIRYLALDEADRMLDM 309 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~ 309 (606)
.....+||+||++.+.+.
T Consensus 83 ~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 83 RGGDDLIILDELTRLVRA 100 (165)
T ss_pred CCCCEEEEEEcHHHHHHH
Confidence 456789999999987643
No 231
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.35 E-value=0.033 Score=59.24 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=26.3
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHHhH
Q 007365 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~l 197 (606)
+-......+..+..++++++.+++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667778889999999999999998543
No 232
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.32 E-value=0.017 Score=63.83 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=32.8
Q ss_pred ccceeEEEEecccccccCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHH
Q 007365 292 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQK 345 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~ 345 (606)
+.++++|||||+|.+.... ....+-.+++.+. ....++|+.|-..|.++..
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~---e~gk~IIITSd~~P~eL~~ 426 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH---NANKQIVLSSDRPPKQLVT 426 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH---hcCCCEEEecCCChHhhhh
Confidence 4557899999999876533 3455556666653 2345677766666666543
No 233
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.23 E-value=0.023 Score=65.53 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=52.1
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.++|-|++|+.. ....++|.|..|||||.+.. .-+.+++....... -.+|+|+-|+..|..+.+.+.++
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~-~Ria~Li~~~~v~p--------~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLV-HRIAWLMQVENASP--------YSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHH-HHHHHHHHcCCCCh--------hHeEeeeccHHHHHHHHHHHHHH
Confidence 589999999964 34689999999999999744 44445554321111 13999999999999999999886
Q ss_pred h
Q 007365 244 S 244 (606)
Q Consensus 244 ~ 244 (606)
.
T Consensus 78 ~ 78 (721)
T PRK11773 78 L 78 (721)
T ss_pred h
Confidence 3
No 234
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.21 E-value=0.016 Score=57.68 Aligned_cols=65 Identities=18% Similarity=0.391 Sum_probs=53.2
Q ss_pred HHHHhccCCCCcEEEEccccccCCCCCC--------ccEEEEecCCCCHhHHHHHhhccccCCCc-ceEEEEec
Q 007365 442 LALRSFKSGKTPILVATDVAARGLDIPH--------VAHVVNFDLPNDIDDYVHRIGRTGRAGKS-GLATAFFN 506 (606)
Q Consensus 442 ~~l~~F~~g~~~iLVaT~v~~~GlDip~--------v~~VI~~d~p~s~~~y~QRiGR~gR~g~~-G~~~~~~~ 506 (606)
...+.|.+|+..|+|.++.++.||.+.. -.+-|.+.+||+.+..+|..||+.|.++. .-.|.++.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 3467899999999999999999998864 33567889999999999999999999884 33344444
No 235
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.20 E-value=0.035 Score=57.41 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=27.7
Q ss_pred CCCHHHHhHHHHHhcC----CCEEEEccCCCchhHHhHH
Q 007365 164 KPTPVQRHAIPISVAG----RDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~----~d~li~a~TGsGKT~a~ll 198 (606)
.++|+|...+..+... +-+|+++|.|+|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 3579999999877764 3578999999999985543
No 236
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.081 Score=55.30 Aligned_cols=131 Identities=18% Similarity=0.298 Sum_probs=68.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccc-h-HHHHHHHHHHHHhhhcCCcEEEEEECC
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPT-R-ELSSQIHDEAKKFSYQTGVKVVVAYGG 257 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Pt-r-~La~Qi~~~~~~~~~~~~~~~~~~~gg 257 (606)
+.++++++||+|||+....-+. .+..... ..++|.+-+ | ..+.|+..... ..++.+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~~Gk-----------kVglI~aDt~RiaAvEQLk~yae----~lgipv~v---- 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHGKKK-----------TVGFITTDHSRIGTVQQLQDYVK----TIGFEVIA---- 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHHcCC-----------cEEEEecCCcchHHHHHHHHHhh----hcCCcEEe----
Confidence 5678999999999995433322 2222110 124555533 3 23444443222 22333221
Q ss_pred CChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEec
Q 007365 258 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 258 ~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SA 337 (606)
+.+|..|.+.+.... ...++++|++|-+=+.... ...+.++...+....+ ..-++.+||
T Consensus 302 -----------------~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~P-devlLVLsA 360 (436)
T PRK11889 302 -----------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEP-DYICLTLSA 360 (436)
T ss_pred -----------------cCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCC-CeEEEEECC
Confidence 235666666554321 1125789999998765432 2344444444432223 334666898
Q ss_pred cC-hHHHHHHHHHhh
Q 007365 338 TF-PKEIQKLASDFL 351 (606)
Q Consensus 338 T~-~~~i~~l~~~~l 351 (606)
|. ..++...++.|-
T Consensus 361 Ttk~~d~~~i~~~F~ 375 (436)
T PRK11889 361 SMKSKDMIEIITNFK 375 (436)
T ss_pred ccChHHHHHHHHHhc
Confidence 75 456666666654
No 237
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.15 E-value=0.03 Score=60.58 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=31.2
Q ss_pred ccceeEEEEecccccccC-CCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHH
Q 007365 292 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ 344 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~-gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~ 344 (606)
+.++++|||||+|.+... ...+.+..++..+. ....|+|+.|-..|..+.
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~ 254 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI---ENDKQLFFSSDKSPELLN 254 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHH---HcCCcEEEECCCCHHHHh
Confidence 456789999999977532 23455666666652 233466666666666553
No 238
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.13 E-value=0.002 Score=59.90 Aligned_cols=124 Identities=22% Similarity=0.261 Sum_probs=54.9
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHH
Q 007365 183 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQ 262 (606)
Q Consensus 183 li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~ 262 (606)
++.|+-|-|||.+.-+.+. .++... ...++|.+|+.+-++.+++.+.+-....+++...... ...
T Consensus 1 VltA~RGRGKSa~lGl~~a-~l~~~~-----------~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAA-ALIQKG-----------KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCC-CSSS----------------EEEE-SS--S-HHHHHCC----------------------
T ss_pred CccCCCCCCHHHHHHHHHH-HHHHhc-----------CceEEEecCCHHHHHHHHHHHHhhccccccccccccc---ccc
Confidence 5789999999996444332 222221 1349999999998888877776544333333200000 000
Q ss_pred HHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccCh
Q 007365 263 QLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 340 (606)
Q Consensus 263 ~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~ 340 (606)
..........|-+..|+.+... ....++||+|||=.+- -+.+..++... ..++||.|+.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~--------~~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF--------PRVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS--------SEEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC--------CEEEEEeecc
Confidence 0001112456777777776543 1234789999998643 35666665433 3678888864
No 239
>PHA02533 17 large terminase protein; Provisional
Probab=96.11 E-value=0.029 Score=61.81 Aligned_cols=135 Identities=16% Similarity=0.084 Sum_probs=78.8
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|.|+|++.+..+...+-.++..+=..|||.+....++...+... +..+++++|++.-|..+.+.++.+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----------~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----------DKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHH
Confidence 588999999988766666677778999999976654544443221 135999999999999999888865
Q ss_pred hhcCC--cEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007365 244 SYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 244 ~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
..... ++..+... ....-.+..+..|.+.|... ....=.+..++|+||+|.+.+ +.+.+..+...
T Consensus 128 ie~~P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~ 194 (534)
T PHA02533 128 IELLPDFLQPGIVEW----NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPV 194 (534)
T ss_pred HHhCHHHhhcceeec----CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHH
Confidence 43221 11100000 00011123455554444210 111122456899999997654 33444444444
Q ss_pred c
Q 007365 322 M 322 (606)
Q Consensus 322 l 322 (606)
+
T Consensus 195 l 195 (534)
T PHA02533 195 I 195 (534)
T ss_pred H
Confidence 4
No 240
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.11 E-value=0.018 Score=66.40 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=52.9
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
..+++-|++|+.. ....++|.|..|||||.+. ..-+.+++....... -.+|+|+-|+..|..+.+.+.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L-~~Ria~Li~~~~v~p--------~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVL-THRIAWLLSVENASP--------HSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcCCCCH--------HHeEeeeccHHHHHHHHHHHHH
Confidence 3589999999964 3468999999999999974 444445554321111 1399999999999999999988
Q ss_pred hh
Q 007365 243 FS 244 (606)
Q Consensus 243 ~~ 244 (606)
+.
T Consensus 72 ~~ 73 (715)
T TIGR01075 72 LL 73 (715)
T ss_pred Hh
Confidence 64
No 241
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.07 E-value=0.0099 Score=57.81 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=33.0
Q ss_pred ccceeEEEEecccccccCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHH
Q 007365 292 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ 344 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~ 344 (606)
+..+++||||.+|.+.... +...+-.+++.+. ....++|+.|...|.++.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~---~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI---ESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH---HTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHH---hhCCeEEEEeCCCCcccc
Confidence 5578899999999876532 3456666666653 234577777777776543
No 242
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.07 E-value=0.028 Score=61.12 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=29.5
Q ss_pred ccceeEEEEecccccccCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHH
Q 007365 292 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKL 346 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l 346 (606)
+.++++|||||+|.+.... ....+-.++..+. ....++++.|.+.|..+..+
T Consensus 209 ~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~---~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 209 YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALH---EAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHH---HCCCcEEEECCCCHHHHHHH
Confidence 3457799999999875432 2334555555442 22345666555556555433
No 243
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.12 Score=54.93 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=77.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECC
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGG 257 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg 257 (606)
.+..+.++++||+|||+....-+-..+...... ...+|.+.+.-. -..+.+..++...++.+..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~----------~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~v~-- 255 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGAD----------KVALLTTDSYRI--GGHEQLRIYGKLLGVSVRSIK-- 255 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC----------eEEEEecCCcch--hHHHHHHHHHHHcCCceecCC--
Confidence 356688999999999995432222122211100 125666665322 223334444444454443322
Q ss_pred CChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEec
Q 007365 258 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 258 ~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SA 337 (606)
++..+...+. .+.+.+++++|.+=+.- ....+..-+..+.........++.+||
T Consensus 256 -------------------~~~dl~~al~----~l~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~a 309 (420)
T PRK14721 256 -------------------DIADLQLMLH----ELRGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNA 309 (420)
T ss_pred -------------------CHHHHHHHHH----HhcCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcC
Confidence 2222222222 25667789999863221 112222222233222234456788999
Q ss_pred cC-hHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHH
Q 007365 338 TF-PKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQ 392 (606)
Q Consensus 338 T~-~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 392 (606)
|. ...+...+..|-.-. ... -.+..+++..+.-.++.++...
T Consensus 310 t~~~~~~~~~~~~f~~~~----------~~~---~I~TKlDEt~~~G~~l~~~~~~ 352 (420)
T PRK14721 310 TSSGDTLDEVISAYQGHG----------IHG---CIITKVDEAASLGIALDAVIRR 352 (420)
T ss_pred CCCHHHHHHHHHHhcCCC----------CCE---EEEEeeeCCCCccHHHHHHHHh
Confidence 97 445555555543211 011 1123345556666677766654
No 244
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.6 Score=50.90 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q 007365 178 AGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~ 196 (606)
.++.++++++||+|||+..
T Consensus 349 ~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3577889999999999854
No 245
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.99 E-value=0.18 Score=55.34 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=81.3
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCC-------cEEeeCccCHHHHHHHHHhcc----CCCCcEEEEc--cccccCCCC
Q 007365 401 QSLTLVFVETKKGADALEHWLYMNGFP-------ATTIHGDRTQQERELALRSFK----SGKTPILVAT--DVAARGLDI 467 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~-------~~~lhg~~~~~~R~~~l~~F~----~g~~~iLVaT--~v~~~GlDi 467 (606)
.+-+++|+++.+....+.+.+.+.|+- .+.+-..-+ -+.+++.|. .|.-.||+|. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 466999999999999999988766532 222222212 456777775 3455677776 788999999
Q ss_pred CC--ccEEEEecCCCC------------------------Hh--------HHHHHhhccccCCCcceEEEEeccCChhhH
Q 007365 468 PH--VAHVVNFDLPND------------------------ID--------DYVHRIGRTGRAGKSGLATAFFNENNLSLA 513 (606)
Q Consensus 468 p~--v~~VI~~d~p~s------------------------~~--------~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~ 513 (606)
.| ++.||...+|.. .+ .--|-||||-|.-++=-++.|++..=.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~--- 782 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYA--- 782 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhc---
Confidence 77 677777777641 11 123999999998777667777764211
Q ss_pred HHHHHHHHHhcCcccHHHHHHHH
Q 007365 514 RPLAELMQESNQEVPAWLTRYAS 536 (606)
Q Consensus 514 ~~l~~~l~~~~q~vp~~L~~~~~ 536 (606)
+. ....+|.|+.+...
T Consensus 783 ~p-------~~RKLp~WI~~~v~ 798 (821)
T KOG1133|consen 783 RP-------LSRKLPKWIRKRVH 798 (821)
T ss_pred Cc-------hhhhccHHHHhHhc
Confidence 11 12278899866553
No 246
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.98 E-value=0.027 Score=63.96 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=52.0
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
-..+++-|++|+-. ....++|.|..|||||.+.+ .-+..++...... .-.+|+|+.|+..|..+.+.+.
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~-~r~ayLl~~~~~~--------~~~IL~ltft~~AA~em~eRL~ 262 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLV-ARAGWLLARGQAQ--------PEQILLLAFGRQAAEEMDERIR 262 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHH-HHHHHHHHhCCCC--------HHHeEEEeccHHHHHHHHHHHH
Confidence 35699999999953 34578999999999999744 4444444332111 1249999999999999998887
Q ss_pred Hhh
Q 007365 242 KFS 244 (606)
Q Consensus 242 ~~~ 244 (606)
...
T Consensus 263 ~~l 265 (684)
T PRK11054 263 ERL 265 (684)
T ss_pred Hhc
Confidence 654
No 247
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.94 E-value=0.037 Score=53.95 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q 007365 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
...+++.+++|+|||..+
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 478999999999999843
No 248
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.94 E-value=0.028 Score=55.94 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=31.9
Q ss_pred ccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc---ChHHHHHHHHHh
Q 007365 290 VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT---FPKEIQKLASDF 350 (606)
Q Consensus 290 ~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT---~~~~i~~l~~~~ 350 (606)
.....+++|||||||.|-..- ...++++++.. +....+++...- ++..+..-+.+|
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~----s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDF----SRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhcc----ccceEEEEEcCChhhCChHHHhhHHHh
Confidence 356678999999999887543 34555666554 333344554433 234444444443
No 249
>PF13173 AAA_14: AAA domain
Probab=95.87 E-value=0.1 Score=46.00 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=19.3
Q ss_pred ceeEEEEecccccccCCCHHHHHHHHHh
Q 007365 294 MIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
.-.+|+|||+|.+-+ +...+..++..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~ 86 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDN 86 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHh
Confidence 456899999999854 56777777664
No 250
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.86 E-value=0.046 Score=59.01 Aligned_cols=56 Identities=7% Similarity=0.214 Sum_probs=34.2
Q ss_pred ccceeEEEEecccccccCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHh
Q 007365 292 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDF 350 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~ 350 (606)
+..+++|||||+|.+.... ....+..++..+. ....++|+.|.+.|.++..+...+
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~---~~~k~IIlts~~~p~~l~~l~~rL 256 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH---TEGKLIVISSTCAPQDLKAMEERL 256 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHH---HCCCcEEEecCCCHHHHhhhHHHH
Confidence 3467899999999876432 3455556665542 123566666666677765444443
No 251
>PRK12377 putative replication protein; Provisional
Probab=95.86 E-value=0.14 Score=50.58 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=18.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
...+++.+++|+|||.. +.+|...+.
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 36799999999999983 334444444
No 252
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.16 Score=57.71 Aligned_cols=132 Identities=18% Similarity=0.182 Sum_probs=65.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCC
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGA 258 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~ 258 (606)
++-+++++|||+|||+++..-+......... ...+||.+.|--.+ ..+.++.|+...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----------kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~------ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA----------DQLALLTTDSFRIG--ALEQLRIYGRILGVPVH------ 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----------CeEEEecCcccchH--HHHHHHHHHHhCCCCcc------
Confidence 4567899999999998644332221111110 01244444432211 12334444433343332
Q ss_pred ChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 259 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 259 ~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
++.+|..+.+.+. .+.+.++|+||=+=++-.. ..+...+..+.....+...++.+|||
T Consensus 247 ---------------~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt 304 (767)
T PRK14723 247 ---------------AVKDAADLRFALA----ALGDKHLVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAA 304 (767)
T ss_pred ---------------ccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCC
Confidence 2235666655554 2445678888887765321 22222222222222344567888888
Q ss_pred Ch-HHHHHHHHHh
Q 007365 339 FP-KEIQKLASDF 350 (606)
Q Consensus 339 ~~-~~i~~l~~~~ 350 (606)
.. ..+..+++.|
T Consensus 305 ~~~~~l~~i~~~f 317 (767)
T PRK14723 305 SHGDTLNEVVHAY 317 (767)
T ss_pred CcHHHHHHHHHHH
Confidence 64 4455566555
No 253
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.83 E-value=0.062 Score=53.82 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 007365 180 RDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~l 197 (606)
.++++.+|+|+|||+.+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 578999999999998543
No 254
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.81 E-value=0.057 Score=50.82 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=32.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 182 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 182 ~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
+++.+++|+|||+..+-.+...+ +.. ..+++++ +.+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~g------------~~v~~~s-~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-ARG------------EPGLYVT-LEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HCC------------CcEEEEE-CCCCHHHHHHHHHHc
Confidence 68999999999996554444433 221 1267665 456778888777776
No 255
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.81 E-value=0.067 Score=60.24 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=24.6
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChH
Q 007365 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPK 341 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~ 341 (606)
..++++||||+|+|....|. .+.++++.. +... +++|..|-+.
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEP----P~~v-~FILaTtd~~ 160 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEP----PPHV-KFILATTDPQ 160 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhc----CCCe-EEEEEECChh
Confidence 45789999999988664433 334444442 3333 4444455333
No 256
>COG4371 Predicted membrane protein [Function unknown]
Probab=95.81 E-value=0.013 Score=55.75 Aligned_cols=15 Identities=33% Similarity=0.813 Sum_probs=8.7
Q ss_pred CCCCCcccccCCCCC
Q 007365 551 NRFGGRDFRRDGSFT 565 (606)
Q Consensus 551 ~~~gg~~~~~~~~~~ 565 (606)
+++||..||..++..
T Consensus 51 GriGGgSfraps~~s 65 (334)
T COG4371 51 GRIGGGSFRAPSGYS 65 (334)
T ss_pred CCccCCCCCCCCCCC
Confidence 466666666655433
No 257
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.79 E-value=0.061 Score=60.48 Aligned_cols=141 Identities=23% Similarity=0.259 Sum_probs=83.3
Q ss_pred CCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 164 KPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
.+..-|.+.+..++.. +-+++.|.-|=|||.+.-+.+. .+..... .-.++|++|+.+-++.+.+.+.
