Query 007366
Match_columns 606
No_of_seqs 275 out of 555
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:59:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 1.7E-55 5.9E-60 462.4 24.8 310 166-499 18-353 (360)
2 3i2d_A E3 SUMO-protein ligase 100.0 3.3E-54 1.1E-58 453.8 23.4 264 170-455 69-340 (371)
3 2rno_A Putative DNA-binding pr 100.0 2.1E-33 7.3E-38 241.8 10.8 101 2-104 8-110 (110)
4 2rsd_A E3 SUMO-protein ligase 99.5 2.2E-14 7.6E-19 117.7 4.7 66 106-172 3-68 (68)
5 1v66_A Protein inhibitor of ac 99.4 8.5E-14 2.9E-18 111.5 6.2 63 1-75 1-63 (65)
6 1wew_A DNA-binding family prot 99.4 1.1E-13 3.9E-18 116.3 5.3 71 103-173 6-76 (78)
7 1weu_A Inhibitor of growth fam 99.0 7.8E-10 2.7E-14 95.7 7.5 64 99-170 22-86 (91)
8 3o70_A PHD finger protein 13; 98.9 6.6E-10 2.2E-14 91.2 4.4 53 109-169 15-67 (68)
9 3o7a_A PHD finger protein 13 v 98.9 4.2E-10 1.5E-14 87.4 3.0 49 112-168 3-51 (52)
10 2lv9_A Histone-lysine N-methyl 98.8 3.3E-09 1.1E-13 92.9 5.6 54 110-171 25-78 (98)
11 2g6q_A Inhibitor of growth pro 98.8 1.6E-09 5.5E-14 87.3 2.9 54 109-170 7-61 (62)
12 3htk_C E3 SUMO-protein ligase 98.8 2.9E-09 1E-13 108.1 5.4 77 350-428 170-248 (267)
13 3c6w_A P28ING5, inhibitor of g 98.8 1.8E-09 6.2E-14 86.2 2.8 54 109-170 5-59 (59)
14 1wen_A Inhibitor of growth fam 98.8 7.7E-09 2.6E-13 85.5 5.8 54 109-170 12-66 (71)
15 1wee_A PHD finger family prote 98.8 3.2E-09 1.1E-13 87.8 3.5 54 110-170 13-67 (72)
16 1wep_A PHF8; structural genomi 98.7 3.1E-09 1E-13 89.4 2.7 60 110-175 9-69 (79)
17 3kqi_A GRC5, PHD finger protei 98.7 3.2E-09 1.1E-13 88.5 1.4 60 110-175 7-67 (75)
18 2vnf_A ING 4, P29ING4, inhibit 98.7 6.1E-09 2.1E-13 83.3 2.7 54 109-170 6-60 (60)
19 1we9_A PHD finger family prote 98.7 9.3E-09 3.2E-13 82.8 3.6 55 110-170 3-59 (64)
20 1wem_A Death associated transc 98.7 7.5E-10 2.6E-14 92.3 -3.4 57 112-170 15-71 (76)
21 1x4i_A Inhibitor of growth pro 98.6 1.7E-08 5.8E-13 83.2 2.9 52 110-169 3-55 (70)
22 2jmi_A Protein YNG1, ING1 homo 98.5 4.6E-08 1.6E-12 84.4 3.8 52 109-168 22-75 (90)
23 2k16_A Transcription initiatio 98.2 4.3E-07 1.5E-11 75.2 2.6 53 110-169 15-68 (75)
24 2rnn_A E3 SUMO-protein ligase 98.2 2.1E-06 7.1E-11 76.8 6.5 65 4-71 30-94 (114)
25 3kv5_D JMJC domain-containing 98.2 2.1E-07 7.2E-12 102.4 0.1 56 109-170 33-89 (488)
26 2ri7_A Nucleosome-remodeling f 98.2 1.8E-07 6E-12 89.1 -0.5 55 110-170 5-60 (174)
27 3kv4_A PHD finger protein 8; e 98.1 3.5E-07 1.2E-11 99.5 -1.4 55 112-172 4-59 (447)
28 2kgg_A Histone demethylase jar 98.0 5.9E-07 2E-11 69.7 0.0 48 114-167 4-52 (52)
29 2do1_A Nuclear protein HCC-1; 97.8 8.6E-06 3E-10 64.1 3.5 38 11-48 10-47 (55)
30 1zrj_A E1B-55KDA-associated pr 97.7 2.5E-05 8.7E-10 60.2 4.3 38 11-48 10-47 (50)
31 2xb1_A Pygopus homolog 2, B-ce 97.6 1.9E-05 6.4E-10 69.9 2.3 54 116-170 7-62 (105)
32 1h1j_S THO1 protein; SAP domai 97.6 4.6E-05 1.6E-09 59.0 3.8 39 11-49 5-43 (51)
33 2kvu_A MKL/myocardin-like prot 97.6 4.2E-05 1.4E-09 63.6 3.6 40 10-49 25-64 (75)
34 2vpb_A Hpygo1, pygopus homolog 97.4 3E-05 1E-09 62.9 1.1 53 113-167 9-64 (65)
35 3lqh_A Histone-lysine N-methyl 97.4 1.2E-05 4.1E-10 77.8 -2.4 55 114-170 3-64 (183)
36 1jjr_A KU70, thyroid autoantig 97.4 9.6E-05 3.3E-09 69.3 3.6 39 10-48 60-98 (151)
37 2yu4_A E3 SUMO-protein ligase 97.3 0.00021 7.1E-09 61.3 4.9 70 359-430 5-81 (94)
38 2l43_A N-teminal domain from h 97.2 0.00014 4.6E-09 62.4 2.7 55 113-176 26-82 (88)
39 2ku3_A Bromodomain-containing 97.2 0.00012 4.2E-09 60.3 2.2 51 114-173 18-70 (71)
40 1f62_A Transcription factor WS 97.1 0.0002 6.7E-09 54.8 2.6 45 117-168 5-49 (51)
41 3pur_A Lysine-specific demethy 97.1 0.00015 5.1E-09 79.9 2.4 51 113-169 40-94 (528)
42 2kr4_A Ubiquitin conjugation f 97.1 0.00033 1.1E-08 59.1 3.9 66 358-428 11-76 (85)
43 2e6r_A Jumonji/ARID domain-con 97.1 0.00033 1.1E-08 60.4 3.9 53 110-169 13-66 (92)
44 2l5u_A Chromodomain-helicase-D 97.0 0.00041 1.4E-08 55.3 3.8 54 107-170 5-59 (61)
45 1xwh_A Autoimmune regulator; P 96.9 0.00064 2.2E-08 55.0 4.0 48 113-170 8-56 (66)
46 4gne_A Histone-lysine N-methyl 96.9 0.00075 2.6E-08 59.9 4.5 48 111-167 13-60 (107)
47 1wgm_A Ubiquitin conjugation f 96.9 0.0016 5.4E-08 56.5 6.2 66 358-428 19-85 (98)
48 2yql_A PHD finger protein 21A; 96.8 0.00091 3.1E-08 52.3 3.8 46 113-168 9-55 (56)
49 2bay_A PRE-mRNA splicing facto 96.7 0.00051 1.8E-08 54.7 1.9 53 360-416 2-54 (61)
50 2kre_A Ubiquitin conjugation f 96.6 0.0021 7.3E-08 55.9 5.0 66 358-428 26-91 (100)
51 2lri_C Autoimmune regulator; Z 96.5 0.0017 6E-08 52.6 3.9 48 113-170 12-60 (66)
52 3asl_A E3 ubiquitin-protein li 96.5 0.0017 5.8E-08 53.2 3.4 46 117-169 23-69 (70)
53 2puy_A PHD finger protein 21A; 96.4 0.0017 5.8E-08 51.4 2.8 46 114-169 6-52 (60)
54 2yt5_A Metal-response element- 96.4 0.0028 9.5E-08 50.8 4.0 53 114-170 7-62 (66)
55 1t1h_A Gspef-atpub14, armadill 96.3 0.0025 8.5E-08 51.9 3.8 65 361-429 8-72 (78)
56 2e6s_A E3 ubiquitin-protein li 96.3 0.0065 2.2E-07 50.7 6.0 45 117-168 31-76 (77)
57 3ztg_A E3 ubiquitin-protein li 96.3 0.0039 1.3E-07 52.3 4.8 67 361-430 13-81 (92)
58 2f42_A STIP1 homology and U-bo 96.2 0.0037 1.3E-07 60.2 4.8 66 359-428 104-169 (179)
59 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.8 0.00046 1.6E-08 61.6 -3.5 42 126-169 1-44 (140)
60 2y43_A E3 ubiquitin-protein li 95.6 0.016 5.4E-07 49.4 5.6 68 358-430 19-87 (99)
61 1mm2_A MI2-beta; PHD, zinc fin 95.6 0.013 4.3E-07 46.6 4.5 47 113-169 9-56 (61)
62 2ckl_B Ubiquitin ligase protei 95.5 0.0095 3.2E-07 55.6 4.1 71 356-430 49-121 (165)
63 3shb_A E3 ubiquitin-protein li 95.4 0.0086 2.9E-07 50.0 3.2 46 117-168 31-76 (77)
64 2c2l_A CHIP, carboxy terminus 95.3 0.01 3.5E-07 58.9 4.0 65 360-428 207-271 (281)
65 3rsn_A SET1/ASH2 histone methy 95.2 0.011 3.9E-07 56.7 3.7 56 112-170 4-60 (177)
66 2kwj_A Zinc finger protein DPF 95.2 0.011 3.6E-07 52.7 3.2 46 117-169 63-108 (114)
67 1fp0_A KAP-1 corepressor; PHD 95.1 0.022 7.6E-07 48.8 5.0 47 113-169 25-72 (88)
68 3lrq_A E3 ubiquitin-protein li 94.9 0.017 5.8E-07 49.6 3.7 70 357-430 18-88 (100)
69 3ask_A E3 ubiquitin-protein li 94.8 0.016 5.4E-07 57.7 3.5 46 117-169 179-225 (226)
70 2ysm_A Myeloid/lymphoid or mix 94.7 0.022 7.6E-07 50.0 3.8 51 115-172 56-107 (111)
71 3fl2_A E3 ubiquitin-protein li 94.6 0.031 1.1E-06 49.6 4.8 66 358-428 49-116 (124)
72 2ckl_A Polycomb group ring fin 94.6 0.035 1.2E-06 48.0 4.8 68 357-428 11-82 (108)
73 1jm7_B BARD1, BRCA1-associated 94.5 0.021 7.3E-07 50.3 3.5 65 359-430 20-85 (117)
74 1z6u_A NP95-like ring finger p 94.1 0.046 1.6E-06 50.7 4.9 67 358-429 75-143 (150)
75 3hct_A TNF receptor-associated 93.9 0.04 1.4E-06 48.6 3.9 69 356-429 13-82 (118)
76 3o36_A Transcription intermedi 93.8 0.039 1.3E-06 52.6 3.8 46 115-170 6-52 (184)
77 1jm7_A BRCA1, breast cancer ty 93.6 0.041 1.4E-06 47.4 3.3 57 361-420 21-78 (112)
78 2ecw_A Tripartite motif-contai 93.5 0.011 3.8E-07 48.2 -0.4 63 359-422 17-81 (85)
79 2ecy_A TNF receptor-associated 93.3 0.099 3.4E-06 41.0 4.8 53 359-415 13-65 (66)
80 3v43_A Histone acetyltransfera 93.3 0.059 2E-06 47.6 3.8 45 117-168 66-111 (112)
81 1wev_A Riken cDNA 1110020M19; 92.7 0.068 2.3E-06 45.5 3.3 54 113-170 16-73 (88)
82 3u5n_A E3 ubiquitin-protein li 92.7 0.051 1.8E-06 52.9 2.9 47 114-170 8-55 (207)
83 2jx3_A Protein DEK; alpha heli 92.5 0.13 4.3E-06 47.1 4.9 46 5-50 66-111 (131)
84 2djb_A Polycomb group ring fin 92.3 0.09 3.1E-06 42.0 3.3 53 359-416 13-66 (72)
85 2ysl_A Tripartite motif-contai 92.2 0.14 4.8E-06 40.6 4.3 56 358-416 17-73 (73)
86 2csy_A Zinc finger protein 183 92.2 0.3 1E-05 39.7 6.5 56 360-422 14-70 (81)
87 2yur_A Retinoblastoma-binding 91.3 0.09 3.1E-06 42.4 2.3 52 359-413 13-65 (74)
88 3hcs_A TNF receptor-associated 91.3 0.14 4.9E-06 47.7 3.9 68 356-428 13-81 (170)
89 2ecv_A Tripartite motif-contai 90.7 0.31 1E-05 39.4 5.0 63 358-421 16-80 (85)
90 4bbq_A Lysine-specific demethy 90.7 0.095 3.3E-06 46.2 2.1 42 125-169 73-114 (117)
91 2ro1_A Transcription intermedi 90.7 0.14 5E-06 49.2 3.4 45 115-169 4-49 (189)
92 3l11_A E3 ubiquitin-protein li 90.4 0.14 4.8E-06 44.6 2.8 64 361-428 15-85 (115)
93 2egp_A Tripartite motif-contai 90.0 0.018 6.3E-07 46.5 -3.0 57 361-420 12-73 (79)
94 1rmd_A RAG1; V(D)J recombinati 89.0 0.3 1E-05 42.5 3.9 66 358-428 20-87 (116)
95 3knv_A TNF receptor-associated 88.4 0.1 3.5E-06 47.8 0.4 72 352-428 22-103 (141)
96 2ysm_A Myeloid/lymphoid or mix 88.0 0.54 1.9E-05 41.0 4.8 47 114-167 8-55 (111)
97 4ayc_A E3 ubiquitin-protein li 88.0 0.24 8.2E-06 44.8 2.6 60 361-425 53-114 (138)
98 1g25_A CDK-activating kinase a 86.5 0.57 2E-05 36.4 3.8 52 362-417 4-60 (65)
99 2xeu_A Ring finger protein 4; 85.3 0.38 1.3E-05 36.8 2.1 50 362-416 4-60 (64)
100 3ng2_A RNF4, snurf, ring finge 85.2 0.44 1.5E-05 37.3 2.5 50 362-416 11-67 (71)
101 2ect_A Ring finger protein 126 84.9 0.45 1.6E-05 38.2 2.5 51 361-416 15-68 (78)
102 1chc_A Equine herpes virus-1 r 84.6 0.61 2.1E-05 36.3 3.0 45 362-411 6-51 (68)
103 2ct2_A Tripartite motif protei 83.6 0.79 2.7E-05 37.3 3.4 51 361-414 15-70 (88)
104 2d8t_A Dactylidin, ring finger 83.1 0.32 1.1E-05 38.6 0.8 49 361-414 15-63 (71)
105 1x4j_A Ring finger protein 38; 80.6 0.74 2.5E-05 36.8 2.1 47 362-413 24-73 (75)
106 2ecm_A Ring finger and CHY zin 80.1 1.4 4.7E-05 32.7 3.4 44 362-410 6-53 (55)
107 2do5_A Splicing factor 3B subu 79.1 2.1 7.3E-05 32.8 4.0 31 16-46 13-43 (58)
108 2ysj_A Tripartite motif-contai 78.4 1.7 5.8E-05 33.3 3.5 47 357-406 16-63 (63)
109 2ep4_A Ring finger protein 24; 76.8 1.2 4E-05 35.4 2.2 46 361-411 15-63 (74)
110 4ap4_A E3 ubiquitin ligase RNF 76.6 1.4 5E-05 38.2 3.0 51 361-416 7-64 (133)
111 3v43_A Histone acetyltransfera 75.7 0.7 2.4E-05 40.7 0.6 40 124-167 23-62 (112)
112 2ecj_A Tripartite motif-contai 74.9 3 0.0001 31.1 4.0 45 359-406 13-58 (58)
113 1bor_A Transcription factor PM 74.7 1.2 4.2E-05 33.8 1.7 46 361-414 6-51 (56)
114 1e4u_A Transcriptional repress 71.3 4.9 0.00017 32.9 4.7 51 362-415 12-65 (78)
115 1iym_A EL5; ring-H2 finger, ub 71.3 2.5 8.6E-05 31.2 2.7 45 362-411 6-54 (55)
116 1a62_A RHO; transcription term 70.4 3.7 0.00013 37.3 4.1 38 9-46 4-43 (130)
117 2ea6_A Ring finger protein 4; 69.9 2.1 7.3E-05 32.9 2.1 47 360-411 14-67 (69)
118 2kiz_A E3 ubiquitin-protein li 68.9 2.7 9.1E-05 32.7 2.5 47 361-412 14-63 (69)
119 1v87_A Deltex protein 2; ring- 68.0 2.8 9.6E-05 36.0 2.7 48 363-410 27-92 (114)
120 2kwj_A Zinc finger protein DPF 66.4 1.6 5.6E-05 38.4 0.8 40 124-167 20-59 (114)
121 1kcf_A Hypothetical 30.2 KD pr 64.9 4.3 0.00015 40.9 3.7 33 12-44 2-34 (258)
122 2ecg_A Baculoviral IAP repeat- 64.2 2.1 7.1E-05 34.4 1.0 46 358-412 22-68 (75)
123 4ic3_A E3 ubiquitin-protein li 61.4 2.1 7.2E-05 34.4 0.5 42 361-411 24-66 (74)
124 4ap4_A E3 ubiquitin ligase RNF 59.8 3.5 0.00012 35.7 1.7 51 361-416 72-129 (133)
125 2riq_A Poly [ADP-ribose] polym 59.7 11 0.00036 35.6 5.1 45 2-46 29-74 (160)
126 1y02_A CARP2, FYVE-ring finger 59.0 13 0.00046 33.2 5.4 39 8-46 73-113 (120)
127 2ecl_A Ring-box protein 2; RNF 56.7 5.7 0.00019 32.3 2.4 33 378-415 46-79 (81)
128 1weq_A PHD finger protein 7; s 56.4 9.5 0.00033 32.3 3.8 48 112-169 25-79 (85)
129 2vje_B MDM4 protein; proto-onc 55.9 4.6 0.00016 31.4 1.6 45 363-411 9-55 (63)
130 2ecn_A Ring finger protein 141 53.7 2.6 8.7E-05 32.9 -0.2 48 361-414 15-62 (70)
131 2lbm_A Transcriptional regulat 50.9 7.1 0.00024 36.0 2.3 52 113-169 63-117 (142)
132 2e61_A Zinc finger CW-type PWW 50.4 14 0.00049 29.9 3.8 42 124-176 15-56 (69)
133 2vje_A E3 ubiquitin-protein li 49.5 7.6 0.00026 30.2 2.0 45 363-411 10-56 (64)
134 2l0b_A E3 ubiquitin-protein li 49.1 8.6 0.00029 31.8 2.4 47 361-412 40-89 (91)
135 1zbh_A 3'-5' exonuclease ERI1; 48.2 20 0.00067 36.3 5.4 45 4-48 19-63 (299)
136 1x4j_A Ring finger protein 38; 48.1 4.7 0.00016 31.9 0.6 46 113-169 23-69 (75)
137 2yrc_A Protein transport prote 47.6 2.3 7.9E-05 33.5 -1.3 14 396-409 29-42 (59)
138 3vk6_A E3 ubiquitin-protein li 47.2 8.7 0.0003 33.5 2.1 45 363-410 3-47 (101)
139 2yho_A E3 ubiquitin-protein li 41.8 6.6 0.00023 32.0 0.5 41 362-411 19-60 (79)
140 1wim_A KIAA0161 protein; ring 41.5 6.1 0.00021 32.9 0.3 53 361-413 5-67 (94)
141 6rxn_A Rubredoxin; electron tr 41.1 7.2 0.00025 29.3 0.6 12 398-409 28-39 (46)
142 3t6p_A Baculoviral IAP repeat- 39.6 6.9 0.00024 41.0 0.4 44 359-411 293-337 (345)
143 2k5c_A Uncharacterized protein 38.8 3.9 0.00013 34.5 -1.4 16 401-416 9-24 (95)
144 2ea5_A Cell growth regulator w 38.1 17 0.00057 28.7 2.4 41 362-411 16-57 (68)
145 2j9u_B VPS36, vacuolar protein 38.0 9.8 0.00034 31.5 1.0 10 398-407 15-24 (76)
146 2out_A MU-like prophage flumu 34.6 19 0.00067 32.7 2.4 32 11-42 89-122 (131)
147 1e8j_A Rubredoxin; iron-sulfur 33.0 13 0.00044 28.5 0.9 12 398-409 34-45 (52)
148 2v3b_B Rubredoxin 2, rubredoxi 32.9 13 0.00043 28.9 0.8 12 398-409 34-45 (55)
149 4rxn_A Rubredoxin; electron tr 32.8 12 0.00039 29.1 0.5 12 398-409 34-45 (54)
150 2y1n_A E3 ubiquitin-protein li 32.6 17 0.00059 38.7 2.0 50 361-415 332-382 (389)
151 1yk4_A Rubredoxin, RD; electro 31.7 13 0.00043 28.6 0.6 12 398-409 33-44 (52)
152 2kn9_A Rubredoxin; metalloprot 30.0 15 0.0005 30.9 0.8 11 399-409 59-69 (81)
153 1dx8_A Rubredoxin; electron tr 29.2 14 0.00049 30.0 0.6 12 398-409 38-49 (70)
154 3dpl_R Ring-box protein 1; ubi 27.4 30 0.001 29.9 2.3 33 376-412 69-101 (106)
155 2w51_A Protein arMet; MANF, CD 26.4 7 0.00024 36.6 -2.0 36 11-46 108-145 (158)
156 2lq6_A Bromodomain-containing 26.1 25 0.00086 29.5 1.6 33 114-147 18-51 (87)
157 1s24_A Rubredoxin 2; electron 25.7 20 0.00068 30.4 0.9 13 398-410 66-78 (87)
158 2m0e_A Zinc finger and BTB dom 25.2 27 0.00093 20.6 1.2 13 400-412 2-14 (29)
159 2kvh_A Zinc finger and BTB dom 24.7 22 0.00075 21.2 0.7 13 399-411 2-14 (27)
160 2jvx_A NF-kappa-B essential mo 24.4 23 0.00079 23.9 0.8 12 399-410 2-13 (28)
161 3l0o_A Transcription terminati 24.3 67 0.0023 34.6 4.7 39 9-47 11-51 (427)
162 3k1l_B Fancl; UBC, ring, RWD, 23.8 35 0.0012 36.1 2.5 55 117-174 313-375 (381)
163 1sfu_A 34L protein; protein/Z- 23.2 26 0.00089 28.9 1.1 40 2-46 12-54 (75)
