Query 007367
Match_columns 606
No_of_seqs 558 out of 3778
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 22:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 1.1E-88 2.4E-93 750.7 39.4 454 141-602 23-480 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 9.2E-82 2E-86 670.3 27.6 336 261-602 296-631 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 1.1E-80 2.3E-85 697.2 37.5 455 140-601 163-640 (774)
4 CHL00176 ftsH cell division pr 100.0 6.3E-76 1.4E-80 664.4 47.8 456 141-602 50-512 (638)
5 PRK10733 hflB ATP-dependent me 100.0 2.3E-68 4.9E-73 607.1 48.0 450 142-602 31-482 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 1.8E-65 3.8E-70 568.8 40.9 386 211-605 2-388 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 2.1E-57 4.6E-62 468.7 26.2 254 260-513 142-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.6E-53 1.2E-57 499.9 30.2 295 293-604 1621-1970(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-50 2.7E-55 443.8 26.3 325 178-511 345-676 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 1.2E-47 2.7E-52 414.9 24.0 245 264-511 506-771 (802)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 7.5E-45 1.6E-49 393.3 20.4 230 260-492 181-414 (802)
12 KOG0727 26S proteasome regulat 100.0 6.2E-44 1.3E-48 353.4 23.5 254 258-511 144-398 (408)
13 KOG0729 26S proteasome regulat 100.0 2.2E-44 4.7E-49 358.8 19.3 260 258-517 166-426 (435)
14 KOG0728 26S proteasome regulat 100.0 7E-44 1.5E-48 352.7 22.5 248 265-512 143-391 (404)
15 KOG0652 26S proteasome regulat 100.0 5.5E-44 1.2E-48 355.1 20.5 250 262-511 164-414 (424)
16 KOG0726 26S proteasome regulat 100.0 3.6E-44 7.8E-49 360.8 16.7 251 262-512 178-429 (440)
17 COG1223 Predicted ATPase (AAA+ 100.0 5.5E-43 1.2E-47 348.0 20.0 241 262-509 114-355 (368)
18 PTZ00454 26S protease regulato 100.0 1E-41 2.2E-46 368.1 27.3 251 262-512 138-389 (398)
19 KOG0736 Peroxisome assembly fa 100.0 3.6E-42 7.9E-47 380.1 22.5 249 261-511 664-934 (953)
20 KOG0738 AAA+-type ATPase [Post 100.0 9.3E-42 2E-46 354.6 20.5 243 263-510 206-470 (491)
21 PRK03992 proteasome-activating 100.0 1.7E-40 3.6E-45 358.7 26.9 254 262-515 124-378 (389)
22 PTZ00361 26 proteosome regulat 100.0 4.9E-40 1.1E-44 357.8 23.7 251 262-512 176-427 (438)
23 COG0464 SpoVK ATPases of the A 100.0 6.1E-39 1.3E-43 356.3 23.9 246 261-509 234-483 (494)
24 KOG0735 AAA+-type ATPase [Post 100.0 5.1E-39 1.1E-43 352.4 22.4 229 261-492 659-888 (952)
25 TIGR01243 CDC48 AAA family ATP 100.0 1.3E-38 2.8E-43 369.0 25.3 246 263-510 447-711 (733)
26 TIGR01242 26Sp45 26S proteasom 100.0 1E-37 2.2E-42 334.1 26.9 249 261-509 114-363 (364)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-37 2.6E-42 343.5 24.5 245 260-511 219-465 (489)
28 KOG0739 AAA+-type ATPase [Post 100.0 5.8E-39 1.3E-43 324.1 12.4 228 260-493 124-354 (439)
29 KOG0737 AAA+-type ATPase [Post 100.0 8.6E-38 1.9E-42 324.9 19.8 228 260-492 83-314 (386)
30 KOG0651 26S proteasome regulat 100.0 5.9E-38 1.3E-42 318.7 13.2 247 264-510 127-374 (388)
31 TIGR03689 pup_AAA proteasome A 100.0 1.3E-34 2.9E-39 319.5 25.2 261 262-524 175-493 (512)
32 PLN00020 ribulose bisphosphate 100.0 4.1E-32 8.9E-37 285.2 23.4 262 265-541 111-395 (413)
33 KOG0730 AAA+-type ATPase [Post 100.0 1.6E-32 3.5E-37 301.6 19.8 236 264-510 180-417 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 9.8E-33 2.1E-37 295.4 15.6 296 260-557 210-545 (744)
35 TIGR01243 CDC48 AAA family ATP 100.0 6.5E-32 1.4E-36 313.2 23.4 246 263-511 172-437 (733)
36 KOG0732 AAA+-type ATPase conta 100.0 8.9E-32 1.9E-36 309.9 18.7 247 263-512 259-528 (1080)
37 KOG0740 AAA+-type ATPase [Post 100.0 1.5E-30 3.2E-35 279.0 16.1 225 263-493 147-375 (428)
38 CHL00181 cbbX CbbX; Provisiona 99.9 3.4E-22 7.4E-27 208.0 19.7 212 269-492 23-257 (287)
39 TIGR02881 spore_V_K stage V sp 99.9 1E-21 2.2E-26 201.5 20.4 213 267-492 4-241 (261)
40 TIGR02880 cbbX_cfxQ probable R 99.9 9.2E-22 2E-26 204.5 19.8 214 267-492 19-256 (284)
41 KOG0743 AAA+-type ATPase [Post 99.9 2.2E-21 4.9E-26 207.4 16.1 207 266-481 198-412 (457)
42 PF00004 AAA: ATPase family as 99.9 1.4E-21 3E-26 177.0 11.9 130 305-438 1-132 (132)
43 KOG0742 AAA+-type ATPase [Post 99.9 1.6E-20 3.4E-25 197.2 18.5 231 266-507 352-610 (630)
44 PF01434 Peptidase_M41: Peptid 99.8 1.8E-20 3.9E-25 187.2 9.5 104 498-604 1-106 (213)
45 PRK00080 ruvB Holliday junctio 99.8 1.9E-18 4E-23 183.0 19.7 216 262-509 18-250 (328)
46 PF05496 RuvB_N: Holliday junc 99.8 1.8E-18 3.9E-23 172.2 16.4 190 264-485 19-225 (233)
47 KOG0744 AAA+-type ATPase [Post 99.8 8.2E-19 1.8E-23 180.3 14.3 238 267-508 140-413 (423)
48 KOG0735 AAA+-type ATPase [Post 99.8 2.4E-18 5.1E-23 190.6 18.3 262 269-541 408-683 (952)
49 TIGR00635 ruvB Holliday juncti 99.8 4.4E-18 9.6E-23 177.5 19.5 211 267-509 2-229 (305)
50 KOG0736 Peroxisome assembly fa 99.8 4.6E-18 1E-22 189.8 19.8 224 281-510 410-654 (953)
51 TIGR02902 spore_lonB ATP-depen 99.8 6.7E-18 1.5E-22 189.5 19.9 213 262-508 58-331 (531)
52 COG0464 SpoVK ATPases of the A 99.8 2.7E-17 5.9E-22 183.2 23.9 219 288-511 4-228 (494)
53 COG2255 RuvB Holliday junction 99.8 2.2E-17 4.7E-22 167.8 17.8 216 263-510 20-252 (332)
54 COG2256 MGS1 ATPase related to 99.8 1.2E-17 2.6E-22 176.5 15.6 204 265-511 20-240 (436)
55 TIGR02639 ClpA ATP-dependent C 99.7 2.1E-17 4.5E-22 192.2 17.0 223 265-511 178-431 (731)
56 TIGR00763 lon ATP-dependent pr 99.7 3.2E-17 7E-22 191.7 15.3 201 270-490 321-555 (775)
57 PRK00149 dnaA chromosomal repl 99.7 2.6E-16 5.7E-21 173.5 21.1 223 263-510 116-350 (450)
58 PRK14956 DNA polymerase III su 99.7 1.9E-16 4.1E-21 173.8 19.6 210 262-506 11-243 (484)
59 PRK14088 dnaA chromosomal repl 99.7 3.7E-16 8.1E-21 171.9 21.5 225 263-512 99-335 (440)
60 PRK12323 DNA polymerase III su 99.7 1.3E-16 2.8E-21 179.3 17.5 195 262-487 9-231 (700)
61 TIGR00362 DnaA chromosomal rep 99.7 5.9E-16 1.3E-20 168.5 21.8 223 263-511 104-339 (405)
62 PRK11034 clpA ATP-dependent Cl 99.7 1.7E-16 3.7E-21 183.9 18.0 224 266-513 183-437 (758)
63 PRK07003 DNA polymerase III su 99.7 3.3E-16 7.1E-21 178.0 18.7 196 262-488 9-227 (830)
64 TIGR02928 orc1/cdc6 family rep 99.7 1.4E-15 3E-20 162.4 21.9 223 265-509 11-274 (365)
65 PRK14962 DNA polymerase III su 99.7 5.5E-16 1.2E-20 171.6 18.8 205 262-507 7-240 (472)
66 PRK14960 DNA polymerase III su 99.7 5.9E-16 1.3E-20 174.3 19.3 203 262-505 8-239 (702)
67 PRK04195 replication factor C 99.7 7.3E-16 1.6E-20 171.5 19.2 209 259-504 4-220 (482)
68 PRK14961 DNA polymerase III su 99.7 1.1E-15 2.5E-20 164.1 19.9 211 262-507 9-242 (363)
69 PRK13342 recombination factor 99.7 2.6E-15 5.7E-20 164.0 22.0 201 264-510 7-220 (413)
70 PRK06645 DNA polymerase III su 99.7 1.3E-15 2.7E-20 169.6 19.3 214 261-506 13-253 (507)
71 PRK14958 DNA polymerase III su 99.7 1.2E-15 2.5E-20 170.4 18.2 204 262-506 9-241 (509)
72 PRK14964 DNA polymerase III su 99.7 1.9E-15 4.2E-20 167.1 19.1 203 262-505 6-237 (491)
73 PRK06893 DNA replication initi 99.7 4.2E-15 9.2E-20 149.9 19.8 211 263-506 10-227 (229)
74 PRK08691 DNA polymerase III su 99.7 1.9E-15 4.2E-20 171.4 19.2 210 262-506 9-241 (709)
75 PRK07994 DNA polymerase III su 99.7 1.9E-15 4.2E-20 171.6 19.2 209 263-506 10-241 (647)
76 PRK14086 dnaA chromosomal repl 99.7 4.1E-15 8.9E-20 167.3 21.4 225 263-511 282-517 (617)
77 PRK00411 cdc6 cell division co 99.7 6.8E-15 1.5E-19 158.8 22.3 223 266-510 27-283 (394)
78 TIGR03420 DnaA_homol_Hda DnaA 99.7 3E-15 6.4E-20 149.1 17.7 205 264-506 10-225 (226)
79 PRK14949 DNA polymerase III su 99.7 3.3E-15 7.2E-20 172.6 20.1 194 262-486 9-225 (944)
80 PRK12402 replication factor C 99.6 9.1E-15 2E-19 154.0 20.8 213 258-507 4-247 (337)
81 PRK14963 DNA polymerase III su 99.6 5.8E-15 1.3E-19 164.6 19.8 203 262-506 7-237 (504)
82 TIGR03345 VI_ClpV1 type VI sec 99.6 2.7E-15 5.9E-20 176.5 17.7 217 265-506 183-428 (852)
83 PRK14951 DNA polymerase III su 99.6 4.8E-15 1E-19 168.0 18.5 210 262-506 9-246 (618)
84 PRK12422 chromosomal replicati 99.6 1.6E-14 3.4E-19 159.1 21.7 230 263-511 105-345 (445)
85 PLN03025 replication factor C 99.6 1.2E-14 2.5E-19 153.6 19.5 201 261-504 5-218 (319)
86 PRK13341 recombination factor 99.6 1.7E-14 3.6E-19 166.7 21.7 209 263-509 22-247 (725)
87 PRK14969 DNA polymerase III su 99.6 7.6E-15 1.6E-19 164.8 18.3 210 262-506 9-241 (527)
88 PRK05563 DNA polymerase III su 99.6 9.1E-15 2E-19 165.2 18.8 209 262-505 9-240 (559)
89 PHA02544 44 clamp loader, smal 99.6 1.7E-14 3.6E-19 151.4 19.4 208 258-504 10-226 (316)
90 PRK14087 dnaA chromosomal repl 99.6 2.9E-14 6.3E-19 157.3 21.3 221 265-509 111-348 (450)
91 TIGR02397 dnaX_nterm DNA polym 99.6 1.5E-14 3.3E-19 153.6 18.3 210 262-506 7-239 (355)
92 PRK08903 DnaA regulatory inact 99.6 4.6E-14 1E-18 141.4 20.7 202 263-507 12-224 (227)
93 PRK14952 DNA polymerase III su 99.6 1.4E-14 3E-19 163.7 18.5 210 262-505 6-240 (584)
94 PRK14957 DNA polymerase III su 99.6 1.6E-14 3.5E-19 161.9 18.8 209 263-506 10-241 (546)
95 PRK07764 DNA polymerase III su 99.6 9.5E-15 2.1E-19 170.6 17.6 209 262-504 8-241 (824)
96 PRK10865 protein disaggregatio 99.6 6.3E-15 1.4E-19 173.8 16.3 199 265-488 174-400 (857)
97 PRK05342 clpX ATP-dependent pr 99.6 1.9E-14 4E-19 156.9 18.2 224 266-491 67-380 (412)
98 PRK07940 DNA polymerase III su 99.6 1.6E-14 3.6E-19 156.5 17.2 187 267-478 3-211 (394)
99 PRK14965 DNA polymerase III su 99.6 2.1E-14 4.6E-19 162.8 18.5 209 262-505 9-240 (576)
100 PRK14959 DNA polymerase III su 99.6 2.5E-14 5.5E-19 161.5 18.8 204 262-506 9-241 (624)
101 PRK08084 DNA replication initi 99.6 8.1E-14 1.8E-18 141.2 20.5 206 263-506 16-233 (235)
102 TIGR03346 chaperone_ClpB ATP-d 99.6 2.8E-14 6.2E-19 168.6 18.4 202 265-491 169-398 (852)
103 COG2812 DnaX DNA polymerase II 99.6 2.7E-14 5.8E-19 158.0 16.5 197 262-489 9-228 (515)
104 COG0466 Lon ATP-dependent Lon 99.6 7.5E-15 1.6E-19 164.2 11.8 220 269-508 323-583 (782)
105 PRK09111 DNA polymerase III su 99.6 6.9E-14 1.5E-18 158.7 19.9 211 262-507 17-255 (598)
106 PRK07133 DNA polymerase III su 99.6 4.4E-14 9.5E-19 161.7 18.3 211 261-506 10-240 (725)
107 PRK14970 DNA polymerase III su 99.6 5.9E-14 1.3E-18 150.7 17.5 211 262-507 10-231 (367)
108 PRK14955 DNA polymerase III su 99.6 6.8E-14 1.5E-18 152.2 17.9 214 262-506 9-254 (397)
109 PRK05896 DNA polymerase III su 99.6 6.5E-14 1.4E-18 157.5 18.0 210 261-505 8-240 (605)
110 KOG0989 Replication factor C, 99.6 1.2E-13 2.6E-18 141.9 17.9 196 257-487 24-236 (346)
111 CHL00095 clpC Clp protease ATP 99.6 6.4E-14 1.4E-18 165.0 18.1 201 266-491 176-403 (821)
112 KOG2028 ATPase related to the 99.6 4.7E-14 1E-18 147.3 14.8 224 265-532 134-388 (554)
113 COG0593 DnaA ATPase involved i 99.6 2.4E-13 5.3E-18 146.7 20.9 227 263-514 81-318 (408)
114 PRK06647 DNA polymerase III su 99.6 1.1E-13 2.3E-18 156.3 18.9 210 262-506 9-241 (563)
115 PRK08727 hypothetical protein; 99.6 2.3E-13 5E-18 137.7 19.4 209 263-508 13-230 (233)
116 PTZ00112 origin recognition co 99.6 1.5E-13 3.2E-18 157.2 19.8 216 269-511 755-1008(1164)
117 PRK05642 DNA replication initi 99.6 2E-13 4.4E-18 138.2 18.9 210 263-506 13-232 (234)
118 PRK14953 DNA polymerase III su 99.6 1E-13 2.2E-18 154.1 18.2 210 262-506 9-241 (486)
119 PRK08451 DNA polymerase III su 99.5 1.3E-13 2.9E-18 153.9 18.6 209 262-505 7-238 (535)
120 PF05673 DUF815: Protein of un 99.5 2E-13 4.3E-18 137.9 17.7 191 263-484 21-244 (249)
121 PF00308 Bac_DnaA: Bacterial d 99.5 1.2E-13 2.6E-18 138.7 15.9 202 264-489 3-216 (219)
122 PRK06305 DNA polymerase III su 99.5 1.9E-13 4.2E-18 150.8 18.9 210 262-506 10-243 (451)
123 PRK10787 DNA-binding ATP-depen 99.5 1.2E-13 2.5E-18 161.3 17.2 216 270-506 323-579 (784)
124 PRK06620 hypothetical protein; 99.5 2.1E-13 4.4E-18 136.5 15.7 198 263-506 10-213 (214)
125 TIGR00390 hslU ATP-dependent p 99.5 1.6E-13 3.4E-18 148.1 15.5 175 271-449 14-343 (441)
126 TIGR00382 clpX endopeptidase C 99.5 2.3E-13 4.9E-18 148.0 16.8 224 267-492 74-387 (413)
127 PRK14950 DNA polymerase III su 99.5 4.7E-13 1E-17 152.3 19.9 209 262-505 9-241 (585)
128 PRK05201 hslU ATP-dependent pr 99.5 1.5E-13 3.3E-18 148.4 15.0 175 271-449 17-345 (443)
129 PRK14954 DNA polymerase III su 99.5 3.9E-13 8.4E-18 153.0 19.0 213 263-506 10-254 (620)
130 PRK00440 rfc replication facto 99.5 7.8E-13 1.7E-17 138.1 19.9 207 258-507 6-224 (319)
131 PRK14948 DNA polymerase III su 99.5 3.6E-13 7.9E-18 153.6 18.7 207 262-504 9-240 (620)
132 KOG2004 Mitochondrial ATP-depe 99.5 1.3E-13 2.9E-18 153.6 14.5 162 269-452 411-596 (906)
133 TIGR02640 gas_vesic_GvpN gas v 99.5 7.6E-13 1.6E-17 136.2 18.1 187 303-511 22-259 (262)
134 COG3829 RocR Transcriptional r 99.5 8E-14 1.7E-18 152.7 11.0 217 263-508 239-497 (560)
135 TIGR02903 spore_lon_C ATP-depe 99.5 1.1E-12 2.5E-17 149.8 19.1 214 264-508 149-429 (615)
136 PRK13407 bchI magnesium chelat 99.5 3.9E-13 8.4E-18 142.8 13.3 215 264-510 3-307 (334)
137 COG3604 FhlA Transcriptional r 99.5 4.7E-13 1E-17 145.1 13.7 198 265-489 219-456 (550)
138 PRK14971 DNA polymerase III su 99.4 2.6E-12 5.5E-17 146.7 19.4 209 263-506 11-243 (614)
139 PRK11034 clpA ATP-dependent Cl 99.4 2E-12 4.3E-17 150.3 18.0 164 271-453 460-667 (758)
140 TIGR02639 ClpA ATP-dependent C 99.4 2.1E-12 4.7E-17 150.5 18.3 197 270-486 455-708 (731)
141 CHL00081 chlI Mg-protoporyphyr 99.4 1.1E-12 2.5E-17 139.8 14.5 218 263-511 11-324 (350)
142 COG1474 CDC6 Cdc6-related prot 99.4 7.2E-12 1.6E-16 134.8 20.6 217 268-509 16-265 (366)
143 PRK15424 propionate catabolism 99.4 8.5E-13 1.8E-17 148.1 13.4 211 266-503 216-479 (538)
144 COG2204 AtoC Response regulato 99.4 5.7E-13 1.2E-17 145.8 11.4 208 266-503 138-385 (464)
145 COG1224 TIP49 DNA helicase TIP 99.4 4.3E-12 9.2E-17 132.7 16.6 99 409-510 322-433 (450)
146 PRK09087 hypothetical protein; 99.4 5.6E-12 1.2E-16 127.2 14.9 171 304-509 46-222 (226)
147 TIGR02030 BchI-ChlI magnesium 99.4 6.4E-12 1.4E-16 133.8 15.8 214 267-511 2-311 (337)
148 TIGR02329 propionate_PrpR prop 99.4 3.4E-12 7.5E-17 143.1 14.0 214 265-505 208-466 (526)
149 cd00009 AAA The AAA+ (ATPases 99.4 1.1E-11 2.3E-16 112.0 13.9 120 302-437 19-150 (151)
150 TIGR01650 PD_CobS cobaltochela 99.4 4.7E-12 1E-16 133.4 13.3 206 302-539 64-316 (327)
151 COG2607 Predicted ATPase (AAA+ 99.4 5.1E-11 1.1E-15 119.2 19.1 199 257-485 47-277 (287)
152 TIGR01817 nifA Nif-specific re 99.4 4.2E-12 9E-17 143.2 12.8 211 264-504 191-440 (534)
153 TIGR02442 Cob-chelat-sub cobal 99.3 1E-11 2.2E-16 142.6 15.5 212 267-510 2-305 (633)
154 TIGR03345 VI_ClpV1 type VI sec 99.3 2.2E-11 4.7E-16 143.8 17.7 195 269-486 566-827 (852)
155 PRK09112 DNA polymerase III su 99.3 4.8E-11 1E-15 127.9 17.5 190 264-485 18-244 (351)
156 PRK05022 anaerobic nitric oxid 99.3 1.6E-11 3.5E-16 137.7 13.3 210 267-503 185-437 (509)
157 TIGR02974 phageshock_pspF psp 99.3 2.5E-11 5.4E-16 129.1 13.6 192 271-489 1-233 (329)
158 COG1221 PspF Transcriptional r 99.3 1.5E-11 3.3E-16 132.6 11.8 200 265-491 74-311 (403)
159 PRK11388 DNA-binding transcrip 99.3 1.5E-11 3.2E-16 141.5 12.2 213 265-507 321-569 (638)
160 TIGR03015 pepcterm_ATPase puta 99.3 2.3E-10 5E-15 116.9 19.6 189 304-509 45-266 (269)
161 TIGR00368 Mg chelatase-related 99.3 5.5E-11 1.2E-15 132.6 16.2 209 265-507 188-497 (499)
162 KOG1969 DNA replication checkp 99.3 8.2E-11 1.8E-15 132.0 16.9 209 256-493 258-519 (877)
163 PRK07471 DNA polymerase III su 99.3 9.8E-11 2.1E-15 126.1 17.1 187 263-483 13-240 (365)
164 TIGR00764 lon_rel lon-related 99.3 9.1E-11 2E-15 134.0 17.8 102 407-510 268-392 (608)
165 PRK10865 protein disaggregatio 99.3 8.7E-11 1.9E-15 139.0 18.1 166 268-453 567-780 (857)
166 PRK10820 DNA-binding transcrip 99.3 2.7E-11 5.9E-16 136.2 13.1 209 264-502 199-447 (520)
167 PRK11608 pspF phage shock prot 99.3 2.9E-11 6.3E-16 128.4 12.6 196 267-489 4-240 (326)
168 PHA02244 ATPase-like protein 99.3 1.1E-10 2.5E-15 124.6 17.0 121 303-441 120-263 (383)
169 PF05621 TniB: Bacterial TniB 99.3 2.4E-10 5.2E-15 118.9 18.8 217 270-505 35-285 (302)
170 TIGR03346 chaperone_ClpB ATP-d 99.3 1.3E-10 2.8E-15 137.8 18.2 201 269-488 565-824 (852)
171 COG0542 clpA ATP-binding subun 99.2 2.1E-10 4.5E-15 132.0 19.1 166 265-454 166-348 (786)
172 PRK15429 formate hydrogenlyase 99.2 9.9E-11 2.1E-15 135.8 15.9 199 264-489 371-609 (686)
173 CHL00095 clpC Clp protease ATP 99.2 2E-10 4.4E-15 135.7 18.5 165 269-453 509-733 (821)
174 COG0714 MoxR-like ATPases [Gen 99.2 3.5E-10 7.6E-15 120.1 17.3 128 303-450 44-201 (329)
175 smart00350 MCM minichromosome 99.2 1.4E-10 3.1E-15 130.1 14.6 219 270-509 204-504 (509)
176 PF01078 Mg_chelatase: Magnesi 99.2 2.1E-11 4.6E-16 120.7 6.5 143 267-442 1-205 (206)
177 PRK13531 regulatory ATPase Rav 99.2 5.7E-10 1.2E-14 123.0 18.2 212 270-512 21-286 (498)
178 smart00382 AAA ATPases associa 99.2 9.9E-11 2.1E-15 104.3 9.9 126 302-439 2-147 (148)
179 PRK05564 DNA polymerase III su 99.2 3.1E-10 6.8E-15 119.6 15.1 169 267-472 2-182 (313)
180 TIGR00678 holB DNA polymerase 99.2 2.6E-10 5.6E-15 111.2 13.3 149 300-472 12-183 (188)
181 COG0542 clpA ATP-binding subun 99.2 1.1E-10 2.3E-15 134.3 12.1 161 269-452 491-705 (786)
182 PRK07399 DNA polymerase III su 99.2 5.9E-10 1.3E-14 117.9 15.8 184 267-484 2-224 (314)
183 COG0470 HolB ATPase involved i 99.2 7.4E-10 1.6E-14 115.7 16.2 150 269-449 1-178 (325)
184 PF00158 Sigma54_activat: Sigm 99.1 9.2E-11 2E-15 113.3 8.4 135 271-432 1-156 (168)
185 TIGR00602 rad24 checkpoint pro 99.1 8.5E-10 1.8E-14 125.9 16.9 259 258-542 73-391 (637)
186 KOG0991 Replication factor C, 99.1 6.1E-10 1.3E-14 111.0 13.1 203 259-505 17-233 (333)
187 PF06068 TIP49: TIP49 C-termin 99.1 6E-10 1.3E-14 118.3 13.7 66 267-339 22-89 (398)
188 TIGR02031 BchD-ChlD magnesium 99.1 4E-10 8.6E-15 128.5 13.1 188 303-510 17-259 (589)
189 KOG0741 AAA+-type ATPase [Post 99.1 1.1E-09 2.3E-14 119.5 14.9 154 284-449 526-683 (744)
190 KOG1942 DNA helicase, TBP-inte 99.1 2.6E-09 5.7E-14 109.5 16.8 129 362-510 297-439 (456)
191 PF07728 AAA_5: AAA domain (dy 99.1 6.6E-11 1.4E-15 109.3 4.7 112 304-430 1-139 (139)
192 PRK09862 putative ATP-dependen 99.1 1.8E-09 4E-14 120.3 17.0 210 266-508 188-491 (506)
193 COG0606 Predicted ATPase with 99.1 3.9E-10 8.5E-15 122.6 10.2 210 265-507 175-483 (490)
194 COG1219 ClpX ATP-dependent pro 99.1 4.2E-10 9.1E-15 116.5 9.6 133 268-402 59-203 (408)
195 TIGR02915 PEP_resp_reg putativ 99.1 8.1E-10 1.7E-14 121.4 12.3 207 267-503 137-383 (445)
196 PRK04132 replication factor C 99.1 2.1E-09 4.6E-14 125.7 16.3 170 304-504 566-749 (846)
197 COG1220 HslU ATP-dependent pro 99.1 6.4E-10 1.4E-14 115.9 10.5 82 364-449 253-346 (444)
198 PRK08058 DNA polymerase III su 99.1 3.3E-09 7.2E-14 112.9 16.2 154 267-450 3-180 (329)
199 PRK11331 5-methylcytosine-spec 99.1 1.6E-09 3.4E-14 118.6 13.7 141 268-438 174-357 (459)
200 PRK05707 DNA polymerase III su 99.0 2.8E-09 6E-14 113.4 14.2 160 299-481 19-203 (328)
201 PRK11361 acetoacetate metaboli 99.0 1.6E-09 3.4E-14 119.3 12.6 210 267-506 141-390 (457)
202 PF07724 AAA_2: AAA domain (Cd 99.0 7.3E-10 1.6E-14 107.3 7.5 109 303-418 4-131 (171)
203 PRK10923 glnG nitrogen regulat 99.0 2.2E-09 4.8E-14 118.8 11.2 210 267-506 136-385 (469)
204 PRK15115 response regulator Gl 98.9 4.4E-09 9.4E-14 115.6 11.7 207 270-506 135-381 (444)
205 COG1239 ChlI Mg-chelatase subu 98.9 7.2E-09 1.6E-13 111.4 12.7 214 265-510 13-323 (423)
206 PRK08116 hypothetical protein; 98.9 3.5E-09 7.7E-14 109.6 10.0 123 302-441 114-251 (268)
207 TIGR01818 ntrC nitrogen regula 98.9 6.2E-09 1.3E-13 114.9 12.6 209 268-506 133-381 (463)
208 KOG0990 Replication factor C, 98.9 4.5E-08 9.7E-13 101.9 15.0 219 258-513 30-276 (360)
209 PTZ00111 DNA replication licen 98.9 3.1E-08 6.8E-13 115.8 15.4 156 270-446 451-651 (915)
210 PF13177 DNA_pol3_delta2: DNA 98.8 2.5E-08 5.5E-13 95.6 11.9 135 273-437 1-159 (162)
211 PF14532 Sigma54_activ_2: Sigm 98.8 4.1E-09 8.9E-14 97.9 6.3 107 272-417 1-110 (138)
212 smart00763 AAA_PrkA PrkA AAA d 98.8 2.5E-08 5.5E-13 106.6 12.9 81 267-354 48-141 (361)
213 KOG1514 Origin recognition com 98.8 6.3E-08 1.4E-12 109.1 16.5 194 304-512 424-658 (767)
214 PRK12377 putative replication 98.8 3E-08 6.6E-13 101.6 12.9 100 303-417 102-206 (248)
215 PRK13765 ATP-dependent proteas 98.8 1.9E-08 4.1E-13 115.2 12.3 100 407-508 277-399 (637)
216 PRK10365 transcriptional regul 98.8 1.6E-08 3.4E-13 110.9 10.7 204 270-506 140-386 (441)
217 COG3283 TyrR Transcriptional r 98.8 3.3E-08 7.1E-13 104.0 12.2 199 264-489 199-432 (511)
218 KOG0745 Putative ATP-dependent 98.8 1.5E-08 3.3E-13 108.6 9.2 99 303-401 227-331 (564)
219 PRK07952 DNA replication prote 98.8 5.9E-08 1.3E-12 99.2 12.9 131 265-417 68-205 (244)
220 PRK06964 DNA polymerase III su 98.8 2E-08 4.4E-13 107.3 9.9 134 299-451 18-203 (342)
221 PRK08181 transposase; Validate 98.8 7.6E-08 1.7E-12 99.7 13.6 100 302-417 106-209 (269)
222 PRK06526 transposase; Provisio 98.7 6.9E-08 1.5E-12 99.3 11.7 100 302-417 98-201 (254)
223 PRK06871 DNA polymerase III su 98.7 1.4E-07 3E-12 100.3 14.2 134 300-452 22-179 (325)
224 COG3284 AcoR Transcriptional a 98.7 1.4E-08 3.1E-13 113.5 7.0 185 304-508 338-556 (606)
225 PF07726 AAA_3: ATPase family 98.7 8.7E-09 1.9E-13 94.9 3.7 104 304-430 1-129 (131)
226 KOG2680 DNA helicase TIP49, TB 98.7 2.8E-07 6.2E-12 95.1 15.1 92 417-511 339-431 (454)
227 PRK08769 DNA polymerase III su 98.7 3.3E-07 7.2E-12 97.2 16.2 149 300-472 24-200 (319)
228 PRK08939 primosomal protein Dn 98.7 1.3E-07 2.8E-12 99.9 12.8 132 265-417 123-261 (306)
229 PF01637 Arch_ATPase: Archaeal 98.7 2.1E-07 4.6E-12 91.6 13.4 165 302-479 20-232 (234)
230 PRK07993 DNA polymerase III su 98.7 1.7E-07 3.7E-12 100.0 13.3 155 299-477 21-200 (334)
231 PRK13406 bchD magnesium chelat 98.7 1.8E-07 3.9E-12 106.5 12.8 188 303-510 26-251 (584)
232 KOG2227 Pre-initiation complex 98.6 1.1E-06 2.3E-11 95.7 15.7 221 270-511 151-417 (529)
233 PF03215 Rad17: Rad17 cell cyc 98.6 7.3E-07 1.6E-11 100.3 15.1 210 257-490 7-269 (519)
234 PRK09183 transposase/IS protei 98.6 4E-07 8.7E-12 93.9 11.8 101 302-417 102-206 (259)
235 PRK06835 DNA replication prote 98.6 4.8E-07 1E-11 96.4 12.6 100 303-417 184-289 (329)
236 PF13173 AAA_14: AAA domain 98.6 4.1E-07 9E-12 83.4 10.1 118 303-443 3-126 (128)
237 PRK06090 DNA polymerase III su 98.5 4.3E-07 9.4E-12 96.3 10.9 133 299-450 22-178 (319)
238 COG1484 DnaC DNA replication p 98.5 9.5E-07 2E-11 90.9 12.9 70 302-373 105-179 (254)
239 PRK06921 hypothetical protein; 98.5 9.3E-07 2E-11 91.6 13.0 68 302-372 117-188 (266)
240 PF01695 IstB_IS21: IstB-like 98.5 2.5E-07 5.3E-12 90.3 7.9 100 302-417 47-150 (178)
241 PRK08699 DNA polymerase III su 98.5 4.5E-07 9.9E-12 96.5 10.0 131 300-450 19-183 (325)
242 KOG1051 Chaperone HSP104 and r 98.5 1E-06 2.2E-11 103.3 12.7 131 270-418 563-712 (898)
243 PF13401 AAA_22: AAA domain; P 98.4 1.3E-06 2.8E-11 79.2 8.9 86 302-400 4-113 (131)
244 KOG2035 Replication factor C, 98.4 4E-06 8.6E-11 86.1 12.8 175 262-472 6-220 (351)
245 cd01120 RecA-like_NTPases RecA 98.3 2.8E-06 6.1E-11 78.7 9.7 110 305-418 2-138 (165)
246 PF03969 AFG1_ATPase: AFG1-lik 98.2 7.5E-06 1.6E-10 88.4 12.1 103 299-417 59-168 (362)
247 PF05729 NACHT: NACHT domain 98.2 1.1E-05 2.3E-10 75.5 11.4 140 304-454 2-165 (166)
248 KOG1970 Checkpoint RAD17-RFC c 98.2 2.6E-05 5.7E-10 86.4 15.8 210 258-489 71-320 (634)
249 COG3267 ExeA Type II secretory 98.2 5E-05 1.1E-09 77.5 16.6 186 304-503 53-267 (269)
250 PF00493 MCM: MCM2/3/5 family 98.2 2.3E-07 4.9E-12 99.0 -0.4 218 270-509 25-326 (331)
251 PF00931 NB-ARC: NB-ARC domain 98.1 2.7E-05 5.8E-10 80.2 13.3 174 279-482 3-203 (287)
252 PLN03210 Resistant to P. syrin 98.1 3.3E-05 7.2E-10 95.1 16.2 174 265-473 180-388 (1153)
253 PRK05917 DNA polymerase III su 98.1 5.1E-05 1.1E-09 79.5 15.0 121 300-439 17-154 (290)
254 TIGR02237 recomb_radB DNA repa 98.1 1E-05 2.2E-10 80.0 9.2 114 299-415 9-148 (209)
255 PF12774 AAA_6: Hydrolytic ATP 98.1 2.1E-05 4.6E-10 79.9 11.1 126 303-449 33-177 (231)
256 COG1241 MCM2 Predicted ATPase 98.1 9.6E-06 2.1E-10 93.2 9.1 220 269-510 286-593 (682)
257 PRK07276 DNA polymerase III su 98.0 0.00015 3.3E-09 76.0 15.7 154 300-482 22-198 (290)
258 PF13191 AAA_16: AAA ATPase do 98.0 7E-06 1.5E-10 78.5 5.3 59 271-338 2-63 (185)
259 KOG0478 DNA replication licens 98.0 0.00012 2.6E-09 82.8 15.6 121 303-442 463-616 (804)
260 PF12775 AAA_7: P-loop contain 98.0 1.2E-05 2.6E-10 83.6 7.3 135 303-452 34-193 (272)
261 KOG0480 DNA replication licens 98.0 2.5E-05 5.4E-10 87.7 9.7 219 268-510 344-644 (764)
262 PRK05818 DNA polymerase III su 98.0 0.00012 2.6E-09 75.4 13.9 121 300-439 5-147 (261)
263 PRK11823 DNA repair protein Ra 98.0 4.6E-05 9.9E-10 84.6 11.3 78 299-376 77-171 (446)
264 KOG2170 ATPase of the AAA+ sup 97.9 0.00039 8.5E-09 72.5 16.5 217 271-513 84-323 (344)
265 cd01124 KaiC KaiC is a circadi 97.9 8.3E-05 1.8E-09 71.6 11.0 103 305-418 2-141 (187)
266 cd01121 Sms Sms (bacterial rad 97.9 5.7E-05 1.2E-09 82.0 10.6 78 299-376 79-173 (372)
267 COG1485 Predicted ATPase [Gene 97.9 4.1E-05 8.8E-10 81.3 8.3 129 274-420 30-175 (367)
268 PRK07132 DNA polymerase III su 97.9 0.00022 4.7E-09 75.3 13.8 127 300-450 16-160 (299)
269 KOG2383 Predicted ATPase [Gene 97.9 0.00014 3.1E-09 78.2 12.2 162 299-487 111-298 (467)
270 PF00910 RNA_helicase: RNA hel 97.8 4.7E-05 1E-09 67.9 6.9 23 305-327 1-23 (107)
271 TIGR01618 phage_P_loop phage n 97.8 5.6E-05 1.2E-09 76.3 7.9 24 301-324 11-34 (220)
272 PHA00729 NTP-binding motif con 97.8 4.6E-05 1E-09 77.0 7.1 24 304-327 19-42 (226)
273 PRK09361 radB DNA repair and r 97.8 0.00013 2.8E-09 73.0 10.1 116 298-415 19-160 (225)
274 KOG1968 Replication factor C, 97.7 0.00011 2.4E-09 87.0 10.3 210 258-488 309-535 (871)
275 KOG0482 DNA replication licens 97.7 0.00012 2.6E-09 80.5 9.7 220 270-511 343-640 (721)
276 KOG2228 Origin recognition com 97.7 0.00018 4E-09 75.9 10.2 160 270-452 25-219 (408)
277 TIGR02012 tigrfam_recA protein 97.7 0.00026 5.7E-09 75.3 11.4 117 300-416 53-191 (321)
278 COG1618 Predicted nucleotide k 97.7 0.00017 3.7E-09 69.1 8.5 26 301-326 4-29 (179)
279 PRK08533 flagellar accessory p 97.7 0.00033 7.2E-09 71.0 11.2 76 299-374 21-130 (230)
280 PRK06067 flagellar accessory p 97.7 0.00025 5.4E-09 71.6 10.1 39 298-336 21-62 (234)
281 KOG2543 Origin recognition com 97.6 0.00075 1.6E-08 72.4 13.6 161 269-452 6-193 (438)
282 TIGR02688 conserved hypothetic 97.6 0.0015 3.3E-08 71.5 16.1 78 276-373 194-272 (449)
283 PRK00131 aroK shikimate kinase 97.6 0.00019 4.2E-09 68.0 8.0 34 301-334 3-36 (175)
284 COG1373 Predicted ATPase (AAA+ 97.6 0.0017 3.7E-08 71.3 16.2 123 304-446 39-161 (398)
285 TIGR00416 sms DNA repair prote 97.6 0.00035 7.6E-09 77.8 11.0 77 299-375 91-184 (454)
286 COG4650 RtcR Sigma54-dependent 97.6 0.00032 6.8E-09 72.8 9.7 187 301-510 207-444 (531)
287 PF14516 AAA_35: AAA-like doma 97.6 0.0031 6.6E-08 67.5 17.5 170 304-485 33-243 (331)
288 TIGR02858 spore_III_AA stage I 97.6 0.00016 3.5E-09 75.2 7.6 95 303-418 112-230 (270)
289 PRK08118 topology modulation p 97.6 0.00012 2.6E-09 70.6 6.1 33 304-336 3-35 (167)
290 PF07693 KAP_NTPase: KAP famil 97.6 0.0019 4.1E-08 67.9 15.7 76 360-452 171-263 (325)
291 cd01394 radB RadB. The archaea 97.6 0.00039 8.4E-09 69.2 9.7 116 299-416 16-157 (218)
292 PF13207 AAA_17: AAA domain; P 97.6 6.1E-05 1.3E-09 67.5 3.6 31 305-335 2-32 (121)
293 KOG1051 Chaperone HSP104 and r 97.5 0.00041 8.8E-09 81.9 10.6 163 268-454 185-365 (898)
294 cd00983 recA RecA is a bacter 97.5 0.00044 9.6E-09 73.7 9.9 115 302-416 55-191 (325)
295 KOG0477 DNA replication licens 97.5 0.00028 6E-09 79.3 8.4 224 270-511 450-759 (854)
296 PF05707 Zot: Zonular occluden 97.5 5.2E-05 1.1E-09 74.6 2.4 120 305-439 3-146 (193)
297 cd03283 ABC_MutS-like MutS-lik 97.5 0.0005 1.1E-08 68.2 9.3 103 303-419 26-150 (199)
298 PRK00771 signal recognition pa 97.5 0.0036 7.8E-08 69.4 16.6 191 300-510 93-333 (437)
299 cd00046 DEXDc DEAD-like helica 97.5 0.001 2.2E-08 58.9 10.2 24 303-326 1-24 (144)
300 PRK14722 flhF flagellar biosyn 97.5 0.00033 7.3E-09 75.9 8.3 110 301-425 136-267 (374)
301 PRK10536 hypothetical protein; 97.5 0.00039 8.5E-09 71.6 8.3 22 304-325 76-97 (262)
302 PRK07261 topology modulation p 97.4 0.0002 4.4E-09 69.2 5.6 34 305-338 3-36 (171)
303 PF13671 AAA_33: AAA domain; P 97.4 0.00046 9.9E-09 63.5 7.5 36 305-342 2-37 (143)
304 PRK14532 adenylate kinase; Pro 97.4 0.00025 5.5E-09 68.9 5.7 36 304-341 2-37 (188)
305 PRK12723 flagellar biosynthesi 97.4 0.001 2.3E-08 72.6 10.9 111 301-425 173-307 (388)
306 cd01393 recA_like RecA is a b 97.4 0.00063 1.4E-08 67.9 8.6 116 299-415 16-167 (226)
307 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00087 1.9E-08 67.2 9.6 116 299-415 16-168 (235)
308 cd01128 rho_factor Transcripti 97.3 0.002 4.4E-08 66.3 12.1 26 303-328 17-42 (249)
309 PF06745 KaiC: KaiC; InterPro 97.3 0.0011 2.3E-08 66.5 9.9 97 298-400 15-148 (226)
310 COG5271 MDN1 AAA ATPase contai 97.3 0.00055 1.2E-08 83.3 8.6 133 302-453 1543-1704(4600)
311 PRK06762 hypothetical protein; 97.3 0.00078 1.7E-08 64.1 8.3 40 302-341 2-41 (166)
312 PRK09376 rho transcription ter 97.3 0.00074 1.6E-08 73.4 8.7 72 305-376 172-271 (416)
313 PF06309 Torsin: Torsin; Inte 97.3 0.00097 2.1E-08 61.6 8.2 51 270-326 26-77 (127)
314 cd01131 PilT Pilus retraction 97.3 0.00092 2E-08 66.1 8.6 67 304-370 3-83 (198)
315 cd01122 GP4d_helicase GP4d_hel 97.3 0.0011 2.4E-08 68.2 9.5 38 298-335 26-67 (271)
316 COG4619 ABC-type uncharacteriz 97.3 0.002 4.2E-08 62.5 10.3 25 301-325 28-52 (223)
317 COG1116 TauB ABC-type nitrate/ 97.3 0.00073 1.6E-08 69.0 7.8 22 304-325 31-52 (248)
318 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0024 5.1E-08 64.9 11.6 40 298-337 17-59 (237)
319 PF00437 T2SE: Type II/IV secr 97.3 0.00028 6.1E-09 72.7 4.9 101 262-372 97-208 (270)
320 cd03216 ABC_Carb_Monos_I This 97.2 0.00084 1.8E-08 64.2 7.5 105 301-419 25-144 (163)
321 PRK05973 replicative DNA helic 97.2 0.003 6.6E-08 64.5 11.7 38 299-336 61-101 (237)
322 PF03266 NTPase_1: NTPase; In 97.2 0.00049 1.1E-08 66.6 5.6 23 304-326 1-23 (168)
323 KOG0481 DNA replication licens 97.2 0.00067 1.5E-08 74.8 7.2 26 303-328 365-390 (729)
324 PF13604 AAA_30: AAA domain; P 97.2 0.00068 1.5E-08 67.1 6.7 97 304-416 20-132 (196)
325 PRK14974 cell division protein 97.2 0.0028 6E-08 68.0 11.8 73 301-373 139-234 (336)
326 PRK09354 recA recombinase A; P 97.2 0.002 4.3E-08 69.3 10.6 115 300-414 58-194 (349)
327 PRK15455 PrkA family serine pr 97.2 0.00036 7.7E-09 78.9 5.0 61 266-333 73-135 (644)
328 PRK13948 shikimate kinase; Pro 97.2 0.0014 2.9E-08 64.4 8.4 35 300-334 8-42 (182)
329 cd00984 DnaB_C DnaB helicase C 97.2 0.0023 5E-08 64.5 10.1 38 298-335 9-50 (242)
330 PRK04841 transcriptional regul 97.2 0.0073 1.6E-07 72.2 16.0 155 303-479 33-223 (903)
331 PRK04296 thymidine kinase; Pro 97.2 0.001 2.3E-08 65.4 7.4 70 304-373 4-90 (190)
332 COG0703 AroK Shikimate kinase 97.2 0.0012 2.5E-08 64.2 7.5 32 303-334 3-34 (172)
333 PRK13947 shikimate kinase; Pro 97.2 0.00039 8.4E-09 66.3 4.2 31 304-334 3-33 (171)
334 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0035 7.6E-08 62.9 11.0 112 302-423 29-160 (213)
335 PRK13946 shikimate kinase; Pro 97.1 0.0015 3.3E-08 63.7 8.2 35 301-335 9-43 (184)
336 PRK12339 2-phosphoglycerate ki 97.1 0.0051 1.1E-07 61.1 11.9 30 302-331 3-32 (197)
337 PF06480 FtsH_ext: FtsH Extrac 97.1 0.00015 3.2E-09 63.5 0.7 66 137-202 24-107 (110)
338 PRK03839 putative kinase; Prov 97.1 0.00043 9.4E-09 66.9 3.8 31 304-334 2-32 (180)
339 PRK00625 shikimate kinase; Pro 97.1 0.0005 1.1E-08 66.9 4.1 31 304-334 2-32 (173)
340 KOG3347 Predicted nucleotide k 97.1 0.00089 1.9E-08 63.4 5.5 31 304-334 9-39 (176)
341 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0035 7.5E-08 64.0 10.5 36 305-340 2-40 (249)
342 COG1066 Sms Predicted ATP-depe 97.1 0.0039 8.6E-08 67.7 11.1 96 303-398 94-205 (456)
343 COG3854 SpoIIIAA ncharacterize 97.1 0.0031 6.7E-08 63.9 9.7 70 304-373 139-230 (308)
344 cd00464 SK Shikimate kinase (S 97.1 0.00051 1.1E-08 64.0 3.9 31 304-334 1-31 (154)
345 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0054 1.2E-07 61.4 11.5 39 298-336 12-53 (224)
346 TIGR02782 TrbB_P P-type conjug 97.0 0.00049 1.1E-08 72.6 4.1 69 303-371 133-214 (299)
347 PF00448 SRP54: SRP54-type pro 97.0 0.0026 5.6E-08 63.1 8.9 108 302-421 1-131 (196)
348 PRK12724 flagellar biosynthesi 97.0 0.0079 1.7E-07 66.2 13.3 113 301-425 222-354 (432)
349 cd01130 VirB11-like_ATPase Typ 97.0 0.00075 1.6E-08 66.0 4.9 70 302-371 25-110 (186)
350 TIGR02238 recomb_DMC1 meiotic 97.0 0.0021 4.7E-08 68.2 8.6 114 299-413 93-242 (313)
351 PRK05800 cobU adenosylcobinami 97.0 0.0058 1.3E-07 59.3 10.9 95 304-401 3-114 (170)
352 TIGR02236 recomb_radA DNA repa 97.0 0.0029 6.4E-08 66.7 9.5 116 299-415 92-245 (310)
353 COG4178 ABC-type uncharacteriz 97.0 0.002 4.4E-08 73.4 8.7 26 299-324 416-441 (604)
354 cd00227 CPT Chloramphenicol (C 97.0 0.00078 1.7E-08 65.0 4.7 38 303-340 3-40 (175)
355 PF12780 AAA_8: P-loop contain 97.0 0.0053 1.2E-07 63.9 11.0 171 270-455 9-213 (268)
356 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0069 1.5E-07 60.7 11.6 38 298-335 16-56 (229)
357 PLN02200 adenylate kinase fami 97.0 0.00091 2E-08 68.1 5.2 41 298-340 39-79 (234)
358 PTZ00202 tuzin; Provisional 97.0 0.031 6.7E-07 61.9 17.0 63 265-336 258-320 (550)
359 PRK13808 adenylate kinase; Pro 97.0 0.0021 4.6E-08 68.7 7.9 34 305-340 3-36 (333)
360 PRK04301 radA DNA repair and r 97.0 0.0033 7.1E-08 66.7 9.4 117 298-415 98-251 (317)
361 PRK09519 recA DNA recombinatio 97.0 0.0044 9.5E-08 72.9 11.1 115 299-413 57-193 (790)
362 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0056 1.2E-07 63.2 10.9 39 298-336 32-73 (259)
363 PRK13949 shikimate kinase; Pro 96.9 0.00078 1.7E-08 65.1 4.1 32 303-334 2-33 (169)
364 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00075 1.6E-08 65.1 3.9 34 305-340 2-35 (183)
365 PRK13695 putative NTPase; Prov 96.9 0.0061 1.3E-07 58.7 10.2 23 304-326 2-24 (174)
366 PF10236 DAP3: Mitochondrial r 96.9 0.045 9.8E-07 58.1 17.6 131 350-480 142-308 (309)
367 PHA02624 large T antigen; Prov 96.9 0.0078 1.7E-07 68.6 12.4 119 300-438 429-561 (647)
368 PRK14531 adenylate kinase; Pro 96.9 0.0009 1.9E-08 65.2 4.4 35 303-339 3-37 (183)
369 PRK11889 flhF flagellar biosyn 96.9 0.01 2.2E-07 64.9 12.7 105 301-417 240-364 (436)
370 cd00544 CobU Adenosylcobinamid 96.9 0.0057 1.2E-07 59.3 9.6 107 305-417 2-126 (169)
371 TIGR01420 pilT_fam pilus retra 96.9 0.0015 3.1E-08 70.3 6.0 69 303-371 123-205 (343)
372 cd02020 CMPK Cytidine monophos 96.9 0.00091 2E-08 61.6 3.8 30 305-334 2-31 (147)
373 PRK10416 signal recognition pa 96.9 0.013 2.9E-07 62.4 13.1 74 300-373 112-208 (318)
374 PTZ00088 adenylate kinase 1; P 96.9 0.0011 2.4E-08 67.3 4.7 35 300-334 4-38 (229)
375 PRK06217 hypothetical protein; 96.9 0.00094 2E-08 65.0 4.0 31 304-334 3-33 (183)
376 smart00487 DEXDc DEAD-like hel 96.9 0.0062 1.3E-07 57.4 9.5 23 303-325 25-48 (201)
377 cd03238 ABC_UvrA The excision 96.9 0.0081 1.8E-07 58.6 10.4 103 302-418 21-150 (176)
378 PLN03187 meiotic recombination 96.9 0.0032 7E-08 67.7 8.2 114 299-413 123-272 (344)
379 PTZ00035 Rad51 protein; Provis 96.8 0.0049 1.1E-07 66.2 9.6 115 298-413 114-264 (337)
380 PRK04328 hypothetical protein; 96.8 0.011 2.3E-07 60.8 11.6 38 298-335 19-59 (249)
381 cd02027 APSK Adenosine 5'-phos 96.8 0.004 8.7E-08 58.8 7.8 36 305-340 2-40 (149)
382 cd01428 ADK Adenylate kinase ( 96.8 0.0011 2.3E-08 64.4 3.9 34 305-340 2-35 (194)
383 PLN02674 adenylate kinase 96.8 0.0043 9.3E-08 63.7 8.5 38 302-341 31-68 (244)
384 COG0563 Adk Adenylate kinase a 96.8 0.002 4.3E-08 63.1 5.7 34 304-339 2-35 (178)
385 cd02021 GntK Gluconate kinase 96.8 0.0011 2.3E-08 62.0 3.7 33 305-339 2-34 (150)
386 COG2274 SunT ABC-type bacterio 96.8 0.0041 9E-08 72.8 9.3 67 348-436 614-680 (709)
387 smart00534 MUTSac ATPase domai 96.8 0.0064 1.4E-07 59.4 9.3 19 305-323 2-20 (185)
388 PF09848 DUF2075: Uncharacteri 96.8 0.0042 9.2E-08 66.8 8.7 23 304-326 3-25 (352)
389 PRK13833 conjugal transfer pro 96.8 0.0016 3.4E-08 69.5 5.2 70 302-371 144-225 (323)
390 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0073 1.6E-07 62.6 10.1 94 266-372 57-160 (264)
391 cd03115 SRP The signal recogni 96.8 0.0076 1.7E-07 57.7 9.5 32 305-336 3-37 (173)
392 PRK08154 anaerobic benzoate ca 96.8 0.0044 9.5E-08 65.7 8.4 36 299-334 130-165 (309)
393 PHA02774 E1; Provisional 96.8 0.0043 9.2E-08 70.4 8.5 33 303-335 435-468 (613)
394 PRK04040 adenylate kinase; Pro 96.7 0.0072 1.6E-07 59.5 9.2 31 302-332 2-34 (188)
395 PF01745 IPT: Isopentenyl tran 96.7 0.002 4.2E-08 64.6 5.1 129 305-450 4-137 (233)
396 TIGR01313 therm_gnt_kin carboh 96.7 0.0012 2.5E-08 62.7 3.4 32 305-338 1-32 (163)
397 PRK13900 type IV secretion sys 96.7 0.0023 4.9E-08 68.6 6.0 70 302-371 160-245 (332)
398 PRK13894 conjugal transfer ATP 96.7 0.0015 3.3E-08 69.5 4.7 70 302-371 148-229 (319)
399 PRK10867 signal recognition pa 96.7 0.019 4.2E-07 63.6 13.3 74 300-373 98-195 (433)
400 PF10443 RNA12: RNA12 protein; 96.7 0.042 9.1E-07 60.4 15.6 34 419-454 198-231 (431)
401 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0079 1.7E-07 56.4 8.8 99 301-418 25-128 (144)
402 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0051 1.1E-07 65.5 8.4 114 299-413 93-242 (316)
403 PRK06696 uridine kinase; Valid 96.7 0.0022 4.8E-08 64.4 5.3 39 301-339 21-62 (223)
404 cd03228 ABCC_MRP_Like The MRP 96.7 0.0071 1.5E-07 58.1 8.5 104 301-420 27-158 (171)
405 cd01125 repA Hexameric Replica 96.7 0.0062 1.4E-07 61.7 8.6 21 305-325 4-24 (239)
406 PRK03731 aroL shikimate kinase 96.7 0.0017 3.7E-08 62.0 4.2 32 303-334 3-34 (171)
407 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.0097 2.1E-07 58.7 9.6 20 304-323 30-49 (200)
408 PF05272 VirE: Virulence-assoc 96.7 0.0042 9.1E-08 61.8 7.0 110 298-437 48-168 (198)
409 PF04665 Pox_A32: Poxvirus A32 96.7 0.023 4.9E-07 58.3 12.4 132 301-451 12-169 (241)
410 TIGR02655 circ_KaiC circadian 96.7 0.011 2.4E-07 66.5 11.1 77 299-375 260-367 (484)
411 PRK14530 adenylate kinase; Pro 96.7 0.0017 3.6E-08 64.9 4.1 35 304-340 5-39 (215)
412 PRK06547 hypothetical protein; 96.7 0.0019 4.2E-08 62.7 4.4 33 301-333 14-46 (172)
413 TIGR00064 ftsY signal recognit 96.7 0.02 4.2E-07 59.8 12.1 37 300-336 70-109 (272)
414 TIGR02655 circ_KaiC circadian 96.7 0.013 2.8E-07 65.9 11.6 39 298-336 17-59 (484)
415 PRK05057 aroK shikimate kinase 96.7 0.0019 4.2E-08 62.4 4.4 34 302-335 4-37 (172)
416 cd03246 ABCC_Protease_Secretio 96.7 0.0068 1.5E-07 58.3 8.1 102 303-418 29-157 (173)
417 cd03243 ABC_MutS_homologs The 96.6 0.0057 1.2E-07 60.4 7.8 22 303-324 30-51 (202)
418 TIGR02525 plasmid_TraJ plasmid 96.6 0.0067 1.5E-07 66.0 8.9 69 304-372 151-236 (372)
419 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0048 1E-07 60.3 7.0 102 303-418 26-133 (177)
420 PHA02530 pseT polynucleotide k 96.6 0.0057 1.2E-07 63.8 7.8 39 302-341 2-40 (300)
421 PLN03186 DNA repair protein RA 96.6 0.0072 1.6E-07 65.1 8.6 116 299-415 120-271 (342)
422 PRK06581 DNA polymerase III su 96.6 0.056 1.2E-06 55.5 14.4 135 302-455 15-164 (263)
423 PF13481 AAA_25: AAA domain; P 96.6 0.0057 1.2E-07 59.3 7.1 73 304-376 34-156 (193)
424 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0072 1.6E-07 57.0 7.6 103 303-420 26-143 (157)
425 cd03223 ABCD_peroxisomal_ALDP 96.6 0.013 2.8E-07 56.2 9.4 101 301-418 26-149 (166)
426 PRK14730 coaE dephospho-CoA ki 96.6 0.0065 1.4E-07 60.1 7.5 38 304-343 3-40 (195)
427 TIGR02788 VirB11 P-type DNA tr 96.6 0.0026 5.7E-08 67.3 4.9 72 300-371 142-228 (308)
428 COG2805 PilT Tfp pilus assembl 96.6 0.016 3.4E-07 60.9 10.4 113 302-442 124-251 (353)
429 TIGR01425 SRP54_euk signal rec 96.5 0.03 6.4E-07 62.0 13.0 74 300-373 98-194 (429)
430 COG2874 FlaH Predicted ATPases 96.5 0.017 3.6E-07 58.1 10.0 126 289-426 13-176 (235)
431 TIGR03499 FlhF flagellar biosy 96.5 0.01 2.2E-07 62.1 9.1 37 301-337 193-234 (282)
432 PRK13764 ATPase; Provisional 96.5 0.0031 6.7E-08 72.4 5.5 70 302-372 257-335 (602)
433 PRK14527 adenylate kinase; Pro 96.5 0.0027 5.8E-08 62.1 4.3 38 300-339 4-41 (191)
434 PRK14526 adenylate kinase; Pro 96.5 0.0074 1.6E-07 60.6 7.5 34 304-339 2-35 (211)
435 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0024 5.1E-08 61.5 3.9 34 304-339 5-38 (188)
436 COG1102 Cmk Cytidylate kinase 96.5 0.0021 4.5E-08 61.8 3.3 28 305-332 3-30 (179)
437 COG4088 Predicted nucleotide k 96.5 0.015 3.3E-07 58.1 9.3 22 305-326 4-25 (261)
438 PRK14528 adenylate kinase; Pro 96.5 0.0027 5.8E-08 62.2 4.2 30 304-333 3-32 (186)
439 COG5271 MDN1 AAA ATPase contai 96.5 0.0084 1.8E-07 73.7 8.8 133 304-452 890-1047(4600)
440 PF08423 Rad51: Rad51; InterP 96.5 0.0085 1.8E-07 61.9 7.9 116 305-421 41-192 (256)
441 cd03247 ABCC_cytochrome_bd The 96.5 0.02 4.4E-07 55.3 10.1 105 301-420 27-160 (178)
442 PRK02496 adk adenylate kinase; 96.5 0.0024 5.3E-08 61.9 3.7 30 304-333 3-32 (184)
443 TIGR01351 adk adenylate kinase 96.5 0.0025 5.4E-08 63.4 3.8 33 305-339 2-34 (210)
444 cd03230 ABC_DR_subfamily_A Thi 96.5 0.01 2.3E-07 57.0 8.0 102 303-418 27-156 (173)
445 PF00406 ADK: Adenylate kinase 96.5 0.0062 1.3E-07 57.1 6.3 35 307-343 1-35 (151)
446 PRK13851 type IV secretion sys 96.4 0.0027 5.8E-08 68.4 4.2 72 300-371 160-246 (344)
447 PF06414 Zeta_toxin: Zeta toxi 96.4 0.0091 2E-07 58.9 7.7 41 300-340 13-54 (199)
448 PF05970 PIF1: PIF1-like helic 96.4 0.016 3.5E-07 62.8 10.1 43 275-326 4-46 (364)
449 TIGR00767 rho transcription te 96.4 0.014 3E-07 63.9 9.5 24 304-327 170-193 (415)
450 PLN02199 shikimate kinase 96.4 0.022 4.7E-07 60.1 10.6 32 303-334 103-134 (303)
451 cd03227 ABC_Class2 ABC-type Cl 96.4 0.012 2.5E-07 56.3 8.0 22 302-323 21-42 (162)
452 PF02562 PhoH: PhoH-like prote 96.4 0.0036 7.7E-08 62.7 4.5 23 304-326 21-43 (205)
453 cd03215 ABC_Carb_Monos_II This 96.4 0.017 3.7E-07 56.0 9.2 25 302-326 26-50 (182)
454 PRK09302 circadian clock prote 96.4 0.025 5.5E-07 63.9 11.8 112 298-418 27-178 (509)
455 PRK05703 flhF flagellar biosyn 96.4 0.022 4.8E-07 63.1 11.1 37 302-338 221-262 (424)
456 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0094 2E-07 63.7 7.9 69 303-373 163-243 (325)
457 PRK05541 adenylylsulfate kinas 96.4 0.0086 1.9E-07 57.6 6.9 41 300-340 5-48 (176)
458 cd03214 ABC_Iron-Siderophores_ 96.4 0.022 4.7E-07 55.2 9.8 105 302-419 25-160 (180)
459 PRK00279 adk adenylate kinase; 96.4 0.0032 7E-08 62.8 4.0 29 305-333 3-31 (215)
460 COG1127 Ttg2A ABC-type transpo 96.3 0.007 1.5E-07 61.7 6.2 56 350-418 152-207 (263)
461 TIGR01448 recD_rel helicase, p 96.3 0.01 2.3E-07 69.8 8.6 98 304-418 340-456 (720)
462 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.0096 2.1E-07 61.3 7.3 58 348-419 144-201 (254)
463 PF13238 AAA_18: AAA domain; P 96.3 0.0028 6.2E-08 56.6 3.1 22 305-326 1-22 (129)
464 cd03232 ABC_PDR_domain2 The pl 96.3 0.027 5.9E-07 55.1 10.2 24 302-325 33-56 (192)
465 PRK13541 cytochrome c biogenes 96.3 0.047 1E-06 53.5 11.9 26 301-326 25-50 (195)
466 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.023 5.1E-07 57.5 9.8 103 303-419 32-156 (222)
467 PRK01184 hypothetical protein; 96.3 0.0037 7.9E-08 60.5 3.7 29 304-333 3-31 (184)
468 PRK08099 bifunctional DNA-bind 96.3 0.01 2.2E-07 65.2 7.5 38 302-339 219-256 (399)
469 COG1936 Predicted nucleotide k 96.2 0.0033 7.2E-08 61.0 3.1 30 304-334 2-31 (180)
470 COG2804 PulE Type II secretory 96.2 0.009 2E-07 66.6 6.9 96 264-373 233-339 (500)
471 COG3842 PotA ABC-type spermidi 96.2 0.0053 1.2E-07 66.1 5.0 25 300-324 27-53 (352)
472 TIGR00959 ffh signal recogniti 96.2 0.055 1.2E-06 60.0 13.0 74 300-373 97-194 (428)
473 cd03213 ABCG_EPDR ABCG transpo 96.2 0.036 7.8E-07 54.4 10.5 25 302-326 35-59 (194)
474 KOG3928 Mitochondrial ribosome 96.2 0.18 3.9E-06 55.1 16.4 119 362-483 316-458 (461)
475 PRK04182 cytidylate kinase; Pr 96.2 0.0043 9.3E-08 59.2 3.8 29 304-332 2-30 (180)
476 PF13245 AAA_19: Part of AAA d 96.2 0.0066 1.4E-07 51.1 4.4 31 305-335 13-50 (76)
477 PRK00889 adenylylsulfate kinas 96.2 0.018 4E-07 55.3 8.1 39 302-340 4-45 (175)
478 COG2074 2-phosphoglycerate kin 96.2 0.099 2.1E-06 53.8 13.5 185 299-511 86-283 (299)
479 PRK10263 DNA translocase FtsK; 96.2 0.023 5.1E-07 69.5 10.5 75 363-450 1142-1218(1355)
480 PRK12727 flagellar biosynthesi 96.2 0.02 4.4E-07 64.7 9.4 26 301-326 349-374 (559)
481 PRK12608 transcription termina 96.2 0.041 8.8E-07 59.8 11.4 23 304-326 135-157 (380)
482 PF13521 AAA_28: AAA domain; P 96.2 0.0056 1.2E-07 58.2 4.3 34 305-339 2-35 (163)
483 COG1126 GlnQ ABC-type polar am 96.2 0.022 4.8E-07 57.4 8.6 21 304-324 30-50 (240)
484 PRK13539 cytochrome c biogenes 96.2 0.039 8.5E-07 54.6 10.5 25 302-326 28-52 (207)
485 COG4608 AppF ABC-type oligopep 96.1 0.015 3.3E-07 60.1 7.6 72 303-374 40-140 (268)
486 PRK14529 adenylate kinase; Pro 96.1 0.014 3E-07 59.2 7.2 35 304-340 2-36 (223)
487 TIGR02173 cyt_kin_arch cytidyl 96.1 0.0049 1.1E-07 58.3 3.8 29 305-333 3-31 (171)
488 TIGR02533 type_II_gspE general 96.1 0.011 2.3E-07 66.7 6.9 94 265-372 218-322 (486)
489 TIGR00152 dephospho-CoA kinase 96.1 0.021 4.6E-07 55.6 8.3 37 305-343 2-38 (188)
490 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.0076 1.6E-07 64.7 5.4 82 268-356 59-143 (358)
491 COG2884 FtsE Predicted ATPase 96.1 0.027 5.8E-07 55.8 8.7 57 351-421 145-201 (223)
492 cd03284 ABC_MutS1 MutS1 homolo 96.1 0.024 5.2E-07 57.0 8.7 22 303-324 31-52 (216)
493 KOG0058 Peptide exporter, ABC 96.1 0.026 5.6E-07 65.2 9.8 25 300-324 492-516 (716)
494 PRK11174 cysteine/glutathione 96.1 0.017 3.7E-07 66.1 8.6 26 301-326 375-400 (588)
495 cd03269 ABC_putative_ATPase Th 96.1 0.045 9.8E-07 54.1 10.4 25 302-326 26-50 (210)
496 TIGR03819 heli_sec_ATPase heli 96.1 0.0064 1.4E-07 65.4 4.6 70 302-371 178-263 (340)
497 cd03282 ABC_MSH4_euk MutS4 hom 96.1 0.046 9.9E-07 54.6 10.4 102 303-420 30-154 (204)
498 COG1120 FepC ABC-type cobalami 96.0 0.021 4.5E-07 59.1 8.1 58 348-418 143-200 (258)
499 cd03218 ABC_YhbG The ABC trans 96.0 0.022 4.8E-07 57.1 8.1 24 302-325 26-49 (232)
500 TIGR02868 CydC thiol reductant 96.0 0.043 9.3E-07 62.1 11.3 25 302-326 361-385 (529)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-88 Score=750.71 Aligned_cols=454 Identities=60% Similarity=0.976 Sum_probs=416.4
Q ss_pred cccchHHHHHHHHcCCccEEEEEeCCcEEEEEEeCCceEEEEcCC---ChHHHHHHHhCCceeeeecCCCCcchHHHHHH
Q 007367 141 SQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPN---DPDLIDILAMNGVDISVSEGDSGNGLFSFVGN 217 (606)
Q Consensus 141 ~~~~y~~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (606)
.+++|++|...+..++|++|.+..+...+.++.++|....+..|. ++.+...+..+++.+........+.|+.++..