T Consensus 214 ~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~~----------~~~iiVTAP~~~nv~~Lf~fa~ 282 (758)
T COG1444 214 EDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLAG----------SVRIIVTAPTPANVQTLFEFAG 282 (758)
T ss_pred hhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhcC----------CceEEEeCCCHHHHHHHHHHHH
Confidence 3444444455555554 4688999999999997666552 2222110 1249999999999988888777
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHH-hcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHH
Q 007365 242 KFSYQTGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 320 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~ 320 (606)
+-....+++-.+...... .+... .+...|=+-+|.... ..-++||+|||=-+- .+.+.+++.
T Consensus 283 ~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~ 345 (758)
T COG1444 283 KGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLR 345 (758)
T ss_pred HhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHh
Confidence 655555544322222110 00000 011234455554432 115689999998653 467777776
Q ss_pred hcCCCCCCCceEEEEeccCh
Q 007365 321 QMDMPPPGVRQTMLFSATFP 340 (606)
Q Consensus 321 ~l~~~~~~~~q~ll~SAT~~ 340 (606)
.. +.++||.|+.
T Consensus 346 ~~--------~rv~~sTTIh 357 (758)
T COG1444 346 RF--------PRVLFSTTIH 357 (758)
T ss_pred hc--------CceEEEeeec
Confidence 54 4789999974
No 258
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.79 E-value=0.031 Score=59.90 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=27.4
Q ss_pred ceeEEEEecccccccCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHH
Q 007365 294 MIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQK 345 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~ 345 (606)
.+++|||||+|.+.... ....+-.++..+. ....++|+.|...|..+..
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~---~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALH---ENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHH---HCCCCEEEecCCCHHHHhh
Confidence 46789999999876432 2233445554442 1234555555445555543
No 259
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.79 E-value=0.09 Score=52.88 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=37.2
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
.+++++++|+.|||. |+.++.+....... ......|.++|-+|...-....+..+-.
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHH
Confidence 689999999999998 44566554433221 2223447888888877666655555443
No 260
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.78 E-value=0.19 Score=50.36 Aligned_cols=133 Identities=16% Similarity=0.241 Sum_probs=69.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccch--HHHHHHHHHHHHhhhcCCcEEEEEE
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTR--ELSSQIHDEAKKFSYQTGVKVVVAY 255 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr--~La~Qi~~~~~~~~~~~~~~~~~~~ 255 (606)
.+..+++++++|+|||+.+..-+ ..+.... ....+|.+.+. ..+.||...+.. .++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~--~~l~~~~----------~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~-- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA--WQFHGKK----------KTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA-- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH--HHHHHcC----------CeEEEEecCCCCHHHHHHHHHHhhh----cCceEEe--
Confidence 34678999999999999554332 2222110 01244444333 455555544433 2333221
Q ss_pred CCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q 007365 256 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLF 335 (606)
Q Consensus 256 gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~ 335 (606)
..++..|.+.+..-. ....+++||+|-+=++... ...++++...+... .+..-.+.+
T Consensus 136 -------------------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~-~~~~~~LVl 192 (270)
T PRK06731 136 -------------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQV-EPDYICLTL 192 (270)
T ss_pred -------------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhh-CCCeEEEEE
Confidence 124555554443221 2346789999999765321 23344443333222 223346779
Q ss_pred eccC-hHHHHHHHHHhh
Q 007365 336 SATF-PKEIQKLASDFL 351 (606)
Q Consensus 336 SAT~-~~~i~~l~~~~l 351 (606)
|||. ..++...++.|-
T Consensus 193 ~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 193 SASMKSKDMIEIITNFK 209 (270)
T ss_pred cCccCHHHHHHHHHHhC
Confidence 9986 557777777664
No 261
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.74 E-value=0.066 Score=57.07 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=17.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l 204 (606)
.++++.+++|+|||++ +..++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 6799999999999995 33334333
No 262
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.74 E-value=0.11 Score=56.20 Aligned_cols=52 Identities=10% Similarity=0.275 Sum_probs=30.7
Q ss_pred ceeEEEEecccccccCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHH
Q 007365 294 MIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS 348 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~ 348 (606)
.+++|||||+|.+.+.. ....+..++..+. ....++|+.|...|.++..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~---~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH---HcCCeEEEECCCCHHHHHHHHH
Confidence 46789999999876542 2344555555442 2234566655566666655443
No 263
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.075 Score=57.70 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.4
Q ss_pred CCEEEEccCCCchhHHhHHH
Q 007365 180 RDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llp 199 (606)
+.+|+++|.|+|||+++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 46899999999999965543
No 264
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.69 E-value=0.084 Score=64.52 Aligned_cols=66 Identities=24% Similarity=0.247 Sum_probs=45.2
Q ss_pred CCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
..+++-|++|+..++.. +-++|.+..|+|||++. -.++..+..... ..+..++.++||-.-+..+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e--------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPE--------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHhh--------ccCceEEEEechHHHHHHHH
Confidence 36899999999999865 78999999999999852 222222211100 11245888999987766553
No 265
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.077 Score=54.46 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=38.7
Q ss_pred ceeEEEEecccccccCC-----C---HHHHHHHHHhcCCC---CCCCceEEEEecc-ChHHHHHHHHHhhcCcEEEEe
Q 007365 294 MIRYLALDEADRMLDMG-----F---EPQIRKIVQQMDMP---PPGVRQTMLFSAT-FPKEIQKLASDFLANYVFLAV 359 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~g-----f---~~~i~~i~~~l~~~---~~~~~q~ll~SAT-~~~~i~~l~~~~l~~~~~~~~ 359 (606)
.-+.|.|||+|.+...- . ...-.+++.+++-. ....+.++.+-|| +|=++.+.+..-+...++|.+
T Consensus 304 APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPL 381 (491)
T KOG0738|consen 304 APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPL 381 (491)
T ss_pred CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeC
Confidence 34679999999876431 1 11112233333222 1233457778888 677888877777777666544
No 266
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.078 Score=58.84 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=24.2
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~S 336 (606)
...++++||||+|+|....+ ..+++.|..+ +....+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa----NALLKTLEEP-P~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF----NAMLKTLEEP-PEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHH----HHHHHhhccC-CCCceEEEEe
Confidence 34678999999998865433 3444444333 3444455544
No 267
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.045 Score=58.88 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.9
Q ss_pred CEEEEccCCCchhHHhHH
Q 007365 181 DLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ll 198 (606)
.+|+++|.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999996543
No 268
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.62 E-value=0.028 Score=49.35 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.2
Q ss_pred eeEEEEecccccccCC
Q 007365 295 IRYLALDEADRMLDMG 310 (606)
Q Consensus 295 ~~~lVlDEah~~~~~g 310 (606)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999987654
No 269
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.063 Score=60.15 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhHH
Q 007365 180 RDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ll 198 (606)
+.+|++++.|+|||+++.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3579999999999986543
No 270
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.55 E-value=0.06 Score=65.67 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=77.3
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
++|+-|.++|. ..+.+++|.|..|||||.+.+--++..+...... -.+|||+=|+..|..+.+.+.+-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~----------~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDI----------DRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCH----------hhEEEEeccHHHHHHHHHHHHHH
Confidence 36889999997 4688999999999999998666666655433111 13999999999999888887764
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccce--eEEEEecccc
Q 007365 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI--RYLALDEADR 305 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~--~~lVlDEah~ 305 (606)
.... +.- ........+.+..-...-|+|...|...+-+.....-++ .+=|+||...
T Consensus 69 l~~~-~~~-----~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 69 LQKA-LQQ-----EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHH-Hhc-----CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 3211 000 001111112222224677999998875554433222222 3456888775
No 271
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.55 E-value=0.061 Score=58.13 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhHH
Q 007365 179 GRDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ll 198 (606)
++.+++++|||+|||++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 45688999999999996443
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.51 E-value=0.15 Score=54.67 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=29.8
Q ss_pred eeEEEEecccccc-cCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhh
Q 007365 295 IRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFL 351 (606)
Q Consensus 295 ~~~lVlDEah~~~-~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l 351 (606)
.++||+|.+-++. +.....++..+...+ .++.-++.++||...+....++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~----~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAV----KPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHh----cccceeEEEeccccHHHHHHHHHHH
Confidence 3789999985433 222334445554444 2344567778877665555555543
No 273
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.45 E-value=0.033 Score=60.98 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=50.2
Q ss_pred HHHHhHHHHHhc-----C----CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007365 167 PVQRHAIPISVA-----G----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 167 ~~Q~~ai~~i~~-----~----~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
|+|+..+-.++. + +.+++.-+=+.|||......++..++-.. ..++.+++++++++-|..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g---------~~~~~i~~~A~~~~QA~~~f 71 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG---------EPGAEIYCAANTRDQAKIVF 71 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC---------ccCceEEEEeCCHHHHHHHH
Confidence 678888776652 2 45788889999999854443343443221 12346999999999999999
Q ss_pred HHHHHhhhc
Q 007365 238 DEAKKFSYQ 246 (606)
Q Consensus 238 ~~~~~~~~~ 246 (606)
+.++++...
T Consensus 72 ~~~~~~i~~ 80 (477)
T PF03354_consen 72 DEAKKMIEA 80 (477)
T ss_pred HHHHHHHHh
Confidence 999988644
No 274
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.40 E-value=0.047 Score=58.33 Aligned_cols=148 Identities=12% Similarity=0.221 Sum_probs=84.1
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchH-HHHHHHHHHHHhhhcCCcEEEEEECCCC
Q 007365 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRE-LSSQIHDEAKKFSYQTGVKVVVAYGGAP 259 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~-La~Qi~~~~~~~~~~~~~~~~~~~gg~~ 259 (606)
-.++.+..|||||.+.++-++..++.... ...+||+-++.. |...++..++......++....-....+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~----------~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKK----------QQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCC----------CcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc
Confidence 46788999999999888888877776411 134899989887 6666777777665544443211111110
Q ss_pred hHHHHHHHhc-CCcEEEecH-HHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEec
Q 007365 260 INQQLRELER-GVDILVATP-GRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 260 ~~~~~~~l~~-~~~Ilv~Tp-~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SA 337 (606)
. .+ .+.. +..|++..- +...+ ......+.++.+|||..+.. ..+..++..++.+ .....+++|.
T Consensus 73 ~--~i-~~~~~g~~i~f~g~~d~~~~-----ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~--~~~~~i~~t~ 138 (396)
T TIGR01547 73 M--EI-KILNTGKKFIFKGLNDKPNK-----LKSGAGIAIIWFEEASQLTF----EDIKELIPRLRET--GGKKFIIFSS 138 (396)
T ss_pred c--EE-EecCCCeEEEeecccCChhH-----hhCcceeeeehhhhhhhcCH----HHHHHHHHHhhcc--CCccEEEEEc
Confidence 0 00 0111 334555442 11111 11234468999999998743 3566666655432 2222578888
Q ss_pred cChHHHHHHHHHhhc
Q 007365 338 TFPKEIQKLASDFLA 352 (606)
Q Consensus 338 T~~~~i~~l~~~~l~ 352 (606)
|++....-+.+.|+.
T Consensus 139 NP~~~~~w~~~~f~~ 153 (396)
T TIGR01547 139 NPESPLHWVKKRFIE 153 (396)
T ss_pred CcCCCccHHHHHHHh
Confidence 876533344444443
No 275
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.39 E-value=0.13 Score=58.85 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=75.7
Q ss_pred eccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHh-CCCCcEEeeCccCHHHHHHHHHhccCCCCcE
Q 007365 376 VHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYM-NGFPATTIHGDRTQQERELALRSFKSGKTPI 454 (606)
Q Consensus 376 ~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~i 454 (606)
.....|....+..+...... ..++||.++++..+..+.+.|+. .+..+..+||+++..+|.+.+.+...|..+|
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~-----g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~I 244 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQ-----GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKV 244 (679)
T ss_pred CCCChHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 34456777766666655543 55799999999999999999876 4778999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEec
Q 007365 455 LVATDVAARGLDIPHVAHVVNFD 477 (606)
Q Consensus 455 LVaT~v~~~GlDip~v~~VI~~d 477 (606)
+|+|..+. -+.+.++.+||.-+
T Consensus 245 VVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 245 VIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred EEeccHHh-cccccCCCEEEEEC
Confidence 99996433 25667888877543
No 276
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.19 Score=52.46 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHhHH
Q 007365 179 GRDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ll 198 (606)
++.+++++|+|+|||+...-
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46788999999999985443
No 277
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.38 E-value=0.16 Score=62.88 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 236 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi 236 (606)
..+++-|++|+..++.. +-++|++..|+|||++ +-.++..+..... ..+..++.++||-.-|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~--------~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPE--------SERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhc--------ccCceEEEECCcHHHHHHH
Confidence 36899999999998875 6789999999999985 3333333321110 1123588899998776654
No 278
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.30 E-value=0.071 Score=61.08 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=50.6
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
+++-|++++.. ....++|.|..|||||.+.+.-+. +++......+ ..+|+|+.|+..|.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~-~ll~~~~~~p--------~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIA-YLIQNCGYKA--------RNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHhcCCCH--------HHeEEEeccHHHHHHHHHHHHHHh
Confidence 78899999864 356899999999999997544444 4443221111 239999999999999999888754
No 279
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.09 Score=57.74 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.9
Q ss_pred CEEEEccCCCchhHHhHH
Q 007365 181 DLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ll 198 (606)
-+|+++|.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 469999999999986543
No 280
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=0.12 Score=56.86 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=73.9
Q ss_pred ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-CCCcEEeeCccCHHHHHHHHHhccCCCCcEE
Q 007365 377 HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQERELALRSFKSGKTPIL 455 (606)
Q Consensus 377 ~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 455 (606)
....|....+.++...... ..++||.+++...+..+++.|++. +..+..+|+.++..+|.+++.+...|+.+|+
T Consensus 6 TGsGKT~v~l~~i~~~l~~-----g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLAL-----GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 3456777666666665533 557999999999999999998764 6778899999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEe
Q 007365 456 VATDVAARGLDIPHVAHVVNF 476 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~~ 476 (606)
|+|..+-- +.++++.+||.-
T Consensus 81 VGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 81 IGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred ECChHHHc-CcccCCCEEEEE
Confidence 99964332 456777877743
No 281
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.12 Score=53.20 Aligned_cols=37 Identities=35% Similarity=0.453 Sum_probs=28.1
Q ss_pred CCCCCHHHHhHHHHHhc----CC---CEEEEccCCCchhHHhHH
Q 007365 162 YVKPTPVQRHAIPISVA----GR---DLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~----~~---d~li~a~TGsGKT~a~ll 198 (606)
+..++|+|..++..+.. ++ -+++.++.|+||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 34688999999976653 32 589999999999985443
No 282
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.11 Score=57.81 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhHH
Q 007365 180 RDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ll 198 (606)
+-+|+++|.|+|||.++.+
T Consensus 38 HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3569999999999986543
No 283
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.28 E-value=0.048 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=19.4
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHH
Q 007365 176 SVAGRDLMACAQTGSGKTAAFCFPII 201 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil 201 (606)
+..+.-+++.|++|+|||+..+..+.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 45567889999999999985444333
No 284
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.096 Score=58.27 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=26.1
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHH
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEI 343 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i 343 (606)
....++|||||+|+|.. .....++..+..+ +. .-+++|.+|-+..+
T Consensus 117 ~g~~kVIIIDEad~Lt~----~a~naLLk~LEEP-~~-~~ifILaTt~~~kl 162 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR----EAFNALLKTLEEP-PA-RVTFVLATTEPHKF 162 (624)
T ss_pred cCCceEEEEEChHhCCH----HHHHHHHHHhhcc-CC-CEEEEEecCChhhh
Confidence 34578999999998753 3344455555432 22 23455555544433
No 285
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.15 E-value=0.039 Score=61.82 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=41.5
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhc
Q 007365 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQY 209 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~ 209 (606)
.-+.|.+-++.+..++++.++++...|+|+||..-.+.++.++.++..
T Consensus 404 cgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~ 451 (1282)
T KOG0921|consen 404 CGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERG 451 (1282)
T ss_pred ccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhH
Confidence 345788999999999999999999999999999888888988887653
No 286
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.13 E-value=0.14 Score=50.06 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=25.2
Q ss_pred ceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChH
Q 007365 294 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPK 341 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~ 341 (606)
..++|||||+|.+-.. ....+..++..+. .....+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~---~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVR---AHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHH---HcCCcEEEEeCCCCH
Confidence 4568999999986432 2344555555442 112234677777543
No 287
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.11 E-value=0.11 Score=59.57 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=63.6
Q ss_pred CceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-ccccCCCCCCccEEE
Q 007365 401 QSLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLDIPHVAHVV 474 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~~~GlDip~v~~VI 474 (606)
..+++|.++|..-|..+++.|+. .++.+..+||+++..+|.++++...+|...|+|+|. .+...+.+.++.+||
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 55799999999988888776654 468899999999999999999999999999999995 455667788888877
No 288
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.99 E-value=0.098 Score=58.46 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.2
Q ss_pred CCEEEEccCCCchhHHhHHH
Q 007365 180 RDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llp 199 (606)
+.+|++++.|+|||.++.+.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999965543
No 289
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.96 E-value=0.2 Score=51.63 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=23.5
Q ss_pred ceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 294 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
..++|||||+|.+........+..+++.. +...++|+ +++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~----~~~~~~Il-t~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAY----SKNCSFII-TAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhc----CCCceEEE-EcC
Confidence 46789999999873332344555555543 34444554 444
No 290
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.96 E-value=0.043 Score=54.60 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=33.8
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 177 VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
.++.++++.+++|+|||.. +.+|...+.+.. .-++.+++.+|+.++.....
T Consensus 103 ~~~~nl~l~G~~G~GKThL-a~Ai~~~l~~~g-------------~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHL-AIAIGNELLKAG-------------ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcEEEECCCCCcHHHH-HHHHHHHHHHcC-------------CeEEEEEHHHHHHHHHHHHh
Confidence 3678999999999999984 334444444221 24566677788777665544
No 291
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.96 E-value=0.24 Score=51.03 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=24.5
Q ss_pred CCHHHHhHHHHHh----cC---CCEEEEccCCCchhHHhHHH
Q 007365 165 PTPVQRHAIPISV----AG---RDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 165 p~~~Q~~ai~~i~----~~---~d~li~a~TGsGKT~a~llp 199 (606)
++|+|+..+..+. ++ .-.++.+|.|.||+..+...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~ 44 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRAL 44 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHH
Confidence 4677777766543 33 35789999999999865443
No 292
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.51 Score=49.54 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=20.9
Q ss_pred HHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHH
Q 007365 173 IPISVAG--RDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 173 i~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
.|++..+ .++++.++||+|||++. -.++..+.