164 1ard_A Yeast transcription fac 23.0 28 0.00097 20.6 1.0 13 400-412 2-14 (29)
165 1p7a_A BF3, BKLF, kruppel-like 22.9 29 0.00099 22.3 1.1 14 399-412 10-23 (37)
166 1klr_A Zinc finger Y-chromosom 22.6 32 0.0011 20.4 1.2 13 400-412 2-14 (30)
167 2l0b_A E3 ubiquitin-protein li 21.4 32 0.0011 28.3 1.3 49 113-172 40-89 (91)
168 2kvf_A Zinc finger and BTB dom 20.8 29 0.001 20.6 0.7 13 400-412 3-15 (28)
169 2elr_A Zinc finger protein 406 20.8 31 0.0011 21.9 0.9 14 399-412 8-21 (36)
170 3ql9_A Transcriptional regulat 20.5 40 0.0014 30.5 1.8 52 113-169 57-111 (129)
171 2lvu_A Zinc finger and BTB dom 25.7 22 0.00074 20.9 0.0 13 400-412 2-14 (26)
172 1eh2_A EPS15; calcium binding, 20.1 2.8E+02 0.0095 23.3 7.1 52 16-79 33-84 (106)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=1.7e-55 Score=462.44 Aligned_cols=310 Identities=21% Similarity=0.405 Sum_probs=211.6
Q ss_pred cccccCCccceeecccccceeeeecccCCCCCCCceeeeEEEEeChhhHHhhcCC---------CeeEEE---EEEecCC
Q 007366 166 CRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQ---------EYDVQA---WCMLLND 233 (606)
Q Consensus 166 Crl~r~DPF~~~i~~ll~Pv~l~~s~i~~~G~~~~qs~~~~F~Lt~~~~~~L~~~---------~~~lql---~C~~l~d 233 (606)
-+++ .+|||+++++|++|+.|.++ ++...|+..|.|.||++|...++.. +|++|| ||.. ++
T Consensus 18 ~~~k-~lPFy~v~~~l~~Pt~L~~~-----~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRfC~~-~~ 90 (360)
T 4fo9_A 18 GQLK-NLPFYDVLDVLIKPTSLVQS-----SIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLA-ET 90 (360)
T ss_dssp CCBC-CCTTEEEEEEEEEEEECCCC-----SSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEEEEC--C
T ss_pred ceec-CCCchHhHhhhcCceecccc-----cCcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEEEEc-cC
Confidence 3455 47999999999999999764 3467899999999999999888642 355554 4766 46
Q ss_pred CCcccccCCCceEEEEcCeEeecccCCCCCCCCCC-CCCCCCC-cccCcCCC---ccEEEEEEe-c-CceEEEEEEEEEe
Q 007366 234 KVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGAN-GRDDGPI-ITPWTKDG---INKIVLTGC-D-ARIFCLGVRIVKR 306 (606)
Q Consensus 234 ~~~~~~~wP~~~~l~VNg~~v~~~~Rp~~~~~g~~-gR~~~pi-IT~~lk~g---~N~I~it~~-d-~~~y~~~V~lVk~ 306 (606)
..++++.||.+++|+|||+.|+..+.-..++.|.. +|...|+ ||++++.+ .|+|+|+|. + .+.|+++||+|++
T Consensus 91 ~~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~lV~~ 170 (360)
T 4fo9_A 91 SCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQ 170 (360)
T ss_dssp -CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEEEEEE
T ss_pred CCcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEEEEEe
Confidence 67889999999999999999997532112344443 5566666 99999987 599999997 3 6899999999999
Q ss_pred cCHHHHHHhcccCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCCcceEeecceeeecCCCCcccccccccCCCCCccccc
Q 007366 307 RSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCF 386 (606)
Q Consensus 307 ~s~e~Ll~~I~~~~~~~~~e~al~rIkr~l~~~~~~~n~d~DdD~eIv~~~~~vSL~CPls~~ri~~P~Rg~~C~HlqCF 386 (606)
+++++|++.|+++ ...+.++++++|++.+. .|+|+||+++++.|||+||||++||++|+||..|.|+|||
T Consensus 171 ~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~---------~d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCF 240 (360)
T 4fo9_A 171 LTSAMLLQRLKMK-GIRNPDHSRALIKEKLT---------ADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCF 240 (360)
T ss_dssp CCHHHHHHHHHTC--CBCHHHHHHHHHHHHC------------------CCEEEESBCTTTCSBCSSEEEETTCCCCCCE
T ss_pred CCHHHHHHHHHhc-CCCCHHHHHHHHHHHhc---------cCCccceeeeeeEEeeeCCCccceeccCCcCCCCCCCccC
Confidence 9999999999864 35678899999999874 1334468889999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhhcCCCCeeEEEEeeCCceEeccCCCcccccccccCCCC
Q 007366 387 DLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMRNCGEDITELEVKPDGSWRVKTRSESDRREIGDLASWH 466 (606)
Q Consensus 387 Dl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e~~~~~~~~~~~~~ 466 (606)
||++||+|+++.++|+||||++.+++++|+||+||++||+ .+ .++++|+|++||+|++..+..+ ..|+ ...||.
T Consensus 241 Dl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~---~~-~~v~~I~v~~DGsW~p~~~k~e-~~~~-~~~~~~ 314 (360)
T 4fo9_A 241 DAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN---DC-SDVDEIKFQEDGSWCPMRPKKE-AMKV-SSQPCT 314 (360)
T ss_dssp EHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT---TC-SSCCEEEECC-CCEEC------------------
T ss_pred CHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH---hC-CCCCEEEECCCCceecCCCCcc-cccc-cCCCCC
Confidence 9999999999999999999999999999999999999954 45 4899999999999998755543 3343 556777
Q ss_pred CCCCCCccC-------CCCCCCchhhhhhhhhccccCCCC
Q 007366 467 FPDGSLCAP-------AGGEDKPKVEMLKHVRQEGVSEGH 499 (606)
Q Consensus 467 ~~dg~~~~~-------~~~~~~~~~~~~~~~~~e~~s~~~ 499 (606)
..||...++ +....++++|++ .|+-|.+||..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~s~~~ 353 (360)
T 4fo9_A 315 KIESSSVLSKPCSVTVASEASKKKVDVI-DLTIESSSDEE 353 (360)
T ss_dssp ----------------------------------------
T ss_pred CcccccccccccccCCCccccCCCccEE-EecccCccccC
Confidence 777765532 222334577876 68888877654
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-54 Score=453.78 Aligned_cols=264 Identities=22% Similarity=0.379 Sum_probs=217.6
Q ss_pred cCCccceeecccccceeeeecccCCCCCCCceeeeEEEEeChhhHHhhcC--CCeeEEEEEEecCCC---CcccccCCCc
Q 007366 170 RADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSK--QEYDVQAWCMLLNDK---VPFRMQWPQY 244 (606)
Q Consensus 170 r~DPF~~~i~~ll~Pv~l~~s~i~~~G~~~~qs~~~~F~Lt~~~~~~L~~--~~~~lql~C~~l~d~---~~~~~~wP~~ 244 (606)
+..|||+++..+-..+..... .+.+..+.+.|.|+++++++|++ ++|+|+|||+..++. ...+++||..
T Consensus 69 k~SPFY~i~~~i~~~~~~~~~------~~~R~~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~fP~~ 142 (371)
T 3i2d_A 69 KESPFYKIQRLIPELVMNVEV------TGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFP 142 (371)
T ss_dssp CCBTTEEEEEEEEEEEEEECC------EEEEEEEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCCCCSS
T ss_pred cCCCCceeeeecCCccccccc------cCCCCEEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCeecCCc
Confidence 679999877554332222211 12345788999999999999984 689999999998752 3567999999
Q ss_pred eEEEEcCeEeecccCCCCCCCCCCCCCCCCCcccCcCCC--ccEEEEEEe-cCceEEEEEEEEEecCHHHHHHhcccCCC
Q 007366 245 ADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDG--INKIVLTGC-DARIFCLGVRIVKRRSVQQVLNLIPKESE 321 (606)
Q Consensus 245 ~~l~VNg~~v~~~~Rp~~~~~g~~gR~~~piIT~~lk~g--~N~I~it~~-d~~~y~~~V~lVk~~s~e~Ll~~I~~~~~ 321 (606)
++|+|||..|+.+.|+. ++++|+..|.+||++++.+ .|+|+|+|. +.+.|+++|++|+++++++|++.|.+++
T Consensus 143 ~eI~VNg~~vk~n~rGl---Knk~Gt~~PvDIT~~lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~~~~- 218 (371)
T 3i2d_A 143 NELRCNNVQIKDNIRGF---KSKPGTAKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHP- 218 (371)
T ss_dssp EEEEETTEECCSCCSSC---TTSCGGGSCEECGGGCCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHHTSC-
T ss_pred eEEEECCEEeccccccC---CCCCCCcCCCCchhhhccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHHhcC-
Confidence 99999999999877764 3567777777799999975 799999996 6789999999999999999999998753
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCCCCCCCCcceEeecceeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCee
Q 007366 322 GEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKW 401 (606)
Q Consensus 322 ~~~~e~al~rIkr~l~~~~~~~n~d~DdD~eIv~~~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W 401 (606)
.++.++++++|++.++. |+|+||+++++.|||+||||++||++|+||..|.|+|||||++||+|+++.++|
T Consensus 219 ~i~~e~tl~~Ik~~ls~---------d~DdDIv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W 289 (371)
T 3i2d_A 219 KIIKQATLLYLKKTLRE---------DEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTW 289 (371)
T ss_dssp CBCHHHHHHHHHHHHHS---------CC------CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHhcc---------CCCCceeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCce
Confidence 57788899999998741 334458889999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCeeecHHHHHHHHHhhcCCCCeeEEEEeeCCceEeccCCCcc
Q 007366 402 QCPICLRNYSLENIIIDPYFNRITSKMRNCGEDITELEVKPDGSWRVKTRSESD 455 (606)
Q Consensus 402 ~CPiC~k~~~~~~L~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e~~ 455 (606)
+||||++.+.+++|+||+||++| |+.+++++++|+|++||+|++..+++++
T Consensus 290 ~CPIC~k~~~~~dL~ID~~~~~I---L~~~~~dve~V~v~~DGsW~p~~e~~~d 340 (371)
T 3i2d_A 290 QCPVCQIDIALENLAISEFVDDI---LQNCQKNVEQVELTSDGKWTAILEDDDD 340 (371)
T ss_dssp BCTTTCCBCCGGGEEEBHHHHHH---HTTSCTTCCEEEEETTSCEEECC-----
T ss_pred eCCCCCcccCHHHeeEcHHHHHH---HHhccCCccEEEECCCCCEEeccCCcCC
Confidence 99999999999999999999999 5567889999999999999999988654
No 3
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=100.00 E-value=2.1e-33 Score=241.82 Aligned_cols=101 Identities=57% Similarity=0.894 Sum_probs=96.5
Q ss_pred chHHHHHHHHHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccchhhhhh--cccCCCCcHHHHHHHHHHHHHHhhcc
Q 007366 2 DLIASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKM--WAKKSPVSKEEVAKLVDDTHRKLQVS 79 (606)
Q Consensus 2 ~~~~~~~~~l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~~~~~~--~~~~~~~~~~~~~k~i~~~Y~~m~~~ 79 (606)
||+++||.+|.||||||||+||.+||||||||||+||||||++|+|++.++. |++|+++++|+|+|+|||+|||||++
T Consensus 8 dl~~~Ck~kl~~frikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~~~~~~~K~~v~kE~vaKIVDDtYRKMqvS 87 (110)
T 2rno_A 8 DLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTYRKMQIQ 87 (110)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTTSCCCSTTGGGSHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcccccccccccccHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999999999999999998875 89999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCcccccccc
Q 007366 80 VAPDLASKGGQGVSNSSNIKIKGEM 104 (606)
Q Consensus 80 ~~~~~~s~~~~~~~~~~~~~p~~~~ 104 (606)
||+++||++ +++|+++ ++|++|+
T Consensus 88 gAtDLASk~-q~~sd~s-~k~k~E~ 110 (110)
T 2rno_A 88 CAPDLATRS-HSGSDFS-FRPIEEA 110 (110)
T ss_dssp TCCCSCTTC-SSCSSSC-SCCCTTC
T ss_pred CCccccccC-ccccCcc-cccCCCC
Confidence 999999999 8889987 8888763
No 4
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.47 E-value=2.2e-14 Score=117.66 Aligned_cols=66 Identities=59% Similarity=1.238 Sum_probs=56.9
Q ss_pred ccCCCCCceeccCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCC
Q 007366 106 DYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRAD 172 (606)
Q Consensus 106 ~~~~~~~~~rCiC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~D 172 (606)
++.+++..+||+|+.....+.||+|++.+|..|||..||++..++... ...|++|||+.||+.|+|
T Consensus 3 d~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~-~~~p~~~~C~~Cr~~r~D 68 (68)
T 2rsd_A 3 DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGES-AEVPPVFYCELCRLSRAD 68 (68)
T ss_dssp SCCCSSCEECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSC-CCCCSSCCCHHHHHHHTC
T ss_pred CCcCCCCCEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccc-cCCCCcEECcCccCcccC
Confidence 556788899999999888899999998789999999999998776433 346789999999999876
No 5
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.45 E-value=8.5e-14 Score=111.45 Aligned_cols=63 Identities=25% Similarity=0.378 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccchhhhhhcccCCCCcHHHHHHHHHHHHHH
Q 007366 1 MDLIASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRK 75 (606)
Q Consensus 1 ~~~~~~~~~~l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~~~~~~~~~~~~~~~~~~~k~i~~~Y~~ 75 (606)
|.-...|+.||.+|||.||+.+|+..|.+|+|||+||+.|+|.+|...++ +++..+|.|+|++
T Consensus 1 ~~~~~el~~Mv~sfRVsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~~~s------------~~v~~KIrELy~~ 63 (65)
T 1v66_A 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCS------------PAVQMKIKELYRR 63 (65)
T ss_dssp CCCTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCC------------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHcCCC------------HHHHHHHHHHHHh
Confidence 44467899999999999999999999999999999999999999998875 4788999999975
No 6
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.42 E-value=1.1e-13 Score=116.34 Aligned_cols=71 Identities=62% Similarity=1.290 Sum_probs=60.8
Q ss_pred cccccCCCCCceeccCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCc
Q 007366 103 EMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADP 173 (606)
Q Consensus 103 ~~~~~~~~~~~~rCiC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~DP 173 (606)
+.++.+.++..+||+|+.....+.||+|+++.|..|||..||+++.+++.+.+..|..|||+.|+..+.+|
T Consensus 6 ~~dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 6 SGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCSSSCCCCCCCSSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred ccccccCCCCCEEeECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 44566777889999999997789999999666999999999999988765556678999999999988665
No 7
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.98 E-value=7.8e-10 Score=95.71 Aligned_cols=64 Identities=25% Similarity=0.653 Sum_probs=51.2
Q ss_pred cccccccccCCCCCceeccCCCCCCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 99 KIKGEMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 99 ~p~~~~~~~~~~~~~~rCiC~~sl~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
.|.........++...||+|++.. ++.||+|++.+|. .|||..||++...| +++|||+.|+..+
T Consensus 22 ~p~~~~~~~~d~~e~~yCiC~~~~-~g~MI~CD~~dC~~~WfH~~CVgl~~~p-------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 22 HPSDVLDMPVDPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 86 (91)
T ss_dssp CCCCCCSCCCCSCCCBCSTTCCBC-CSCCCCCSCSSCSCCCCCSTTTTCSSCC-------CSSCCCTTTCCCC
T ss_pred CccccccCCcCCCCCcEEECCCCC-CCCEeEecCCCCCCCCEecccCCcCcCC-------CCCEECcCccCcC
Confidence 444344445567789999999875 5899999997787 79999999998765 5789999998764
No 8
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.92 E-value=6.6e-10 Score=91.19 Aligned_cols=53 Identities=38% Similarity=0.837 Sum_probs=45.3
Q ss_pred CCCCceeccCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 109 QSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 109 ~~~~~~rCiC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
.+...+||+|+.....+.||+|+. |..|||..||++...+ .|+.|+|+.|+..