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSKNTVYLPKGVNDPNLVSFLDSNNITESGFIPEDNSLLASLLST 102 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcceEEeecCCcccHHHHHHHHhcCCcccccCCCcccHHHHHHHH
Confidence 568999999999999999999987766788888888666666653 67899999999987665544444455555554
Q ss_pred HHHHHHHHHHH-HHHHHhhcCCCCCCCCCCCCcccccccccccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhh
Q 007367 218 LLFPFLAFAGL-FFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTA 296 (606)
Q Consensus 218 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~k~~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~ 296 (606)
++|+++++++ ||+++|++.+++| .+ .+.|++++++........++|+|++|.|++|++|.|+|+||++|.+|..
T Consensus 103 -~lp~il~~~~~~~~~~r~~~~g~g---~~-~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~ 177 (596)
T COG0465 103 -WLPFILLIGLGWFFFRRQAQGGGG---GG-AFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQA 177 (596)
T ss_pred -HHHHHHHHHHHHHHHHHHhhcCCC---Cc-ccCCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHh
Confidence 4677766664 4445444333222 12 8899999999988878899999999999999999999999999999999
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhc
Q 007367 297 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQ 376 (606)
Q Consensus 297 lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~ 376 (606)
+|.++|+|+||+||||||||+|||++|+|+++||+++|+++|+++|+|.+++++|++|.+|++++||||||||||+++++
T Consensus 178 lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~ 257 (596)
T COG0465 178 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQ 257 (596)
T ss_pred cccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCC
Q 007367 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA 456 (606)
Q Consensus 377 r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~ 456 (606)
|+.+.+++++++++++||||.+||+|..+.+|+||++||+|+.||+||+||||||++|.++.||..+|++|++.|+++++
T Consensus 258 Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~ 337 (596)
T COG0465 258 RGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP 337 (596)
T ss_pred cCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHH
Q 007367 457 LAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHA 536 (606)
Q Consensus 457 l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEaGhA 536 (606)
+..++|+..+|+.|+||+|+||.|++|+|++.|+++++..|++.|+++|++++++|++++...+++.+++.+||||+|||
T Consensus 338 l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEagha 417 (596)
T COG0465 338 LAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHA 417 (596)
T ss_pred CCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCcEEEeeCCCCCeeEEeccchhhhhccccCHHHHHHHHHHHhhhHHHHHHHhcc
Q 007367 537 LVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRLVNLSFLDA 602 (606)
Q Consensus 537 lv~~ll~~~~~v~~vsi~prg~a~G~~~~~p~e~~~~~~~~t~~~l~~~i~~~lgGr~AE~~~~~~ 602 (606)
++++++++.++++|+||+|||+++|||++.|.++++ ++||++++++|+++||||+|||++||+
T Consensus 418 lv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~---l~sk~~l~~~i~~~lgGRaAEel~~g~ 480 (596)
T COG0465 418 LVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKY---LMSKEELLDRIDVLLGGRAAEELIFGY 480 (596)
T ss_pred HHHHhCCCCcccceeeeccCchhhcchhcCCccccc---cccHHHHHHHHHHHhCCcHhhhhhhcc
Confidence 999999999999999999999999999999998665 799999999999999999999999993
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-82 Score=670.30 Aligned_cols=336 Identities=53% Similarity=0.843 Sum_probs=325.4
Q ss_pred cCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
....+++|+||.|+|++|++|+|+|+||++|.+|..+|.+.|+||||+||||||||+||||+|+|+++||++.++++|-+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
+|+|++++++|++|..|+..+||||||||||+++.+|... ...+..+++||||.+||||..+.+||||++||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 9999999999999999999999999999999999988542 1227889999999999999999999999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~e 500 (606)
|++|.||||||++|.++.||...|.+||+.|+.+..+..++|+..||+-|.||+|+||+|+||.|++.|+..+...+++.
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~ 532 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMK 532 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEeeCCCCCeeEEeccchhhhhccccCHH
Q 007367 501 EISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRS 580 (606)
Q Consensus 501 dl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEaGhAlv~~ll~~~~~v~~vsi~prg~a~G~~~~~p~e~~~~~~~~t~~ 580 (606)
+++.|-+++++|++++...++++.++++||||.|||||+....+..|++|+||+|||.++|.+.++|+.|++ .+||.
T Consensus 533 ~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~---~~Tk~ 609 (752)
T KOG0734|consen 533 HLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRY---SITKA 609 (752)
T ss_pred HHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchh---hHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876 68999
Q ss_pred HHHHHHHHHhhhHHHHHHHhcc
Q 007367 581 YLENQMAVALGGRLVNLSFLDA 602 (606)
Q Consensus 581 ~l~~~i~~~lgGr~AE~~~~~~ 602 (606)
++++++.||||||+|||++||.
T Consensus 610 q~LA~lDV~MGGRvAEELIfG~ 631 (752)
T KOG0734|consen 610 QLLARLDVCMGGRVAEELIFGT 631 (752)
T ss_pred HHHHHHHHhhcchHHHHHhccC
Confidence 9999999999999999999996
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-80 Score=697.24 Aligned_cols=455 Identities=56% Similarity=0.881 Sum_probs=387.0
Q ss_pred CcccchHHHHH-HHHcCCccEEEEEeCCcEEEEEE----eCC----ceEEEEcCCChHHH---HH-HHhCCce----eee
Q 007367 140 GSQWRYSEFLN-AVKKGKVERVRFSKDGSALQLTA----VDG----RRATVIVPNDPDLI---DI-LAMNGVD----ISV 202 (606)
Q Consensus 140 ~~~~~y~~f~~-~~~~~~v~~v~~~~~~~~~~~~~----~~~----~~~~~~~p~~~~~~---~~-l~~~~~~----~~~ 202 (606)
..+++|.+|+. ++++|.|.++.+...-....+.. .++ ..+...+-.-..+. +. -..-+++ +.+
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~v~~F~~kl~~a~~~l~~~~~~~~pV 242 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRSVDNFERKLDEAQRNLGIDTVVRVPV 242 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecccchHHHHHHHHHHHhCCCceeEeee
Confidence 55799999965 79999999998875322222222 122 22222222212222 22 2232332 111
Q ss_pred ecCCCCcchHHHHHHHHHH-HHHHHHHHHHHHhhcC-CCCCCCCCCCCcccccccc--cccccCCCCccccccccchHHH
Q 007367 203 SEGDSGNGLFSFVGNLLFP-FLAFAGLFFLFRRAQG-GPGGPGGLGGPMDFGRSKS--KFQEVPETGVTFADVAGADQAK 278 (606)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~k~--~~~~~~~~~~tf~DI~G~d~~K 278 (606)
.. .... .+..+...++| +++++++|+++|++++ +.++.+|+.+.+.|+.+++ ++....+++++|+||+|++++|
T Consensus 243 ~~-~~~~-~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731|consen 243 TY-ISES-LLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred EE-eecc-hhhhhhhhhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHH
Confidence 11 1112 23334445677 6677778888887764 1233344444456666555 6777778889999999999999
Q ss_pred HHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHH
Q 007367 279 LELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAK 358 (606)
Q Consensus 279 ~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~ 358 (606)
++|.|+|.||++|+.|.++|+++|+|+||+||||||||+||||+|+|+|+||+.+++++|+++++|.++.++|++|..|+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEccccchhhcc-CCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccC
Q 007367 359 SKAPCIVFIDEIDAVGRQR-GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVD 437 (606)
Q Consensus 359 ~~aP~ILfIDEID~L~~~r-~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~ 437 (606)
..+||||||||||+++.+| +.+.+++++++++++||||.+||++....+|+|+++||+++.||++|+||||||++|+++
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 9999999999999999999 445678899999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccc
Q 007367 438 RPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKK 516 (606)
Q Consensus 438 ~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g~e~~ 516 (606)
+||..+|.+|++.|+++.++. +++|+..++.+|+||+|+||.|+||+|++.|+|++...|+..|+++|++|++.|++++
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred CCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcccccc
Confidence 999999999999999999985 7888999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEeeCCCCCeeEEeccchhhhhccccCHHHHHHHHHHHhhhHHHH
Q 007367 517 NAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRLVN 596 (606)
Q Consensus 517 ~~~~s~~~~~~~A~hEaGhAlv~~ll~~~~~v~~vsi~prg~a~G~~~~~p~e~~~~~~~~t~~~l~~~i~~~lgGr~AE 596 (606)
...++.++++.+||||+|||+++|++++.+|+.++||+| |+++||+++.|.++ .++++++|+++||+.|||||||
T Consensus 561 ~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~----~l~sk~ql~~rm~m~LGGRaAE 635 (774)
T KOG0731|consen 561 SRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD----YLLSKEQLFDRMVMALGGRAAE 635 (774)
T ss_pred chhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc----ccccHHHHHHHHHHHhCcchhh
Confidence 999999999999999999999999999999999999999 66999999999987 3799999999999999999999
Q ss_pred HHHhc
Q 007367 597 LSFLD 601 (606)
Q Consensus 597 ~~~~~ 601 (606)
+++||
T Consensus 636 ev~fg 640 (774)
T KOG0731|consen 636 EVVFG 640 (774)
T ss_pred heecC
Confidence 99997
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=6.3e-76 Score=664.36 Aligned_cols=456 Identities=55% Similarity=0.916 Sum_probs=408.7
Q ss_pred cccchHHHHHHHHcCCccEEEEEeCCcE--EEEEEeC-C---ceEEEEcC-CChHHHHHHHhCCceeeeecCCCCcchHH
Q 007367 141 SQWRYSEFLNAVKKGKVERVRFSKDGSA--LQLTAVD-G---RRATVIVP-NDPDLIDILAMNGVDISVSEGDSGNGLFS 213 (606)
Q Consensus 141 ~~~~y~~f~~~~~~~~v~~v~~~~~~~~--~~~~~~~-~---~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 213 (606)
.+++||+|++++++|+|++|.+.++... +....++ | ..+.+.+| .++++.+.|.++||++.+.+....++|+.
T Consensus 50 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 129 (638)
T CHL00176 50 SRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLKSNIVT 129 (638)
T ss_pred ceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCccchHHH
Confidence 3589999999999999999999866532 2222222 2 34556677 58899999999999998866555566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccCCCCccccccccchHHHHHHHHHHHHhcCchh
Q 007367 214 FVGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDK 293 (606)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~k~~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~ 293 (606)
++..+++|+++++++||++.+....+++ .+...+.|++++.++.......++|+||+|++++|+++.++++++++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~ 207 (638)
T CHL00176 130 ILSNLLLPLILIGVLWFFFQRSSNFKGG--PGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPER 207 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC--CcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHHhCHHH
Confidence 8888888999888888776554321111 12245788999888887778889999999999999999999999999999
Q ss_pred hhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccch
Q 007367 294 YTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 294 ~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L 373 (606)
|..+|...|+|+||+||||||||++|+++|+++++||+++++++|.+.+.|.+..+++++|+.++..+||||||||||.+
T Consensus 208 ~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 287 (638)
T CHL00176 208 FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAV 287 (638)
T ss_pred HhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhc
Q 007367 374 GRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 453 (606)
Q Consensus 374 ~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~ 453 (606)
+.+|+.+.++++++.++++++||.+||++..+.+++||++||+++.+|++++||||||++|.+++|+.++|.+||+.|++
T Consensus 288 ~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 288 GRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred hhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 99888777777889999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHH
Q 007367 454 GKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEA 533 (606)
Q Consensus 454 ~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEa 533 (606)
+..+..++++..+++.+.||+++||+++|++|++.+++++...|+.+|+++|+++++.|.+++. ..++.+++++||||+
T Consensus 368 ~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEa 446 (638)
T CHL00176 368 NKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEV 446 (638)
T ss_pred hcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhh
Confidence 8888889999999999999999999999999999999999999999999999999999988764 567888999999999
Q ss_pred HHHHHHhhcCCCCCCCcEEEeeCCCCCeeEEeccchhhhhccccCHHHHHHHHHHHhhhHHHHHHHhcc
Q 007367 534 GHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRLVNLSFLDA 602 (606)
Q Consensus 534 GhAlv~~ll~~~~~v~~vsi~prg~a~G~~~~~p~e~~~~~~~~t~~~l~~~i~~~lgGr~AE~~~~~~ 602 (606)
||||++++++..++|++|||+|||+++||+++.|.++++ .+||++|+++|+++|||||||+++||+
T Consensus 447 GhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~---~~t~~~l~~~i~~~LgGraAE~~~fg~ 512 (638)
T CHL00176 447 GHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQS---LVSRSQILARIVGALGGRAAEEVVFGS 512 (638)
T ss_pred hhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccc---cccHHHHHHHHHHHhhhHHHHHHhcCC
Confidence 999999999999999999999999999999999987754 789999999999999999999999984
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.3e-68 Score=607.13 Aligned_cols=450 Identities=53% Similarity=0.882 Sum_probs=404.5
Q ss_pred ccchHHHHHHHHcCCccEEEEEeCCcEEEEEEeCCceEEEEcC-CChHHHHHHHhCCceeeeecCCCCcchHHHHHHHHH
Q 007367 142 QWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVP-NDPDLIDILAMNGVDISVSEGDSGNGLFSFVGNLLF 220 (606)
Q Consensus 142 ~~~y~~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (606)
.++|+.|.+.+.+|.|.++.+.. .++..+..+++.+..+.| .++.+...|.++++++...+... ..++..+..+++
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~--~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~-~~~~~~i~~~~~ 107 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARING--REINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEE-PSLLASIFISWF 107 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeC--CEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCccc-chHHHHHHHHHH
Confidence 46899999999999999999864 468888888888888877 56789999999999987765433 334445555556
Q ss_pred HHHHHHHHHHHHH-hhcCCCCCCCCCCCCcccccccccccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCC
Q 007367 221 PFLAFAGLFFLFR-RAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA 299 (606)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~k~~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~ 299 (606)
|+++++++|+++. ++.+|+ +.+.+.|+..+..+........+|+|+.|.+.+++++.+++++++.+..|..++.
T Consensus 108 ~~il~ig~~~v~~g~mt~G~-----~~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~ 182 (644)
T PRK10733 108 PMLLLIGVWIFFMRQMQGGG-----GKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGG 182 (644)
T ss_pred HHHHHHHHHHHHHhhhcCCC-----CceeEEeccccccccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCC
Confidence 6666666665554 444321 2346778887777766656678999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGA 379 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~ 379 (606)
..|+|+||+||||||||++++++++++++||+.++++++.+.+.+.+...++++|..++..+||||||||||.++.+|+.
T Consensus 183 ~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~ 262 (644)
T PRK10733 183 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 262 (644)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 007367 380 GLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK 459 (606)
Q Consensus 380 ~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~ 459 (606)
+.++++.+.++++++||.+||++..+.+++||+|||+++.||++++||||||++|.|++||.++|.+||+.|+++.++..
T Consensus 263 ~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~ 342 (644)
T PRK10733 263 GLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP 342 (644)
T ss_pred CCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC
Confidence 77778888999999999999999988999999999999999999999999999999999999999999999999999888
Q ss_pred cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHH
Q 007367 460 DVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVG 539 (606)
Q Consensus 460 dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEaGhAlv~ 539 (606)
++|+..+++.+.||||+||.++|++|+..|++++...|+.+|+++|++++..+++++...+++++++.+||||+||||++
T Consensus 343 ~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~ 422 (644)
T PRK10733 343 DIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIG 422 (644)
T ss_pred cCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888877888999999999999999999
Q ss_pred hhcCCCCCCCcEEEeeCCCCCeeEEeccchhhhhccccCHHHHHHHHHHHhhhHHHHHHHhcc
Q 007367 540 ALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRLVNLSFLDA 602 (606)
Q Consensus 540 ~ll~~~~~v~~vsi~prg~a~G~~~~~p~e~~~~~~~~t~~~l~~~i~~~lgGr~AE~~~~~~ 602 (606)
+++++.+++++|+|+|||.++||+++.|.++++ .+||++|+++|+++|||||||+++||.
T Consensus 423 ~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~---~~~~~~l~~~i~~~lgGraAE~~~~g~ 482 (644)
T PRK10733 423 RLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAI---SASRQKLESQISTLYGGRLAEEIIYGP 482 (644)
T ss_pred HHccCCCceeEEEEeccCCCcceeEECCCcccc---cccHHHHHHHHHHHHhhHHHHHHHhCC
Confidence 999999999999999999999999999988765 589999999999999999999999984
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.8e-65 Score=568.83 Aligned_cols=386 Identities=66% Similarity=1.062 Sum_probs=355.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCCCCCcccccccccccccCCCCccccccccchHHHHHHHHHHHHhc
Q 007367 211 LFSFVGNLLFPFLAFAGLFFLFRR-AQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLK 289 (606)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~k~~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk 289 (606)
|.+++.++..|++++++.|+++++ +.|+ | ++.+.+++++.++.....+.++|+||+|++++|+++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~ 75 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG-G-----GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLK 75 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC-C-----CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHH
Confidence 667777777778888877776554 4432 1 34566788888888877889999999999999999999999999
Q ss_pred CchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEcc
Q 007367 290 NPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDE 369 (606)
Q Consensus 290 ~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDE 369 (606)
+++.|..+|...|+|+||+||||||||++|+++|+++++||+.+++++|.+.+.|.+.+.++++|+.++..+||||||||
T Consensus 76 ~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDE 155 (495)
T TIGR01241 76 NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDE 155 (495)
T ss_pred CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHH
Q 007367 370 IDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQ 449 (606)
Q Consensus 370 ID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~ 449 (606)
||.++.+++.+..+.+++..+++++||.+||++..+.+++||+|||+++.||++++||||||+.|+++.|+.++|.+||+
T Consensus 156 id~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 156 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 235 (495)
T ss_pred hhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHH
Confidence 99999988776666677888999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccccccchhhHHHHHH
Q 007367 450 VHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVA 529 (606)
Q Consensus 450 ~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A 529 (606)
.++++..+..+.++..++..+.|||++||.++|++|+..+.+++...|+.+|+.+|++++..++++....+++++++++|
T Consensus 236 ~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A 315 (495)
T TIGR01241 236 VHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVA 315 (495)
T ss_pred HHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 99998888788899999999999999999999999999999999899999999999999999988877788999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcEEEeeCCCCCeeEEeccchhhhhccccCHHHHHHHHHHHhhhHHHHHHHhccccC
Q 007367 530 YHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRLVNLSFLDAWES 605 (606)
Q Consensus 530 ~hEaGhAlv~~ll~~~~~v~~vsi~prg~a~G~~~~~p~e~~~~~~~~t~~~l~~~i~~~lgGr~AE~~~~~~~~~ 605 (606)
+||+||||++++++...+++++||.|||.++||+++.|.++. ...|+++|+++|+++|||||||+++||+.++
T Consensus 316 ~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~---~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~ 388 (495)
T TIGR01241 316 YHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDK---YLYTKSQLLAQIAVLLGGRAAEEIIFGEVTT 388 (495)
T ss_pred HHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCcccc---ccCCHHHHHHHHHHHhhHHHHHHHHhcCCCC
Confidence 999999999999998899999999999999999999987653 3689999999999999999999999998763
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-57 Score=468.70 Aligned_cols=254 Identities=46% Similarity=0.780 Sum_probs=247.5
Q ss_pred ccCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 260 ~~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
....+.++|+||.|+++++++|+|.|+. |++|+.|..+|+.+|+|||||||||||||+||||+|++.++.|+.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 3456789999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
+.+|.|++++.+|++|..|+.++||||||||||+++.+|-+...+++.+.++++.+||.+||||....+|-||+|||+++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 007367 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS 498 (606)
Q Consensus 419 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It 498 (606)
.|||||+|||||||.|+||+||.+.|.+||+.|.++..+..++||+.|++.++|+||+||+++|.+|.+.|.|+.+..++
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt 381 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVT 381 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 007367 499 KDEISDALERIIAGP 513 (606)
Q Consensus 499 ~edl~~Al~ri~~g~ 513 (606)
++||.+|++++....
T Consensus 382 ~~DF~~Av~KV~~~~ 396 (406)
T COG1222 382 MEDFLKAVEKVVKKK 396 (406)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998654
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.6e-53 Score=499.89 Aligned_cols=295 Identities=20% Similarity=0.278 Sum_probs=256.0
Q ss_pred hhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH------------------------------
Q 007367 293 KYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF------------------------------ 342 (606)
Q Consensus 293 ~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~------------------------------ 342 (606)
.+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 45678999999999999999999999999999999999999999998543
Q ss_pred -------------hhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC---CCC
Q 007367 343 -------------VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---GNS 406 (606)
Q Consensus 343 -------------~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~---~~~ 406 (606)
.+++..+++.+|+.|++.+||||||||||+++.+ +....++++||.+|++.. ...
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~---------ds~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN---------ESNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC---------ccceehHHHHHHHhccccccCCCC
Confidence 2233456999999999999999999999999754 222356899999999863 356
Q ss_pred cEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHH--hcCCCCCCc-ccHHHHHHhCCCCCHHHHHHHHH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVH--SRGKALAKD-VDFEKISRRTPGFTGADLQNLMN 483 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~--l~~~~l~~d-vdl~~La~~t~G~SgaDL~~Lv~ 483 (606)
+|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..+ .++..+..+ +|+..+|+.|.||||+||+++|+
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999998864 445555433 58999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEeeC------C
Q 007367 484 EAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPR------G 557 (606)
Q Consensus 484 eA~~~A~rr~~~~It~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEaGhAlv~~ll~~~~~v~~vsi~pr------g 557 (606)
+|+..|+++++..|+.++++.|++|+++|.+.+.. +..++ .+++||+||||++.+++..+|+++|||+++ |
T Consensus 1852 EAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~ 1928 (2281)
T CHL00206 1852 EALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEG 1928 (2281)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCc
Confidence 99999999999999999999999999999876532 23333 369999999999999999999999999642 4
Q ss_pred CCCeeEEeccchhhhhccccCHHHHHHHHHHHhhhHHHHHHHhcccc
Q 007367 558 QAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRLVNLSFLDAWE 604 (606)
Q Consensus 558 ~a~G~~~~~p~e~~~~~~~~t~~~l~~~i~~~lgGr~AE~~~~~~~~ 604 (606)
.++||+|+.|.+ ..+++.+++.+|++||||||||++||...+
T Consensus 1929 ~~yl~~wyle~~-----~~mkk~tiL~~Il~cLAGraAedlwf~~~~ 1970 (2281)
T CHL00206 1929 DSYLYKWYFELG-----TSMKKLTILLYLLSCSAGSVAQDLWSLPGP 1970 (2281)
T ss_pred ccceeEeecCCc-----ccCCHHHHHHHHHHHhhhhhhhhhccCcch
Confidence 567999999865 379999999999999999999999997654
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-50 Score=443.77 Aligned_cols=325 Identities=36% Similarity=0.596 Sum_probs=269.8
Q ss_pred eEEEEcCCChHHHHHHHhCCceeeeecCC----CCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 007367 178 RATVIVPNDPDLIDILAMNGVDISVSEGD----SGNGLFSFVGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGR 253 (606)
Q Consensus 178 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 253 (606)
...+.+|+.....++|+..+..+...... -....+++++..+..++-.+.+-.+.+.+..-. ...+...-
T Consensus 345 ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~------~A~~~i~p 418 (693)
T KOG0730|consen 345 EVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQ------EALMGIRP 418 (693)
T ss_pred eeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHH------HHHhcCCc
Confidence 34667888777788877655544333110 112345677777666665555433222110000 00000111
Q ss_pred ccccccccCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 254 SKSKFQEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 254 ~k~~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
+..+...++-++++|+||.|++++|++|++.|.| +++|+.|.++|..+|+|||||||||||||++||++|++++.+|++
T Consensus 419 sa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 419 SALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred hhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 1112222556789999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred echhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 007367 333 CAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (606)
Q Consensus 333 vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIa 412 (606)
+.+.++.++|+|++++.++++|++|++.+|||||+||||+++..|+... +...++++++||++|||+....+|+|||
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEe
Confidence 9999999999999999999999999999999999999999999997322 2667899999999999999999999999
Q ss_pred eeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007367 413 ATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 413 aTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
+||+|+.||+||+||||||+.|+|++||.+.|.+||+.++++.++..++|++.|++.|+||||+||.++|++|+..|.++
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--CCCCHHHHHHHHHHHHc
Q 007367 493 DL--KEISKDEISDALERIIA 511 (606)
Q Consensus 493 ~~--~~It~edl~~Al~ri~~ 511 (606)
.. ..|..+||++|+..+..
T Consensus 656 ~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 656 SIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred hcccccccHHHHHHHHHhhcc
Confidence 64 57999999999987643
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-47 Score=414.86 Aligned_cols=245 Identities=44% Similarity=0.752 Sum_probs=230.1
Q ss_pred CCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~ 342 (606)
++++|+||.|+++++.+|...|.+ +++|+.|+.+|+..|.|||||||||||||+||||+|+|+|..|+.+.+.++.++|
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 569999999999999999997776 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccc
Q 007367 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (606)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~ 422 (606)
+|+++..+|.+|..|+..+|||||+||||+|.++|+.+. .....+++||||.+|||+..+.+|.||++||+||.+|+
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDp 662 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDP 662 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccch
Confidence 999999999999999999999999999999999998743 55677899999999999999999999999999999999
Q ss_pred cccCCCccccccccCCCCHHHHHHHHHHHhc--CCCCCCcccHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhCC----
Q 007367 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSR--GKALAKDVDFEKISRRTP--GFTGADLQNLMNEAAILAARRDL---- 494 (606)
Q Consensus 423 aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~--~~~l~~dvdl~~La~~t~--G~SgaDL~~Lv~eA~~~A~rr~~---- 494 (606)
|++||||||+.+++++|+.++|.+||+.+++ +.++..|+|++.|++.+. ||||+||..||++|.+.|.++..
T Consensus 663 AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~ 742 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEID 742 (802)
T ss_pred hhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999 788899999999999877 99999999999999999988631
Q ss_pred ------------CCCCHHHHHHHHHHHHc
Q 007367 495 ------------KEISKDEISDALERIIA 511 (606)
Q Consensus 495 ------------~~It~edl~~Al~ri~~ 511 (606)
..++..||++|+.++..
T Consensus 743 ~~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 743 SSEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred ccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 13677799999998754
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-45 Score=393.33 Aligned_cols=230 Identities=47% Similarity=0.810 Sum_probs=217.6
Q ss_pred ccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 260 EVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 260 ~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
..++++++|+||.|++....+|.+++..+++|+.|..+|..+|+|||||||||||||+||+++|+|+++||+.+++.+++
T Consensus 181 ~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv 260 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV 260 (802)
T ss_pred CCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh
Confidence 35566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCC----CcEEEEEeeC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN----SGVIVLAATN 415 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~----~~ViVIaaTN 415 (606)
+.+.|++++++|++|++|+..+|||+||||||+++++|..+ +.+-.++++.|||..||++... .+|+||+|||
T Consensus 261 SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a---qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733|consen 261 SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA---QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred cccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH---HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC
Confidence 99999999999999999999999999999999999998652 2334557889999999998543 5799999999
Q ss_pred CCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007367 416 RPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 416 ~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
+||.||++|+|+||||+.|.+..|+...|.+||+..+++..+..++|+..||..|+||.|+||..||.+|+..|.+|
T Consensus 338 RPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 338 RPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-44 Score=353.37 Aligned_cols=254 Identities=38% Similarity=0.653 Sum_probs=244.3
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechh
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s 336 (606)
+....++.+++.||.|++-.|++++|.++. |.+.+.|+++|+.+|+|||||||||||||+||+++|+.....|+.+.++
T Consensus 144 l~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgs 223 (408)
T KOG0727|consen 144 LGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 223 (408)
T ss_pred cCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccH
Confidence 334456789999999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 337 EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 337 e~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
+|+.+|.|++...+|++|..|+.++|+||||||||++..+|-+.+.+.+.+.++++-+||+.||||....+|-||.+||+
T Consensus 224 efvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnr 303 (408)
T KOG0727|consen 224 EFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNR 303 (408)
T ss_pred HHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCc
Confidence 99999999999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred CCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q 007367 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKE 496 (606)
Q Consensus 417 p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~ 496 (606)
.+.|||+|+||||.|+.|+||+||..+++-++.....+..+.+++|++.+..+-...|++||..+|++|.+.|.|.++-.
T Consensus 304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryv 383 (408)
T KOG0727|consen 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYV 383 (408)
T ss_pred ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 007367 497 ISKDEISDALERIIA 511 (606)
Q Consensus 497 It~edl~~Al~ri~~ 511 (606)
+...|++++....+.
T Consensus 384 vl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 384 VLQKDFEKAYKTVVK 398 (408)
T ss_pred eeHHHHHHHHHhhcC
Confidence 999999999887764
No 13
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-44 Score=358.83 Aligned_cols=260 Identities=42% Similarity=0.732 Sum_probs=248.0
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechh
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s 336 (606)
++...++.++++||.|+.+.++.|+|+++. +-+|++|..+|+.+|+|||||||||||||++|||+|+..+..|+.+-++
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 344456789999999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 337 EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 337 e~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
+++.+|+|+++..+|++|+.|+..+.||||+||||+++..|-+...+++.+.+++..+|+.++|+|..++++-|+.+||+
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnr 325 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR 325 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCC
Confidence 99999999999999999999999999999999999999988776667888999999999999999999999999999999
Q ss_pred CCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q 007367 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKE 496 (606)
Q Consensus 417 p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~ 496 (606)
|+.|||+|+||||+|+.++|.+||.+.|..|++.|.+......++-++-|++.++.-+|++|+.+|.+|.+.|.+..++.
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~ 405 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV 405 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCcccc
Q 007367 497 ISKDEISDALERIIAGPEKKN 517 (606)
Q Consensus 497 It~edl~~Al~ri~~g~e~~~ 517 (606)
.|..||.+|+++++.|..+.+
T Consensus 406 atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 406 ATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred hhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998866544
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-44 Score=352.65 Aligned_cols=248 Identities=39% Similarity=0.724 Sum_probs=241.1
Q ss_pred CccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHh
Q 007367 265 GVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~ 343 (606)
..+++-|.|.+.+.++++|+++. .++|+.|..+|+..|+|+|||||||||||+||+++|+...+.|+.+++++++..|.
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~i 222 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 222 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHh
Confidence 45788899999999999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcccc
Q 007367 344 GVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSA 423 (606)
Q Consensus 344 G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~a 423 (606)
|++...+|++|-.|+.++|+|||+||||.++..|..+.++++.+.+++..+||+++|+|....++-||.+||+.+.||++
T Consensus 223 gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a 302 (404)
T KOG0728|consen 223 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 302 (404)
T ss_pred hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHh
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 007367 424 LLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (606)
Q Consensus 424 LlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~ 503 (606)
|+||||+|+.|+||+|+.+.|.+||+.|.++.++...+++..+|....|.||+++..+|.+|.++|.|+.+-.+|++||+
T Consensus 303 llrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfe 382 (404)
T KOG0728|consen 303 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 382 (404)
T ss_pred hcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHcC
Q 007367 504 DALERIIAG 512 (606)
Q Consensus 504 ~Al~ri~~g 512 (606)
-|+.++...
T Consensus 383 mav~kvm~k 391 (404)
T KOG0728|consen 383 MAVAKVMQK 391 (404)
T ss_pred HHHHHHHhc
Confidence 999988753
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-44 Score=355.06 Aligned_cols=250 Identities=41% Similarity=0.712 Sum_probs=240.1
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..+.-+++||.|++..+++|.|.+-. +.++++|.++|+++|+|+|+|||||||||++||+.|...+..|+.+.+.+++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 34567899999999999999996664 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
+|.|.+++.+|+.|..|+..+|+||||||+|+++.+|-++...++.+.+++..+||+++|||..+..|-||++||+.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999998887888999999999999999999999999999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~e 500 (606)
||+|+|.||.|+.|+||.|+.+.|.+|++.|.++.....|+++++|++.|.+|+|++.+.+|-+|.+.|.|++...++.+
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~he 403 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHE 403 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 007367 501 EISDALERIIA 511 (606)
Q Consensus 501 dl~~Al~ri~~ 511 (606)
|+.+.+..+..
T Consensus 404 DfmegI~eVqa 414 (424)
T KOG0652|consen 404 DFMEGILEVQA 414 (424)
T ss_pred HHHHHHHHHHH
Confidence 99999877653
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-44 Score=360.82 Aligned_cols=251 Identities=39% Similarity=0.679 Sum_probs=243.1
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
+.+.-+|+||.|++.+.++++|.++. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34567999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
.|.|.+.+.+|++|+-|..++|+|+||||||+++.+|-+..+++..+.++++.+||+++|+|..+..|-||.+||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~e 500 (606)
||+|+||||+|+.|+|++||...++.||..|..+..+..+++++.+...-..+||+||..+|.+|.++|.|..+..++++
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~ 417 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTME 417 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 007367 501 EISDALERIIAG 512 (606)
Q Consensus 501 dl~~Al~ri~~g 512 (606)
||..|.++++..
T Consensus 418 DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 418 DFKKAKEKVLYK 429 (440)
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
No 17
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.5e-43 Score=348.01 Aligned_cols=241 Identities=37% Similarity=0.668 Sum_probs=224.3
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
..++++|+||+|++++|+..+-++.+|++|+.|..+ .|++||+|||||||||++||++|+++.+||+.+.+.+++..
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 346799999999999999999999999999998766 58999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
++|.++.+++++|+.|++.+|||+||||+|+++-.|..+.-.+ ....++|.||.+||++..+.+|+.|++||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765432111 24578999999999999999999999999999999
Q ss_pred ccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHH-HHHHHHHHHHHHhCCCCCCHH
Q 007367 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQ-NLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 422 ~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~-~Lv~eA~~~A~rr~~~~It~e 500 (606)
+++++ ||...|+|.+|+.++|.+|++.+++..++.-+.+++.++..+.|+||+||. .++..|...|..++++.|+.+
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~e 346 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERE 346 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHH
Confidence 99999 999999999999999999999999999999999999999999999999995 688889999999999999999
Q ss_pred HHHHHHHHH
Q 007367 501 EISDALERI 509 (606)
Q Consensus 501 dl~~Al~ri 509 (606)
|++.|+.+.
T Consensus 347 die~al~k~ 355 (368)
T COG1223 347 DIEKALKKE 355 (368)
T ss_pred HHHHHHHhh
Confidence 999999873
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1e-41 Score=368.14 Aligned_cols=251 Identities=37% Similarity=0.644 Sum_probs=237.2
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..+.++|+||+|++.+|++|++.+.+ +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45689999999999999999999885 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
.|.|.+...++++|..++..+||||||||||.++.+|.....+.+.+.+..+.+||.+||++....+++||++||+++.|
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999998876554455567788999999999999888899999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~e 500 (606)
|++++||||||+.|+|+.|+.++|.+||+.++.+.++..++|+..++..+.||||+||.++|++|.+.|.++++..|+.+
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~ 377 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPK 377 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 007367 501 EISDALERIIAG 512 (606)
Q Consensus 501 dl~~Al~ri~~g 512 (606)
||.+|++++..+
T Consensus 378 df~~A~~~v~~~ 389 (398)
T PTZ00454 378 DFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 19
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-42 Score=380.12 Aligned_cols=249 Identities=38% Similarity=0.711 Sum_probs=226.0
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
++-++++|+||.|.+++|.++.+.++. |++|+.|. .|.+...|||||||||||||++|||+|.|+...|+++.+.++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 345689999999999999999999997 99999874 4778888999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--CCCcEEEEEeeCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--GNSGVIVLAATNRP 417 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--~~~~ViVIaaTN~p 417 (606)
+||+|++++++|++|++||..+|||||+||+|.++++||...++ ..-.++++.|||.|||++. ...+|+||+|||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS-GGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS-GGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc-cccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999999875432 3467889999999999997 46689999999999
Q ss_pred CCccccccCCCccccccccCCC-CHHHHHHHHHHHhcCCCCCCcccHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhCCC
Q 007367 418 DVLDSALLRPGRFDRQVTVDRP-DVAGRVKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLK 495 (606)
Q Consensus 418 ~~LD~aLlRpgRFd~~I~v~~P-d~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~-G~SgaDL~~Lv~eA~~~A~rr~~~ 495 (606)
|.|||+|+||||||.-+++.++ |.+.+..+|+...++..++.++|+.++|+.++ .|||+|+-.+|..|.+.|.+|...
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 55678899999999999999999999999986 699999999999999999887311
Q ss_pred -----------------CCCHHHHHHHHHHHHc
Q 007367 496 -----------------EISKDEISDALERIIA 511 (606)
Q Consensus 496 -----------------~It~edl~~Al~ri~~ 511 (606)
.++++||.++.++...
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 3788999999988653
No 20
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-42 Score=354.56 Aligned_cols=243 Identities=37% Similarity=0.631 Sum_probs=221.0
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
.++++|+||+|++++|+-|+|.|-. +..|+.|+.+ .++-+|||++||||||||+||||+|.|++..||.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 4569999999999999999997775 8889887643 4455899999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCC-C---cEEEEEeeCCC
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN-S---GVIVLAATNRP 417 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~-~---~ViVIaaTN~p 417 (606)
|.|++++.+|-+|+.|+..+|++|||||||.|+.+||.. +.++...++-++||.+|||.... . .|+|+|+||.|
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 999999999999999999999999999999999999764 56778889999999999998542 2 38999999999
Q ss_pred CCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCC---
Q 007367 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL--- 494 (606)
Q Consensus 418 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~--- 494 (606)
+.||+||+| ||...|+||+||.+.|..+|+..++...+.++++++.|++.++||||+||.++|++|.+.+.||..
T Consensus 363 WdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~ 440 (491)
T KOG0738|consen 363 WDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGL 440 (491)
T ss_pred cchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred --------------CCCCHHHHHHHHHHHH
Q 007367 495 --------------KEISKDEISDALERII 510 (606)
Q Consensus 495 --------------~~It~edl~~Al~ri~ 510 (606)
..++.+||++|+.++.
T Consensus 441 ~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 441 TPREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred CcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 2367778888887764
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.7e-40 Score=358.65 Aligned_cols=254 Identities=46% Similarity=0.770 Sum_probs=238.3
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..+.++|+||+|+++++++|++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45678999999999999999998886 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
.|.|.+...++.+|+.++..+||||||||+|.++.+++....++..+.++.+.+++.+++++....+++||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999998887655555667788899999999998888899999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~e 500 (606)
|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..++..|.||+++||..+|++|...|.+++...|+.+
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~ 363 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME 363 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcc
Q 007367 501 EISDALERIIAGPEK 515 (606)
Q Consensus 501 dl~~Al~ri~~g~e~ 515 (606)
||.+|++++....+.
T Consensus 364 d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 364 DFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHHhccccc
Confidence 999999998765433
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.9e-40 Score=357.78 Aligned_cols=251 Identities=39% Similarity=0.693 Sum_probs=237.0
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..+..+|+||.|++++++++++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 34568999999999999999999985 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
.|.|.+...++.+|..|+.+.||||||||||.++.+|.....++..+.+.++.+||..+|++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998887655666677788899999999999888889999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~e 500 (606)
|++++||||||+.|+|+.||.++|.+||+.++.+..+..++++..++..+.|||++||.++|++|...|.++++..|+.+
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~ 415 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQA 415 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHH
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 007367 501 EISDALERIIAG 512 (606)
Q Consensus 501 dl~~Al~ri~~g 512 (606)
||.+|++++...
T Consensus 416 D~~~A~~~v~~~ 427 (438)
T PTZ00361 416 DFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHhh
Confidence 999999998653
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-39 Score=356.28 Aligned_cols=246 Identities=48% Similarity=0.781 Sum_probs=230.1
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
...+.++|+|+.|++.+|+.+++.+.+ ++.++.|...|.++|+|+|||||||||||+||+++|.+++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 356789999999999999999999997 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
++|+|++++.++.+|..|++.+||||||||+|.+...|+.+.. ....+++++||.+|+++....+|+||++||+|+.