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l~ 67 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATV-KFVMEELE 67 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHH-HHHHHHHH
Confidence 3444443 56999999999999863 33344443
No 293
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.093 Score=55.28 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHhH
Q 007365 181 DLMACAQTGSGKTAAFC 197 (606)
Q Consensus 181 d~li~a~TGsGKT~a~l 197 (606)
-+++.+|.|+|||+.+.
T Consensus 40 ~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 40 AWLLSGTRGVGKTTIAR 56 (363)
T ss_pred EEEEecCCCCCHHHHHH
Confidence 36899999999998544
No 294
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.88 E-value=0.12 Score=57.84 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.8
Q ss_pred EEEEccCCCchhHHhHHH
Q 007365 182 LMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 182 ~li~a~TGsGKT~a~llp 199 (606)
+|+.++.|+|||+++.+.
T Consensus 41 yLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLL 58 (647)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999965443
No 295
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.099 Score=60.03 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHhHH
Q 007365 182 LMACAQTGSGKTAAFCF 198 (606)
Q Consensus 182 ~li~a~TGsGKT~a~ll 198 (606)
+|+++|.|+|||+++.+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999996443
No 296
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.87 E-value=0.023 Score=63.12 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=49.9
Q ss_pred CCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH-HHH
Q 007365 164 KPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH-DEA 240 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~-~~~ 240 (606)
..+|||.+.+.++... +.++++..+-+|||.+.+. ++-.++...+. -+|++.||.++|..+. +.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~~P~-----------~~l~v~Pt~~~a~~~~~~rl 83 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQDPG-----------PMLYVQPTDDAAKDFSKERL 83 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEeCCC-----------CEEEEEEcHHHHHHHHHHHH
Confidence 5789999999988775 6788899999999995444 33333333221 2999999999999987 445
Q ss_pred HHh
Q 007365 241 KKF 243 (606)
Q Consensus 241 ~~~ 243 (606)
..+
T Consensus 84 ~Pm 86 (557)
T PF05876_consen 84 DPM 86 (557)
T ss_pred HHH
Confidence 544
No 297
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.86 E-value=9 Score=43.49 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=53.4
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
.+||.|+|+.-+.++++.|.+. ++.+..+++..+..+.... +.. ..+||||| +.+.++ +++.++++
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~arG-IDip~V~~ 316 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAARG-LDVERISL 316 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHhcC-CCcccCCE
Confidence 4999999999999999888764 6788888998776554333 333 57999999 655554 57888998
Q ss_pred EEEec
Q 007365 298 LALDE 302 (606)
Q Consensus 298 lVlDE 302 (606)
||.-+
T Consensus 317 VI~~d 321 (629)
T PRK11634 317 VVNYD 321 (629)
T ss_pred EEEeC
Confidence 88533
No 298
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.12 Score=57.35 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=23.6
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~S 336 (606)
....+++||||+|+|... ....+++.+..+ +....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~----A~NALLK~LEEp-p~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA----GFNALLKIVEEP-PEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH----HHHHHHHHHhcC-CCCeEEEEEe
Confidence 356789999999988654 333444444333 3444444444
No 299
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.79 E-value=0.3 Score=49.11 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=33.8
Q ss_pred cceeEEEEecccccc-cCCCHHHHHHHHHhcC--CCCCCCceEEEEeccChHHHHHHHHHhh
Q 007365 293 QMIRYLALDEADRML-DMGFEPQIRKIVQQMD--MPPPGVRQTMLFSATFPKEIQKLASDFL 351 (606)
Q Consensus 293 ~~~~~lVlDEah~~~-~~gf~~~i~~i~~~l~--~~~~~~~q~ll~SAT~~~~i~~l~~~~l 351 (606)
..+++||+|=+-++. +.....++.++...+. .....+..++.++||...+....+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 457788888877654 2223345555555442 1112445678889997665545555555
No 300
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.77 E-value=0.25 Score=51.29 Aligned_cols=16 Identities=50% Similarity=0.652 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHh
Q 007365 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
.+++.+|+|+|||..+
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999853
No 301
>PRK09183 transposase/IS protein; Provisional
Probab=94.77 E-value=0.18 Score=50.38 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=18.2
Q ss_pred HhcCCCEEEEccCCCchhHHhH
Q 007365 176 SVAGRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~l 197 (606)
+..+.++++.+|+|+|||..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 5567899999999999998433
No 302
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.73 E-value=0.41 Score=54.80 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=18.8
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHh
Q 007365 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
..+.+|||||+|.+... ....|..++..
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 44678999999998764 23445555554
No 303
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.73 E-value=0.25 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=18.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l 204 (606)
..+++.+|+|+|||.+ +..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 6799999999999985 34444444
No 304
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.72 E-value=0.074 Score=60.72 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+++-|++|+.. ....++|.|..|||||.+.+.- +.+++...... + -.+|+|+-|+..|..+.+.+.++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~R-ia~Li~~~~v~-p-------~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNK-IAHLIRGCGYQ-A-------RHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHH-HHHHHHhcCCC-H-------HHeeeEechHHHHHHHHHHHHHH
Confidence 478999999865 3467889999999999974444 44444332111 0 13999999999999999888876
Q ss_pred h
Q 007365 244 S 244 (606)
Q Consensus 244 ~ 244 (606)
.
T Consensus 71 l 71 (672)
T PRK10919 71 L 71 (672)
T ss_pred h
Confidence 4
No 305
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.21 Score=55.22 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=24.0
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~S 336 (606)
....+++||||+|+|.... ...+++.+..+ +....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a----~naLLK~LEep-p~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA----FNAMLKTLEEP-PEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH----HHHHHHHHhCC-CCCEEEEEEe
Confidence 3567899999999886533 33444444333 4444555544
No 306
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.3 Score=54.83 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=24.1
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~S 336 (606)
+...++|||||+|.|... ....++..+..+ +....+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~----a~naLLK~LEeP-p~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTA----AFNAFLKTLEEP-PPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHH----HHHHHHHHHhCC-CCCeEEEEEe
Confidence 456789999999998643 344555555443 2333344433
No 307
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.64 E-value=0.31 Score=52.32 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHHh
Q 007365 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
..+++.+|+|+|||+.+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47899999999999853
No 308
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.64 E-value=0.19 Score=55.62 Aligned_cols=135 Identities=18% Similarity=0.122 Sum_probs=81.6
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcC--CcEEEEE
Q 007365 177 VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQT--GVKVVVA 254 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~--~~~~~~~ 254 (606)
.+.+-.++..|--.|||.... +++..++... .+..+++++|.+..++.++++++.+...+ .-.+..+
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~----------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v 320 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALATF----------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV 320 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHhC----------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee
Confidence 345677888899999998544 6666555331 12359999999999999999999876543 1111112
Q ss_pred ECCCChHHHHHHHhcCC--cEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceE
Q 007365 255 YGGAPINQQLRELERGV--DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQT 332 (606)
Q Consensus 255 ~gg~~~~~~~~~l~~~~--~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ 332 (606)
.| ..+ .-.+..+. .|.+++- -.....-=..+++||+|||+-+.+ +.+..++-.+. ..+.++
T Consensus 321 kG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~---~~n~k~ 383 (738)
T PHA03368 321 KG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLN---QTNCKI 383 (738)
T ss_pred cC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHh---ccCccE
Confidence 22 211 00112222 4555531 011122234789999999998765 34455553332 346789
Q ss_pred EEEeccC
Q 007365 333 MLFSATF 339 (606)
Q Consensus 333 ll~SAT~ 339 (606)
|++|.|-
T Consensus 384 I~ISS~N 390 (738)
T PHA03368 384 IFVSSTN 390 (738)
T ss_pred EEEecCC
Confidence 9999883
No 309
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.19 Score=56.44 Aligned_cols=41 Identities=15% Similarity=0.365 Sum_probs=24.2
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
+...++|||||+|.|.. ..+..++..+..++ .. .+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LEepp-~~-tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLEEPP-PH-AIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHhcCC-CC-eEEEEEeC
Confidence 45678999999998764 33445555554332 22 34444444
No 310
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.60 E-value=0.21 Score=63.34 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=43.2
Q ss_pred CCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhH---HHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFC---FPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 236 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~l---lpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi 236 (606)
..+++-|++|+..++.. +-++|.+..|+|||+... -++.. +... .+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~-~~~~-----------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQ-AFES-----------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHH-HHHh-----------cCCeEEEEeChHHHHHHH
Confidence 36899999999998875 567889999999998531 12222 2221 123588999997766654
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.60 E-value=0.11 Score=50.84 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=35.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHh-hhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMR-EQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~-~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
+..+++.+++|+|||+-.+..+...+.+ .. .+++++ +.+-..++.+.++.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge-------------~vlyvs-~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGE-------------KVLYVS-FEEPPEELIENMKSF 70 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT---------------EEEEE-SSS-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC-------------cEEEEE-ecCCHHHHHHHHHHc
Confidence 4778999999999999666556555554 22 266666 455667777777776
No 312
>PHA00729 NTP-binding motif containing protein
Probab=94.59 E-value=0.64 Score=45.04 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=38.1
Q ss_pred CcEEEecHHHHHHHHHhccccccceeEEEEecccccccC-CCH----HHHHHHHHhcCCCCCCCceEEEEeccChHHHHH
Q 007365 271 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM-GFE----PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQK 345 (606)
Q Consensus 271 ~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~-gf~----~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~ 345 (606)
...++.+...|++.+.........+++||+||+=--+.. .|. .....+...+ .+..+++.+...-+.++..
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aL----rSR~~l~il~~ls~edL~~ 134 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALI----RTRVSAVIFTTPSPEDLAF 134 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHH----HhhCcEEEEecCCHHHHHH
Confidence 356666777777666543222344678999994221111 011 1122233333 2223456666666776666
Q ss_pred HHHH
Q 007365 346 LASD 349 (606)
Q Consensus 346 l~~~ 349 (606)
.++.
T Consensus 135 ~Lr~ 138 (226)
T PHA00729 135 YLRE 138 (226)
T ss_pred HHHh
Confidence 6654
No 313
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.55 E-value=0.1 Score=50.17 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.7
Q ss_pred CCEEEEccCCCchhHH
Q 007365 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
.++|+.+|.|+|||+.
T Consensus 51 ~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTL 66 (233)
T ss_dssp -EEEEESSTTSSHHHH
T ss_pred ceEEEECCCccchhHH
Confidence 4689999999999983
No 314
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.32 Score=53.65 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHhHH
Q 007365 181 DLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ll 198 (606)
.+|+++|.|+|||+.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999996543
No 315
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.52 E-value=0.26 Score=55.78 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=77.4
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-C-CCcEEeeCccCHHHHHHHHHhccCCCCcEE
Q 007365 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-G-FPATTIHGDRTQQERELALRSFKSGKTPIL 455 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 455 (606)
.+.|.+..+.++.+.+.. +..+||.++....+..+.+.|+.. + ..+..+|++++..+|.+.+.+..+|+.+|+
T Consensus 170 GSGKTevyl~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IV 244 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVV 244 (665)
T ss_pred CCcHHHHHHHHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEE
Confidence 467888899999888765 566999999999999999999764 3 568899999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEec
Q 007365 456 VATDVAARGLDIPHVAHVVNFD 477 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~~d 477 (606)
|.|..+. =+-+++...||..+
T Consensus 245 iGtRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 245 VGTRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred EEcceeE-EeccCCCCEEEEEc
Confidence 9996433 24566777777443
No 316
>PTZ00293 thymidine kinase; Provisional
Probab=94.52 E-value=0.21 Score=47.78 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHHhHH
Q 007365 179 GRDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ll 198 (606)
|+=-++.+|++||||+-.+-
T Consensus 4 G~i~vi~GpMfSGKTteLLr 23 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR 23 (211)
T ss_pred eEEEEEECCCCChHHHHHHH
Confidence 44568899999999985333
No 317
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.52 E-value=0.1 Score=53.56 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=39.0
Q ss_pred CCHHHHhHHHHH-hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHH
Q 007365 165 PTPVQRHAIPIS-VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELS 233 (606)
Q Consensus 165 p~~~Q~~ai~~i-~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La 233 (606)
+++.|...+..+ ..+.++|++++||||||+. +-.++..+..... .-+++++-.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~----------~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAP----------EDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCC----------CceEEEecCCcccc
Confidence 667788777654 4568999999999999983 4555554432111 12478888888874
No 318
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.50 E-value=0.28 Score=50.83 Aligned_cols=35 Identities=29% Similarity=0.204 Sum_probs=25.7
Q ss_pred CCHHHHhHHHHHh----cC---CCEEEEccCCCchhHHhHHH
Q 007365 165 PTPVQRHAIPISV----AG---RDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 165 p~~~Q~~ai~~i~----~~---~d~li~a~TGsGKT~a~llp 199 (606)
++|+|...+..+. ++ .-.|+.+|.|+||+..+...
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~ 44 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH
Confidence 5788888887654 33 35789999999999865433
No 319
>CHL00181 cbbX CbbX; Provisional
Probab=94.49 E-value=0.34 Score=49.20 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHhH
Q 007365 179 GRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~l 197 (606)
+.++++.+++|+|||+.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999998644
No 320
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.65 Score=49.76 Aligned_cols=141 Identities=18% Similarity=0.304 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHhCCCCCCCHHHHhHHH----HH---hcC-----CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCC
Q 007365 147 IDLGEELNLNIRRCKYVKPTPVQRHAIP----IS---VAG-----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR 214 (606)
Q Consensus 147 ~~l~~~l~~~l~~~~~~~p~~~Q~~ai~----~i---~~~-----~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~ 214 (606)
++.+++.++.....+.....|.=.+.+. .+ ... ..+++.+|.|||||..+.-.++ .
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~-----~------- 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL-----S------- 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh-----h-------
Confidence 4677777777766665554443333332 11 111 4689999999999974332221 1
Q ss_pred CCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccc
Q 007365 215 GARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM 294 (606)
Q Consensus 215 ~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~ 294 (606)
...|++=|++|..-. |.+.......+ ...++.. .-+.
T Consensus 562 ---S~FPFvKiiSpe~mi------------------------G~sEsaKc~~i--------------~k~F~DA--YkS~ 598 (744)
T KOG0741|consen 562 ---SDFPFVKIISPEDMI------------------------GLSESAKCAHI--------------KKIFEDA--YKSP 598 (744)
T ss_pred ---cCCCeEEEeChHHcc------------------------CccHHHHHHHH--------------HHHHHHh--hcCc
Confidence 346889899884321 11111111111 1111111 1355
Q ss_pred eeEEEEecccccccCC-----CHHH-HHHHHHhcCCCCCCCceEEEEeccChHH
Q 007365 295 IRYLALDEADRMLDMG-----FEPQ-IRKIVQQMDMPPPGVRQTMLFSATFPKE 342 (606)
Q Consensus 295 ~~~lVlDEah~~~~~g-----f~~~-i~~i~~~l~~~~~~~~q~ll~SAT~~~~ 342 (606)
+++||+|++.+++|+. |... +..++-.++..+|+.++++.|..|-..+
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~ 652 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE 652 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH
Confidence 7899999999999974 4433 3444455666667777777777664443
No 321
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.52 Score=46.88 Aligned_cols=130 Identities=17% Similarity=0.266 Sum_probs=75.0
Q ss_pred HHHhcC-----CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCC
Q 007365 174 PISVAG-----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTG 248 (606)
Q Consensus 174 ~~i~~~-----~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~ 248 (606)
|.+..+ +.+|+.+|.|+||+. |.-+++ .+.. ...+-+.+..|+..|.-+-.++..+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVA---TEAn------------STFFSvSSSDLvSKWmGESEkLVkn-- 216 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVA---TEAN------------STFFSVSSSDLVSKWMGESEKLVKN-- 216 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHH---hhcC------------CceEEeehHHHHHHHhccHHHHHHH--
Confidence 456665 569999999999997 322222 1110 1677777788888776666654211
Q ss_pred cEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCC---CHHHHHHH----HHh
Q 007365 249 VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---FEPQIRKI----VQQ 321 (606)
Q Consensus 249 ~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g---f~~~i~~i----~~~ 321 (606)
|+.+.+. ..-++|.+||+|.|.... -.+..++| +-+
T Consensus 217 --------------------------------LFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQ 259 (439)
T KOG0739|consen 217 --------------------------------LFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQ 259 (439)
T ss_pred --------------------------------HHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHh
Confidence 2222221 234579999999776432 22233333 333
Q ss_pred cCCCCCCCceEEEEecc-ChHHHHHHHHHhhcCcEEEEe
Q 007365 322 MDMPPPGVRQTMLFSAT-FPKEIQKLASDFLANYVFLAV 359 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT-~~~~i~~l~~~~l~~~~~~~~ 359 (606)
+.-.....--++.+-|| +|=.+...++.-+...++|.+
T Consensus 260 MqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 260 MQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred hhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccC
Confidence 33333345568889999 355555556665666666544
No 322
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.41 E-value=0.27 Score=53.34 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCCCCCH----HHHhHHHHHhc--CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEE
Q 007365 151 EELNLNIRRCKYVKPTP----VQRHAIPISVA--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLAL 224 (606)
Q Consensus 151 ~~l~~~l~~~~~~~p~~----~Q~~ai~~i~~--~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~L 224 (606)
+-|...|++..-.+++. +|++==.++.. ++-++|++..|||||++++--+...+......- ..+| +|
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l------~~k~-vl 264 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL------QAKP-VL 264 (747)
T ss_pred HHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc------ccCc-eE
Confidence 44566777766555554 46555555544 466899999999999987665544444332111 1122 99
Q ss_pred EEccchHHHHHHHHHHHHhh
Q 007365 225 ILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 225 il~Ptr~La~Qi~~~~~~~~ 244 (606)
|+.|.+.+..=|...+-.+.
T Consensus 265 vl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEcCcHHHHHHHHHhchhhc
Confidence 99999999998888887764
No 323
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.40 E-value=0.17 Score=53.37 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=36.9
Q ss_pred ceeEEEEecccccccC-CCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHH
Q 007365 294 MIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLA 347 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~-gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~ 347 (606)
++++|++|.++.+... ...+.+-.+++.+. ....|+|+.|..+|.++..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~---~~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALL---ENGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHH---hcCCEEEEEcCCCchhhcccc
Confidence 7889999999987654 35666667777764 334588888888888765433
No 324
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.39 E-value=0.18 Score=48.27 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=24.2
Q ss_pred Hhccccc--cceeEEEEecccccccCCCHHHHHHHHHhc
Q 007365 286 ERARVSL--QMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 286 ~~~~~~l--~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
.+.++.+ -..+.|||||||.|-+ +-...+++.++-.