T Consensus 15 ~~~~~~~CiC~~~~~~~~MIqCd~--C~~WfH~~Cvgi~~~~------~~~~~~C~~C~~s 67 (68)
T 3o70_A 15 YFQGLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRDS 67 (68)
T ss_dssp TTTTCCCSTTCCCCTTCCEEECTT--TCCEEETTTTTCCTTS------CCSSCCCHHHHTC
T ss_pred CCCCceEeECCCcCCCCCEEECCC--CCccccccccCcCccc------CCCcEECCCCCCC
Confidence 456689999999876668999999 9999999999998653 3689999999864
No 9
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.91 E-value=4.2e-10 Score=87.41 Aligned_cols=49 Identities=39% Similarity=0.922 Sum_probs=42.6
Q ss_pred CceeccCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007366 112 TKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 112 ~~~rCiC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl 168 (606)
+.+||+|+.....+.||+|+. |..|||..||++...+ .|+.|+|+.|+.
T Consensus 3 d~~~C~C~~~~~~~~MI~Cd~--C~~W~H~~Cvgi~~~~------~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCTTCCEEECTT--TCCEEETTTTTCCGGG------CCSSCCCHHHHT
T ss_pred cCeEEEeCCcCCCCCEEEcCC--CCccccccccCCCccc------CCCcEECcCCCC
Confidence 368999999876779999999 9999999999998653 368999999974
No 10
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.82 E-value=3.3e-09 Score=92.90 Aligned_cols=54 Identities=31% Similarity=0.826 Sum_probs=46.1
Q ss_pred CCCceeccCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccC
Q 007366 110 SDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRA 171 (606)
Q Consensus 110 ~~~~~rCiC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~ 171 (606)
.+..+||+|+.....+.||+|+. |..|||..|++++... .|+.|+|+.|+....
T Consensus 25 ~~d~vrCiC~~~~~~~~mi~Cd~--C~~w~H~~C~~~~~~~------~p~~w~C~~C~~~~~ 78 (98)
T 2lv9_A 25 GTDVTRCICGFTHDDGYMICCDK--CSVWQHIDCMGIDRQH------IPDTYLCERCQPRNL 78 (98)
T ss_dssp CCCBCCCTTSCCSCSSCEEEBTT--TCBEEETTTTTCCTTS------CCSSBCCTTTSSSCC
T ss_pred CCCCEEeECCCccCCCcEEEcCC--CCCcCcCcCCCCCccC------CCCCEECCCCcCCCC
Confidence 45679999999988899999999 9999999999987543 467899999987653
No 11
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.80 E-value=1.6e-09 Score=87.33 Aligned_cols=54 Identities=33% Similarity=0.831 Sum_probs=44.0
Q ss_pred CCCCceeccCCCCCCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 109 ~~~~~~rCiC~~sl~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
.++...+|+|++.. ++.||+|+..+|. .|||..||+++..| .+.|||+.|+..+
T Consensus 7 d~~e~~yC~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 7 DPNEPTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVSLTYKP-------KGKWYCPKCRGDN 61 (62)
T ss_dssp ---CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHTCC
T ss_pred CCCCCcEEECCCCC-CCCeeeeeCCCCCcccEecccCCcCcCC-------CCCEECcCcccCC
Confidence 45678999999874 6899999996676 89999999998765 5799999998765
No 12
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.9e-09 Score=108.06 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=69.2
Q ss_pred CcceEeecceeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccC--CCCCCCCCCeeecHHHHHHHHH
Q 007366 350 DLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPI--CLRNYSLENIIIDPYFNRITSK 427 (606)
Q Consensus 350 D~eIv~~~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPi--C~k~~~~~~L~ID~y~~~IL~~ 427 (606)
|.||++++..++|+|||++..|+.|+++..|.|. |+...+..+-+..+.|.||+ |.+.+...+|+.|..+.++++.
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHs--FcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEAPLISRKCNHV--FDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCE--EEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred CccceecCCceeeECcCccCcccCCeeeCCCCCc--ccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 3457778899999999999999999999999996 99999999877778899999 9999999999999999888764
Q ss_pred h
Q 007366 428 M 428 (606)
Q Consensus 428 l 428 (606)
.
T Consensus 248 ~ 248 (267)
T 3htk_C 248 A 248 (267)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.79 E-value=1.8e-09 Score=86.20 Aligned_cols=54 Identities=31% Similarity=0.826 Sum_probs=43.6
Q ss_pred CCCCceeccCCCCCCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 109 ~~~~~~rCiC~~sl~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
.++...+|+|++.. ++.||+|++.+|. .|+|..||+++..| .+.|||+.|+.+|
T Consensus 5 d~~e~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvgl~~~p-------~~~w~Cp~C~~~r 59 (59)
T 3c6w_A 5 GSNEPTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVDLTTKP-------KGKWFCPRCVQEK 59 (59)
T ss_dssp ---CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHCC-
T ss_pred CCCCCcEEECCCCC-CCCeeEeeCCCCCCCCEecccCCcccCC-------CCCEECcCccCcC
Confidence 35668999999875 6899999998888 69999999998765 4789999998653
No 14
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.76 E-value=7.7e-09 Score=85.54 Aligned_cols=54 Identities=28% Similarity=0.769 Sum_probs=45.7
Q ss_pred CCCCceeccCCCCCCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 109 ~~~~~~rCiC~~sl~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
.++...+|+|++.. ++.||.|+..+|. .|||..||++...| .+.|||+.|+..+
T Consensus 12 d~~~~~~C~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvgl~~~p-------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCSTTCCCS-CSSEECCSCSSCSCCCEETTTTTCSSCC-------SSCCCCTTTSSCS
T ss_pred CCCCCCEEECCCCC-CCCEeEeeCCCCCCccEecccCCcCcCC-------CCCEECCCCCccc
Confidence 45668999999875 5899999997788 69999999998765 4789999998764
No 15
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.76 E-value=3.2e-09 Score=87.76 Aligned_cols=54 Identities=31% Similarity=0.758 Sum_probs=44.7
Q ss_pred CCCceeccCCCCCCCC-CeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 110 SDTKVCCPCGSSLETE-SMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 110 ~~~~~rCiC~~sl~~~-~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
.+..+||+|+.....+ .||+|+. |..|||..||++...+ ..|..|+|+.|+..+
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~--C~~W~H~~Cvg~~~~~-----~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDG--CGVWHHTRCIGINNAD-----ALPSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSS--SCEEEETTTTTCCTTS-----CCCSCCCCHHHHHHC
T ss_pred CCcceEeeCCCccCCCCcEEECCC--CCCccCCeeeccCccc-----cCCCcEECCCccCCC
Confidence 4568999999986444 6999998 9999999999998643 247899999998764
No 16
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.74 E-value=3.1e-09 Score=89.38 Aligned_cols=60 Identities=27% Similarity=0.517 Sum_probs=48.1
Q ss_pred CCCceeccCCCCCC-CCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCccc
Q 007366 110 SDTKVCCPCGSSLE-TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFW 175 (606)
Q Consensus 110 ~~~~~rCiC~~sl~-~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~DPF~ 175 (606)
....+||+|+.... .+.||+|+. |..|||..||++...+. ..++.|+|+.|+..+.-++.
T Consensus 9 ~~~~~~C~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~~~~~~ 69 (79)
T 1wep_A 9 ALVPVYCLCRQPYNVNHFMIECGL--CQDWFHGSCVGIEEENA----VDIDIYHCPDCEAVFGPSIM 69 (79)
T ss_dssp CCCCCCSTTSCSCCSSSCEEEBTT--TCCEEEHHHHTCCHHHH----TTCSBBCCTTTTTTSCSCBC
T ss_pred cCCccEEEcCCccCCCCceEEcCC--CCCcEEeeecCcccccc----cCCCeEECCCcccccCCCce
Confidence 45579999999853 789999998 99999999999986542 12579999999988654443
No 17
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.69 E-value=3.2e-09 Score=88.45 Aligned_cols=60 Identities=28% Similarity=0.638 Sum_probs=46.9
Q ss_pred CCCceeccCCCCC-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCccc
Q 007366 110 SDTKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFW 175 (606)
Q Consensus 110 ~~~~~rCiC~~sl-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~DPF~ 175 (606)
+...+||+|+... ..+.||+|+. |..|||..||++...+. ..++.|+|+.|+....-++.
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~--C~~WfH~~Cvg~~~~~~----~~~~~~~C~~C~~~~~~~~~ 67 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDA--CKDWFHGSCVGVEEEEA----PDIDIYHCPNCEKTHGKSTL 67 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCTTTG----GGBSSCCCHHHHHHHCCCCB
T ss_pred CCCeeEEECCCcCCCCCCEEEcCC--CCCCEeccccccccccc----CCCCEEECCCCcccCCCCeE
Confidence 3457999999874 3679999998 99999999999987641 22478999999987544333
No 18
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.68 E-value=6.1e-09 Score=83.33 Aligned_cols=54 Identities=30% Similarity=0.799 Sum_probs=42.6
Q ss_pred CCCCceeccCCCCCCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 109 ~~~~~~rCiC~~sl~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
.++...+|+|++.. ++.||.|+..+|. .|+|..||+++..| .+.|||+.|+.+|
T Consensus 6 d~~e~~~C~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvgl~~~p-------~g~w~C~~C~~~r 60 (60)
T 2vnf_A 6 DPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQER 60 (60)
T ss_dssp ---CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHC--
T ss_pred CCCCCCEEECCCcC-CCCEEEeCCCCCCCceEehhcCCCCcCC-------CCCEECcCccCcC
Confidence 45668999999875 5899999996677 79999999998765 4789999998653
No 19
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.67 E-value=9.3e-09 Score=82.82 Aligned_cols=55 Identities=29% Similarity=0.601 Sum_probs=45.0
Q ss_pred CCCceec-cCCCCC-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 110 SDTKVCC-PCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 110 ~~~~~rC-iC~~sl-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
++...+| +|+... ..+.||+|+. |..|||..||++...+. ..+..|+|+.|+.++
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDL--CEMWFHGKCVKITPARA----EHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSS--SCCEEETTTTTCCTTGG----GGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccC--CCCCCCccccCcChhHh----cCCCcEECCCCcCcC
Confidence 3457899 999885 3688999998 99999999999987642 235799999999875
No 20
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.66 E-value=7.5e-10 Score=92.34 Aligned_cols=57 Identities=26% Similarity=0.524 Sum_probs=44.6
Q ss_pred CceeccCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 112 TKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 112 ~~~rCiC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
..+||+|+.....+.||+|+. |..|||..||++...+...+...+..|+|+.|+..+
T Consensus 15 ~~~~C~C~~~~~~~~MI~Cd~--C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYCICRQPHNNRFMICCDR--CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCSTTCCCCCSSCEEECSS--SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEEECCCccCCCCEEEeCC--CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 369999999876679999998 999999999999754311111126799999998764
No 21
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=1.7e-08 Score=83.23 Aligned_cols=52 Identities=29% Similarity=0.736 Sum_probs=43.6
Q ss_pred CCCceeccCCCCCCCCCeeeecCCCC-CCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 110 SDTKVCCPCGSSLETESMIKCEDPRC-PVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 110 ~~~~~rCiC~~sl~~~~mI~C~~~~C-~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
++..+||+|++.. ++.||+|++.+| ..|||..||++...| .+.|||+.|+..
T Consensus 3 ~~~~~yC~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 3 SGSSGYCICNQVS-YGEMVGCDNQDCPIEWFHYGCVGLTEAP-------KGKWYCPQCTAA 55 (70)
T ss_dssp CSCCCCSTTSCCC-CSSEECCSCTTCSCCCEEHHHHTCSSCC-------SSCCCCHHHHHH
T ss_pred CCCCeEEEcCCCC-CCCEeEeCCCCCCccCCcccccccCcCC-------CCCEECCCCCcc
Confidence 5668999999884 679999999555 389999999998764 579999999865
No 22
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.52 E-value=4.6e-08 Score=84.43 Aligned_cols=52 Identities=31% Similarity=0.871 Sum_probs=41.8
Q ss_pred CCCCceeccCCCCCCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCcccccc-ccc
Q 007366 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEI-CRL 168 (606)
Q Consensus 109 ~~~~~~rCiC~~sl~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~-Crl 168 (606)
.++...||+|++.. ++.||.|++.+|. .|||..||+++..| .+.|||+. |+-
T Consensus 22 ~~~~~~yCiC~~~~-~g~MI~CD~c~C~~eWfH~~CVgl~~~p-------~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYCFCRNVS-YGPMVACDNPACPFEWFHYGCVGLKQAP-------KGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCSTTTCCC-SSSEECCCSSSCSCSCEETTTSSCSSCT-------TSCCCSSHHHHH
T ss_pred CCCCCcEEEeCCCC-CCCEEEecCCCCccccCcCccCCCCcCC-------CCCccCChhhcc
Confidence 45678999999875 5789999995555 79999999998765 36899999 973
No 23
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.22 E-value=4.3e-07 Score=75.25 Aligned_cols=53 Identities=30% Similarity=0.727 Sum_probs=42.9
Q ss_pred CCCceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 110 SDTKVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 110 ~~~~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
.+...+| +|+.......||.|+. |..|||..|++++..+ ...+.|||+.|+..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~--C~~wfH~~Cv~~~~~~-----~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDD--CDDWYHWPCVGIMAAP-----PEEMQWFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSS--SSSEEEHHHHTCSSCC-----CSSSCCCCTTTHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCC--CCcccccccCCCCccC-----CCCCCEEChhccCc
Confidence 3456889 8998865558999999 9999999999998654 11368999999865
No 24
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=2.1e-06 Score=76.78 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccchhhhhhcccCCCCcHHHHHHHHHH
Q 007366 4 IASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDD 71 (606)
Q Consensus 4 ~~~~~~~l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~~~~~~~~~~~~~~~~~~~k~i~~ 71 (606)
+.+....|..+.|.|||++|++.||+.+|+|+||++||.++|..... .+..+.++..++..+|..
T Consensus 30 ~~~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~---~g~~D~~rl~ai~~lI~~ 94 (114)
T 2rnn_A 30 VEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALV---VGKSDPYRVQAVKFLIER 94 (114)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTC---TTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhccc---cCCCCHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999987552 233445555555555543
No 25
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.19 E-value=2.1e-07 Score=102.37 Aligned_cols=56 Identities=29% Similarity=0.605 Sum_probs=46.2
Q ss_pred CCCCceeccCCCCC-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 109 QSDTKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 109 ~~~~~~rCiC~~sl-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
++...+||+|+... ..+.||+|+. |..|||..||++...+. ..++.|+|+.|+...
T Consensus 33 ~~~~~~yC~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 33 PPPPPVYCVCRQPYDVNRFMIECDI--CKDWFHGSCVGVEEHHA----VDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCCEETTTTEECCTTSCEEEBTT--TCCEEEHHHHTCCGGGG----GGEEEBCCHHHHHHH
T ss_pred CCCCCeEEeCCCcCCCCCCeEEccC--CCCceeeeecCcCcccc----cCCCEEECCCCcCCc
Confidence 45668999999874 3789999998 99999999999987641 235789999999764
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.18 E-value=1.8e-07 Score=89.11 Aligned_cols=55 Identities=31% Similarity=0.694 Sum_probs=43.8
Q ss_pred CCCceeccCCCCC-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 110 SDTKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 110 ~~~~~rCiC~~sl-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
++...+|+|+... ..+.||+|+. |..|||..|+++...+ ...++.|+|+.|+...