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 9999999999999999999999999999999999998865322 2236899999999999999999999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCC--CCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC-CCC
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA--LAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD-LKE 496 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~--l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~-~~~ 496 (606)
+|++++||||||+.++|++||.++|.+|++.|+++.. +..++++..+++.+.||+++||..+|.+|...+.++. ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999998544 4678999999999999999999999999999999998 778
Q ss_pred CCHHHHHHHHHHH
Q 007367 497 ISKDEISDALERI 509 (606)
Q Consensus 497 It~edl~~Al~ri 509 (606)
++.+|+.+|+..+
T Consensus 471 ~~~~~~~~a~~~~ 483 (494)
T COG0464 471 VTLDDFLDALKKI 483 (494)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999999884
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-39 Score=352.40 Aligned_cols=229 Identities=44% Similarity=0.743 Sum_probs=218.0
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
...++++|+||.|+.++|+.|++++.| -+.|..|.+.+.+.+.|||||||||||||+||.++|..++..|+.+.+.++.
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 345569999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
++|.|.++..+|++|.+|+..+|||||+||+|.++++||....| -.++++||||.+|||..+-.+|.|+|+|.+|+.
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG---VTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG---VTDRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC---chHHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 99999999999999999999999999999999999999875443 356899999999999999999999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
|||||+||||+|+.++.+.|+..+|.+|++.......++.++|++.+|.+|.||||+||..++..|.+.|+.+
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999899999999999999999999999999999999888765
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.3e-38 Score=368.95 Aligned_cols=246 Identities=45% Similarity=0.773 Sum_probs=228.5
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
.+.++|+||+|++.+|++|++.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.+.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4578999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
|+|+++..++.+|+.|+...||||||||||.+++.|+... .....+..+++||.+||++....+++||+|||+++.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998876432 23356789999999999998888999999999999999
Q ss_pred ccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC--------
Q 007367 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD-------- 493 (606)
Q Consensus 422 ~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~-------- 493 (606)
++++||||||+.|++++||.++|.+||+.+.++..+..++|+..+++.|.||||+||.++|++|+..|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999999899999999999999999999999999999998852
Q ss_pred ----------CCCCCHHHHHHHHHHHH
Q 007367 494 ----------LKEISKDEISDALERII 510 (606)
Q Consensus 494 ----------~~~It~edl~~Al~ri~ 510 (606)
...|+.+||.+|+.++.
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcC
Confidence 12689999999998764
No 26
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1e-37 Score=334.12 Aligned_cols=249 Identities=46% Similarity=0.780 Sum_probs=232.9
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
...+.++|+||+|++++++++++.+.. +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 345678999999999999999998875 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
..+.|.+...++.+|+.++...|+||||||+|.++..+.....++..+.+..+.+++.+++++....++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998877655555566778889999999999877788999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~ 499 (606)
+|++++||||||+.|+|+.|+.++|.+||+.++.+..+..++++..++..+.||+|+||.++|++|...|.++++..|+.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~ 353 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTM 353 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007367 500 DEISDALERI 509 (606)
Q Consensus 500 edl~~Al~ri 509 (606)
+||.+|++++
T Consensus 354 ~d~~~a~~~~ 363 (364)
T TIGR01242 354 DDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.2e-37 Score=343.46 Aligned_cols=245 Identities=30% Similarity=0.471 Sum_probs=215.7
Q ss_pred ccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 260 EVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 260 ~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
+...+..+|+||+|++.+|+.|++....+ ......+|...|+|+|||||||||||++|+++|++++.||+.++++.+.
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~ 296 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF 296 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc
Confidence 34456789999999999999998865543 2345667999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
+.++|+++.+++++|+.++..+||||||||||.++..++.. +......+++++|+..|+. .+.+|+||+|||+++.
T Consensus 297 ~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~ 372 (489)
T CHL00195 297 GGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDL 372 (489)
T ss_pred ccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhh
Confidence 99999999999999999999999999999999997654322 2234567889999999984 4567999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC--CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA--KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEI 497 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~--~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~I 497 (606)
||++++|+||||+.+++++|+.++|.+||+.|+++.... .+.|+..+++.|.||||+||+++|.+|...|..++ ..+
T Consensus 373 Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~l 451 (489)
T CHL00195 373 LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REF 451 (489)
T ss_pred CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCc
Confidence 999999999999999999999999999999999876432 47889999999999999999999999999988776 679
Q ss_pred CHHHHHHHHHHHHc
Q 007367 498 SKDEISDALERIIA 511 (606)
Q Consensus 498 t~edl~~Al~ri~~ 511 (606)
+.+|+..|+.++.+
T Consensus 452 t~~dl~~a~~~~~P 465 (489)
T CHL00195 452 TTDDILLALKQFIP 465 (489)
T ss_pred CHHHHHHHHHhcCC
Confidence 99999999988764
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-39 Score=324.14 Aligned_cols=228 Identities=36% Similarity=0.631 Sum_probs=204.7
Q ss_pred ccCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 260 ~~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
....++++|+||+|++.+|+.|+|.|-. ++.|+.|.. +..+-+|+||||||||||++||+|+|.|++-.|++++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 3567899999999999999999997765 888888753 23345899999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-CCCcEEEEEeeCCC
Q 007367 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRP 417 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-~~~~ViVIaaTN~p 417 (606)
++.|.|++++.++.+|+.|+.++|+||||||||.++..|+. +.++...++-.+||.+|++.. .+.+|+|+++||-|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999988765 345567788889999999985 45689999999999
Q ss_pred CCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC
Q 007367 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (606)
Q Consensus 418 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~ 493 (606)
+.||.+++| ||++.|++|+|+...|..+++.|+...+.. .+.|+..|+++|+||||+||.-+|+.|.+..+|+-
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 999999999 999999999999999999999999775443 56789999999999999999999999988887763
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-38 Score=324.93 Aligned_cols=228 Identities=39% Similarity=0.623 Sum_probs=211.3
Q ss_pred ccCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007367 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALG-AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (606)
Q Consensus 260 ~~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG-~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se 337 (606)
.+.+..++|+||.|++++|++|++.|-. ++.|+.|..-+ .++|+||||+||||||||++|+++|.++|.+|+.++.+.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 3446679999999999999999998886 99999986332 468899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCc--EEEEEeeC
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG--VIVLAATN 415 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~--ViVIaaTN 415 (606)
+.++|.|++.+.++.+|..|.+-+||||||||+|.+...|+ .+.++.....-++|+...||+..+.+ |+|++|||
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999998883 34577777888999999999976655 99999999
Q ss_pred CCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007367 416 RPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 416 ~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
+|..||.|++| |+.++++|++|+.++|.+||+..+++.++..++|+..+|+.|.||||.||.++|..|+...+++
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999998876
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-38 Score=318.74 Aligned_cols=247 Identities=40% Similarity=0.686 Sum_probs=235.5
Q ss_pred CCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~ 342 (606)
..++|+++.|.-++..++++.+.. +.+|+.+..+|+++|++++||||||||||++|+++|...|+.|+.++++++.+.+
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 357999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccc
Q 007367 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (606)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~ 422 (606)
.|+.++.+|+.|..|+...|||||+||||+++.++.......+.+.+.+|..|+.+||++.....|-+|+|||+|+.||+
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999998666666788899999999999999999999999999999999999
Q ss_pred cccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 007367 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (606)
Q Consensus 423 aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl 502 (606)
+|+||||.|+.+++|+|+...|..|++.|.........+|.+.+.+..+||+|+|+++.|.||-..+.+..+..+-.+++
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~ 366 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDF 366 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999889999999
Q ss_pred HHHHHHHH
Q 007367 503 SDALERII 510 (606)
Q Consensus 503 ~~Al~ri~ 510 (606)
..++.++.
T Consensus 367 ~k~vrk~~ 374 (388)
T KOG0651|consen 367 MKLVRKQA 374 (388)
T ss_pred HHHHHHHH
Confidence 98887754
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.3e-34 Score=319.48 Aligned_cols=261 Identities=31% Similarity=0.546 Sum_probs=214.4
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------e
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP----------F 330 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p----------f 330 (606)
..+.++|+||+|++++++++++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 45679999999999999999998875 899999999999999999999999999999999999998654 6
Q ss_pred eeechhhHHHHHhhhhhHHHHHHHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCC
Q 007367 331 FSCAASEFVELFVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (606)
Q Consensus 331 i~vs~se~~~~~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~ 406 (606)
+.++++++...|.|+.+..++.+|+.++.. .||||||||+|.++.+|+.+. +++.....+++||.+||++....
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccCC
Confidence 677888899999999999999999998763 699999999999998876432 23344577899999999998888
Q ss_pred cEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcC-CCCCC---------cccHHHHHHh-------
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG-KALAK---------DVDFEKISRR------- 469 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~-~~l~~---------dvdl~~La~~------- 469 (606)
+++||+|||+++.||++++||||||++|+|++|+.++|.+||+.++.. ..+.. ..++..+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999864 23311 1122222222
Q ss_pred ----------------------CCCCCHHHHHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHcCCccccccchhh
Q 007367 470 ----------------------TPGFTGADLQNLMNEAAILAARR----DLKEISKDEISDALERIIAGPEKKNAVVSDE 523 (606)
Q Consensus 470 ----------------------t~G~SgaDL~~Lv~eA~~~A~rr----~~~~It~edl~~Al~ri~~g~e~~~~~~s~~ 523 (606)
+..+||++|+++|.+|...|..+ +...|+.+|+..|+++.....+.....-.++
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~ 492 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNPD 492 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCHH
Confidence 34578999999999998888866 3457889999999888766554443333343
Q ss_pred H
Q 007367 524 K 524 (606)
Q Consensus 524 ~ 524 (606)
+
T Consensus 493 ~ 493 (512)
T TIGR03689 493 D 493 (512)
T ss_pred H
Confidence 3
No 32
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=4.1e-32 Score=285.20 Aligned_cols=262 Identities=19% Similarity=0.221 Sum_probs=195.2
Q ss_pred Ccccccc-ccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH
Q 007367 265 GVTFADV-AGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (606)
Q Consensus 265 ~~tf~DI-~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~ 342 (606)
..+|+++ .|+.-.+.-+.+++-. .|+-- ...|.++|++++||||||||||++|+++|+++|++|+.+++.++.+.|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l--~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFL--ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhh--hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 4567777 5555555555554432 22211 226789999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHc-----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC------------CCC
Q 007367 343 VGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF------------SGN 405 (606)
Q Consensus 343 ~G~~~~~vr~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~------------~~~ 405 (606)
+|++++.+|++|..|+. .+||||||||||+++++++.. ......+.+..+||+.||+. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999975 579999999999999988632 11222333447999998863 335
Q ss_pred CcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCC----CCHHHHHHH
Q 007367 406 SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPG----FTGADLQNL 481 (606)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G----~SgaDL~~L 481 (606)
.+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++.++. ..|+..|+..++| |+|+--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 67999999999999999999999999976 4799999999999999998875 6789999999987 456655566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 007367 482 MNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGAL 541 (606)
Q Consensus 482 v~eA~~~A~rr~~~~It~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEaGhAlv~~l 541 (606)
..++...-..+ +..+.+- ++++...+. ......-...+..+.|.||.|+.+.
T Consensus 344 yd~~v~~~i~~----~g~~~~~---~~l~~~~~~-~p~f~~~~~t~~~l~~~g~~l~~eq 395 (413)
T PLN00020 344 YDDEVRKWIAE----VGVENLG---KKLVNSKKG-PPTFEPPKMTLEKLLEYGNMLVREQ 395 (413)
T ss_pred HHHHHHHHHHH----hhHHHHH---HHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 66554443322 2233322 233322222 2334444555667889999988643
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-32 Score=301.57 Aligned_cols=236 Identities=43% Similarity=0.673 Sum_probs=220.5
Q ss_pred CCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~ 342 (606)
..++ .++.|.......+++++.+ +.++..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++.+++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 8999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHcCC-CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 343 VGVGASRVRDLFEKAKSKA-PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~a-P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
.|++++.+|..|+.|.+.+ |+||||||+|.++++|.... ....++..+|+..||+.....+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~----~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD----DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc----hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 99999999999999886422 235678999999999999889999999999999999
Q ss_pred ccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Q 007367 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501 (606)
Q Consensus 422 ~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~ed 501 (606)
++++| ||||+.+.+..|+..+|.+|++.+.+++++..+.++..++..+.||.|+||..+|.+|...+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999988899999999999999999999999999999887 6777
Q ss_pred HHHHHHHHH
Q 007367 502 ISDALERII 510 (606)
Q Consensus 502 l~~Al~ri~ 510 (606)
+..|...+.
T Consensus 409 ~~~A~~~i~ 417 (693)
T KOG0730|consen 409 FQEALMGIR 417 (693)
T ss_pred HHHHHhcCC
Confidence 777766544
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-33 Score=295.38 Aligned_cols=296 Identities=30% Similarity=0.517 Sum_probs=234.4
Q ss_pred ccCCCCccccc--cccchHHHHH-HHH-HHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-Ceeeec
Q 007367 260 EVPETGVTFAD--VAGADQAKLE-LQE-VVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-PFFSCA 334 (606)
Q Consensus 260 ~~~~~~~tf~D--I~G~d~~K~e-L~e-iv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~-pfi~vs 334 (606)
.+..+...|++ |.|++.--.. .++ ....+-.|+.-.++|.+.-+|+|||||||||||++||.|...++. +--.++
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVN 289 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVN 289 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccC
Confidence 34566788888 4577654433 333 333477889999999999999999999999999999999998864 556689
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHcC--------CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCC
Q 007367 335 ASEFVELFVGVGASRVRDLFEKAKSK--------APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (606)
Q Consensus 335 ~se~~~~~~G~~~~~vr~lF~~A~~~--------aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~ 406 (606)
+.++.++|+|+++.++|++|..|... .=.||++||||+++++||+.. ++....++++||||..|||...-+
T Consensus 290 GPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqLN 368 (744)
T KOG0741|consen 290 GPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQLN 368 (744)
T ss_pred cHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhhh
Confidence 99999999999999999999998641 124999999999999998743 345567899999999999999989
Q ss_pred cEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcC----CCCCCcccHHHHHHhCCCCCHHHHHHHH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG----KALAKDVDFEKISRRTPGFTGADLQNLM 482 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~La~~t~G~SgaDL~~Lv 482 (606)
+|+||+-||+.|.+|+||+|||||.-++++.+||.+.|.+|++.|.++ ..+..|+|+.+||..|..|||++|+.+|
T Consensus 369 NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 369 NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLV 448 (744)
T ss_pred cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999854 4567899999999999999999999999
Q ss_pred HHHHHHHHHhCC---------------CCCCHHHHHHHHHHHHcCCcccc--------ccchhhHHHHHHHHHHHHHHHH
Q 007367 483 NEAAILAARRDL---------------KEISKDEISDALERIIAGPEKKN--------AVVSDEKKKLVAYHEAGHALVG 539 (606)
Q Consensus 483 ~eA~~~A~rr~~---------------~~It~edl~~Al~ri~~g~e~~~--------~~~s~~~~~~~A~hEaGhAlv~ 539 (606)
..|...|..|.. -.|+++||..|++.+.+..-... .-+-..-....-+.+-|.-+++
T Consensus 449 ksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~ 528 (744)
T KOG0741|consen 449 KSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQ 528 (744)
T ss_pred HHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHH
Confidence 999999987632 15899999999997654221100 0000111123445677777777
Q ss_pred hhcCCCCCCCcEEEeeCC
Q 007367 540 ALMPEYDPVAKISIIPRG 557 (606)
Q Consensus 540 ~ll~~~~~v~~vsi~prg 557 (606)
..- ..+....+|+.-.|
T Consensus 529 qvk-~s~~s~lvSvLl~G 545 (744)
T KOG0741|consen 529 QVK-NSERSPLVSVLLEG 545 (744)
T ss_pred Hhh-ccccCcceEEEEec
Confidence 654 33444556666555
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.5e-32 Score=313.17 Aligned_cols=246 Identities=45% Similarity=0.754 Sum_probs=223.3
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
.+.++|+||+|++++++.+++++.+ +++++.|..+|..+|+++|||||||||||++|+++|++++.+|+.+++.++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3578999999999999999999886 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
+.|.....++.+|+.+....|+||||||||.+..+++... ......++++|+..|+++.....++||++||+++.||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999988765421 2233568899999999998888899999999999999
Q ss_pred ccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCC-------
Q 007367 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL------- 494 (606)
Q Consensus 422 ~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~------- 494 (606)
++++|+|||++.+.++.|+.++|.+||+.+.++..+..+.++..+++.+.||+++|+..++++|+..+.++..
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999999998888889999999999999999999999999988876521
Q ss_pred ------------CCCCHHHHHHHHHHHHc
Q 007367 495 ------------KEISKDEISDALERIIA 511 (606)
Q Consensus 495 ------------~~It~edl~~Al~ri~~ 511 (606)
..++.+|+..|+..+..
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccc
Confidence 24678899999886643
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.9e-32 Score=309.90 Aligned_cols=247 Identities=36% Similarity=0.624 Sum_probs=220.7
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechh
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAAS 336 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~s 336 (606)
+..+.|++|+|.+.++.+|+|+|.+ |..|+.|..+++.+|+|+|++||||||||+.|+++|..+ .+.|+.-.+.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4578999999999999999999987 999999999999999999999999999999999999977 4688888999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 337 EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 337 e~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
+..+.|+|+.+..++.+|+.|++..|+|||+||||.+++.|... .......++..||..|||+..++.|+||+|||+
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 99999999999999999999999999999999999999988542 233456788899999999999999999999999
Q ss_pred CCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 007367 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK 495 (606)
Q Consensus 417 p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~ 495 (606)
++.+|++|+||||||+.++|++|+.+.|.+|+..|.++..-. ...-+..|++.+.||-|+||+.+|.+|++.+.++.-.
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 999999999999999999999999999999999998764422 2334688999999999999999999999999987422
Q ss_pred ----------------CCCHHHHHHHHHHHHcC
Q 007367 496 ----------------EISKDEISDALERIIAG 512 (606)
Q Consensus 496 ----------------~It~edl~~Al~ri~~g 512 (606)
.+...||..|+.++...
T Consensus 496 q~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 496 QIYSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred eeecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 36677888888877653
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=278.96 Aligned_cols=225 Identities=36% Similarity=0.565 Sum_probs=199.2
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
..++.|+|++|++.+|+.+.+.+-+ +..++.|..+ ..+++|+||.||||+|||+|++|||.|.+..|+.++++.+.+.
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 4568999999999999999999888 5668877644 2356799999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--CCCcEEEEEeeCCCCC
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--GNSGVIVLAATNRPDV 419 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--~~~~ViVIaaTN~p~~ 419 (606)
|+|++++.+|.+|.-|+...|+|+||||+|.+..+|.. ..++.......++|..+++.. .+++|+||+|||+|+.
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e 302 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWE 302 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchH
Confidence 99999999999999999999999999999999998843 345556678888888888764 4568999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCC-CCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK-ALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~-~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~ 493 (606)
+|++++| ||.+++++++||.+.|..+|+..+.+. ....+.|+..+++.|+||++.||.++|.+|++.-.+..
T Consensus 303 ~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 303 LDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred HHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 9999999 999999999999999999999988766 33356789999999999999999999999987765543
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=3.4e-22 Score=207.99 Aligned_cols=212 Identities=20% Similarity=0.297 Sum_probs=163.4
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCc---eEEEEcCCCChHHHHHHHHHHhc-------CCCeeeechhhH
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK---GCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCAASEF 338 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~---gVLL~GPPGTGKT~LArAIA~e~-------g~pfi~vs~se~ 338 (606)
+|++|++++|+++++++.++...+.+...|...+. ++||+||||||||++|+++|+.+ ..++++++++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 48999999999999999987777777788876653 58999999999999999999875 237999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
...+.|..+..++.+|+++.. +||||||+|.+...++ .++.....++.|+..|+.. ..+++||++++...
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999888888888888754 5999999999965322 1234466788888888853 34578888876432
Q ss_pred -----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHH----h--CCCC-CHHHHHHHHHHH
Q 007367 419 -----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISR----R--TPGF-TGADLQNLMNEA 485 (606)
Q Consensus 419 -----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~----~--t~G~-SgaDL~~Lv~eA 485 (606)
.++|+|.+ ||+.+|+|+.++.+++.+|++.++++....-+.+ ...+.. . ...| ++++++++++++
T Consensus 173 ~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 173 MDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 24689999 9999999999999999999999987654332221 222222 1 1233 489999999998
Q ss_pred HHHHHHh
Q 007367 486 AILAARR 492 (606)
Q Consensus 486 ~~~A~rr 492 (606)
......|
T Consensus 251 ~~~~~~r 257 (287)
T CHL00181 251 RMRQANR 257 (287)
T ss_pred HHHHHHH
Confidence 8776655
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=1e-21 Score=201.49 Aligned_cols=213 Identities=21% Similarity=0.309 Sum_probs=161.9
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCC---ceEEEEcCCCChHHHHHHHHHHhc-------CCCeeeechh
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIP---KGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCAAS 336 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p---~gVLL~GPPGTGKT~LArAIA~e~-------g~pfi~vs~s 336 (606)
.+++++|++++|+++++++.+..........|...+ .++||+||||||||++|+++|+++ ..++++++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467899999999999999998766566566676543 478999999999999999999864 3478999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 337 EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 337 e~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
++...+.|.....++++|+.+.. +||||||+|.|... +..+.....++.|+..|+.. ...+++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccC---CEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 99999999998999999988753 59999999999531 11233456788899998864 344566665543
Q ss_pred CC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHh---------CCCCCHHHHHHH
Q 007367 417 PD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRR---------TPGFTGADLQNL 481 (606)
Q Consensus 417 p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~---------t~G~SgaDL~~L 481 (606)
.+ .+++++.+ ||+..|+|+.++.+++.+|++.++......-+.+ +..++.. ....+++.++|+
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 22 36889998 9999999999999999999999987654432222 3333221 123478999999
Q ss_pred HHHHHHHHHHh
Q 007367 482 MNEAAILAARR 492 (606)
Q Consensus 482 v~eA~~~A~rr 492 (606)
++.|....+.+
T Consensus 231 ~e~a~~~~~~r 241 (261)
T TIGR02881 231 IEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHH
Confidence 99987776554
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=9.2e-22 Score=204.53 Aligned_cols=214 Identities=20% Similarity=0.275 Sum_probs=167.8
Q ss_pred ccc-ccccchHHHHHHHHHHHHhcCchhhhhcCCCC--C-ceEEEEcCCCChHHHHHHHHHHhcC-------CCeeeech
Q 007367 267 TFA-DVAGADQAKLELQEVVDFLKNPDKYTALGAKI--P-KGCLLVGPPGTGKTLLARAVAGEAG-------VPFFSCAA 335 (606)
Q Consensus 267 tf~-DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~--p-~gVLL~GPPGTGKT~LArAIA~e~g-------~pfi~vs~ 335 (606)
.++ +++|++++|+++.+++.++..++.+.+.|... | .++||+||||||||++|+++|+.+. .+|+++++
T Consensus 19 ~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 19 QLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 344 69999999999999999988888888888775 3 4899999999999999999988762 37999999
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 336 SEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 336 se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
+++...+.|.....++.+|+++.. ++|||||+|.+...++ ..+.....++.|+..|+.. ..+++||++++
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~ 168 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGY 168 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCC
Confidence 999998999888888899988754 5999999999854321 1234456778888888843 35678888876
Q ss_pred CC--C---CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHh-------CCCCCHHHHHHHH
Q 007367 416 RP--D---VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRR-------TPGFTGADLQNLM 482 (606)
Q Consensus 416 ~p--~---~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~-------t~G~SgaDL~~Lv 482 (606)
.. + .++++|.+ ||+..|+|+.++.+++.+|++.++++....-+.+ ...+... .+-.++++++|++
T Consensus 169 ~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~v 246 (284)
T TIGR02880 169 KDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAI 246 (284)
T ss_pred cHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 43 2 25799999 9999999999999999999999997754322222 3333333 2334799999999
Q ss_pred HHHHHHHHHh
Q 007367 483 NEAAILAARR 492 (606)
Q Consensus 483 ~eA~~~A~rr 492 (606)
+.+......|
T Consensus 247 e~~~~~~~~r 256 (284)
T TIGR02880 247 DRARLRQANR 256 (284)
T ss_pred HHHHHHHHHH
Confidence 9998777665
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.2e-21 Score=207.40 Aligned_cols=207 Identities=27% Similarity=0.338 Sum_probs=163.3
Q ss_pred ccccccccchHHHHHHHH-HHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhh
Q 007367 266 VTFADVAGADQAKLELQE-VVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~e-iv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G 344 (606)
-+|+-|+=..+.|+++.+ +.+|++..+-|++.|....||.|||||||||||+++-|+|++++..++.++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 899999999999998877 777899999999999999999999999999999999999999999999888765432
Q ss_pred hhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCC---CC-hhHHHHHHHHHHHhccCCCCC--cEEEEEeeCCCC
Q 007367 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG---GN-DEREQTINQLLTEMDGFSGNS--GVIVLAATNRPD 418 (606)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~---~~-~e~~~~Ln~LL~eld~~~~~~--~ViVIaaTN~p~ 418 (606)
. ..++.++...... +||+|++||+-..-++..... .. ....-++..||+.+||+.... --|||.|||+.+
T Consensus 274 -n-~dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -D-SDLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -c-HHHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2 2277777766555 699999999986543322111 11 123468999999999997655 579999999999
Q ss_pred CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCC-CCCcccHHHHHHhCCCCCHHHHHHH
Q 007367 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA-LAKDVDFEKISRRTPGFTGADLQNL 481 (606)
Q Consensus 419 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~-l~~dvdl~~La~~t~G~SgaDL~~L 481 (606)
.|||||+||||.|.+|++...+...-+.++..++.... ..--.++..+...+. .|++|+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHH
Confidence 99999999999999999999999999999999886532 111112344333333 699998554
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.4e-21 Score=176.97 Aligned_cols=130 Identities=46% Similarity=0.735 Sum_probs=116.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCC-CeEEEEccccchhhccCCCCCC
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKA-PCIVFIDEIDAVGRQRGAGLGG 383 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~a-P~ILfIDEID~L~~~r~~~~~~ 383 (606)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+.....++++|++++... ||||||||+|.+.... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 699999999999999999999999999999999998888889999999999999887 9999999999998876 223
Q ss_pred CChhHHHHHHHHHHHhccCCCC-CcEEEEEeeCCCCCccccccCCCccccccccCC
Q 007367 384 GNDEREQTINQLLTEMDGFSGN-SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 438 (606)
Q Consensus 384 ~~~e~~~~Ln~LL~eld~~~~~-~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~ 438 (606)
........++.|+..++..... .+++||++||.++.+++.++| +||+..|++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4667778899999999988665 569999999999999999998 89999998864
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-20 Score=197.18 Aligned_cols=231 Identities=23% Similarity=0.343 Sum_probs=173.0
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhh
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGV 345 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~ 345 (606)
-.|++|+-....+..++.+...-.|.+..+ .+-++||+|||||||||++||-||...|..+-.+.+.+..-. -.+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~----apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~q 426 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQ----APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQ 426 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhccccccc----chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chH
Confidence 459999999999999999887766655432 345789999999999999999999999999988887775431 123
Q ss_pred hhHHHHHHHHHHHcCC-CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccc
Q 007367 346 GASRVRDLFEKAKSKA-PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSAL 424 (606)
Q Consensus 346 ~~~~vr~lF~~A~~~a-P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aL 424 (606)
+...+.++|+-+++.. .-+|||||.|++...|... .-++.....||.||-.-- ....+++++.+||+|..+|.++
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHH
Confidence 4567889999998744 3589999999999887542 234556678888887543 2334688899999999999999
Q ss_pred cCCCccccccccCCCCHHHHHHHHHHHhcCCCCC------------------------C---cccHHHHHHhCCCCCHHH
Q 007367 425 LRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA------------------------K---DVDFEKISRRTPGFTGAD 477 (606)
Q Consensus 425 lRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~------------------------~---dvdl~~La~~t~G~SgaD 477 (606)
-. |||.+|+|++|..++|..+|..++.+..+. . +.-+.+.+..|+||||++
T Consensus 503 ~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 503 ND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred Hh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 99 999999999999999999999887443211 0 011567889999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007367 478 LQNLMNEAAILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 478 L~~Lv~eA~~~A~rr~~~~It~edl~~Al~ 507 (606)
|..|+.-....+.-+....++...+++.++
T Consensus 581 iakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 581 IAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 999987543333333333445555554444
No 44
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.82 E-value=1.8e-20 Score=187.19 Aligned_cols=104 Identities=46% Similarity=0.830 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEeeCCCCCeeEEeccchhhhhcccc
Q 007367 498 SKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLY 577 (606)
Q Consensus 498 t~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEaGhAlv~~ll~~~~~v~~vsi~prg~a~G~~~~~p~e~~~~~~~~ 577 (606)
|++||++|+++++.|++++....++++++++|+||+||||++++++..++|.++||+|||.++||+.+.|.+++. ..
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~---~~ 77 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRY---IR 77 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-S---S-
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcc---cc
Confidence 578999999999999998878899999999999999999999999998999999999999999999999987754 48
Q ss_pred CHHHHHHHHHHHhhhHHHHHHHhc--ccc
Q 007367 578 SRSYLENQMAVALGGRLVNLSFLD--AWE 604 (606)
Q Consensus 578 t~~~l~~~i~~~lgGr~AE~~~~~--~~~ 604 (606)
||++++++|+++|||||||++||| ..+
T Consensus 78 t~~~l~~~i~v~LaGraAEe~~~g~~~~s 106 (213)
T PF01434_consen 78 TRSYLEDRICVLLAGRAAEELFFGEDNVS 106 (213)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSCCS-B
T ss_pred cHHHHHhhHHHHHHHHHHHHhhcCcceec
Confidence 999999999999999999999999 544
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.80 E-value=1.9e-18 Score=182.99 Aligned_cols=216 Identities=24% Similarity=0.312 Sum_probs=162.2
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
...+.+|+|++|+++.++.|..++...+.. ...+.++||+||||||||++|+++|++++..+...++..+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~- 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK- 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-
Confidence 345679999999999999999888754332 134678999999999999999999999999887776653321
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC----------------CC
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----------------GN 405 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~----------------~~ 405 (606)
...+..++... ..++||||||||.+.. ..++.+. ..|+... .-
T Consensus 90 -----~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~---~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 90 -----PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILY---PAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred -----hHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHH---HHHHhcceeeeeccCccccceeecC
Confidence 12233444433 3457999999999832 1222333 3333221 01
Q ss_pred CcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHHHHHHHH
Q 007367 406 SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADLQNLMNE 484 (606)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G~SgaDL~~Lv~e 484 (606)
.++.+|++||++..++++|++ ||...+.++.|+.+++.+|++..+...++.-+ ..+..+++.+.| +++.+.++++.
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHH
Confidence 247889999999999999988 99999999999999999999988876555433 336788888876 67999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH
Q 007367 485 AAILAARRDLKEISKDEISDALERI 509 (606)
Q Consensus 485 A~~~A~rr~~~~It~edl~~Al~ri 509 (606)
+...+..++...|+.+++.++++.+
T Consensus 226 ~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 226 VRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 8888877767789999999999764
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=1.8e-18 Score=172.18 Aligned_cols=190 Identities=27% Similarity=0.377 Sum_probs=128.1
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHh
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~ 343 (606)
.+.+|+|++||++++..++-+++..+... ....++|||||||+|||+||+.||++++.+|...++..+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 45699999999999999988887654321 12357999999999999999999999999999988754321
Q ss_pred hhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-----CC-----------Cc
Q 007367 344 GVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----GN-----------SG 407 (606)
Q Consensus 344 G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-----~~-----------~~ 407 (606)
...+..++..... ..||||||||.+.+ . ....|+..|+.+. +. .+
T Consensus 89 ---~~dl~~il~~l~~--~~ILFIDEIHRlnk-----------~---~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ---AGDLAAILTNLKE--GDILFIDEIHRLNK-----------A---QQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---CHHHHHHHHT--T--T-EEEECTCCC--H-----------H---HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---HHHHHHHHHhcCC--CcEEEEechhhccH-----------H---HHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 2233344444433 46999999999943 2 2334555565431 11 24
Q ss_pred EEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHhCCCCCHHHHHHHHHHH
Q 007367 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQNLMNEA 485 (606)
Q Consensus 408 ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~t~G~SgaDL~~Lv~eA 485 (606)
+.+|+||++...|...|+. ||..+..+..++.++..+|++...+..++.-+.+ ..++|.++.| +++-..++++++
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 7899999999999999999 9999889999999999999998887766653333 6778888876 888777777765
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=8.2e-19 Score=180.25 Aligned_cols=238 Identities=22% Similarity=0.253 Sum_probs=174.6
Q ss_pred cccccccchHHHHHHHHHHHH-hcCchhhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCeeeech
Q 007367 267 TFADVAGADQAKLELQEVVDF-LKNPDKYTALG-AKIPKGCLLVGPPGTGKTLLARAVAGEAG---------VPFFSCAA 335 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG-~~~p~gVLL~GPPGTGKT~LArAIA~e~g---------~pfi~vs~ 335 (606)
-|+.++=-...|++|...+.. +.-.++-..-. +..-+-+||+||||||||+|+|++|+.+. ..++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 355666667788887775543 33222211111 22346799999999999999999999773 46789999
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHc-----CCCeEEEEccccchhhccCCC-CCCCChhHHHHHHHHHHHhccCCCCCcEE
Q 007367 336 SEFVELFVGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAG-LGGGNDEREQTINQLLTEMDGFSGNSGVI 409 (606)
Q Consensus 336 se~~~~~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~-~~~~~~e~~~~Ln~LL~eld~~~~~~~Vi 409 (606)
..+.++|.+++.+.+..+|++... +.-..++|||+++++..|... .+......-+++|.+|.+||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 999999999999999999998764 222356799999999888443 34445567789999999999999999999
Q ss_pred EEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCC---C--CC--------Cccc-----HHHHHHh-C
Q 007367 410 VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK---A--LA--------KDVD-----FEKISRR-T 470 (606)
Q Consensus 410 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~---~--l~--------~dvd-----l~~La~~-t 470 (606)
+++|+|-.+.||.|+.. |-|-+.++.+|+...|.+|++.++... + +. ..+. ...+... +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 999999999999999999999765321 1 10 1111 1223322 5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007367 471 PGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (606)
Q Consensus 471 ~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~r 508 (606)
.|.||+.|+.+=-.|.... -....++.+++..|+-.
T Consensus 378 ~gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHH
Confidence 7999999988755543222 22246888887776543
No 48
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.4e-18 Score=190.59 Aligned_cols=262 Identities=20% Similarity=0.224 Sum_probs=191.6
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC----CCeeeechhhHHHHHhh
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAASEFVELFVG 344 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g----~pfi~vs~se~~~~~~G 344 (606)
.|++-...+|++..+ ....| .-.+.++||+||+|+|||.|+++++.+.. +.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 567777777766654 22222 23356899999999999999999999874 56778999988777677
Q ss_pred hhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH-hccC-CCCCcEEEEEeeCCCCCccc
Q 007367 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE-MDGF-SGNSGVIVLAATNRPDVLDS 422 (606)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e-ld~~-~~~~~ViVIaaTN~p~~LD~ 422 (606)
...+.++.+|..+..++|+||++|++|.|....+. .++......+.++.+|.. ++.+ ..+..+.+|++.+....|++
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 77788999999999999999999999999873222 233344445555666643 3333 34455799999999999999
Q ss_pred cccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh----CCCCC
Q 007367 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR----DLKEI 497 (606)
Q Consensus 423 aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr----~~~~I 497 (606)
.|.+|++|+.++.++.|+..+|.+||+..+.+.... ..-|++-++..|+||...|+..++++|...|..+ +.+.+
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kll 636 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLL 636 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999888765522 2224555999999999999999999998888733 22378
Q ss_pred CHHHHHHHHHHHHcCCccc-cccchh--hHHHHHHHHHHHHHHHHhh
Q 007367 498 SKDEISDALERIIAGPEKK-NAVVSD--EKKKLVAYHEAGHALVGAL 541 (606)
Q Consensus 498 t~edl~~Al~ri~~g~e~~-~~~~s~--~~~~~~A~hEaGhAlv~~l 541 (606)
+.++|.++++...+-.-+. ...-+. .-..+-.+||+-.+|...+
T Consensus 637 tke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i 683 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVI 683 (952)
T ss_pred hHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHH
Confidence 9999999998865421110 000001 1122445777777765544
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.79 E-value=4.4e-18 Score=177.52 Aligned_cols=211 Identities=26% Similarity=0.328 Sum_probs=155.4
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhh
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVG 346 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~ 346 (606)
+|+|++|+++.+++|..++...+.. ...+.+++|+||||||||++|+++|++++.++..+++.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 7999999999999998877643322 134567999999999999999999999998877766543211
Q ss_pred hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC----------------CCCcEEE
Q 007367 347 ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----------------GNSGVIV 410 (606)
Q Consensus 347 ~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~----------------~~~~ViV 410 (606)
...+...+... ..+.+|||||+|.+... .+.. |+..|+... ...++++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~---l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEEL---LYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHH---hhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11222223322 34579999999998421 2222 333333221 1134789
Q ss_pred EEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007367 411 LAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 411 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
|++||++..+++++++ ||...+.++.|+.+++.++++..+....+. .+..+..+++.+.| +++.+.++++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHH
Confidence 9999999999999998 998889999999999999999887654443 23346788888876 6688899999887777
Q ss_pred HHhCCCCCCHHHHHHHHHHH
Q 007367 490 ARRDLKEISKDEISDALERI 509 (606)
Q Consensus 490 ~rr~~~~It~edl~~Al~ri 509 (606)
...+...|+.+++.+++..+
T Consensus 210 ~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHcCCCCcCHHHHHHHHHHh
Confidence 66666789999999999873
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.6e-18 Score=189.83 Aligned_cols=224 Identities=26% Similarity=0.432 Sum_probs=180.0
Q ss_pred HHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcC
Q 007367 281 LQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSK 360 (606)
Q Consensus 281 L~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~ 360 (606)
+.++++.+.-+..-...+...--.+||+|+||||||++++++|.++|.+++.++|.++.....+..+.++..+|.+|+..
T Consensus 410 ~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~ 489 (953)
T KOG0736|consen 410 VLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRC 489 (953)
T ss_pred HHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhc
Confidence 33556655544333333344455799999999999999999999999999999999999888888888999999999999
Q ss_pred CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-CCCcEEEEEeeCCCCCccccccCCCccccccccCCC
Q 007367 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 439 (606)
Q Consensus 361 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~P 439 (606)
.|+|||+-++|.++..+.. +.+-...+.++.++. .|.+. ...+++||++|+..+.|++.+++ -|-..|.++.|
T Consensus 490 ~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~l 563 (953)
T KOG0736|consen 490 SPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPAL 563 (953)
T ss_pred CceEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCC
Confidence 9999999999999844322 233344455555555 33333 45679999999999999999999 78889999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh---C-----------------CCCCCH
Q 007367 440 DVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR---D-----------------LKEISK 499 (606)
Q Consensus 440 d~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr---~-----------------~~~It~ 499 (606)
+.++|.+||+.++....+..++.+..++.+|.||+.+|+..++..+-..+..+ . ...+++
T Consensus 564 se~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~ 643 (953)
T KOG0736|consen 564 SEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTE 643 (953)
T ss_pred CHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecH
Confidence 99999999999999999999999999999999999999999988762222211 1 135899
Q ss_pred HHHHHHHHHHH
Q 007367 500 DEISDALERII 510 (606)
Q Consensus 500 edl~~Al~ri~ 510 (606)
+|+..++++.-
T Consensus 644 edf~kals~~~ 654 (953)
T KOG0736|consen 644 EDFDKALSRLQ 654 (953)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 51
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.78 E-value=6.7e-18 Score=189.54 Aligned_cols=213 Identities=23% Similarity=0.299 Sum_probs=147.6
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCee
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFF 331 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi 331 (606)
...+.+|+|++|++..++.|+..+ . ...+.++||+||||||||++|+++.+++ +.+|+
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 345689999999999988887542 1 1235689999999999999999998642 36899
Q ss_pred eechhhH-------HHHHhhhh-------h---------HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhH
Q 007367 332 SCAASEF-------VELFVGVG-------A---------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDER 388 (606)
Q Consensus 332 ~vs~se~-------~~~~~G~~-------~---------~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~ 388 (606)
.++|... .+...+.. . .....++.++. ..+|||||||.+.. .
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~---gG~L~IdEI~~L~~-----------~- 190 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAH---GGVLFIDEIGELHP-----------V- 190 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccC---CcEEEEechhhCCH-----------H-
Confidence 9998631 11111100 0 00011233332 35999999999932 2
Q ss_pred HHHHHHHHHHhccC---------C-----------------CCCcE-EEEEeeCCCCCccccccCCCccccccccCCCCH
Q 007367 389 EQTINQLLTEMDGF---------S-----------------GNSGV-IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441 (606)
Q Consensus 389 ~~~Ln~LL~eld~~---------~-----------------~~~~V-iVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~ 441 (606)
.++.||..|+.- . -..++ +|++||+.++.+++++++ |+ ..+.++.++.
T Consensus 191 --~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~ 265 (531)
T TIGR02902 191 --QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLD 265 (531)
T ss_pred --HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCH
Confidence 334444443320 0 01123 445666789999999999 77 4788999999
Q ss_pred HHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007367 442 AGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (606)
Q Consensus 442 ~eR~~IL~~~l~~~~l~~-dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~r 508 (606)
+++.+|++..+++.++.- +..++.++..+. +++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 266 eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 266 EEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 999999999987766542 233555665543 79999999999999998888889999999999764
No 52
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.7e-17 Score=183.18 Aligned_cols=219 Identities=46% Similarity=0.743 Sum_probs=197.3
Q ss_pred hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEE
Q 007367 288 LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFI 367 (606)
Q Consensus 288 Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfI 367 (606)
+..++.+..++..+|++++++||||||||+++++++.+ +..++.+++.+....+.+......+.+|..++...|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677788899999999999999999999999999999 76668899999999999999999999999999999999999
Q ss_pred ccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHH
Q 007367 368 DEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKI 447 (606)
Q Consensus 368 DEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~I 447 (606)
||+|.+.+.+.. .........+.+++..|+++.... +++++.||++..+|++++++|||++.+.+..|+...+.+|
T Consensus 83 d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988765 234455678899999999998444 8999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHc
Q 007367 448 LQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD------LKEISKDEISDALERIIA 511 (606)
Q Consensus 448 L~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~------~~~It~edl~~Al~ri~~ 511 (606)
+..+.....+..+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 9999988888778899999999999999999999999999998885 235789999999998754
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=2.2e-17 Score=167.77 Aligned_cols=216 Identities=23% Similarity=0.310 Sum_probs=168.8
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~ 342 (606)
-.+.+|+|.+|++++|+.|+-.+...+... ...-++||+||||.|||+||..+|+|+|+.+-..++..+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 346789999999999999998888654332 34568999999999999999999999999998888765432
Q ss_pred hhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--------C--------CC
Q 007367 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------G--------NS 406 (606)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--------~--------~~ 406 (606)
...+-.++.....+ +||||||||++.+. .++++ .-.|+.|. . -.
T Consensus 91 ----~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-----------vEE~L---YpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 ----PGDLAAILTNLEEG--DVLFIDEIHRLSPA-----------VEEVL---YPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----hhhHHHHHhcCCcC--CeEEEehhhhcChh-----------HHHHh---hhhhhheeEEEEEccCCccceEeccCC
Confidence 22233344444334 69999999999532 23333 33354441 1 12
Q ss_pred cEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHHHHHHHHHHH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADLQNLMNEA 485 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~La~~t~G~SgaDL~~Lv~eA 485 (606)
.+.+|+||.+...|...|+. ||.....+..++.++..+|+....+...+.-+. ...++|++..| +++=..+++++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 47899999999999999999 999999999999999999999888766665333 36788888886 898888999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 486 AILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 486 ~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
...|.-++...|+.+-...|++...
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHhC
Confidence 9999988989999999999988754
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.2e-17 Score=176.49 Aligned_cols=204 Identities=28% Similarity=0.430 Sum_probs=143.0
Q ss_pred CccccccccchHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 265 GVTFADVAGADQAKLE---LQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~e---L~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
+.+|+|++|+++...+ |+++++. . ...+++||||||||||++|+.||+..+.+|..+|+.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~---~---------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv----- 82 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA---G---------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV----- 82 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc---C---------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----
Confidence 5789999999988633 4444432 1 234689999999999999999999999999999873
Q ss_pred HhhhhhHHHHHHHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC-C
Q 007367 342 FVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN-R 416 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN-~ 416 (606)
-.+.+.+|++++.+++. ...||||||||++.+. ....||-.|+ ++.|++|++|. .
T Consensus 83 --~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATTEN 142 (436)
T COG2256 83 --TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATTEN 142 (436)
T ss_pred --cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccCCC
Confidence 34567899999999653 3479999999999543 2344677766 55677776654 4
Q ss_pred CC-CccccccCCCccccccccCCCCHHHHHHHHHHHh--cCCCCC------CcccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007367 417 PD-VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS--RGKALA------KDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (606)
Q Consensus 417 p~-~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l--~~~~l~------~dvdl~~La~~t~G~SgaDL~~Lv~eA~~ 487 (606)
|. .|.++|++ |. +++.+.+.+.++..++++..+ ...++. .+.-.+.++..+.| .++-.-|+++.+..
T Consensus 143 PsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~aLN~LE~~~~ 218 (436)
T COG2256 143 PSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRALNLLELAAL 218 (436)
T ss_pred CCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHHHHHHHHHHH
Confidence 54 79999999 54 578999999999999998743 333333 22235666676665 55555566655544
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHc
Q 007367 488 LAARRDLKEISKDEISDALERIIA 511 (606)
Q Consensus 488 ~A~rr~~~~It~edl~~Al~ri~~ 511 (606)
.+. .+ ..++.+++.+.+.+...
T Consensus 219 ~~~-~~-~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 219 SAE-PD-EVLILELLEEILQRRSA 240 (436)
T ss_pred hcC-CC-cccCHHHHHHHHhhhhh
Confidence 432 22 23457777777766443
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=2.1e-17 Score=192.23 Aligned_cols=223 Identities=21% Similarity=0.312 Sum_probs=161.8
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs 334 (606)
+-++++++|.++....+. ..|... ...++||+||||||||++|+++|.++ +..++.++
T Consensus 178 ~~~l~~~igr~~ei~~~~---~~L~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 178 NGKIDPLIGREDELERTI---QVLCRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCcccCcHHHHHHHH---HHHhcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 457899999998866544 333222 24578999999999999999999987 67789999
Q ss_pred hhhHH--HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 007367 335 ASEFV--ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (606)
Q Consensus 335 ~se~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIa 412 (606)
++.+. ..|.|+.+.+++++|+.+....++||||||||.+.+..... ++... ..+.|+..+. ++.+.+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~---~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD---ASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH---HHHHHHHHHh----CCCeEEEE
Confidence 98887 46888999999999999988789999999999997653211 11111 2233444443 46789999
Q ss_pred eeCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCC----CC-CCcccHHHHHHhCCCCC-----HHH
Q 007367 413 ATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK----AL-AKDVDFEKISRRTPGFT-----GAD 477 (606)
Q Consensus 413 aTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~----~l-~~dvdl~~La~~t~G~S-----gaD 477 (606)
+||..+ .+|++|.| ||+ .|+++.|+.+++.+||+.+.... .+ ..+..+..++..+..|- +.-
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 999743 47999999 996 79999999999999999665431 11 23444666666665543 344
Q ss_pred HHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHc
Q 007367 478 LQNLMNEAAILAARR----DLKEISKDEISDALERIIA 511 (606)
Q Consensus 478 L~~Lv~eA~~~A~rr----~~~~It~edl~~Al~ri~~ 511 (606)
...++++|......+ ....|+.+|+.+++.+...
T Consensus 394 ai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 394 AIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred HHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 456777776543322 2345999999999998753
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=3.2e-17 Score=191.69 Aligned_cols=201 Identities=26% Similarity=0.339 Sum_probs=139.5
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH---------H
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV---------E 340 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~---------~ 340 (606)
|+.|++++|+.+.+.+...+... ......+||+||||||||++|+++|++++.+|+.+++..+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 48899999999988766432111 11223699999999999999999999999999998765432 1
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc-----CC--------CCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG-----FS--------GNSG 407 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~-----~~--------~~~~ 407 (606)
.|.|....++.+.|..+....| ||||||||.+.+... ++ ..+.||..||. |. .-++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----GD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----CC-----HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 3566666777888888876666 899999999974321 11 23455665552 11 1246
Q ss_pred EEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHh-----cCCCCC------CcccHHHHHHh-CCCCCH
Q 007367 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS-----RGKALA------KDVDFEKISRR-TPGFTG 475 (606)
Q Consensus 408 ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l-----~~~~l~------~dvdl~~La~~-t~G~Sg 475 (606)
+++|+|||..+.++++|++ ||+ +|+|+.|+.+++.+|++.++ +..++. .+..+..+++. +..+..
T Consensus 464 v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~ 540 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGV 540 (775)
T ss_pred EEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCC
Confidence 8999999999999999999 995 78999999999999998776 222221 12234555543 334455
Q ss_pred HHHHHHHHHHHHHHH
Q 007367 476 ADLQNLMNEAAILAA 490 (606)
Q Consensus 476 aDL~~Lv~eA~~~A~ 490 (606)
++|+..+...+..++
T Consensus 541 R~l~r~i~~~~~~~~ 555 (775)
T TIGR00763 541 RNLERQIEKICRKAA 555 (775)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666655555444433
No 57
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.72 E-value=2.6e-16 Score=173.53 Aligned_cols=223 Identities=20% Similarity=0.330 Sum_probs=151.9
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se 337 (606)
.+..+|++++..+.....+..+..+..++. ...+.++||||+|||||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 356799996533433333333333333331 123568999999999999999999987 56789999999
Q ss_pred HHHHHhhhhhH-HHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 338 FVELFVGVGAS-RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 338 ~~~~~~G~~~~-~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
|...+...... ....+.+..+ .+++|+|||+|.+..+ +..++.+..++.. .......+||+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~---l~~~~~~iiits~~~ 254 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK---------ERTQEEFFHTFNA---LHEAGKQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC---------HHHHHHHHHHHHH---HHHCCCcEEEECCCC
Confidence 87766544322 2222333332 4679999999998432 1222333333333 322334466666666
Q ss_pred CCC---ccccccCCCccc--cccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 417 PDV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 417 p~~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
|.. +++.|.+ ||. .++.+..||.++|.+|++..+...++. ++..++.|+....| +.++|..+++.....+.
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYAS 331 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence 654 6788888 886 489999999999999999988765443 33346777777765 99999999999887776
Q ss_pred HhCCCCCCHHHHHHHHHHHH
Q 007367 491 RRDLKEISKDEISDALERII 510 (606)
Q Consensus 491 rr~~~~It~edl~~Al~ri~ 510 (606)
..+ ..|+.+.+.+++..+.
T Consensus 332 ~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 332 LTG-KPITLELAKEALKDLL 350 (450)
T ss_pred hhC-CCCCHHHHHHHHHHhh
Confidence 655 5699999999999875
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.9e-16 Score=173.79 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=149.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------eee-
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf-------i~v- 333 (606)
+..+.+|+||+|++.+...|+..+.. .+.+..+||+||+|||||++|+++|+.+++.- ..+
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 45678999999999998887776653 13456789999999999999999999887531 000
Q ss_pred chhhHHHH----------HhhhhhHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVEL----------FVGVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~~----------~~G~~~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|..+... ....+...+|++.+.+. .+...|+||||+|.+. ....|.||..|
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NALLKtL 145 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNALLKTL 145 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHHHHHh
Confidence 11111110 01123445666655554 2345699999999993 24678889988
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL 478 (606)
+. ....+++|.+|+.++.|.+.+++ |+ .++.|..++.++..+.++..+...++. .+..+..|++...| +.|+.
T Consensus 146 EE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdA 219 (484)
T PRK14956 146 EE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDM 219 (484)
T ss_pred hc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHH
Confidence 74 44578888999999999999999 76 468899999998889998887765554 33346667777665 89999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.++++.+...+ ...|+.+++.+.+
T Consensus 220 L~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 220 LSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 99998875432 2357877776543
No 59
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=3.7e-16 Score=171.86 Aligned_cols=225 Identities=15% Similarity=0.236 Sum_probs=151.8
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se 337 (606)
.+..+|++.+--+........+..+..++.. .++++||||+|+|||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4568999987434444444444444444322 3469999999999999999999975 46789999999
Q ss_pred HHHHHhhhh-hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 338 FVELFVGVG-ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 338 ~~~~~~G~~-~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
|...+.... ...+.. |.......+++|+|||+|.+..+ ...+..+..++.. +......+||++.+.
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~---------~~~q~elf~~~n~---l~~~~k~iIitsd~~ 237 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK---------TGVQTELFHTFNE---LHDSGKQIVICSDRE 237 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc---------HHHHHHHHHHHHH---HHHcCCeEEEECCCC
Confidence 877654322 122223 33332335789999999988432 1122223333333 222334566666666
Q ss_pred CCC---ccccccCCCcc--ccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 417 PDV---LDSALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 417 p~~---LD~aLlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
|.. +++.+.+ || ..++.+++||.+.|.+|++..++..++. ++..++.|+....| +.++|+.+++.....+.
T Consensus 238 p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHH
Confidence 664 5677888 65 4588999999999999999888654443 23336777777765 89999999999877776
Q ss_pred HhCCCCCCHHHHHHHHHHHHcC
Q 007367 491 RRDLKEISKDEISDALERIIAG 512 (606)
Q Consensus 491 rr~~~~It~edl~~Al~ri~~g 512 (606)
..+ ..|+.+.+.+++...+..
T Consensus 315 ~~~-~~it~~~a~~~L~~~~~~ 335 (440)
T PRK14088 315 TTG-EEVDLKEAILLLKDFIKP 335 (440)
T ss_pred HhC-CCCCHHHHHHHHHHHhcc
Confidence 655 669999999999887543
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.3e-16 Score=179.28 Aligned_cols=195 Identities=21% Similarity=0.309 Sum_probs=142.9
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------ 329 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p------------ 329 (606)
+..+.+|+||+|++.+++.|++.+..- +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 456789999999999999888777632 346678999999999999999999988761
Q ss_pred eeee-chhhH--------HHH--HhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHH
Q 007367 330 FFSC-AASEF--------VEL--FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (606)
Q Consensus 330 fi~v-s~se~--------~~~--~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~ 394 (606)
.-.+ +|..+ ++. -...+...+|++.+.+.. +...|+||||+|.|.. ...|.