T Consensus 103 AQ~kv~lp~grhKIiILDEADSMT~-gAQQAlRRtMEiy 140 (333)
T KOG0991|consen 103 AQKKVTLPPGRHKIIILDEADSMTA-GAQQALRRTMEIY 140 (333)
T ss_pred HHhhccCCCCceeEEEeeccchhhh-HHHHHHHHHHHHH
Confidence 3344444 5678999999998865 3456666666655
No 325
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.34 E-value=0.081 Score=53.81 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHhHHHHHhcCC-CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHH
Q 007365 160 CKYVKPTPVQRHAIPISVAGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 235 (606)
Q Consensus 160 ~~~~~p~~~Q~~ai~~i~~~~-d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Q 235 (606)
..|..+++-|...+..+...+ ++|+++.||||||+ ++-++..+.... -++|++--|.||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i~~~------------eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFIDSD------------ERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcCCCc------------ccEEEEeehhhhccC
Confidence 356679999999998877775 99999999999998 333332222111 148999898887443
No 326
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.34 E-value=0.26 Score=53.93 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHhHH
Q 007365 180 RDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ll 198 (606)
+.+|+++|.|+|||+++.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999996543
No 327
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.34 E-value=0.24 Score=52.47 Aligned_cols=134 Identities=16% Similarity=0.081 Sum_probs=72.9
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
+..+-..|+++.-..-.|.. .|.+=.|||||...++-+. .+....+. -+++|.+=|+.|+.++...+.
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~knPd----------~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHSKNPD----------SRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhcCCCC----------ceEEEEeehHHHHHHHHHHHH
Confidence 34456678777655555544 5677789999985333222 22222111 249999999999999999998
Q ss_pred Hhhhc-------CC-cEEEEEECCCChHHHHHHHhcCC---cEEEecH----HHHHHHHHhccccccceeEEEEeccccc
Q 007365 242 KFSYQ-------TG-VKVVVAYGGAPINQQLRELERGV---DILVATP----GRLVDLLERARVSLQMIRYLALDEADRM 306 (606)
Q Consensus 242 ~~~~~-------~~-~~~~~~~gg~~~~~~~~~l~~~~---~Ilv~Tp----~~L~~~l~~~~~~l~~~~~lVlDEah~~ 306 (606)
+|+.. ++ +-++..-||.+..-.......-| .+-+.-- .-+...+-....++.-+++|.+||++-.
T Consensus 228 ~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDF 307 (660)
T COG3972 228 EFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDF 307 (660)
T ss_pred HHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccC
Confidence 88621 12 22222334544332221111111 2222211 1122222222334777899999999964
Q ss_pred c
Q 007365 307 L 307 (606)
Q Consensus 307 ~ 307 (606)
-
T Consensus 308 P 308 (660)
T COG3972 308 P 308 (660)
T ss_pred C
Confidence 3
No 328
>PTZ00146 fibrillarin; Provisional
Probab=94.33 E-value=4.7 Score=40.72 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=23.5
Q ss_pred CCCCCHHHHhHHHHHhcC--------CCEEEEccCCCchhHHhHHH
Q 007365 162 YVKPTPVQRHAIPISVAG--------RDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~--------~d~li~a~TGsGKT~a~llp 199 (606)
|....|++.+.-.+|+.+ .+.++-.-+|+|=|+..+..
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAd 152 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSD 152 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHH
Confidence 555667777766666544 24566666888877654443
No 329
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.32 E-value=0.68 Score=51.64 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=48.1
Q ss_pred CCHHHHhHHHHHhc---CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007365 165 PTPVQRHAIPISVA---GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 165 p~~~Q~~ai~~i~~---~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
|.|.-.+-|..++. .+-.++.+|-+.|||.+..+.++ .+.... +..++|++|...-+.++++.++
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f~-----------Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISFL-----------EIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHhc-----------CCeEEEECCChhhHHHHHHHHH
Confidence 45555555555443 46778899999999986544444 333211 1349999999999999999888
Q ss_pred Hhhh
Q 007365 242 KFSY 245 (606)
Q Consensus 242 ~~~~ 245 (606)
++..
T Consensus 238 ~~le 241 (752)
T PHA03333 238 TVVH 241 (752)
T ss_pred HHHH
Confidence 8765
No 330
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.24 E-value=0.12 Score=53.14 Aligned_cols=65 Identities=28% Similarity=0.283 Sum_probs=42.6
Q ss_pred HHHHhCCCCCCCHHHHhHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHH
Q 007365 155 LNIRRCKYVKPTPVQRHAIPI-SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTREL 232 (606)
Q Consensus 155 ~~l~~~~~~~p~~~Q~~ai~~-i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~L 232 (606)
+.+...++ +++.|.+.+.. +..+++++++++||||||+ ++..++..+..... ..+++++-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~~----------~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQDP----------TERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcCC----------CceEEEEcCCCcc
Confidence 34444444 56778888764 4567899999999999997 45555544421111 1247888888877
No 331
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.24 E-value=0.076 Score=52.83 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=39.2
Q ss_pred CCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhh
Q 007365 136 NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQ 208 (606)
Q Consensus 136 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~ 208 (606)
.+|..+.+|+++++++.+.+.+.. ..-=++|.+|||||||++ +..++.++.+..
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 567788899999999877663321 122378899999999996 667777776553
No 332
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.22 E-value=0.21 Score=56.68 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=63.2
Q ss_pred CceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-ccccCCCCCCccEEE
Q 007365 401 QSLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLDIPHVAHVV 474 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~~~GlDip~v~~VI 474 (606)
..+++|.++|+.-|..+++.++. .++.+..+||+++..+|..+++...+|+..|+|+|. .+...+.+.++.+||
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 45699999999999888776654 378899999999999999999999999999999994 455667788888877
No 333
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.22 E-value=0.097 Score=58.28 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=25.6
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChH
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPK 341 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~ 341 (606)
....+++||||+|+|... ....++..+..+ +... +++|.+|-+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~----a~naLLKtLEep-p~~~-ifIlatt~~~ 160 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG----AFNALLKTLEEP-PAHV-IFILATTEPH 160 (559)
T ss_pred cCCeEEEEEECcccCCHH----HHHHHHHHhcCC-CCCe-EEEEEeCChh
Confidence 456789999999987543 344555555433 2333 3444445443
No 334
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.17 Score=52.43 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 007365 180 RDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~l 197 (606)
.++|+.+|.|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 579999999999998543
No 335
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.21 E-value=0.21 Score=46.05 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=24.3
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
...+++||||||.|.... ...+.++++.- +....++|+|..
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEep----p~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEP----PENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHST----TTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCC----CCCEEEEEEECC
Confidence 568899999999986542 34455555543 444545554443
No 336
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.06 Score=55.97 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=18.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
..++|+.+|||||||+.+ --|++++
T Consensus 226 KSNvLllGPtGsGKTlla--qTLAr~l 250 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLA--QTLARVL 250 (564)
T ss_pred cccEEEECCCCCchhHHH--HHHHHHh
Confidence 357999999999999843 2344444
No 337
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.15 E-value=0.48 Score=46.43 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=33.2
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
+..+.-+++.+++|+|||+..+..+. .+.+.. ..+++++ +-+-..++.+.+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~-~~~~~g------------~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAY-GFLQNG------------YSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH-HHHhCC------------CcEEEEe-CCCCHHHHHHHHHHh
Confidence 34567899999999999995433333 333221 1267777 444455666666554
No 338
>PLN03025 replication factor C subunit; Provisional
Probab=94.15 E-value=0.53 Score=48.60 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHh
Q 007365 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
.++++++|+|+|||..+
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999853
No 339
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.14 E-value=0.39 Score=46.92 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=31.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+..+++.+++|+|||+.++..+.+.+ +.. -.+++++- -+.+.++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g------------~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-RDG------------DPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-hcC------------CeEEEEEc-cCCHHHHHHHHHHh
Confidence 457889999999999985444343333 221 12555553 44556666665554
No 340
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.4 Score=53.69 Aligned_cols=44 Identities=14% Similarity=0.351 Sum_probs=25.1
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChH
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPK 341 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~ 341 (606)
...++++||||+|+|.... ...+++.+..+ +....+| |.+|-+.
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEP-P~~~~fI-L~Ttd~~ 165 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA----FNAMLKTLEEP-PEYLKFV-LATTDPQ 165 (618)
T ss_pred cCCceEEEEEChhhCCHHH----HHHHHHhcccC-CCCeEEE-EEECCch
Confidence 3468899999999886544 33444444332 3344444 4445444
No 341
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.04 E-value=0.78 Score=41.98 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=36.6
Q ss_pred ccceeEEEEecccccccCCC--HHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHH
Q 007365 292 LQMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS 348 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf--~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~ 348 (606)
...+++|||||+=..++.++ .+++..+++.. |...-+|+..-..|+++..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r----p~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAK----PEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC----CCCCEEEEECCCCCHHHHHhCc
Confidence 46789999999988777764 34555555543 5556677777778887765554
No 342
>PRK05973 replicative DNA helicase; Provisional
Probab=94.03 E-value=0.18 Score=49.34 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=39.9
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+||..+ ..--+..+.-++|.|++|+|||+..+..+...+. .. -.+++++- -+-..|+.+.+..+
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~G------------e~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SG------------RTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cC------------CeEEEEEE-eCCHHHHHHHHHHc
Confidence 3555332 3344556678899999999999965555444332 21 12666643 34467777777776
No 343
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.01 E-value=0.57 Score=43.92 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=55.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCC
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAP 259 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~ 259 (606)
+-.++++|+.||||...+.-+- ++... +-++++..|-..- ++ +...+.-.-|..
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~-~~~~~------------g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~ 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRAR-RYKEA------------GMKVLVFKPAIDT---------RY----GVGKVSSRIGLS 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHH-HHHHc------------CCeEEEEeccccc---------cc----ccceeeeccCCc
Confidence 3468899999999995332222 22111 1238888773210 11 122222222222
Q ss_pred hHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007365 260 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 260 ~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
-..++|-.+..+.+.+....... .++.|++|||+= ++...-.++.++...
T Consensus 59 ----------~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF-~~~~~v~~l~~lad~ 108 (201)
T COG1435 59 ----------SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF-FDEELVYVLNELADR 108 (201)
T ss_pred ----------ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHh-CCHHHHHHHHHHHhh
Confidence 13567777777877776543222 278999999994 333233344444443
No 344
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.01 E-value=0.26 Score=48.56 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=37.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
.+..+++.+++|+|||+..+..+...+.+.. .+|+++ +-+-..|+.+.+..|.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-------------~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------------cEEEEE-eeCCHHHHHHHHHHhC
Confidence 3578999999999999966555555442221 277776 5677788888887764
No 345
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.89 E-value=0.42 Score=48.45 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 007365 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
+.++++.+|+|+|||+++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999865
No 346
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.88 E-value=0.35 Score=55.31 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHh
Q 007365 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
..+++.+|+|+|||+.+
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999853
No 347
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.84 E-value=0.19 Score=51.32 Aligned_cols=58 Identities=28% Similarity=0.400 Sum_probs=37.2
Q ss_pred CCHHHHhHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHH
Q 007365 165 PTPVQRHAIPI-SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELS 233 (606)
Q Consensus 165 p~~~Q~~ai~~-i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La 233 (606)
+++-|...+.. +..+++++++++||||||+. +-.++..+..... .-+++++-.+.||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~----------~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKNDP----------TDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccCC----------CceEEEECCchhhc
Confidence 45556666654 45568999999999999983 4444444432111 12488888888873
No 348
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.84 E-value=0.3 Score=48.89 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCHHHHhHHHHHh----cCC-CEEEEccCCCchhHHh
Q 007365 164 KPTPVQRHAIPISV----AGR-DLMACAQTGSGKTAAF 196 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~----~~~-d~li~a~TGsGKT~a~ 196 (606)
-+++.+++++..+. .+. .+++.+++|+|||+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 35666677776543 223 5889999999999843
No 349
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.82 E-value=1.5 Score=46.90 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHhH
Q 007365 180 RDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~l 197 (606)
..+++++++|+|||++..
T Consensus 101 ~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998543
No 350
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.58 Score=49.93 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=24.3
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
....++||+||+|+|... ....++..+..+ ++. -+++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~~----~~~~LLk~LEep-~~~-t~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA----AFNAFLKTLEEP-PPH-AIFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHH----HHHHHHHHHhcC-CCC-eEEEEEeC
Confidence 456789999999998643 344555555433 222 23444444
No 351
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.76 E-value=1.7 Score=40.17 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=29.4
Q ss_pred cceeEEEEecccccc-cCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhh
Q 007365 293 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFL 351 (606)
Q Consensus 293 ~~~~~lVlDEah~~~-~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l 351 (606)
...++||+|....+. +......+..+.... ....-++.++|+...+....+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~----~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVV----KPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhc----CCCeEEEEEECCCChHHHHHHHHHH
Confidence 456789999988643 111223333332222 2344566677776665555555554
No 352
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.76 E-value=0.3 Score=57.48 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=63.4
Q ss_pred CceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-ccccCCCCCCccEEE
Q 007365 401 QSLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLDIPHVAHVV 474 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~~~GlDip~v~~VI 474 (606)
..+++|.++|..-|..+++.++. .++.+..+++..+..++.++++.++.|+.+|||+|. .+...+.+.++.+||
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 45799999999999998887765 356777899999999999999999999999999994 666678888888877
No 353
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.74 E-value=0.28 Score=52.01 Aligned_cols=47 Identities=19% Similarity=0.425 Sum_probs=26.5
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHH
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ 344 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~ 344 (606)
....+++||||+|+|.... ...+++.+..+ +.. .++++.+|-+..+.
T Consensus 115 ~~~~kViiIDead~m~~~a----anaLLk~LEep-~~~-~~fIL~a~~~~~ll 161 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA----ANALLKAVEEP-PPR-TVWLLCAPSPEDVL 161 (394)
T ss_pred cCCcEEEEEechhhcCHHH----HHHHHHHhhcC-CCC-CeEEEEECChHHCh
Confidence 3567899999999986532 23344444333 233 34555555454433
No 354
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.60 E-value=0.36 Score=52.26 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=33.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
+.-+++.+++|+|||+..+.. +..+.+. +-++|+++ +.+...|+...++++.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~-a~~~a~~------------g~~vlYvs-~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQV-AARLAAA------------GGKVLYVS-GEESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHH-HHHHHhc------------CCeEEEEE-ccccHHHHHHHHHHcC
Confidence 467899999999999854333 3333221 11377776 4566778877777653
No 355
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.54 E-value=0.45 Score=53.26 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhHH
Q 007365 181 DLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ll 198 (606)
-.|+++|.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999996543
No 356
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.53 E-value=0.4 Score=47.07 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
+.-+++.+++|+|||+..+..+...+... -.++++.- .+-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g-------------~~~~y~~~-e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQG-------------KKVYVITT-ENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCC-------------CEEEEEEc-CCCHHHHHHHHHHC
Confidence 46789999999999985544444333211 12555544 45556677777765
No 357
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.47 E-value=1.5 Score=46.08 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=62.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCC
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGA 258 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~ 258 (606)
.+.+-+.++.|+|||+ ++-++-..+..+ +++ . +..-+...++++.+.++. ....
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~~---~k~---R--------~HFh~Fm~~vh~~l~~~~----------~~~~ 115 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPIK---RKR---R--------VHFHEFMLDVHSRLHQLR----------GQDD 115 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCcc---ccc---c--------ccccHHHHHHHHHHHHHh----------CCCc
Confidence 4789999999999998 333332222111 100 0 133466777777777753 0111
Q ss_pred ChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 259 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 259 ~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
+.... .+. ..+...+|.|||.|- -|.+=...+..++..+- .....+|+.|-+
T Consensus 116 ~l~~v------------------a~~------l~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~---~~gvvlVaTSN~ 167 (362)
T PF03969_consen 116 PLPQV------------------ADE------LAKESRLLCFDEFQV-TDIADAMILKRLFEALF---KRGVVLVATSNR 167 (362)
T ss_pred cHHHH------------------HHH------HHhcCCEEEEeeeec-cchhHHHHHHHHHHHHH---HCCCEEEecCCC
Confidence 11111 111 134456899999993 34333455666666652 334567888888
Q ss_pred ChHHH
Q 007365 339 FPKEI 343 (606)
Q Consensus 339 ~~~~i 343 (606)
.|.++
T Consensus 168 ~P~~L 172 (362)
T PF03969_consen 168 PPEDL 172 (362)
T ss_pred ChHHH
Confidence 88764
No 358
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.38 E-value=0.67 Score=47.89 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=26.3
Q ss_pred CCHHHHhHHHHHhcC-----CCEEEEccCCCchhHHhHHH
Q 007365 165 PTPVQRHAIPISVAG-----RDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~-----~d~li~a~TGsGKT~a~llp 199 (606)
++|+|...+..+... .-+++.+|.|+|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 368888888776643 35889999999999865433
No 359
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.36 E-value=0.2 Score=52.69 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=32.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+.-+++.+++|+|||+..+. ++..+.+.. -.++++.- -+...|+...+.++
T Consensus 81 ~GslvLI~G~pG~GKStLllq-~a~~~a~~g------------~~VlYvs~-EEs~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQ-VAARLAKRG------------GKVLYVSG-EESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHH-HHHHHHhcC------------CeEEEEEC-CcCHHHHHHHHHHc
Confidence 346789999999999985333 333333221 13777764 35567777766665
No 360
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.33 E-value=0.067 Score=49.96 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHHhcCCcEEEecHHHHHHHHHhcccc--ccceeEEEEeccccccc
Q 007365 264 LRELERGVDILVATPGRLVDLLERARVS--LQMIRYLALDEADRMLD 308 (606)
Q Consensus 264 ~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~--l~~~~~lVlDEah~~~~ 308 (606)
.+.....++|||+++..|++...+..+. ...-.+|||||||.+.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3444556899999999998765554432 23446899999998765
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.33 E-value=1.3 Score=46.94 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=30.7
Q ss_pred cceeEEEEecccccc-cCCCHHHHHHHHHhcCCCCCCCceEEEEeccChH-HHHHHHHHh
Q 007365 293 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPK-EIQKLASDF 350 (606)
Q Consensus 293 ~~~~~lVlDEah~~~-~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~-~i~~l~~~~ 350 (606)
..+++||+|=+-++. +..-...+..++..+... .+...++.+|||... .+...+..|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~-~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEK-DSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCC-CCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 457889999766542 211223333333333111 123457888999865 555555554
No 362
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=0.55 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.094 Sum_probs=25.9
Q ss_pred CCHHHHhHHHHHhc--C---CCEEEEccCCCchhHHhHHH
Q 007365 165 PTPVQRHAIPISVA--G---RDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 165 p~~~Q~~ai~~i~~--~---~d~li~a~TGsGKT~a~llp 199 (606)
++|+|...+..+.. + .-+++.+|.|+||+..+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~ 41 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHL 41 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHH
Confidence 36788888876654 2 46789999999999865433
No 363
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.28 E-value=0.17 Score=51.26 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHhH
Q 007365 179 GRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~l 197 (606)
++.+++++|||+|||++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999998543
No 364
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.28 E-value=1.4 Score=47.19 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=16.0
Q ss_pred CCEEEEccCCCchhHHhHHHH
Q 007365 180 RDLMACAQTGSGKTAAFCFPI 200 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpi 200 (606)
..+++++++|+|||++..--+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 357889999999999654333
No 365
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.23 E-value=0.41 Score=52.07 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHhHH
Q 007365 181 DLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ll 198 (606)
.+|+++|+|+|||+.+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986543
No 366
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.15 E-value=0.19 Score=47.86 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=25.4
Q ss_pred ceeEEEEecccccccCCCH--HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHH
Q 007365 294 MIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASD 349 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~gf~--~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~ 349 (606)
.-.+|||||||..+..... .....+++.+........-++++|-. +..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHHH
Confidence 4568999999998765422 22334444443332334455655554 4444444444
No 367
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.01 E-value=0.79 Score=46.96 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=18.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
++.+++.+++|+|||.. +.++...+.