T Consensus 5 ~~~~~~C~C~~~~~~~~~mi~Cd~--C~~WfH~~Cv~~~~~~----~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYCICKTPEDESKFYIGCDR--CQNWYHGRCVGILQSE----AELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHH----HTTCSSCCCHHHHHHH
T ss_pred CCCCcEeeCCCCCCCCCCEeECCC--CCchhChhhcCCchhh----ccCccCeecCCCcchh
Confidence 4567999999874 4788999998 9999999999987543 1236799999999864
No 27
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.06 E-value=3.5e-07 Score=99.50 Aligned_cols=55 Identities=31% Similarity=0.645 Sum_probs=44.6
Q ss_pred CceeccCCCCC-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCC
Q 007366 112 TKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRAD 172 (606)
Q Consensus 112 ~~~rCiC~~sl-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~D 172 (606)
..+||+|+... ..+.||+|+. |..|||..||+++..+. ..++.|+|+.|+.....
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~--C~~WfH~~CVgi~~~~~----~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDM--CQDWFHGSCVGVEEEKA----ADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHHH----TTEEECCCHHHHHHHCC
T ss_pred CCeEEeCCCcCCCCCCeEEcCC--CCcccccccCCcCcccc----cCCCEEECCCCccccCC
Confidence 47899999874 3789999998 99999999999986531 12478999999987533
No 28
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=98.04 E-value=5.9e-07 Score=69.65 Aligned_cols=48 Identities=21% Similarity=0.555 Sum_probs=36.4
Q ss_pred eeccCCCCC-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007366 114 VCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 114 ~rCiC~~sl-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Cr 167 (606)
.-|+|+... ....||+|++ .|..|||..||++...+ ..+..|+|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~-----~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEM-----AENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHH-----HHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccc-----cCCCCEECCCCC
Confidence 457887765 3567999994 49999999999997543 124789999986
No 29
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.85 E-value=8.6e-06 Score=64.06 Aligned_cols=38 Identities=37% Similarity=0.574 Sum_probs=35.8
Q ss_pred HHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccch
Q 007366 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (606)
Q Consensus 11 l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~ 48 (606)
|..++|.|||+.|.+.||+.+|+|+||++||.++|...
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999998864
No 30
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.73 E-value=2.5e-05 Score=60.24 Aligned_cols=38 Identities=32% Similarity=0.594 Sum_probs=35.5
Q ss_pred HHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccch
Q 007366 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (606)
Q Consensus 11 l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~ 48 (606)
+..++|.|||+.|.+-||+.+|+|++|++|+.+++.++
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~e 47 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGP 47 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999998764
No 31
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.61 E-value=1.9e-05 Score=69.85 Aligned_cols=54 Identities=22% Similarity=0.585 Sum_probs=38.6
Q ss_pred ccCCCCC-CCCCeeeecCCCCCCcccccccccCCCCCCCC-CCCCCccccccccccc
Q 007366 116 CPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGN-PPVPELFYCEICRLSR 170 (606)
Q Consensus 116 CiC~~sl-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~-p~~P~~fyCe~Crl~r 170 (606)
.+|.+.. ..+.||+|++ .|..|||..||+++....+.+ +.....|+|+.|+..+
T Consensus 7 ~iC~~p~~~~~~mi~Cdd-~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 7 GACRSEVNDDQDAILCEA-SCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp TTTCSBCCTTSCEEECTT-TTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCccCCCCCEEEecC-CcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 3677763 4678999992 399999999999986322211 1114789999999875
No 32
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=97.58 E-value=4.6e-05 Score=59.02 Aligned_cols=39 Identities=31% Similarity=0.476 Sum_probs=35.8
Q ss_pred HHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccchh
Q 007366 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQ 49 (606)
Q Consensus 11 l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~~ 49 (606)
+..+.|.|||+.|..-||+.+|+|++|++|+......+.
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~ 43 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESK 43 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999877654
No 33
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=97.57 E-value=4.2e-05 Score=63.60 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=37.0
Q ss_pred HHHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccchh
Q 007366 10 KLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQ 49 (606)
Q Consensus 10 ~l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~~ 49 (606)
.+..+.|.|||+.|.+-||+.+|+|+||++|+.+++.+..
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~~ 64 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQIS 64 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHccC
Confidence 5678999999999999999999999999999999988754
No 34
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.43 E-value=3e-05 Score=62.89 Aligned_cols=53 Identities=23% Similarity=0.567 Sum_probs=37.0
Q ss_pred ceeccCCCCC-CCCCeeeec-CCCCCCcccccccccCCCCCCCCC-CCCCcccccccc
Q 007366 113 KVCCPCGSSL-ETESMIKCE-DPRCPVWQHMSCVIIPEKPTEGNP-PVPELFYCEICR 167 (606)
Q Consensus 113 ~~rCiC~~sl-~~~~mI~C~-~~~C~~wqH~~Cv~i~~k~~~~~p-~~P~~fyCe~Cr 167 (606)
..-++|++.. ....||+|+ . |..|||..||++....++-+. .....|+|+.|+
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~--C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEAS--CQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTT--TCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccC--ccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3445787763 456899999 6 999999999999864211110 013589999985
No 35
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.36 E-value=1.2e-05 Score=77.79 Aligned_cols=55 Identities=22% Similarity=0.589 Sum_probs=38.4
Q ss_pred eec-cCCCCCCC----CCeeeecCCCCCCcccccccccCCCCCCCCCCCC--Cccccccccccc
Q 007366 114 VCC-PCGSSLET----ESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVP--ELFYCEICRLSR 170 (606)
Q Consensus 114 ~rC-iC~~sl~~----~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P--~~fyCe~Crl~r 170 (606)
.+| +|+..-.. ..||+|+. |..|+|..|+++.+...+.+...| ..|+|+.|+...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~--C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTT--TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCC--CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 358 59877432 34999998 999999999999753111111113 389999999875
No 36
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.35 E-value=9.6e-05 Score=69.33 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=35.8
Q ss_pred HHHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccch
Q 007366 10 KLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (606)
Q Consensus 10 ~l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~ 48 (606)
.|.+|.|.|||++|.+-||+.+|+|+||++||.++|...
T Consensus 60 ~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 60 TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp CTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-
T ss_pred cHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhh
Confidence 477899999999999999999999999999999998754
No 37
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.30 E-value=0.00021 Score=61.31 Aligned_cols=70 Identities=23% Similarity=0.486 Sum_probs=57.0
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHHHHHHHhc----CCCeeeccC--CCCC-CCCCCeeecHHHHHHHHHhhc
Q 007366 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQ----RSRKWQCPI--CLRN-YSLENIIIDPYFNRITSKMRN 430 (606)
Q Consensus 359 ~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~----~~~~W~CPi--C~k~-~~~~~L~ID~y~~~IL~~l~~ 430 (606)
...|.|||++..|+-|+....|.|. |+.......-. ......||+ |.+. +...+|+.|..+.++++..+.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~--f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE--EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe--ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 4468999999999999998889998 77766655432 235789999 8877 999999999999999876643
No 38
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=97.21 E-value=0.00014 Score=62.38 Aligned_cols=55 Identities=27% Similarity=0.578 Sum_probs=42.4
Q ss_pred ceeccCCCCC--CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCccce
Q 007366 113 KVCCPCGSSL--ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWV 176 (606)
Q Consensus 113 ~~rCiC~~sl--~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~DPF~~ 176 (606)
..-++|+... ..+.||.|+. |..++|..|++++..| .+.|||+.|+.....+|.+
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~--C~~~fH~~Cl~p~~vP-------~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYIP-------EGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSS--SCCCCCHHHHTCSSCC-------SSCCCCHHHHHHTTSCC--
T ss_pred CcCCcCCCCCCCCCCCEEECCC--CCchhhcccCCCCccC-------CCceECccccCccchhhhh
Confidence 3444898654 4578999998 9999999999987432 3689999999988777664
No 39
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=97.20 E-value=0.00012 Score=60.32 Aligned_cols=51 Identities=29% Similarity=0.658 Sum_probs=39.8
Q ss_pred eeccCCCCC--CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCc
Q 007366 114 VCCPCGSSL--ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADP 173 (606)
Q Consensus 114 ~rCiC~~sl--~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~DP 173 (606)
.-.+|+... ..+.||.|+. |..|+|..|++++..| .+.|||+.|+..+.-|
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~--C~~~~H~~Cl~~~~vP-------~g~W~C~~C~~~~~~p 70 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYIP-------EGQWLCRHCLQSRARP 70 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSS--SCCEEEHHHHTCSSCC-------SSCCCCHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCEEECCC--CCCccccccCCCCcCC-------CCCcCCccCcCcCccC
Confidence 334787653 5689999998 9999999999987533 3689999999876544
No 40
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.13 E-value=0.0002 Score=54.81 Aligned_cols=45 Identities=22% Similarity=0.500 Sum_probs=35.0
Q ss_pred cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007366 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 117 iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl 168 (606)
+|+.....+.||.|+. |..|+|..|+..+- ..+| .+.|+|+.|+.
T Consensus 5 vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~p~l---~~~P--~g~W~C~~C~~ 49 (51)
T 1f62_A 5 VCRKKGEDDKLILCDE--CNKAFHLFCLRPAL---YEVP--DGEWQCPACQP 49 (51)
T ss_dssp TTCCSSCCSCCEECTT--TCCEECHHHHCTTC---CSCC--SSCCSCTTTSC
T ss_pred CCCCCCCCCCEEECCC--CChhhCcccCCCCc---CCCC--CCcEECcCccc
Confidence 5887766789999998 99999999997432 2233 36899999974
No 41
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.10 E-value=0.00015 Score=79.94 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=37.9
Q ss_pred ceeccCCCCC----CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 113 KVCCPCGSSL----ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rCiC~~sl----~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
..++.+..+- ....||+|+. |..|+|+.||+++....+ ..+.|+||.|+..
T Consensus 40 ~~~~s~kk~~~~~n~~~~mI~CD~--C~~WfH~~CVgi~~~~a~----~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 40 KPLMSKKKSHHHKKNDFQWIGCDS--CQTWYHFLCSGLEQFEYY----LYEKFFCPKCVPH 94 (528)
T ss_dssp --CCSCCCTTTTTTSTTSEEECTT--TCCEEEGGGTTCCGGGTT----TEEECCCTTTHHH
T ss_pred hccccccccccCCCcCCCEEECCC--CCcCCCCcCCCCChhHhc----CCCeEECcCCcCC
Confidence 4555555442 3568999998 999999999999875422 2478999999975
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.10 E-value=0.00033 Score=59.09 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=54.5
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 428 (606)
+.-.+.|||++..|+-|+... |.|. |+.......-.. ...||+|++.+...+|+.+..+.++++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLP-SGTV--MDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TSCE--EEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECC-CCCE--ECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 455789999999999999987 9997 887776555432 36899999999999999999998887654
No 43
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.00033 Score=60.39 Aligned_cols=53 Identities=23% Similarity=0.555 Sum_probs=40.2
Q ss_pred CCCceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 110 SDTKVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 110 ~~~~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
......| +|+.....+.||.|+. |..|+|..|+..+- ..+| .+.|+|+.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~--C~~~~H~~Cl~Ppl---~~~P--~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDG--CDDNYHIFCLLPPL---PEIP--RGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTT--TCCEECSSSSSSCC---SSCC--SSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCC--CCchhccccCCCCc---ccCC--CCCcCCccCcCc
Confidence 3344567 7998766678999998 99999999998532 2233 368999999875
No 44
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=97.04 E-value=0.00041 Score=55.30 Aligned_cols=54 Identities=24% Similarity=0.551 Sum_probs=40.3
Q ss_pred cCCCCCceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 107 YIQSDTKVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 107 ~~~~~~~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
+...+...+| +|+. .+.||.|+. |..|+|..|+..+-. .+| .+.|+|+.|+...
T Consensus 5 ~~~~~~~~~C~vC~~---~g~ll~CD~--C~~~fH~~Cl~p~l~---~~p--~g~W~C~~C~~~g 59 (61)
T 2l5u_A 5 SYETDHQDYCEVCQQ---GGEIILCDT--CPRAYHMVCLDPDME---KAP--EGKWSCPHCEKEG 59 (61)
T ss_dssp CCSSCCCSSCTTTSC---CSSEEECSS--SSCEEEHHHHCTTCC---SCC--CSSCCCTTGGGGS
T ss_pred cccCCCCCCCccCCC---CCcEEECCC--CChhhhhhccCCCCC---CCC--CCceECccccccc
Confidence 3344556788 4986 469999998 999999999997532 222 3689999998653
No 45
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.93 E-value=0.00064 Score=54.95 Aligned_cols=48 Identities=25% Similarity=0.636 Sum_probs=36.6
Q ss_pred ceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 113 ~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
..+| +|+.. +.||.|+. |..|+|..|++.+- ..+| .+.|+|+.|...+
T Consensus 8 ~~~C~vC~~~---g~ll~CD~--C~~~fH~~Cl~ppl---~~~P--~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 8 EDECAVCRDG---GELICCDG--CPRAFHLACLSPPL---REIP--SGTWRCSSCLQAT 56 (66)
T ss_dssp CCSBSSSSCC---SSCEECSS--CCCEECTTTSSSCC---SSCC--SSCCCCHHHHHTC
T ss_pred CCCCccCCCC---CCEEEcCC--CChhhcccccCCCc---CcCC--CCCeECccccCcc
Confidence 4567 58854 68999998 99999999999532 2233 3689999998764
No 46
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=96.89 E-value=0.00075 Score=59.88 Aligned_cols=48 Identities=17% Similarity=0.436 Sum_probs=37.1
Q ss_pred CCceeccCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007366 111 DTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 111 ~~~~rCiC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Cr 167 (606)
+...+|.+-+ .+|+||.|+...|..|+|..|+++...| .+.|||+.|+
T Consensus 13 ~~~~~C~~C~--~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P-------~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCG--DGGELVMCDKKDCPKAYHLLCLNLTQPP-------YGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTC--CCSEEEECCSTTCCCEECTGGGTCSSCC-------SSCCCCGGGB
T ss_pred CCCCCCCcCC--CCCcEeEECCCCCCcccccccCcCCcCC-------CCCEECCCCC
Confidence 3456786433 3689999995559999999999976554 4789999875
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.85 E-value=0.0016 Score=56.51 Aligned_cols=66 Identities=8% Similarity=0.017 Sum_probs=54.5
Q ss_pred ceeeecCCCCcccccccccCCCCC-ccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCV-HMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~-HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 428 (606)
+.-.+.|||++..|+-|+.. .|- |. ||.......-.. ...||+|++++...+|+.+..+.++++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~-~cG~ht--f~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVL-PSSRVT--VDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEEC-TTTCCE--EEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred CcHhcCCcCccccccCCeEC-CCCCeE--ECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 45568999999999999996 466 97 887777665443 35899999999999999999999887754
No 48
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.00091 Score=52.26 Aligned_cols=46 Identities=26% Similarity=0.676 Sum_probs=34.7
Q ss_pred ceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007366 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 113 ~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl 168 (606)
..+| +|+.. +.||.|+. |..|+|..|+..+-+ .+| .+.|+|+.|+-
T Consensus 9 ~~~C~vC~~~---g~ll~Cd~--C~~~~H~~Cl~ppl~---~~p--~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---GQLLMCDT--CSRVYHLDCLDPPLK---TIP--KGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---SCCEECSS--SSCEECSSSSSSCCC---SCC--CSSCCCHHHHC
T ss_pred CCCCccCCCC---CeEEEcCC--CCcceECccCCCCcC---CCC--CCceEChhhhC
Confidence 3457 58864 68999998 999999999995422 223 36899999963
No 49
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.72 E-value=0.00051 Score=54.66 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=43.6
Q ss_pred eeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007366 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 360 vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
+++.||||+..|+-|+-...|-|. ||.++....-.+.+ .||++++++..++|+
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~--yer~~I~~~l~~~~--~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTI--FEKSLLEQYVKDTG--NDPITNEPLSIEEIV 54 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEE--EEHHHHHHHHHHHS--BCTTTCCBCCGGGCE
T ss_pred CeEEecCCCCCCCCCEEeCCCCcE--EcHHHHHHHHHhCC--CCcCCcCCCChhhcE
Confidence 478999999999999998788887 99988877654433 499999999988886
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.58 E-value=0.0021 Score=55.88 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=55.7
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 428 (606)
+.-.+.|||++..|+-|+... |-|. ||.......-.. ...||+|++++...+|+.+..+.++++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLP-SGTI--MDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEET-TTEE--EEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred CcHhhCCcCccCcccCCeECC-CCCE--EchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 355689999999999999987 9997 888777665443 46899999999999999999999887754
No 51
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.53 E-value=0.0017 Score=52.63 Aligned_cols=48 Identities=21% Similarity=0.551 Sum_probs=35.7
Q ss_pred ceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 113 ~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
..+| +|+. .+.||.|+. |..++|..|+..+-. .+| .+.|||+.|+...
T Consensus 12 ~~~C~vC~~---~~~ll~Cd~--C~~~~H~~Cl~P~l~---~~P--~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGD---GTDVLRCTH--CAAAFHWRCHFPAGT---SRP--GTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSC---CTTCEECSS--SCCEECHHHHCTTTC---CCC--SSSCCCTTTTTCC
T ss_pred CCCcCCCCC---CCeEEECCC--CCCceecccCCCccC---cCC--CCCEECccccCCC
Confidence 3456 6874 468999999 999999999975422 223 3679999998653
No 52
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=96.45 E-value=0.0017 Score=53.22 Aligned_cols=46 Identities=28% Similarity=0.753 Sum_probs=35.8
Q ss_pred cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCC-cccccccccc
Q 007366 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPE-LFYCEICRLS 169 (606)
Q Consensus 117 iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~-~fyCe~Crl~ 169 (606)
+|+.....+.||.|+. |..++|..|++.+ +..+| .+ .|+|+.|+..