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------~AaNA 143 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------HAFNA 143 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------------HHHHH
Confidence 1111 11111 110 011234567777766542 3457999999999932 46788
Q ss_pred HHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHhCCCC
Q 007367 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGF 473 (606)
Q Consensus 395 LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~La~~t~G~ 473 (606)
||+.|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+.+.++..+. .+..|++...|
T Consensus 144 LLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G- 217 (700)
T PRK12323 144 MLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG- 217 (700)
T ss_pred HHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999985 44567889999999999999999 76 789999999999999998877665554333 35666777665
Q ss_pred CHHHHHHHHHHHHH
Q 007367 474 TGADLQNLMNEAAI 487 (606)
Q Consensus 474 SgaDL~~Lv~eA~~ 487 (606)
+.++..++++.+..
T Consensus 218 s~RdALsLLdQaia 231 (700)
T PRK12323 218 SMRDALSLTDQAIA 231 (700)
T ss_pred CHHHHHHHHHHHHH
Confidence 89999999887754
No 61
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.71 E-value=5.9e-16 Score=168.47 Aligned_cols=223 Identities=23% Similarity=0.369 Sum_probs=150.4
Q ss_pred CCCccccc-cccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechh
Q 007367 263 ETGVTFAD-VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAAS 336 (606)
Q Consensus 263 ~~~~tf~D-I~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~s 336 (606)
.+..+|++ ++|.+. ......+..+..++. .....++||||+|+|||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKSN-RLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCcH-HHHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 34679999 456443 222333333333321 224568999999999999999999876 6789999999
Q ss_pred hHHHHHhhhhh-HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 337 EFVELFVGVGA-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 337 e~~~~~~G~~~-~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
+|...+..... .....+.+..+ .+++|+|||+|.+..+ +..+..+..++..+ ......+||+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~~---~~~~~~iiits~~ 241 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK---------ERTQEEFFHTFNAL---HENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC---------HHHHHHHHHHHHHH---HHCCCCEEEecCC
Confidence 88766543321 12222222232 2579999999998532 12223333333333 2233446666666
Q ss_pred CCCC---ccccccCCCcccc--ccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007367 416 RPDV---LDSALLRPGRFDR--QVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 416 ~p~~---LD~aLlRpgRFd~--~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
.|.. +++.+.+ ||.. .+.++.||.++|.+|++..++..++. ++..++.|++...+ +.++|+.+++.....+
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 6654 5688888 7764 79999999999999999998766554 33346778877764 8999999999988777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHc
Q 007367 490 ARRDLKEISKDEISDALERIIA 511 (606)
Q Consensus 490 ~rr~~~~It~edl~~Al~ri~~ 511 (606)
...+ ..|+.+.+.+++.....
T Consensus 319 ~~~~-~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 319 SLTG-KPITLELAKEALKDLLR 339 (405)
T ss_pred HHhC-CCCCHHHHHHHHHHhcc
Confidence 6554 67999999999987653
No 62
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.71 E-value=1.7e-16 Score=183.86 Aligned_cols=224 Identities=21% Similarity=0.305 Sum_probs=157.5
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeech
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAA 335 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs~ 335 (606)
-.++.++|.++..+++.+++.. . .+.++||+||||||||++|+++|... +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r---~---------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR---R---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc---c---------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 4577899999886666554433 1 23568999999999999999999864 445566666
Q ss_pred hhHH--HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 336 SEFV--ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 336 se~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
..+. ..|.|+.+.+++.+|+.++...++||||||||.+...+.. .++..+ ..|.|...+ .+..+.||++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d---~~nlLkp~L----~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVD---AANLIKPLL----SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHH---HHHHHHHHH----hCCCeEEEec
Confidence 6555 3577888899999999998888899999999999765421 111222 222222222 2567999999
Q ss_pred eCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccH-----HHHHHhCC-----CCCHHHH
Q 007367 414 TNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF-----EKISRRTP-----GFTGADL 478 (606)
Q Consensus 414 TN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl-----~~La~~t~-----G~SgaDL 478 (606)
||.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+..+.....++++ ...+..+. .+-+...
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99865 47999999 996 7999999999999999987655444444432 22222222 3456678
Q ss_pred HHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHcCC
Q 007367 479 QNLMNEAAILAA----RRDLKEISKDEISDALERIIAGP 513 (606)
Q Consensus 479 ~~Lv~eA~~~A~----rr~~~~It~edl~~Al~ri~~g~ 513 (606)
..++++|+.... ......++.+|+.+.+.+...-|
T Consensus 399 idlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred HHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 889998875432 22334689999999988866433
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=3.3e-16 Score=177.95 Aligned_cols=196 Identities=21% Similarity=0.256 Sum_probs=142.7
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee--ee------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF--SC------ 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi--~v------ 333 (606)
++.+.+|+||+|++++++.|++.+.. .+.++.+||+||+|||||++|+++|+.+++.-- ..
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 45678999999999999888776642 244667899999999999999999998865210 00
Q ss_pred chhhHHH----------HHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVE----------LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~----------~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|..+.+ .....+...++++++.+.. ....|+||||+|.|.. ...|.||+.|
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------------~A~NALLKtL 143 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------------HAFNAMLKTL 143 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------------HHHHHHHHHH
Confidence 1111110 0011234557777776542 2346999999999932 3578888888
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL 478 (606)
+.. ..++++|.+||.++.|.+.|++ |+ .++.|..++.++..++|+..+++.++. .+..+..|++...| +.++.
T Consensus 144 EEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdA 217 (830)
T PRK07003 144 EEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDA 217 (830)
T ss_pred Hhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 843 3468889999999999999999 66 688999999999999999888765554 33346667777775 88999
Q ss_pred HHHHHHHHHH
Q 007367 479 QNLMNEAAIL 488 (606)
Q Consensus 479 ~~Lv~eA~~~ 488 (606)
.+++.++..+
T Consensus 218 LsLLdQAia~ 227 (830)
T PRK07003 218 LSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHh
Confidence 9998887644
No 64
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.70 E-value=1.4e-15 Score=162.38 Aligned_cols=223 Identities=19% Similarity=0.234 Sum_probs=152.1
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCeeeech
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---------VPFFSCAA 335 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g---------~pfi~vs~ 335 (606)
....++++|.++..++|...+..... ...+.+++|+||||||||++++++++++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34556899999998888776654221 13356799999999999999999987642 57888887
Q ss_pred hhHH----------HHHh--hh--------hhHHHHHHHHHHH-cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHH
Q 007367 336 SEFV----------ELFV--GV--------GASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (606)
Q Consensus 336 se~~----------~~~~--G~--------~~~~vr~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~ 394 (606)
.... .... +. .......+++... ...+.||+|||+|.+... .+..+..
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~ 151 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQ 151 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHh
Confidence 5422 1111 11 0122344555443 345789999999999521 1135566
Q ss_pred HHHHhccC-CCCCcEEEEEeeCCCC---CccccccCCCccc-cccccCCCCHHHHHHHHHHHhcC---CCCCCcccHHH-
Q 007367 395 LLTEMDGF-SGNSGVIVLAATNRPD---VLDSALLRPGRFD-RQVTVDRPDVAGRVKILQVHSRG---KALAKDVDFEK- 465 (606)
Q Consensus 395 LL~eld~~-~~~~~ViVIaaTN~p~---~LD~aLlRpgRFd-~~I~v~~Pd~~eR~~IL~~~l~~---~~l~~dvdl~~- 465 (606)
|+...+.. ..+.++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.+++. .....+..+..
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 229 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLC 229 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHH
Confidence 66542211 2235789999999886 47778877 675 67999999999999999988752 11112221233
Q ss_pred --HHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007367 466 --ISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (606)
Q Consensus 466 --La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri 509 (606)
++..+.| ..+.+.++|..|...|..++...|+.+|+..|++.+
T Consensus 230 ~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 230 AALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3334444 677888899999999988888899999999998876
No 65
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=5.5e-16 Score=171.56 Aligned_cols=205 Identities=20% Similarity=0.304 Sum_probs=145.9
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV------------- 328 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~------------- 328 (606)
...+.+|+||+|++++++.|+..+.. . +.|.++|||||||||||++|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~---~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKK---N--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 34577999999999998877765542 1 35677999999999999999999998764
Q ss_pred -----------CeeeechhhHHHHHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHH
Q 007367 329 -----------PFFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTIN 393 (606)
Q Consensus 329 -----------pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln 393 (606)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+.. ..++
T Consensus 76 ~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~ 135 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFN 135 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHH
Confidence 233333211 1233456666655542 2346999999999832 3467
Q ss_pred HHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCC
Q 007367 394 QLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPG 472 (606)
Q Consensus 394 ~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G 472 (606)
.||..++.. ...+++|++|+.+..+++++++ |+ ..+.+.+++.++...+++..++..++. .+..+..|+..+.|
T Consensus 136 ~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 136 ALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 788888753 3457777777778899999999 76 489999999999999999887654443 33346777777764
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007367 473 FTGADLQNLMNEAAILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 473 ~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ 507 (606)
+.+++.+.++.+...+ + ..|+.+++.+++.
T Consensus 211 -dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 211 -GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred -CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 7777777777654332 2 3499998887764
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=5.9e-16 Score=174.28 Aligned_cols=203 Identities=20% Similarity=0.275 Sum_probs=148.2
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------ 329 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p------------ 329 (606)
+..+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 34568999999999998888777652 2446788999999999999999999998652
Q ss_pred ------------eeeechhhHHHHHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHH
Q 007367 330 ------------FFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTIN 393 (606)
Q Consensus 330 ------------fi~vs~se~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln 393 (606)
++.+++++ ..+...+|++.+.+.. +...|+||||+|.|.. ...+
T Consensus 77 sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A~N 136 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HSFN 136 (702)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HHHH
Confidence 22222211 1234456676665532 3457999999999832 3567
Q ss_pred HHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCC
Q 007367 394 QLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPG 472 (606)
Q Consensus 394 ~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G 472 (606)
.||..|+.. ...+.+|.+|+.+..+.+.+++ |+ .++.|..++.++..+.++..+++.++..+ ..+..|+....|
T Consensus 137 ALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 137 ALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888853 3456777788888888888887 66 68899999999999999888876655433 346667777664
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 473 FTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 473 ~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
+.+++.+++..+..+ +...|+.+++...
T Consensus 212 -dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 212 -SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 899999998877543 3456888887664
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=99.69 E-value=7.3e-16 Score=171.47 Aligned_cols=209 Identities=22% Similarity=0.317 Sum_probs=145.3
Q ss_pred cccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 259 QEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 259 ~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
|..+..+.+|+||+|++++++.|++.+..... ..+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 44556788999999999999999888765332 1347789999999999999999999999999999998875
Q ss_pred HHHHhhhhhHHHHHHHHHHHc------CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 007367 339 VELFVGVGASRVRDLFEKAKS------KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~------~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIa 412 (606)
... ..++.+...+.. ..+.||+|||+|.+.... ....++.|+..++. .+..+|+
T Consensus 76 r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIl 135 (482)
T PRK04195 76 RTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIIL 135 (482)
T ss_pred ccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEE
Confidence 421 122222222221 246799999999985321 11234556666652 2335666
Q ss_pred eeCCCCCccc-cccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 413 ATNRPDVLDS-ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 413 aTN~p~~LD~-aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
++|.+..++. .|++ | ...|.|+.|+..++..+++..+...++. .+..+..|+..+.| |++.+++.....+
T Consensus 136 i~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a- 207 (482)
T PRK04195 136 TANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA- 207 (482)
T ss_pred eccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh-
Confidence 7888887776 5554 3 3689999999999999999888665543 33447777777654 7777777665433
Q ss_pred HhCCCCCCHHHHHH
Q 007367 491 RRDLKEISKDEISD 504 (606)
Q Consensus 491 rr~~~~It~edl~~ 504 (606)
.+...++.+++..
T Consensus 208 -~~~~~it~~~v~~ 220 (482)
T PRK04195 208 -EGYGKLTLEDVKT 220 (482)
T ss_pred -cCCCCCcHHHHHH
Confidence 3445567666643
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.1e-15 Score=164.14 Aligned_cols=211 Identities=18% Similarity=0.226 Sum_probs=148.3
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee--------e
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS--------C 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~--------v 333 (606)
+..+.+|+||+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+++.+..-. .
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 45578999999999999888776642 1346678999999999999999999988642110 1
Q ss_pred chhhHHHH----------HhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVEL----------FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~~----------~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|.++... ........++++.+.+.. ....|++|||+|.+. ....+.||..+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLLk~l 143 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALLKTL 143 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHHHHH
Confidence 12221110 000223446666665542 234599999999983 23567788888
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL 478 (606)
+.. ...+.+|.+|+.++.+.+.+++ |+ ..+++++|+.++..++++..++..+.. .+..+..++..+.| +.+++
T Consensus 144 Ee~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~a 217 (363)
T PRK14961 144 EEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDA 217 (363)
T ss_pred hcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 753 3456677777888889999988 66 578999999999999999887765543 33446667777765 88898
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al~ 507 (606)
.++++.+... +...|+.+++.+++.
T Consensus 218 l~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 218 LNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8888877543 356788888877653
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.68 E-value=2.6e-15 Score=163.97 Aligned_cols=201 Identities=25% Similarity=0.385 Sum_probs=145.0
Q ss_pred CCccccccccchHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 264 TGVTFADVAGADQAKLE---LQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~e---L~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
.+.+|+|++|++++... |.+++. . ..+.++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~---~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIE---A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHH---c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 45789999999999666 555553 2 123479999999999999999999999999999987532
Q ss_pred HHhhhhhHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC-
Q 007367 341 LFVGVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN- 415 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN- 415 (606)
+...++.+++.+. .....||||||+|.+.. ...+.|+..++. ..+++|++|+
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCC
Confidence 2334556666553 23567999999999832 233456666652 4466666653
Q ss_pred -CCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCC--CC-C-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 416 -RPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK--AL-A-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 416 -~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~--~l-~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
....+++++++ |+ ..+.+++++.++...+++..+... ++ . .+..+..+++.+. .+.+.+.++++.+...
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~-Gd~R~aln~Le~~~~~-- 203 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLAN-GDARRALNLLELAALG-- 203 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCC-CCHHHHHHHHHHHHHc--
Confidence 33478999999 77 688999999999999999876432 21 1 2333567777774 5788888888877644
Q ss_pred HhCCCCCCHHHHHHHHHHHH
Q 007367 491 RRDLKEISKDEISDALERII 510 (606)
Q Consensus 491 rr~~~~It~edl~~Al~ri~ 510 (606)
...|+.+++.+++....
T Consensus 204 ---~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 ---VDSITLELLEEALQKRA 220 (413)
T ss_pred ---cCCCCHHHHHHHHhhhh
Confidence 45799999999988754
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.3e-15 Score=169.59 Aligned_cols=214 Identities=21% Similarity=0.301 Sum_probs=155.1
Q ss_pred cCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe----------
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF---------- 330 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf---------- 330 (606)
.+..+.+|+|++|++.+++.|+..+.. .+.+.++||+||||||||++|+++|+.+++.-
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 345678999999999998888765542 24567899999999999999999999986521
Q ss_pred --eeechhhHHHH----------HhhhhhHHHHHHHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHH
Q 007367 331 --FSCAASEFVEL----------FVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (606)
Q Consensus 331 --i~vs~se~~~~----------~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~ 394 (606)
..-+|..+.+. ....+...++++++.+... ...|++|||+|.+. ...++.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a~na 147 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGAFNA 147 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHHHHH
Confidence 11122222111 0112456778888877532 34699999999983 245778
Q ss_pred HHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCC
Q 007367 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGF 473 (606)
Q Consensus 395 LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G~ 473 (606)
|+..|+. ....+++|.+|+.++.+++.+++ |+ ..+++..++.++..++++..+++.+...+ ..+..|+..+.|
T Consensus 148 LLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G- 221 (507)
T PRK06645 148 LLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG- 221 (507)
T ss_pred HHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888884 34567777788888899999998 66 57889999999999999998876665433 346778887765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 474 TGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 474 SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
+.+++.++++.+..++... ...|+.+++.+.+
T Consensus 222 slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 222 SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 9999999999887665322 2368888777654
No 71
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.2e-15 Score=170.44 Aligned_cols=204 Identities=18% Similarity=0.219 Sum_probs=148.7
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------ 329 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p------------ 329 (606)
+..+.+|+||+|++.+++.|+..+..- +.|..+||+||+|||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 456789999999999998888777532 346678999999999999999999988653
Q ss_pred ------------eeeechhhHHHHHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHH
Q 007367 330 ------------FFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTIN 393 (606)
Q Consensus 330 ------------fi~vs~se~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln 393 (606)
+++++++ ...+...+|++.+.+.. +...|+||||+|.+.. ...|
T Consensus 78 ~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------~a~n 137 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------HSFN 137 (509)
T ss_pred HHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------HHHH
Confidence 2222221 12234557777766542 3346999999999932 3578
Q ss_pred HHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCC
Q 007367 394 QLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPG 472 (606)
Q Consensus 394 ~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G 472 (606)
.||..|+.. ...+.+|.+|+.+..+.+.+++ |+ ..++|..++.++..+.++..+++.++. .+..+..+++...
T Consensus 138 aLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~- 211 (509)
T PRK14958 138 ALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN- 211 (509)
T ss_pred HHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 888888854 3457777778888888888988 66 678899999998888888777665554 3334667777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 473 FTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 473 ~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.+.+++.++++.+..+ +...|+.+++.+.+
T Consensus 212 GslR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 212 GSVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred CcHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 4899999999887543 34567777776554
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.9e-15 Score=167.13 Aligned_cols=203 Identities=20% Similarity=0.305 Sum_probs=150.9
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV------------- 328 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~------------- 328 (606)
+..+.+|+||+|++.+++.|++.+.. .+.|+++||+||+|+|||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 34568999999999998888766543 245778999999999999999999997643
Q ss_pred -----------CeeeechhhHHHHHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHH
Q 007367 329 -----------PFFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTIN 393 (606)
Q Consensus 329 -----------pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln 393 (606)
.++++++++ ..+...+|++.+.+.. ....|++|||+|.+. ...+|
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~N 134 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFN 134 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHH
Confidence 223333321 1244567887777653 234699999999983 24678
Q ss_pred HHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCC
Q 007367 394 QLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPG 472 (606)
Q Consensus 394 ~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G 472 (606)
.||..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|..++.++..+.++..+++.+.. .+..+..|++.+.|
T Consensus 135 aLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 135 ALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999853 3457777788888889999998 66 568999999999999999888765554 33346677777764
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 473 FTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 473 ~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
+.+++.++++.+..+. + ..|+.+++.+.
T Consensus 210 -slR~alslLdqli~y~---~-~~It~e~V~~l 237 (491)
T PRK14964 210 -SMRNALFLLEQAAIYS---N-NKISEKSVRDL 237 (491)
T ss_pred -CHHHHHHHHHHHHHhc---C-CCCCHHHHHHH
Confidence 8999999998887653 2 46888887764
No 73
>PRK06893 DNA replication initiation factor; Validated
Probab=99.66 E-value=4.2e-15 Score=149.92 Aligned_cols=211 Identities=14% Similarity=0.144 Sum_probs=136.4
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~ 339 (606)
....+|++++|.+... .+..+...... .....++||||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNFID---------LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHhhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4568999999877542 12212211111 111357999999999999999999986 3455555554321
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
.. ..++++..+ ...+|+|||++.+.. ....+..+..++..+.. .+..++|++++..|..
T Consensus 80 ~~--------~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~ 138 (229)
T PRK06893 80 YF--------SPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE--QGKTLLLISADCSPHA 138 (229)
T ss_pred hh--------hHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHH
Confidence 11 112333333 346999999999843 22334445555554431 1223455666666776
Q ss_pred cc---ccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 007367 420 LD---SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK 495 (606)
Q Consensus 420 LD---~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~ 495 (606)
++ +.|.++.+++..+.++.||.++|.+|++.++...++.- +.-++.|+++..| +.+.+.++++.....+. ...+
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~~~ 216 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASL-QAQR 216 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH-hcCC
Confidence 54 88998666778999999999999999998886555543 3336777777775 89999999998753333 4335
Q ss_pred CCCHHHHHHHH
Q 007367 496 EISKDEISDAL 506 (606)
Q Consensus 496 ~It~edl~~Al 506 (606)
.||...+++++
T Consensus 217 ~it~~~v~~~L 227 (229)
T PRK06893 217 KLTIPFVKEIL 227 (229)
T ss_pred CCCHHHHHHHh
Confidence 79999888775
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=1.9e-15 Score=171.41 Aligned_cols=210 Identities=20% Similarity=0.295 Sum_probs=150.7
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------ee-
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-------SC- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi-------~v- 333 (606)
+..+.+|+||+|++.+++.|++.+.. .+.++++||+||+|+|||++|+++|++++++-. .+
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 45678999999999999888877653 245778999999999999999999998765311 00
Q ss_pred chhhHHHH----------HhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVEL----------FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~~----------~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|..+... ....+...+|++++.+.. ....||||||+|.+. ....|.||+.|
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALLKtL 143 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLKTL 143 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHHHHH
Confidence 11111100 112234567777776532 334699999999883 23577888888
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G~SgaDL 478 (606)
+.. ...+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++....|+..+++.++.-+ ..+..|++... .+.+++
T Consensus 144 EEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdA 217 (709)
T PRK08691 144 EEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDA 217 (709)
T ss_pred HhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHH
Confidence 853 3456778888888999989887 76 67888899999999999988877665433 34677777775 589999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.++++.+..+ +...|+.+++...+
T Consensus 218 lnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 218 LSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 9999887654 23457777766654
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=1.9e-15 Score=171.64 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=147.2
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------ee-c
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-------SC-A 334 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi-------~v-s 334 (606)
..+.+|+||+|++.+++.|++.+..- +.+..+||+||+|+|||++|+++|+.+++... .+ +
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 45679999999999998888766531 34667899999999999999999998866311 00 1
Q ss_pred hhhHH--------HH--HhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc
Q 007367 335 ASEFV--------EL--FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (606)
Q Consensus 335 ~se~~--------~~--~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld 400 (606)
|..+. +. -...+...+|++.+.+.. +...|+||||+|.|. ....|.||+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NALLKtLE 144 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALLKTLE 144 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHHHHHHH
Confidence 11111 00 001123456666665442 345699999999993 246888999998
Q ss_pred cCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHHH
Q 007367 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADLQ 479 (606)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G~SgaDL~ 479 (606)
. ....+++|.+|+.+..|.+.+++ |+ ..+.|..++.++..+.|+..++..++..+ ..+..|+....| +.++..
T Consensus 145 E--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al 218 (647)
T PRK07994 145 E--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDAL 218 (647)
T ss_pred c--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 5 34567777788889999999999 75 78999999999999999988765554333 345667777665 899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 480 NLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 480 ~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
+++..+... +...|+.+++.+.+
T Consensus 219 ~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 219 SLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHH
Confidence 999876533 22446666665543
No 76
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=4.1e-15 Score=167.27 Aligned_cols=225 Identities=19% Similarity=0.287 Sum_probs=151.5
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se 337 (606)
....+|++++.-+.......-+.....++. ...+.++|||++|+|||+|+++|++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 346799998744433322222222232221 112348999999999999999999976 56889999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
|...+.........+.|.+-. ..+++|+||||+.+..+ +..+..+..+++.+. .+++-+||++...|
T Consensus 355 f~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk---------e~tqeeLF~l~N~l~---e~gk~IIITSd~~P 421 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK---------ESTQEEFFHTFNTLH---NANKQIVLSSDRPP 421 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC---------HHHHHHHHHHHHHHH---hcCCCEEEecCCCh
Confidence 987766543332223344322 24589999999998532 223344444444443 22333444443334
Q ss_pred C---CccccccCCCcc--ccccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 007367 418 D---VLDSALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQNLMNEAAILAAR 491 (606)
Q Consensus 418 ~---~LD~aLlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~t~G~SgaDL~~Lv~eA~~~A~r 491 (606)
. .+++.|.+ || ..++.+..||.+.|.+||+.++...++.-+.+ ++.|+.+..+ +.++|+.++++....+..
T Consensus 422 ~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~ 498 (617)
T PRK14086 422 KQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASL 498 (617)
T ss_pred HhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh
Confidence 3 47889999 66 55779999999999999999987766654433 5777777764 899999999998776666
Q ss_pred hCCCCCCHHHHHHHHHHHHc
Q 007367 492 RDLKEISKDEISDALERIIA 511 (606)
Q Consensus 492 r~~~~It~edl~~Al~ri~~ 511 (606)
.+ +.|+.+.++++++.++.
T Consensus 499 ~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 499 NR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred hC-CCCCHHHHHHHHHHhhc
Confidence 55 66999999999887654
No 77
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.66 E-value=6.8e-15 Score=158.79 Aligned_cols=223 Identities=18% Similarity=0.244 Sum_probs=153.9
Q ss_pred ccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhhHH
Q 007367 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEFV 339 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se~~ 339 (606)
...+.++|.++..++|...+.. +.. ..|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 4557799999887777776643 221 235678999999999999999999876 5788999885321
Q ss_pred ----------HHHhhh-------h-hHHHHHHHHHHH-cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc
Q 007367 340 ----------ELFVGV-------G-ASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (606)
Q Consensus 340 ----------~~~~G~-------~-~~~vr~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld 400 (606)
....+. . ......+.+... ...+.||+|||+|.+.... ....+..|+..++
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~ 167 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHE 167 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhh
Confidence 111110 1 112233333333 2456899999999996211 1246777777666
Q ss_pred cCCCCCcEEEEEeeCCCC---CccccccCCCccc-cccccCCCCHHHHHHHHHHHhcCC---CCCCcccHHHHHHhCCC-
Q 007367 401 GFSGNSGVIVLAATNRPD---VLDSALLRPGRFD-RQVTVDRPDVAGRVKILQVHSRGK---ALAKDVDFEKISRRTPG- 472 (606)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~---~LD~aLlRpgRFd-~~I~v~~Pd~~eR~~IL~~~l~~~---~l~~dvdl~~La~~t~G- 472 (606)
.... .++.+|+++|..+ .+++.+.+ ||. ..|.+++++.++..+|++.+++.. ....+..++.+++.+.+
T Consensus 168 ~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 244 (394)
T PRK00411 168 EYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTARE 244 (394)
T ss_pred ccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHh
Confidence 5432 3688888888764 46777766 553 578999999999999999887532 11233335666666633
Q ss_pred -CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 473 -FTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 473 -~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
...+.+.++|..|...|..++...|+.+|+.+|++++.
T Consensus 245 ~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 245 HGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 34667778999999999988889999999999998763
No 78
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.66 E-value=3e-15 Score=149.07 Aligned_cols=205 Identities=18% Similarity=0.241 Sum_probs=136.4
Q ss_pred CCcccccccc--chHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH
Q 007367 264 TGVTFADVAG--ADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF 338 (606)
Q Consensus 264 ~~~tf~DI~G--~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~ 338 (606)
...+|+|+++ .+.+.+.+++++. ...+.+++|+||+|||||++|+++++++ +.++++++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4578888873 3445555554432 1235689999999999999999999876 578999999887
Q ss_pred HHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
.... .+++..... +.+|+|||+|.+... ......+..++..+. .....+|+.++..+.
T Consensus 78 ~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~---------~~~~~~L~~~l~~~~---~~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQ---------PEWQEALFHLYNRVR---EAGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhccc--CCEEEEeChhhhcCC---------hHHHHHHHHHHHHHH---HcCCeEEEECCCChH
Confidence 6432 233333322 359999999998321 122334444444332 222334444444444
Q ss_pred Ccc---ccccCCCcc--ccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007367 419 VLD---SALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 419 ~LD---~aLlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
.++ +.|.+ || ..++.+++|+.+++..+++.++.+.++. .+.-+..|++. .+.+.+++.++++++...+...
T Consensus 136 ~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~ 212 (226)
T TIGR03420 136 QLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAA 212 (226)
T ss_pred HCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHh
Confidence 332 66776 55 4789999999999999999877654443 23336777775 5669999999999987665554
Q ss_pred CCCCCCHHHHHHHH
Q 007367 493 DLKEISKDEISDAL 506 (606)
Q Consensus 493 ~~~~It~edl~~Al 506 (606)
+ ..|+.+.+.+.+
T Consensus 213 ~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 213 K-RKITIPFVKEVL 225 (226)
T ss_pred C-CCCCHHHHHHHh
Confidence 4 579998887765
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=3.3e-15 Score=172.59 Aligned_cols=194 Identities=20% Similarity=0.236 Sum_probs=139.1
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------eee-
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf-------i~v- 333 (606)
+..+.+|+||+|++.+++.|+..+..- +++..+||+||||||||++||++|+.+++.- ..|
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 345689999999999998887766531 3466789999999999999999999987641 111
Q ss_pred chhhHHHH-------Hh---hhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVEL-------FV---GVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~~-------~~---G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|-.+.+. +. ..+...+|.+.+.+.. +...|+||||+|.|. ...+|.||..|
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLKtL 143 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLKTL 143 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHHHH
Confidence 11111110 00 1223446666655542 334699999999993 35788899999
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~La~~t~G~SgaDL 478 (606)
+.. ..++++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.|+..+...++.. +..+..|+..+.| +.|++
T Consensus 144 EEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~A 217 (944)
T PRK14949 144 EEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDA 217 (944)
T ss_pred hcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 853 3457777778888889999998 65 6789999999999999988776544432 2335667777665 89999
Q ss_pred HHHHHHHH
Q 007367 479 QNLMNEAA 486 (606)
Q Consensus 479 ~~Lv~eA~ 486 (606)
.+++..+.
T Consensus 218 LnLLdQal 225 (944)
T PRK14949 218 LSLTDQAI 225 (944)
T ss_pred HHHHHHHH
Confidence 99998776
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=9.1e-15 Score=153.99 Aligned_cols=213 Identities=21% Similarity=0.246 Sum_probs=140.1
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCeee
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-----VPFFS 332 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g-----~pfi~ 332 (606)
+|..+..+.+|+|++|++++++.|.+++.. + . ..++||+||||||||++|+++++++. .++++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~---~--------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDS---P--------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhC---C--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 345566778999999999998888776642 1 1 12689999999999999999999873 45788
Q ss_pred echhhHHHHHh-------------hh-------hhHHHHHHHHHHHc-----CCCeEEEEccccchhhccCCCCCCCChh
Q 007367 333 CAASEFVELFV-------------GV-------GASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDE 387 (606)
Q Consensus 333 vs~se~~~~~~-------------G~-------~~~~vr~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e 387 (606)
++++++..... +. ....++.+.+.... ..+.+|+|||+|.+.. .
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~ 140 (337)
T PRK12402 72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------D 140 (337)
T ss_pred echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------H
Confidence 88887643210 10 11223333333322 2345999999998832 2
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHH
Q 007367 388 REQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKI 466 (606)
Q Consensus 388 ~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~L 466 (606)
. .+.|+..++.... ...+|.+++.+..+.+.|.+ |+ ..+.+.+|+.++..++++..+++.++. .+..+..+
T Consensus 141 ~---~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l 212 (337)
T PRK12402 141 A---QQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELI 212 (337)
T ss_pred H---HHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2 3344555554333 23455566666677778887 55 578999999999999999888765554 34457778
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007367 467 SRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 467 a~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ 507 (606)
+..+. .+.+++.+.+..+ + . ....|+.+++.+++.
T Consensus 213 ~~~~~-gdlr~l~~~l~~~---~-~-~~~~It~~~v~~~~~ 247 (337)
T PRK12402 213 AYYAG-GDLRKAILTLQTA---A-L-AAGEITMEAAYEALG 247 (337)
T ss_pred HHHcC-CCHHHHHHHHHHH---H-H-cCCCCCHHHHHHHhC
Confidence 87774 3566655555433 2 2 224699999887654
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.8e-15 Score=164.62 Aligned_cols=203 Identities=22% Similarity=0.312 Sum_probs=146.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------ 329 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p------------ 329 (606)
+..+.+|+||+|++++++.|+..+.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 35578999999999999988887764 1346678999999999999999999987531
Q ss_pred -----------eeeechhhHHHHHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHH
Q 007367 330 -----------FFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (606)
Q Consensus 330 -----------fi~vs~se~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~ 394 (606)
++.++++ ...+...+|++.+.+.. ..+.||+|||+|.+. ...++.
T Consensus 76 c~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~na 135 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNA 135 (504)
T ss_pred hHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHH
Confidence 2222221 11233456666555442 345799999999872 246788
Q ss_pred HHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCC
Q 007367 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGF 473 (606)
Q Consensus 395 LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~La~~t~G~ 473 (606)
|+..++.. ...+++|.+|+.+..+.+.+.+ |+ ..+.|..|+.++..+.++..+++.++.. +..+..++..+.|
T Consensus 136 LLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G- 209 (504)
T PRK14963 136 LLKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG- 209 (504)
T ss_pred HHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888853 3456777788888999999998 65 4789999999999999998887666543 3346667777765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 474 TGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 474 SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
+.+++.++++.+... ...|+.+++.+.+
T Consensus 210 dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 210 AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 778888888776432 2468888776653
No 82
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=2.7e-15 Score=176.53 Aligned_cols=217 Identities=21% Similarity=0.308 Sum_probs=152.1
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs 334 (606)
+-++++++|+++. +++++..|.... ..+++|+||||||||++|+.+|... +..++.++
T Consensus 183 ~~~ld~~iGr~~e---i~~~i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDE---IRQMIDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHH---HHHHHHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 4578999999986 556666544322 2478999999999999999999875 24577777
Q ss_pred hhhHHH--HHhhhhhHHHHHHHHHHHc-CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 007367 335 ASEFVE--LFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (606)
Q Consensus 335 ~se~~~--~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVI 411 (606)
.+.+.. .+.|+.+.+++.+|+.++. ..++||||||||.+.+.++.. ++.+ .-|.|+-.+. ++.+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l~----~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPALA----RGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHhh----CCCeEEE
Confidence 776653 5778888999999999864 468999999999997654321 1111 2233333333 5679999
Q ss_pred EeeCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCC----C-CCcccHHHHHHhCCCCC-----HH
Q 007367 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA----L-AKDVDFEKISRRTPGFT-----GA 476 (606)
Q Consensus 412 aaTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~----l-~~dvdl~~La~~t~G~S-----ga 476 (606)
+||+..+ .+|++|.| ||. .|.++.|+.+++.+||+.+.+... + ..+..+..++..+.+|- +.
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCcc
Confidence 9999753 48999999 995 899999999999999876554322 1 13445677777777653 44
Q ss_pred HHHHHHHHHHHHHHHh-CCCCCCHHHHHHHH
Q 007367 477 DLQNLMNEAAILAARR-DLKEISKDEISDAL 506 (606)
Q Consensus 477 DL~~Lv~eA~~~A~rr-~~~~It~edl~~Al 506 (606)
-...++++|+.....+ ....+..+++.+.+
T Consensus 398 KAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 398 KAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 5567888876655433 33344555555444
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.8e-15 Score=168.01 Aligned_cols=210 Identities=18% Similarity=0.246 Sum_probs=148.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-----------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF----------- 330 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf----------- 330 (606)
+..+.+|+||+|++.+++.|++.+..- +.+..+||+||+|||||++|+++|+.+++.-
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 355679999999999988888776642 3466789999999999999999999886510
Q ss_pred -e-eechhhHH--------HH--HhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHH
Q 007367 331 -F-SCAASEFV--------EL--FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (606)
Q Consensus 331 -i-~vs~se~~--------~~--~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~ 394 (606)
- .-+|..+. +. ....+...+|++.+.+.. +...|++|||+|.|.. ...|.
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------~a~Na 143 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------TAFNA 143 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------------HHHHH
Confidence 0 00121111 10 011234567777776543 2245999999999832 35788
Q ss_pred HHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCC
Q 007367 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGF 473 (606)
Q Consensus 395 LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G~ 473 (606)
||..++. ....+++|.+|+.+..+.+.+++ |+ .+++|..++.++..+.++..+.+.++..+ ..+..|+..+.|
T Consensus 144 LLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G- 217 (618)
T PRK14951 144 MLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG- 217 (618)
T ss_pred HHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888885 33466777777888888888888 65 68899999999999999988866655433 346777777775
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 474 TGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 474 SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
+.+++.++++.+..+ +...|+.+++.+.+
T Consensus 218 slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 218 SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 899999988776544 23567777665543
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.6e-14 Score=159.08 Aligned_cols=230 Identities=17% Similarity=0.243 Sum_probs=146.2
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~ 339 (606)
.+..||++.+--+..+....-+..+.+.+.. .+....++++||||+|+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 4567999987323332222222222222110 011123579999999999999999999875 6889999998887
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC-
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD- 418 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~- 418 (606)
..+.......-...|.... ..+++|+|||++.+..+ ...++.+..++..+. .....+|+++++.|.
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k---------~~~qeelf~l~N~l~---~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK---------GATQEEFFHTFNSLH---TEGKLIVISSTCAPQD 248 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC---------hhhHHHHHHHHHHHH---HCCCcEEEecCCCHHH
Confidence 6544332211122344332 34579999999998432 122333333333322 123345555555554
Q ss_pred --CccccccCCCccc--cccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHh-
Q 007367 419 --VLDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQNLMNEAAILAARR- 492 (606)
Q Consensus 419 --~LD~aLlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~t~G~SgaDL~~Lv~eA~~~A~rr- 492 (606)
.+++.|.+ ||. ..+.+..|+.++|.+||+..++..++.-+.+ ++.|+....+ +.++|.+.++..+...+..
T Consensus 249 l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 249 LKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 46789998 885 7899999999999999999887766543333 5557776664 7889999888875322221
Q ss_pred -CCCCCCHHHHHHHHHHHHc
Q 007367 493 -DLKEISKDEISDALERIIA 511 (606)
Q Consensus 493 -~~~~It~edl~~Al~ri~~ 511 (606)
....|+.+++++++.....
T Consensus 326 ~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 326 LSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred hhCCCCCHHHHHHHHHHhhh
Confidence 2357999999999988654
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=99.63 E-value=1.2e-14 Score=153.58 Aligned_cols=201 Identities=20% Similarity=0.189 Sum_probs=135.6
Q ss_pred cCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----Ceeeech
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-----PFFSCAA 335 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~-----pfi~vs~ 335 (606)
.+..+.+|+|++|++++.+.|+.++.. . ..| ++|||||||||||++|+++|+++.. .++++++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~---~--------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD---G--------NMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc---C--------CCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 455678999999999998888776542 1 122 5899999999999999999999732 3666666
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHH-------cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcE
Q 007367 336 SEFVELFVGVGASRVRDLFEKAK-------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGV 408 (606)
Q Consensus 336 se~~~~~~G~~~~~vr~lF~~A~-------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~V 408 (606)
++... ...+++..+... .....|++|||+|.+.. . ..+.|+..|+.+.. ..
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~---aq~aL~~~lE~~~~--~t 130 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------G---AQQALRRTMEIYSN--TT 130 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------H---HHHHHHHHHhcccC--Cc
Confidence 55321 122333332211 12357999999999832 2 23555666664333 34
Q ss_pred EEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007367 409 IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (606)
Q Consensus 409 iVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~ 487 (606)
.+|.+||....+.++|++ |+ ..+.|+.|+.++....++..+++.++. .+..+..++....| +.+.+.+.++.+.
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~~- 205 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQATH- 205 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH-
Confidence 566778888888899998 65 579999999999999999888665543 34446777777654 5555555555221
Q ss_pred HHHHhCCCCCCHHHHHH
Q 007367 488 LAARRDLKEISKDEISD 504 (606)
Q Consensus 488 ~A~rr~~~~It~edl~~ 504 (606)
.+...|+.+++.+
T Consensus 206 ----~~~~~i~~~~v~~ 218 (319)
T PLN03025 206 ----SGFGFVNQENVFK 218 (319)
T ss_pred ----hcCCCCCHHHHHH
Confidence 1334677777654
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.63 E-value=1.7e-14 Score=166.68 Aligned_cols=209 Identities=21% Similarity=0.234 Sum_probs=141.4
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~ 342 (606)
..+.+|+|++|++....+...+...+... ...++|||||||||||++|+++++..+.+|+.+++...
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~---- 88 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA---- 88 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh----
Confidence 44689999999999875433333333321 12368999999999999999999999999999887531
Q ss_pred hhhhhHHHHHHHHHHH-----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC-
Q 007367 343 VGVGASRVRDLFEKAK-----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR- 416 (606)
Q Consensus 343 ~G~~~~~vr~lF~~A~-----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~- 416 (606)
+.+.+++.++.+. .....+|||||+|.+.. ...+.|+..++ +..+++|++|+.
T Consensus 89 ---~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE----~g~IiLI~aTTen 147 (725)
T PRK13341 89 ---GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVE----NGTITLIGATTEN 147 (725)
T ss_pred ---hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhc----CceEEEEEecCCC
Confidence 1122333343331 13456999999999832 12344566555 245677766643
Q ss_pred -CCCccccccCCCccccccccCCCCHHHHHHHHHHHhc-------CCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007367 417 -PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR-------GKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (606)
Q Consensus 417 -p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~-------~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~ 487 (606)
...+++++++ |+ ..+.+++++.+++..+++..+. ...+. .+..++.|++... .+.+++.++++.+..
T Consensus 148 p~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~-GD~R~lln~Le~a~~ 223 (725)
T PRK13341 148 PYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN-GDARSLLNALELAVE 223 (725)
T ss_pred hHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 2468899998 54 5689999999999999998775 22222 2333677777775 588999999998764
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHH
Q 007367 488 LAARRDL--KEISKDEISDALERI 509 (606)
Q Consensus 488 ~A~rr~~--~~It~edl~~Al~ri 509 (606)
.+..... ..|+.+++.+++.+.
T Consensus 224 ~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 224 STPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred hcccCCCCceeccHHHHHHHHHHh
Confidence 3322221 237888888887764
No 87
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.6e-15 Score=164.76 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=148.2
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------eee-
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf-------i~v- 333 (606)
+..+.+|+||+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.. -.+
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34567999999999999888877653 13456789999999999999999999886521 111
Q ss_pred chhhHHH--------H--HhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVE--------L--FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~--------~--~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|..+.. . ....+...+|++.+.+.. ....|+||||+|.+. ....|.||..+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLLK~L 143 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAMLKTL 143 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHHHHH
Confidence 1111100 0 001234557777776643 234699999999983 24578899998
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G~SgaDL 478 (606)
+. ....+++|.+|+.++.+.+.+++ |+ .+++|+.++.++..+.+...+++.++..+ ..+..++..+. .+.+++
T Consensus 144 Ee--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gslr~a 217 (527)
T PRK14969 144 EE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSMRDA 217 (527)
T ss_pred hC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHH
Confidence 85 33456777777888888888888 66 78999999999999888887765554433 33566666665 588999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.++++.+..+ +...|+.+++.+.+
T Consensus 218 l~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 218 LSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 9999887654 34568887776654
No 88
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=9.1e-15 Score=165.17 Aligned_cols=209 Identities=22% Similarity=0.320 Sum_probs=149.2
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------eee-
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf-------i~v- 333 (606)
+..+.+|+||+|++.+++.|++.+..- +.++.+||+||+|||||++|+.+|+.+.++- -.+
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 345779999999999998888776642 3466789999999999999999999875421 111
Q ss_pred chhhHHH----------HHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVE----------LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~----------~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|..+.+ ...+.+...+|++.+.+.. ....|++|||+|.|. ....|.||..+
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naLLKtL 143 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNALLKTL 143 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHHHHh
Confidence 1111110 0012344567787777653 234699999999983 24678899988
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G~SgaDL 478 (606)
+. ....+++|.+|+.++.+++.+++ |+. .+.|..|+.++..+.++..+++.++.-+ ..+..++....| +.+++
T Consensus 144 Ee--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~a 217 (559)
T PRK05563 144 EE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDA 217 (559)
T ss_pred cC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 85 34456777777888999999998 663 6789999999999999988876665433 345667776665 88999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
.++++.+..+. ...|+.+++.+.
T Consensus 218 l~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 218 LSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHH
Confidence 99988876542 345787776554
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.62 E-value=1.7e-14 Score=151.38 Aligned_cols=208 Identities=18% Similarity=0.274 Sum_probs=134.0
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se 337 (606)
.+..+..+.+|+|++|++++++.++..+.. .+.|..+||+||||+|||++|++++++.+.+++++++++
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 345567788999999999998888777651 234667788999999999999999999999999999876
Q ss_pred HHHHHhhhhhHHHHHHHHHHH-cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 338 FVELFVGVGASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
. . .......+........ ...+.+|+|||+|.+.. ...+..+. ..++... .++.+|.+||.
T Consensus 79 -~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~---~~le~~~--~~~~~Ilt~n~ 140 (316)
T PHA02544 79 -C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLR---SFMEAYS--KNCSFIITANN 140 (316)
T ss_pred -c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHH---HHHHhcC--CCceEEEEcCC
Confidence 1 1 1111111222111111 13467999999998721 12233333 3344332 35678889999
Q ss_pred CCCccccccCCCccccccccCCCCHHHHHHHHHHHhc-------CCCCCCc-ccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007367 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR-------GKALAKD-VDFEKISRRTPGFTGADLQNLMNEAAIL 488 (606)
Q Consensus 417 p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~-------~~~l~~d-vdl~~La~~t~G~SgaDL~~Lv~eA~~~ 488 (606)
+..+++++++ ||. .+.++.|+.+++.++++.+++ +.+..-+ ..+..++....| |++.+++.....
T Consensus 141 ~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l~~~ 213 (316)
T PHA02544 141 KNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP----DFRRTINELQRY 213 (316)
T ss_pred hhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHH
Confidence 9999999999 774 789999999999887764322 1222212 234666665554 444554444333
Q ss_pred HHHhCCCCCCHHHHHH
Q 007367 489 AARRDLKEISKDEISD 504 (606)
Q Consensus 489 A~rr~~~~It~edl~~ 504 (606)
+. ...++.+++..
T Consensus 214 ~~---~~~i~~~~l~~ 226 (316)
T PHA02544 214 AS---TGKIDAGILSE 226 (316)
T ss_pred Hc---cCCCCHHHHHH
Confidence 32 24566655543
No 90
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=2.9e-14 Score=157.29 Aligned_cols=221 Identities=15% Similarity=0.238 Sum_probs=147.7
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhhHH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEFV 339 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se~~ 339 (606)
..+|++++--+.-...+..+..+..++. ...++++|||++|+|||+|++++++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~-------~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPG-------ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcC-------cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4789997743433323332333333332 123468999999999999999999854 5788999999988
Q ss_pred HHHhhhhhH---HHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 340 ELFVGVGAS---RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 340 ~~~~G~~~~---~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
..+...... .+..+.+.. ..+.+|+|||++.+.. .+..+..+..++..+. ...+.+|+++...
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~---------k~~~~e~lf~l~N~~~---~~~k~iIltsd~~ 249 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY---------KEKTNEIFFTIFNNFI---ENDKQLFFSSDKS 249 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC---------CHHHHHHHHHHHHHHH---HcCCcEEEECCCC
Confidence 776543221 222222222 3457999999998843 2233444545555443 2333455554445
Q ss_pred CC---CccccccCCCccc--cccccCCCCHHHHHHHHHHHhcCCCC---CCcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007367 417 PD---VLDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKAL---AKDVDFEKISRRTPGFTGADLQNLMNEAAIL 488 (606)
Q Consensus 417 p~---~LD~aLlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l---~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~ 488 (606)
|. .+++.|.+ ||. .++.+..|+.++|.+||+.+++..++ -++.-++.|+....| +++.|.++++++...
T Consensus 250 P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 250 PELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 54 35788888 774 58899999999999999999876543 233346777777775 999999999999866
Q ss_pred HHHhC-CCCCCHHHHHHHHHHH
Q 007367 489 AARRD-LKEISKDEISDALERI 509 (606)
Q Consensus 489 A~rr~-~~~It~edl~~Al~ri 509 (606)
+.... ...|+.+.+.+++..+
T Consensus 327 a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 327 SQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HhcccCCCCCCHHHHHHHHhhc
Confidence 65543 2679999999999876
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.61 E-value=1.5e-14 Score=153.62 Aligned_cols=210 Identities=22% Similarity=0.352 Sum_probs=146.1
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------ee-
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-------SC- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi-------~v- 333 (606)
+..+.+|+|++|++++++.|.+.+.. .+.|+.+||+||||+|||++|+++++.+.++-. .+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 45678999999999999888876642 234677899999999999999999998753210 00
Q ss_pred chhhHHHH-------Hh---hhhhHHHHHHHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVEL-------FV---GVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~~-------~~---G~~~~~vr~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|..+... +. ..+...++++++.+... ...||+|||+|.+.. ...+.|+..+
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------~~~~~Ll~~l 141 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------SAFNALLKTL 141 (355)
T ss_pred HHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------HHHHHHHHHH
Confidence 01111000 00 11334567777776532 235999999998831 3567788888
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~La~~t~G~SgaDL 478 (606)
+.. ...+++|.+|+.++.+.+.+++ |+ ..+++++|+.++..++++.++++.++.- +..+..++..+.| +.+.+
T Consensus 142 e~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a 215 (355)
T TIGR02397 142 EEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDA 215 (355)
T ss_pred hCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHH
Confidence 753 3456777788888888889988 66 4789999999999999998887665532 3345667777654 77888
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.+.++.+..+. ...|+.+++.+++
T Consensus 216 ~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 216 LSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred HHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 88877766543 2458888887654
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.61 E-value=4.6e-14 Score=141.41 Aligned_cols=202 Identities=15% Similarity=0.185 Sum_probs=134.1
Q ss_pred CCCcccccccc--chHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh
Q 007367 263 ETGVTFADVAG--ADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (606)
Q Consensus 263 ~~~~tf~DI~G--~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se 337 (606)
..+.+|+++++ .+.+...++++.. +.....+++|+||+|||||+||+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 45688999873 3344444444333 12234679999999999999999999875 67888999877
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC-
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR- 416 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~- 416 (606)
+.+.. .. .....+|+|||+|.+. ...+..+..++..+. .....++|.+++.
T Consensus 81 ~~~~~------------~~--~~~~~~liiDdi~~l~-----------~~~~~~L~~~~~~~~---~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLAF------------DF--DPEAELYAVDDVERLD-----------DAQQIALFNLFNRVR---AHGQGALLVAGPAA 132 (227)
T ss_pred hHHHH------------hh--cccCCEEEEeChhhcC-----------chHHHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 65321 11 1234699999999873 122334444444333 3334334444443
Q ss_pred CC--CccccccCCCcc--ccccccCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 007367 417 PD--VLDSALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADLQNLMNEAAILAAR 491 (606)
Q Consensus 417 p~--~LD~aLlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~La~~t~G~SgaDL~~Lv~eA~~~A~r 491 (606)
+. .+.+.|.+ || ...+.+++|+.+++..+++.+....++.-+. -++.|++.. ..+.+++.++++.....+..
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~-~gn~~~l~~~l~~l~~~~~~ 209 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHF-RRDMPSLMALLDALDRYSLE 209 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 32 34566776 66 5689999999999999998877655444333 367777754 45999999999986655544
Q ss_pred hCCCCCCHHHHHHHHH
Q 007367 492 RDLKEISKDEISDALE 507 (606)
Q Consensus 492 r~~~~It~edl~~Al~ 507 (606)
.+ ..|+...+.+++.
T Consensus 210 ~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 QK-RPVTLPLLREMLA 224 (227)
T ss_pred hC-CCCCHHHHHHHHh
Confidence 44 7899999888764
No 93
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.4e-14 Score=163.66 Aligned_cols=210 Identities=19% Similarity=0.216 Sum_probs=145.7
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------eee-
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf-------i~v- 333 (606)
+..+.+|+||+|++.+++.|+..+.. .+.|+.+||+||+|||||++|+++|+.+++.- -.+
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 35577999999999999888877653 24566789999999999999999999876421 110
Q ss_pred chhhHHH------------HHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHH
Q 007367 334 AASEFVE------------LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (606)
Q Consensus 334 s~se~~~------------~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~ 397 (606)
+|-.+.. .-...+...+|++.+.+.. ....|++|||+|.+. ....|.||.
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~NALLK 140 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFNALLK 140 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHHHHHH
Confidence 1111110 0001134455665555432 234599999999983 236788999
Q ss_pred HhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHhCCCCCHH
Q 007367 398 EMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGA 476 (606)
Q Consensus 398 eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~t~G~Sga 476 (606)
.|+. ....+++|.+|+.++.|.+.+++ |. .++.|..++.++..+.++..+++.+..-+.+ +..++... |.+.+
T Consensus 141 ~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s-~GdlR 214 (584)
T PRK14952 141 IVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG-GGSPR 214 (584)
T ss_pred HHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHH
Confidence 9985 34467888888888999999998 64 6789999999999999988887665543333 44455544 46899
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 477 DLQNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 477 DL~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
++.++++.+.... +...|+.+++.+.
T Consensus 215 ~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 215 DTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 9999998875432 2456777776654
No 94
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.6e-14 Score=161.88 Aligned_cols=209 Identities=21% Similarity=0.284 Sum_probs=143.6
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------eeee-c
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSC-A 334 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p-------fi~v-s 334 (606)
..+.+|+||+|++.+++.|...+..- +.+..+||+||+|+|||++|+++|+.+.+. .-.+ +
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 45679999999999998887666531 346678999999999999999999987641 1101 1
Q ss_pred hhhH--------HH--HHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc
Q 007367 335 ASEF--------VE--LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (606)
Q Consensus 335 ~se~--------~~--~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld 400 (606)
|..+ .+ .....+...++++.+.+.. ....|+||||+|.+. ....+.||..|+
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naLLK~LE 144 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNALLKTLE 144 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHHHHHHh
Confidence 1111 00 0011123445666655542 335699999999983 246778888888
Q ss_pred cCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHHH
Q 007367 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADLQ 479 (606)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G~SgaDL~ 479 (606)
.. ...+++|.+|+.+..+.+.+++ |+ ..++|..++.++..+.++..+++.++..+ ..+..++..+. .+.+++.