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999984 334444444
No 368
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.01 E-value=0.33 Score=53.88 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHhHH
Q 007365 180 RDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ll 198 (606)
+-+|+++|.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999996543
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.00 E-value=1.9 Score=44.41 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=34.7
Q ss_pred ccceeEEEEeccccccc-CCCHHHHHHHHHhcC--CCCCCCceEEEEeccChHHHHHHHHHhh
Q 007365 292 LQMIRYLALDEADRMLD-MGFEPQIRKIVQQMD--MPPPGVRQTMLFSATFPKEIQKLASDFL 351 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~-~gf~~~i~~i~~~l~--~~~~~~~q~ll~SAT~~~~i~~l~~~~l 351 (606)
..++++||+|=+-++-. .....++.++...+. .+..+...++.++||...+....+..|.
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 35678899998877542 223345566554432 1223344578899997554444455554
No 370
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.99 E-value=0.4 Score=45.25 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=20.6
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCC
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 325 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~ 325 (606)
....++|||||+|+|.. .....++..+..+
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le~~ 123 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLEEP 123 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhcCC
Confidence 45678999999999764 3345566666543
No 371
>PRK10867 signal recognition particle protein; Provisional
Probab=92.96 E-value=1.8 Score=46.38 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHhHH
Q 007365 180 RDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ll 198 (606)
.-+++++++|+|||++..-
T Consensus 101 ~vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 3578899999999986443
No 372
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.93 E-value=0.59 Score=46.01 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=18.7
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHH
Q 007365 177 VAGRDLMACAQTGSGKTAAFCFPIIS 202 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~ 202 (606)
..+.-+++.|++|+|||...+..+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~ 36 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAEN 36 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34567899999999999854433333
No 373
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.90 E-value=0.62 Score=50.48 Aligned_cols=150 Identities=10% Similarity=0.069 Sum_probs=81.1
Q ss_pred CCCHHHHhHHHHHhc------C----CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHH
Q 007365 164 KPTPVQRHAIPISVA------G----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELS 233 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~------~----~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La 233 (606)
.+-|+|+-++-.++- + +..+|..+-+-|||..+..-++..++-.. ..+-.+.|++|+.+-+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---------~~~~~~~i~A~s~~qa 131 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---------RSGAGIYILAPSVEQA 131 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---------hcCCcEEEEeccHHHH
Confidence 578999999988762 1 45788999999999744322222222221 1122499999999999
Q ss_pred HHHHHHHHHhhhcCC-cEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh--ccccccceeEEEEecccccccCC
Q 007365 234 SQIHDEAKKFSYQTG-VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER--ARVSLQMIRYLALDEADRMLDMG 310 (606)
Q Consensus 234 ~Qi~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~--~~~~l~~~~~lVlDEah~~~~~g 310 (606)
.+.+..++....... ++..+ ........|.+.-....+..+.. ...+-.+..+.|+||.|...+.+
T Consensus 132 ~~~F~~ar~mv~~~~~l~~~~-----------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~ 200 (546)
T COG4626 132 ANSFNPARDMVKRDDDLRDLC-----------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE 200 (546)
T ss_pred HHhhHHHHHHHHhCcchhhhh-----------ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH
Confidence 999888887543322 00000 00000011222111111222222 22233456789999999866542
Q ss_pred CHHHHHHHHHhcCCCCCCCceEEEEec
Q 007365 311 FEPQIRKIVQQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 311 f~~~i~~i~~~l~~~~~~~~q~ll~SA 337 (606)
..+..+..-+.. .+..+++..|-
T Consensus 201 --~~~~~~~~g~~a--r~~~l~~~ITT 223 (546)
T COG4626 201 --DMYSEAKGGLGA--RPEGLVVYITT 223 (546)
T ss_pred --HHHHHHHhhhcc--CcCceEEEEec
Confidence 445555444422 34455555543
No 374
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.86 E-value=0.31 Score=56.45 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=51.9
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007365 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
..++|-|++|+.. ....++|.|..|||||.+.+.-+. +++......+ -.+|+++-|+..|..+.+.+.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria-~Li~~~~i~P--------~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIA-HLIAEKNVAP--------WNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHH-HHHHcCCCCH--------HHeeeeeccHHHHHHHHHHHHH
Confidence 3589999999964 356799999999999997544444 4443321111 1399999999999999888887
Q ss_pred hh
Q 007365 243 FS 244 (606)
Q Consensus 243 ~~ 244 (606)
+.
T Consensus 72 ~~ 73 (726)
T TIGR01073 72 LL 73 (726)
T ss_pred Hh
Confidence 64
No 375
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.81 E-value=0.3 Score=55.34 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=79.9
Q ss_pred EEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-CCCcEEeeCccCHHHHHHHHHhccCCC
Q 007365 373 VEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQERELALRSFKSGK 451 (606)
Q Consensus 373 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~g~ 451 (606)
+.-+.-+.|.+..++++...+.. +..+||.++.+.....+.+.|+.. +.++..+|+++++.+|.+...+..+|+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~ 296 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQ-----GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGE 296 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHc-----CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCC
Confidence 34567789999999999998875 667999999999888888887654 788999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccEEE
Q 007365 452 TPILVATDVAARGLDIPHVAHVV 474 (606)
Q Consensus 452 ~~iLVaT~v~~~GlDip~v~~VI 474 (606)
.+|+|-|..+- =+-++++-.+|
T Consensus 297 ~~vVIGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 297 ARVVIGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred ceEEEEechhh-cCchhhccEEE
Confidence 99999995432 23556777766
No 376
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.35 Score=50.04 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHH
Q 007365 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+++|+.+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7899999999999984
No 377
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.68 E-value=0.31 Score=53.67 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHH
Q 007365 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+|+.+|+|+|||+.
T Consensus 89 ~giLL~GppGtGKT~l 104 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLL 104 (495)
T ss_pred CcEEEECCCCCCHHHH
Confidence 6799999999999984
No 378
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.63 E-value=0.6 Score=49.67 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=29.5
Q ss_pred CCCccccCCCCHHHHHHHHhC---CCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHH
Q 007365 140 PVNTFAEIDLGEELNLNIRRC---KYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a 195 (606)
|..+|.+++--+...+.++.. .+..|.-++... +...+.+++.+|+|+|||+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHH
Confidence 445677775444444444322 122222222211 12357899999999999984
No 379
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.63 E-value=0.66 Score=51.66 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=25.3
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccCh
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 340 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~ 340 (606)
....+++|+||+|.|.. .....++..+..+ +. .-+++|.+|=+
T Consensus 117 ~~~~KVvIIDEa~~Ls~----~a~naLLK~LEep-p~-~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN----SAFNALLKTIEEP-PP-YIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCH----HHHHHHHHhhccC-CC-CEEEEEecCCh
Confidence 45678999999998754 3444555555433 23 33444544533
No 380
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.62 E-value=0.56 Score=49.86 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 007365 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
-+.+++.+|+|+|||+.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 36799999999999984
No 381
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.56 E-value=0.77 Score=46.99 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 007365 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
..+|+.+|.|+|||..
T Consensus 163 pSmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTL 178 (554)
T ss_pred CceEEecCCCCchHHH
Confidence 5789999999999984
No 382
>PRK04195 replication factor C large subunit; Provisional
Probab=92.40 E-value=0.83 Score=50.10 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 007365 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
.+.+|+.+|+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999843
No 383
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.38 E-value=1.6 Score=44.89 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.1
Q ss_pred CEEEEccCCCchhHHh
Q 007365 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
.+++.++.|+|||++.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999853
No 384
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.25 E-value=1.3 Score=43.42 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=20.1
Q ss_pred HHhcCC-CEEEEccCCCchhHHhHHHHHHHH
Q 007365 175 ISVAGR-DLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 175 ~i~~~~-d~li~a~TGsGKT~a~llpil~~l 204 (606)
.+..++ -+.++++-|||||++.- ++++.+
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 344455 67889999999999755 444433
No 385
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.23 E-value=0.47 Score=52.05 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=19.6
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCC
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 324 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~ 324 (606)
+...++|||||+|.|.. ..+..++..+..
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~LEe 142 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTLEE 142 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHHHh
Confidence 45678999999998743 345555555543
No 386
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.18 E-value=0.71 Score=55.70 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=61.8
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-ccccCCCCCCccEEE
Q 007365 401 QSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLDIPHVAHVV 474 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~~~GlDip~v~~VI 474 (606)
..++||.|+|..-|..+++.++.. ++.+..+++..+..++.++++..+.|..+|||+|. .+...+.+.++.+||
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 567999999999999988877642 45677899999999999999999999999999994 555566777888777
No 387
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.15 E-value=0.44 Score=54.77 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=50.9
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----C-CCcEE-eeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007365 401 QSLTLVFVETKKGADALEHWLYMN----G-FPATT-IHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~-~~~~~-lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
..++++.++|..-+.+.++.|... + +.+.. +|+.|+..++++++++|.+|..+|||+|..
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 678999999999888888887654 2 44433 999999999999999999999999999964
No 388
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.05 E-value=0.69 Score=48.66 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=17.2
Q ss_pred HhcCCCEEEEccCCCchhHH
Q 007365 176 SVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a 195 (606)
+-.|+.+++.+++|+|||+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 34578999999999999984
No 389
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.04 E-value=0.43 Score=49.01 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=25.4
Q ss_pred CCCHHHHhHHHHHh----cC---CCEEEEccCCCchhHHhHH
Q 007365 164 KPTPVQRHAIPISV----AG---RDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~----~~---~d~li~a~TGsGKT~a~ll 198 (606)
.++|+|...+..+. .+ .-++++++.|.||+..+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 46778877776544 33 3689999999999985443
No 390
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=92.04 E-value=9 Score=39.60 Aligned_cols=227 Identities=15% Similarity=0.135 Sum_probs=111.3
Q ss_pred CCCchhHHhHHHHHHHHHhhhc----ccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHH
Q 007365 188 TGSGKTAAFCFPIISGIMREQY----VQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQ 263 (606)
Q Consensus 188 TGsGKT~a~llpil~~l~~~~~----~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~ 263 (606)
=|+|||-. .+.++..+.+... ..+..+.+..+ ..+++.+.. -+.++=+|-..++.... +.++.+..-...-
T Consensus 46 GGTGKTP~-v~~L~~~L~~~G~~~~IlSRGYg~~~~~-~~~~v~~~~-~~~~~GDEp~lla~~~~--~~V~V~~dR~~~~ 120 (326)
T PF02606_consen 46 GGTGKTPL-VIWLARLLQARGYRPAILSRGYGRKSKG-EPILVSDGS-DAEEVGDEPLLLARKLP--VPVIVGPDRVAAA 120 (326)
T ss_pred CCCCchHH-HHHHHHHHHhcCCceEEEcCCCCCCCCC-CeEEEeCCC-ChhhhcCHHHHHHHhcC--CcEEEeCcHHHHH
Confidence 48999973 4555555544321 11211111111 256666655 67777777766666555 3344444433332
Q ss_pred HHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEEecccccc-----cCCCHHHHHHHHHhcCCCCCCCceEEEEec
Q 007365 264 LRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-----DMGFEPQIRKIVQQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 264 ~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~-----~~gf~~~i~~i~~~l~~~~~~~~q~ll~SA 337 (606)
...+.. +++|||.- |-+++..+ -.++++|++|-.+-+. -.|. +++-...+. ..-.++++.
T Consensus 121 ~~~~~~~~~dviilD-----DGfQh~~L-~rDl~Ivl~D~~~~~gng~lLPaG~---LREp~~~l~-----rAD~vi~~~ 186 (326)
T PF02606_consen 121 RAALKEFPADVIILD-----DGFQHRRL-KRDLDIVLVDADRPFGNGFLLPAGP---LREPLSALK-----RADAVIVTG 186 (326)
T ss_pred HHHHHHCCCCEEEEc-----CCcccccc-cCCcEEEEEeCCCCCcCCccCCCCc---ccCChhHhC-----cccEEEEcC
Confidence 333332 48998876 44444442 4778999999755322 2221 111122221 112444443
Q ss_pred cChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHH
Q 007365 338 TFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADAL 417 (606)
Q Consensus 338 T~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l 417 (606)
................+++... +... ....+...-.. .-+..+++.||- ...-+.+
T Consensus 187 ~~~~~~~~~~~~~~~~p~~~~~-------------~~~~----~~~~~~~~~~~------~l~~~~v~a~sG-Ig~P~~F 242 (326)
T PF02606_consen 187 CDASDPAIEKAIRPGKPIFSAR-------------LKPE----GLRNLNTGSIE------PLKGKPVLAFSG-IGNPERF 242 (326)
T ss_pred CCcchhHHHHhhhcCCceEEEE-------------EEec----ccccccccchh------hccCCeeEEEEE-cCChHHH
Confidence 3322211111111111221110 0000 00000000000 012556777775 4555677
Q ss_pred HHHHHhCCCCcEEe-----eCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007365 418 EHWLYMNGFPATTI-----HGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 418 ~~~L~~~~~~~~~l-----hg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
.+.|+..|+.+... |-..+..+-+.+....+... +||+|.
T Consensus 243 ~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 243 FDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred HHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 88888888876632 66788888888888776655 888884
No 391
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.03 E-value=0.045 Score=48.86 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.3
Q ss_pred CEEEEccCCCchhHH
Q 007365 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
++|+.+++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 479999999999984
No 392
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.99 E-value=1 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=17.9
Q ss_pred CC-EEEEccCCCchhHHhHHHHHHHHH
Q 007365 180 RD-LMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 180 ~d-~li~a~TGsGKT~a~llpil~~l~ 205 (606)
.. +|+.+|.|+|||.++. .+...+.
T Consensus 24 ~halL~~Gp~G~Gktt~a~-~lA~~l~ 49 (325)
T COG0470 24 PHALLFYGPPGVGKTTAAL-ALAKELL 49 (325)
T ss_pred CceeeeeCCCCCCHHHHHH-HHHHHHh
Confidence 45 9999999999999644 3333343
No 393
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.42 Score=52.04 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=28.5
Q ss_pred ceeEEEEecccccccC----C---CHHHHHHHHHhcCCCCCCCceEEEEeccChHH
Q 007365 294 MIRYLALDEADRMLDM----G---FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKE 342 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~----g---f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~ 342 (606)
.-.+|.|||+|-|... + -...+..++..++-. ...+++.++-||-.++
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-EERRGVYVIAATNRPD 658 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-ccccceEEEeecCCCc
Confidence 3457999999987632 1 223444555555332 2345677888996544
No 394
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.96 E-value=0.42 Score=49.94 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=23.8
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~S 336 (606)
....++|||||||.|... ....+++.+..+ +....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~----aanaLLk~LEEp-p~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN----AANAILKTLEEP-PARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH----HHHHHHHHHhcC-CCCceEEEEE
Confidence 356789999999998543 333344444433 3444455554
No 395
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.86 E-value=0.97 Score=49.44 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=19.3
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCC
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 325 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~ 325 (606)
.....++|+||||.|... ....++..+..+
T Consensus 117 ~~~~KVvIIDEad~Lt~~----a~naLLk~LEep 146 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE----AFNALLKTLEEP 146 (486)
T ss_pred cCCeeEEEEEChhhcCHH----HHHHHHHHHhcC
Confidence 456789999999987543 334445555433
No 396
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.84 E-value=0.46 Score=53.53 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHhHH
Q 007365 180 RDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ll 198 (606)
..+|+.++.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4579999999999996543
No 397
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.83 E-value=1.7 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=18.8
Q ss_pred hHHHHHhc--CCCEEEEccCCCchhHHh
Q 007365 171 HAIPISVA--GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 171 ~ai~~i~~--~~d~li~a~TGsGKT~a~ 196 (606)
+.+..+.. ..++|+.+|+|+|||..+
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 34444433 368999999999999853
No 398
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.82 E-value=0.76 Score=48.59 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHhCCCCC--CCHHHH-----hHHHHHhcCCCEEEEccCCCchhHHhH
Q 007365 148 DLGEELNLNIRRCKYVK--PTPVQR-----HAIPISVAGRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 148 ~l~~~l~~~l~~~~~~~--p~~~Q~-----~ai~~i~~~~d~li~a~TGsGKT~a~l 197 (606)
...+++.-.|...++.. ++.-|+ ..++.+..+.+++..+|+|+|||..|.
T Consensus 171 T~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 171 TLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred CHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 34455555666677642 333222 223667788999999999999997554
No 399
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.77 E-value=0.18 Score=49.33 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=12.3
Q ss_pred EEEEccCCCchhHH
Q 007365 182 LMACAQTGSGKTAA 195 (606)
Q Consensus 182 ~li~a~TGsGKT~a 195 (606)
++|.+..|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999994
No 400
>PHA00012 I assembly protein
Probab=91.75 E-value=3.4 Score=42.11 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=18.8
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHh
Q 007365 182 LMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 182 ~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
-++.+..|+|||+.++.-|+..+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999999877655554443
No 401
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.74 E-value=0.43 Score=49.42 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=30.0
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHH
Q 007365 175 ISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELS 233 (606)
Q Consensus 175 ~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La 233 (606)
++..+.+++++++||||||+ ++-.++..+-.. -+++++--+.||.