T Consensus 23 ~C~~~~~~~~ll~CD~--C~~~yH~~Cl~Pp---l~~~P--~g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPP---LSSVP--SEDEWYCPECRND 69 (70)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEEGGGSSSC---CSSCC--SSSCCCCTTTSCC
T ss_pred CCCCcCCCCCEEEcCC--CCCceecccCCCC---cCCCC--CCCCcCCcCccCc
Confidence 5777767889999998 9999999999843 22333 24 8999999853
No 53
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=51.36 Aligned_cols=46 Identities=24% Similarity=0.654 Sum_probs=34.8
Q ss_pred eec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 114 ~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
.+| +|+.. +.||.|+. |..|+|..|++.+- ..+| .+.|+|+.|+..
T Consensus 6 ~~C~vC~~~---g~ll~Cd~--C~~~fH~~Cl~ppl---~~~p--~g~W~C~~C~~~ 52 (60)
T 2puy_A 6 DFCSVCRKS---GQLLMCDT--CSRVYHLDCLDPPL---KTIP--KGMWICPRCQDQ 52 (60)
T ss_dssp SSCTTTCCC---SSCEECSS--SSCEECGGGSSSCC---SSCC--CSCCCCHHHHHH
T ss_pred CCCcCCCCC---CcEEEcCC--CCcCEECCcCCCCc---CCCC--CCceEChhccCh
Confidence 456 58764 68999998 99999999999532 2233 368999999754
No 54
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=96.35 E-value=0.0028 Score=50.80 Aligned_cols=53 Identities=19% Similarity=0.416 Sum_probs=37.4
Q ss_pred eec-cCCCCC--CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 114 VCC-PCGSSL--ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 114 ~rC-iC~~sl--~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
..| +|+... ..+.||.|+. |..++|..|++.+-.. +.++ -.+.|+|+.|+...
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~~p~l~~-~~~~-p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDK--CGQGYHQLCHTPHIDS-SVID-SDEKWLCRQCVFAT 62 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSS--SCCEEETTTSSSCCCH-HHHH-SSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCEEECCC--CChHHHhhhCCCcccc-cccC-CCCCEECCCCcCcc
Confidence 345 788663 3589999999 9999999999975321 0010 13679999998654
No 55
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.34 E-value=0.0025 Score=51.89 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=52.0
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhh
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMR 429 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~ 429 (606)
.|.|||.+..|+-|+.. .|.|. |...-+...-. .....||+|++.+...+|..+..+.++++...
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~--fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQT--YERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEE--EEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCCCCccccccCCEEc-CCCCe--ecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 57899999999999986 69998 55555554433 24678999999999999999988888877553
No 56
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.28 E-value=0.0065 Score=50.70 Aligned_cols=45 Identities=31% Similarity=0.798 Sum_probs=35.3
Q ss_pred cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCC-ccccccccc
Q 007366 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPE-LFYCEICRL 168 (606)
Q Consensus 117 iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~-~fyCe~Crl 168 (606)
+|+.....+.||.|+. |..++|..|+..+ +..+| .+ .|+|+.|+.
T Consensus 31 vC~~~~~~~~ll~CD~--C~~~yH~~Cl~Pp---l~~~P--~g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHEPNMQLLCDE--CNVAYHIYCLNPP---LDKVP--EEEYWYCPSCKT 76 (77)
T ss_dssp SSCCCCCSTTEEECSS--SCCEEETTSSSSC---CSSCC--CSSCCCCTTTCC
T ss_pred CcCCcCCCCCEEEcCC--CCccccccccCCC---ccCCC--CCCCcCCcCccC
Confidence 5887767889999998 9999999999843 22333 24 799999964
No 57
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.28 E-value=0.0039 Score=52.32 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=52.7
Q ss_pred eecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCC-CCCCeeecHHHHHHHHHhhc
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNY-SLENIIIDPYFNRITSKMRN 430 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~-~~~~L~ID~y~~~IL~~l~~ 430 (606)
.|.|||.+..|.-|+....|.|.-|..- ..|+. ......||+|.+.+ ...+|..+..+.++++.++.
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHH---HCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH---hcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 5789999999999998756999966642 33443 33457999999997 68899999999999887643
No 58
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.22 E-value=0.0037 Score=60.18 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=54.9
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007366 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 359 ~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 428 (606)
.-.+.|||++..|+-|+.. .|-|. ||-......-...+. .||+|+.++...+|+.+..+..+++..
T Consensus 104 p~~f~CPI~~elm~DPV~~-~~Ght--fer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT-PSGIT--YDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTSCE--EEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCeEC-CCCCE--ECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 4568999999999999998 79996 888877665443333 699999999999999999999887754
No 59
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.78 E-value=0.00046 Score=61.58 Aligned_cols=42 Identities=24% Similarity=0.560 Sum_probs=29.2
Q ss_pred CeeeecCCCCCCcccccccccCCCCCCCCCCC--CCcccccccccc
Q 007366 126 SMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPV--PELFYCEICRLS 169 (606)
Q Consensus 126 ~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~--P~~fyCe~Crl~ 169 (606)
+||+|+. |..|+|..|++++....+-++.+ ...|.|+.|...
T Consensus 1 ~mi~c~~--c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSC--CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred Ccccccc--CCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 5999999 99999999999874211111111 236899999654
No 60
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.61 E-value=0.016 Score=49.38 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=54.0
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhhc
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMRN 430 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~ 430 (606)
+.-.+.|||-...+..|+....|.|.-|.+- ..|+. ..-.||+|.+.+...+|..+..+.++++.++.
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-----YKTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-----CCCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 3446889999999999998889999866542 23332 23589999999999999999999999887654
No 61
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=95.57 E-value=0.013 Score=46.63 Aligned_cols=47 Identities=23% Similarity=0.619 Sum_probs=35.6
Q ss_pred ceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
..+| +|+. .+.||.|+. |..++|..|+..+- ..+| .+.|+|+.|+..
T Consensus 9 ~~~C~vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl---~~~p--~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKD---GGELLCCDT--CPSSYHIHCLNPPL---PEIP--NGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCC---CSSCBCCSS--SCCCBCSSSSSSCC---SSCC--SSCCCCTTTTTT
T ss_pred CCcCCCCCC---CCCEEEcCC--CCHHHcccccCCCc---CcCC--CCccCChhhcCc
Confidence 3456 5875 468999999 99999999999542 2233 368999999865
No 62
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.48 E-value=0.0095 Score=55.57 Aligned_cols=71 Identities=28% Similarity=0.476 Sum_probs=54.8
Q ss_pred ecceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCC-CCCCeeecHHHHHHHHHhhc
Q 007366 356 DSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNY-SLENIIIDPYFNRITSKMRN 430 (606)
Q Consensus 356 ~~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~-~~~~L~ID~y~~~IL~~l~~ 430 (606)
..+.-.+.|||-...+..|+....|.|.-|.+- ..|+. .....||+|.+.+ ....|..|..+..++..+..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----SGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----TTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----hCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 344557899999999999999889999977652 33443 2357899999988 46789999999999887743
No 63
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=95.43 E-value=0.0086 Score=50.01 Aligned_cols=46 Identities=26% Similarity=0.739 Sum_probs=33.5
Q ss_pred cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007366 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 117 iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl 168 (606)
+|+.....+.||.|+. |..++|..|+..+ +..+|. ...|+|+.|+-
T Consensus 31 vC~~~~d~~~ll~CD~--C~~~yH~~Cl~Pp---L~~~P~-g~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPP---LSSVPS-EDEWYCPECRN 76 (77)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEETTTSSSC---CSSCCS-SSCCCCTTTC-
T ss_pred ccCCCCCCcceeEeCC--CCCccCcccCCCc---ccCCCC-CCceECcCccc
Confidence 4666666688999998 9999999999954 223332 22399999974
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.33 E-value=0.01 Score=58.87 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=50.0
Q ss_pred eeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007366 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 360 vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 428 (606)
-.+.|||+...|+-|+... |-|. |+.......-...+ ..||+|+.++...+|+.+.-+.++++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~-~gh~--f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITP-SGIT--YDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp STTBCTTTCSBCSSEEECS-SCCE--EETTHHHHHHHHTC-SSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred cccCCcCcCCHhcCCeECC-CCCE--ECHHHHHHHHHHCC-CCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 3578999999999999866 9997 55544443322222 1299999999999999999999987754
No 65
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=95.21 E-value=0.011 Score=56.65 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=35.8
Q ss_pred CceeccCCCCC-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 112 TKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 112 ~~~rCiC~~sl-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
...+|.||..- -+-.|++|.. |..|+|..|+.....++-+. ..--.|.|..|....
T Consensus 4 ~~~yCYCG~~~~~~~~mLqC~~--C~qWFH~~Cl~~~~~~~lp~-~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 4 QAGSVDEENGRQLGEVELQCGI--CTKWFTADTFGIDTSSCLPF-MTNYSFHCNVCHHSG 60 (177)
T ss_dssp -------CTTCCTTSCEEECTT--TCCEEEGGGGTCCCTTCCTT-CCSEEEECTTTSTTS
T ss_pred eeeEEEcCCCCCCCceeEeecc--ccceecHHHhcccccCcccc-ceeEEEEccccCCCC
Confidence 35799999863 3678999999 99999999999776543221 224457899997643
No 66
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=95.16 E-value=0.011 Score=52.67 Aligned_cols=46 Identities=28% Similarity=0.671 Sum_probs=36.4
Q ss_pred cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 117 iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
+|+.....+.|+.|+. |..++|..|+..+ +..+| .+.|+|+.|+..
T Consensus 63 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~pp---l~~~P--~g~W~C~~C~~~ 108 (114)
T 2kwj_A 63 LCGTSENDDQLLFCDD--CDRGYHMYCLNPP---VAEPP--EGSWSCHLCWEL 108 (114)
T ss_dssp TTTCCTTTTTEEECSS--SCCEEETTTSSSC---CSSCC--SSCCCCHHHHHH
T ss_pred cccccCCCCceEEcCC--CCccccccccCCC---ccCCC--CCCeECccccch
Confidence 6787766789999998 9999999999943 23333 358999999754
No 67
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=95.14 E-value=0.022 Score=48.76 Aligned_cols=47 Identities=21% Similarity=0.685 Sum_probs=35.2
Q ss_pred ceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
...| +|+.. +.++-|+. |...+|..|+..+ +..+| .+.|+|+.|+..
T Consensus 25 ~~~C~vC~~~---g~LL~CD~--C~~~fH~~Cl~Pp---L~~~P--~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP---GDLVMCNQ--CEFCFHLDCHLPA---LQDVP--GEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS---SCCEECTT--SSCEECTTSSSTT---CCCCC--SSSCCCCSCCCC
T ss_pred CCcCcCcCCC---CCEEECCC--CCCceecccCCCC---CCCCc--CCCcCCccccCC
Confidence 4566 57754 58999998 9999999999643 22333 368999999865
No 68
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.91 E-value=0.017 Score=49.63 Aligned_cols=70 Identities=20% Similarity=0.464 Sum_probs=55.9
Q ss_pred cceeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhhc
Q 007366 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMRN 430 (606)
Q Consensus 357 ~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~ 430 (606)
.+.-.+.|||-+..+..|+.-..|.|.-|++ +..|+... ...||+|.+.+...+|+...++.+|.+.++.
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ----RAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC----cCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 3455688999999999999878999997765 34455433 2689999999999999999998888776654
No 69
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=94.77 E-value=0.016 Score=57.71 Aligned_cols=46 Identities=28% Similarity=0.753 Sum_probs=31.3
Q ss_pred cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCC-cccccccccc
Q 007366 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPE-LFYCEICRLS 169 (606)
Q Consensus 117 iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~-~fyCe~Crl~ 169 (606)
+|+.....+.|+.|+. |..++|..|+..+ +..+| .+ .|+|+.|+..
T Consensus 179 vC~~~~~~~~lL~CD~--C~~~yH~~CL~PP---L~~vP--~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 179 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPP---LSSVP--SEDEWYCPECRND 225 (226)
T ss_dssp SSCCCCC--CCEECSS--SCCEECSCC--CC---CCSCC--SSSCCCCGGGC--
T ss_pred CCCCCCCCCCeEEcCC--CCcceeCccCCCC---cccCC--CCCCCCCcCCcCc
Confidence 5777666789999999 9999999999843 33333 24 7999999753
No 70
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.65 E-value=0.022 Score=50.04 Aligned_cols=51 Identities=25% Similarity=0.574 Sum_probs=38.6
Q ss_pred ec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCC
Q 007366 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRAD 172 (606)
Q Consensus 115 rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~D 172 (606)
.| +|+.......|+.|+. |..++|..|+..+ +..+|. +.|+|+.|+....-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~pp---l~~~P~--g~W~C~~C~~c~~g 107 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDT--CDKGYHTFCLQPV---MKSVPT--NGWKCKNCRICISG 107 (111)
T ss_dssp CCTTTCCCSCCTTEEECSS--SCCEEEGGGSSSC---CSSCCS--SCCCCHHHHCCSCS
T ss_pred cccccCccCCCCCeeECCC--CCcHHhHHhcCCc---cccCCC--CCcCCcCCcCcCCC
Confidence 45 4777765667999998 9999999999854 233343 68999999877543
No 71
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.65 E-value=0.031 Score=49.55 Aligned_cols=66 Identities=14% Similarity=0.310 Sum_probs=52.5
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCC-CCeeecHHHHHHHHHh
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSL-ENIIIDPYFNRITSKM 428 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~-~~L~ID~y~~~IL~~l 428 (606)
+.-.+.|||-...+..|+.. .|.|.-|.+- ..|+. .....||+|.+.+.. .+|..+..+..+++.+
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFR----AQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred CccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHh----HCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 34468899999999999886 8999977653 34443 345699999999987 8899999999987754
No 72
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.56 E-value=0.035 Score=48.01 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=52.3
Q ss_pred cceeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCC----CeeecHHHHHHHHHh
Q 007366 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLE----NIIIDPYFNRITSKM 428 (606)
Q Consensus 357 ~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~----~L~ID~y~~~IL~~l 428 (606)
.+.-.+.|||-...+..|+....|.|.-|.. -+...... .-.||+|.+.+... +|..+..+.++++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~--Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKT--CIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHH--HHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHH--HHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 3455688999999999999988999986654 22222222 26899999998876 899999999988765
No 73
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.55 E-value=0.021 Score=50.25 Aligned_cols=65 Identities=15% Similarity=0.329 Sum_probs=51.7
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHH-HHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhhc
Q 007366 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMRN 430 (606)
Q Consensus 359 ~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~-~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~ 430 (606)
.-.|.|||-+..+..|+....|.|.-|..-- .++. ..||+|.+.+...+|..+..+..++..++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence 3458899999999999998899998765422 2221 579999999999999999999988876543
No 74
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=94.13 E-value=0.046 Score=50.68 Aligned_cols=67 Identities=15% Similarity=0.338 Sum_probs=53.0
Q ss_pred ceeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCC-CeeecHHHHHHHHHhh
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLE-NIIIDPYFNRITSKMR 429 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~-~L~ID~y~~~IL~~l~ 429 (606)
+.-.+.|||-...+..|+. ..|.|.-|.. +..++. .....||+|...+... .|..+..+.++++.+.
T Consensus 75 l~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFK----AQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred CccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHH----hCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 3445889999999999998 5999987754 333443 2456899999999988 8999999999987653
No 75
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.95 E-value=0.04 Score=48.57 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=53.4
Q ss_pred ecceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhh
Q 007366 356 DSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMR 429 (606)
Q Consensus 356 ~~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~ 429 (606)
..+.-.+.|||-+..+..|+.. .|.|.-|.+- ..|+.... ..||+|.+.+...++..+.++.+++..++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC----CCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 3445568999999999999885 7999977653 34444322 38999999999999999999998876553
No 76
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=93.78 E-value=0.039 Score=52.65 Aligned_cols=46 Identities=28% Similarity=0.682 Sum_probs=34.8
Q ss_pred ec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 115 rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
.| +|+. .|.++-|+. |..++|..|+..+- ..+| .+.|+|+.|+...
T Consensus 6 ~C~~C~~---~g~ll~Cd~--C~~~~H~~C~~p~l---~~~p--~~~W~C~~C~~~~ 52 (184)
T 3o36_A 6 WCAVCQN---GGELLCCEK--CPKVFHLSCHVPTL---TNFP--SGEWICTFCRDLS 52 (184)
T ss_dssp SCTTTCC---CSSCEECSS--SSCEECTTTSSSCC---SSCC--SSCCCCTTTSCSS
T ss_pred ccccCCC---CCeeeecCC--CCcccCccccCCCC---CCCC--CCCEECccccCcc
Confidence 45 5874 468999999 99999999997542 2233 3679999999764
No 77
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.58 E-value=0.041 Score=47.41 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=42.1
Q ss_pred eecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHH
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPY 420 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y 420 (606)
.+.|||-+..+..|+. ..|.|.-|.+- ..|+. .......||+|.+.+...+|..+..
T Consensus 21 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~--~~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLN--QKKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHH--SSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHH--hCCCCCCCcCCCCcCCHhhcCccHH
Confidence 5689999999999988 48999977653 33443 2234579999999998877765533
No 78
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.54 E-value=0.011 Score=48.16 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=45.7
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHH-HHHHHhc-CCCeeeccCCCCCCCCCCeeecHHHH
Q 007366 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQ-RSRKWQCPICLRNYSLENIIIDPYFN 422 (606)
Q Consensus 359 ~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~-~fL~~n~-~~~~W~CPiC~k~~~~~~L~ID~y~~ 422 (606)
.-.+.|||-+..+..|+. ..|.|.-|.+-. .|+.... ......||+|.+.+...+|..+..+.
T Consensus 17 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred ccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 345789999999999986 469999665532 3333221 23578999999999998888775443
No 79
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.27 E-value=0.099 Score=40.96 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=39.6
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCe
Q 007366 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENI 415 (606)
Q Consensus 359 ~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L 415 (606)
.-.+.||+-...++.|+. ..|.|.-|.+ -+..... .....||+|.+.+..++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~--Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ-TECGHRFCES--CMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC-CSSSCCCCHH--HHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE-CCCCCHHHHH--HHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 446889999999999999 6999996654 2222221 345689999999988776
No 80
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=93.26 E-value=0.059 Score=47.62 Aligned_cols=45 Identities=29% Similarity=0.718 Sum_probs=33.2
Q ss_pred cCCCC-CCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007366 117 PCGSS-LETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 117 iC~~s-l~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl 168 (606)
+|+.. ...+.|+.|+. |..++|..|+..+ +..+| .+.|+|+.|+.