T Consensus 145 ep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR~al 218 (546)
T PRK14957 145 EP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSLRDAL 218 (546)
T ss_pred cC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHH
Confidence 53 3456677777778888888888 66 78999999999999888887766554433 33566666665 5889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 480 NLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 480 ~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
++++.+..+. + ..|+.+++.+++
T Consensus 219 nlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 219 SLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred HHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 9988876543 2 568887777643
No 95
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=9.5e-15 Score=170.58 Aligned_cols=209 Identities=22% Similarity=0.209 Sum_probs=144.3
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-----eechh
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-----SCAAS 336 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi-----~vs~s 336 (606)
+..+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|++||+.+.+.-- .-.|.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 45578999999999999888877653 234567899999999999999999999865210 01111
Q ss_pred hHHHHHhh---------------hhhHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHH
Q 007367 337 EFVELFVG---------------VGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (606)
Q Consensus 337 e~~~~~~G---------------~~~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~ 397 (606)
.+.....| .+...+|++.+.+. .....|+||||+|.|. ....|.||+
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~NaLLK 142 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFNALLK 142 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHHHHHH
Confidence 11111000 12344555544432 2445699999999993 246788888
Q ss_pred HhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHH
Q 007367 398 EMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGFTGA 476 (606)
Q Consensus 398 eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~La~~t~G~Sga 476 (606)
.|+... ..+++|.+|+.++.|.+.|++ |+ .++.|..++.++..++|+..+++.++..+. .+..|++...| +.+
T Consensus 143 ~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR 216 (824)
T PRK07764 143 IVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVR 216 (824)
T ss_pred HHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 888543 457777778888889899998 55 578999999999999999888766654333 35556666654 888
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007367 477 DLQNLMNEAAILAARRDLKEISKDEISD 504 (606)
Q Consensus 477 DL~~Lv~eA~~~A~rr~~~~It~edl~~ 504 (606)
++.++++.....+ +...|+.+++..
T Consensus 217 ~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 217 DSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred HHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 8888888765332 334577766554
No 96
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.61 E-value=6.3e-15 Score=173.79 Aligned_cols=199 Identities=23% Similarity=0.336 Sum_probs=140.4
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs 334 (606)
+-++++++|.++. +++++..|.... ..+++|+||||||||++|+++|..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~e---i~~~i~iL~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEE---IRRTIQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHH---HHHHHHHHhcCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3578999999986 566666554322 2468999999999999999999987 67888888
Q ss_pred hhhHH--HHHhhhhhHHHHHHHHHHH-cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 007367 335 ASEFV--ELFVGVGASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (606)
Q Consensus 335 ~se~~--~~~~G~~~~~vr~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVI 411 (606)
...+. ..+.|..+.+++.+|+.+. ...++||||||+|.+.+.... .++ ... .+.|...+ .++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~--~~~-~d~---~~~lkp~l----~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--DGA-MDA---GNMLKPAL----ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC--ccc-hhH---HHHhcchh----hcCCCeEE
Confidence 88776 3578888999999999864 457899999999999765422 111 122 22222222 35679999
Q ss_pred EeeCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC-----cccHHHHHHhCCCC-----CHH
Q 007367 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-----DVDFEKISRRTPGF-----TGA 476 (606)
Q Consensus 412 aaTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-----dvdl~~La~~t~G~-----Sga 476 (606)
++|+..+ .+|+++.| ||+ .|.++.|+.+++..||+.+........ +..+...+..+..| -+.
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pd 388 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPD 388 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCCh
Confidence 9999876 38999999 997 688999999999999987765433322 22233333344333 344
Q ss_pred HHHHHHHHHHHH
Q 007367 477 DLQNLMNEAAIL 488 (606)
Q Consensus 477 DL~~Lv~eA~~~ 488 (606)
....++.+++..
T Consensus 389 kAi~LiD~aaa~ 400 (857)
T PRK10865 389 KAIDLIDEAASS 400 (857)
T ss_pred HHHHHHHHHhcc
Confidence 555666666543
No 97
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.61 E-value=1.9e-14 Score=156.87 Aligned_cols=224 Identities=25% Similarity=0.296 Sum_probs=137.6
Q ss_pred ccccc-cccchHHHHHHHHHHHH-hcCchhhhh--cCC-CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 266 VTFAD-VAGADQAKLELQEVVDF-LKNPDKYTA--LGA-KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 266 ~tf~D-I~G~d~~K~eL~eiv~~-Lk~p~~~~~--lG~-~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
-.+++ |+|++++|+.|...+.. ++.-..... -.. ....++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 34554 89999999999766531 111100000 011 13468999999999999999999999999999999988764
Q ss_pred -HHhhhhhHH-HHHHHHHH----HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-----------
Q 007367 341 -LFVGVGASR-VRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----------- 403 (606)
Q Consensus 341 -~~~G~~~~~-vr~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~----------- 403 (606)
.|+|..... +..++..+ ....++||||||||.+..+++......+-..+.+++.||+.||+-.
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 466654333 34444322 2345789999999999876432211122223456777888877531
Q ss_pred CCCcEEEEEeeCCCC----------------------------------------------------CccccccCCCccc
Q 007367 404 GNSGVIVLAATNRPD----------------------------------------------------VLDSALLRPGRFD 431 (606)
Q Consensus 404 ~~~~ViVIaaTN~p~----------------------------------------------------~LD~aLlRpgRFd 431 (606)
.....++|.|+|-.. -+.|.++ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 112345555555410 0233444 4999
Q ss_pred cccccCCCCHHHHHHHHHH----Hh-------cCCCCC---CcccHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Q 007367 432 RQVTVDRPDVAGRVKILQV----HS-------RGKALA---KDVDFEKISRR--TPGFTGADLQNLMNEAAILAAR 491 (606)
Q Consensus 432 ~~I~v~~Pd~~eR~~IL~~----~l-------~~~~l~---~dvdl~~La~~--t~G~SgaDL~~Lv~eA~~~A~r 491 (606)
.++.|...+.++..+|+.. .+ ...++. .+.-+..|++. ..++-.|.|+.+++....-...
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 9999999999999998872 22 112221 12224556654 3345567777777766555444
No 98
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=1.6e-14 Score=156.52 Aligned_cols=187 Identities=21% Similarity=0.333 Sum_probs=128.8
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------eechhhHH
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-------SCAASEFV 339 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi-------~vs~se~~ 339 (606)
.|+||+|++.+++.|++.+..-+. .+...+.+.|+++||+||+|+|||++|+++|+.+.+.-- .-+|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999998875332 233455667899999999999999999999997754310 00111111
Q ss_pred H-----------HHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC
Q 007367 340 E-----------LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG 404 (606)
Q Consensus 340 ~-----------~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~ 404 (606)
. .-...+...+|++++.+.. ....|+||||+|.+.. ...|.||+.|+..
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEep-- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEEP-- 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhcC--
Confidence 0 0011234567888887764 2346999999999932 2457888888853
Q ss_pred CCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHH
Q 007367 405 NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 405 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL 478 (606)
..++++|.+|+.++.|.+.+++ |+ ..+.|++|+.++..++|.... ++ .......++..+.|..+..+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRAR 211 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHH
Confidence 3344555555558999999999 66 589999999999888776322 23 23345677888887665444
No 99
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.1e-14 Score=162.85 Aligned_cols=209 Identities=21% Similarity=0.315 Sum_probs=147.6
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------e-e
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-------S-C 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi-------~-v 333 (606)
+..+.+|+||+|++++++.|...+.. .+.++.+|||||+|+|||++|+++|+.+++.-- . -
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 34568999999999999888877653 245677899999999999999999998764210 0 0
Q ss_pred chhhHH--------H--HHhhhhhHHHHHHHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFV--------E--LFVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~--------~--~~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|.++. + .....+...++++.+.+... ...|++|||+|.+. ....|.||..|
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naLLk~L 143 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNALLKTL 143 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHHHHHH
Confidence 111111 0 00112344677777766532 23599999999983 24578899988
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL 478 (606)
+. ....+++|.+|+.++.|.+.+++ |+ .++.|..++.++....+...+++.++. .+..+..++....| +.+++
T Consensus 144 Ee--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~a 217 (576)
T PRK14965 144 EE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDS 217 (576)
T ss_pred Hc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 85 34467888888889999999998 65 588999999999888888877666554 33346667777765 88888
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
.++++.+..+. + ..|+.+++.+.
T Consensus 218 l~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 218 LSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 88888765543 2 34777776554
No 100
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.5e-14 Score=161.50 Aligned_cols=204 Identities=22% Similarity=0.268 Sum_probs=143.9
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------ 329 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p------------ 329 (606)
+..+.+|+||+|++.+++.|++.+..- +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 456789999999999998888777531 335678999999999999999999988653
Q ss_pred ------------eeeechhhHHHHHhhhhhHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHH
Q 007367 330 ------------FFSCAASEFVELFVGVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTIN 393 (606)
Q Consensus 330 ------------fi~vs~se~~~~~~G~~~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln 393 (606)
++++++.. ..+...++.+.+.+. .....||||||+|.+. ...++
T Consensus 78 sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~n 137 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFN 137 (624)
T ss_pred HHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHH
Confidence 22222110 112234444433332 2345699999999983 23568
Q ss_pred HHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCC
Q 007367 394 QLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPG 472 (606)
Q Consensus 394 ~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G 472 (606)
.||..|+.. ...+++|.+||.+..+.+.+++ |+ .++.|+.++.++..++|+..+.+.++. .+..+..|++.+.|
T Consensus 138 aLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 138 ALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888853 3467888888888888888888 66 478999999999999998877665543 33346667776664
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 473 FTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 473 ~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
+.+++.++++.+. ..+...|+.+++.+++
T Consensus 213 -dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 -SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred -CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 7788888877653 2244578888876554
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.59 E-value=8.1e-14 Score=141.19 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=133.6
Q ss_pred CCCccccccc-c-chHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh
Q 007367 263 ETGVTFADVA-G-ADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (606)
Q Consensus 263 ~~~~tf~DI~-G-~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se 337 (606)
....+|++.+ | ...+...++++.. .+ ....++||||+|||||+|++++++++ +..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3456899987 4 3344444443322 21 12478999999999999999999875 44556666655
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCc-EEEEEeeCC
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG-VIVLAATNR 416 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~-ViVIaaTN~ 416 (606)
+... ..++++.... ..+|+|||+|.+.. ....+..+..++..+-. +++ .+++++++.
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGDRP 141 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCCCC
Confidence 3321 1122222222 25899999999842 23344455555554321 233 355556666
Q ss_pred CCC---ccccccCCCccc--cccccCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 417 PDV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 417 p~~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
|.. +.+.|++ |+. .++.+..|+.+++.++++.++...++.- +.-++.|+.+..| +.+.+.++++.....+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~- 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS- 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH-
Confidence 655 5789999 664 7999999999999999998776555543 3336777887775 8999999999864333
Q ss_pred HhCCCCCCHHHHHHHH
Q 007367 491 RRDLKEISKDEISDAL 506 (606)
Q Consensus 491 rr~~~~It~edl~~Al 506 (606)
....+.||.+.+.+++
T Consensus 218 l~~~~~it~~~~k~~l 233 (235)
T PRK08084 218 ITAQRKLTIPFVKEIL 233 (235)
T ss_pred HhcCCCCCHHHHHHHH
Confidence 3334669998888775
No 102
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.58 E-value=2.8e-14 Score=168.56 Aligned_cols=202 Identities=21% Similarity=0.322 Sum_probs=145.2
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs 334 (606)
+-+++.++|.++. +++++..|... ..++++|+||||||||++++++|..+ +.+++.++
T Consensus 169 ~~~~~~~igr~~e---i~~~~~~l~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 169 EGKLDPVIGRDEE---IRRTIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCCcCCCcHHH---HHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 3478899999986 55555544332 23468999999999999999999875 67888888
Q ss_pred hhhHH--HHHhhhhhHHHHHHHHHHHc-CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 007367 335 ASEFV--ELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (606)
Q Consensus 335 ~se~~--~~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVI 411 (606)
...+. ..|.|..+.+++.+|+.+.. ..++||||||||.+.+.... .+. ....+.|...+ .+..+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~---~d~~~~Lk~~l----~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGA---MDAGNMLKPAL----ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cch---hHHHHHhchhh----hcCceEEE
Confidence 87775 45788888999999998865 45899999999999754321 111 12223333222 35679999
Q ss_pred EeeCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC-----cccHHHHHHhCCCC-----CHH
Q 007367 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-----DVDFEKISRRTPGF-----TGA 476 (606)
Q Consensus 412 aaTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-----dvdl~~La~~t~G~-----Sga 476 (606)
++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+........ +..+...+..+.+| -+.
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPd 383 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPD 383 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCch
Confidence 9999764 47999999 996 589999999999999997765544332 33455566666554 345
Q ss_pred HHHHHHHHHHHHHHH
Q 007367 477 DLQNLMNEAAILAAR 491 (606)
Q Consensus 477 DL~~Lv~eA~~~A~r 491 (606)
-...++++|+.....
T Consensus 384 kAidlld~a~a~~~~ 398 (852)
T TIGR03346 384 KAIDLIDEAAARIRM 398 (852)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566788888766544
No 103
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.58 E-value=2.7e-14 Score=158.03 Aligned_cols=197 Identities=23% Similarity=0.335 Sum_probs=151.9
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------eee-
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf-------i~v- 333 (606)
++.+.+|+|++|++.+...|++.+..-+..+ +.||+||.|||||++||.+|+.+++.- -.|
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri~h-----------AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRIAH-----------AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcchh-----------hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 3557899999999999999999888655444 459999999999999999999886642 111
Q ss_pred chh--------hHHH--HHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AAS--------EFVE--LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~s--------e~~~--~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|. ++++ .-...+...+|++.+++.. ..+.|++|||+|.|. .+..|.||..+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTL 143 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTL 143 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhccc
Confidence 111 1111 1122356778888888753 345699999999983 46899999999
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccH-HHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF-EKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl-~~La~~t~G~SgaDL 478 (606)
+ .+..+|++|.+|..++.++..+++ |+ .++.|..-+.++....|...+.+.++..+.+. ..+++... .|.+|.
T Consensus 144 E--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~-Gs~RDa 217 (515)
T COG2812 144 E--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE-GSLRDA 217 (515)
T ss_pred c--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC-CChhhH
Confidence 9 566789999999999999999998 55 46779999999999999999988887766654 55555555 599999
Q ss_pred HHHHHHHHHHH
Q 007367 479 QNLMNEAAILA 489 (606)
Q Consensus 479 ~~Lv~eA~~~A 489 (606)
.++++.+....
T Consensus 218 lslLDq~i~~~ 228 (515)
T COG2812 218 LSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHcc
Confidence 99999987664
No 104
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.5e-15 Score=164.25 Aligned_cols=220 Identities=25% Similarity=0.358 Sum_probs=152.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH--------
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-------- 340 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~-------- 340 (606)
+|=.|++++|+++.|.+.-.+.... +. ..-++|+||||+|||+|++.||+.+|.+|+.++.....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~---~k---GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK---LK---GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc---CC---CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4568999999999887665332211 11 135899999999999999999999999999998765432
Q ss_pred -HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-------------CCC
Q 007367 341 -LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-------------GNS 406 (606)
Q Consensus 341 -~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-------------~~~ 406 (606)
.|+|....++-+-+.+|....| +++|||||.++..-. ++ --..||+.+|--. .=+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-----GD-----PaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-----GD-----PASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC-----CC-----hHHHHHhhcCHhhcCchhhccccCccchh
Confidence 4788888888888999998888 899999999964311 11 2234666655321 124
Q ss_pred cEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHh-----cCCCCCC------cccHHHHHHhCCCCCH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS-----RGKALAK------DVDFEKISRRTPGFTG 475 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l-----~~~~l~~------dvdl~~La~~t~G~Sg 475 (606)
+|++|+|.|..+.++..|+. |. .+|++.-++.+|..+|.+.|+ +..++.. |..+..+.+.+..-+|
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 69999999999999999999 88 699999999999999999886 3333331 2224444443321121
Q ss_pred -----HHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHHHH
Q 007367 476 -----ADLQNLMNEAAILAARRDLK---EISKDEISDALER 508 (606)
Q Consensus 476 -----aDL~~Lv~eA~~~A~rr~~~---~It~edl~~Al~r 508 (606)
++|..+|+.++..-...... .|+..++.+-+..
T Consensus 543 VR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 543 VRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 45666666665554443333 3555566555443
No 105
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=6.9e-14 Score=158.66 Aligned_cols=211 Identities=19% Similarity=0.255 Sum_probs=151.2
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee--------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC-------- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v-------- 333 (606)
+..+.+|+||+|++.+++.|...+.. .+.|.++||+||+|+|||++|+++|+.+.+.....
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 45678999999999999888876653 24577899999999999999999999886532111
Q ss_pred -----chhhHHHH----------HhhhhhHHHHHHHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHH
Q 007367 334 -----AASEFVEL----------FVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (606)
Q Consensus 334 -----s~se~~~~----------~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~ 394 (606)
+|..+.+. -...+...+|++++.++.. ...|++|||+|.+. ....|.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~na 151 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNA 151 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHH
Confidence 11111110 0012345678888777532 34699999999983 245788
Q ss_pred HHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCC
Q 007367 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGF 473 (606)
Q Consensus 395 LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~La~~t~G~ 473 (606)
||..|+... ..+++|.+|+.++.+.+.+++ |+ ..+.|..++.++....++..+++.+..-+ ..+..|+..+.|
T Consensus 152 LLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 152 LLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred HHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888543 356666777888888888888 66 57899999999999999988876655433 345666666654
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007367 474 TGADLQNLMNEAAILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 474 SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ 507 (606)
+.+++.++++.+..+ +...|+.+++.+.+.
T Consensus 226 dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 226 SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 899999998887544 235689888886653
No 106
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=4.4e-14 Score=161.68 Aligned_cols=211 Identities=22% Similarity=0.327 Sum_probs=150.7
Q ss_pred cCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee---eechhh
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF---SCAASE 337 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi---~vs~se 337 (606)
.+..+.+|+||+|++.+++.|+..+..- +.++.+||+||+|+|||++|+++|+.+.++-. .-.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 3456789999999999998888777531 34667899999999999999999998865321 112222
Q ss_pred HHH---H----H-----hhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc
Q 007367 338 FVE---L----F-----VGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (606)
Q Consensus 338 ~~~---~----~-----~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~ 401 (606)
+.. . + ...+...+|++.+.+.. ....|++|||+|.+.. ...+.||..|+.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEE 144 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEE 144 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhc
Confidence 111 0 0 01234557787777664 3446999999999832 367888998885
Q ss_pred CCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHHHHHH
Q 007367 402 FSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADLQN 480 (606)
Q Consensus 402 ~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~La~~t~G~SgaDL~~ 480 (606)
....+++|.+|+.++.|.+.+++ |+ .++.|.+++.++..++++..+.+.++..+. .+..++..+.| +.+++.+
T Consensus 145 --PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Als 218 (725)
T PRK07133 145 --PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALS 218 (725)
T ss_pred --CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 34467778888889999999998 66 478999999999999998877665554333 35666766664 8888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 481 LMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 481 Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
+++.+..+. ...|+.+++.+.+
T Consensus 219 lLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 219 IAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHhc----cCCCCHHHHHHHH
Confidence 888765442 2348888776643
No 107
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.9e-14 Score=150.73 Aligned_cols=211 Identities=18% Similarity=0.308 Sum_probs=143.6
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH---
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF--- 338 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~--- 338 (606)
+..+.+|+||+|++.+++.+.+.+.. .+.|.++|||||||+|||++|+++++....+.....+..+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 45678999999999998777766642 1346789999999999999999999987653221111100
Q ss_pred ---HHHHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 007367 339 ---VELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (606)
Q Consensus 339 ---~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVI 411 (606)
.+.....+...++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++.. ....++|
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~--~~~~~~I 142 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEP--PAHAIFI 142 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCC--CCceEEE
Confidence 000111223567777776643 2346999999998732 3467777777652 2345666
Q ss_pred EeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 412 AATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 412 aaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
.+|+.+..+.+++.+ |+ ..++++.|+.++...++...+.+.++. .+..++.++..+.| +.+.+.+.++....++
T Consensus 143 l~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~- 217 (367)
T PRK14970 143 LATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC- 217 (367)
T ss_pred EEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-
Confidence 667777888889988 55 468999999999999998877666653 34456777777654 7777777777665443
Q ss_pred HhCCCCCCHHHHHHHHH
Q 007367 491 RRDLKEISKDEISDALE 507 (606)
Q Consensus 491 rr~~~~It~edl~~Al~ 507 (606)
+.. |+.+++++.+.
T Consensus 218 --~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 --GKN-ITRQAVTENLN 231 (367)
T ss_pred --CCC-CCHHHHHHHhC
Confidence 323 78777766543
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.8e-14 Score=152.18 Aligned_cols=214 Identities=18% Similarity=0.272 Sum_probs=145.4
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee----------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF---------- 331 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi---------- 331 (606)
...+.+|+||+|++.+++.|+..+.. .+.|.++||+||||+|||++|+++|+++.+.-.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 35578999999999999888776652 245778999999999999999999999866210
Q ss_pred eec------hhhHHH-------HHhh---hhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHH
Q 007367 332 SCA------ASEFVE-------LFVG---VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQT 391 (606)
Q Consensus 332 ~vs------~se~~~-------~~~G---~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 391 (606)
.-. |..+.. .+.+ .+...++++.+.+.. ....|+||||+|.+.. ..
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------~~ 143 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------AA 143 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------------HH
Confidence 001 111110 0111 123556666655532 2235999999999832 34
Q ss_pred HHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhC
Q 007367 392 INQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRT 470 (606)
Q Consensus 392 Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t 470 (606)
.+.|+..++.. ....++|.+|+.+..+.+.+.+ |+ .++++..++.++..+.++..++..+.. .+..+..|+..+
T Consensus 144 ~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 144 FNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 56778887743 3345666666777788888887 66 478999999999988888877655542 333466777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Q 007367 471 PGFTGADLQNLMNEAAILAAR-RDLKEISKDEISDAL 506 (606)
Q Consensus 471 ~G~SgaDL~~Lv~eA~~~A~r-r~~~~It~edl~~Al 506 (606)
.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 64 888888888877666532 234578888887655
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=6.5e-14 Score=157.55 Aligned_cols=210 Identities=17% Similarity=0.256 Sum_probs=145.0
Q ss_pred cCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-----eeech
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-----FSCAA 335 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf-----i~vs~ 335 (606)
.+..+.+|+||+|++.+++.|.+.+.. .+.|+++||+||+|+|||++|+++|+.+.+.- ..-.|
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 345678999999999998888776542 24467899999999999999999999875310 00111
Q ss_pred hhHH-----------H--HHhhhhhHHHHHHHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH
Q 007367 336 SEFV-----------E--LFVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (606)
Q Consensus 336 se~~-----------~--~~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e 398 (606)
..+. + .....+...+|.+.+.+... ...|++|||+|.+.. ...+.||..
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaLLKt 142 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNALLKT 142 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHHHHH
Confidence 1110 0 00012334577777665532 235999999999831 356788888
Q ss_pred hccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHH
Q 007367 399 MDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGAD 477 (606)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaD 477 (606)
|+. ....+++|.+|+.+..|.+.+++ |+ .++.|..++.++....++..+.+.+.. .+..+..++..+.| +.++
T Consensus 143 LEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~ 216 (605)
T PRK05896 143 LEE--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRD 216 (605)
T ss_pred HHh--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHH
Confidence 884 33457777888888999999998 66 479999999999999998877655542 33346667777665 7888
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 478 LQNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 478 L~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
+.++++.+..+. + ..|+.+++.+.
T Consensus 217 AlnlLekL~~y~---~-~~It~e~V~el 240 (605)
T PRK05896 217 GLSILDQLSTFK---N-SEIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 888888754432 3 23888776663
No 110
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.56 E-value=1.2e-13 Score=141.93 Aligned_cols=196 Identities=20% Similarity=0.228 Sum_probs=137.0
Q ss_pred cccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------Ce
Q 007367 257 KFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV------PF 330 (606)
Q Consensus 257 ~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~------pf 330 (606)
..+..+..+.+|+|++|++.+.+.|...+.. +.. -++|||||||||||+.|+++|+++.. .+
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~~l-----------p~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-RIL-----------PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-cCC-----------ceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 3455667889999999999999999887765 221 24799999999999999999999866 23
Q ss_pred eeechhhHHHHHhhhhhHHHHHHHHHHHcC------CC----eEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc
Q 007367 331 FSCAASEFVELFVGVGASRVRDLFEKAKSK------AP----CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (606)
Q Consensus 331 i~vs~se~~~~~~G~~~~~vr~lF~~A~~~------aP----~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld 400 (606)
.+.+.++..+.-++ ..++. -|.+.... .| .|++|||.|.+. ....+.|...|+
T Consensus 92 l~lnaSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE 154 (346)
T KOG0989|consen 92 LELNASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTME 154 (346)
T ss_pred hhhcccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHh
Confidence 44455544332111 11111 23332221 12 599999999994 246677888898
Q ss_pred cCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHhCCCCCHHHHH
Q 007367 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQ 479 (606)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~t~G~SgaDL~ 479 (606)
.+.. .+++|..||..+.|...+.+ |. ..+.|+..+.+.....|+..+.+.++.-|.+ +..++....| +-++..
T Consensus 155 ~~s~--~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 155 DFSR--TTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred cccc--ceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 7554 46788889999999999998 66 4667777777788888888887777665544 5556665554 777777
Q ss_pred HHHHHHHH
Q 007367 480 NLMNEAAI 487 (606)
Q Consensus 480 ~Lv~eA~~ 487 (606)
..++.+..
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 77766654
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.56 E-value=6.4e-14 Score=165.03 Aligned_cols=201 Identities=21% Similarity=0.310 Sum_probs=144.6
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeech
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAA 335 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs~ 335 (606)
-.+++|+|.++..+.+.+++. . +.+++++|+||||||||++|+.+|.+. +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~---r---------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG---R---------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc---c---------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 468899999998666655543 2 234578999999999999999999976 468999999
Q ss_pred hhHH--HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 336 SEFV--ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 336 se~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
+.+. ..|.|+.+.+++.+|+.+....++||||||||.+....+. .+... ..+-|...+. ++.+.+|++
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~g~~~---~a~lLkp~l~----rg~l~~Iga 313 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---EGAID---AANILKPALA----RGELQCIGA 313 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---CCccc---HHHHhHHHHh----CCCcEEEEe
Confidence 8877 3577888999999999998888899999999999765432 11111 2222222332 567899999
Q ss_pred eCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhc----CCCC-CCcccHHHHHHhCCCCC-----HHHH
Q 007367 414 TNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR----GKAL-AKDVDFEKISRRTPGFT-----GADL 478 (606)
Q Consensus 414 TN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~----~~~l-~~dvdl~~La~~t~G~S-----gaDL 478 (606)
|+..+ ..|+++.+ ||. .|.++.|+.++...|++.... ...+ ..+..+..++..+.+|. +.-.
T Consensus 314 Tt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdka 390 (821)
T CHL00095 314 TTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKA 390 (821)
T ss_pred CCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHH
Confidence 99764 47899999 996 579999999999999875432 1222 23334666666666653 4455
Q ss_pred HHHHHHHHHHHHH
Q 007367 479 QNLMNEAAILAAR 491 (606)
Q Consensus 479 ~~Lv~eA~~~A~r 491 (606)
..++++|+.....
T Consensus 391 idlld~a~a~~~~ 403 (821)
T CHL00095 391 IDLLDEAGSRVRL 403 (821)
T ss_pred HHHHHHHHHHHHh
Confidence 6788887765544
No 112
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.56 E-value=4.7e-14 Score=147.25 Aligned_cols=224 Identities=26% Similarity=0.395 Sum_probs=143.2
Q ss_pred CccccccccchHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---eeeechhhH
Q 007367 265 GVTFADVAGADQAKLE---LQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP---FFSCAASEF 338 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~e---L~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p---fi~vs~se~ 338 (606)
+.+++|.+|++++..+ |+.+++.-+- .+++||||||||||+|||.|+....-+ |+++++..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~~i------------pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQNRI------------PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN- 200 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcCCC------------CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-
Confidence 5689999999987644 3333332221 257999999999999999999987665 88887643
Q ss_pred HHHHhhhhhHHHHHHHHHHHc-----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 339 VELFVGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
.+.+.+|++|+++++ ....|||||||+++.+.. ...||-..+ ++.|++|++
T Consensus 201 ------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ--------------QD~fLP~VE----~G~I~lIGA 256 (554)
T KOG2028|consen 201 ------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ--------------QDTFLPHVE----NGDITLIGA 256 (554)
T ss_pred ------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh--------------hhcccceec----cCceEEEec
Confidence 344678999999875 345799999999995432 122444433 566777776
Q ss_pred eC-CCC-CccccccCCCccccccccCCCCHHHHHHHHHHHhc------C--CCCCC------cccHHHHHHhCCCCCHHH
Q 007367 414 TN-RPD-VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR------G--KALAK------DVDFEKISRRTPGFTGAD 477 (606)
Q Consensus 414 TN-~p~-~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~------~--~~l~~------dvdl~~La~~t~G~SgaD 477 (606)
|. .|. .|..+|++ |+ +++.+.....+....||.+... + -++.. +--++.++..+.|-.-+.
T Consensus 257 TTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 257 TTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 64 444 68999999 44 5678888888888888886332 1 12221 222677888888743333
Q ss_pred HHHHHHHHHHHH-HHhC---CCCCCHHHHHHHHHHHHcCCccccccchhhHHHHHHHHH
Q 007367 478 LQNLMNEAAILA-ARRD---LKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHE 532 (606)
Q Consensus 478 L~~Lv~eA~~~A-~rr~---~~~It~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hE 532 (606)
.|.++.++... .+.+ ...++.+|+.+.+.+--.-.++ .-.+.-..+-|+|.
T Consensus 334 -LN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr---~Ge~HYntISA~HK 388 (554)
T KOG2028|consen 334 -LNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDR---AGEEHYNTISALHK 388 (554)
T ss_pred -HHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecc---cchhHHHHHHHHHH
Confidence 34444443232 3333 3468999999998764321111 12223345566775
No 113
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.56 E-value=2.4e-13 Score=146.66 Aligned_cols=227 Identities=19% Similarity=0.295 Sum_probs=163.6
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se 337 (606)
.+..+|++++.-+.-.....-...+...+.. .-..++||||.|.|||+|++|+++++ +..+++++..+
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~ 153 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSED 153 (408)
T ss_pred CCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHH
Confidence 4578999987666655444444444444322 23458999999999999999998876 34689999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
|...++......-.+-|+.-. .-.+++||+|+.+..+. ..+..+-.+++. +...++-+|+.+...|
T Consensus 154 f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~---------~~qeefFh~FN~---l~~~~kqIvltsdr~P 219 (408)
T COG0593 154 FTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE---------RTQEEFFHTFNA---LLENGKQIVLTSDRPP 219 (408)
T ss_pred HHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh---------hHHHHHHHHHHH---HHhcCCEEEEEcCCCc
Confidence 988777655444444566555 34699999999996432 223333333333 3334556777777777
Q ss_pred CC---ccccccCCCcccc--ccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 007367 418 DV---LDSALLRPGRFDR--QVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQNLMNEAAILAAR 491 (606)
Q Consensus 418 ~~---LD~aLlRpgRFd~--~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~t~G~SgaDL~~Lv~eA~~~A~r 491 (606)
.. +.+.|.+ ||.. ++.+.+||.+.|..||+..+...++.-+.+ ...++.... -+.++|..+++.....+..
T Consensus 220 ~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~ 296 (408)
T COG0593 220 KELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALF 296 (408)
T ss_pred hhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHh
Confidence 75 4588988 7665 889999999999999999887666653333 566777766 4899999999999888877
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCc
Q 007367 492 RDLKEISKDEISDALERIIAGPE 514 (606)
Q Consensus 492 r~~~~It~edl~~Al~ri~~g~e 514 (606)
.++ .||.+.+.+++.......+
T Consensus 297 ~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 297 TKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred cCc-cCcHHHHHHHHHHhhcccc
Confidence 764 8999999999998876555
No 114
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.1e-13 Score=156.32 Aligned_cols=210 Identities=19% Similarity=0.266 Sum_probs=146.6
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------eeee-
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSC- 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p-------fi~v- 333 (606)
+..+.+|+||+|++.+++.|+..+.. .+.++.+|||||+|+|||++|+++|+.+.+. .-.+
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 34577999999999999888777652 1346779999999999999999999988652 1111
Q ss_pred chhhHHHH-------Hhh---hhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVEL-------FVG---VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~~-------~~G---~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|-.+... +.| .+...++++.+.+.. ....|++|||+|.+. ...+|.||..+
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK~L 143 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLKTI 143 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHHhh
Confidence 11111110 011 123455665544432 345699999999983 24678889888
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL 478 (606)
+. ....+++|.+|+.++.|.+++++ |+. .+.|.+++.++..++++..++..++. .+..+..|+....| +.+++
T Consensus 144 Ee--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~a 217 (563)
T PRK06647 144 EE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDA 217 (563)
T ss_pred cc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 84 34567777777888889999998 664 68899999999999998887655544 23345667776665 88999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.++++.+..++ ...|+.+++.+.+
T Consensus 218 lslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 218 YTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 99988775442 2458887776653
No 115
>PRK08727 hypothetical protein; Validated
Probab=99.55 E-value=2.3e-13 Score=137.69 Aligned_cols=209 Identities=19% Similarity=0.234 Sum_probs=135.7
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~ 339 (606)
.+..+|++.++.+.. .+..+...... .....++|+||+|||||+|++++++++ +...++++..++.
T Consensus 13 ~~~~~f~~f~~~~~n--~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 13 PSDQRFDSYIAAPDG--LLAQLQALAAG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CCcCChhhccCCcHH--HHHHHHHHHhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 446789998765543 12221111111 123459999999999999999997764 6677777776644
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
.. +.+.++... ...+|+|||+|.+..+ ...+..+..++..+. .+..-+|+.+...|..
T Consensus 82 ~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~---------~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 82 GR--------LRDALEALE--GRSLVALDGLESIAGQ---------REDEVALFDFHNRAR---AAGITLLYTARQMPDG 139 (233)
T ss_pred hh--------HHHHHHHHh--cCCEEEEeCcccccCC---------hHHHHHHHHHHHHHH---HcCCeEEEECCCChhh
Confidence 32 233444443 3359999999988432 223344445555443 2222344444456665
Q ss_pred c---cccccCCCcc--ccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC
Q 007367 420 L---DSALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (606)
Q Consensus 420 L---D~aLlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~ 493 (606)
+ ++.|++ || ..++.++.|+.+++.+|++.++...++. ++..++.|++++.| +.+.+.++++.....+...+
T Consensus 140 l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~ 216 (233)
T PRK08727 140 LALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK 216 (233)
T ss_pred hhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC
Confidence 4 789998 76 5688999999999999999877654443 33346778888774 77778777887665455444
Q ss_pred CCCCCHHHHHHHHHH
Q 007367 494 LKEISKDEISDALER 508 (606)
Q Consensus 494 ~~~It~edl~~Al~r 508 (606)
+.||.+.+.+.+..
T Consensus 217 -~~it~~~~~~~l~~ 230 (233)
T PRK08727 217 -RRVTVPFLRRVLEE 230 (233)
T ss_pred -CCCCHHHHHHHHhh
Confidence 57999998887754
No 116
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.55 E-value=1.5e-13 Score=157.20 Aligned_cols=216 Identities=17% Similarity=0.192 Sum_probs=141.9
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCce-EEEEcCCCChHHHHHHHHHHhc----------CCCeeeechh
Q 007367 269 ADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKG-CLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAAS 336 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~g-VLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs~s 336 (606)
+.|.|.++..++|..++.. +.. ..|.+ ++|+|+||||||++++.+.+++ .+.+++++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4566777666666665543 321 22434 5699999999999999997765 2567899995
Q ss_pred hHHHH----------Hhhh-------hhHHHHHHHHHHH--cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHH
Q 007367 337 EFVEL----------FVGV-------GASRVRDLFEKAK--SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (606)
Q Consensus 337 e~~~~----------~~G~-------~~~~vr~lF~~A~--~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~ 397 (606)
.+... +.+. ....+..+|.... ....+||+|||||.|..+ .+..|..|+.
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHH
Confidence 43211 1011 1234556666552 234579999999999532 2456666666
Q ss_pred HhccCCCCCcEEEEEeeCC---CCCccccccCCCcccc-ccccCCCCHHHHHHHHHHHhcCC-CCCCcccHHHHHHhCC-
Q 007367 398 EMDGFSGNSGVIVLAATNR---PDVLDSALLRPGRFDR-QVTVDRPDVAGRVKILQVHSRGK-ALAKDVDFEKISRRTP- 471 (606)
Q Consensus 398 eld~~~~~~~ViVIaaTN~---p~~LD~aLlRpgRFd~-~I~v~~Pd~~eR~~IL~~~l~~~-~l~~dvdl~~La~~t~- 471 (606)
... .....++||+++|. ++.|++.+++ ||.. .+.|++++.+++.+||+..+... ....+..+..+|+...
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 544 23457899999996 4567888888 5543 58889999999999999888753 2223333556666333
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007367 472 -GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (606)
Q Consensus 472 -G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~ 511 (606)
+...|....+|..|... ++...|+.+|+.+|++++..
T Consensus 971 ~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 23556666677777654 34458999999999987643
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=99.55 E-value=2e-13 Score=138.24 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=137.4
Q ss_pred CCCccccccccchHHHHHHHHHHHHh-cCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFL-KNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF 338 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~L-k~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~ 338 (606)
.+..+|++.+.... ....+.+..+ .... ....+.++||||+|+|||+|++++++++ +..+++++..++
T Consensus 13 ~~~~tfdnF~~~~~--~~a~~~~~~~~~~~~------~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 13 RDDATFANYYPGAN--AAALGYVERLCEADA------GWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CCcccccccCcCCh--HHHHHHHHHHhhccc------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 45678999873322 2233333221 1111 1123678999999999999999998764 678888998887
Q ss_pred HHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
.... ..+.+..+.. .+|+|||++.+..+ ...+..+..+++. +..++..++|+++..|.
T Consensus 85 ~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~---------~~~~~~Lf~l~n~---~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 85 LDRG--------PELLDNLEQY--ELVCLDDLDVIAGK---------ADWEEALFHLFNR---LRDSGRRLLLAASKSPR 142 (234)
T ss_pred Hhhh--------HHHHHhhhhC--CEEEEechhhhcCC---------hHHHHHHHHHHHH---HHhcCCEEEEeCCCCHH
Confidence 6531 2233333332 58999999988422 2223344444443 33445567777776665
Q ss_pred C---ccccccCCCcc--ccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007367 419 V---LDSALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 419 ~---LD~aLlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
. +.+.|++ || ..++.+..|+.++|.++++..+...++. ++.-++.|+++..+ +.+.+.++++.....+. .
T Consensus 143 ~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l-~ 218 (234)
T PRK05642 143 ELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASL-Q 218 (234)
T ss_pred HcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH-H
Confidence 3 3688888 76 4678889999999999999666554443 23346777777774 99999999998865443 3
Q ss_pred CCCCCCHHHHHHHH
Q 007367 493 DLKEISKDEISDAL 506 (606)
Q Consensus 493 ~~~~It~edl~~Al 506 (606)
..+.||...+++++
T Consensus 219 ~~~~it~~~~~~~L 232 (234)
T PRK05642 219 AQRKLTIPFLKETL 232 (234)
T ss_pred cCCcCCHHHHHHHh
Confidence 44669988888775
No 118
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1e-13 Score=154.13 Aligned_cols=210 Identities=18% Similarity=0.260 Sum_probs=145.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------Ceee-e
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFS-C 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~-------pfi~-v 333 (606)
...+.+|+|++|++.+++.|+..+..- +.++.+|||||+|+|||++|+.+|..+++ |.-. .
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 345679999999999998887776531 34566899999999999999999998764 1111 1
Q ss_pred chhhHHH-----H-----HhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVE-----L-----FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~-----~-----~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|..+.. . ....+...+|.+.+.+.. ..+.|++|||+|.+.. ...+.||..+
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------~a~naLLk~L 143 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------EAFNALLKTL 143 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------HHHHHHHHHH
Confidence 1211111 0 011233446666655543 3456999999998832 3567788888
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~La~~t~G~SgaDL 478 (606)
+.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++...+++..++..++..+. .+..++..+. .+.+++
T Consensus 144 Eep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~-G~lr~a 217 (486)
T PRK14953 144 EEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE-GGMRDA 217 (486)
T ss_pred hcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHH
Confidence 753 3345666667778888888888 663 78999999999999999988776654333 3566676666 478888
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.++++.+... +...|+.+++.+++
T Consensus 218 l~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 218 ASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 8888887644 23468888877654
No 119
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.3e-13 Score=153.93 Aligned_cols=209 Identities=21% Similarity=0.267 Sum_probs=145.6
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------eee-e
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFS-C 333 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p-------fi~-v 333 (606)
+..+.+|+||+|++.+++.|+..+.. .+.|+.+|||||+|+|||++|+++|+.+.++ ... -
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 45678999999999999888877653 1356678999999999999999999987421 100 0
Q ss_pred chhhHHHH----------HhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVEL----------FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~~----------~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|..+.+. -...+...+|++.+.... ....|++|||+|.+. ....|.||..|
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NALLK~L 141 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNALLKTL 141 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHHHHH
Confidence 11111100 001123567776665432 123599999999983 24677888988
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~La~~t~G~SgaDL 478 (606)
+.. ...+.+|.+|+.+..|.+.+++ |. .+++|..++.++..+.++..++..++.- +..+..|+....| +.+++
T Consensus 142 EEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~a 215 (535)
T PRK08451 142 EEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDT 215 (535)
T ss_pred hhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 864 3456667777888999999999 64 5889999999999998888777655543 3346667776664 89999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
.++++.+..++ ...|+.+++.+.
T Consensus 216 lnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 216 LTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHhc----CCCCCHHHHHHH
Confidence 99998877654 245777766544
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.54 E-value=2e-13 Score=137.91 Aligned_cols=191 Identities=20% Similarity=0.347 Sum_probs=139.8
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF 338 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~ 338 (606)
...+.+++++|++.+|+.|.+-... +.. .+.+++||||++|||||+++|++.++. |..++++...++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 3478999999999999998876654 432 456789999999999999999998865 788999988776
Q ss_pred HHHHhhhhhHHHHHHHHHHHc-CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC--CCCCcEEEEEeeC
Q 007367 339 VELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF--SGNSGVIVLAATN 415 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~--~~~~~ViVIaaTN 415 (606)
.. +.++++..+. ..+-|||+|++. + ++.+.....|-..|||- ....+|++.+|+|
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F------------e~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F------------EEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C------------CCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 53 4455665553 345799999873 2 12223445566666664 3456899999999
Q ss_pred CCCCccccccC---------------------CCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-c----HHHHHHh
Q 007367 416 RPDVLDSALLR---------------------PGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-D----FEKISRR 469 (606)
Q Consensus 416 ~p~~LD~aLlR---------------------pgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-d----l~~La~~ 469 (606)
+...+++.+.. ..||..+|.|..||.++-.+|++.+++..++..+. + ....+..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 87655433221 13899999999999999999999999877765442 2 3445556
Q ss_pred CCCCCHHHHHHHHHH
Q 007367 470 TPGFTGADLQNLMNE 484 (606)
Q Consensus 470 t~G~SgaDL~~Lv~e 484 (606)
-.|.||+-..+.++.
T Consensus 230 rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 230 RGGRSGRTARQFIDD 244 (249)
T ss_pred cCCCCHHHHHHHHHH
Confidence 667888877777664
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.54 E-value=1.2e-13 Score=138.68 Aligned_cols=202 Identities=22% Similarity=0.354 Sum_probs=125.8
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhhH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEF 338 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se~ 338 (606)
+..||++.+--+.-+..+.-+.....++.. .-..++||||+|+|||+|.++++++. +..++++++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 467999986333333333222222333221 12358999999999999999998874 678999999999
Q ss_pred HHHHhhhhh-HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 339 VELFVGVGA-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 339 ~~~~~G~~~-~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
...+..... ..+.++.+..+ ...+|+||++|.+..+ ...+..+..++.. +..+++.+|+++...|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~---------~~~q~~lf~l~n~---~~~~~k~li~ts~~~P 141 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK---------QRTQEELFHLFNR---LIESGKQLILTSDRPP 141 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH---------HHHHHHHHHHHHH---HHHTTSEEEEEESS-T
T ss_pred HHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc---------hHHHHHHHHHHHH---HHhhCCeEEEEeCCCC
Confidence 877654332 22333333333 3469999999999432 2234444444444 3344556677776666
Q ss_pred CC---ccccccCCCcccc--ccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007367 418 DV---LDSALLRPGRFDR--QVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 418 ~~---LD~aLlRpgRFd~--~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
.. +++.|.+ ||.. ++.+..||.++|.+|++..+...++.-+.+ ++.|++... -+.++|..++++...++
T Consensus 142 ~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 142 SELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred ccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 64 5677888 6655 889999999999999999987776654444 566777766 48999999999876554
No 122
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.9e-13 Score=150.83 Aligned_cols=210 Identities=22% Similarity=0.295 Sum_probs=142.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe---------ee
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF---------FS 332 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf---------i~ 332 (606)
+..+.+|+||+|++.++..|+..+.. .+.|..+|||||+|+|||++|+++|+.+.+.- ..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 34568999999999998888776653 24567899999999999999999999875421 01
Q ss_pred echhhHHHH-------Hhh---hhhHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH
Q 007367 333 CAASEFVEL-------FVG---VGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (606)
Q Consensus 333 vs~se~~~~-------~~G---~~~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e 398 (606)
.+|..+... +.| .+...++.+.+... .....|++|||+|.+.. ...+.|+..
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------~~~n~LLk~ 144 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------EAFNSLLKT 144 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------------HHHHHHHHH
Confidence 111111100 011 12234444433332 23457999999999832 356788888
Q ss_pred hccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHH
Q 007367 399 MDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGAD 477 (606)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaD 477 (606)
|+.. ...+++|.+||.+..|.+.+++ |+ ..+++..++.++..+.++..+++.++. .+..+..|+..+.| +.++
T Consensus 145 lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~ 218 (451)
T PRK06305 145 LEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRD 218 (451)
T ss_pred hhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8853 3466777777888889999998 66 478999999999999888877665543 33346777777764 7777
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 478 LQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 478 L~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
+.+.++....+ .+ ..|+.+++.+++
T Consensus 219 a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 219 AESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 77777765433 22 348888776554
No 123
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=1.2e-13 Score=161.32 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=142.0
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH---------
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE--------- 340 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~--------- 340 (606)
|..|++++|+.+.+.+...+.... .....++|+||||+|||++++.+|+.++.+|+.++++...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 489999999999887775332111 12236899999999999999999999999999887664322
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc-----CC--------CCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG-----FS--------GNSG 407 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~-----~~--------~~~~ 407 (606)
.|.|....++...+..+....| ||||||||.+..... + .....|+..+|. +. .-++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g-----~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----G-----DPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----C-----CHHHHHHHHhccccEEEEecccccccccCCc
Confidence 3455555566666666554444 899999999964321 1 134556666653 11 1267
Q ss_pred EEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcC-----CCCC------CcccHHHHHHh-CCCCCH
Q 007367 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG-----KALA------KDVDFEKISRR-TPGFTG 475 (606)
Q Consensus 408 ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~-----~~l~------~dvdl~~La~~-t~G~Sg 475 (606)
+++|+|+|.. .|+++|++ ||. .|.+..++.++..+|.+.++.. .++. .+.-+..+++. +..+-.
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~Ga 541 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGV 541 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCC
Confidence 9999999987 59999999 994 8999999999999999988731 1111 11113445432 233445
Q ss_pred HHHHHHHHHHHHHHHHh----CC---CCCCHHHHHHHH
Q 007367 476 ADLQNLMNEAAILAARR----DL---KEISKDEISDAL 506 (606)
Q Consensus 476 aDL~~Lv~eA~~~A~rr----~~---~~It~edl~~Al 506 (606)
|.|+.+++..+...+.+ +. -.|+.+++.+-+
T Consensus 542 R~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 542 RSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 66666665544443332 11 146666655544
No 124
>PRK06620 hypothetical protein; Validated
Probab=99.52 E-value=2.1e-13 Score=136.55 Aligned_cols=198 Identities=12% Similarity=0.172 Sum_probs=128.4
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKI-PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~-p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
.+..+|++++-.+.-...+..+..+...+ +..+ -+.++||||||||||+|++++++..+..++. .....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-- 79 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-- 79 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc--
Confidence 45678999775553333333333332222 1112 1679999999999999999999988764332 11110
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC--
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV-- 419 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~-- 419 (606)
.+.+ + ...+|+|||||.+- +..+..+++.+. .+++.++|+++..|..
T Consensus 80 ---------~~~~---~--~~d~lliDdi~~~~--------------~~~lf~l~N~~~---e~g~~ilits~~~p~~l~ 128 (214)
T PRK06620 80 ---------EEIL---E--KYNAFIIEDIENWQ--------------EPALLHIFNIIN---EKQKYLLLTSSDKSRNFT 128 (214)
T ss_pred ---------hhHH---h--cCCEEEEeccccch--------------HHHHHHHHHHHH---hcCCEEEEEcCCCccccc
Confidence 0111 1 23599999999551 123334444333 3455788888776664
Q ss_pred ccccccCCCccc--cccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q 007367 420 LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKE 496 (606)
Q Consensus 420 LD~aLlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~ 496 (606)
+ ++|++ |+. .++.+..||.+++..+++.++...++. ++.-++.|+.+..+ +.+.+.++++.....+... ...
T Consensus 129 l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~-~~~ 203 (214)
T PRK06620 129 L-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALIS-KRK 203 (214)
T ss_pred h-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHc-CCC
Confidence 5 78888 664 379999999999999999888755543 33346777777764 8999999999865444443 357
Q ss_pred CCHHHHHHHH
Q 007367 497 ISKDEISDAL 506 (606)
Q Consensus 497 It~edl~~Al 506 (606)
||...+.+++
T Consensus 204 it~~~~~~~l 213 (214)
T PRK06620 204 ITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHh
Confidence 9988888765
No 125
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=1.6e-13 Score=148.12 Aligned_cols=175 Identities=31% Similarity=0.463 Sum_probs=124.7
Q ss_pred cccchHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH-HHhh-hh
Q 007367 271 VAGADQAKLELQEVVDF-LKNPDKYTAL-GAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVG-VG 346 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~~-Lk~p~~~~~l-G~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~-~~~G-~~ 346 (606)
|+|++++|+.+...+.. ++.......+ .-..|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 89999999999776552 2221111111 1235789999999999999999999999999999999887764 5666 34
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 007367 347 ASRVRDLFEKAK-------------------------------------------------------------------- 358 (606)
Q Consensus 347 ~~~vr~lF~~A~-------------------------------------------------------------------- 358 (606)
+..++.+|+.|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 444555544440
Q ss_pred -----------------------------------------------------------------------cCCCeEEEE
Q 007367 359 -----------------------------------------------------------------------SKAPCIVFI 367 (606)
Q Consensus 359 -----------------------------------------------------------------------~~aP~ILfI 367 (606)
...-.||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012349999
Q ss_pred ccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--------CCCcEEEEEeeC----CCCCccccccCCCccccccc
Q 007367 368 DEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVLAATN----RPDVLDSALLRPGRFDRQVT 435 (606)
Q Consensus 368 DEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--------~~~~ViVIaaTN----~p~~LD~aLlRpgRFd~~I~ 435 (606)
||||.++.+.+. .+.+-..+.+...||..++|-. ...++++|++.- .|..|=|.|.- ||..++.
T Consensus 254 DEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 329 (441)
T TIGR00390 254 DEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVE 329 (441)
T ss_pred EchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 999999876422 2233445567888999888742 235688887754 45566677765 9999999
Q ss_pred cCCCCHHHHHHHHH
Q 007367 436 VDRPDVAGRVKILQ 449 (606)
Q Consensus 436 v~~Pd~~eR~~IL~ 449 (606)
+..++.++..+||.
T Consensus 330 L~~L~~edL~rILt 343 (441)
T TIGR00390 330 LQALTTDDFERILT 343 (441)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999998884
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=2.3e-13 Score=148.00 Aligned_cols=224 Identities=23% Similarity=0.313 Sum_probs=137.2
Q ss_pred cccc-cccchHHHHHHHHHHHH----hcCc-hhhhhcCCC-CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 267 TFAD-VAGADQAKLELQEVVDF----LKNP-DKYTALGAK-IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 267 tf~D-I~G~d~~K~eL~eiv~~----Lk~p-~~~~~lG~~-~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
.+++ |+|++++++.|...+.. +... ......+.. ...++||+||||||||++|+++|..+++||..+++..+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3444 69999999999876631 2110 000000111 235899999999999999999999999999999988765
Q ss_pred H-HHhhhh-hHHHHHHHHHH----HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC---------
Q 007367 340 E-LFVGVG-ASRVRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG--------- 404 (606)
Q Consensus 340 ~-~~~G~~-~~~vr~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~--------- 404 (606)
. .|+|.. ...+..++..+ ....++||||||||.+.+++.......+-..+.+++.||+.|++...
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence 3 466653 23333433322 23456799999999998754322211122223566677777765421
Q ss_pred --CCcEEEEEeeCCC---------------------------C-----------------------CccccccCCCcccc
Q 007367 405 --NSGVIVLAATNRP---------------------------D-----------------------VLDSALLRPGRFDR 432 (606)
Q Consensus 405 --~~~ViVIaaTN~p---------------------------~-----------------------~LD~aLlRpgRFd~ 432 (606)
..+.++|.|+|-. + -+.|+|+. |+|.
T Consensus 234 ~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~ 311 (413)
T TIGR00382 234 HPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPV 311 (413)
T ss_pred ccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCe
Confidence 1246777777751 0 02244444 8999
Q ss_pred ccccCCCCHHHHHHHHHHH----hc-------CCCCC---CcccHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHh
Q 007367 433 QVTVDRPDVAGRVKILQVH----SR-------GKALA---KDVDFEKISRR--TPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 433 ~I~v~~Pd~~eR~~IL~~~----l~-------~~~l~---~dvdl~~La~~--t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
++.|.+.+.++..+|+... ++ ..++. .+.-++.|++. ...+-.|.|+.++++.......+
T Consensus 312 Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 312 IATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred EeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 9999999999999988752 21 11221 11224556654 33455677777777766555443
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.7e-13 Score=152.34 Aligned_cols=209 Identities=22% Similarity=0.312 Sum_probs=142.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-----eec-h
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-----SCA-A 335 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi-----~vs-~ 335 (606)
+..+.+|+||+|++.+++.|+..+..- +.+..+||+||+|+|||++|+++|+.+++..- .+. |
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 456789999999999999887766531 34567899999999999999999998864221 010 1
Q ss_pred ---hhHHHH----H------hhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH
Q 007367 336 ---SEFVEL----F------VGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (606)
Q Consensus 336 ---se~~~~----~------~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e 398 (606)
..+... + ...+...++++.+.+.. ....||||||+|.|. ...++.||..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLLk~ 143 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALLKT 143 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHHHH
Confidence 111100 0 01223445665554432 234699999999883 2457788888
Q ss_pred hccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHH
Q 007367 399 MDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGAD 477 (606)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaD 477 (606)
++... ..+++|.+++..+.+.+.+++ |+ ..+.|..++..+...+++..+.+.++. .+..+..|+..+.| +.++
T Consensus 144 LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~ 217 (585)
T PRK14950 144 LEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRD 217 (585)
T ss_pred HhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 88543 346666667777878888887 55 468899999999999988877665543 23346677777665 8888
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 478 LQNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 478 L~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
+.+.++....+ ....|+.+++.+.