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~ip~~-------------~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREIPAI-------------ERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhCCCC-------------CeEEEecCCCccc
Confidence 34567999999999999998 344444443221 1377776666664
No 402
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.73 E-value=0.21 Score=51.94 Aligned_cols=46 Identities=30% Similarity=0.373 Sum_probs=30.8
Q ss_pred HHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHH
Q 007365 174 PISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELS 233 (606)
Q Consensus 174 ~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La 233 (606)
.++..+.+++++++||||||+. +-.++..+-. ..+++.+-.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~-------------~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP-------------QERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHcccCC-------------CCCEEEECCCcccc
Confidence 3455679999999999999983 4444433311 11377788888774
No 403
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=91.69 E-value=0.56 Score=46.99 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCCCCCHHHHhHHHHHhcC
Q 007365 152 ELNLNIRRCKYVKPTPVQRHAIPISVAG 179 (606)
Q Consensus 152 ~l~~~l~~~~~~~p~~~Q~~ai~~i~~~ 179 (606)
.|++.|+...|.-+-.-|...-.++.++
T Consensus 7 ~lvdslk~l~~qg~~~k~~~lsral~ag 34 (465)
T KOG3973|consen 7 YLVDSLKALSFQGHCQKQENLSRALMAG 34 (465)
T ss_pred HHHHHHHHhccCCcccchhhHHHHHHcC
Confidence 5667777777766655555544454443
No 404
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.63 E-value=4.1 Score=41.59 Aligned_cols=135 Identities=20% Similarity=0.301 Sum_probs=68.9
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEE-ccc-hHHHHHHHHHHHHhhhcCCcEEEEE-ECC
Q 007365 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALIL-APT-RELSSQIHDEAKKFSYQTGVKVVVA-YGG 257 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil-~Pt-r~La~Qi~~~~~~~~~~~~~~~~~~-~gg 257 (606)
.+++++-.|+|||++ +.=|+++++... .++|+. +.| |+=| .++++.|....++.++.- +|.
T Consensus 141 Vil~vGVNG~GKTTT--IaKLA~~l~~~g-----------~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~~~~G~ 204 (340)
T COG0552 141 VILFVGVNGVGKTTT--IAKLAKYLKQQG-----------KSVLLAAGDTFRAAA---IEQLEVWGERLGVPVISGKEGA 204 (340)
T ss_pred EEEEEecCCCchHhH--HHHHHHHHHHCC-----------CeEEEEecchHHHHH---HHHHHHHHHHhCCeEEccCCCC
Confidence 478899999999995 334444444331 124444 333 2222 233444444457777652 333
Q ss_pred CChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccC-CCHHHHHHHHHhcCCCCCC--CceEEE
Q 007365 258 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPG--VRQTML 334 (606)
Q Consensus 258 ~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~-gf~~~i~~i~~~l~~~~~~--~~q~ll 334 (606)
.+..-. .+-++..+ -+++++|++|=|=||-.. ....++++|..-+....+. ..-++.
T Consensus 205 DpAaVa------------------fDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llv 264 (340)
T COG0552 205 DPAAVA------------------FDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLV 264 (340)
T ss_pred CcHHHH------------------HHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEE
Confidence 332211 22222221 345566666666665432 2456677776666433222 223444
Q ss_pred EeccChHHHHHHHHHhh
Q 007365 335 FSATFPKEIQKLASDFL 351 (606)
Q Consensus 335 ~SAT~~~~i~~l~~~~l 351 (606)
+=||.-.+--.-++.|-
T Consensus 265 lDAttGqnal~QAk~F~ 281 (340)
T COG0552 265 LDATTGQNALSQAKIFN 281 (340)
T ss_pred EEcccChhHHHHHHHHH
Confidence 47888666555555553
No 405
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.61 E-value=1.3 Score=48.76 Aligned_cols=40 Identities=13% Similarity=0.358 Sum_probs=24.1
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~S 336 (606)
....+++||||||+|... ....++..+..+ +....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~----A~NALLK~LEEp-p~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE----AFNALLKTLEEP-PSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH----HHHHHHHHHhhc-CCceEEEEEE
Confidence 456889999999988643 333444444333 4445455544
No 406
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.58 E-value=1.4 Score=46.43 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=24.7
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
....++|||||+|.|.. .....+++.+..+ +....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~----~aanaLLK~LEep-p~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA----NAANALLKVLEEP-PARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCH----HHHHHHHHHHhcC-CCCeEEEEEECC
Confidence 45678999999998754 3334444444332 344445555544
No 407
>PF05729 NACHT: NACHT domain
Probab=91.52 E-value=1.3 Score=40.22 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=18.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhh
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMRE 207 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~ 207 (606)
|-++|.++.|+|||+. +.-++..+...
T Consensus 1 r~l~I~G~~G~GKStl-l~~~~~~~~~~ 27 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTL-LRKLAQQLAEE 27 (166)
T ss_pred CEEEEECCCCCChHHH-HHHHHHHHHhc
Confidence 3578999999999994 33444444433
No 408
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.50 E-value=0.15 Score=54.27 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=40.1
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEE
Q 007365 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVA 254 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~ 254 (606)
+++++|+||||||.++++|-+.... ..+||+=|--|+........++. +.+|.++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~---------------~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~ 55 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP---------------GSVVVLDPKGENFELTSEHRRAL----GRKVFVF 55 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC---------------CCEEEEccchhHHHHHHHHHHHc----CCeEEEE
Confidence 4789999999999999888664321 12999999999988766665543 4455544
No 409
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.43 E-value=1.3 Score=43.13 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=33.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
+.-+++.+++|+|||...+..+...+.+. -.+++++- .+-..|+.+.+..+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g-------------~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNG-------------EKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC-------------CeEEEEEC-CCCHHHHHHHHHHcC
Confidence 56789999999999985444443333221 12666544 556788888887763
No 410
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.43 E-value=0.31 Score=45.66 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=30.4
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
.+.+++++||....+|......+..++..+. ....++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~---~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMA---KHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---hCCCEEEEEECC
Confidence 5668999999999998877777777766652 123566666554
No 411
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.39 E-value=0.64 Score=54.48 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=20.3
Q ss_pred HHhHHHHHh----cC--CCEEEEccCCCchhHHh
Q 007365 169 QRHAIPISV----AG--RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 169 Q~~ai~~i~----~~--~d~li~a~TGsGKT~a~ 196 (606)
|.+-|..+. .. .++|+.++.|+|||+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555443 32 68999999999999843
No 412
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.35 E-value=0.43 Score=44.71 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=19.7
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007365 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
+..++++++.+++|+|||..+ ..+...++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~ 73 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLA-VAIANEAIR 73 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHH-HHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHH-HHHHHHhcc
Confidence 445689999999999999853 344444544
No 413
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.34 E-value=2.9 Score=39.38 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=34.6
Q ss_pred ccceeEEEEecccccccCCCH--HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHH
Q 007365 292 LQMIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS 348 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~--~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~ 348 (606)
-..+++|||||+=..++.++. +++..++... |...-+|+.--..|.++..++.
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r----p~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNAR----PGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC----CCCCEEEEECCCCCHHHHHhCc
Confidence 356899999999988888753 3444444443 4555556555567777665554
No 414
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.30 E-value=0.24 Score=54.18 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=38.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.++++.|+||||||..+++|.+.. ... .+||+=|--||.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~~~------------s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---YPG------------SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---ccC------------CEEEEECCCcHHHHHHHHHHHC
Confidence 579999999999999999997632 110 2899999999988877766664
No 415
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.26 E-value=0.95 Score=52.45 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 007365 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+++.+|+|||||+.
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 6789999999999984
No 416
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.20 E-value=2.1 Score=44.82 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHhHHHHHh---cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007365 167 PVQRHAIPISV---AGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 167 ~~Q~~ai~~i~---~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
++-.++|+.+. .|+..+|.++.|+|||+. +.-++..+.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~ 158 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVA 158 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 34445776654 578999999999999984 333444443
No 417
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.08 E-value=1.3 Score=49.75 Aligned_cols=71 Identities=21% Similarity=0.412 Sum_probs=53.5
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+|+..++++++.+.+. ++++..++++.+..+....+ .. ..+||||| +.+.++ +++.++++
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG-IDip~V~~ 328 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG-LHIDGVKY 328 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC-CCccCCCE
Confidence 4999999999999999988774 67899999988765544333 33 47999999 555544 46788888
Q ss_pred EEEec
Q 007365 298 LALDE 302 (606)
Q Consensus 298 lVlDE 302 (606)
||.-+
T Consensus 329 VInyd 333 (572)
T PRK04537 329 VYNYD 333 (572)
T ss_pred EEEcC
Confidence 87543
No 418
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.01 E-value=1.6 Score=43.49 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=63.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccc---hHHHHHHHHHHHHhhhcCCcEEEEEE
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPT---RELSSQIHDEAKKFSYQTGVKVVVAY 255 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Pt---r~La~Qi~~~~~~~~~~~~~~~~~~~ 255 (606)
+.-+++.|.||.|||..++-.+.+...... ..+++++.= .+++..+...... +....+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~------------~~vly~SlEm~~~~l~~R~la~~s~------v~~~~i~ 80 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG------------YPVLYFSLEMSEEELAARLLARLSG------VPYNKIR 80 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS------------SEEEEEESSS-HHHHHHHHHHHHHT------STHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC------------CeEEEEcCCCCHHHHHHHHHHHhhc------chhhhhh
Confidence 456888999999999955544444333221 237777652 3333332222221 1111111
Q ss_pred CCCChHHHHHH-------HhcCCcEEE-e----cHHHHHHHHHhccccccceeEEEEecccccccC----CCHHHHHHHH
Q 007365 256 GGAPINQQLRE-------LERGVDILV-A----TPGRLVDLLERARVSLQMIRYLALDEADRMLDM----GFEPQIRKIV 319 (606)
Q Consensus 256 gg~~~~~~~~~-------l~~~~~Ilv-~----Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~----gf~~~i~~i~ 319 (606)
.+.-...++.. +.. ..+.| . |++.|...+.........+++||+|=.|.|-.. .....+..+.
T Consensus 81 ~g~l~~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~ 159 (259)
T PF03796_consen 81 SGDLSDEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEIS 159 (259)
T ss_dssp CCGCHHHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHH
Confidence 22222222222 222 23443 3 455666666544433478899999999987653 2344455554
Q ss_pred Hhc
Q 007365 320 QQM 322 (606)
Q Consensus 320 ~~l 322 (606)
..|
T Consensus 160 ~~L 162 (259)
T PF03796_consen 160 REL 162 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 419
>CHL00176 ftsH cell division protein; Validated
Probab=90.96 E-value=0.95 Score=51.14 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHH
Q 007365 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+|+.+|+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 6799999999999984
No 420
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=90.73 E-value=1 Score=48.36 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHH
Q 007365 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
.+.+++.+|+|+|||+.
T Consensus 217 p~gVLL~GPPGTGKT~L 233 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLL 233 (438)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46799999999999984
No 421
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.60 E-value=0.47 Score=47.05 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=19.5
Q ss_pred cHHHHHHHHHhccccccceeEEEEeccccccc
Q 007365 277 TPGRLVDLLERARVSLQMIRYLALDEADRMLD 308 (606)
Q Consensus 277 Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~ 308 (606)
-|+-|..+|. +++.-++|.+||+|++.-
T Consensus 90 K~gDlaaiLt----~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 90 KPGDLAAILT----NLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred ChhhHHHHHh----cCCcCCeEEEehhhhcCh
Confidence 3445555554 466677899999999754
No 422
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.60 E-value=0.43 Score=55.93 Aligned_cols=96 Identities=22% Similarity=0.231 Sum_probs=76.5
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCC
Q 007365 400 KQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP 479 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p 479 (606)
...++|||+.--...+.++..+..+++.....-+ .++-...+..|++ -..+|+-+...+-|+++-+..||+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 3678999999888888888777766655443322 3455667778876 33467778889999999999999999999
Q ss_pred CCHhHHHHHhhccccCCCcc
Q 007365 480 NDIDDYVHRIGRTGRAGKSG 499 (606)
Q Consensus 480 ~s~~~y~QRiGR~gR~g~~G 499 (606)
.++.+-.|.+||+.|.|++-
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cCchHHHhhhhhhhhccccc
Confidence 99999999999999999864
No 423
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.58 E-value=1.2 Score=48.88 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHH
Q 007365 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
.+.+|+.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 47899999999999984
No 424
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.58 E-value=1.4 Score=49.79 Aligned_cols=42 Identities=12% Similarity=0.328 Sum_probs=25.2
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccC
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF 339 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~ 339 (606)
....++|||||+|+|.. .....++..+..+ +... +++|.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LEep-p~~t-ifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEP-PSYA-IFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHhCC-CCCe-EEEEEeCC
Confidence 45788999999999864 3344455555433 2333 44455553
No 425
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.56 E-value=3.1 Score=38.64 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=35.7
Q ss_pred ccceeEEEEecccccccCCCH--HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHH
Q 007365 292 LQMIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS 348 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~--~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~ 348 (606)
-..+++|||||+=..++.++. +++..+++.. |...-+|+..-..|.++..++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r----p~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQER----PGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC----CCCCEEEEECCCCCHHHHHhCc
Confidence 357899999999988877743 3444555443 5555667666667877665554
No 426
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.55 E-value=0.65 Score=48.78 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=19.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
...++++++||||||+. +..++..+..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44688999999999994 4555555543
No 427
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.55 E-value=1.3 Score=46.68 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHH
Q 007365 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
.+.+++.+|+|+|||+.
T Consensus 156 p~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLL 172 (364)
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999984
No 428
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.42 E-value=0.72 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHH
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPII 201 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil 201 (606)
.+.-+.+.+++|||||...+..+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~ 34 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAV 34 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999996554443
No 429
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.25 E-value=0.59 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.9
Q ss_pred HHHHhcCCCEEEEccCCCchhHH
Q 007365 173 IPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 173 i~~i~~~~d~li~a~TGsGKT~a 195 (606)
+-.+..++++++.+++|+|||..
T Consensus 58 l~~l~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 58 CAGFAYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred HHHHhcCCcEEEEeCCCChHHHH
Confidence 34455689999999999999984
No 430
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.22 E-value=0.71 Score=52.40 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=25.5
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChH
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPK 341 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~ 341 (606)
....+++||||||.|... ....++..+..+ |... +++|.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~~----A~NALLKtLEEP-P~~t-ifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS----AFNALLKTLEEP-PKHV-IFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCHH----HHHHHHHHhhcC-CCce-EEEEEcCChh
Confidence 356789999999987643 444555555443 3333 3344445343
No 431
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.21 E-value=0.33 Score=54.30 Aligned_cols=56 Identities=25% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEE
Q 007365 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVA 254 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~ 254 (606)
+++++.||||||||..+++|-+...- ..+||+=|--|+....+...+++ |.+|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~---------------~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE---------------DSVVVHDIKLENYELTSGWREKQ----GQKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC---------------CCEEEEeCcHHHHHHHHHHHHHC----CCeEEEE
Confidence 57999999999999999999875431 12999999999998888777764 4455544
No 432
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.16 E-value=0.92 Score=51.49 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=35.1
Q ss_pred eeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccCh
Q 007365 295 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 340 (606)
Q Consensus 295 ~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~ 340 (606)
-=+||||.-|++.+......++.++++. |.+.+.++.|=+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~----P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHA----PENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhC----CCCeEEEEEeccCC
Confidence 3589999999999988788888888887 88888888887644
No 433
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.09 E-value=1.4 Score=50.99 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHh
Q 007365 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
.++|+.+++|+|||+.+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 68999999999999853
No 434
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.91 E-value=1.2 Score=43.16 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCchhH
Q 007365 179 GRDLMACAQTGSGKTA 194 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~ 194 (606)
.+.+++.+|.|+|||.
T Consensus 20 ~~~~~l~G~rg~GKTs 35 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTS 35 (234)
T ss_dssp SSEEEEEESTTSSHHH
T ss_pred CcEEEEEcCCcCCHHH
Confidence 3788999999999998
No 435
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=2.3 Score=45.13 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=38.0
Q ss_pred cceeEEEEecccccccCC--------CHHHHHHHHHhcCCCCCCCceEEEEecc-ChHHHHHHHHHhhcCc
Q 007365 293 QMIRYLALDEADRMLDMG--------FEPQIRKIVQQMDMPPPGVRQTMLFSAT-FPKEIQKLASDFLANY 354 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~g--------f~~~i~~i~~~l~~~~~~~~q~ll~SAT-~~~~i~~l~~~~l~~~ 354 (606)
....++++||+|.++..- .....+.++.........+-+++++.|| .|.++..-+...+...
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr 314 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKR 314 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhce
Confidence 446678899999887432 2233444444444444455588999999 4666666665544433
No 436
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=89.71 E-value=7.3 Score=36.14 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=30.4
Q ss_pred ccceeEEEEecccccccCCCH--HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHH
Q 007365 292 LQMIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS 348 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~--~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~ 348 (606)
-..+++|||||+=..++.++. .++..++... |...-+|+.--.+|+++...+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~r----p~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENR----PESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-----TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcC----CCCeEEEEECCCCCHHHHHhCC
Confidence 457899999999988888753 3455555543 4555566665667776655543
No 437
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.71 E-value=0.5 Score=50.72 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=31.0
Q ss_pred CCHHHHhHHHHHhcCC--CEEEEccCCCchhHHhHHHHHHHHHhh
Q 007365 165 PTPVQRHAIPISVAGR--DLMACAQTGSGKTAAFCFPIISGIMRE 207 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~--d~li~a~TGsGKT~a~llpil~~l~~~ 207 (606)
+.+.|...+..+++.. =+|+.+|||||||++ +..++..+...
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 4778888887776653 357799999999996 66677666543
No 438
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.69 E-value=2.3 Score=44.69 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=24.3
Q ss_pred HHHHhHHHH---HhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007365 167 PVQRHAIPI---SVAGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 167 ~~Q~~ai~~---i~~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
++=..+|.. +-.|+..+|.++.|+|||+. +..+...+.
T Consensus 154 ~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~ 194 (416)
T PRK09376 154 DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSIT 194 (416)
T ss_pred ccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHH
Confidence 344444443 34578999999999999973 333444443
No 439
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.68 E-value=6.9 Score=42.66 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=73.3
Q ss_pred cCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHH--
Q 007365 187 QTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQL-- 264 (606)
Q Consensus 187 ~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~-- 264 (606)
...+||+..-++++.+.+... ..|.+||.+-+.+-|.|++.++..| .++++.++++..+..+..
T Consensus 365 lvF~gse~~K~lA~rq~v~~g-----------~~PP~lIfVQs~eRak~L~~~L~~~---~~i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG-----------FKPPVLIFVQSKERAKQLFEELEIY---DNINVDVIHGERSQKQRDET 430 (593)
T ss_pred heeeecchhHHHHHHHHHhcc-----------CCCCeEEEEecHHHHHHHHHHhhhc---cCcceeeEecccchhHHHHH
Confidence 357888887777766554432 2355899999999999999998743 578999999986654433
Q ss_pred -HHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEEecccc
Q 007365 265 -RELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 305 (606)
Q Consensus 265 -~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~ 305 (606)
..++. ...++||| ++|.++ +++..+.+||-+..-.
T Consensus 431 ~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 431 MERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 33343 37899999 888877 6899999999977653
No 440
>PRK06904 replicative DNA helicase; Validated
Probab=89.64 E-value=2.2 Score=46.57 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=56.8
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEEC
Q 007365 177 VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYG 256 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~g 256 (606)
..+.-+|+.|.+|+|||.. .+-+...+.... +-.++|++. -.-..|+...+-... .++....+..