T Consensus 66 vC~~~~~~~~~ll~Cd~--C~~~yH~~Cl~p~---l~~~P--~~~W~C~~C~~ 111 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDS--CDRGFHMECCDPP---LTRMP--KGMWICQICRP 111 (112)
T ss_dssp TTCCCCCTTCCCEECTT--TCCEECGGGCSSC---CSSCC--SSCCCCTTTSC
T ss_pred cccCcCCCccceEEcCC--CCCeeecccCCCC---CCCCC--CCCeECCCCCC
Confidence 46654 33468999999 9999999999643 22333 35799999985
No 81
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.75 E-value=0.068 Score=45.47 Aligned_cols=54 Identities=20% Similarity=0.578 Sum_probs=37.8
Q ss_pred ceec-cCCCCCC--CCCeeeecCCCCCCcccccccccCCCCCC-CCCCCCCccccccccccc
Q 007366 113 KVCC-PCGSSLE--TESMIKCEDPRCPVWQHMSCVIIPEKPTE-GNPPVPELFYCEICRLSR 170 (606)
Q Consensus 113 ~~rC-iC~~sl~--~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~-~~p~~P~~fyCe~Crl~r 170 (606)
...| +|+.... .+.||.|+. |...+|..|++.+-.... .+| .+.|+|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~~~~~~p--~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQE--CHNLYHQDCHKPQVTDKEVNDP--RLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSS--SCCEEETTTSSSCCCHHHHHCT--TCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCC--CCCeEcCccCCCcccccccCCC--CCCeeCccccchh
Confidence 3445 6887643 478999999 999999999986532000 011 4689999998764
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=92.73 E-value=0.051 Score=52.86 Aligned_cols=47 Identities=26% Similarity=0.624 Sum_probs=35.4
Q ss_pred eec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007366 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 114 ~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r 170 (606)
..| +|+.. |.|+-|+. |..++|..|+..+- ..+| .+.|+|+.|+...
T Consensus 8 ~~C~~C~~~---g~ll~Cd~--C~~~~H~~Cl~p~l---~~~p--~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNG---GDLLCCEK--CPKVFHLTCHVPTL---LSFP--SGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCC---EEEEECSS--SSCEECTTTSSSCC---SSCC--SSCCCCTTTSCSS
T ss_pred CCCCCCCCC---CceEEcCC--CCCccCCccCCCCC---CCCC--CCCEEeCceeCcc
Confidence 346 68744 57999999 99999999997532 2233 3679999999764
No 83
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=92.47 E-value=0.13 Score=47.14 Aligned_cols=46 Identities=33% Similarity=0.449 Sum_probs=42.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccchhh
Q 007366 5 ASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQV 50 (606)
Q Consensus 5 ~~~~~~l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~~~ 50 (606)
...+++|..+-..+|++++.-|+|+.+|.|-||++||+..|.+...
T Consensus 66 ~k~~e~l~K~~~~~L~~~c~iL~l~~~g~keelv~ril~FL~~P~~ 111 (131)
T 2jx3_A 66 KKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPKP 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSCSCHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHccCHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhCccc
Confidence 4578899999999999999999999999999999999999998664
No 84
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.29 E-value=0.09 Score=42.02 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=41.9
Q ss_pred eeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007366 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 359 ~vSL~CPls~~ri~~P~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
.-.+.|||-+..+..|+.-..|.|.-|.+ +..|+.. .-.||+|.+.+...++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCcccCccccc
Confidence 34688999999999999988999997764 4455543 35899999999877654
No 85
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.19 E-value=0.14 Score=40.62 Aligned_cols=56 Identities=16% Similarity=0.449 Sum_probs=41.7
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccHHHHHHHhc-CCCeeeccCCCCCCCCCCee
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQ-RSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~-~~~~W~CPiC~k~~~~~~L~ 416 (606)
+.-.+.|||-+..+..|+.. .|.|.-|.+ -+..... ....-.||+|.+.+..++++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~--Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLK--CITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC-TTCCEEEHH--HHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEc-CCCChhhHH--HHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 44568899999999999887 999995544 3333332 24567899999999887763
No 86
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.16 E-value=0.3 Score=39.71 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=40.8
Q ss_pred eeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHH
Q 007366 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFN 422 (606)
Q Consensus 360 vSL~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~ 422 (606)
..+.|||-+..+..|+. ..|.|.-|++- ..|+.. ...||+|.+.+. ..+.....+.
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~-~~~~~~~~l~ 70 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA-----TPRCYICDQPTG-GIFNPAKELM 70 (81)
T ss_dssp CCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH-----CSBCSSSCCBCC-SCCEECHHHH
T ss_pred CCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC-----CCcCCCcCcccc-ccCCcHHHHH
Confidence 35789999999999987 68999966543 233332 458999999986 6666664443
No 87
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=91.31 E-value=0.09 Score=42.38 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=38.6
Q ss_pred eeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCC
Q 007366 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLE 413 (606)
Q Consensus 359 ~vSL~CPls~~ri~~P~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~ 413 (606)
.-.+.|||-...+..|+....|.|.-|.. +..|+.. .....||+|.+.+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---SDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---SSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---cCCCcCCCCCCcCCCc
Confidence 44689999999999999966699997776 3445543 2356899999875433
No 88
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=91.26 E-value=0.14 Score=47.67 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=52.9
Q ss_pred ecceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007366 356 DSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 356 ~~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 428 (606)
+.+.-.|.|||-...+..|+. ..|.|.-|.+- ..++.... ..||+|.+.+...+|..|.++.+++..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCC----CCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 445667899999999999988 58999976652 33443221 2999999999999999999998886654
No 89
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.73 E-value=0.31 Score=39.37 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=45.8
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccHH-HHHHHh-cCCCeeeccCCCCCCCCCCeeecHHH
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELN-QRSRKWQCPICLRNYSLENIIIDPYF 421 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~-~fL~~n-~~~~~W~CPiC~k~~~~~~L~ID~y~ 421 (606)
+.-.+.|||-+..+..|+.. .|.|.-|.+-- .|+... .......||+|.+.+...+|..+..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHV 80 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCC
T ss_pred ccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHH
Confidence 34468999999999999875 79998776633 344331 23447899999999998887765443
No 90
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=90.73 E-value=0.095 Score=46.22 Aligned_cols=42 Identities=19% Similarity=0.460 Sum_probs=31.1
Q ss_pred CCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 125 ESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 125 ~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
..|++|+. |..|+|..|++++...+ -....+..|.|+.|+..
T Consensus 73 ~~m~~C~~--C~~~~H~~C~~~~~~~~-~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECCI--CNEIVHPGCLQMDGEGL-LNEELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEETT--TCCEECGGGCCSCCCCE-ECSSSSSEEECTTTC--
T ss_pred cceEEeee--cCCeEECCCCCCCcccc-ccccCCCCeECCCCcCC
Confidence 45999999 99999999999864321 11345678999999875
No 91
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=90.66 E-value=0.14 Score=49.22 Aligned_cols=45 Identities=22% Similarity=0.704 Sum_probs=33.6
Q ss_pred ec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 115 rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
+| +|+. .|.++.|+. |...+|..|+..+-+ .+| .+.|+|+.|+..
T Consensus 4 ~C~~C~~---~g~ll~Cd~--C~~~~H~~Cl~p~l~---~~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 4 ICRVCQK---PGDLVMCNQ--CEFCFHLDCHLPALQ---DVP--GEEWSCSLCHVL 49 (189)
T ss_dssp CBTTTCC---CSSCCCCTT--TCCBCCSTTSTTCCS---SCC--CTTCCTTTTSCS
T ss_pred cCccCCC---CCceeECCC--CCchhccccCCCCcc---cCC--CCCCCCcCccCC
Confidence 45 4764 468999999 999999999964322 222 468999999876
No 92
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=90.38 E-value=0.14 Score=44.58 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=47.8
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCC-------CCeeecHHHHHHHHHh
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSL-------ENIIIDPYFNRITSKM 428 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~-------~~L~ID~y~~~IL~~l 428 (606)
.+.|||-+..+..|+.. .|.|.-|.+- +.... ......||+|.+.+.. .++.+|..+.++++..
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~C--i~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKPC--FQSTV-EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHHH--HCCCC-CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHHH--HHHHH-hHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 57899999999999987 8999866433 22211 2235789999998864 7888999888887643
No 93
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=90.00 E-value=0.018 Score=46.51 Aligned_cols=57 Identities=23% Similarity=0.462 Sum_probs=40.7
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcC-----CCeeeccCCCCCCCCCCeeecHH
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQR-----SRKWQCPICLRNYSLENIIIDPY 420 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~-----~~~W~CPiC~k~~~~~~L~ID~y 420 (606)
.+.|||-+..+..|+.. .|.|.-|.+ =+...... .....||+|.+.+...+|..+..
T Consensus 12 ~~~C~IC~~~~~~p~~l-~CgH~fC~~--Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 12 EVTCPICLELLTEPLSL-DCGHSLCRA--CITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCEETTTTEECSSCCCC-SSSCCCCHH--HHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred CCCCcCCCcccCCeeEC-CCCCHHHHH--HHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 47799999999999884 899986543 32222222 23679999999998877765543
No 94
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=89.04 E-value=0.3 Score=42.48 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=48.7
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCee-ecHHHHHHHHHh
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENII-IDPYFNRITSKM 428 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~-ID~y~~~IL~~l 428 (606)
+.-.+.|||-...+..|+. ..|.|.-|..- ..|+... .-.||+|.+.+...+|. .+..+.++++.+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVM----GSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred ccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC----cCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 3446889999999999998 58999976552 3344331 34799999999988875 566777766554
No 95
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=88.42 E-value=0.1 Score=47.83 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=52.0
Q ss_pred ceEeecceeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCC---------CCCeeecHHH
Q 007366 352 EVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYS---------LENIIIDPYF 421 (606)
Q Consensus 352 eIv~~~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~---------~~~L~ID~y~ 421 (606)
+++.+.+.-.|.|||-...+.-|+. ..|.|.-|.. +..|+ +.....||+|.+.+. ..++..|.++
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~----~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASIL----SSGPQNCAACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHG----GGSCEECHHHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHH----hcCCCCCCCCCCcccccccccccchhhhcccHHH
Confidence 4444556677899999999999988 4999997655 22333 234468999988654 3467789999
Q ss_pred HHHHHHh
Q 007366 422 NRITSKM 428 (606)
Q Consensus 422 ~~IL~~l 428 (606)
.+.+..|
T Consensus 97 ~~~i~~L 103 (141)
T 3knv_A 97 RREVESL 103 (141)
T ss_dssp HHHHHTS
T ss_pred HHHHccc
Confidence 8887654
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.99 E-value=0.54 Score=41.05 Aligned_cols=47 Identities=23% Similarity=0.481 Sum_probs=36.0
Q ss_pred eec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007366 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 114 ~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Cr 167 (606)
..| +|+.......||.|+. |...+|..|+.++..++ ....|+|+.|+
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~--C~~~~H~~Cl~~~~~~~-----~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTT--CGQHYHGMCLDIAVTPL-----KRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSS--SCCEECTTTTTCCCCTT-----TSTTCCCTTTC
T ss_pred CCCcCCCCCCCCcCCeECCC--CCCCcChHHhCCccccc-----cccCccCCcCC
Confidence 345 6887765567899998 99999999999875431 13679999886
No 97
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=87.98 E-value=0.24 Score=44.76 Aligned_cols=60 Identities=25% Similarity=0.466 Sum_probs=40.8
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCC--CCeeecHHHHHHH
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSL--ENIIIDPYFNRIT 425 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~--~~L~ID~y~~~IL 425 (606)
.|.|||-...+..|+- ..|.|.-|.+-- ..... ..-.||+|.+.+.. .++.+|..+..++
T Consensus 53 ~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci--~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT-LNCAHSFCSYCI--NEWMK--RKIECPICRKDIKSKTYSLVLDNCINKMV 114 (138)
T ss_dssp HSBCTTTCSBCSSEEE-ETTSCEEEHHHH--HHHTT--TCSBCTTTCCBCCCEEECHHHHHHHHHHH
T ss_pred cCCCcccCcccCCceE-CCCCCCccHHHH--HHHHH--cCCcCCCCCCcCCCCCCccchhHHHHHHH
Confidence 3679999999999986 579998666542 22222 23569999988753 3556666665553
No 98
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.54 E-value=0.57 Score=36.36 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=37.5
Q ss_pred ecCCCCcc-ccccccc---CCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeee
Q 007366 362 LRCPMSGS-RIKVAGR---FKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIII 417 (606)
Q Consensus 362 L~CPls~~-ri~~P~R---g~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~I 417 (606)
+.||+-+. .+.-|.+ ...|.|.-|..= ..++. .....||+|.+.+...+++-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----RGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----TTSSSCTTTCCCCSSCCCEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----cCCCcCCCCCCcccccccee
Confidence 56999999 8888864 468999866542 22322 23568999999998887753
No 99
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.31 E-value=0.38 Score=36.78 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=36.2
Q ss_pred ecCCCCcccccccc------cCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007366 362 LRCPMSGSRIKVAG------RFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 362 L~CPls~~ri~~P~------Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
+.||+-+..+..|. ....|.|.-|.+- ..|+.. ...||+|.+.+...++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-----CCCCCCCCccCCcccee
Confidence 57999999988874 5568999865542 344443 34899999998877664
No 100
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.17 E-value=0.44 Score=37.35 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=36.7
Q ss_pred ecCCCCcccccccc------cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007366 362 LRCPMSGSRIKVAG------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 362 L~CPls~~ri~~P~------Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
+.|||-+..+..|. ....|.|.-|.+ +..|+... -.||+|.+.+...++.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCCBCCCCSCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----CCCCCCCCccChhhee
Confidence 57999999998884 567899986664 33444422 3899999998877653
No 101
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.86 E-value=0.45 Score=38.21 Aligned_cols=51 Identities=24% Similarity=0.507 Sum_probs=36.3
Q ss_pred eecCCCCcccccccc--cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007366 361 NLRCPMSGSRIKVAG--RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 361 SL~CPls~~ri~~P~--Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
.+.|||-+..+..|. +...|.|.-|++ +..|+.. ...||+|.+.+...++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-----HDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-----TCSCTTTCCCCCCSCSC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-----CCcCcCcCCccCCcccC
Confidence 567999988887554 335799987666 3445532 25899999998876654
No 102
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=84.64 E-value=0.61 Score=36.35 Aligned_cols=45 Identities=24% Similarity=0.515 Sum_probs=34.2
Q ss_pred ecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCC
Q 007366 362 LRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
..||+-+..+..|+....|.|.-|++- ..|+... ..||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----PTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----CSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-----CcCcCCChhhH
Confidence 469999999988888889999877663 3455422 58999998764
No 103
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.58 E-value=0.79 Score=37.34 Aligned_cols=51 Identities=18% Similarity=0.426 Sum_probs=36.7
Q ss_pred eecCCCCcccccc----cccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCC
Q 007366 361 NLRCPMSGSRIKV----AGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLEN 414 (606)
Q Consensus 361 SL~CPls~~ri~~----P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (606)
.+.|||-+..+.. |+.. .|.|.-|.+- ..|+... .....||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS--INGVRCPFCSKITRITS 70 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBCCSS
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC--CCCcCCCCCCCcccchh
Confidence 4779999999887 6655 7999866653 3344322 34689999999887654
No 104
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.12 E-value=0.32 Score=38.58 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=34.7
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCC
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (606)
.+.|||-+..+..|+.. .|.|.-|++ =+...... ...||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~fC~~--Ci~~~~~~--~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHVFCYL--CVKGASWL--GKRCALCRQEIPEDF 63 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEEEEHH--HHHHCTTC--SSBCSSSCCBCCHHH
T ss_pred CCCCccCCcccCCCEEc-cCCCHHHHH--HHHHHHHC--CCcCcCcCchhCHhh
Confidence 46799999999999876 699995544 33332222 268999999876543
No 105
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.59 E-value=0.74 Score=36.79 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=33.2
Q ss_pred ecCCCCccccccc--ccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCC
Q 007366 362 LRCPMSGSRIKVA--GRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLE 413 (606)
Q Consensus 362 L~CPls~~ri~~P--~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~ 413 (606)
..|||-+..+..+ ++...|.|.-|++ +..||..+ ..||+|.+.+.+.