T Consensus 218 al~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 218 AENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 88888875443 2356888887654
No 128
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.51 E-value=1.5e-13 Score=148.36 Aligned_cols=175 Identities=33% Similarity=0.468 Sum_probs=127.5
Q ss_pred cccchHHHHHHHHHHHH-hcCchhhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH-HHhh-hh
Q 007367 271 VAGADQAKLELQEVVDF-LKNPDKYTALG-AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVG-VG 346 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~~-Lk~p~~~~~lG-~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~-~~~G-~~ 346 (606)
|+|++++|+.+...+.. ++.......+. -..|+++||+||||||||++|+++|..++.||+.+++++|.+ .|+| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 99999999999876642 22111111111 123689999999999999999999999999999999998886 5777 33
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 007367 347 ASRVRDLFEKAK-------------------------------------------------------------------- 358 (606)
Q Consensus 347 ~~~vr~lF~~A~-------------------------------------------------------------------- 358 (606)
+..++++|+.|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 555666666551
Q ss_pred --c--------------------------------------------------------------------CCCeEEEEc
Q 007367 359 --S--------------------------------------------------------------------KAPCIVFID 368 (606)
Q Consensus 359 --~--------------------------------------------------------------------~aP~ILfID 368 (606)
. ..-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 022499999
Q ss_pred cccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--------CCCcEEEEEeeC----CCCCccccccCCCcccccccc
Q 007367 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVLAATN----RPDVLDSALLRPGRFDRQVTV 436 (606)
Q Consensus 369 EID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--------~~~~ViVIaaTN----~p~~LD~aLlRpgRFd~~I~v 436 (606)
|||.++.+.+. ++.+-..+.+...||..++|-. ..++|++|++-- .|++|-|.|.- ||..++.+
T Consensus 257 EiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 257 EIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred cchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 99999876432 2334445667888999888732 245688887654 45667778876 99999999
Q ss_pred CCCCHHHHHHHHH
Q 007367 437 DRPDVAGRVKILQ 449 (606)
Q Consensus 437 ~~Pd~~eR~~IL~ 449 (606)
..++.++..+||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999884
No 129
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.9e-13 Score=152.95 Aligned_cols=213 Identities=18% Similarity=0.292 Sum_probs=145.5
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-----------
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF----------- 331 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi----------- 331 (606)
..+.+|+||+|++.+++.|+..+.. .+.+.++||+||+|||||++|+++|+.+.+.-.
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 4567999999999999988776542 245678999999999999999999999876210
Q ss_pred e-----echhhHHH-------HHhh---hhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHH
Q 007367 332 S-----CAASEFVE-------LFVG---VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTI 392 (606)
Q Consensus 332 ~-----vs~se~~~-------~~~G---~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~L 392 (606)
. -+|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+. ....
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~~a~ 144 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------TAAF 144 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------HHHH
Confidence 0 01111110 0111 123556666665532 234599999999983 2356
Q ss_pred HHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007367 393 NQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTP 471 (606)
Q Consensus 393 n~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~ 471 (606)
+.||..|+... ..+++|.+|+.+..|.+.+++ |. ..++|..++.++....++..++..++. .+..++.|+..+.
T Consensus 145 naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 78888888533 345666666777888888888 54 588999999999888888777654442 3444677777776
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Q 007367 472 GFTGADLQNLMNEAAILAAR-RDLKEISKDEISDAL 506 (606)
Q Consensus 472 G~SgaDL~~Lv~eA~~~A~r-r~~~~It~edl~~Al 506 (606)
| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 220 G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 220 G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred C-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 5 778888887776555421 224568888777655
No 130
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.51 E-value=7.8e-13 Score=138.11 Aligned_cols=207 Identities=21% Similarity=0.242 Sum_probs=137.5
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCeee
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-----VPFFS 332 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g-----~pfi~ 332 (606)
.|..+..+.+|+|++|++++++.|+..+.. . .. .++||+||||||||++++++++++. ..++.
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKE---K--------NM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhC---C--------CC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 345566778999999999998888776642 1 11 2589999999999999999999873 34555
Q ss_pred echhhHHHHHhhhhhHHHHHHHHH-HHc-----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCC
Q 007367 333 CAASEFVELFVGVGASRVRDLFEK-AKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (606)
Q Consensus 333 vs~se~~~~~~G~~~~~vr~lF~~-A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~ 406 (606)
+++++-.. ...+++.+.. +.. ..+.+|+|||+|.+.. . ..+.|+..++.....
T Consensus 74 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~---~~~~L~~~le~~~~~- 132 (319)
T PRK00440 74 LNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------D---AQQALRRTMEMYSQN- 132 (319)
T ss_pred eccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------H---HHHHHHHHHhcCCCC-
Confidence 55443211 1112222221 111 2346999999998832 1 234556666654433
Q ss_pred cEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEA 485 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA 485 (606)
..+|.++|.+..+.+.+.+ |+. ++++++++.++...+++.++++.++. .+..+..++..+.| +.+.+.+.++.+
T Consensus 133 -~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 133 -TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred -CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 4555667777777778887 664 68999999999999999888765553 34457777777654 666666666654
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q 007367 486 AILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 486 ~~~A~rr~~~~It~edl~~Al~ 507 (606)
... ...|+.+++..++.
T Consensus 208 ~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 208 AAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHc-----CCCCCHHHHHHHhC
Confidence 432 35799998887763
No 131
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.6e-13 Score=153.62 Aligned_cols=207 Identities=20% Similarity=0.299 Sum_probs=142.4
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee----ec---
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS----CA--- 334 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~----vs--- 334 (606)
+..+.+|+|++|++.+++.|+..+..- +.+.++||+||+|+|||++|+++|+.+++.... -.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 445689999999999999888877642 235578999999999999999999998663110 01
Q ss_pred hhh---HH----------HHHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHH
Q 007367 335 ASE---FV----------ELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (606)
Q Consensus 335 ~se---~~----------~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~ 397 (606)
|.. +. +.....+...+|++++.+.. ....|+||||+|.|. ....+.||.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naLLK 143 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNALLK 143 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHHHH
Confidence 111 10 00112345678888877753 234699999999983 246788899
Q ss_pred HhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHH
Q 007367 398 EMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGA 476 (606)
Q Consensus 398 eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~Sga 476 (606)
.|+. ....+++|.+|+.++.+.+.|++ |+ ..+.|..++.++....+...+.+.++. .+..+..+++.+.| +.+
T Consensus 144 ~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr 217 (620)
T PRK14948 144 TLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLR 217 (620)
T ss_pred HHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 33457777778888888889988 65 567888898888888777766554433 22346677777765 667
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007367 477 DLQNLMNEAAILAARRDLKEISKDEISD 504 (606)
Q Consensus 477 DL~~Lv~eA~~~A~rr~~~~It~edl~~ 504 (606)
++.++++....+. ..|+.+++.+
T Consensus 218 ~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 218 DAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 8877777644331 2466655543
No 132
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.3e-13 Score=153.61 Aligned_cols=162 Identities=27% Similarity=0.439 Sum_probs=127.6
Q ss_pred cccccchHHHHHHHHHHHH--hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH------
Q 007367 269 ADVAGADQAKLELQEVVDF--LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE------ 340 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~--Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~------ 340 (606)
+|=.|++++|+++.|.+.- |+.. ...+.++|+||||+|||.++|.||..+|..|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 4678999999999997764 4433 22456899999999999999999999999999998754432
Q ss_pred ---HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-------------C
Q 007367 341 ---LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-------------G 404 (606)
Q Consensus 341 ---~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-------------~ 404 (606)
.|+|....++-+.++......| +++|||||.++. +. . ++ --..||+.||--. .
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~--q-GD-----PasALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GH--Q-GD-----PASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CC--C-CC-----hHHHHHHhcChhhccchhhhccccccc
Confidence 4788888888888888888888 899999999973 11 1 11 1223455444211 1
Q ss_pred CCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHh
Q 007367 405 NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (606)
Q Consensus 405 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l 452 (606)
-++|++|||.|..+.|++.|+. |+ ..|+++-+..+|..+|.+.|+
T Consensus 552 LSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 2469999999999999999999 87 689999999999999999887
No 133
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.50 E-value=7.6e-13 Score=136.22 Aligned_cols=187 Identities=21% Similarity=0.265 Sum_probs=114.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechh------hHHHHHhhhhhHHHH---------------------HHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS------EFVELFVGVGASRVR---------------------DLFE 355 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s------e~~~~~~G~~~~~vr---------------------~lF~ 355 (606)
..+||+||||||||++|+++|...|.+++.++|. ++...+.+.....+. .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4689999999999999999999999999998775 333333221111111 1222
Q ss_pred HHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc----cC-------CCCCcEEEEEeeCCCC-----C
Q 007367 356 KAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD----GF-------SGNSGVIVLAATNRPD-----V 419 (606)
Q Consensus 356 ~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld----~~-------~~~~~ViVIaaTN~p~-----~ 419 (606)
.++. ..+|+||||+.+ +.+.+..+..+|.+-. +. ..+.++.||+|+|... .
T Consensus 102 A~~~--g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVRE--GFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHc--CCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 2222 359999999997 3333444444443211 00 0223678999999763 5
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc--cHHHHHHhC------CCCCHHHHHHHHHHHHHHHHH
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV--DFEKISRRT------PGFTGADLQNLMNEAAILAAR 491 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv--dl~~La~~t------~G~SgaDL~~Lv~eA~~~A~r 491 (606)
++++|++ || ..+.++.|+.++..+|++.+.. +.... .+..++..+ ...+.+....+++ ..+..
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~---~~~~~ 239 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSGLRASLMIAE---VATQQ 239 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHH---HHHHc
Confidence 6899999 88 6889999999999999998752 22111 111121111 1233344433333 33444
Q ss_pred hCCCCCCHHHHHHHHHHHHc
Q 007367 492 RDLKEISKDEISDALERIIA 511 (606)
Q Consensus 492 r~~~~It~edl~~Al~ri~~ 511 (606)
.....++.+|+.+.+..++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 240 DIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred CCCCCCCcHHHHHHHHHHhc
Confidence 55667888888887776653
No 134
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.49 E-value=8e-14 Score=152.69 Aligned_cols=217 Identities=26% Similarity=0.359 Sum_probs=148.2
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~ 339 (606)
....+|+||+|...+..++.+.+.... ..+..|||.|++||||.++|++|-+.. +.||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIA----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhc----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 345789999999999888887776543 335689999999999999999997754 6899999997654
Q ss_pred HHH-----hhh------hhHH--HHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCC
Q 007367 340 ELF-----VGV------GASR--VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSG 404 (606)
Q Consensus 340 ~~~-----~G~------~~~~--vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~ 404 (606)
+.. .|. |+.+ -..+|+.|..+ .||+|||..+ +...+..+-..|++-+ .+.+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 422 221 2222 45678888777 8999999888 3445555555555522 2222
Q ss_pred ----CCcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHHHHH----HHh----cCCCC----CCcc
Q 007367 405 ----NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVKILQ----VHS----RGKAL----AKDV 461 (606)
Q Consensus 405 ----~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~IL~----~~l----~~~~l----~~dv 461 (606)
.-+|.||+|||+.- ..+...|+|.. ++.+..|...+|.+-+. .++ ++.+- -.+.
T Consensus 375 t~~~~vDVRIIAATN~nL---~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRNL---EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcCH---HHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 23599999999754 34444566655 77888899999975322 222 22111 1222
Q ss_pred cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 007367 462 DFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS-DALER 508 (606)
Q Consensus 462 dl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~-~Al~r 508 (606)
.+..|.+.-+-.+.++|+|++.++....- ....|+.+|+. ..++.
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp~~~l~~ 497 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLPAFALEE 497 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcchhhhcc
Confidence 35666777777799999999999987543 33448888887 55544
No 135
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.47 E-value=1.1e-12 Score=149.78 Aligned_cols=214 Identities=22% Similarity=0.339 Sum_probs=133.9
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeee
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSC 333 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~v 333 (606)
.+.+|+|++|++.+.+.+.+.+ .. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~i---a~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKV---AS---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHH---hc---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 3578999999999987664433 11 124579999999999999999998655 4578999
Q ss_pred chhhHH-------HHHhhhhhH----HHHH-------------HHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHH
Q 007367 334 AASEFV-------ELFVGVGAS----RVRD-------------LFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDERE 389 (606)
Q Consensus 334 s~se~~-------~~~~G~~~~----~vr~-------------lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~ 389 (606)
+|..+. ..+.+.... ..+. .+..+ ...+|||||++.|. ...+
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~a---sgGvL~LDEi~~Ld-----------~~~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDA---HGGVLFIDEIGELD-----------PLLQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhc---CCCeEEEeccccCC-----------HHHH
Confidence 987542 111111100 0111 12222 23499999999983 2333
Q ss_pred HHHHHHHHHhc------cC-----------------CCCCcEEEEE-eeCCCCCccccccCCCccccccccCCCCHHHHH
Q 007367 390 QTINQLLTEMD------GF-----------------SGNSGVIVLA-ATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRV 445 (606)
Q Consensus 390 ~~Ln~LL~eld------~~-----------------~~~~~ViVIa-aTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~ 445 (606)
..+..++..-. .+ .....+++|+ +|+.++.++++|++ ||. .+.+++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 33333333210 00 0122355555 45568889999988 886 5788999999999
Q ss_pred HHHHHHhcCCCCCCccc-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHH
Q 007367 446 KILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQNLMNEAAILAARR--------DLKEISKDEISDALER 508 (606)
Q Consensus 446 ~IL~~~l~~~~l~~dvd-l~~La~~t~G~SgaDL~~Lv~eA~~~A~rr--------~~~~It~edl~~Al~r 508 (606)
+|++..+.+.++.-+.+ ++.|+..+. .++...+++..+...+..+ ....|+.+|+++++..
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99999887654322223 444555443 5666667776665554322 1236899999888765
No 136
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.46 E-value=3.9e-13 Score=142.79 Aligned_cols=215 Identities=22% Similarity=0.343 Sum_probs=132.5
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeee--ec
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFS--CA 334 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-------g~pfi~--vs 334 (606)
.++.|++|+|++++++.|.-..- ++. -.++||+|+||||||++||++++-+ +.++-. +.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 46789999999999887753211 110 1369999999999999999999977 332111 11
Q ss_pred h-hhH---------------HHH--------Hhhh---------hhHHH-HHHHHHHHcCCCeEEEEccccchhhccCCC
Q 007367 335 A-SEF---------------VEL--------FVGV---------GASRV-RDLFEKAKSKAPCIVFIDEIDAVGRQRGAG 380 (606)
Q Consensus 335 ~-se~---------------~~~--------~~G~---------~~~~v-r~lF~~A~~~aP~ILfIDEID~L~~~r~~~ 380 (606)
+ .++ ... ..|. +.... ...+..+.. .+||||||+.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~---GiL~lDEInrl~~----- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANR---GYLYIDEVNLLED----- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCC---CeEEecChHhCCH-----
Confidence 0 000 000 1110 00000 011112222 3999999999832
Q ss_pred CCCCChhHHHHHHHHHHHhccC-----------CCCCcEEEEEeeCCCC-CccccccCCCccccccccCCCCH-HHHHHH
Q 007367 381 LGGGNDEREQTINQLLTEMDGF-----------SGNSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRPDV-AGRVKI 447 (606)
Q Consensus 381 ~~~~~~e~~~~Ln~LL~eld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~Pd~-~eR~~I 447 (606)
.++..|+..|+.- .....+++|+++|..+ .++++++. ||...+.++.|.. ++|.+|
T Consensus 143 ---------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 143 ---------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred ---------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 3455555555421 1234689999999755 58999999 9999999998866 899999
Q ss_pred HHHHhcCC----CCC--------------------------Cccc---HHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhC
Q 007367 448 LQVHSRGK----ALA--------------------------KDVD---FEKISRRTPG-FTGADLQNLMNEAAILAARRD 493 (606)
Q Consensus 448 L~~~l~~~----~l~--------------------------~dvd---l~~La~~t~G-~SgaDL~~Lv~eA~~~A~rr~ 493 (606)
++...... .+. .+.- +..++..+.- -.-++|. +++.|...|..++
T Consensus 212 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~G 290 (334)
T PRK13407 212 IRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEG 290 (334)
T ss_pred HHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcC
Confidence 98743211 000 0000 1223333331 2334444 9999999999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 007367 494 LKEISKDEISDALERII 510 (606)
Q Consensus 494 ~~~It~edl~~Al~ri~ 510 (606)
++.|+.+|+..+..-++
T Consensus 291 r~~V~~~Di~~~~~~vl 307 (334)
T PRK13407 291 AEAVGRSHLRSVATMAL 307 (334)
T ss_pred CCeeCHHHHHHHHHHhh
Confidence 99999999987775443
No 137
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.46 E-value=4.7e-13 Score=145.07 Aligned_cols=198 Identities=26% Similarity=0.385 Sum_probs=138.1
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~ 341 (606)
...+.+|||...++.++.+.|+.....+ ..|||+|++||||.++||+|-... +.||+.+||..+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 5788899999999999999998765543 379999999999999999997755 679999999877653
Q ss_pred Hh-----hh------hh-HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH--hccCCCC--
Q 007367 342 FV-----GV------GA-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE--MDGFSGN-- 405 (606)
Q Consensus 342 ~~-----G~------~~-~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e--ld~~~~~-- 405 (606)
.. |. |+ ..-+.-|+.|..+ .||+|||..| .-..+..+-..|++ ++.+.++
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCce
Confidence 22 21 11 1112356666655 8999999888 33445555555554 3333332
Q ss_pred --CcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH--------HHHHHhcCCCC-C---CcccHH
Q 007367 406 --SGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK--------ILQVHSRGKAL-A---KDVDFE 464 (606)
Q Consensus 406 --~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~--------IL~~~l~~~~l-~---~dvdl~ 464 (606)
-+|.||+|||+.- ....+.|+|.. ++.+..|...+|.+ +++.+.++.+. . ....++
T Consensus 355 ikVDVRiIAATNRDL---~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~ 431 (550)
T COG3604 355 IKVDVRVIAATNRDL---EEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALE 431 (550)
T ss_pred eEEEEEEEeccchhH---HHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHH
Confidence 2489999999854 34455567654 77888899999864 22222233333 1 122356
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHH
Q 007367 465 KISRRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 465 ~La~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
.|.+...-.+.++|+|++++|+..|
T Consensus 432 ~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 432 LLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 6777766679999999999999988
No 138
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.6e-12 Score=146.67 Aligned_cols=209 Identities=21% Similarity=0.290 Sum_probs=143.6
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee---------e
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS---------C 333 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~---------v 333 (606)
..+.+|+||+|++.+++.|...+.. .+.|..+|||||+|+|||++|+++|+.+.+.... -
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 4568999999999998888776652 2456779999999999999999999987642110 0
Q ss_pred chhhHHHH-------Hhh---hhhHHHHHHHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 334 AASEFVEL-------FVG---VGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 334 s~se~~~~-------~~G---~~~~~vr~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+|..+.+. +.+ .+...++++.+.+... ...|++|||+|.+. ....+.|+..|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~naLLK~L 145 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNAFLKTL 145 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHHHHHHH
Confidence 11122110 001 1234567777666432 23599999999983 24577888888
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~La~~t~G~SgaDL 478 (606)
+... ..+++|.+|+.+..|-+.|++ |+ ..+.|..++.++....++..+.+.++..+. .+..|+..+. .+.+++
T Consensus 146 Eepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~-gdlr~a 219 (614)
T PRK14971 146 EEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD-GGMRDA 219 (614)
T ss_pred hCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHH
Confidence 8543 345666777777888899998 65 569999999999999998887766665333 3677777775 477888
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.++++....++ +.. |+.+++.+.+
T Consensus 220 l~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 220 LSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 78777665443 222 6666655543
No 139
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.44 E-value=2e-12 Score=150.29 Aligned_cols=164 Identities=21% Similarity=0.284 Sum_probs=115.8
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH-----HHhhh
Q 007367 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-----LFVGV 345 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~-----~~~G~ 345 (606)
|+|++++++.|.+.+...+..-.- ..++...+||+||||||||++|+++|..++.+|+.++|+++.+ .+.|.
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~---~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGH---EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccC---CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC
Confidence 899999999999988754321100 0122346999999999999999999999999999999998754 23332
Q ss_pred hhHH-----HHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC--CC-------CCcEEEE
Q 007367 346 GASR-----VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF--SG-------NSGVIVL 411 (606)
Q Consensus 346 ~~~~-----vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~--~~-------~~~ViVI 411 (606)
.... -..+.+..+....+||||||||.+.+ .+.+.||+.||.- .. -.++++|
T Consensus 537 ~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~--------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP--------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred CCCcccccccchHHHHHHhCCCcEEEeccHhhhhH--------------HHHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 1111 11233334455568999999999832 3566677766632 11 1367899
Q ss_pred EeeCCC-------------------------CCccccccCCCccccccccCCCCHHHHHHHHHHHhc
Q 007367 412 AATNRP-------------------------DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 453 (606)
Q Consensus 412 aaTN~p-------------------------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~ 453 (606)
+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+...+.
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 999932 124567776 9999999999999999999987663
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.44 E-value=2.1e-12 Score=150.53 Aligned_cols=197 Identities=23% Similarity=0.313 Sum_probs=130.7
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH-----Hh
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK-GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-----FV 343 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~-gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~-----~~ 343 (606)
.|+|++++++.+.+.+...+..-. ....|. .+||+||+|||||++|+++|..++.+++.++++++.+. +.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 488999998888887765322100 011244 58999999999999999999999999999999987652 22
Q ss_pred hhh-----hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC---------CCCcEE
Q 007367 344 GVG-----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GNSGVI 409 (606)
Q Consensus 344 G~~-----~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~---------~~~~Vi 409 (606)
|.. ......+.+..+....+||||||||.+.+ ...+.||+.||.-. .-.+++
T Consensus 531 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~--------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~i 596 (731)
T TIGR02639 531 GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP--------------DIYNILLQVMDYATLTDNNGRKADFRNVI 596 (731)
T ss_pred cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH--------------HHHHHHHHhhccCeeecCCCcccCCCCCE
Confidence 221 11223344555566678999999998832 35666777766421 113578
Q ss_pred EEEeeCCCC-------------------------CccccccCCCccccccccCCCCHHHHHHHHHHHhcC-------CCC
Q 007367 410 VLAATNRPD-------------------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG-------KAL 457 (606)
Q Consensus 410 VIaaTN~p~-------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~-------~~l 457 (606)
+|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+++ .++
T Consensus 597 ii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~ 674 (731)
T TIGR02639 597 LIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI 674 (731)
T ss_pred EEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999998632 14556666 99999999999999999999977642 111
Q ss_pred C---CcccHHHHHHh--CCCCCHHHHHHHHHHHH
Q 007367 458 A---KDVDFEKISRR--TPGFTGADLQNLMNEAA 486 (606)
Q Consensus 458 ~---~dvdl~~La~~--t~G~SgaDL~~Lv~eA~ 486 (606)
. .+..++.|+.. ...+-.+.|+.+++.-.
T Consensus 675 ~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 675 KLELTDDAKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred eEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 1 11123445543 23455666666666544
No 141
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.44 E-value=1.1e-12 Score=139.75 Aligned_cols=218 Identities=22% Similarity=0.278 Sum_probs=138.7
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeeeec-
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCA- 334 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-------g~pfi~vs- 334 (606)
...+.|++|+|++++|..|.-. +.+|. ..|+||.|++|||||++||+++..+ +.||....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~---~~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILN---VIDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHh---ccCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3467899999999998877532 22331 3589999999999999999997754 23443100
Q ss_pred -----hhhHHHHH-------------------hhhhhHHH------HH------------HHHHHHcCCCeEEEEccccc
Q 007367 335 -----ASEFVELF-------------------VGVGASRV------RD------------LFEKAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 335 -----~se~~~~~-------------------~G~~~~~v------r~------------lF~~A~~~aP~ILfIDEID~ 372 (606)
++++.... .+....++ .. ++.+|. ..+||||||+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~---~GiL~lDEInr 155 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKAN---RGILYVDEVNL 155 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecC---CCEEEecChHh
Confidence 01111100 01111111 11 122222 24999999999
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHHhcc---------C--CCCCcEEEEEeeCCCC-CccccccCCCccccccccCCCC
Q 007367 373 VGRQRGAGLGGGNDEREQTINQLLTEMDG---------F--SGNSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRPD 440 (606)
Q Consensus 373 L~~~r~~~~~~~~~e~~~~Ln~LL~eld~---------~--~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~Pd 440 (606)
+.+ . +...|+..|+. . ....++++|++.|..+ .+.++|+. ||...+.+..|+
T Consensus 156 L~~-----------~---~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~ 219 (350)
T CHL00081 156 LDD-----------H---LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVK 219 (350)
T ss_pred CCH-----------H---HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCC
Confidence 832 2 34445555532 1 1234688888888655 58999999 999999999997
Q ss_pred -HHHHHHHHHHHhcCC--CC---------------------------C-Cccc---HHHHHHhCCCCCHHHHHHHHHHHH
Q 007367 441 -VAGRVKILQVHSRGK--AL---------------------------A-KDVD---FEKISRRTPGFTGADLQNLMNEAA 486 (606)
Q Consensus 441 -~~eR~~IL~~~l~~~--~l---------------------------~-~dvd---l~~La~~t~G~SgaDL~~Lv~eA~ 486 (606)
.+.+.+|++...... .. . ++.. +..++..+.--+.|--..+++-|.
T Consensus 220 ~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raAr 299 (350)
T CHL00081 220 DPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAK 299 (350)
T ss_pred ChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHH
Confidence 599999998753210 00 0 0001 223333443346677778889999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHc
Q 007367 487 ILAARRDLKEISKDEISDALERIIA 511 (606)
Q Consensus 487 ~~A~rr~~~~It~edl~~Al~ri~~ 511 (606)
..|+.+++..++.+|+..+..-++.
T Consensus 300 A~Aal~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 300 ALAAFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998876653
No 142
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.2e-12 Score=134.80 Aligned_cols=217 Identities=19% Similarity=0.285 Sum_probs=152.0
Q ss_pred ccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----eeeechhhHHHH
Q 007367 268 FADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-----FFSCAASEFVEL 341 (606)
Q Consensus 268 f~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p-----fi~vs~se~~~~ 341 (606)
-+++.+.++..++|..++.- +++ ..|.++++||+||||||.+++.++.++.-+ ++++||....+.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 34488999988888776553 332 346679999999999999999999987433 899999654322
Q ss_pred H-------h--------hhh-hHHHHHHHHHHHc-CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC
Q 007367 342 F-------V--------GVG-ASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG 404 (606)
Q Consensus 342 ~-------~--------G~~-~~~vr~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~ 404 (606)
+ . |.. ......+++.... ....||+|||+|.|..+.+ ..+..|+...+..
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~-- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN-- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--
Confidence 1 1 111 1122233333332 4567999999999965431 5777777776654
Q ss_pred CCcEEEEEeeCCCC---CccccccCCCccc-cccccCCCCHHHHHHHHHHHhcCCCC---CCcccHHHHH---HhCCCCC
Q 007367 405 NSGVIVLAATNRPD---VLDSALLRPGRFD-RQVTVDRPDVAGRVKILQVHSRGKAL---AKDVDFEKIS---RRTPGFT 474 (606)
Q Consensus 405 ~~~ViVIaaTN~p~---~LD~aLlRpgRFd-~~I~v~~Pd~~eR~~IL~~~l~~~~l---~~dvdl~~La---~~t~G~S 474 (606)
..++.+|+.+|..+ .+|+.+.+ +|. ..|.|++++.++..+|++...+..-- ..+.-++.++ ....| +
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-D 230 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-D 230 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-c
Confidence 56789999999874 68888887 433 35899999999999999987753211 1121233333 33333 6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007367 475 GADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (606)
Q Consensus 475 gaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri 509 (606)
.+-...+|+.|...|.+++...++.+++..|.+.+
T Consensus 231 AR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 231 ARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 77778899999999999999999999999995443
No 143
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.43 E-value=8.5e-13 Score=148.07 Aligned_cols=211 Identities=21% Similarity=0.306 Sum_probs=135.9
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh-----------cCCCeeeec
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE-----------AGVPFFSCA 334 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e-----------~g~pfi~vs 334 (606)
.+|+|++|.+.+.+++++.+..+... ...|||+|++||||+++|++|... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 57999999999999988887754332 347999999999999999999776 467999999
Q ss_pred hhhHHHHH-----hhh------hh--HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc-
Q 007367 335 ASEFVELF-----VGV------GA--SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD- 400 (606)
Q Consensus 335 ~se~~~~~-----~G~------~~--~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld- 400 (606)
|..+.+.. .|. ++ ..-..+|+.|..+ .||||||+.|. ...+..+..+|++-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEMP-----------LPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhCC-----------HHHHHHHHhhhhcCeE
Confidence 98764322 221 11 1122467766555 89999999993 333444444444321
Q ss_pred -cCCC----CCcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHhcC----CCCCCc
Q 007367 401 -GFSG----NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRG----KALAKD 460 (606)
Q Consensus 401 -~~~~----~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l~~----~~l~~d 460 (606)
.... ..++.+|++||..- ..+...|+|.. .+.+..|...+|.+ +++.++++ .+....
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L---~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDL---EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EecCCCceeccceEEEEecCCCH---HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 1111 23468999998753 23334455553 57788899998865 33333322 222111
Q ss_pred cc--------HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 007367 461 VD--------FEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (606)
Q Consensus 461 vd--------l~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~ 503 (606)
.+ +..|....+-.+.++|++++++++.++.......++.+++.
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 11 13455555667999999999999886543333467776654
No 144
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.43 E-value=5.7e-13 Score=145.78 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=143.2
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH-
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL- 341 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~- 341 (606)
..+.+++|...++++|++.+..+...+ ..|||+|++||||.++||+|-... +.||+.+||..+.+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~----------a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSD----------ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCC----------CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 467899999999999999998876554 379999999999999999997654 679999999765432
Q ss_pred ----Hhhh------hh-HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH--hccCCC----
Q 007367 342 ----FVGV------GA-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE--MDGFSG---- 404 (606)
Q Consensus 342 ----~~G~------~~-~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e--ld~~~~---- 404 (606)
..|. ++ .+-...|+.|..+ .||||||..+ ..+.|.-+-..|++ +..+.+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCccc
Confidence 2231 11 2223478888777 9999999988 33444444444443 222222
Q ss_pred CCcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHh----cCCCC----CCcccHHH
Q 007367 405 NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHS----RGKAL----AKDVDFEK 465 (606)
Q Consensus 405 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l----~~~~l----~~dvdl~~ 465 (606)
+-+|.||++||+.- ......|+|.. ++.+..|...+|.+ ++++++ +..+. .....+..
T Consensus 274 ~vdvRiIaaT~~dL---~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 274 KVDVRIIAATNRDL---EEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ceeeEEEeecCcCH---HHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 23589999999864 34445566654 78899999999976 223332 22221 12233566
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 007367 466 ISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (606)
Q Consensus 466 La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~ 503 (606)
|....+-.+.++|+|+++++++.+ ....|+.+++.
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 666666678999999999998776 44567777665
No 145
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.42 E-value=4.3e-12 Score=132.71 Aligned_cols=99 Identities=21% Similarity=0.296 Sum_probs=80.5
Q ss_pred EEEEeeCC------------CCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCH
Q 007367 409 IVLAATNR------------PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTG 475 (606)
Q Consensus 409 iVIaaTN~------------p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~La~~t~G~Sg 475 (606)
++|.+||+ |.-++..|+. |. ..|...+++.++.++|++..++...+.- +..++.|+..-..-|.
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 67777775 4557777777 55 5788889999999999999987766553 3347888888777888
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 476 ADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 476 aDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
+-..+|+.-|.+.|.+++...|..+|+++|.+-..
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFL 433 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHh
Confidence 99999999999999999999999999999976543
No 146
>PRK09087 hypothetical protein; Validated
Probab=99.39 E-value=5.6e-12 Score=127.24 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=118.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG 383 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~ 383 (606)
.++|+||+|+|||+|+++++...++. +++..+|...+. ..... .+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC--------
Confidence 48999999999999999999887655 444444433222 11112 3799999997621
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC---ccccccCCCccc--cccccCCCCHHHHHHHHHHHhcCCCCC
Q 007367 384 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA 458 (606)
Q Consensus 384 ~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~ 458 (606)
. +..+-++++.+ ...+..+||+++..|.. ..+.|++ ||. .++++..|+.++|.++++.+++..++.
T Consensus 102 -~---~~~lf~l~n~~---~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 -D---ETGLFHLINSV---RQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred -C---HHHHHHHHHHH---HhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 12233344333 33445677777666553 3678888 664 699999999999999999998776554
Q ss_pred C-cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007367 459 K-DVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (606)
Q Consensus 459 ~-dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri 509 (606)
- +.-++.|+++..+ +.+.+..+++.....+...+ +.||...+++++...
T Consensus 173 l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 173 VDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 3 3346778887774 88888888888766665544 669999999988764
No 147
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=6.4e-12 Score=133.77 Aligned_cols=214 Identities=23% Similarity=0.289 Sum_probs=135.3
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCee--------
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFF-------- 331 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-------g~pfi-------- 331 (606)
.|..|+|++++|..|.-. +-+|. ..+++|.|+||+|||+++|++++-+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~---~~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLN---VIDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHH---hcCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 488999999998776321 11221 3479999999999999999999866 33322
Q ss_pred -eechhh---H-------------HHHHhhhhhHHH------------------HHHHHHHHcCCCeEEEEccccchhhc
Q 007367 332 -SCAASE---F-------------VELFVGVGASRV------------------RDLFEKAKSKAPCIVFIDEIDAVGRQ 376 (606)
Q Consensus 332 -~vs~se---~-------------~~~~~G~~~~~v------------------r~lF~~A~~~aP~ILfIDEID~L~~~ 376 (606)
..+|.. + .+.-.+..+.++ ..++.++.. .+|||||++.+..
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~---GvL~lDEi~~L~~- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR---GILYIDEVNLLED- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC---CEEEecChHhCCH-
Confidence 111111 0 010000011111 112222322 4999999999832
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhccC-----------CCCCcEEEEEeeCCCC-CccccccCCCccccccccCCCCH-HH
Q 007367 377 RGAGLGGGNDEREQTINQLLTEMDGF-----------SGNSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRPDV-AG 443 (606)
Q Consensus 377 r~~~~~~~~~e~~~~Ln~LL~eld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~Pd~-~e 443 (606)
.++..|+..|+.- ....++++|++.|..+ .++++|+. ||...+.++.|+. ++
T Consensus 146 -------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 146 -------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred -------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 2444555555321 1124588889988655 68999999 9999999999975 88
Q ss_pred HHHHHHHHhcCC----C----C----------------------CCccc---HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 444 RVKILQVHSRGK----A----L----------------------AKDVD---FEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 444 R~~IL~~~l~~~----~----l----------------------~~dvd---l~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
|.+|++...... . + ..+.- +..++..+..-+.+.-..+++.|...|+
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 889988743210 0 0 00111 2333444443366777789999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHc
Q 007367 491 RRDLKEISKDEISDALERIIA 511 (606)
Q Consensus 491 rr~~~~It~edl~~Al~ri~~ 511 (606)
.+++..++.+|+..+..-++.
T Consensus 291 l~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 291 FEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred HcCCCCCCHHHHHHHHHHHHH
Confidence 999999999999998876653
No 148
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.38 E-value=3.4e-12 Score=143.15 Aligned_cols=214 Identities=22% Similarity=0.299 Sum_probs=136.4
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~ 341 (606)
..+|+|++|.....+.+.+.+..+... ...|||+|++||||+++|++|.+.. +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 367999999999999888887654332 3479999999999999999997654 679999999866442
Q ss_pred H-----hhh------hh--HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCC--
Q 007367 342 F-----VGV------GA--SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSG-- 404 (606)
Q Consensus 342 ~-----~G~------~~--~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~-- 404 (606)
. .|. ++ .....+|+.+..+ .|||||||.| +...+..+..+|++-. ....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 2 221 01 1123466666555 8999999999 3334444444444321 1111
Q ss_pred --CCcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHhcC----CCCCCccc-HHH-
Q 007367 405 --NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRG----KALAKDVD-FEK- 465 (606)
Q Consensus 405 --~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l~~----~~l~~dvd-l~~- 465 (606)
..++.+|++||..- ..+...|+|.. .+.+..|+..+|.+ +++.++.+ ..+.-+.+ +..
T Consensus 344 ~~~~dvRiIaat~~~l---~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 344 PVPVDVRVVAATHCAL---TTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred eeeecceEEeccCCCH---HHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 12468999998754 22333344442 56788899988865 23333322 22211111 233
Q ss_pred ------HHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 466 ------ISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 466 ------La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
|....+-.+.++|++++++++..+.......|+.+++...
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 6666666799999999999987753222356888876543
No 149
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.37 E-value=1.1e-11 Score=111.98 Aligned_cols=120 Identities=46% Similarity=0.669 Sum_probs=82.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhhhhHH---HHHHHHHHHcCCCeEEEEccccchhh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGASR---VRDLFEKAKSKAPCIVFIDEIDAVGR 375 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~~~~~---vr~lF~~A~~~aP~ILfIDEID~L~~ 375 (606)
.++++|+||||||||++++.+++.+ +.+++.+++.++........... ....+.......+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4579999999999999999999998 89999999987765433222111 12223344456678999999998721
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhccCCC----CCcEEEEEeeCCCC--CccccccCCCccccccccC
Q 007367 376 QRGAGLGGGNDEREQTINQLLTEMDGFSG----NSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVD 437 (606)
Q Consensus 376 ~r~~~~~~~~~e~~~~Ln~LL~eld~~~~----~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~ 437 (606)
. ....++..+..... ..++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 99 -----------~---~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 -----------G---AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -----------H---HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 12233333333322 35788899999877 67777777 888777664
No 150
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=4.7e-12 Score=133.42 Aligned_cols=206 Identities=16% Similarity=0.185 Sum_probs=130.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH--HhhhhhH---------H-HHHHHHHHHcCCCeEEEEcc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL--FVGVGAS---------R-VRDLFEKAKSKAPCIVFIDE 369 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~--~~G~~~~---------~-vr~lF~~A~~~aP~ILfIDE 369 (606)
.++|||.||||||||++++.+|.+++.|++.+++...... +.|...- . ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3579999999999999999999999999999988765443 3343110 0 1123344433 357899999
Q ss_pred ccchhhccCCCCCCCChhHHHHHHHHHHH-----hc----cCCCCCcEEEEEeeCCCC------------CccccccCCC
Q 007367 370 IDAVGRQRGAGLGGGNDEREQTINQLLTE-----MD----GFSGNSGVIVLAATNRPD------------VLDSALLRPG 428 (606)
Q Consensus 370 ID~L~~~r~~~~~~~~~e~~~~Ln~LL~e-----ld----~~~~~~~ViVIaaTN~p~------------~LD~aLlRpg 428 (606)
||.. ..+....++.+|+. +. .+..+..+.||+|.|..+ .|+++++.
T Consensus 143 in~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987 33445566667663 11 112445789999999854 36899999
Q ss_pred ccccccccCCCCHHHHHHHHHHHhcCCCCCCcc----cHHHHHHhC----------CCCCHHHHHHHHHHHHHHHHHhCC
Q 007367 429 RFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV----DFEKISRRT----------PGFTGADLQNLMNEAAILAARRDL 494 (606)
Q Consensus 429 RFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv----dl~~La~~t----------~G~SgaDL~~Lv~eA~~~A~rr~~ 494 (606)
||-.++.++.|+.++-.+|+........-..+. .+..++..+ .+.|.|.+..+...+.+. +
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f----~- 284 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIF----D- 284 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhh----C-
Confidence 998888999999999999998765432200000 122233222 245777777777665433 1
Q ss_pred CCCCHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHH
Q 007367 495 KEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVG 539 (606)
Q Consensus 495 ~~It~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEaGhAlv~ 539 (606)
.++..|++..+... -.+. .+.++||.-...+.
T Consensus 285 -----~~~~~a~~~~~~n~------~~~~--er~~~~e~~q~~f~ 316 (327)
T TIGR01650 285 -----HDIALAFRLTFLNK------CDEL--ERPTVAEFFQRAFG 316 (327)
T ss_pred -----ccHHHHHHHHHHhc------CCHH--HHHHHHHHHHHHcC
Confidence 25666776654311 1223 34556775544443
No 151
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.36 E-value=5.1e-11 Score=119.21 Aligned_cols=199 Identities=21% Similarity=0.317 Sum_probs=141.1
Q ss_pred cccccCC-CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeee
Q 007367 257 KFQEVPE-TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFS 332 (606)
Q Consensus 257 ~~~~~~~-~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~ 332 (606)
.+..++. ..+.+++|+|+|.+|+.|.+-...+.. ..+.++|||||..||||+.|+||+-++. +..+++
T Consensus 47 ~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVE 118 (287)
T COG2607 47 YLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVE 118 (287)
T ss_pred cccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEE
Confidence 3444444 359999999999999998776554332 2345789999999999999999998776 678999
Q ss_pred echhhHHHHHhhhhhHHHHHHHHHHHcC-CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC--CCCCcEE
Q 007367 333 CAASEFVELFVGVGASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF--SGNSGVI 409 (606)
Q Consensus 333 vs~se~~~~~~G~~~~~vr~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~--~~~~~Vi 409 (606)
|+-.++.. +-.+++..+.. ..-|||+|++- -++.+.....|-..|||- ....+|+
T Consensus 119 V~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-------------Fe~gd~~yK~LKs~LeG~ve~rP~NVl 176 (287)
T COG2607 119 VDKEDLAT---------LPDLVELLRARPEKFILFCDDLS-------------FEEGDDAYKALKSALEGGVEGRPANVL 176 (287)
T ss_pred EcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC-------------CCCCchHHHHHHHHhcCCcccCCCeEE
Confidence 99888754 44556666543 34699999972 222234455566667764 2356899
Q ss_pred EEEeeCCCCCcccccc--------------------CCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc---c--HH
Q 007367 410 VLAATNRPDVLDSALL--------------------RPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV---D--FE 464 (606)
Q Consensus 410 VIaaTN~p~~LD~aLl--------------------RpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv---d--l~ 464 (606)
+.+|+|+...|++.+. -..||...+.|.+++.++...|+..++++.++.-+. + ..
T Consensus 177 ~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl 256 (287)
T COG2607 177 FYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEAL 256 (287)
T ss_pred EEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999876653221 124999999999999999999999999887775432 1 23
Q ss_pred HHHHhCCCCCHHHHHHHHHHH
Q 007367 465 KISRRTPGFTGADLQNLMNEA 485 (606)
Q Consensus 465 ~La~~t~G~SgaDL~~Lv~eA 485 (606)
+.|..-.|-||+-..+.++..
T Consensus 257 ~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 257 QWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHhcCCCccHhHHHHHHHH
Confidence 344455567777766666543
No 152
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.35 E-value=4.2e-12 Score=143.16 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=132.6
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
...+|++++|.+...+++.+.+..+... ...|||+|++||||+++|++|.... +.||+.++|..+.+
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARS----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 3468999999999988888877765432 3469999999999999999998764 57999999987644
Q ss_pred HHh-----hhhh-------HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCC--
Q 007367 341 LFV-----GVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSG-- 404 (606)
Q Consensus 341 ~~~-----G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~-- 404 (606)
... |... ......|+.+. ..+|||||||.+. ...+..+..++..-. ....
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCc
Confidence 321 1100 00112244443 3499999999993 333334444443211 0111
Q ss_pred --CCcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHhcC----CC--C-CCcccHH
Q 007367 405 --NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRG----KA--L-AKDVDFE 464 (606)
Q Consensus 405 --~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l~~----~~--l-~~dvdl~ 464 (606)
..++.+|++|+..- ..+...|+|.. .+.+..|...+|.+ +++.++.+ .+ . ..+..+.
T Consensus 327 ~~~~~~riI~~s~~~l---~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 327 TLKVDVRLVAATNRDL---EEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred eEeecEEEEEeCCCCH---HHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 12478899888642 12233445532 55677788777743 33433321 11 1 1222356
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007367 465 KISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISD 504 (606)
Q Consensus 465 ~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~ 504 (606)
.|....+..+.++|++++++++..+ ....|+.+|+..
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 6777777779999999999997664 345788888753
No 153
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.34 E-value=1e-11 Score=142.60 Aligned_cols=212 Identities=24% Similarity=0.307 Sum_probs=137.3
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------------------- 326 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-------------------- 326 (606)
-|.+|+|++.+|..|.-.. .++. ..+|||+|++|||||++||+++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999986664222 2221 1479999999999999999999876
Q ss_pred ---------------CCCeeeechhhHHHHHhhhh--hHHH--------HHHHHHHHcCCCeEEEEccccchhhccCCCC
Q 007367 327 ---------------GVPFFSCAASEFVELFVGVG--ASRV--------RDLFEKAKSKAPCIVFIDEIDAVGRQRGAGL 381 (606)
Q Consensus 327 ---------------g~pfi~vs~se~~~~~~G~~--~~~v--------r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~ 381 (606)
..||+.+.++...+..+|.- ...+ ..++.+|.. .|||||||+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~---GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHR---GILYIDEVNLLDD------ 140 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCC---CeEEeChhhhCCH------
Confidence 34676665543333333321 0000 112223332 3999999999832
Q ss_pred CCCChhHHHHHHHHHHHhccC-----------CCCCcEEEEEeeCCC-CCccccccCCCccccccccCCCC-HHHHHHHH
Q 007367 382 GGGNDEREQTINQLLTEMDGF-----------SGNSGVIVLAATNRP-DVLDSALLRPGRFDRQVTVDRPD-VAGRVKIL 448 (606)
Q Consensus 382 ~~~~~e~~~~Ln~LL~eld~~-----------~~~~~ViVIaaTN~p-~~LD~aLlRpgRFd~~I~v~~Pd-~~eR~~IL 448 (606)
.+++.|+..|+.- ....++++|+++|.. ..+.++|+. ||+.+|.++.+. .+++.+++
T Consensus 141 --------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 141 --------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred --------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 3556666666421 112458999999864 358889999 999888888774 57777777
Q ss_pred HHHhcC-------------------------------CCCCCcccHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHHhCC
Q 007367 449 QVHSRG-------------------------------KALAKDVDFEKISRRT--PGF-TGADLQNLMNEAAILAARRDL 494 (606)
Q Consensus 449 ~~~l~~-------------------------------~~l~~dvdl~~La~~t--~G~-SgaDL~~Lv~eA~~~A~rr~~ 494 (606)
+..... ..+ .+..+..++..+ .|. +.+....+++-|..+|+.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr 289 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRI-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGR 289 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 643210 001 111123333322 133 456666788889899999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 007367 495 KEISKDEISDALERII 510 (606)
Q Consensus 495 ~~It~edl~~Al~ri~ 510 (606)
..|+.+|+.+|++-++
T Consensus 290 ~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 290 RRVTAEDVREAAELVL 305 (633)
T ss_pred CcCCHHHHHHHHHHHh
Confidence 9999999999998776
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.33 E-value=2.2e-11 Score=143.79 Aligned_cols=195 Identities=23% Similarity=0.283 Sum_probs=127.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH---
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKG-CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--- 341 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~g-VLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~--- 341 (606)
+.|+|++++.+.+.+.+...+..-.+ ...|.+ +||+||+|||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 35899999988888877653221111 123555 7999999999999999999988 457899999988653
Q ss_pred ---------HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--C------
Q 007367 342 ---------FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--G------ 404 (606)
Q Consensus 342 ---------~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--~------ 404 (606)
|+|.... ..+.+..+++..+||+|||||... . .+.+.|++.+|.-. .
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~-----------~---~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH-----------P---DVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC-----------H---HHHHHHHHHhhcceeecCCCcEE
Confidence 2232211 123444566777999999999763 2 35556666665321 1
Q ss_pred -CCcEEEEEeeCCCC-----------------------------CccccccCCCccccccccCCCCHHHHHHHHHHHhcC
Q 007367 405 -NSGVIVLAATNRPD-----------------------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG 454 (606)
Q Consensus 405 -~~~ViVIaaTN~p~-----------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~ 454 (606)
-.+.+||.|||... .+.|+++. |++ +|.|.+.+.++..+|+...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 14578999998421 13456666 887 8899999999999999876533
Q ss_pred C--------CCCCcc---cHHHHHHhCCC--CCHHHHHHHHHHHH
Q 007367 455 K--------ALAKDV---DFEKISRRTPG--FTGADLQNLMNEAA 486 (606)
Q Consensus 455 ~--------~l~~dv---dl~~La~~t~G--~SgaDL~~Lv~eA~ 486 (606)
. ++.-.+ -.+.|+....+ +-.+.|+++++.-.
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 1 221112 24556655432 45677777666543
No 155
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=4.8e-11 Score=127.87 Aligned_cols=190 Identities=17% Similarity=0.200 Sum_probs=127.1
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------Ceeee---
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFSC--- 333 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~-------pfi~v--- 333 (606)
.+..|++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 467899999999999888877653 245678999999999999999999998754 11110
Q ss_pred -chhhHHHH-------H--h-------------hhhhHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCCCCCCh
Q 007367 334 -AASEFVEL-------F--V-------------GVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGND 386 (606)
Q Consensus 334 -s~se~~~~-------~--~-------------G~~~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~ 386 (606)
.|..+... + + ..+...+|++.+... .+...|++|||+|.+.
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 11111000 0 0 011234555444333 2345699999999993
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHH
Q 007367 387 EREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKI 466 (606)
Q Consensus 387 e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~L 466 (606)
....|.||..++... .+.++|..|+.++.+.+.+++ |+ ..+.+++|+.++..++|+.......+ .+..+..+
T Consensus 155 --~~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHH
Confidence 245677888888633 345666667888888899988 76 59999999999999999875433221 12235566
Q ss_pred HHhCCCCCHHHHHHHHHHH
Q 007367 467 SRRTPGFTGADLQNLMNEA 485 (606)
Q Consensus 467 a~~t~G~SgaDL~~Lv~eA 485 (606)
++.+.| +++...++++..
T Consensus 227 ~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred HHHcCC-CHHHHHHHHhcC
Confidence 666654 777766666543
No 156
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.30 E-value=1.6e-11 Score=137.70 Aligned_cols=210 Identities=21% Similarity=0.270 Sum_probs=132.7
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHH-
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF- 342 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~- 342 (606)
++.+++|.....+.+.+.+..+... +..|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6789999999998888887765432 4479999999999999999998764 5799999998764422
Q ss_pred ----hhhh------h-HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCC----CC
Q 007367 343 ----VGVG------A-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFS----GN 405 (606)
Q Consensus 343 ----~G~~------~-~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~----~~ 405 (606)
.|.. + ......|+.+..+ .|||||||.+. ...+..+..+++.-. ... ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~gG---tL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADGG---TLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCCC---EEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 2210 0 0112245555444 89999999993 333444444443211 111 12
Q ss_pred CcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHh----cCCC---C-CCcccHHHH
Q 007367 406 SGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHS----RGKA---L-AKDVDFEKI 466 (606)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l----~~~~---l-~~dvdl~~L 466 (606)
.++.+|++||..- ..+...|+|.. .+.+..|...+|.+ ++++++ ++.+ . ..+..+..|
T Consensus 321 ~~~RiI~~t~~~l---~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 321 VDVRVIAATNRDL---REEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred cceEEEEecCCCH---HHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3588999998753 22333344432 56788899988865 222222 2211 1 122235677
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHhCCC---CCCHHHHH
Q 007367 467 SRRTPGFTGADLQNLMNEAAILAARRDLK---EISKDEIS 503 (606)
Q Consensus 467 a~~t~G~SgaDL~~Lv~eA~~~A~rr~~~---~It~edl~ 503 (606)
....+-.+.++|++++++|+..+...... .|+.+++.
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 77777779999999999998876432111 35555543
No 157
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.29 E-value=2.5e-11 Score=129.10 Aligned_cols=192 Identities=21% Similarity=0.245 Sum_probs=119.3
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh----
Q 007367 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV---- 343 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~---- 343 (606)
++|...+.+.+.+.+..+... ...|||+|++||||+++|++|.... +.||+.++|..+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 578888888877777665332 3479999999999999999997644 57999999976543221
Q ss_pred -hhh------h-HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cC----CCCCcEE
Q 007367 344 -GVG------A-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GF----SGNSGVI 409 (606)
Q Consensus 344 -G~~------~-~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~----~~~~~Vi 409 (606)
|.. + .....+|+.+.. .+|||||||.|. ...+..+..+|+.-. .. ....++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~g---GtL~Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERADG---GTLFLDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhCCC---CEEEeCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 210 0 111234555544 499999999993 333444444443311 10 1124588
Q ss_pred EEEeeCCCC-------CccccccCCCccccccccCCCCHHHHHH----HHHHHh----cCCCC-----CCcccHHHHHHh
Q 007367 410 VLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHS----RGKAL-----AKDVDFEKISRR 469 (606)
Q Consensus 410 VIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l----~~~~l-----~~dvdl~~La~~ 469 (606)
+|++|+..- .+.+.|.. |+. .+.+..|...+|.+ +++.++ .+.+. ..+..+..|...