T Consensus 219 ~~G~LiiIaarPg~GKTaf-alnia~~~a~~~-----------g~~Vl~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~ 283 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTF-AMNLCENAAMAS-----------EKPVLVFSL-EMPAEQIMMRMLASL--SRVDQTKIRT 283 (472)
T ss_pred CCCcEEEEEeCCCCChHHH-HHHHHHHHHHhc-----------CCeEEEEec-cCCHHHHHHHHHHhh--CCCCHHHhcc
Confidence 3345678899999999984 444444443221 112666543 244555554443321 2222222222
Q ss_pred C-CChHHHH-------HHHhcCCcEEEe-----cHHHHHHHHHhccccccceeEEEEeccccccc
Q 007365 257 G-APINQQL-------RELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLD 308 (606)
Q Consensus 257 g-~~~~~~~-------~~l~~~~~Ilv~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~ 308 (606)
+ .-...++ ..+.....+.|. |+..+...+.+.......+++||+|=.+.|..
T Consensus 284 g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 284 GQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 2 1112222 223233446663 55555544433221223578999998887653
No 441
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.59 E-value=1.8 Score=43.27 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=19.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISG 203 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~ 203 (606)
.+.-+++.+++|+|||+..+..+.+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45778999999999998655544443
No 442
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.58 E-value=2.3 Score=43.73 Aligned_cols=57 Identities=11% Similarity=0.259 Sum_probs=32.2
Q ss_pred EecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 275 VATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 275 v~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
|-....+.+.+....+ ....+++|+||||.|... ....+++.+..+ | ...+|+++..
T Consensus 106 id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~----aaNaLLK~LEEP-p-~~~fILi~~~ 162 (314)
T PRK07399 106 LEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA----AANALLKTLEEP-G-NGTLILIAPS 162 (314)
T ss_pred HHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH----HHHHHHHHHhCC-C-CCeEEEEECC
Confidence 3333345555554443 357889999999998543 334445545444 3 4445555543
No 443
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=89.48 E-value=1.2 Score=47.67 Aligned_cols=70 Identities=26% Similarity=0.328 Sum_probs=53.7
Q ss_pred CcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccce
Q 007365 220 YPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMI 295 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~ 295 (606)
.|.++|.+.+..-|.-+++.|.+. +++++.++|+....+....| .. ..+|+||| +..- ..++..+|
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-----DvAg-RGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVAT-----DVAG-RGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe-----cccc-cCCCCCcc
Confidence 355999999999999999888886 78999999999876554444 33 57999999 4333 34578888
Q ss_pred eEEE
Q 007365 296 RYLA 299 (606)
Q Consensus 296 ~~lV 299 (606)
++||
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8775
No 444
>PRK13764 ATPase; Provisional
Probab=89.48 E-value=0.68 Score=51.57 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=20.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
..++++++++||||||+. +..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 457899999999999983 455555543
No 445
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.47 E-value=2 Score=46.21 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=54.8
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHH-hhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEE
Q 007365 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIM-REQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVA 254 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~-~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~ 254 (606)
+..+.-+++.|.+|+|||...+ -+...+. +.. -.+++++ .-.-..|+...+-.. ..++....+
T Consensus 191 ~~~g~liviag~pg~GKT~~al-~ia~~~a~~~g------------~~v~~fS-lEm~~~~l~~Rl~~~--~~~v~~~~~ 254 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLAL-NIAENVALREG------------KPVLFFS-LEMSAEQLGERLLAS--KSGINTGNI 254 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHH-HHHHHHHHhCC------------CcEEEEE-CCCCHHHHHHHHHHH--HcCCCHHHH
Confidence 3445678889999999998544 3443332 221 1266665 222344444333221 122222211
Q ss_pred ECCCChHHHHH-------HHhcCCcEEEe-----cHHHHHHHHHhccccccceeEEEEecccccc
Q 007365 255 YGGAPINQQLR-------ELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRML 307 (606)
Q Consensus 255 ~gg~~~~~~~~-------~l~~~~~Ilv~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~ 307 (606)
..+.-...++. .+. ...+.|. |...+...+.+-......+++||+|=.|.|.
T Consensus 255 ~~~~l~~~~~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 255 RTGRFNDSDFNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred hcCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 22221122222 222 2345553 3444444444322222358899999888765
No 446
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.41 E-value=2.2 Score=47.50 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=63.3
Q ss_pred CceEEEEEcchh----hHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-ccccCCCCCCccEEE
Q 007365 401 QSLTLVFVETKK----GADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLDIPHVAHVV 474 (606)
Q Consensus 401 ~~~~LVF~~s~~----~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~~~GlDip~v~~VI 474 (606)
+.++.+-++|-- +.+.+.++|...++.+..+.|.+...+|.+++....+|+++|+|.|. .+...+++.+..+||
T Consensus 311 G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 311 GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 556888899864 44555666677799999999999999999999999999999999995 567899999998888
No 447
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=89.34 E-value=2 Score=40.62 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=41.9
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHH
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASD 349 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~ 349 (606)
..+-+.+||||.-.=+|--....+..++.++ ...-..++||.-.-.+++.++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~----k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQL----KNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHh----hcCCcEEEEecccHHHHHHhhhe
Confidence 4566899999998877776777888888888 44456888998888888777764
No 448
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.34 E-value=4.1 Score=42.44 Aligned_cols=145 Identities=17% Similarity=0.079 Sum_probs=61.6
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHH----HHHHHHhhhc-CCcEEEEEECC
Q 007365 183 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI----HDEAKKFSYQ-TGVKVVVAYGG 257 (606)
Q Consensus 183 li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi----~~~~~~~~~~-~~~~~~~~~gg 257 (606)
|+.++.|+|||.+..+.++..++.... ...++++ ||...+... ...+..+... ..+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~----------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP----------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC----------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC
Confidence 467889999999877777776655431 1135555 665555543 2233333222 11111100111
Q ss_pred CChHHHHHHHhcCCcEEEecHHHH--HHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q 007365 258 APINQQLRELERGVDILVATPGRL--VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLF 335 (606)
Q Consensus 258 ~~~~~~~~~l~~~~~Ilv~Tp~~L--~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~ 335 (606)
.. .+..+..|.+.+...= ..-+. =..+++||+||+-.+.+..+...+....... .....+++
T Consensus 70 ~~------~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 133 (384)
T PF03237_consen 70 KI------ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATW-----GGSIRMYI 133 (384)
T ss_dssp EE------EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCS-----TT--EEEE
T ss_pred cE------EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcc-----cCcceEEe
Confidence 00 0034455666653321 11111 2557799999988765543333333333322 11122245
Q ss_pred eccC--hHHHHHHHHHhhcCc
Q 007365 336 SATF--PKEIQKLASDFLANY 354 (606)
Q Consensus 336 SAT~--~~~i~~l~~~~l~~~ 354 (606)
|.|. ...+..+....+.+.
T Consensus 134 s~p~~~~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 134 STPPNPGGWFYEIFQRNLDDD 154 (384)
T ss_dssp EE---SSSHHHHHHHHHHCTS
T ss_pred ecCCCCCCceeeeeehhhcCC
Confidence 5443 334455555555544
No 449
>PRK04328 hypothetical protein; Provisional
Probab=89.28 E-value=2.4 Score=42.05 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=35.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
.+..+++.+++|+|||+..+..+...+.+.. .+++++ +.+-..++.+.++.|.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge-------------~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------------cEEEEE-eeCCHHHHHHHHHHcC
Confidence 3577899999999999865555554433221 266665 5666777777777764
No 450
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.27 E-value=0.51 Score=52.60 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCC----------EEEEccCCCchhHHhHHH
Q 007365 130 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRD----------LMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 130 v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d----------~li~a~TGsGKT~a~llp 199 (606)
|++......+|..-...+.|+. .....+...|.++|-...+-.+ .||-...|.||--+..-.
T Consensus 238 VEtatLSSV~ppdi~YqlalP~--------i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi 309 (1300)
T KOG1513|consen 238 VETATLSSVEPPDITYQLALPS--------IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI 309 (1300)
T ss_pred eeeeeccccCCCCceEEEeccc--------CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE
Q ss_pred HHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh-hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecH
Q 007365 200 IISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF-SYQTGVKVVVAYGGAPINQQLRELERGVDILVATP 278 (606)
Q Consensus 200 il~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~-~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp 278 (606)
|+...++.... +|.++-+..|--...+.++.. +....+....-+--..+......-.+. -|++||+
T Consensus 310 IfeNyLkGRKr------------AlW~SVSsDLKfDAERDL~DigA~~I~V~alnK~KYakIss~en~n~kr-GViFaTY 376 (1300)
T KOG1513|consen 310 IFENYLKGRKR------------ALWFSVSSDLKFDAERDLRDIGATGIAVHALNKFKYAKISSKENTNTKR-GVIFATY 376 (1300)
T ss_pred Eehhhhcccce------------eEEEEeccccccchhhchhhcCCCCccceehhhcccccccccccCCccc-eeEEEee
Q ss_pred ---------------HHHHHHHHhccccccceeEEEEeccccccc---------CCCHHHHHHHHHhcCCCCCCCceEEE
Q 007365 279 ---------------GRLVDLLERARVSLQMIRYLALDEADRMLD---------MGFEPQIRKIVQQMDMPPPGVRQTML 334 (606)
Q Consensus 279 ---------------~~L~~~l~~~~~~l~~~~~lVlDEah~~~~---------~gf~~~i~~i~~~l~~~~~~~~q~ll 334 (606)
-+|..+++.-...+..+ |||||||+..+ ......+..+-+.| +..+++.
T Consensus 377 taLIGEs~~~~~kyrtR~rQllqW~Ge~feGv--IvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-----P~ARVVY 449 (1300)
T KOG1513|consen 377 TALIGESQGKGGKYRTRFRQLLQWCGEDFEGV--IVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-----PNARVVY 449 (1300)
T ss_pred HhhhhhccccCchHHHHHHHHHHHhhhcccee--EEehhhhhhcccccccCCCcCcccHhHHHHHHhC-----CCceEEE
Q ss_pred Eecc
Q 007365 335 FSAT 338 (606)
Q Consensus 335 ~SAT 338 (606)
-|||
T Consensus 450 ASAT 453 (1300)
T KOG1513|consen 450 ASAT 453 (1300)
T ss_pred eecc
No 451
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.26 E-value=5.7 Score=41.21 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=30.3
Q ss_pred cceeEEEEecccccccCC--CHHHHHHHHHhcCCCCCCCceEEEEeccChHH
Q 007365 293 QMIRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKE 342 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~g--f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~ 342 (606)
...-+||||-||.+-|++ ..+.+-++-+.+ +...-.+.+|++.+..
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~----~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELL----NEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHh----CCCceEEEEeccccHH
Confidence 345689999999998887 223334444444 3334578899997664
No 452
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=89.24 E-value=6.7 Score=39.75 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.0
Q ss_pred cchhhHHHHHHHHHhCCCCcEEeeCccC
Q 007365 409 ETKKGADALEHWLYMNGFPATTIHGDRT 436 (606)
Q Consensus 409 ~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 436 (606)
.|...++.|++.|. .++.+...|-++.
T Consensus 258 RSV~~~e~l~~~l~-~~~~v~~~Hrd~~ 284 (288)
T PRK05416 258 RSVAIAERLAERLS-KGYNVQVRHRDLE 284 (288)
T ss_pred cHHHHHHHHHHHHh-CCCcEEEEeCccc
Confidence 45778999999994 6899999998774
No 453
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.21 E-value=0.97 Score=53.10 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHh
Q 007365 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
.++|+.+++|+|||+..
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999853
No 454
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=89.17 E-value=4.9 Score=37.72 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=33.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhh
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS 244 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~ 244 (606)
.+.-+++.|++|+|||.. ++-++..+......... .......+|++..--. ..++.+.+..+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~-~~~l~~~~~~g~~~~g~--~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTL-ALQLAAALATGRPFLGE--LPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHH-HHHHHHHHHT---TT-----------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHhCCccCCc--ccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 566789999999999995 44444445432211000 0011234676655333 567777777654
No 455
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.13 E-value=1.1 Score=43.32 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=17.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHH
Q 007365 179 GRDLMACAQTGSGKTAAFCFPII 201 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil 201 (606)
+.-+++.+++|+|||+..+..+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~ 41 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAV 41 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999985444433
No 456
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.02 E-value=3.1 Score=49.49 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=30.2
Q ss_pred eEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccCh
Q 007365 296 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 340 (606)
Q Consensus 296 ~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~ 340 (606)
-+||||++|.+-+......+..++..+ +....+|+.|-+.|
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~----~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQ----PENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhC----CCCeEEEEEeCCCC
Confidence 479999999886555556677777766 67777878887744
No 457
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.01 E-value=0.95 Score=42.67 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=24.9
Q ss_pred CCHHHHhHHHHH-hcCCCEEEEccCCCchhHH
Q 007365 165 PTPVQRHAIPIS-VAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 165 p~~~Q~~ai~~i-~~~~d~li~a~TGsGKT~a 195 (606)
+++-|...+... ..+..++++++||||||+.
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 667777777654 4568899999999999984
No 458
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.00 E-value=0.4 Score=49.08 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q 007365 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
..+++.+|.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999984
No 459
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.98 E-value=1.6 Score=47.43 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhHH
Q 007365 180 RDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ll 198 (606)
+.+|+.+|.|+|||.++..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 3478999999999996543
No 460
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.93 E-value=1.9 Score=42.69 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.8
Q ss_pred HhcCCCEEEEccCCCchhH
Q 007365 176 SVAGRDLMACAQTGSGKTA 194 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~ 194 (606)
+-.|+.+++.++.|+|||+
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4567899999999999997
No 461
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=88.71 E-value=2.3 Score=46.34 Aligned_cols=68 Identities=18% Similarity=0.366 Sum_probs=50.6
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
.+||.|+++.-+..+++.+.+. ++.+..++++.+..+.... +.. ..+||||| +.+.++ +++.++++
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~rG-iDip~v~~ 316 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAARG-LDIEELPH 316 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHhcC-CCcccCCE
Confidence 4999999999999998888764 6788888998876554433 333 47899999 555443 56777777
Q ss_pred EE
Q 007365 298 LA 299 (606)
Q Consensus 298 lV 299 (606)
||
T Consensus 317 VI 318 (456)
T PRK10590 317 VV 318 (456)
T ss_pred EE
Confidence 76
No 462
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.70 E-value=0.89 Score=47.15 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=24.9
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
....+++|+||+|+|... ....+++.+..+ |....+|+ .++
T Consensus 108 ~~~~kvviI~~a~~~~~~----a~NaLLK~LEEP-p~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS----AANSLLKFLEEP-SGGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH----HHHHHHHHhcCC-CCCceEEE-EeC
Confidence 456789999999998653 344555555443 34444444 444
No 463
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.65 E-value=1.2 Score=52.40 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHh
Q 007365 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
.++|+.+|+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 68999999999999854
No 464
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.58 E-value=1.7 Score=47.07 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=33.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+.-+++.+++|+|||+..+. ++..+.+.. -.+|+++. -+...|+...+.++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~~g------------~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAKNQ------------MKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHhcC------------CcEEEEEC-cCCHHHHHHHHHHc
Confidence 356789999999999995443 333333221 12777765 45667777766665
No 465
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.54 E-value=4.5 Score=44.61 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=77.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcC-CcEEEEEECC
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQT-GVKVVVAYGG 257 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~-~~~~~~~~gg 257 (606)
.+-.+..-|--.|||. |+.||+..++..- .+.++.+++..+.-++-+.+++..-+..+ +-+-+.-.
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s~----------~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~-- 268 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKNI----------IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN-- 268 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHhh----------cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee--
Confidence 4556667799999998 7999998888742 23469999999999888888776433221 11111111
Q ss_pred CChHHHHHHHhcCCcEEEecHHHH-----HHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceE
Q 007365 258 APINQQLRELERGVDILVATPGRL-----VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQT 332 (606)
Q Consensus 258 ~~~~~~~~~l~~~~~Ilv~Tp~~L-----~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ 332 (606)
++-.|.+.-|+.= ....+...+.=+++.+|++||||=+.. +.+..|+-.+. .++.++
T Consensus 269 -----------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~---q~~~Ki 330 (668)
T PHA03372 269 -----------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLA---QNTTKI 330 (668)
T ss_pred -----------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhc---ccCceE
Confidence 1112333333221 111122233446788999999995432 34555555542 556778
Q ss_pred EEEecc
Q 007365 333 MLFSAT 338 (606)
Q Consensus 333 ll~SAT 338 (606)
|..|.|
T Consensus 331 IfISS~ 336 (668)
T PHA03372 331 IFISST 336 (668)
T ss_pred EEEeCC
Confidence 888877
No 466
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.52 E-value=0.74 Score=48.25 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=19.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
.+.-+++++|||||||+. +..++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456789999999999984 34444444
No 467
>PRK09087 hypothetical protein; Validated
Probab=88.51 E-value=1.6 Score=42.52 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=24.9
Q ss_pred EEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHH
Q 007365 297 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEI 343 (606)
Q Consensus 297 ~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i 343 (606)
+|+||++|.+. .-...+-.+++.+. ....++|+.|.|.|...
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~---~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVR---QAGTSLLMTSRLWPSSW 131 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHH---hCCCeEEEECCCChHHh
Confidence 79999999763 23456677776662 22344554455555543
No 468
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.48 E-value=0.93 Score=50.41 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=23.5
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhc
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
+++-+++||||+---+|..-+..+.+.+..+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 5667789999999888877677776666654
No 469
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.47 E-value=2.2 Score=48.12 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 007365 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+-+++.+|+|+|||+++
T Consensus 111 ~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 111 RILLITGPSGCGKSTTI 127 (637)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999953
No 470
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=2.8 Score=45.20 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=35.3
Q ss_pred HHHHHHHhccccccceeEEEEecccccccCC-------CHHHHHHHHHhcCCCCCCCceEEEEecc-ChHHH
Q 007365 280 RLVDLLERARVSLQMIRYLALDEADRMLDMG-------FEPQIRKIVQQMDMPPPGVRQTMLFSAT-FPKEI 343 (606)
Q Consensus 280 ~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g-------f~~~i~~i~~~l~~~~~~~~q~ll~SAT-~~~~i 343 (606)
|+.+++...+ -..-.+|.|||+|-+...- ....|..++..++-..++. -+|.+-|| +|..+
T Consensus 384 RVRdLF~aAk--~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe-GiIvigATNfpe~L 452 (752)
T KOG0734|consen 384 RVRDLFAAAK--ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE-GIIVIGATNFPEAL 452 (752)
T ss_pred HHHHHHHHHH--hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC-ceEEEeccCChhhh
Confidence 3445444333 2334579999999776432 2344556666665544333 57888999 45443
No 471
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.17 E-value=5.1 Score=46.73 Aligned_cols=17 Identities=35% Similarity=0.433 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchhHH
Q 007365 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
+..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 35689999999999984
No 472
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=2.3 Score=46.63 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=35.1
Q ss_pred CCCCCCCCccccCC-CCHHHHHHHHhC-CCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhH
Q 007365 135 ENVPPPVNTFAEID-LGEELNLNIRRC-KYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTA 194 (606)
Q Consensus 135 ~~~p~~~~~f~~~~-l~~~l~~~l~~~-~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~ 194 (606)
...|++..+|.+++ ++..+.+.++.. .+..|..++.-.+ .--+.+|+.+|.|||||.