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----RTCPICRADSGPS 73 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----SSCTTTCCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----CcCcCcCCcCCCC
Confidence 4688888877766 4556799987666 45566542 4799999887653
No 106
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=80.07 E-value=1.4 Score=32.65 Aligned_cols=44 Identities=20% Similarity=0.529 Sum_probs=29.7
Q ss_pred ecCCCCcccccc---cccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCC
Q 007366 362 LRCPMSGSRIKV---AGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNY 410 (606)
Q Consensus 362 L~CPls~~ri~~---P~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~ 410 (606)
..|||-+..+.. +.+...|.|.-|.+ +..|+... ..||+|.+.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 53 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPS 53 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSS
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcC
Confidence 357777777644 45556799986665 34455443 7899999875
No 107
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.13 E-value=2.1 Score=32.81 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHhcc
Q 007366 16 IKELKDVLTQLGLSKQGKKQDLVDRILAILS 46 (606)
Q Consensus 16 i~ELk~vL~~lglsk~G~K~eL~~ril~~l~ 46 (606)
-.|||.-|..+|-+-+|...||+||+-.|.-
T Consensus 13 ~~ELQaKLaE~GAPi~g~REElvdRLk~Y~~ 43 (58)
T 2do5_A 13 AQELQAKLAEIGAPIQGNREELVERLQSYTR 43 (58)
T ss_dssp HHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCcccccHHHHHHHHHHHhh
Confidence 4799999999999999999999999988743
No 108
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.36 E-value=1.7 Score=33.33 Aligned_cols=47 Identities=19% Similarity=0.509 Sum_probs=34.3
Q ss_pred cceeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCC
Q 007366 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPIC 406 (606)
Q Consensus 357 ~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC 406 (606)
.+.-.+.|||-+..+..|+.. .|.|.-|.+ +..|+.. ......||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET--SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH--CSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc--CCCCCcCcCC
Confidence 345568899999999999987 899996654 2334432 3356789998
No 109
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.82 E-value=1.2 Score=35.35 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=31.6
Q ss_pred eecCCCCcccccccccC--CCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCC
Q 007366 361 NLRCPMSGSRIKVAGRF--KPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg--~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
...|||-+..+..|... ..|.|.-|++ +..|+..+ ..||+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 45799998888766544 2799986654 34455432 28999998764
No 110
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=76.62 E-value=1.4 Score=38.23 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=36.9
Q ss_pred eecCCCCcccccccc------cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007366 361 NLRCPMSGSRIKVAG------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 361 SL~CPls~~ri~~P~------Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
.+.|||-+..+..|+ ....|.|.-|++ +..||. . .-.||+|.+.+...++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~--~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---N--ANTCPTCRKKINHKRYH 64 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT---T--CSBCTTTCCBCTTTCEE
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH---h--CCCCCCCCCcCcccccc
Confidence 368999999999883 567899986654 334443 2 23999999998766553
No 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.66 E-value=0.7 Score=40.66 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=29.0
Q ss_pred CCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007366 124 TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 124 ~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Cr 167 (606)
.++||.|+. |...+|..|+++..+..+.+ ....|+|+.|+
T Consensus 23 ~~~Ll~C~~--C~~~~H~~Cl~~~~~~~~~~--~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCAD--CGNSGHPSCLKFSPELTVRV--KALRWQCIECK 62 (112)
T ss_dssp CCCCEECTT--TCCEECHHHHTCCHHHHHHH--HTSCCCCTTTC
T ss_pred chhceEhhh--cCCCCCCchhcCCHHHHHHh--hccccccccCC
Confidence 468999999 99999999998642111111 13579999987
No 112
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.89 E-value=3 Score=31.05 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=31.9
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHHHHHHHhc-CCCeeeccCC
Q 007366 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQ-RSRKWQCPIC 406 (606)
Q Consensus 359 ~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~-~~~~W~CPiC 406 (606)
.-.+.|||-+..++.|+. ..|.|.-|. .=+..... ......||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~--~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVI-IECGHNFCK--ACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCC-CSSCCCCCH--HHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEe-CCCCCccCH--HHHHHHHHhcCCCCCCCCC
Confidence 345789999999999987 579999554 34434322 2356789998
No 113
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.66 E-value=1.2 Score=33.81 Aligned_cols=46 Identities=30% Similarity=0.579 Sum_probs=32.8
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCC
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (606)
.|.|||-...+..|+. ..|.|.-|.+-. ......||+|.+.+....
T Consensus 6 ~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci-------~~~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKL-LPCLHTLCSGCL-------EASGMQCPICQAPWPLGA 51 (56)
T ss_dssp CSSCSSSCSSCBCCSC-STTSCCSBTTTC-------SSSSSSCSSCCSSSSCCS
T ss_pred CCCceEeCCccCCeEE-cCCCCcccHHHH-------ccCCCCCCcCCcEeecCC
Confidence 3679999999999965 569998665431 113468999998876543
No 114
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=71.28 E-value=4.9 Score=32.92 Aligned_cols=51 Identities=20% Similarity=0.482 Sum_probs=34.2
Q ss_pred ecCCCCccccccc-ccCCC--CCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCe
Q 007366 362 LRCPMSGSRIKVA-GRFKP--CVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENI 415 (606)
Q Consensus 362 L~CPls~~ri~~P-~Rg~~--C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L 415 (606)
+.|||-...+.++ .+... |.|.-|.+= +..+.. .....||+|.+.+....+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~C--l~~~~~-~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFC--WHRIRT-DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHH--HHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHH--HHHHHh-cCCCCCCCCCCccCCCch
Confidence 5699998877653 34433 999866543 333322 246899999999877655
No 115
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=71.27 E-value=2.5 Score=31.25 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=28.3
Q ss_pred ecCCCCcccccc---cccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCC
Q 007366 362 LRCPMSGSRIKV---AGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 362 L~CPls~~ri~~---P~Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
..|||-+..+.. +.....|.|.-|++- ..|+. ....||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-----SHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-----TCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-----cCCcCcCCCCEeE
Confidence 357777777765 444446999855542 23332 2458999998764
No 116
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=70.41 E-value=3.7 Score=37.26 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=32.9
Q ss_pred HHHHhccHHHHHHHHHHhCCCCCC--ChHHHHHHHHHhcc
Q 007366 9 EKLAHFRIKELKDVLTQLGLSKQG--KKQDLVDRILAILS 46 (606)
Q Consensus 9 ~~l~~fRi~ELk~vL~~lglsk~G--~K~eL~~ril~~l~ 46 (606)
..|+..-++||+++...||+..-. +|+||+.+||..+.
T Consensus 4 ~eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~~~ 43 (130)
T 1a62_A 4 TELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHA 43 (130)
T ss_dssp HHHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHH
Confidence 457889999999999999999766 99999999987544
No 117
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.87 E-value=2.1 Score=32.93 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=33.3
Q ss_pred eeecCCCCcccccccc------cCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCC
Q 007366 360 VNLRCPMSGSRIKVAG------RFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 360 vSL~CPls~~ri~~P~------Rg~~C~HlqCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
-.+.|||-+..+..|. ....|.|.-|.+- ..|+.. .-.||+|.+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 3467999999998884 4468999866542 334432 348999998875
No 118
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=68.90 E-value=2.7 Score=32.72 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=30.4
Q ss_pred eecCCCCccccc--ccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCC
Q 007366 361 NLRCPMSGSRIK--VAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 361 SL~CPls~~ri~--~P~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 412 (606)
...|||-+..+. .+++...|.|.-|++ +..|+..+ ..||+|.+.+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----KKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----CCCcCcCccccC
Confidence 356888877664 345556799986654 33454432 359999987653
No 119
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=68.05 E-value=2.8 Score=35.95 Aligned_cols=48 Identities=25% Similarity=0.447 Sum_probs=32.0
Q ss_pred cCCCCcccccccc-----------------cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCC
Q 007366 363 RCPMSGSRIKVAG-----------------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNY 410 (606)
Q Consensus 363 ~CPls~~ri~~P~-----------------Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~ 410 (606)
.|||-+..+..|. +...|.|.-|++ +..||....+...-.||+|.+.+
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 4888777776554 246799985544 44566544434567999999776
No 120
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=66.43 E-value=1.6 Score=38.42 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=28.5
Q ss_pred CCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007366 124 TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 124 ~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Cr 167 (606)
.+.||.|+. |...+|..|+++....++.++ ...|+|+.|+
T Consensus 20 ~~~Li~C~~--C~~~~H~~Cl~~~~~~~~~~~--~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCAD--CGRSGHPTCLQFTLNMTEAVK--TYKWQCIECK 59 (114)
T ss_dssp CCCCEECSS--SCCEECTTTTTCCHHHHHHHH--HTTCCCGGGC
T ss_pred CCCCeEeCC--CCCccchhhCCChhhhhhccC--CCccCccccC
Confidence 468999999 999999999987632111111 2478888875
No 121
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=64.88 E-value=4.3 Score=40.93 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=29.9
Q ss_pred HhccHHHHHHHHHHhCCCCCCChHHHHHHHHHh
Q 007366 12 AHFRIKELKDVLTQLGLSKQGKKQDLVDRILAI 44 (606)
Q Consensus 12 ~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~ 44 (606)
..+.++.||.+....|++.+|+|.+|++||.+.
T Consensus 2 ~~lk~~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 2 ATVKLSFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp -CCCHHHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 457789999999999999999999999999885
No 122
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.20 E-value=2.1 Score=34.37 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=33.9
Q ss_pred ceeeecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCCC
Q 007366 358 IGVNLRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 358 ~~vSL~CPls~~ri~~P~Rg~~C~Hl-qCFDl~~fL~~n~~~~~W~CPiC~k~~~~ 412 (606)
+.-.+.||+-+..+..|+. ..|.|. -|.+=.. ....||+|.+.+..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAE--------AVDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH--------HCSBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh--------CCCCCccCCceecC
Confidence 3446789999999988876 579998 6655431 12789999987743
No 123
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=61.38 E-value=2.1 Score=34.37 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=31.6
Q ss_pred eecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~Hl-qCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
.+.||+-+..+..|+-. .|.|. -|++-..- ...||+|.+.+.
T Consensus 24 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~--------~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFV-PCGHLVTCKQCAEA--------VDKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTT--------CSBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCEEEc-CCCChhHHHHhhhc--------CccCCCcCcCcc
Confidence 46799999998888764 89998 66654321 179999998764
No 124
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=59.80 E-value=3.5 Score=35.74 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=37.8
Q ss_pred eecCCCCcccccccc------cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007366 361 NLRCPMSGSRIKVAG------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 361 SL~CPls~~ri~~P~------Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
.+.||+-...+..|. ....|.|.-|++ +..|+.. ...||+|.+.+...+|+
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-----CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-----CCCCCCCCCcCChhcce
Confidence 356999888888763 445799998776 4556653 24899999999887764
No 125
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=59.73 E-value=11 Score=35.56 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=38.2
Q ss_pred chHHHHHHHHHh-ccHHHHHHHHHHhCCCCCCChHHHHHHHHHhcc
Q 007366 2 DLIASCKEKLAH-FRIKELKDVLTQLGLSKQGKKQDLVDRILAILS 46 (606)
Q Consensus 2 ~~~~~~~~~l~~-fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~ 46 (606)
+++-.+|++|.. +-..||+++|.+=++.-+|.+.+|++|+.-.+-
T Consensus 29 ~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm~ 74 (160)
T 2riq_A 29 DLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMV 74 (160)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 566788999986 999999999999999888999999998865443
No 126
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=58.98 E-value=13 Score=33.20 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=34.8
Q ss_pred HHHHHhccHHHHHHHHHHhCCCCCC--ChHHHHHHHHHhcc
Q 007366 8 KEKLAHFRIKELKDVLTQLGLSKQG--KKQDLVDRILAILS 46 (606)
Q Consensus 8 ~~~l~~fRi~ELk~vL~~lglsk~G--~K~eL~~ril~~l~ 46 (606)
+..|+.+++++|++-|..-+++..| .|.|||+=||.-..
T Consensus 73 ~~~l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl~~~~ 113 (120)
T 1y02_A 73 REELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQP 113 (120)
T ss_dssp HHHHHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHHTCC
T ss_pred HHHHhcccHHHHHHHHHhCCCCcccceeHHHHHHHHHhcCC
Confidence 5789999999999999999999888 68999998887663
No 127
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.66 E-value=5.7 Score=32.35 Aligned_cols=33 Identities=21% Similarity=0.570 Sum_probs=20.3
Q ss_pred CCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCe
Q 007366 378 KPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENI 415 (606)
Q Consensus 378 ~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L 415 (606)
..|.|.-+++ +..||.. . -.||+|.+.+.+.++
T Consensus 46 ~~C~H~FH~~Ci~~Wl~~---~--~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 46 GECNHSFHNCCMSLWVKQ---N--NRCPLCQQDWVVQRI 79 (81)
T ss_dssp ETTSCEEEHHHHHHHTTT---C--CBCTTTCCBCCEEEE
T ss_pred CCCCCccChHHHHHHHHh---C--CCCCCcCCCcchhhc
Confidence 3599983333 3334432 2 289999998876543
No 128
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.42 E-value=9.5 Score=32.28 Aligned_cols=48 Identities=17% Similarity=0.383 Sum_probs=37.6
Q ss_pred CceeccCCCCCC------CCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 112 TKVCCPCGSSLE------TESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 112 ~~~rCiC~~sl~------~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
+...|+|++--. .-.||-|.. |. ..-|..|..+... +..|.|..|+..
T Consensus 25 dA~~Clc~~GR~~~~~~~~W~L~lC~~--Cgs~gtH~~Cs~l~~~--------~~~weC~~C~~v 79 (85)
T 1weq_A 25 DAPICLYEQGRDSFEDEGRWRLILCAT--CGSHGTHRDCSSLRPN--------SKKWECNECLPA 79 (85)
T ss_dssp CCSCCCSTTCSSCCBSSSTTBCEECSS--SCCCEECSGGGTCCTT--------CSCCCCTTTSCC
T ss_pred CccccCCCCCcccccCCCCEEEEeCcc--cCCchhHHHHhCCcCC--------CCCEECCcCccc
Confidence 578899987533 256999999 98 5789999998533 578999999843
No 129
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=55.95 E-value=4.6 Score=31.45 Aligned_cols=45 Identities=20% Similarity=0.436 Sum_probs=30.1
Q ss_pred cCCCCccccccccc-CCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007366 363 RCPMSGSRIKVAGR-FKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 363 ~CPls~~ri~~P~R-g~~C~Hl-qCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
.|++-+.+.+.++= ...|.|+ -|++=..-+.. + .++||+|.+++.
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~--~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK--A--GASCPICKKEIQ 55 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH--T--TCBCTTTCCBCC
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH--h--CCcCCCcCchhh
Confidence 58888777665542 2379998 57766554432 2 379999998873
No 130
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.69 E-value=2.6 Score=32.93 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=32.5
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCC
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (606)
.+.|||-+..+.. ....|.|.-| ..=+..... ....||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc--~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFC--QKCIDKWSD--RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEEC--HHHHHHSSC--CCSSCHHHHHCTTCCC
T ss_pred CCCCeeCCcCccC--cccCCCCccc--HHHHHHHHH--CcCcCCCcCCcccCCC
Confidence 5679998888776 5567999844 333333222 4678999988776443
No 131
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=50.88 E-value=7.1 Score=36.03 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=35.1
Q ss_pred ceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCC--CCCCCCCCCcccccccccc
Q 007366 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKP--TEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~--~~~~p~~P~~fyCe~Crl~ 169 (606)
.-+| +|+ .+|+++-|+. |..-||..|+..+-.+ ++.+..-.+.|.|+.|+..
T Consensus 63 ~d~C~vC~---~GG~LlcCD~--Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCA---EGGNLICCDF--CHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSC---CCSSEEECSS--SCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCeecccC---CCCcEEeCCC--CCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3456 465 4678999998 9999999999854321 0011011478999999864
No 132
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=50.43 E-value=14 Score=29.92 Aligned_cols=42 Identities=19% Similarity=0.518 Sum_probs=26.6
Q ss_pred CCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCccce
Q 007366 124 TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWV 176 (606)
Q Consensus 124 ~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~DPF~~ 176 (606)
....|||+.+.|.+|--..=. +.. ..+|+.|||-+ ..||.+.
T Consensus 15 ~~~WVQCd~p~C~KWR~LP~~-~~~------~~lpd~W~C~m----N~d~~~~ 56 (69)
T 2e61_A 15 CLVWVQCSFPNCGKWRRLCGN-IDP------SVLPDNWSCDQ----NTDVQYN 56 (69)
T ss_dssp CCCEEECSSTTTCCEEECCSS-CCT------TTSCTTCCGGG----CSCGGGC
T ss_pred CCeEEEeCccccCcccCCccc-ccc------ccCCCcCEeCC----CCCCccC
Confidence 357999997779999765221 111 12578999854 3366553
No 133
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=49.46 E-value=7.6 Score=30.24 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=30.1
Q ss_pred cCCCCcccccccccC-CCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007366 363 RCPMSGSRIKVAGRF-KPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 363 ~CPls~~ri~~P~Rg-~~C~Hl-qCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
.|++-+.+.+.++-- ..|.|+ -|++=..-+.. ..+.||+|.+.+.
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK----RNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH----TTCCCTTTCCCCC
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH----cCCcCCCcCcchh
Confidence 588888777776531 379999 46664443321 2478999998873
No 134
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=49.09 E-value=8.6 Score=31.84 Aligned_cols=47 Identities=19% Similarity=0.484 Sum_probs=28.8
Q ss_pred eecCCCCcccccc--cccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCC
Q 007366 361 NLRCPMSGSRIKV--AGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 361 SL~CPls~~ri~~--P~Rg~~C~HlqCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 412 (606)
...|||-+..+.. +.+...|.|.-|++ +..||. . .-.||+|.+.+.+
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~---~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ---K--SGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT---T--TCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH---c--CCcCcCcCccCCC
Confidence 3568887766654 23334599975544 334443 2 2389999987754
No 135
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=48.15 E-value=20 Score=36.28 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccch
Q 007366 4 IASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (606)
Q Consensus 4 ~~~~~~~l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~ 48 (606)
++.+...++..-+.||+..|..+||+..|.|..|..|+..+....
T Consensus 19 ~~~~~~~~~~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~~~ 63 (299)
T 1zbh_A 19 IAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 63 (299)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHhhchhhhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence 456667788888999999999999999999999999988776553
No 136
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.10 E-value=4.7 Score=31.91 Aligned_cols=46 Identities=26% Similarity=0.470 Sum_probs=32.0
Q ss_pred ceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007366 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~ 169 (606)
...| ||-.....+..+..-. |+-.||..|+..--+ ....||.||..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~--C~H~fh~~Ci~~w~~---------~~~~CP~Cr~~ 69 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLP--CNHEFHAKCVDKWLK---------ANRTCPICRAD 69 (75)
T ss_dssp CCEETTTTEECCBTCEEEEET--TTEEEETTHHHHHHH---------HCSSCTTTCCC
T ss_pred CCCCeECCcccCCCCeEEEEC--CCCHhHHHHHHHHHH---------cCCcCcCcCCc
Confidence 3445 7888776666666666 998999999964211 13479999865
No 137
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=47.65 E-value=2.3 Score=33.55 Aligned_cols=14 Identities=29% Similarity=1.037 Sum_probs=11.0
Q ss_pred cCCCeeeccCCCCC
Q 007366 396 QRSRKWQCPICLRN 409 (606)
Q Consensus 396 ~~~~~W~CPiC~k~ 409 (606)
...++|.||+|+..