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 999998642 22333333 332 46777888888865 222322 21111 123335677777
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 007367 470 TPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 470 t~G~SgaDL~~Lv~eA~~~A 489 (606)
.+-.+.++|++++++++..+
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCchHHHHHHHHHHHHHhC
Confidence 77779999999999987765
No 158
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=1.5e-11 Score=132.56 Aligned_cols=200 Identities=23% Similarity=0.307 Sum_probs=130.3
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHH---h-cCCCeeeechhhHHH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG---E-AGVPFFSCAASEFVE 340 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~---e-~g~pfi~vs~se~~~ 340 (606)
...+++++|.+...+++++-+..+-. ....||++|++||||+++|+.|.. . .+.||+.+||..+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAP----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCC----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 46799999999998888877766322 134689999999999999999954 2 467999999988764
Q ss_pred HHh-----h------h-hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc--CC---
Q 007367 341 LFV-----G------V-GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG--FS--- 403 (606)
Q Consensus 341 ~~~-----G------~-~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~--~~--- 403 (606)
... | . ....-..+|++|..+ +||+|||+.+ ..+.+..+-.+|.+-.- +.
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCCC
Confidence 322 1 1 233345688888777 9999999998 34455555555554211 21
Q ss_pred -CCCcEEEEEeeCCCC--Cccc--cccCCCccccccccCCCCHHHHHH----HH----HHHhcCCCCCCcc----cHHHH
Q 007367 404 -GNSGVIVLAATNRPD--VLDS--ALLRPGRFDRQVTVDRPDVAGRVK----IL----QVHSRGKALAKDV----DFEKI 466 (606)
Q Consensus 404 -~~~~ViVIaaTN~p~--~LD~--aLlRpgRFd~~I~v~~Pd~~eR~~----IL----~~~l~~~~l~~dv----dl~~L 466 (606)
...+|.+|+|||..- .+-. .+.++ |+ .+.+.+|+.++|.. ++ +.++++.+..... -...|
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 234689999988531 1212 33321 22 45677788888854 22 2333444433222 24455
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHH
Q 007367 467 SRRTPGFTGADLQNLMNEAAILAAR 491 (606)
Q Consensus 467 a~~t~G~SgaDL~~Lv~eA~~~A~r 491 (606)
.....-.+.++|+|+|++++..+..
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 5555556899999999999877743
No 159
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.28 E-value=1.5e-11 Score=141.52 Aligned_cols=213 Identities=20% Similarity=0.270 Sum_probs=134.8
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH-
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE- 340 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~- 340 (606)
..+|++++|.+...+++.+.+..+... ...|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 457999999999988777766654322 3469999999999999999998764 57999999976542
Q ss_pred ----HHhhhh--h--HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCC----CC
Q 007367 341 ----LFVGVG--A--SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSG----NS 406 (606)
Q Consensus 341 ----~~~G~~--~--~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~----~~ 406 (606)
.+.|.. . ......|+.|. ..+|||||||.+. ...+..+..+|+.-. .... ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 222211 0 01111344443 3499999999983 334444444443211 0111 12
Q ss_pred cEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHhc----CC--CC-CCcccHHHHHH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSR----GK--AL-AKDVDFEKISR 468 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l~----~~--~l-~~dvdl~~La~ 468 (606)
++.+|++|+..- ..+...|+|.. .+.+.+|...+|.+ +++.++. +. .+ ..+..+..|..
T Consensus 457 ~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 578999998653 23333345532 56778899988854 2333322 11 11 12334667777
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007367 469 RTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 469 ~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ 507 (606)
..+..+.++|++++++++..+ ....|+.+|+...+.
T Consensus 534 y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHLF 569 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhhh
Confidence 777779999999999987654 345788888876653
No 160
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.28 E-value=2.3e-10 Score=116.90 Aligned_cols=189 Identities=16% Similarity=0.247 Sum_probs=118.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC-Cee--e-----echhhHHHHH---hhhh---h------HHHHHHH-HHHHcCCC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGV-PFF--S-----CAASEFVELF---VGVG---A------SRVRDLF-EKAKSKAP 362 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~-pfi--~-----vs~se~~~~~---~G~~---~------~~vr~lF-~~A~~~aP 362 (606)
.++|+||+|+|||++++.+++++.. .+. . .+..++.... .|.. . ..+.+.+ .....+.+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999998752 221 1 1122222111 1111 0 1122212 23345677
Q ss_pred eEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC---Ccc----ccccCCCccccccc
Q 007367 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD---VLD----SALLRPGRFDRQVT 435 (606)
Q Consensus 363 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~---~LD----~aLlRpgRFd~~I~ 435 (606)
.+|+|||+|.+.. .....+..|..... .....+.|+.+ ..++ .+. ..+.+ |+...++
T Consensus 125 ~vliiDe~~~l~~-----------~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLTP-----------ELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCCH-----------HHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeee
Confidence 8999999998832 12222322222111 11122222332 3332 111 12444 7777889
Q ss_pred cCCCCHHHHHHHHHHHhcCCCC-----CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007367 436 VDRPDVAGRVKILQVHSRGKAL-----AKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (606)
Q Consensus 436 v~~Pd~~eR~~IL~~~l~~~~l-----~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri 509 (606)
+++.+.++..+++...++..+. -.+..++.|.+.+.|. ++.|..+|+.+...|..++.+.|+.+++++++..+
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999999988754322 2334577888888875 67799999999999999999999999999998875
No 161
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.28 E-value=5.5e-11 Score=132.64 Aligned_cols=209 Identities=23% Similarity=0.326 Sum_probs=132.8
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------------------
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA------------------ 326 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~------------------ 326 (606)
...|+||.|++.+++.+.-.+. ...+++|.||||||||++++.+++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 3589999999999766543321 12469999999999999999998622
Q ss_pred ----------CCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHH
Q 007367 327 ----------GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLL 396 (606)
Q Consensus 327 ----------g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL 396 (606)
..||...+++......+|.+...-...+..|..+ +|||||++.+. .. .+..|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~G---vLfLDEi~e~~-----------~~---~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNG---VLFLDELPEFK-----------RS---VLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCCC---eEecCChhhCC-----------HH---HHHHHH
Confidence 2355544444333333333222222345555544 99999999883 23 344444
Q ss_pred HHhccCC-----------CCCcEEEEEeeCCC------C-----------------CccccccCCCccccccccCCCCHH
Q 007367 397 TEMDGFS-----------GNSGVIVLAATNRP------D-----------------VLDSALLRPGRFDRQVTVDRPDVA 442 (606)
Q Consensus 397 ~eld~~~-----------~~~~ViVIaaTN~p------~-----------------~LD~aLlRpgRFd~~I~v~~Pd~~ 442 (606)
+.|+... -..++.+|+++|.- + .+...|++ |||.++.++.++.+
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 4443211 12468999999952 1 47788888 99999999877544
Q ss_pred H-------------HHHHHHH------HhcCC---CCCCcc-------------c----HHHHHHhCCCCCHHHHHHHHH
Q 007367 443 G-------------RVKILQV------HSRGK---ALAKDV-------------D----FEKISRRTPGFTGADLQNLMN 483 (606)
Q Consensus 443 e-------------R~~IL~~------~l~~~---~l~~dv-------------d----l~~La~~t~G~SgaDL~~Lv~ 483 (606)
+ |.++.+. .+++. .+...+ . +.... ...++|.|....+++
T Consensus 395 ~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~-~~~~lS~R~~~rilr 473 (499)
T TIGR00368 395 KLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGAL-NKLGLSSRATHRILK 473 (499)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHH-HhcCCCchHHHHHHH
Confidence 2 2233221 11111 111111 1 11122 223589999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 007367 484 EAAILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 484 eA~~~A~rr~~~~It~edl~~Al~ 507 (606)
-|..+|..++.+.|+.+|+.+|+.
T Consensus 474 vArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 474 VARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999974
No 162
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=8.2e-11 Score=132.05 Aligned_cols=209 Identities=24% Similarity=0.309 Sum_probs=138.1
Q ss_pred ccccccCCCCccccccccchHHHHHHHHHHHHhcCch--hh----hhc--------------C----CCC-CceEEEEcC
Q 007367 256 SKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPD--KY----TAL--------------G----AKI-PKGCLLVGP 310 (606)
Q Consensus 256 ~~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~--~~----~~l--------------G----~~~-p~gVLL~GP 310 (606)
.++|..+..+..|.|+.|-+..-+.+. .||+.++ .| .++ + .++ .+-+|||||
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L---~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gp 334 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRML---GWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGP 334 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHH---HHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecC
Confidence 347888888999999999998865554 4443332 11 111 0 122 257899999
Q ss_pred CCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHH--------cCCCeEEEEccccchhhccCCCCC
Q 007367 311 PGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAK--------SKAPCIVFIDEIDAVGRQRGAGLG 382 (606)
Q Consensus 311 PGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~--------~~aP~ILfIDEID~L~~~r~~~~~ 382 (606)
||-|||+||+.||+.+|+.++++++++-.. ...++..+..|- ...|.+|+|||||.-.
T Consensus 335 pGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------- 400 (877)
T KOG1969|consen 335 PGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------- 400 (877)
T ss_pred CCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc--------
Confidence 999999999999999999999999987433 222333222222 2568999999998642
Q ss_pred CCChhHHHHHHHHHHHhcc-------CCC---------CC---cEEEEEeeCCCCCccccccCCCccccccccCCCCHHH
Q 007367 383 GGNDEREQTINQLLTEMDG-------FSG---------NS---GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAG 443 (606)
Q Consensus 383 ~~~~e~~~~Ln~LL~eld~-------~~~---------~~---~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~e 443 (606)
...++.++..+.. -.. .. .--||+.||... -|+|+.---|..+|.|.+|...-
T Consensus 401 ------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~ 472 (877)
T KOG1969|consen 401 ------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSR 472 (877)
T ss_pred ------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhH
Confidence 2334444444331 111 00 135788888654 36665322588899999999888
Q ss_pred HHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC
Q 007367 444 RVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (606)
Q Consensus 444 R~~IL~~~l~~~~l~~dv-dl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~ 493 (606)
..+-|+..+.+.++..+. .+..|++.+. .||++.+|....++.+..
T Consensus 473 Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 473 LVERLNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLASNVD 519 (877)
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhcc
Confidence 888888777666654332 2455555555 599999999988887654
No 163
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=9.8e-11 Score=126.13 Aligned_cols=187 Identities=17% Similarity=0.174 Sum_probs=126.2
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-----------
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF----------- 331 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi----------- 331 (606)
..+.+++||+|++.+++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567899999999999998877664 245778999999999999999999997632110
Q ss_pred ----eechhhH--HH---------H---Hhh--------hhhHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCC
Q 007367 332 ----SCAASEF--VE---------L---FVG--------VGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGL 381 (606)
Q Consensus 332 ----~vs~se~--~~---------~---~~G--------~~~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~ 381 (606)
.-.|... +. . +.+ -....+|++.+.+. ...+.|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0011111 00 0 001 12344666555543 2457899999999983
Q ss_pred CCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc
Q 007367 382 GGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV 461 (606)
Q Consensus 382 ~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv 461 (606)
....|.||+.++. ...+.++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++...... ..+.
T Consensus 155 -------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~ 219 (365)
T PRK07471 155 -------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDD 219 (365)
T ss_pred -------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHH
Confidence 2567888888884 33456777888999989889888 65 68899999999999999875422 1122
Q ss_pred cHHHHHHhCCCCCHHHHHHHHH
Q 007367 462 DFEKISRRTPGFTGADLQNLMN 483 (606)
Q Consensus 462 dl~~La~~t~G~SgaDL~~Lv~ 483 (606)
.+..++..+.| ++.....+++
T Consensus 220 ~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 220 PRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHHcCC-CHHHHHHHhc
Confidence 23456555554 6665555543
No 164
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.27 E-value=9.1e-11 Score=134.01 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=66.9
Q ss_pred cEEEEEeeCCC--CCccccccCCCccc---ccccc--CCCC-HHHHHHHHHHH---hcCCCCCCccc---HHHHHH---h
Q 007367 407 GVIVLAATNRP--DVLDSALLRPGRFD---RQVTV--DRPD-VAGRVKILQVH---SRGKALAKDVD---FEKISR---R 469 (606)
Q Consensus 407 ~ViVIaaTN~p--~~LD~aLlRpgRFd---~~I~v--~~Pd-~~eR~~IL~~~---l~~~~l~~dvd---l~~La~---~ 469 (606)
++.+|+++|.. ..+++.|++ ||+ ..+.+ ..|+ .+.|.++++.. +++.+.....+ +..+.+ +
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57899999975 468999999 998 44444 3344 45555554432 22221111222 333332 1
Q ss_pred CC------CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 470 TP------GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 470 t~------G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
.. ..+.++|.+++++|...|..++...|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 11 245799999999998888888888999999999987653
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.27 E-value=8.7e-11 Score=139.03 Aligned_cols=166 Identities=21% Similarity=0.284 Sum_probs=110.7
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhcCCCCC-ceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHH-
Q 007367 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIP-KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF- 342 (606)
Q Consensus 268 f~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p-~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~- 342 (606)
++.|+|++.+.+.|.+.+...+..-.. ...| ..+||+||+|||||++|++||..+ +.+++.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~----~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSD----PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccC----CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 456899999999998888764321100 0123 368999999999999999999876 4689999999886532
Q ss_pred ----hhhh-----hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC--CC-------
Q 007367 343 ----VGVG-----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF--SG------- 404 (606)
Q Consensus 343 ----~G~~-----~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~--~~------- 404 (606)
.|.. ...-..+.+..+....+||||||++.+. . ...+.|+..++.- ..
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~-----------~---~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH-----------P---DVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----------H---HHHHHHHHHHhhCceecCCceEEe
Confidence 2111 0111112233334444899999999873 2 3455566655421 11
Q ss_pred CCcEEEEEeeCCCC-------------------------CccccccCCCccccccccCCCCHHHHHHHHHHHhc
Q 007367 405 NSGVIVLAATNRPD-------------------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 453 (606)
Q Consensus 405 ~~~ViVIaaTN~p~-------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~ 453 (606)
-.+.+||+|||... .+.|+|+. |+|.++.|.+++.++..+|++.++.
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 12467899999631 23467777 9999999999999999998887664
No 166
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.27 E-value=2.7e-11 Score=136.20 Aligned_cols=209 Identities=19% Similarity=0.239 Sum_probs=130.3
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
...+|++++|.+...+++.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 346899999999987777766654322 13459999999999999999986543 47999999987644
Q ss_pred HH-----hhhhh-------HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh--ccCC---
Q 007367 341 LF-----VGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM--DGFS--- 403 (606)
Q Consensus 341 ~~-----~G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el--d~~~--- 403 (606)
.. .|... .....+|+.+..+ .|||||||.+. ...+..+..+++.- ....
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G---tL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANGG---SVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCCC---EEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCCCCc
Confidence 22 22111 1112356666544 89999999993 33444444444431 1111
Q ss_pred -CCCcEEEEEeeCCCC-------CccccccCCCccccccccCCCCHHHHHH-H-------HHHHhcCCCC----CCcccH
Q 007367 404 -GNSGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK-I-------LQVHSRGKAL----AKDVDF 463 (606)
Q Consensus 404 -~~~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~-I-------L~~~l~~~~l----~~dvdl 463 (606)
...++.||++|+.+- .+.+.|.. |+. .+.+..|...+|.+ | ++.+..+.+. -.+.-+
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 123578899888653 12222333 332 46778888888864 2 2222222221 122235
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 007367 464 EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (606)
Q Consensus 464 ~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl 502 (606)
..|....+..+.++|++++.+|+..+ ....|+.+|+
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 66666666679999999999997764 3456888875
No 167
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.27 E-value=2.9e-11 Score=128.41 Aligned_cols=196 Identities=21% Similarity=0.232 Sum_probs=123.3
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH--
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL-- 341 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~-- 341 (606)
-+++++|.+...+.+.+.+..+.. .+..|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 367899999998888887776432 23479999999999999999997654 579999999876422
Q ss_pred ---Hhhhh-------hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc--CC----CC
Q 007367 342 ---FVGVG-------ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG--FS----GN 405 (606)
Q Consensus 342 ---~~G~~-------~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~--~~----~~ 405 (606)
+.|.. .......|+.+.. ..|||||||.+. ...+..+..++..-.. .. ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~g---GtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERADG---GTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhccCC---CeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 22211 0111234555543 389999999993 3334444444433110 01 11
Q ss_pred CcEEEEEeeCCCC-------CccccccCCCccccccccCCCCHHHHHH----HHHHHh----cCCCC-----CCcccHHH
Q 007367 406 SGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHS----RGKAL-----AKDVDFEK 465 (606)
Q Consensus 406 ~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l----~~~~l-----~~dvdl~~ 465 (606)
.++.||++|+..- .+.+.|.. ||. .+.+..|...+|.+ +++.++ ++.+. ..+..+..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 2578899888642 23344444 442 45677788888855 333332 22111 12223566
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHH
Q 007367 466 ISRRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 466 La~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
|....+-.+.++|++++++++..+
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhc
Confidence 777777779999999999987654
No 168
>PHA02244 ATPase-like protein
Probab=99.27 E-value=1.1e-10 Score=124.56 Aligned_cols=121 Identities=27% Similarity=0.411 Sum_probs=81.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH--hhh--hhHHHH--HHHHHHHcCCCeEEEEccccchhhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF--VGV--GASRVR--DLFEKAKSKAPCIVFIDEIDAVGRQ 376 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~--~G~--~~~~vr--~lF~~A~~~aP~ILfIDEID~L~~~ 376 (606)
..|||+||||||||++|+++|..++.||+.++.. .+.+ .|. ...... .++...+. ..+|||||++.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~~--GgvLiLDEId~a~-- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFKK--GGLFFIDEIDASI-- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHhhc--CCEEEEeCcCcCC--
Confidence 4689999999999999999999999999998843 1111 110 000111 23333333 4699999999873
Q ss_pred cCCCCCCCChhHHHHHHHHHHH--hc----cCCCCCcEEEEEeeCCC-----------CCccccccCCCccccccccCCC
Q 007367 377 RGAGLGGGNDEREQTINQLLTE--MD----GFSGNSGVIVLAATNRP-----------DVLDSALLRPGRFDRQVTVDRP 439 (606)
Q Consensus 377 r~~~~~~~~~e~~~~Ln~LL~e--ld----~~~~~~~ViVIaaTN~p-----------~~LD~aLlRpgRFd~~I~v~~P 439 (606)
......++.++.. ++ .+..+.++.+|+|+|.+ ..|++++++ ||- .|+++.|
T Consensus 194 ---------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 194 ---------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred ---------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 3334455555542 11 11234678999999973 468999999 994 7999999
Q ss_pred CH
Q 007367 440 DV 441 (606)
Q Consensus 440 d~ 441 (606)
+.
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 83
No 169
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.26 E-value=2.4e-10 Score=118.90 Aligned_cols=217 Identities=20% Similarity=0.294 Sum_probs=137.0
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechh----
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAAS---- 336 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~s---- 336 (606)
.-+|++.+++.|..+.+.+..|.. .-+.++||+|++|.|||++++.+.... .+|++.+.+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 468999999999999998888865 224469999999999999999998754 2577776652
Q ss_pred --hHHHHH---hhh-------hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC
Q 007367 337 --EFVELF---VGV-------GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG 404 (606)
Q Consensus 337 --e~~~~~---~G~-------~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~ 404 (606)
.|.... .|. ....-..+....+...+-+|+|||+|.+.. +...+....+|.|-...+.+
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa-------Gs~~~qr~~Ln~LK~L~NeL-- 179 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA-------GSYRKQREFLNALKFLGNEL-- 179 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc-------ccHHHHHHHHHHHHHHhhcc--
Confidence 222111 111 112222334455566777999999999853 22333444444443332222
Q ss_pred CCcEEEEEeeCCCC--CccccccCCCccccccccCCCCH-HHHHHHHHHHhcCCCCCC-----ccc-HHHHHHhCCCCCH
Q 007367 405 NSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVDRPDV-AGRVKILQVHSRGKALAK-----DVD-FEKISRRTPGFTG 475 (606)
Q Consensus 405 ~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~~Pd~-~eR~~IL~~~l~~~~l~~-----dvd-l~~La~~t~G~Sg 475 (606)
.-.++.+++-.... .-|+.+.+ ||+ .+.++.... ++-..++..+-...++.. +.+ ...|-..+.|. .
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-i 255 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-I 255 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-h
Confidence 12344455433322 24688888 995 444544332 344556655544333321 222 35666777775 5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 476 ADLQNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 476 aDL~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
+++.++++.|+..|.+.+.+.|+.+.++..
T Consensus 256 G~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 256 GELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 599999999999999999999999988653
No 170
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=1.3e-10 Score=137.81 Aligned_cols=201 Identities=18% Similarity=0.259 Sum_probs=128.9
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH----
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL---- 341 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~---- 341 (606)
+.|+|++.+.+.+.+.+...+..-. -..++...+||+||+|||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4699999999998887775321100 001233468999999999999999999976 468999999887542
Q ss_pred -Hhhhhh-----HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC--CC-------CC
Q 007367 342 -FVGVGA-----SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF--SG-------NS 406 (606)
Q Consensus 342 -~~G~~~-----~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~--~~-------~~ 406 (606)
+.|... .....+.+..+....+||||||||.+. . .+.+.||+.|+.- .. -.
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-----------~---~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-----------P---DVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-----------H---HHHHHHHHHHhcCceecCCCeEEecC
Confidence 122110 111233444455556799999999873 2 3455566655421 11 13
Q ss_pred cEEEEEeeCCCCC-------------------------ccccccCCCccccccccCCCCHHHHHHHHHHHhcC-------
Q 007367 407 GVIVLAATNRPDV-------------------------LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG------- 454 (606)
Q Consensus 407 ~ViVIaaTN~p~~-------------------------LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~------- 454 (606)
+.+||+|||.... +.|.|+. |+|.++.|.+++.++..+|+...+..
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~ 785 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAE 785 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999997321 2355665 99999999999999999998866531
Q ss_pred CCCC---CcccHHHHHHhCC--CCCHHHHHHHHHHHHHH
Q 007367 455 KALA---KDVDFEKISRRTP--GFTGADLQNLMNEAAIL 488 (606)
Q Consensus 455 ~~l~---~dvdl~~La~~t~--G~SgaDL~~Lv~eA~~~ 488 (606)
.++. .+..++.|++... .+..+.|++++++....
T Consensus 786 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 786 RKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred CCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 1111 1222455555532 45677777777766543
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.1e-10 Score=131.95 Aligned_cols=166 Identities=23% Similarity=0.349 Sum_probs=122.4
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs 334 (606)
.-+++-|+|.++.++.+.+++.. . ..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R---R---------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR---R---------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc---c---------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 45788899999886655554432 1 22345999999999999999999865 45677888
Q ss_pred hhhHHH--HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 007367 335 ASEFVE--LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (606)
Q Consensus 335 ~se~~~--~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIa 412 (606)
...++. .|.|+.+.+++.+.+..++..+.||||||||.+.+.-.... + .......+.-.|. ++.+.+|+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGeL~~IG 304 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGELRCIG 304 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCCeEEEE
Confidence 887764 68899999999999999988899999999999965422111 1 1222222222222 45688999
Q ss_pred eeCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcC
Q 007367 413 ATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG 454 (606)
Q Consensus 413 aTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~ 454 (606)
+|+..+ .=|+||-| || ..|.+.-|+.++-..||+-.-.+
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~ 348 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKER 348 (786)
T ss_pred eccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHH
Confidence 998544 24899999 99 58999999999999999865543
No 172
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.24 E-value=9.9e-11 Score=135.85 Aligned_cols=199 Identities=20% Similarity=0.327 Sum_probs=128.1
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
.+.+|++++|.+..++.+.+.+..+... ...|||+|++|||||++|++|.... +.||+.++|..+.+
T Consensus 371 ~n~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 371 VDSEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 3467999999999998888877764332 3479999999999999999997754 67999999976533
Q ss_pred H-----Hhhh------h-hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCC---
Q 007367 341 L-----FVGV------G-ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFS--- 403 (606)
Q Consensus 341 ~-----~~G~------~-~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~--- 403 (606)
. +.|. + .......|+.+.. .+|||||||.+. ...+..+..++..-. ...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~---GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADK---SSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCC---CeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCC
Confidence 2 2221 0 0112234555544 499999999983 333444444443311 111
Q ss_pred -CCCcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHh----cCCC--C--CCcccH
Q 007367 404 -GNSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHS----RGKA--L--AKDVDF 463 (606)
Q Consensus 404 -~~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l----~~~~--l--~~dvdl 463 (606)
...++.+|++|+..- ..+...|+|.. .+.+..|...+|.+ +++.++ ++.+ . .....+
T Consensus 507 ~~~~~~RiI~~t~~~l---~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 507 IIQTDVRLIAATNRDL---KKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred cccceEEEEEeCCCCH---HHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 124588999998753 22223334433 56788899998865 233332 2111 1 123346
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007367 464 EKISRRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 464 ~~La~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
..|....+-.+.++|++++++|+..+
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 77777777779999999999998764
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.23 E-value=2e-10 Score=135.66 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=113.0
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH---
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK-GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--- 341 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~-gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~--- 341 (606)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||+|||||++|+++|+.+ +.+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4589999999998887764221100 012243 57999999999999999999987 468999998887532
Q ss_pred --Hhhhh-----hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC---------CC
Q 007367 342 --FVGVG-----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GN 405 (606)
Q Consensus 342 --~~G~~-----~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~---------~~ 405 (606)
+.|.. ......+.+..+....+||+|||+|.+.+ .+.+.|++.||.-. .-
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~--------------~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP--------------DIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH--------------HHHHHHHHHhccCceecCCCcEEec
Confidence 22211 11123455556666568999999998732 35666777766421 12
Q ss_pred CcEEEEEeeCCCCC-------------------------------------ccccccCCCccccccccCCCCHHHHHHHH
Q 007367 406 SGVIVLAATNRPDV-------------------------------------LDSALLRPGRFDRQVTVDRPDVAGRVKIL 448 (606)
Q Consensus 406 ~~ViVIaaTN~p~~-------------------------------------LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL 448 (606)
.+.++|+|||.... +.|.++. |+|.+|.|.+.+.++..+|+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHH
Confidence 46899999985321 1234555 89999999999999999998
Q ss_pred HHHhc
Q 007367 449 QVHSR 453 (606)
Q Consensus 449 ~~~l~ 453 (606)
+..+.
T Consensus 729 ~~~l~ 733 (821)
T CHL00095 729 EIMLK 733 (821)
T ss_pred HHHHH
Confidence 87664
No 174
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=3.5e-10 Score=120.10 Aligned_cols=128 Identities=35% Similarity=0.472 Sum_probs=87.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH--HhhhhhHHHH------------HHHHHHHcCCCeEEEEc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL--FVGVGASRVR------------DLFEKAKSKAPCIVFID 368 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~--~~G~~~~~vr------------~lF~~A~~~aP~ILfID 368 (606)
+++||.||||||||++|+.+|..++.+|+.+.|...... ..|...-..+ -+|.... +|+|+|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 468999999999999999999999999999999754431 2221111100 0111111 499999
Q ss_pred cccchhhccCCCCCCCChhHHHHHHHHHHHhcc----------CCCCCcEEEEEeeC-----CCCCccccccCCCccccc
Q 007367 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG----------FSGNSGVIVLAATN-----RPDVLDSALLRPGRFDRQ 433 (606)
Q Consensus 369 EID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~----------~~~~~~ViVIaaTN-----~p~~LD~aLlRpgRFd~~ 433 (606)
||+... . .+.+.||..|+. +.-...++||+|.| ....|++++++ ||...
T Consensus 120 EInra~-----------p---~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~ 183 (329)
T COG0714 120 EINRAP-----------P---EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLR 183 (329)
T ss_pred ccccCC-----------H---HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEE
Confidence 998873 2 355555665554 22345789999999 34468999999 99889
Q ss_pred cccCCCCHHH-HHHHHHH
Q 007367 434 VTVDRPDVAG-RVKILQV 450 (606)
Q Consensus 434 I~v~~Pd~~e-R~~IL~~ 450 (606)
++++.|+.++ ...++..
T Consensus 184 ~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 184 IYVDYPDSEEEERIILAR 201 (329)
T ss_pred EecCCCCchHHHHHHHHh
Confidence 9999995444 4444443
No 175
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.20 E-value=1.4e-10 Score=130.11 Aligned_cols=219 Identities=19% Similarity=0.221 Sum_probs=130.8
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhh--cCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-Ceeee---chhhHHHHHh
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTA--LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-PFFSC---AASEFVELFV 343 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~--lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~-pfi~v---s~se~~~~~~ 343 (606)
+|.|++.+|..+.-. .+........ ...+-..+|||+|+||||||++||++++.... .|+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~--l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLL--LFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHH--HhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 588999987665332 2221111111 11223347999999999999999999987653 33321 2222211000
Q ss_pred h---hhhHHHH-HHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-----------CCCcE
Q 007367 344 G---VGASRVR-DLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSGV 408 (606)
Q Consensus 344 G---~~~~~vr-~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-----------~~~~V 408 (606)
. .+...++ ..+..|.. .+++|||+|.+.. . ....|+..|+.-. -+.++
T Consensus 282 ~~~~~g~~~~~~G~l~~A~~---Gil~iDEi~~l~~-----------~---~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 282 RDPETREFTLEGGALVLADN---GVCCIDEFDKMDD-----------S---DRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred EccCcceEEecCccEEecCC---CEEEEechhhCCH-----------H---HHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 0 0000000 11222322 4999999999832 2 3344455554321 12468
Q ss_pred EEEEeeCCCC-------------CccccccCCCcccccc-ccCCCCHHHHHHHHHHHhcCCC-------------C----
Q 007367 409 IVLAATNRPD-------------VLDSALLRPGRFDRQV-TVDRPDVAGRVKILQVHSRGKA-------------L---- 457 (606)
Q Consensus 409 iVIaaTN~p~-------------~LD~aLlRpgRFd~~I-~v~~Pd~~eR~~IL~~~l~~~~-------------l---- 457 (606)
.||||+|..+ .|++++++ |||..+ ..+.|+.+...+|.++.+.... +
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEF 422 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHH
Confidence 8999999652 58999999 999855 5578899888888876432100 0
Q ss_pred ------------C---CcccHHHHHH-----h----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007367 458 ------------A---KDVDFEKISR-----R----------TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 458 ------------~---~dvdl~~La~-----~----------t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ 507 (606)
. .+...+.+.. + ..+.|.+.+..+++-|...|..+.++.++.+|+.+|++
T Consensus 423 l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~ 502 (509)
T smart00350 423 LRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIR 502 (509)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 0 0000111110 1 12458899999999999999999999999999999987
Q ss_pred HH
Q 007367 508 RI 509 (606)
Q Consensus 508 ri 509 (606)
-+
T Consensus 503 l~ 504 (509)
T smart00350 503 LL 504 (509)
T ss_pred HH
Confidence 54
No 176
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.19 E-value=2.1e-11 Score=120.73 Aligned_cols=143 Identities=28% Similarity=0.396 Sum_probs=70.6
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-------------------
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG------------------- 327 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g------------------- 327 (606)
.|+||+|++.+|..|.-...- ..++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 489999999999988754432 24799999999999999999987431
Q ss_pred ---------CCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH
Q 007367 328 ---------VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (606)
Q Consensus 328 ---------~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e 398 (606)
.||.....+.-....+|.+....-..+..|..+ |||+||+-.+ ...+++.|++-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~G---VLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRG---VLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTS---EEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCC---EEEechhhhc--------------CHHHHHHHHHH
Confidence 233333322222223333222122234445555 9999999766 34677888887
Q ss_pred hccCC-----------CCCcEEEEEeeCCC-----------------------CCccccccCCCccccccccCCCCHH
Q 007367 399 MDGFS-----------GNSGVIVLAATNRP-----------------------DVLDSALLRPGRFDRQVTVDRPDVA 442 (606)
Q Consensus 399 ld~~~-----------~~~~ViVIaaTN~p-----------------------~~LD~aLlRpgRFd~~I~v~~Pd~~ 442 (606)
|+.-. -..++++|+|.|.= ..|...|+. |||.++.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 76421 12357899999841 124555666 77777777655543
No 177
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.19 E-value=5.7e-10 Score=122.96 Aligned_cols=212 Identities=18% Similarity=0.164 Sum_probs=125.3
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeechhh-HHHHHhhhh
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASE-FVELFVGVG 346 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~se-~~~~~~G~~ 346 (606)
.|+|.+++.+.+..++. ...++||+||||||||++|++++...+. +|....+.- ..+...|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 37788877555433221 1346899999999999999999987643 555444321 112222211
Q ss_pred -hHHH--HHHHHHHHcC---CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--CC------CcEEEEE
Q 007367 347 -ASRV--RDLFEKAKSK---APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--GN------SGVIVLA 412 (606)
Q Consensus 347 -~~~v--r~lF~~A~~~---aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--~~------~~ViVIa 412 (606)
.... ..-|.....+ ...+||+|||..+.+ .+++.||..|+.-. .. ...++++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp--------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP--------------AILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCH--------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 0111 1123222221 234999999987632 46667777773211 10 1134455
Q ss_pred eeCCCC---CccccccCCCccccccccCCCC-HHHHHHHHHHHhcC--CCCC-----Cccc-------------------
Q 007367 413 ATNRPD---VLDSALLRPGRFDRQVTVDRPD-VAGRVKILQVHSRG--KALA-----KDVD------------------- 462 (606)
Q Consensus 413 aTN~p~---~LD~aLlRpgRFd~~I~v~~Pd-~~eR~~IL~~~l~~--~~l~-----~dvd------------------- 462 (606)
|||... ...+++.. ||-..+.++.|+ .++-.+++...... .... ...+
T Consensus 153 ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~e 230 (498)
T PRK13531 153 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFE 230 (498)
T ss_pred ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHH
Confidence 557422 13348888 998889999997 45557777653211 1110 0000
Q ss_pred -HHHHHHh---CC---CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007367 463 -FEKISRR---TP---GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAG 512 (606)
Q Consensus 463 -l~~La~~---t~---G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g 512 (606)
+..|... +. ..|+|--..+++-+...|...++..++.+|+. .+..+++.
T Consensus 231 yI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 231 LIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 1223321 22 26888999999999999999999999999999 66665553
No 178
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.19 E-value=9.9e-11 Score=104.28 Aligned_cols=126 Identities=32% Similarity=0.439 Sum_probs=82.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC---eeeechhhHHHHH--------------hhhhhHHHHHHHHHHHcCCCeE
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVP---FFSCAASEFVELF--------------VGVGASRVRDLFEKAKSKAPCI 364 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~p---fi~vs~se~~~~~--------------~G~~~~~vr~lF~~A~~~aP~I 364 (606)
+..++|+||||||||++++.+|..+... +++++++...... ........+.+++.++...+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4578999999999999999999998775 8888887543321 1234556778888888877899
Q ss_pred EEEccccchhhccCCCCCCCChhHHHHHHHH--HHHhccCCCCCcEEEEEeeCC-CCCccccccCCCccccccccCCC
Q 007367 365 VFIDEIDAVGRQRGAGLGGGNDEREQTINQL--LTEMDGFSGNSGVIVLAATNR-PDVLDSALLRPGRFDRQVTVDRP 439 (606)
Q Consensus 365 LfIDEID~L~~~r~~~~~~~~~e~~~~Ln~L--L~eld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRFd~~I~v~~P 439 (606)
|||||++.+..... ....... ...........+..+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999999854321 1111100 000111122345688888886 3334444444 88888777654
No 179
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=3.1e-10 Score=119.58 Aligned_cols=169 Identities=16% Similarity=0.285 Sum_probs=117.1
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------eeeechhhH
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP--------FFSCAASEF 338 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p--------fi~vs~se~ 338 (606)
+|+||+|++.+++.|...+.. .+.|+.+||+||+|+|||++|+++|+.+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 699999999999888776642 2456778999999999999999999976332 12221100
Q ss_pred HHHHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 007367 339 VELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaT 414 (606)
+ ...+...+|++.+.+.. ....|++|||+|.+. ....|.||..++. +..++++|.+|
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEe--pp~~t~~il~~ 130 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEE--PPKGVFIILLC 130 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEe
Confidence 0 11123456776665432 334699999999983 2467889999985 34456666666
Q ss_pred CCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCC
Q 007367 415 NRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPG 472 (606)
Q Consensus 415 N~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G 472 (606)
+.++.+.+.+++ |+ .++.+..|+.++....++..... . .+.++..++..+.|
T Consensus 131 ~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 131 ENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred CChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 888999999998 55 58999999999988888765532 2 23335556666554
No 180
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.18 E-value=2.6e-10 Score=111.20 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=99.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC-------e-eeechhhHHHH---------H--hhhhhHHHHHHHHHHHc-
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------F-FSCAASEFVEL---------F--VGVGASRVRDLFEKAKS- 359 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~p-------f-i~vs~se~~~~---------~--~G~~~~~vr~lF~~A~~- 359 (606)
+.|..+||+||+|+|||++|+.++.++... . ...+|..+... . ...+...++++.+.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 457789999999999999999999987432 0 00111111000 0 01123456666666654
Q ss_pred ---CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCcccccccc
Q 007367 360 ---KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTV 436 (606)
Q Consensus 360 ---~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v 436 (606)
....|++|||+|.+.. ...+.||..|+... ...++|.+|+.++.+.+++++ |+ ..+.+
T Consensus 92 ~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNE--------------AAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred cccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 3356999999999832 34677888887633 345666667777899999998 66 48999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCC
Q 007367 437 DRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPG 472 (606)
Q Consensus 437 ~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G 472 (606)
++|+.++..++++.. ++ .+..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 999999999998876 23 23345666666654
No 181
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-10 Score=134.32 Aligned_cols=161 Identities=24% Similarity=0.365 Sum_probs=114.0
Q ss_pred cccccchHHHHHHHHHHHH----hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeeeechhhHHHH
Q 007367 269 ADVAGADQAKLELQEVVDF----LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFVEL 341 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~----Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~se~~~~ 341 (606)
+.|+|++++...+.+.+.. |++|.+ |-...||.||+|+|||.||+++|..+. ..++.+++|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~r-------PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNR-------PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCC-------CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 3489999999988888775 344432 224678899999999999999999996 79999999999874
Q ss_pred H-----hhhhhHHH-----HHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--CC----
Q 007367 342 F-----VGVGASRV-----RDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--GN---- 405 (606)
Q Consensus 342 ~-----~G~~~~~v-----r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--~~---- 405 (606)
+ .|.....| ..+-+..+++..|||++|||+.-.+ .++|-||+.||.=. ..
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp--------------dV~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP--------------DVFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH--------------HHHHHHHHHhcCCeeecCCCCE
Confidence 3 22211111 2244455566679999999988633 58888999887531 11
Q ss_pred ---CcEEEEEeeCCCCC----------------------------ccccccCCCccccccccCCCCHHHHHHHHHHHh
Q 007367 406 ---SGVIVLAATNRPDV----------------------------LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (606)
Q Consensus 406 ---~~ViVIaaTN~p~~----------------------------LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l 452 (606)
.+.+||+|||--.. ..|.++. |+|.+|.|...+.+...+|+..++
T Consensus 630 VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 630 VDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred EecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 24799999994210 2344555 777778887777777777777665
No 182
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=5.9e-10 Score=117.88 Aligned_cols=184 Identities=16% Similarity=0.230 Sum_probs=125.4
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe----------eeechh
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF----------FSCAAS 336 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf----------i~vs~s 336 (606)
.|+||+|++++++.|.+.+..- +.|.++||+||+|+||+++|+++|+.+-+.- ...+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5899999999999998887642 4466789999999999999999998763221 011111
Q ss_pred hHH---------H-----H---Hhh--------hhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChh
Q 007367 337 EFV---------E-----L---FVG--------VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDE 387 (606)
Q Consensus 337 e~~---------~-----~---~~G--------~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e 387 (606)
++. + . ..| -....+|++.+.+.. ....|++||++|.+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 111 0 0 000 012356666655543 345699999999983
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHH
Q 007367 388 REQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIS 467 (606)
Q Consensus 388 ~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La 467 (606)
....|.||+.|+... +.++|..|+.++.|-+.+++ |+ ..+.|+.++.++..++|......... +.+...++
T Consensus 138 -~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 246788999998644 33566677888999999999 65 68999999999999999876432221 22246676
Q ss_pred HhCCCCCHHHHHHHHHH
Q 007367 468 RRTPGFTGADLQNLMNE 484 (606)
Q Consensus 468 ~~t~G~SgaDL~~Lv~e 484 (606)
....| ++++..++++.
T Consensus 209 ~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 209 ALAQG-SPGAAIANIEQ 224 (314)
T ss_pred HHcCC-CHHHHHHHHHH
Confidence 66665 77666665543
No 183
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.15 E-value=7.4e-10 Score=115.74 Aligned_cols=150 Identities=23% Similarity=0.309 Sum_probs=101.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------------------
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG--------------------- 327 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g--------------------- 327 (606)
++++|.+++...+...+..-. +.|..+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 367788888766665444211 3455799999999999999999999886
Q ss_pred ---CCeeeechhhHHHHHhhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc
Q 007367 328 ---VPFFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (606)
Q Consensus 328 ---~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld 400 (606)
-.+++++.++-... ......++++-+.... ....|++|||+|.+.. ...|.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhc
Confidence 34556665543221 0123345554444432 2356999999999943 56788888888
Q ss_pred cCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHH
Q 007367 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQ 449 (606)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~ 449 (606)
. ...+..+|.+||.++.+-+.+++ |+ ..+.|++|+...+....+
T Consensus 135 e--p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 E--PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred c--CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 4 44567888889999999889998 55 467777655544444333
No 184
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.15 E-value=9.2e-11 Score=113.26 Aligned_cols=135 Identities=28% Similarity=0.420 Sum_probs=86.6
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH-----H
Q 007367 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL-----F 342 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~-----~ 342 (606)
|+|.+...+++.+.+..+... +..|||+|++||||+++|++|.+.. +.||+.++|+.+.+. .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578888888888777654332 4579999999999999999998865 579999999876543 2
Q ss_pred hhhhh-------HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc--CCC----CCcEE
Q 007367 343 VGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG--FSG----NSGVI 409 (606)
Q Consensus 343 ~G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~--~~~----~~~Vi 409 (606)
.|... .....+|++|..+ +||||||+.| +...+..+.++|+.-.. ... ..++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 33211 1233688888877 9999999999 34445555555554221 111 23689
Q ss_pred EEEeeCCCCCccccccCCCcccc
Q 007367 410 VLAATNRPDVLDSALLRPGRFDR 432 (606)
Q Consensus 410 VIaaTN~p~~LD~aLlRpgRFd~ 432 (606)
||++|+.+- ..+...|+|..
T Consensus 137 iI~st~~~l---~~~v~~g~fr~ 156 (168)
T PF00158_consen 137 IIASTSKDL---EELVEQGRFRE 156 (168)
T ss_dssp EEEEESS-H---HHHHHTTSS-H
T ss_pred EEeecCcCH---HHHHHcCCChH
Confidence 999999643 34445567753
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=8.5e-10 Score=125.93 Aligned_cols=259 Identities=12% Similarity=0.135 Sum_probs=142.2
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee-echh
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS-CAAS 336 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~-vs~s 336 (606)
.+..+..+.+++||+|+++..++|+.++.-...+ ....+.++|+||||||||++++.+|++++..+++ .+..
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 4555677899999999999988877766543221 2223458999999999999999999998876544 2211
Q ss_pred h---HH----------HHH--hhhhhHHHHHHHHHHH----------cCCCeEEEEccccchhhccCCCCCCCChhHHHH
Q 007367 337 E---FV----------ELF--VGVGASRVRDLFEKAK----------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQT 391 (606)
Q Consensus 337 e---~~----------~~~--~G~~~~~vr~lF~~A~----------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 391 (606)
. .. ..+ .......++.++..+. .....|||||||+.+... ....
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~ 214 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRA 214 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHH
Confidence 0 00 000 0112233445555443 134569999999987531 1123
Q ss_pred HHHHHH-HhccCCCCCcEEEEEeeC-CCC--------------CccccccCCCccccccccCCCCHHHHHHHHHHHhcCC
Q 007367 392 INQLLT-EMDGFSGNSGVIVLAATN-RPD--------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK 455 (606)
Q Consensus 392 Ln~LL~-eld~~~~~~~ViVIaaTN-~p~--------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~ 455 (606)
+..+|. ... ....+.+|++++ .+. .|.+++++..|. .+|.|.+.......+.|+..+...
T Consensus 215 lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 215 LHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 444444 221 122333433333 221 133667643344 378999999999777777666432
Q ss_pred C--------CCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcCC--ccc-c
Q 007367 456 A--------LAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR-------DLKEISKDEISDALERIIAGP--EKK-N 517 (606)
Q Consensus 456 ~--------l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr-------~~~~It~edl~~Al~ri~~g~--e~~-~ 517 (606)
. +..+..+..|+....| |++.+++.....+.+. +...++..++..+..+...-. ++. -
T Consensus 291 ~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l 366 (637)
T TIGR00602 291 AKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEI 366 (637)
T ss_pred hhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHH
Confidence 1 1122345666665444 7777777665543322 223455555555443321100 000 0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhc
Q 007367 518 AVVSDEKKKLVAYHEAGHALVGALM 542 (606)
Q Consensus 518 ~~~s~~~~~~~A~hEaGhAlv~~ll 542 (606)
..+...+..+..+|-.|..|....-
T Consensus 367 ~~~~~rd~sl~lfhalgkily~Kr~ 391 (637)
T TIGR00602 367 QALGGKDVSLFLFRALGKILYCKRA 391 (637)
T ss_pred HhhccccchhHHHHHhChhhccccc
Confidence 0012223345667877777655443
No 186
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.13 E-value=6.1e-10 Score=111.05 Aligned_cols=203 Identities=19% Similarity=0.274 Sum_probs=124.4
Q ss_pred cccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----Ceeee
Q 007367 259 QEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-----PFFSC 333 (606)
Q Consensus 259 ~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~-----pfi~v 333 (606)
|..+..+..+.||+|.++..+.|.-+...-..| +++|.||||||||+.+.++|+++=. -++++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 555677899999999999988887666543333 4799999999999999999998732 35666
Q ss_pred chhhHHHHHhhhhhHHHHH---HHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCC
Q 007367 334 AASEFVELFVGVGASRVRD---LFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (606)
Q Consensus 334 s~se~~~~~~G~~~~~vr~---lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~ 406 (606)
++++- .|..-+|. .|.+-+-. .-.||++||.|.+. ...++.+ -..|+-+...
T Consensus 85 NASde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAl---RRtMEiyS~t- 143 (333)
T KOG0991|consen 85 NASDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQAL---RRTMEIYSNT- 143 (333)
T ss_pred cCccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHH---HHHHHHHccc-
Confidence 66652 23333443 44444332 22499999999983 2233443 3445444333
Q ss_pred cEEEEEeeCCCCCccccccCCCccccccccCCCCHHHH-HHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR-VKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNE 484 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR-~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~e 484 (606)
..+..++|..+.+=+.+.+ |+. .+.+...+..+. .++++. .+..++. .+..++.+.-...| |.++.+|.
T Consensus 144 -tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v-~k~Ekv~yt~dgLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 144 -TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEV-AKAEKVNYTDDGLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred -chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHH-HHHhCCCCCcchHHHhhhhccc----hHHHHHHH
Confidence 3577788988888788887 442 334444444433 333333 3222222 33346666665555 66666665
Q ss_pred HHHHHHHhCCCCCCHHHHHHH
Q 007367 485 AAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 485 A~~~A~rr~~~~It~edl~~A 505 (606)
. .+...+-..++.+.+-..
T Consensus 215 L--Qst~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 215 L--QSTVNGFGLVNQENVFKV 233 (333)
T ss_pred H--HHHhccccccchhhhhhc
Confidence 3 333445556666665443
No 187
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.12 E-value=6e-10 Score=118.29 Aligned_cols=66 Identities=39% Similarity=0.601 Sum_probs=51.8
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCeeeechhhHH
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFV 339 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g--~pfi~vs~se~~ 339 (606)
..+.++|+.++++..--+++.++..+. ..+++||.||||||||.||-++|+++| +||+.++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 456899999999999888888876542 357899999999999999999999996 899999888753
No 188
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.12 E-value=4e-10 Score=128.48 Aligned_cols=188 Identities=20% Similarity=0.267 Sum_probs=123.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeeeechhhHHHHHhhhh--hHHH--------HHHHHHHHcCCCeEEEEccc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVELFVGVG--ASRV--------RDLFEKAKSKAPCIVFIDEI 370 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g--~pfi~vs~se~~~~~~G~~--~~~v--------r~lF~~A~~~aP~ILfIDEI 370 (606)
.+|||.|+||||||++|++++..+. .||+.+......+...|.. ...+ ..++.++. ..+||||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~---~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAP---RGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCC---CCcEeccch
Confidence 4899999999999999999999764 4788887533333333321 0000 00122222 249999999
Q ss_pred cchhhccCCCCCCCChhHHHHHHHHHHHhccCC-----------CCCcEEEEEeeCCCC---CccccccCCCcccccccc
Q 007367 371 DAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSGVIVLAATNRPD---VLDSALLRPGRFDRQVTV 436 (606)
Q Consensus 371 D~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-----------~~~~ViVIaaTN~p~---~LD~aLlRpgRFd~~I~v 436 (606)
+.+.. .+++.|+..|+.-. ....+.||+++|..+ .|.++|+. ||+.++.+
T Consensus 94 ~rl~~--------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 94 NLLDD--------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhCCH--------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 99832 35555666664211 124588999999765 68899999 99987766
Q ss_pred C-CCCHHHHHHHHHHHhcCC-------------------------CCCCcccHHHHHHhC--CCCC-HHHHHHHHHHHHH
Q 007367 437 D-RPDVAGRVKILQVHSRGK-------------------------ALAKDVDFEKISRRT--PGFT-GADLQNLMNEAAI 487 (606)
Q Consensus 437 ~-~Pd~~eR~~IL~~~l~~~-------------------------~l~~dvdl~~La~~t--~G~S-gaDL~~Lv~eA~~ 487 (606)
. .|+.++|.+|++.+.... .+ .+..+..++..+ .|.+ .+.-..+++-|..
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i-~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA 236 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTI-SAEQVKELVLTAASLGISGHRADLFAVRAAKA 236 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccC-CHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 5 457788889887654211 11 111122333222 2333 5566678888999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH
Q 007367 488 LAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 488 ~A~rr~~~~It~edl~~Al~ri~ 510 (606)
.|+.+++..|+.+|+..++.-++
T Consensus 237 ~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 237 HAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998766
No 189
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.1e-09 Score=119.47 Aligned_cols=154 Identities=23% Similarity=0.385 Sum_probs=112.2
Q ss_pred HHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee-chhhHHHHHhhhhhHHHHHHHHHHHcCCC
Q 007367 284 VVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC-AASEFVELFVGVGASRVRDLFEKAKSKAP 362 (606)
Q Consensus 284 iv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v-s~se~~~~~~G~~~~~vr~lF~~A~~~aP 362 (606)
++..+++++.+ .-..+||.||||+|||.||-.+|...+.||+.+ +..+.+...-...-..++.+|+.|++..-
T Consensus 526 lv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 44445555542 345899999999999999999999999999975 44455443333345678999999999888
Q ss_pred eEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCC-cEEEEEeeCCCCCcc-ccccCCCccccccccCCCC
Q 007367 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS-GVIVLAATNRPDVLD-SALLRPGRFDRQVTVDRPD 440 (606)
Q Consensus 363 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~-~ViVIaaTN~p~~LD-~aLlRpgRFd~~I~v~~Pd 440 (606)
+||++|+|+.|..-- .-+....+.++..|+..+....+.+ +.+|++||.+.+.|. -.++. .|+..+.+|...
T Consensus 600 siivvDdiErLiD~v----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYV----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLT 673 (744)
T ss_pred eEEEEcchhhhhccc----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccC
Confidence 999999999996532 2346677788888888888776544 577788888766553 33445 798899987765
Q ss_pred H-HHHHHHHH
Q 007367 441 V-AGRVKILQ 449 (606)
Q Consensus 441 ~-~eR~~IL~ 449 (606)
. ++..+++.
T Consensus 674 ~~~~~~~vl~ 683 (744)
T KOG0741|consen 674 TGEQLLEVLE 683 (744)
T ss_pred chHHHHHHHH
Confidence 5 45555554
No 190
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.10 E-value=2.6e-09 Score=109.48 Aligned_cols=129 Identities=22% Similarity=0.320 Sum_probs=89.5
Q ss_pred CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC-------------CCCccccccCCC
Q 007367 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR-------------PDVLDSALLRPG 428 (606)
Q Consensus 362 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~-------------p~~LD~aLlRpg 428 (606)
|.||||||++.|. -+ .+..|-..++. .-.-+||.+||+ |.-+++.|+.
T Consensus 297 PGVLFIDEVhMLD-----------iE---cFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD-----------IE---CFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhhh-----------hH---HHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 6688888888772 12 23333333332 112266667774 3346677776
Q ss_pred ccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007367 429 RFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 429 RFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ 507 (606)
|. ..|..-+++.++.++|++...+..++.-+. .++.++..-..-|.+-..+++.-|.+.|...+++.|..+|++++-+
T Consensus 358 Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 358 RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHH
Confidence 55 466777788999999999988777665433 3677777766677888888888888999999999999999998866
Q ss_pred HHH
Q 007367 508 RII 510 (606)
Q Consensus 508 ri~ 510 (606)
-..