T Consensus 180 ~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~ 238 (802)
T KOG0733|consen 180 LEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTS 238 (802)
T ss_pred cCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHH
Confidence 34455555777774 555554433322 1445555554433 334899999999999997
No 473
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=87.85 E-value=0.5 Score=51.40 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=19.5
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCC
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 324 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~ 324 (606)
..+++..|+||+|+|....| ..+++.+..
T Consensus 117 ~~ryKVyiIDEvHMLS~~af----NALLKTLEE 145 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAF----NALLKTLEE 145 (515)
T ss_pred cccceEEEEecHHhhhHHHH----HHHhccccc
Confidence 56788999999997765444 344444443
No 474
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.84 E-value=2.1 Score=46.20 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=54.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECC
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGG 257 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg 257 (606)
.+.-+++.|.+|+|||.. ++-++.++.... +..+++++. -.-..|+.+.+.... .++....+..+
T Consensus 194 ~G~l~vi~g~pg~GKT~~-~l~~a~~~a~~~-----------g~~vl~~Sl-Em~~~~i~~R~~~~~--~~v~~~~~~~g 258 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAF-ALNIAENAAIKE-----------GKPVAFFSL-EMSAEQLAMRMLSSE--SRVDSQKLRTG 258 (434)
T ss_pred CCeEEEEEeCCCCChHHH-HHHHHHHHHHhC-----------CCeEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHhccC
Confidence 345678899999999984 444444433211 012555543 334455554444332 12221111122
Q ss_pred CChHHHH-------HHHhcCCcEEEe-----cHHHHHHHHHhccccccceeEEEEecccccc
Q 007365 258 APINQQL-------RELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRML 307 (606)
Q Consensus 258 ~~~~~~~-------~~l~~~~~Ilv~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~ 307 (606)
.-...++ ..+.. ..+.|. |+..+...+.+.... ..+++||||=.+.|.
T Consensus 259 ~l~~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 259 KLSDEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred CCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 2112222 22222 344442 455555544433222 347899999888764
No 475
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=11 Score=37.17 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHh
Q 007365 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
-+.+++.+|.|+|||+++
T Consensus 211 pkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCceEEeCCCCCchhHHH
Confidence 388999999999999864
No 476
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.81 E-value=0.71 Score=46.35 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=29.3
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHH
Q 007365 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTREL 232 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~L 232 (606)
+..+.+++++++||||||+. +..++..+... ..+++++-.+.|+
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i~~~------------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEIPPE------------DERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT------------TSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchH-HHHHhhhcccc------------ccceEEeccccce
Confidence 34568999999999999994 44445443322 1247888877776
No 477
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=87.78 E-value=1.4 Score=46.17 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHHh
Q 007365 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+.+|+.+|.|+|||..+
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999854
No 478
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.73 E-value=2.9 Score=45.83 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=41.6
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCC
Q 007365 401 QSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP 479 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p 479 (606)
...+.|.|.+-.+|..+.+.|++.. .+..-...-+.|..|.+-+.| -.+.||.+ ++||.||+.
T Consensus 655 ~etiaVi~kt~~d~~~~~d~lre~~----------~~r~I~k~nq~f~~~~~vipv---y~aKGlEF---D~viv~d~s 717 (747)
T COG3973 655 SETIAVICKTDHDCKAVMDSLREKD----------SQRTIAKENQRFHHGSDVIPV---YDAKGLEF---DHVIVVDPS 717 (747)
T ss_pred CCceEEECCcHHHHHHHHHHHhhcc----------hhhHHHhhcccccCCceEEEe---eeccccee---eeEEEecch
Confidence 4557899999999999999997542 122222233456666554443 35678877 788888873
No 479
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.71 E-value=2.8 Score=45.09 Aligned_cols=71 Identities=28% Similarity=0.362 Sum_probs=52.7
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+++..|..+++.+... ++++..++++.+..+....+ .. .++||||| +.+.++ +++.++++
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-----dv~~rG-iDip~v~~ 326 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT-----DVAARG-LHIPAVTH 326 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-----chhhcC-CCccccCE
Confidence 4999999999999988888764 78889999887765544333 33 57999999 555443 57888888
Q ss_pred EEEec
Q 007365 298 LALDE 302 (606)
Q Consensus 298 lVlDE 302 (606)
||.-+
T Consensus 327 VI~~d 331 (423)
T PRK04837 327 VFNYD 331 (423)
T ss_pred EEEeC
Confidence 77544
No 480
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.66 E-value=8.9 Score=40.59 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=74.1
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCCh
Q 007365 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~ 260 (606)
.++.++=-|||||++.. =|+.+++.+..+ ..||-|.|.--|- ++.++.++...++.+.-...+.+
T Consensus 102 vImmvGLQGsGKTTt~~--KLA~~lkk~~~k----------vllVaaD~~RpAA--~eQL~~La~q~~v~~f~~~~~~~- 166 (451)
T COG0541 102 VILMVGLQGSGKTTTAG--KLAKYLKKKGKK----------VLLVAADTYRPAA--IEQLKQLAEQVGVPFFGSGTEKD- 166 (451)
T ss_pred EEEEEeccCCChHhHHH--HHHHHHHHcCCc----------eEEEecccCChHH--HHHHHHHHHHcCCceecCCCCCC-
Confidence 37778889999999643 333444432111 1455555543332 35666666666666654311111
Q ss_pred HHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccc-cCCCHHHHHHHHHhcCCCCCCCceEEEEeccC
Q 007365 261 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF 339 (606)
Q Consensus 261 ~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~-~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~ 339 (606)
.-++ ...-++.. ....+++||+|=|=|+- |.....++..|-..+ .++--++.+-|+.
T Consensus 167 Pv~I----------------ak~al~~a--k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~----~P~E~llVvDam~ 224 (451)
T COG0541 167 PVEI----------------AKAALEKA--KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVI----NPDETLLVVDAMI 224 (451)
T ss_pred HHHH----------------HHHHHHHH--HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhc----CCCeEEEEEeccc
Confidence 1111 01112221 23446788888887654 333455666666666 3444566677887
Q ss_pred hHHHHHHHHHhhc
Q 007365 340 PKEIQKLASDFLA 352 (606)
Q Consensus 340 ~~~i~~l~~~~l~ 352 (606)
-.+....++.|-.
T Consensus 225 GQdA~~~A~aF~e 237 (451)
T COG0541 225 GQDAVNTAKAFNE 237 (451)
T ss_pred chHHHHHHHHHhh
Confidence 7777777777654
No 481
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.59 E-value=0.64 Score=52.68 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=38.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007365 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.++++++|+||||||..+++|-+-.+. -.+||+=|--|+........++.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~---------------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFK---------------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCC---------------CCEEEEeCCchHHHHHHHHHHhC
Confidence 368999999999999999999764321 12899999999888766655553
No 482
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.57 E-value=2.1 Score=46.85 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=54.2
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007365 401 QSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
...+||.+++++-+....+.|...++.+..+++..+..++..++.....++.+||++|.
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 44689999999999989999999999999999999999999999999999999999995
No 483
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=87.49 E-value=0.72 Score=47.89 Aligned_cols=16 Identities=25% Similarity=0.166 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q 007365 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+-+++.+|.|||||+.
T Consensus 149 lgllL~GPPGcGKTll 164 (413)
T PLN00020 149 LILGIWGGKGQGKSFQ 164 (413)
T ss_pred eEEEeeCCCCCCHHHH
Confidence 5688999999999984
No 484
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.46 E-value=2.8 Score=46.30 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=52.0
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHh----cCCcEEEecHHHHHHHHHhccccccceeE
Q 007365 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
.+||.|.|+..+..++..+.+. ++++..++|+.+.....+.+. ...+||||| |...+ .+++.++++
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----DvaaR-GiDi~~v~~ 344 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVAAR-GLDIPDVSH 344 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chhhc-cCCccccce
Confidence 4999999999999988888875 789999999988665554443 258999999 55433 346777777
Q ss_pred EE
Q 007365 298 LA 299 (606)
Q Consensus 298 lV 299 (606)
||
T Consensus 345 Vi 346 (513)
T COG0513 345 VI 346 (513)
T ss_pred eE
Confidence 74
No 485
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.45 E-value=1.1 Score=50.16 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=30.2
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
+++-.++|||||..-+|..-+..+.+.+..+ ...+.+++.+.-
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l----~~~rT~iiIaHR 523 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKL----LKGRTTLIIAHR 523 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHH----hcCCEEEEEecc
Confidence 4556789999999999988888888777755 233444544443
No 486
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.44 E-value=2.8 Score=48.63 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 007365 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
..+.+++.+|+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 357899999999999984
No 487
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.42 E-value=0.86 Score=46.81 Aligned_cols=56 Identities=25% Similarity=0.276 Sum_probs=37.4
Q ss_pred CCCCHHHHhHHH-HHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHH
Q 007365 163 VKPTPVQRHAIP-ISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTREL 232 (606)
Q Consensus 163 ~~p~~~Q~~ai~-~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~L 232 (606)
..+.+.|..-+. ++..+++++++++||||||+ ++.+++..+-... +++.+=-|.|+
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip~~~-------------rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIPPEE-------------RIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCCchh-------------cEEEEeccccc
Confidence 346677765554 45566999999999999998 3555554443221 36777666665
No 488
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.42 E-value=1.8 Score=39.39 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=24.3
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhc
Q 007365 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
....+++|+||...-+|......+..++..+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~ 126 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLREL 126 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 3446789999999988877777777777765
No 489
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.42 E-value=4 Score=47.98 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHh
Q 007365 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
.++|+.+++|+|||+.+
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 68999999999999854
No 490
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.39 E-value=8.6 Score=43.78 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=71.7
Q ss_pred CcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHH---HHHhc-CCcEEEecHHHHHHHHHhccccccce
Q 007365 220 YPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQL---RELER-GVDILVATPGRLVDLLERARVSLQMI 295 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~ 295 (606)
+.++||+|+|+..+..+++.+... ++++..++++....+.. ..+.. ..+|+||| +.+.++ +.+..+
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG-fDiP~v 511 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG-LDLPEV 511 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC-eeeCCC
Confidence 346999999999999999888875 67888888876544332 33333 47899999 555544 578899
Q ss_pred eEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHH
Q 007365 296 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLA 347 (606)
Q Consensus 296 ~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~ 347 (606)
++||+-|++...-......+-.++-..... ....++++--.....+...+
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriGRagR~--~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhcCCCCC--CCCEEEEEEcCCCHHHHHHH
Confidence 999988887643222223333333322222 23345555555554444333
No 491
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.27 E-value=0.8 Score=50.53 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCCHHHHhHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007365 164 KPTPVQRHAIPI----SVAGRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 164 ~p~~~Q~~ai~~----i~~~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
+|+.||.+.+.. +-+|+-.|+..|||+|||+..+-.++..+-.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 688999988765 4557889999999999999866666665543
No 492
>PRK05748 replicative DNA helicase; Provisional
Probab=87.22 E-value=3.6 Score=44.63 Aligned_cols=113 Identities=11% Similarity=0.059 Sum_probs=54.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH-HhhhcCCcEEEEEEC
Q 007365 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK-KFSYQTGVKVVVAYG 256 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~-~~~~~~~~~~~~~~g 256 (606)
.+.-++|.|.||+|||+.. +-++.++.... +-.+++++ .-.-..|+...+- .++ ++....+..
T Consensus 202 ~G~livIaarpg~GKT~~a-l~ia~~~a~~~-----------g~~v~~fS-lEms~~~l~~R~l~~~~---~v~~~~i~~ 265 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFA-LNIAQNVATKT-----------DKNVAIFS-LEMGAESLVMRMLCAEG---NIDAQRLRT 265 (448)
T ss_pred CCceEEEEeCCCCCchHHH-HHHHHHHHHhC-----------CCeEEEEe-CCCCHHHHHHHHHHHhc---CCCHHHhhc
Confidence 3456788999999999854 44444433211 01255553 3344555555543 221 222111112
Q ss_pred CCChHHHHH-------HHhcCCcEEEe-----cHHHHHHHHHhccccccceeEEEEecccccc
Q 007365 257 GAPINQQLR-------ELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRML 307 (606)
Q Consensus 257 g~~~~~~~~-------~l~~~~~Ilv~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~ 307 (606)
+.-...++. .+. ...+.|. |+..+...+.+-......+++||+|=.|.|-
T Consensus 266 ~~l~~~e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 266 GQLTDDDWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 221122222 222 2345553 4455555444322211268899999999774
No 493
>COG4371 Predicted membrane protein [Function unknown]
Probab=87.17 E-value=1.5 Score=42.01 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=4.8
Q ss_pred ccHHHHHHHHh
Q 007365 527 VPAWLTRYASR 537 (606)
Q Consensus 527 vp~~L~~~~~~ 537 (606)
+|+.....+.+
T Consensus 38 ~~p~~~a~aar 48 (334)
T COG4371 38 VPPLSVAAAAR 48 (334)
T ss_pred CCchHHHHHHh
Confidence 34444444444
No 494
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=1.3 Score=51.79 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=31.2
Q ss_pred CccccCCCCHHHHHHHHhCCCC---CCCHHHHhHHHHHhcCCCEEEEccCCCchhHH
Q 007365 142 NTFAEIDLGEELNLNIRRCKYV---KPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~---~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a 195 (606)
..|++++.-..+...|+.+-+. .|.-+|... +..-+.++.++|.|+|||+.
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~---itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN---ITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc---cCCCcceeecCCCCCchhHH
Confidence 3677777666666666555332 122222222 23347899999999999984
No 495
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=87.05 E-value=1.8 Score=42.58 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=69.9
Q ss_pred CCCcEEeeCccCHHHHHHHHHhccCCC----CcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhcc--ccCCCc
Q 007365 425 GFPATTIHGDRTQQERELALRSFKSGK----TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRT--GRAGKS 498 (606)
Q Consensus 425 ~~~~~~lhg~~~~~~R~~~l~~F~~g~----~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~--gR~g~~ 498 (606)
++.+..++++.+... -.|..+. ..|+|.=+.++||+.+++..+......+.+.+++.||. |- -|.|-.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qmg-RwFGYR~gY~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMG-RWFGYRPGYE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHh-hcccCCcccc
Confidence 566777776544332 3344443 67889999999999999999999999999888888884 42 256667
Q ss_pred ceEEEEeccCChhhHHHHHHHHHHhcCcccHHHHHHHH
Q 007365 499 GLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYAS 536 (606)
Q Consensus 499 G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L~~~~~ 536 (606)
..|-++.+++-......+. +..+++-+.|..++.
T Consensus 184 dl~Ri~~~~~l~~~f~~i~----~~~e~lr~~i~~~~~ 217 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIA----EAEEELREEIKEMAN 217 (239)
T ss_pred cceEEecCHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 7888888665444444333 444555566666654
No 496
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=1.5 Score=47.12 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=34.0
Q ss_pred CCCCCCCccccCC---CCHHHHHHHHhCCCCCCCHHHHhHHHHH--hcCCCEEEEccCCCchhHH
Q 007365 136 NVPPPVNTFAEID---LGEELNLNIRRCKYVKPTPVQRHAIPIS--VAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 136 ~~p~~~~~f~~~~---l~~~l~~~l~~~~~~~p~~~Q~~ai~~i--~~~~d~li~a~TGsGKT~a 195 (606)
.+..|.-.|++++ |+.+..+..++.--....| -+.+..+ ..=+.+|+.+|+|+|||+.
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFp--p~vie~lGi~HVKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFP--PEVIEQLGIKHVKGILLYGPPGTGKTLI 272 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCC--HHHHHHcCccceeeEEEECCCCCChhHH
Confidence 3445666788884 6777766665432111111 1122211 1227899999999999984
No 497
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.92 E-value=6.1 Score=37.42 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=50.5
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-----cc-ccCCCCCCc
Q 007365 401 QSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VA-ARGLDIPHV 470 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-----v~-~~GlDip~v 470 (606)
..++||.++++..+...++.+... ++.+..+|++.+..+....+. +...|+|+|. .+ ..-++++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 567999999999888877766543 677788999888766554443 5678999994 12 223566777
Q ss_pred cEEEE
Q 007365 471 AHVVN 475 (606)
Q Consensus 471 ~~VI~ 475 (606)
.++|.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 77763
No 498
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=86.87 E-value=11 Score=39.01 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=27.9
Q ss_pred eEEEEecccccccCCCHHHHHHHHHhcCCCCC----CCceEEEEeccChHHHHHHHHHh
Q 007365 296 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPP----GVRQTMLFSATFPKEIQKLASDF 350 (606)
Q Consensus 296 ~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~----~~~q~ll~SAT~~~~i~~l~~~~ 350 (606)
+++|+==+|.+...........+...+....+ ....++.+||+-...+.++...+
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I 255 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAI 255 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 46777777755433333333333333332111 12457888888665555555443
No 499
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.84 E-value=0.2 Score=54.81 Aligned_cols=8 Identities=50% Similarity=0.916 Sum_probs=0.0
Q ss_pred CCCcCCCc
Q 007365 28 STYVPPHL 35 (606)
Q Consensus 28 ~~~~~~~~ 35 (606)
..|+||-.
T Consensus 513 ~~y~~p~~ 520 (556)
T PF05918_consen 513 QQYVPPSG 520 (556)
T ss_dssp --------
T ss_pred cccCCCCC
Confidence 34555544
No 500
>PRK14701 reverse gyrase; Provisional
Probab=86.75 E-value=3.5 Score=51.61 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred EEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHh------CCCCcEEeeCccCHHHHHHHHHh
Q 007365 373 VEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYM------NGFPATTIHGDRTQQERELALRS 446 (606)
Q Consensus 373 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~------~~~~~~~lhg~~~~~~R~~~l~~ 446 (606)
........|.....-+....... ..++||.++|+.-+..+++.|+. .++.+..+||+++..++.++++.
T Consensus 99 i~APTGsGKTl~~~~~al~~~~~-----g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~ 173 (1638)
T PRK14701 99 IVAPTGMGKSTFGAFIALFLALK-----GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLER 173 (1638)
T ss_pred EEEcCCCCHHHHHHHHHHHHHhc-----CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHH
Q ss_pred ccCCCCcEEEEcc
Q 007365 447 FKSGKTPILVATD 459 (606)
Q Consensus 447 F~~g~~~iLVaT~ 459 (606)
+++|..+|||+|.
T Consensus 174 l~~g~~dILV~TP 186 (1638)
T PRK14701 174 IENGDFDILVTTA 186 (1638)
T ss_pred HhcCCCCEEEECC
Done!