T Consensus 29 ~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 29 YRAKLWACNFCYQR 42 (59)
T ss_dssp GGGTEEECSSSCCE
T ss_pred CCCCEEEcccCCCc
Confidence 45679999999853
No 138
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=47.15 E-value=8.7 Score=33.52 Aligned_cols=45 Identities=36% Similarity=0.665 Sum_probs=34.5
Q ss_pred cCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCC
Q 007366 363 RCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNY 410 (606)
Q Consensus 363 ~CPls~~ri~~P~Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~ 410 (606)
-||.-..+|.+=+|-..|+|.-|||-..-... ...=.||.|..++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~---~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK---KGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh---ccCCCCcCcCCee
Confidence 37788889999999999999999987654432 2335799998665
No 139
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=41.81 E-value=6.6 Score=32.03 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=29.4
Q ss_pred ecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007366 362 LRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~Hl-qCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
+.|++-+.....|+- ..|.|. -|++=.. ..|.||+|.+.+.
T Consensus 19 ~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINSTF-CPCGHTVCCESCAA--------QLQSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCEEE-ETTCBCCBCHHHHT--------TCSBCTTTCCBCC
T ss_pred CEeEEeCcccCcEEE-ECCCCHHHHHHHHH--------hcCcCCCCCchhh
Confidence 468888888777765 479998 5665332 2369999998774
No 140
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.51 E-value=6.1 Score=32.86 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=37.6
Q ss_pred eecCCCCcccccccccC--CCCCcccccc-HHHHHHHh--cC-CCeeeccC--CCCC--CCCC
Q 007366 361 NLRCPMSGSRIKVAGRF--KPCVHMGCFD-LDVFVELN--QR-SRKWQCPI--CLRN--YSLE 413 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg--~~C~HlqCFD-l~~fL~~n--~~-~~~W~CPi--C~k~--~~~~ 413 (606)
.+.|||-+..+..|.-. ..|.|.-|.+ +..|+... .. .....||. |... +.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 35699998888777543 4799998876 56777654 22 24689999 9988 5543
No 141
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=41.12 E-value=7.2 Score=29.28 Aligned_cols=12 Identities=33% Similarity=1.127 Sum_probs=9.3
Q ss_pred CCeeeccCCCCC
Q 007366 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 346999999864
No 142
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=39.59 E-value=6.9 Score=40.99 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=33.5
Q ss_pred eeeecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007366 359 GVNLRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 359 ~vSL~CPls~~ri~~P~Rg~~C~Hl-qCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
.-.+.||+-...+..|+.- .|.|. -|.+-..- .+.||+|...+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~--------~~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPS--------LRKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGG--------CSBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEc-CCCChhHhHHHHhc--------CCcCCCCCCCcc
Confidence 3458899999999988876 89998 66654321 179999998764
No 143
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=38.75 E-value=3.9 Score=34.48 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=13.6
Q ss_pred eeccCCCCCCCCCCee
Q 007366 401 WQCPICLRNYSLENII 416 (606)
Q Consensus 401 W~CPiC~k~~~~~~L~ 416 (606)
-+||+|++.+.+++|+
T Consensus 9 ~~~PlCG~~L~W~eLI 24 (95)
T 2k5c_A 9 AKCPICGSPLKWEELI 24 (95)
T ss_dssp EECSSSCCEECHHHHH
T ss_pred ccCCcCCCccCHHHHH
Confidence 6899999999887764
No 144
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.10 E-value=17 Score=28.72 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=27.7
Q ss_pred ecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007366 362 LRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~Hl-qCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
..|++-+.+...++ ...|.|+ -|.+=.. ..++||+|.+.+.
T Consensus 16 ~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~--------~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 16 KDCVVCQNGTVNWV-LLPCRHTCLCDGCVK--------YFQQCPMCRQFVQ 57 (68)
T ss_dssp SCCSSSSSSCCCCE-ETTTTBCCSCTTHHH--------HCSSCTTTCCCCC
T ss_pred CCCCCcCcCCCCEE-EECCCChhhhHHHHh--------cCCCCCCCCcchh
Confidence 45888777665433 3578888 5666544 1389999998764
No 145
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=37.99 E-value=9.8 Score=31.52 Aligned_cols=10 Identities=50% Similarity=1.630 Sum_probs=8.8
Q ss_pred CCeeeccCCC
Q 007366 398 SRKWQCPICL 407 (606)
Q Consensus 398 ~~~W~CPiC~ 407 (606)
..+|.||||.
T Consensus 15 ~~tWVCpICs 24 (76)
T 2j9u_B 15 VSTWVCPICM 24 (76)
T ss_dssp CEEEECTTTC
T ss_pred ccceECcccc
Confidence 4689999998
No 146
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=34.63 E-value=19 Score=32.66 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=26.9
Q ss_pred HHhccHHHHHHHHHHhCCC--CCCChHHHHHHHH
Q 007366 11 LAHFRIKELKDVLTQLGLS--KQGKKQDLVDRIL 42 (606)
Q Consensus 11 l~~fRi~ELk~vL~~lgls--k~G~K~eL~~ril 42 (606)
|..+-+.|||..|..+|+. ++-+|.||+.-+.
T Consensus 89 l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL~ 122 (131)
T 2out_A 89 LNTFTVEQLKAQLTERGITFKQSATKAELIALFA 122 (131)
T ss_dssp STTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHCC
T ss_pred cccccHHHHHHHHHHcCCcccccCCHHHHHHHHH
Confidence 4567899999999999997 8999999976443
No 147
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=33.02 E-value=13 Score=28.50 Aligned_cols=12 Identities=33% Similarity=1.226 Sum_probs=9.4
Q ss_pred CCeeeccCCCCC
Q 007366 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 346999999864
No 148
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.88 E-value=13 Score=28.90 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007366 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 346999999865
No 149
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=32.77 E-value=12 Score=29.11 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007366 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 346999999864
No 150
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=32.59 E-value=17 Score=38.73 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=35.8
Q ss_pred eecCCCCcccccccccCCCCCccccccHH-HHHHHhcCCCeeeccCCCCCCCCCCe
Q 007366 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQRSRKWQCPICLRNYSLENI 415 (606)
Q Consensus 361 SL~CPls~~ri~~P~Rg~~C~HlqCFDl~-~fL~~n~~~~~W~CPiC~k~~~~~~L 415 (606)
.+.||+-...+..|+. ..|.|.-|.+-. .|+.. ..-.||+|.+.+....+
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~----~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQES----EGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHH----TCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhc----CCCCCCCCCCccCCcee
Confidence 3689999999988876 589998776543 34431 33589999998765443
No 151
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=31.66 E-value=13 Score=28.57 Aligned_cols=12 Identities=33% Similarity=1.132 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007366 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 346999999864
No 152
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=30.04 E-value=15 Score=30.87 Aligned_cols=11 Identities=36% Similarity=1.093 Sum_probs=9.1
Q ss_pred CeeeccCCCCC
Q 007366 399 RKWQCPICLRN 409 (606)
Q Consensus 399 ~~W~CPiC~k~ 409 (606)
..|.||+|+..
T Consensus 59 ddW~CPvCga~ 69 (81)
T 2kn9_A 59 DDWSCPDCGAA 69 (81)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 46999999864
No 153
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.23 E-value=14 Score=29.97 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007366 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 346999999865
No 154
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=27.39 E-value=30 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.492 Sum_probs=19.6
Q ss_pred cCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCC
Q 007366 376 RFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 376 Rg~~C~HlqCFDl~~fL~~n~~~~~W~CPiC~k~~~~ 412 (606)
+-..|.|. |...=...--.+ .-.||+|.+...+
T Consensus 69 ~~~~C~H~--FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 69 AWGVCNHA--FHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp EEETTSCE--EEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred eecccCcE--ECHHHHHHHHHc--CCcCcCCCCccee
Confidence 33568887 444443332222 3579999988654
No 155
>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress, phosphoprotein, neurotrophic factor, sialic acid, glycoprotein, growth factor, hormone; 2.80A {Homo sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
Probab=26.43 E-value=7 Score=36.61 Aligned_cols=36 Identities=33% Similarity=0.632 Sum_probs=24.2
Q ss_pred HHhccHHHHHHHHHHhCCCCCC--ChHHHHHHHHHhcc
Q 007366 11 LAHFRIKELKDVLTQLGLSKQG--KKQDLVDRILAILS 46 (606)
Q Consensus 11 l~~fRi~ELk~vL~~lglsk~G--~K~eL~~ril~~l~ 46 (606)
|..+||+|||.||..-|+.=.| -|.|.+.||..+-.
T Consensus 108 l~KlrVkeLK~IL~d~g~~C~GC~EK~DfV~ri~el~p 145 (158)
T 2w51_A 108 LKKLRVKELKKILDDWGETCKGCAEKSDYIRKINELMP 145 (158)
T ss_dssp CCTTHHHHHHHHTTCCCTTCSSCHHHHTTC--------
T ss_pred hhhccHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhcc
Confidence 5679999999999999999777 47778877776543
No 156
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=26.05 E-value=25 Score=29.47 Aligned_cols=33 Identities=21% Similarity=0.540 Sum_probs=26.6
Q ss_pred eec-cCCCCCCCCCeeeecCCCCCCcccccccccC
Q 007366 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIP 147 (606)
Q Consensus 114 ~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~ 147 (606)
.+| +|.+.. .|--|+|....|...||..|-...
T Consensus 18 l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 18 LTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHHH
T ss_pred CCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHHC
Confidence 455 687652 578999999999999999998654
No 157
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.71 E-value=20 Score=30.44 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=9.9
Q ss_pred CCeeeccCCCCCC
Q 007366 398 SRKWQCPICLRNY 410 (606)
Q Consensus 398 ~~~W~CPiC~k~~ 410 (606)
...|.||+|+..-
T Consensus 66 PddW~CPvCga~K 78 (87)
T 1s24_A 66 PDDWCCPDCGATK 78 (87)
T ss_dssp CTTCCCSSSCCCG
T ss_pred CCCCCCCCCCCCH
Confidence 3469999998643
No 158
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.16 E-value=27 Score=20.57 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.4
Q ss_pred eeeccCCCCCCCC
Q 007366 400 KWQCPICLRNYSL 412 (606)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (606)
.+.|++|++.+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 4789999988754
No 159
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.73 E-value=22 Score=21.15 Aligned_cols=13 Identities=15% Similarity=0.756 Sum_probs=10.4
Q ss_pred CeeeccCCCCCCC
Q 007366 399 RKWQCPICLRNYS 411 (606)
Q Consensus 399 ~~W~CPiC~k~~~ 411 (606)
..|.|++|++.+.
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 3589999998764
No 160
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.42 E-value=23 Score=23.88 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=9.7
Q ss_pred CeeeccCCCCCC
Q 007366 399 RKWQCPICLRNY 410 (606)
Q Consensus 399 ~~W~CPiC~k~~ 410 (606)
+++.||+|...+
T Consensus 2 ~k~~CpvCk~q~ 13 (28)
T 2jvx_A 2 SDFCCPKCQYQA 13 (28)
T ss_dssp CCEECTTSSCEE
T ss_pred CcccCccccccC
Confidence 578999998654
No 161
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=24.30 E-value=67 Score=34.63 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=33.4
Q ss_pred HHHHhccHHHHHHHHHHhCCC--CCCChHHHHHHHHHhccc
Q 007366 9 EKLAHFRIKELKDVLTQLGLS--KQGKKQDLVDRILAILSD 47 (606)
Q Consensus 9 ~~l~~fRi~ELk~vL~~lgls--k~G~K~eL~~ril~~l~~ 47 (606)
..|+..-++||+.+.+.||+. ..=|||||+..||.....
T Consensus 11 ~~l~~~~~~~l~~~a~~~~~~~~~~~~k~~l~~~~~~~~~~ 51 (427)
T 3l0o_A 11 SELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTE 51 (427)
T ss_dssp HHHHHSCHHHHHHHHHHTTCTTGGGSCHHHHHHHHHHGGGS
T ss_pred HHHhcCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHh
Confidence 578899999999999999998 467999999999875443
No 162
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=23.84 E-value=35 Score=36.08 Aligned_cols=55 Identities=15% Similarity=0.329 Sum_probs=32.0
Q ss_pred cCCCCCCC-CCe--eeecCCCCCCccccccccc-----CCCCCCCCCCCCCcccccccccccCCcc
Q 007366 117 PCGSSLET-ESM--IKCEDPRCPVWQHMSCVII-----PEKPTEGNPPVPELFYCEICRLSRADPF 174 (606)
Q Consensus 117 iC~~sl~~-~~m--I~C~~~~C~~wqH~~Cv~i-----~~k~~~~~p~~P~~fyCe~Crl~r~DPF 174 (606)
||=+.... +.+ ..|.++.|+..||..|+.- +... .++. -..--||.||-.-.-.|
T Consensus 313 ICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sR-qSFn--vi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 313 ICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK-TFLE--VSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp SSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSS-CTTT--CCEEECTTTCCEEEGGG
T ss_pred ccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCcc-cccc--ccCCCCCCCCCcCCccH
Confidence 56554332 333 5799999999999999942 1110 1110 11236999987543334
No 163
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=23.19 E-value=26 Score=28.95 Aligned_cols=40 Identities=13% Similarity=0.303 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhccHHH---HHHHHHHhCCCCCCChHHHHHHHHHhcc
Q 007366 2 DLIASCKEKLAHFRIKE---LKDVLTQLGLSKQGKKQDLVDRILAILS 46 (606)
Q Consensus 2 ~~~~~~~~~l~~fRi~E---Lk~vL~~lglsk~G~K~eL~~ril~~l~ 46 (606)
|.-+.++..|..|+-.| +++|.++||++|+ + +.|+|--|.
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~----~-vNr~LY~L~ 54 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKK----K-INQQLYKLQ 54 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHH----H-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHH----H-HHHHHHHHH
Confidence 44556667777777777 7777777777762 3 555555444
No 164
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.97 E-value=28 Score=20.62 Aligned_cols=13 Identities=23% Similarity=0.894 Sum_probs=10.3
Q ss_pred eeeccCCCCCCCC
Q 007366 400 KWQCPICLRNYSL 412 (606)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (606)
.+.|++|++.+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4789999988753
No 165
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.93 E-value=29 Score=22.29 Aligned_cols=14 Identities=43% Similarity=0.997 Sum_probs=11.3
Q ss_pred CeeeccCCCCCCCC
Q 007366 399 RKWQCPICLRNYSL 412 (606)
Q Consensus 399 ~~W~CPiC~k~~~~ 412 (606)
..++|++|++.+.-
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 46999999998754
No 166
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.60 E-value=32 Score=20.39 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.4
Q ss_pred eeeccCCCCCCCC
Q 007366 400 KWQCPICLRNYSL 412 (606)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (606)
.+.|++|++.+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 4789999988754
No 167
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=21.43 E-value=32 Score=28.31 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=32.4
Q ss_pred ceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCC
Q 007366 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRAD 172 (606)
Q Consensus 113 ~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~Crl~r~D 172 (606)
...| ||-.....+..+..-. |+-.||..|+.---+ ....||.||..-..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~--C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELP--CHHYFHKPCVSIWLQ---------KSGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEET--TTEEEEHHHHHHHHT---------TTCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecC--CCChHHHHHHHHHHH---------cCCcCcCcCccCCC
Confidence 3445 7887765555555455 999999999864211 23479999976433
No 168
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.82 E-value=29 Score=20.60 Aligned_cols=13 Identities=31% Similarity=1.027 Sum_probs=10.3
Q ss_pred eeeccCCCCCCCC
Q 007366 400 KWQCPICLRNYSL 412 (606)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (606)
.+.|++|++.+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 5899999987643
No 169
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.76 E-value=31 Score=21.87 Aligned_cols=14 Identities=14% Similarity=0.653 Sum_probs=11.2
Q ss_pred CeeeccCCCCCCCC
Q 007366 399 RKWQCPICLRNYSL 412 (606)
Q Consensus 399 ~~W~CPiC~k~~~~ 412 (606)
..+.|++|++.+..
T Consensus 8 ~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 8 KTHLCDMCGKKFKS 21 (36)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred CCeecCcCCCCcCc
Confidence 46999999987753
No 170
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=20.49 E-value=40 Score=30.54 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=34.8
Q ss_pred ceec-cCCCCCCCCCeeeecCCCCCCcccccccccCCCC--CCCCCCCCCcccccccccc
Q 007366 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKP--TEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rC-iC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~--~~~~p~~P~~fyCe~Crl~ 169 (606)
..+| +|+. +|+++-|+. |..-||..|+...-.+ ++.+....+.|+|..|+..
T Consensus 57 ~~~C~vC~d---GG~LlcCd~--Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 57 DEQCRWCAE---GGNLICCDF--CHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BSSCTTTCC---CSEEEECSS--SSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCcCeecCC---CCeeEecCC--CchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3456 5763 578999998 9999999999853110 0001001478999999765
No 171
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.65 E-value=22 Score=20.95 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=10.1
Q ss_pred eeeccCCCCCCCC
Q 007366 400 KWQCPICLRNYSL 412 (606)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (606)
.+.|++|++.+.-
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 4789999987643
No 172
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=20.07 E-value=2.8e+02 Score=23.31 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHhccchhhhhhcccCCCCcHHHHHHHHHHHHHHhhcc
Q 007366 16 IKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRKLQVS 79 (606)
Q Consensus 16 i~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~~~~~~~~~~~~~~~~~~~k~i~~~Y~~m~~~ 79 (606)
..||+.+|..+|++ .+-+++|+....... ...+..++....+..++.+++..
T Consensus 33 ~~el~~~l~~~gl~-----~~el~~i~~~~D~d~-------dG~id~~EF~~~m~~~~~~~~g~ 84 (106)
T 1eh2_A 33 GDKVKPVLLNSKLP-----VDILGRVWELSDIDH-------DGMLDRDEFAVAMFLVYCALEKE 84 (106)
T ss_dssp HHHHHHHHHTTTCC-----HHHHHHHHHHHCSSC-------SSBCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCC-----HHHHHHHHHHHcCCC-------CCcCcHHHHHHHHHHHHHHHcCC
Confidence 57999999998865 344566777655322 22488889888888888766443
Done!