T Consensus 437 Lf~ 439 (456)
T KOG1942|consen 437 LFL 439 (456)
T ss_pred HHH
Confidence 543
No 191
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.10 E-value=6.6e-11 Score=109.35 Aligned_cols=112 Identities=33% Similarity=0.406 Sum_probs=69.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH--HHhhhhhH------HHHH-HHHHHHcCCCeEEEEccccchh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE--LFVGVGAS------RVRD-LFEKAKSKAPCIVFIDEIDAVG 374 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~--~~~G~~~~------~vr~-lF~~A~~~aP~ILfIDEID~L~ 374 (606)
+|||+||||||||++|+.+|+.++.+++.++++...+ .+.|.-.- .... +...++ .++|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 5899999999999999999999999999988875432 12221000 0000 111111 4679999999987
Q ss_pred hccCCCCCCCChhHHHHHHHHHHHhccC--------CCCC------cEEEEEeeCCCC----CccccccCCCcc
Q 007367 375 RQRGAGLGGGNDEREQTINQLLTEMDGF--------SGNS------GVIVLAATNRPD----VLDSALLRPGRF 430 (606)
Q Consensus 375 ~~r~~~~~~~~~e~~~~Ln~LL~eld~~--------~~~~------~ViVIaaTN~p~----~LD~aLlRpgRF 430 (606)
+.+....++.++..-... .... ++.+|+|+|..+ .++++|++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 233334444444431111 0111 489999999988 89999999 87
No 192
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.10 E-value=1.8e-09 Score=120.34 Aligned_cols=210 Identities=25% Similarity=0.315 Sum_probs=130.3
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC------------------
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG------------------ 327 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g------------------ 327 (606)
..|.++.|++.+++.+. +. +.....++|+||||+|||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al~----la----------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLE----IT----------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhh----ee----------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 48889999988765542 11 11234799999999999999999987431
Q ss_pred ----------CCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHH
Q 007367 328 ----------VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (606)
Q Consensus 328 ----------~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~ 397 (606)
.||.....+--....+|.+...-...+..|..+ +|||||++.+. . .++..|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~-----------~---~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFE-----------R---RTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCC-----------H---HHHHHHHH
Confidence 122222111111123333322223467777766 99999998872 2 34555555
Q ss_pred HhccCC-----------CCCcEEEEEeeCCCC---------------------CccccccCCCccccccccCCCCHHH--
Q 007367 398 EMDGFS-----------GNSGVIVLAATNRPD---------------------VLDSALLRPGRFDRQVTVDRPDVAG-- 443 (606)
Q Consensus 398 eld~~~-----------~~~~ViVIaaTN~p~---------------------~LD~aLlRpgRFd~~I~v~~Pd~~e-- 443 (606)
.|+.-. ...++.+|+|+|... .|+..+++ |||.++.++.|+.++
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILS 394 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHh
Confidence 553211 134689999999752 36778888 999999999885321
Q ss_pred --------HHHHHHH------H--hcCCCCCCcc-------------cHH---HHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 007367 444 --------RVKILQV------H--SRGKALAKDV-------------DFE---KISRRTPGFTGADLQNLMNEAAILAAR 491 (606)
Q Consensus 444 --------R~~IL~~------~--l~~~~l~~dv-------------dl~---~La~~t~G~SgaDL~~Lv~eA~~~A~r 491 (606)
..+|-+. . .++..+...+ ... .-+....|.|.|....+++-|...|..
T Consensus 395 ~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL 474 (506)
T PRK09862 395 KTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADI 474 (506)
T ss_pred cccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1111110 0 0000101111 011 112233468999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHH
Q 007367 492 RDLKEISKDEISDALER 508 (606)
Q Consensus 492 r~~~~It~edl~~Al~r 508 (606)
++++.|+.+|+.+|+.-
T Consensus 475 ~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 475 DQSDIITRQHLQEAVSY 491 (506)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 99999999999999863
No 193
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.9e-10 Score=122.58 Aligned_cols=210 Identities=25% Similarity=0.365 Sum_probs=125.2
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----------------
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG----------------- 327 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g----------------- 327 (606)
...|.||+|++.+|+.|.....- .+++|++||||||||++|+.+..-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 45899999999999998765543 24689999999999999999865321
Q ss_pred ------------CCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHH
Q 007367 328 ------------VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (606)
Q Consensus 328 ------------~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~L 395 (606)
.||..-..+.-....+|.+...--.-+..|.. .||||||+-.+ ..++++.|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~---GVLFLDElpef--------------~~~iLe~L 303 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHN---GVLFLDELPEF--------------KRSILEAL 303 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecC---CEEEeeccchh--------------hHHHHHHH
Confidence 12222211111112222221100111222333 39999999665 34688888
Q ss_pred HHHhccCC-----C------CCcEEEEEeeCCC-----------------------CCccccccCCCccccccccCCCCH
Q 007367 396 LTEMDGFS-----G------NSGVIVLAATNRP-----------------------DVLDSALLRPGRFDRQVTVDRPDV 441 (606)
Q Consensus 396 L~eld~~~-----~------~~~ViVIaaTN~p-----------------------~~LD~aLlRpgRFd~~I~v~~Pd~ 441 (606)
.+-|+.-. . ..++.+++++|.. ..|...|++ |+|..++++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 88776421 1 1246788888842 124456666 9999999998875
Q ss_pred HHH--------------HHHHHHH----hcCCCC--CC----------------cccHHHHHHhCCCCCHHHHHHHHHHH
Q 007367 442 AGR--------------VKILQVH----SRGKAL--AK----------------DVDFEKISRRTPGFTGADLQNLMNEA 485 (606)
Q Consensus 442 ~eR--------------~~IL~~~----l~~~~l--~~----------------dvdl~~La~~t~G~SgaDL~~Lv~eA 485 (606)
.++ ..+++.+ .+...+ .. +.++...+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 443 1222211 111111 11 12233333444467777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q 007367 486 AILAARRDLKEISKDEISDALE 507 (606)
Q Consensus 486 ~~~A~rr~~~~It~edl~~Al~ 507 (606)
..+|-..+.+.|...|+.+|+.
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHh
Confidence 7777777777788888877765
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.2e-10 Score=116.53 Aligned_cols=133 Identities=31% Similarity=0.438 Sum_probs=89.3
Q ss_pred ccc-cccchHHHHHHHHHHH-H---hcCchhhhhcCCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH-
Q 007367 268 FAD-VAGADQAKLELQEVVD-F---LKNPDKYTALGAKI-PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE- 340 (606)
Q Consensus 268 f~D-I~G~d~~K~eL~eiv~-~---Lk~p~~~~~lG~~~-p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~- 340 (606)
+++ |+|++.+|+.|.-.|. . +.+.+ ..-.... ..++||.||.|||||+||+.+|+.+++||-..++..+.+
T Consensus 59 Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~--~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 59 LDEYVIGQEQAKKVLSVAVYNHYKRLNNKE--DNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred hhhheecchhhhceeeeeehhHHHHHhccC--CCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 444 7899999987764332 1 11111 0001122 247999999999999999999999999999999999887
Q ss_pred HHhhhhhHH-HHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC
Q 007367 341 LFVGVGASR-VRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF 402 (606)
Q Consensus 341 ~~~G~~~~~-vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~ 402 (606)
.|+|+.-.+ +..++..|.. ....||+|||||.+.++....+-..+-..+.+...||..++|-
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 488875443 3444444321 1234999999999988765433222333456677788888774
No 195
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.07 E-value=8.1e-10 Score=121.40 Aligned_cols=207 Identities=18% Similarity=0.256 Sum_probs=127.4
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV 343 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~ 343 (606)
.+.+++|.....+.+.+.+..+... ...++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPS----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4567899888877777766543322 3468999999999999999997765 57999999987644322
Q ss_pred hh-----h-------hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCC----C
Q 007367 344 GV-----G-------ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSG----N 405 (606)
Q Consensus 344 G~-----~-------~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~----~ 405 (606)
.. . .......|+.+. ..+|||||||.+. ...+..+.+++..-. .... .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYAH---GGTLFLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeECC---CCEEEEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCceee
Confidence 11 0 011112233343 3499999999993 333444444444311 1111 1
Q ss_pred CcEEEEEeeCCCC-------CccccccCCCccccccccCCCCHHHHHH----HHHHHh----cCCCC----CCcccHHHH
Q 007367 406 SGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHS----RGKAL----AKDVDFEKI 466 (606)
Q Consensus 406 ~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l----~~~~l----~~dvdl~~L 466 (606)
.++.+|++|+..- .+.+.|.. |+ ..+.+..|...+|.+ +++.++ ...+. ..+..+..|
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRAL 349 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 2578899888653 12222322 22 246778899988875 233332 21111 123346777
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 007367 467 SRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (606)
Q Consensus 467 a~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~ 503 (606)
....+-.+.++|++++++|+..+ ....|+.+++.
T Consensus 350 ~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 350 EAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 77777779999999999998654 33567777764
No 196
>PRK04132 replication factor C small subunit; Provisional
Probab=99.06 E-value=2.1e-09 Score=125.71 Aligned_cols=170 Identities=21% Similarity=0.202 Sum_probs=124.7
Q ss_pred eEEEEc--CCCChHHHHHHHHHHhc-----CCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcC------CCeEEEEccc
Q 007367 304 GCLLVG--PPGTGKTLLARAVAGEA-----GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSK------APCIVFIDEI 370 (606)
Q Consensus 304 gVLL~G--PPGTGKT~LArAIA~e~-----g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~------aP~ILfIDEI 370 (606)
.-+..| |.+.|||++|+++|+++ +.+++++|+++..+ ...+|++.+.+... ...|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 346678 99999999999999997 56899999987432 23566665554322 2369999999
Q ss_pred cchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHH
Q 007367 371 DAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQV 450 (606)
Q Consensus 371 D~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~ 450 (606)
|.|.. ...+.|+..|+... .++.+|.+||.+..+.+++++ |+ ..+.|++|+.++....|+.
T Consensus 640 D~Lt~--------------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 640 DALTQ--------------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ccCCH--------------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 99932 35677888888543 467889999999999999998 65 6889999999999988888
Q ss_pred HhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007367 451 HSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISD 504 (606)
Q Consensus 451 ~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~ 504 (606)
.+++.++. ++..+..++..+.| +.+...++++.++.. ...|+.+++..
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~ 749 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFL 749 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 77655543 34457788887776 667777777655422 13466666544
No 197
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.4e-10 Score=115.93 Aligned_cols=82 Identities=32% Similarity=0.498 Sum_probs=63.2
Q ss_pred EEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--------CCCcEEEEEeeC----CCCCccccccCCCccc
Q 007367 364 IVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVLAATN----RPDVLDSALLRPGRFD 431 (606)
Q Consensus 364 ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--------~~~~ViVIaaTN----~p~~LD~aLlRpgRFd 431 (606)
|+||||||.++.+.+. ++.+-.++.+...||-.++|.. ..+++++||+-- .|.+|-|.|.- ||.
T Consensus 253 IvFIDEIDKIa~~~~~--g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 253 IVFIDEIDKIAKRGGS--GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred eEEEehhhHHHhcCCC--CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 9999999999876542 2224456677778888877752 235688888754 57778888875 999
Q ss_pred cccccCCCCHHHHHHHHH
Q 007367 432 RQVTVDRPDVAGRVKILQ 449 (606)
Q Consensus 432 ~~I~v~~Pd~~eR~~IL~ 449 (606)
-.+++...+.++-.+||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888875
No 198
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=3.3e-09 Score=112.86 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=107.1
Q ss_pred ccccccc-chHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe--e---eechh---h
Q 007367 267 TFADVAG-ADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF--F---SCAAS---E 337 (606)
Q Consensus 267 tf~DI~G-~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf--i---~vs~s---e 337 (606)
.|++|+| ++.+++.|+..+.. .+.|..+||+||+|+||+++|+++|+.+-++- - .-.|. .
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788998 88898888777653 24577889999999999999999999864321 0 00011 1
Q ss_pred HHH---------HHhh--hhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC
Q 007367 338 FVE---------LFVG--VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF 402 (606)
Q Consensus 338 ~~~---------~~~G--~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~ 402 (606)
+.. ...| .+...+|++.+.+.. ....|++|||+|.+. ....|.||..++.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLLK~LEE- 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLLKFLEE- 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHHHHhcC-
Confidence 100 0001 123456666655542 234599999999983 2467889999995
Q ss_pred CCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHH
Q 007367 403 SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQV 450 (606)
Q Consensus 403 ~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~ 450 (606)
+..++++|.+|+.+..|.+.+++ |. .++++..|+.++..++++.
T Consensus 137 -Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 44566777788888899999999 55 5789999999888777764
No 199
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.05 E-value=1.6e-09 Score=118.60 Aligned_cols=141 Identities=25% Similarity=0.389 Sum_probs=88.3
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------eeeec----hh
Q 007367 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSCA----AS 336 (606)
Q Consensus 268 f~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p-------fi~vs----~s 336 (606)
++++.+.++..+.+ +..+.. .++++|+||||||||++|+.+|..++.. ++.++ ..
T Consensus 174 l~d~~i~e~~le~l---~~~L~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETI---LKRLTI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHH---HHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 67777777664444 444332 3478999999999999999999887431 22232 22
Q ss_pred hHHHHHhh--hhh----HHHHHHHHHHHc--CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh---------
Q 007367 337 EFVELFVG--VGA----SRVRDLFEKAKS--KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM--------- 399 (606)
Q Consensus 337 e~~~~~~G--~~~----~~vr~lF~~A~~--~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el--------- 399 (606)
+|++.+.. .+- ..+.++...|+. ..|++||||||++-...+ ....++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------------hhhhhhhhcccccccccc
Confidence 44433211 111 123445566654 357999999999864322 222222222
Q ss_pred -----------ccCCCCCcEEEEEeeCCCC----CccccccCCCccccccccCC
Q 007367 400 -----------DGFSGNSGVIVLAATNRPD----VLDSALLRPGRFDRQVTVDR 438 (606)
Q Consensus 400 -----------d~~~~~~~ViVIaaTN~p~----~LD~aLlRpgRFd~~I~v~~ 438 (606)
+.+.-..++.||||+|..+ .+|.||+| ||. .|++.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 2344557899999999987 69999999 994 455543
No 200
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.8e-09 Score=113.44 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=108.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCe--ee------echhhHHH--------HH-----hhhhhHHHHHHHHHH
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF--FS------CAASEFVE--------LF-----VGVGASRVRDLFEKA 357 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf--i~------vs~se~~~--------~~-----~G~~~~~vr~lF~~A 357 (606)
.+.|.++||+||+|+|||++|+++|+.+.+.- -. -+|..+.. -. ...+...+|++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999999999875421 00 01111100 00 012345677776666
Q ss_pred Hc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccc
Q 007367 358 KS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQ 433 (606)
Q Consensus 358 ~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~ 433 (606)
.. ....|++|||+|.+. ....|.||+.++. +..++++|.+|+.++.|.+.+++ |+ ..
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~~ 159 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC-QQ 159 (328)
T ss_pred hhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc-ee
Confidence 53 345699999999993 3578899999995 44578888999999999999999 76 45
Q ss_pred cccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHH
Q 007367 434 VTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNL 481 (606)
Q Consensus 434 I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~L 481 (606)
+.|++|+.++..+.|...... ..+.+...++....| ++.....+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~A~~l 203 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLRALQL 203 (328)
T ss_pred eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHHHHHH
Confidence 899999999988888765421 123334455666655 44444333
No 201
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.03 E-value=1.6e-09 Score=119.28 Aligned_cols=210 Identities=19% Similarity=0.307 Sum_probs=129.1
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV 343 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~ 343 (606)
.+.+++|.......+.+.+..+... ...+|++|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALS----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCC----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 4567888888777766655543322 2468999999999999999997654 57999999987644321
Q ss_pred -----hhhh-------HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCC----C
Q 007367 344 -----GVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSG----N 405 (606)
Q Consensus 344 -----G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~----~ 405 (606)
|... ......|..+. ..+|||||||.+. ...+..+..++..-. .... .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECC---CCEEEEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 1100 00112333333 2499999999993 233333333333211 1111 1
Q ss_pred CcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHh----cC--CCC--CCcccHHHH
Q 007367 406 SGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHS----RG--KAL--AKDVDFEKI 466 (606)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l----~~--~~l--~~dvdl~~L 466 (606)
.++.+|++||..- ..+.+.|+|.. .+.+..|...+|.+ +++.++ .. ... ..+..+..|
T Consensus 277 ~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 353 (457)
T PRK11361 277 VDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLL 353 (457)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3478999998643 23444455544 56788899988865 222222 21 111 122335667
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 467 SRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 467 a~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
....+-.+.++|++++++++..+ ....|+.+|+...+
T Consensus 354 ~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 354 TAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 77777779999999999987654 34578888876544
No 202
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.00 E-value=7.3e-10 Score=107.31 Aligned_cols=109 Identities=33% Similarity=0.421 Sum_probs=74.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC----CeeeechhhHHHHHhhhhhHHHHHHHH------HHHcCCCeEEEEccccc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGV----PFFSCAASEFVELFVGVGASRVRDLFE------KAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~----pfi~vs~se~~~~~~G~~~~~vr~lF~------~A~~~aP~ILfIDEID~ 372 (606)
..+||+||+|||||.+|+++|..+.. +++.++++++.+. +.....+..++. ..... .||||||||.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHHhh
Confidence 46899999999999999999999996 9999999998761 111111111111 11112 2999999999
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHHhccCC---------CCCcEEEEEeeCCCC
Q 007367 373 VGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GNSGVIVLAATNRPD 418 (606)
Q Consensus 373 L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~---------~~~~ViVIaaTN~p~ 418 (606)
..+. ...+.+.....+.+.||+.||+-. .-.++++|+|+|--.
T Consensus 80 a~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPS---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9775 122334455677888888876531 124689999999765
No 203
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.97 E-value=2.2e-09 Score=118.82 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=130.1
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV 343 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~ 343 (606)
.+.+++|.....+++.+.+..+... ...+||+|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4668999998887777766543322 3469999999999999999998865 57999999987643221
Q ss_pred -----hhhh------HH-HHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCC----C
Q 007367 344 -----GVGA------SR-VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSG----N 405 (606)
Q Consensus 344 -----G~~~------~~-vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~----~ 405 (606)
|... .. ....|+.+. ...|||||||.+. ...+..+.+++..-. .... .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a~---~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQAD---GGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeECC---CCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 1100 00 011233333 3489999999983 333444444443311 0111 2
Q ss_pred CcEEEEEeeCCCC-------CccccccCCCccccccccCCCCHHHHHH----HHHHHhc----CCC--C--CCcccHHHH
Q 007367 406 SGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHSR----GKA--L--AKDVDFEKI 466 (606)
Q Consensus 406 ~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l~----~~~--l--~~dvdl~~L 466 (606)
.++.+|++|+..- .+.+.|.. ||. .+.+..|...+|.+ +++++++ ..+ . ..+..+..|
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 348 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAAL 348 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3478899888642 23333333 331 46677788877764 3333332 211 1 123346777
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 467 SRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 467 a~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
....+-.+.++|++++++++..+ ....|+.+|+...+
T Consensus 349 ~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 349 TRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 78888889999999999998765 34578888876444
No 204
>PRK15115 response regulator GlrR; Provisional
Probab=98.94 E-value=4.4e-09 Score=115.59 Aligned_cols=207 Identities=22% Similarity=0.320 Sum_probs=124.7
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhh-
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV- 345 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~- 345 (606)
+++|.......+.+.+..+... ...++|+|++|||||++|+++.... +.||+.++|..+.+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS----------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC----------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 4677766655554444433221 2358999999999999999997764 5799999998764432211
Q ss_pred ----hh-------HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCC----CCcE
Q 007367 346 ----GA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSG----NSGV 408 (606)
Q Consensus 346 ----~~-------~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~----~~~V 408 (606)
.. .....+|+.+. ..+|||||||.|. ...+..+..++..-. .... ..++
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAAE---GGTLFLDEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEECC---CCEEEEEccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 00 00111233333 3499999999993 333344444443211 1111 1257
Q ss_pred EEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHhcC----CC--C--CCcccHHHHHHh
Q 007367 409 IVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRG----KA--L--AKDVDFEKISRR 469 (606)
Q Consensus 409 iVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l~~----~~--l--~~dvdl~~La~~ 469 (606)
.+|++|+.. ++.. ...|+|.. .+.+..|...+|.+ +++.+++. .. . ..+.-+..|...
T Consensus 271 rii~~~~~~--l~~~-~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (444)
T PRK15115 271 RIISATHRD--LPKA-MARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 (444)
T ss_pred EEEEeCCCC--HHHH-HHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 899998864 3333 33356632 55677899998864 22333321 11 1 123346777777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 470 TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 470 t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.+..+.++|++++++++..+ ....|+.+++...+
T Consensus 348 ~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 348 SWPGNVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred CCCChHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 77789999999999987654 34578888876544
No 205
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.93 E-value=7.2e-09 Score=111.44 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=128.5
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeeee----
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSC---- 333 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-------g~pfi~v---- 333 (606)
.+.|.-++|+|..|..|--. .-+|. -.|+||.|+.|||||+++|+|+.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 57788999999998776321 22222 2489999999999999999999865 3333110
Q ss_pred --chhhHHHH-------------------HhhhhhHHHH------------------HHHHHHHcCCCeEEEEccccchh
Q 007367 334 --AASEFVEL-------------------FVGVGASRVR------------------DLFEKAKSKAPCIVFIDEIDAVG 374 (606)
Q Consensus 334 --s~se~~~~-------------------~~G~~~~~vr------------------~lF~~A~~~aP~ILfIDEID~L~ 374 (606)
.|.+.... -.+.++.++- .++.+|.. .||+|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR---GIlYvDEvnlL~ 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR---GILYVDEVNLLD 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC---CEEEEecccccc
Confidence 11111111 1122222211 12222333 399999998883
Q ss_pred hccCCCCCCCChhHHHHHHHHHHHhcc---------C--CCCCcEEEEEeeCCCC-CccccccCCCccccccccCCC-CH
Q 007367 375 RQRGAGLGGGNDEREQTINQLLTEMDG---------F--SGNSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRP-DV 441 (606)
Q Consensus 375 ~~r~~~~~~~~~e~~~~Ln~LL~eld~---------~--~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~P-d~ 441 (606)
++.++.||..+.. + ....++++|+|.|.-+ .|-+.|+. ||...|.+..| +.
T Consensus 158 --------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~ 221 (423)
T COG1239 158 --------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDL 221 (423)
T ss_pred --------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCH
Confidence 3466666665432 2 2234689999999754 68889998 99999988887 67
Q ss_pred HHHHHHHHHHhcCCCCCCccc-------------------------------HHHHHHhCC--CCC-HHHHHHHHHHHHH
Q 007367 442 AGRVKILQVHSRGKALAKDVD-------------------------------FEKISRRTP--GFT-GADLQNLMNEAAI 487 (606)
Q Consensus 442 ~eR~~IL~~~l~~~~l~~dvd-------------------------------l~~La~~t~--G~S-gaDL~~Lv~eA~~ 487 (606)
++|.+|+++.+.-.. .++.- ...++..+. +.. .+.-..+++.+..
T Consensus 222 ~~rv~Ii~r~~~f~~-~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a 300 (423)
T COG1239 222 EERVEIIRRRLAFEA-VPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKA 300 (423)
T ss_pred HHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 889888886543211 11100 111111110 011 1112235556667
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH
Q 007367 488 LAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 488 ~A~rr~~~~It~edl~~Al~ri~ 510 (606)
.|+.+++..++.+|++++..-.+
T Consensus 301 ~aa~~Gr~~v~~~Di~~a~~l~l 323 (423)
T COG1239 301 LAALRGRTEVEEEDIREAAELAL 323 (423)
T ss_pred HHHhcCceeeehhhHHHHHhhhh
Confidence 77778888888888888876543
No 206
>PRK08116 hypothetical protein; Validated
Probab=98.93 E-value=3.5e-09 Score=109.59 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=75.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhh----hhHHHHHHHHHHHcCCCeEEEEccccchh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV----GASRVRDLFEKAKSKAPCIVFIDEIDAVG 374 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~----~~~~vr~lF~~A~~~aP~ILfIDEID~L~ 374 (606)
..|++|+|++|||||+||.++++++ +.++++++..++...+... ......++++... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999975 7899999998887654322 1122233444433 23599999996531
Q ss_pred hccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC-CC----ccccccCCCcc---ccccccCCCCH
Q 007367 375 RQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP-DV----LDSALLRPGRF---DRQVTVDRPDV 441 (606)
Q Consensus 375 ~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p-~~----LD~aLlRpgRF---d~~I~v~~Pd~ 441 (606)
..+..+..+..++...- . .+..+|.|||.+ +. ++..+.+ |+ ...|.+.-+|.
T Consensus 192 ---------~t~~~~~~l~~iin~r~---~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRY---R-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHH---H-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 13333444444444322 1 223577777764 33 4555655 43 22455666665
No 207
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.93 E-value=6.2e-09 Score=114.92 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=127.4
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh-
Q 007367 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV- 343 (606)
Q Consensus 268 f~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~- 343 (606)
+.+++|.....+++.+.+..+... ...+++.|++||||+++|+++.... +.||+.++|..+.+.+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 346889888877777666543322 3468999999999999999998764 57999999977643222
Q ss_pred ----hhhh-------HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc--CC----CCC
Q 007367 344 ----GVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG--FS----GNS 406 (606)
Q Consensus 344 ----G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~--~~----~~~ 406 (606)
|... ......|+.+ ...+|||||||.+. ...+..+..++..-.. .. ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQA---DGGTLFLDEIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEEC---CCCeEEEEchhhCC-----------HHHHHHHHHHHhcCcEEECCCCceeee
Confidence 1100 0001122222 24589999999983 3334444444443111 11 122
Q ss_pred cEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHh----cCCC----CCCcccHHHHH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHS----RGKA----LAKDVDFEKIS 467 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l----~~~~----l~~dvdl~~La 467 (606)
++.+|++|+..- ..+...|+|.. .+.+..|...+|.+ +++.++ ...+ ...+..+..|.
T Consensus 269 ~~rii~~~~~~l---~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (463)
T TIGR01818 269 DVRIVAATHQNL---EALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLK 345 (463)
T ss_pred eeEEEEeCCCCH---HHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 578888888653 23333344431 45677777776654 333333 2211 11233466677
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 468 RRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 468 ~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
...+-.+.++|++++++++..+ ....|+.+|+...+
T Consensus 346 ~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 346 QLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 7776678999999999998765 34578888887555
No 208
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.86 E-value=4.5e-08 Score=101.86 Aligned_cols=219 Identities=20% Similarity=0.213 Sum_probs=134.8
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se 337 (606)
-++.+..+-++.|++++++....+.+..+.-+. | +.|+|||||||||....+.|..+..|.-+- +-
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~l-----------P-h~L~YgPPGtGktsti~a~a~~ly~~~~~~--~m 95 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGL-----------P-HLLFYGPPGTGKTSTILANARDFYSPHPTT--SM 95 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccCCCC-----------C-cccccCCCCCCCCCchhhhhhhhcCCCCch--hH
Confidence 355567788999999999997777766443322 2 689999999999999999999887652111 11
Q ss_pred HHHHH--hhhhhHHHH---HHHHHHHc-------CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCC
Q 007367 338 FVELF--VGVGASRVR---DLFEKAKS-------KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN 405 (606)
Q Consensus 338 ~~~~~--~G~~~~~vr---~lF~~A~~-------~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~ 405 (606)
+.+.. ...+..-+| ..|...+. ..+..+++||.|++.. ...|+|-..++.+..+
T Consensus 96 ~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~--------------~AQnALRRviek~t~n 161 (360)
T KOG0990|consen 96 LLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR--------------DAQNALRRVIEKYTAN 161 (360)
T ss_pred HHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH--------------HHHHHHHHHHHHhccc
Confidence 11111 111212222 34555553 2567999999999843 3556666777766655
Q ss_pred CcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHhCCCCCHHHHHHHHHH
Q 007367 406 SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQNLMNE 484 (606)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~t~G~SgaDL~~Lv~e 484 (606)
. .++..+|.+..+.+++++ ||. .+.+.+.+...-...+.++.+........+ ...++. .+..|++..++.
T Consensus 162 ~--rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r----~s~gDmr~a~n~ 232 (360)
T KOG0990|consen 162 T--RFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR----LSVGDMRVALNY 232 (360)
T ss_pred e--EEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH----HhHHHHHHHHHH
Confidence 4 455667999999999998 663 455666676777777777765544332222 222333 244566666665
Q ss_pred HHHHHHHhC---------------CCCCCHHHHHHHHHHHHcCC
Q 007367 485 AAILAARRD---------------LKEISKDEISDALERIIAGP 513 (606)
Q Consensus 485 A~~~A~rr~---------------~~~It~edl~~Al~ri~~g~ 513 (606)
.-..+..-. .......|+++.++.++.+.
T Consensus 233 Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~ 276 (360)
T KOG0990|consen 233 LQSILKKVMERKELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGE 276 (360)
T ss_pred HHHHHHHhCCCCCCCCchhhHHHhcCCCChhHHHHHHHHHhcCc
Confidence 444433221 11233447777777666554
No 209
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.86 E-value=3.1e-08 Score=115.79 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=90.1
Q ss_pred ccccchHHHHHHHHHHHHhcCchhh-----------hhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-------CCee
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKY-----------TALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-------VPFF 331 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~-----------~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g-------~pfi 331 (606)
.|.|++.+|+.+. +..+....+. .....+-..+|||+|+||||||.+|+++++-.. .++.
T Consensus 451 ~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 4889999987662 3333222111 011234445899999999999999999988542 3555
Q ss_pred eechhhHHHHHh-hhhhHHH-HHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC------
Q 007367 332 SCAASEFVELFV-GVGASRV-RDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS------ 403 (606)
Q Consensus 332 ~vs~se~~~~~~-G~~~~~v-r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~------ 403 (606)
.+.+..+..... ..+...+ ...+..|.. .+++|||+|.+. .. ....|++.|+...
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlAdg---GtL~IDEidkms-----------~~---~Q~aLlEaMEqqtIsI~Ka 591 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLANG---GVCCIDELDKCH-----------NE---SRLSLYEVMEQQTVTIAKA 591 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEcCC---CeEEecchhhCC-----------HH---HHHHHHHHHhCCEEEEecC
Confidence 554443321000 0011000 012222333 399999999983 22 3344555554321
Q ss_pred -----CCCcEEEEEeeCCCC-------------CccccccCCCcccccc-ccCCCCHHHHHH
Q 007367 404 -----GNSGVIVLAATNRPD-------------VLDSALLRPGRFDRQV-TVDRPDVAGRVK 446 (606)
Q Consensus 404 -----~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~~I-~v~~Pd~~eR~~ 446 (606)
-+.++.||||+|... .|++.|++ |||..+ .++.|+.+.=..
T Consensus 592 Gi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~ 651 (915)
T PTZ00111 592 GIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQL 651 (915)
T ss_pred CcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHH
Confidence 134689999999742 37899999 999864 556666544333
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.85 E-value=2.5e-08 Score=95.60 Aligned_cols=135 Identities=20% Similarity=0.294 Sum_probs=86.9
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee----echhhHHHH-------
Q 007367 273 GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS----CAASEFVEL------- 341 (606)
Q Consensus 273 G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~----vs~se~~~~------- 341 (606)
|++++++.|.+.+..- +.|..+||+||+|+||+++|+++|+.+-..-.. -.|......
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 6778877777666532 456779999999999999999999977332111 111111100
Q ss_pred --H---h----hhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcE
Q 007367 342 --F---V----GVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGV 408 (606)
Q Consensus 342 --~---~----G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~V 408 (606)
+ . .-....++++.+.+.. ....|++|||+|.+. ....|.||..|+. ...++
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEe--pp~~~ 133 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEE--PPENT 133 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--TTTTE
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcC--CCCCE
Confidence 0 0 1134566666666543 235699999999993 3578899999994 44578
Q ss_pred EEEEeeCCCCCccccccCCCccccccccC
Q 007367 409 IVLAATNRPDVLDSALLRPGRFDRQVTVD 437 (606)
Q Consensus 409 iVIaaTN~p~~LD~aLlRpgRFd~~I~v~ 437 (606)
++|.+|+.++.|.+.+++ |. ..+.|+
T Consensus 134 ~fiL~t~~~~~il~TI~S--Rc-~~i~~~ 159 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRS--RC-QVIRFR 159 (162)
T ss_dssp EEEEEES-GGGS-HHHHT--TS-EEEEE-
T ss_pred EEEEEECChHHChHHHHh--hc-eEEecC
Confidence 999999999999999999 54 344443
No 211
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.85 E-value=4.1e-09 Score=97.93 Aligned_cols=107 Identities=28% Similarity=0.483 Sum_probs=70.2
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeeeechhhHHHHHhhhhhH
Q 007367 272 AGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFVELFVGVGAS 348 (606)
Q Consensus 272 ~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~se~~~~~~G~~~~ 348 (606)
+|...+.+++++-+..+... ...|||+|++||||+++|++|....+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46777878888777765432 34699999999999999999988764 478888887643
Q ss_pred HHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 349 RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 349 ~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
.++++.+ ....|||+|||.+ +.+.+..+.+++...+ ..++.+|+++..+
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQD 110 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-
T ss_pred --HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCC
Confidence 3455555 3459999999999 3344444444444422 3445666666643
No 212
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.84 E-value=2.5e-08 Score=106.57 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=55.6
Q ss_pred ccc-ccccchHHHHHHHHHHHHhcCchhhhhcCCC-CCceEEEEcCCCChHHHHHHHHHHhcCC-------Ceeeech--
Q 007367 267 TFA-DVAGADQAKLELQEVVDFLKNPDKYTALGAK-IPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFSCAA-- 335 (606)
Q Consensus 267 tf~-DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~-~p~gVLL~GPPGTGKT~LArAIA~e~g~-------pfi~vs~-- 335 (606)
-|+ |+.|+++++.++. ++++... .|.. ..+.++|+||||+|||++|++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv---~~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFV---NYFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHH---HHHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 356 8999999966555 4443332 1222 2467899999999999999999999876 8888877
Q ss_pred --hhHHHHHhhhhhHHHHHHH
Q 007367 336 --SEFVELFVGVGASRVRDLF 354 (606)
Q Consensus 336 --se~~~~~~G~~~~~vr~lF 354 (606)
+.+.+..++.....+|..|
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCCCCccCCcccCCHHHHHHH
Confidence 5555544444444444444
No 213
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.84 E-value=6.3e-08 Score=109.11 Aligned_cols=194 Identities=17% Similarity=0.271 Sum_probs=131.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----------CCCeeeechhhHHHH---H-------hhh------hhHHHHHHHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAASEFVEL---F-------VGV------GASRVRDLFEKA 357 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs~se~~~~---~-------~G~------~~~~vr~lF~~A 357 (606)
++++.|-||||||.+++.+-.++ ..+|+++++-.+.+. | .|. +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 78999999999999999997754 357888887654331 1 121 112233333311
Q ss_pred -HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc----ccccCCCcccc
Q 007367 358 -KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD----SALLRPGRFDR 432 (606)
Q Consensus 358 -~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD----~aLlRpgRFd~ 432 (606)
....++||+|||+|.|..+. +.++..|+.+-- ..+.+++||+..|..+... ...-+ |.+.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~ 568 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGL 568 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccc
Confidence 23457999999999997543 456666666643 3467788998888766322 22223 4443
Q ss_pred -ccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHhCC-------CCCCHHHH
Q 007367 433 -QVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGF--TGADLQNLMNEAAILAARRDL-------KEISKDEI 502 (606)
Q Consensus 433 -~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~--SgaDL~~Lv~eA~~~A~rr~~-------~~It~edl 502 (606)
.|.|.+++..+..+|+...++.......-..+-+++..... +.+....+|++|...|..+.. ..|+..|+
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v 648 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHV 648 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHH
Confidence 78999999999999999988776333222233344444333 446677899999999988765 56899999
Q ss_pred HHHHHHHHcC
Q 007367 503 SDALERIIAG 512 (606)
Q Consensus 503 ~~Al~ri~~g 512 (606)
.+|+..+...
T Consensus 649 ~~Ai~em~~~ 658 (767)
T KOG1514|consen 649 MEAINEMLAS 658 (767)
T ss_pred HHHHHHHhhh
Confidence 9999987654
No 214
>PRK12377 putative replication protein; Provisional
Probab=98.84 E-value=3e-08 Score=101.56 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhhhh--HHHHHHHHHHHcCCCeEEEEccccchhhcc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGA--SRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~~~--~~vr~lF~~A~~~aP~ILfIDEID~L~~~r 377 (606)
.+++|+||||||||+||.+|++++ +..+++++..++.......-. ....++++.. ....+|+|||++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~--- 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR--- 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC---
Confidence 589999999999999999999977 678888888888775432211 1122344444 345699999997652
Q ss_pred CCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 378 GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 378 ~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
.++..+..+.+++..-.. ...-+|.|||..
T Consensus 177 ------~s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 177 ------ETKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred ------CCHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 234455666666665432 122467778865
No 215
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.83 E-value=1.9e-08 Score=115.22 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=63.4
Q ss_pred cEEEEEeeCCC--CCccccccCCCccc---cccccCC--C-CHHHHHHHHHHHhcCCC---CCCccc---HHHHHH---h
Q 007367 407 GVIVLAATNRP--DVLDSALLRPGRFD---RQVTVDR--P-DVAGRVKILQVHSRGKA---LAKDVD---FEKISR---R 469 (606)
Q Consensus 407 ~ViVIaaTN~p--~~LD~aLlRpgRFd---~~I~v~~--P-d~~eR~~IL~~~l~~~~---l~~dvd---l~~La~---~ 469 (606)
++.||+++|+. ..+|+.|.. ||. ..+.++. + +.+.+..+++...+... ....++ +..|.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57899999985 457889888 775 3344432 2 24455556654432211 111222 233332 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007367 470 TPG------FTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (606)
Q Consensus 470 t~G------~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~r 508 (606)
..| ...++|.+++++|...|..++.+.++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 222 347899999999999999999999999999988754
No 216
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.82 E-value=1.6e-08 Score=110.86 Aligned_cols=204 Identities=22% Similarity=0.279 Sum_probs=124.5
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhh-
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV- 345 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~- 345 (606)
.++|.......+.+-+..+.. ....++++|.+||||+++|+++.... +.||+.++|..+.+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 467777776666554444332 23468999999999999999997654 5799999998664332211
Q ss_pred ----hh-------HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC-----CC----C
Q 007367 346 ----GA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----SG----N 405 (606)
Q Consensus 346 ----~~-------~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~-----~~----~ 405 (606)
.. .....+|..+ ...+|||||||.+.. ..+ ..|+..++.- .. .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ldei~~l~~-----------~~q---~~l~~~l~~~~~~~~~~~~~~~ 272 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP-----------MMQ---VRLLRAIQEREVQRVGSNQTIS 272 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeEC---CCCEEEEeccccCCH-----------HHH---HHHHHHHccCcEEeCCCCceee
Confidence 00 0001122322 345999999999942 223 3444444321 11 1
Q ss_pred CcEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHhcC----CC---C-CCcccHHHH
Q 007367 406 SGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRG----KA---L-AKDVDFEKI 466 (606)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l~~----~~---l-~~dvdl~~L 466 (606)
.++.+|++|+.+- ..+..+|+|.. .+.+..|+..+|.+ +++.++.+ .. . ..+..+..|
T Consensus 273 ~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (441)
T PRK10365 273 VDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLL 349 (441)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 2467888887643 23344556644 57778888888854 33333321 11 1 123345667
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 467 SRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 467 a~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
....+..+.++|++++++++..+ ....|+.+++...+
T Consensus 350 ~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 350 IHYDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred HhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 77776678999999999987653 34568888876543
No 217
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.81 E-value=3.3e-08 Score=103.98 Aligned_cols=199 Identities=22% Similarity=0.281 Sum_probs=128.9
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeechhhHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAASEFVE 340 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~se~~~ 340 (606)
....|+.+++....++.+.+-...+..- ...+||.|..||||-++||+.-.. ...||+.+||..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~Aml----------DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAML----------DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhcc----------CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 3457888999888776665544332221 124799999999999999998654 367999999987654
Q ss_pred H-----Hhhh--hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH--hccCCC----CCc
Q 007367 341 L-----FVGV--GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE--MDGFSG----NSG 407 (606)
Q Consensus 341 ~-----~~G~--~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e--ld~~~~----~~~ 407 (606)
. ..|. +......+|++|..+ .+|+|||..+. ...+..+-.||+. +..... .-+
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmS-----------p~lQaKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMS-----------PRLQAKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcC-----------HHHHHHHHHHhcCCceeecCCcceEEEE
Confidence 3 2333 234556789999877 79999998883 3344444444442 111111 125
Q ss_pred EEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH--------HHHHHhcCCCCC-C---cccHHHHHH
Q 007367 408 VIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK--------ILQVHSRGKALA-K---DVDFEKISR 468 (606)
Q Consensus 408 ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~--------IL~~~l~~~~l~-~---dvdl~~La~ 468 (606)
|.||++|..+- ..+...|+|.. +..+..|...+|.+ ++..+..+.+.. + ..-+..+.+
T Consensus 335 VRVIcatq~nL---~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 335 VRVICATQVNL---VELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred EEEEecccccH---HHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 89999998764 23333444433 67788899888854 222333333322 1 122466666
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 007367 469 RTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 469 ~t~G~SgaDL~~Lv~eA~~~A 489 (606)
.-+-.+.++|.|++-+|+...
T Consensus 412 y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 412 YAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred cCCCccHHHHHHHHHHHHHHh
Confidence 666679999999999998665
No 218
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.5e-08 Score=108.58 Aligned_cols=99 Identities=31% Similarity=0.533 Sum_probs=69.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH-HHhhhh-hHHHHHHHHHHHc----CCCeEEEEccccchhhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVGVG-ASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQ 376 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~-~~~G~~-~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~ 376 (606)
.+|||.||+|+|||+||+.+|+-+++||..++|..+.. .|+|+. +.-+..++..|.. ....|+||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 37999999999999999999999999999999998865 578764 3445555555431 22359999999999854
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcc
Q 007367 377 RGAGLGGGNDEREQTINQLLTEMDG 401 (606)
Q Consensus 377 r~~~~~~~~~e~~~~Ln~LL~eld~ 401 (606)
-..-....+-..+-+...||..+++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 3221111122234455667777665
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.78 E-value=5.9e-08 Score=99.23 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=83.5
Q ss_pred Cccccccc-cchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 265 GVTFADVA-GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 265 ~~tf~DI~-G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
..+|++.. +.++.+..+..+..+.++... ...+++|+|+||||||+|+.+++.++ +..+++++..++..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~~-------~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFDG-------NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhcc-------CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 45777765 333444445555555433211 12489999999999999999999987 78899999998887
Q ss_pred HHhhhh---hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 341 LFVGVG---ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 341 ~~~G~~---~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
.+.... ......+++... ..++|+|||++... ..+.....+.+++..-- .....+|.+||..
T Consensus 141 ~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 141 AMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT---------ESRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 544321 112334555443 45799999998762 23444556777776532 1223577788864
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=2e-08 Score=107.28 Aligned_cols=134 Identities=22% Similarity=0.292 Sum_probs=97.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCee---eechhh------HHH-----------HH----------------
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF---SCAASE------FVE-----------LF---------------- 342 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi---~vs~se------~~~-----------~~---------------- 342 (606)
.+.|.++||+||+|+||+++|+++|+.+.+..- .-.|.. +.. ..
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 377899999999999999999999997754220 001110 000 00
Q ss_pred ------------hhhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCC
Q 007367 343 ------------VGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (606)
Q Consensus 343 ------------~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~ 406 (606)
..-+...+|++.+.+.. +...|++||++|.+. ....|.||+.++ ++..
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLE--EPPP 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhc--CCCc
Confidence 01123566776665542 234599999999993 357899999999 4666
Q ss_pred cEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVH 451 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~ 451 (606)
++++|.+|++++.|.+.+++ |+ ..+.|++|+.++..+.|...
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 78999999999999999999 76 68999999999998888764
No 221
>PRK08181 transposase; Validated
Probab=98.78 E-value=7.6e-08 Score=99.74 Aligned_cols=100 Identities=20% Similarity=0.335 Sum_probs=67.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhh-hhHHHHHHHHHHHcCCCeEEEEccccchhhcc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r 377 (606)
..+++|+||||||||+||.++++++ |..+++++..++...+... ........++... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC--
Confidence 3579999999999999999998754 7888999999888765322 1223334455443 456999999987632
Q ss_pred CCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 378 GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 378 ~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
.+.....+.+++....+ +. -+|.|||.+
T Consensus 182 -------~~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 182 -------DQAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred -------CHHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 23444566666665432 11 367777765
No 222
>PRK06526 transposase; Provisional
Probab=98.74 E-value=6.9e-08 Score=99.31 Aligned_cols=100 Identities=24% Similarity=0.376 Sum_probs=65.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhh-hhHHHHHHHHHHHcCCCeEEEEccccchhhcc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r 377 (606)
+.+++|+||||||||+||.+|+.++ |..++.+++.++.+..... ........+... ..+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC--
Confidence 4579999999999999999998875 7788888888877654321 111223333333 3457999999988732
Q ss_pred CCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 378 GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 378 ~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
+......+.+++..... +. -+|.+||.+
T Consensus 174 -------~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 174 -------EPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred -------CHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 23344556666654332 11 367778865
No 223
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.4e-07 Score=100.29 Aligned_cols=134 Identities=20% Similarity=0.249 Sum_probs=96.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCe--eeech------h--------hHH--HHHhh--hhhHHHHHHHHHHHc
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPF--FSCAA------S--------EFV--ELFVG--VGASRVRDLFEKAKS 359 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf--i~vs~------s--------e~~--~~~~G--~~~~~vr~lF~~A~~ 359 (606)
+.|.++||+||+|+||+++|+++|+.+-+.- -.-.| . ++. ....| -+...+|++.+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 5678899999999999999999999764311 00011 1 110 00001 245567776666543
Q ss_pred ----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccc
Q 007367 360 ----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVT 435 (606)
Q Consensus 360 ----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~ 435 (606)
+...|++||++|.+. ....|.||+.++. +..++++|.+|+.++.|.+.+++ |. ..+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWL 162 (325)
T ss_pred ccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEe
Confidence 334699999999993 3578899999994 55678888899999999999999 65 5788
Q ss_pred cCCCCHHHHHHHHHHHh
Q 007367 436 VDRPDVAGRVKILQVHS 452 (606)
Q Consensus 436 v~~Pd~~eR~~IL~~~l 452 (606)
|++|+.++..+.|....
T Consensus 163 ~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 163 IHPPEEQQALDWLQAQS 179 (325)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999998888887643
No 224
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.73 E-value=1.4e-08 Score=113.51 Aligned_cols=185 Identities=25% Similarity=0.346 Sum_probs=118.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh--cCCCeeeechhhHHH-----HHhhh--------hhHHHHHHHHHHHcCCCeEEEEc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE--AGVPFFSCAASEFVE-----LFVGV--------GASRVRDLFEKAKSKAPCIVFID 368 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e--~g~pfi~vs~se~~~-----~~~G~--------~~~~vr~lF~~A~~~aP~ILfID 368 (606)
.+||+|.+||||-.+||++-.. ...||+.++|..+.+ ++.|. ..+..+..+++|..+ .+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccHHH
Confidence 5899999999999999999654 467999999975543 23332 223344556666655 89999
Q ss_pred cccchhhccCCCCCCCChhHHHHHHHHHHH-----hccCCCCCcEEEEEeeCCCCCccccccCCCcccc-------cccc
Q 007367 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTE-----MDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTV 436 (606)
Q Consensus 369 EID~L~~~r~~~~~~~~~e~~~~Ln~LL~e-----ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v 436 (606)
||..+ .-..+..+-+.|++ +.+-...-+|.||+||+++- ..|.+-|||.+ ...+
T Consensus 415 eIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i 480 (606)
T COG3284 415 EIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVI 480 (606)
T ss_pred Hhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeee
Confidence 99888 33344444445544 12222223589999999877 68888899977 4456
Q ss_pred CCCCHHHHHH---HHHHHh-cCCCCCCccc---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007367 437 DRPDVAGRVK---ILQVHS-RGKALAKDVD---FEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (606)
Q Consensus 437 ~~Pd~~eR~~---IL~~~l-~~~~l~~dvd---l~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~r 508 (606)
.+|...+|.+ .|..++ +.......++ ...|...-+-.+.++|.+++..++.++ +...+...|+...+..
T Consensus 481 ~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~---~~g~~~~~dlp~~l~~ 556 (606)
T COG3284 481 TLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS---DGGRIRVSDLPPELLE 556 (606)
T ss_pred ccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC---CCCeeEcccCCHHHHh
Confidence 6788888754 333333 2221111222 344444444458999999999887665 4445666666555443
No 225
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.71 E-value=8.7e-09 Score=94.91 Aligned_cols=104 Identities=31% Similarity=0.417 Sum_probs=58.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechh-hHH-HHHhhhhhHH---------HHHHHHHHHcCCCeEEEEccccc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS-EFV-ELFVGVGASR---------VRDLFEKAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s-e~~-~~~~G~~~~~---------vr~lF~~A~~~aP~ILfIDEID~ 372 (606)
+|||+|+||+|||++|+++|+..+..|..+.+. ++. +...|...-. -.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999888764 332 2233321000 00112 13999999987
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHHhccC---------CCCCcEEEEEeeCCCC-----CccccccCCCcc
Q 007367 373 VGRQRGAGLGGGNDEREQTINQLLTEMDGF---------SGNSGVIVLAATNRPD-----VLDSALLRPGRF 430 (606)
Q Consensus 373 L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~---------~~~~~ViVIaaTN~p~-----~LD~aLlRpgRF 430 (606)
.-+ ++...||+.|..- .-...++||||-|..+ .|+++++. ||
T Consensus 74 app--------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP--------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H--------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH--------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 632 4556666666532 2234589999999876 58888888 77
No 226
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.71 E-value=2.8e-07 Score=95.08 Aligned_cols=92 Identities=15% Similarity=0.231 Sum_probs=70.2
Q ss_pred CCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 007367 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQNLMNEAAILAARRDLK 495 (606)
Q Consensus 417 p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~ 495 (606)
|.-+|-.|+. |. ..|...+++.++.++||+..+....+.-+.| ++.|......-|.+--.+|+..|.+.+.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 3456777776 54 4678888999999999999887655543333 455555555567788889999999999999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 007367 496 EISKDEISDALERIIA 511 (606)
Q Consensus 496 ~It~edl~~Al~ri~~ 511 (606)
.+..+|+..+.+-.+.
T Consensus 416 ~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLD 431 (454)
T ss_pred eeehhHHHHHHHHHhh
Confidence 9999999999876553
No 227
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=3.3e-07 Score=97.16 Aligned_cols=149 Identities=20% Similarity=0.331 Sum_probs=100.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCe-e---eechhhHHH------H-Hh-------h------hhhHHHHHHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-F---SCAASEFVE------L-FV-------G------VGASRVRDLFE 355 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf-i---~vs~se~~~------~-~~-------G------~~~~~vr~lF~ 355 (606)
+.|.++||+||+|+||+++|.++|..+-+.- . .+.+-.+.. . ++ | .+...+|++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 5678899999999999999999998764311 0 011111110 0 00 1 12456677666
Q ss_pred HHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccc
Q 007367 356 KAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFD 431 (606)
Q Consensus 356 ~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd 431 (606)
.+.. +.-.|++||++|.+. ....|.||+.++. +..++++|.+|+.++.|.+.+++ |+
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC- 164 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC- 164 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-
Confidence 5543 233599999999993 3578899999985 44567888888999999999999 66
Q ss_pred cccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCC
Q 007367 432 RQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPG 472 (606)
Q Consensus 432 ~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G 472 (606)
..+.|+.|+.++..+.|... +.. ..+...++....|
T Consensus 165 q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G 200 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARG 200 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCC
Confidence 57889999998887777642 222 2223455555555
No 228
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.70 E-value=1.3e-07 Score=99.88 Aligned_cols=132 Identities=23% Similarity=0.311 Sum_probs=81.4
Q ss_pred Cccccccccch-HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 265 GVTFADVAGAD-QAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 265 ~~tf~DI~G~d-~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
..+|+++...+ +.+..+..+.+|+.+... ....+|++|+||+|||||+|+.|+|+++ |.++..++..+|..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~-----~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPP-----GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhc-----cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 46788876544 333333334445443211 1235799999999999999999999987 78888888888876
Q ss_pred HHhhh-hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChh-HHHHHHHHHHH-hccCCCCCcEEEEEeeCCC
Q 007367 341 LFVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDE-REQTINQLLTE-MDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 341 ~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e-~~~~Ln~LL~e-ld~~~~~~~ViVIaaTN~p 417 (606)
.+... ....+.+.++..+ ...+|+||||..-.. +++ ...++..++.. +. .+.-+|.|||.+
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~---------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM---------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc---------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 54322 1223344555544 346999999976421 222 22445555543 22 234578888865
No 229
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.70 E-value=2.1e-07 Score=91.64 Aligned_cols=165 Identities=25% Similarity=0.341 Sum_probs=88.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC---Ceeeech-h-hH---HHHH-------------hh----------------
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGV---PFFSCAA-S-EF---VELF-------------VG---------------- 344 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~---pfi~vs~-s-e~---~~~~-------------~G---------------- 344 (606)
...++|+||.|+|||+|++.+.....- ..+++.. . .. ...+ .+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 356899999999999999999998721 2222221 1 00 0000 10
Q ss_pred -hhhHHHHHHHHHHHcCC-CeEEEEccccchh-hccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc-
Q 007367 345 -VGASRVRDLFEKAKSKA-PCIVFIDEIDAVG-RQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL- 420 (606)
Q Consensus 345 -~~~~~vr~lF~~A~~~a-P~ILfIDEID~L~-~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L- 420 (606)
.....+..+++...... ..||+|||+|.+. .. .+....+..|...++......++.+|.+.......
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS---------EEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT---------TTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc---------cchHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 11334556666665533 4899999999996 21 12234555666666654444455444444332211
Q ss_pred -----cccccCCCccccccccCCCCHHHHHHHHHHHhcCC-CC-CCcccHHHHHHhCCCCCHHHHH
Q 007367 421 -----DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK-AL-AKDVDFEKISRRTPGFTGADLQ 479 (606)
Q Consensus 421 -----D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~-~l-~~dvdl~~La~~t~G~SgaDL~ 479 (606)
...+. +|+.. +.+++.+.++..++++..++.. .+ ..+.+++.+...+.| .++.|.
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHHH
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCC-CHHHHh
Confidence 12233 37766 9999999999999999887665 11 256667888888776 555553
No 230
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.7e-07 Score=100.03 Aligned_cols=155 Identities=16% Similarity=0.163 Sum_probs=104.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC--eeeechh------hHHH--------HH-----hhhhhHHHHHHHHHH
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAAS------EFVE--------LF-----VGVGASRVRDLFEKA 357 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p--fi~vs~s------e~~~--------~~-----~G~~~~~vr~lF~~A 357 (606)
.+.|.++||+||+|+||+++|+++|..+-+. --.-.|. .+.. .. ..-+...+|++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 3668899999999999999999999976331 0000111 1100 00 012345667766655
Q ss_pred Hc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccc
Q 007367 358 KS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQ 433 (606)
Q Consensus 358 ~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~ 433 (606)
.. +...|++||++|.+. ....|.||+.++. +..++++|..|+.++.|.+.+++ |.. .
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred hhccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 43 345699999999993 3578999999994 56678999999999999999999 664 6
Q ss_pred cccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHH
Q 007367 434 VTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGAD 477 (606)
Q Consensus 434 I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaD 477 (606)
+.|++|+.++..+.|.... +.. ..+...++....| ++..
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G-~~~~ 200 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAG-APGA 200 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCC-CHHH
Confidence 8999999888877775431 222 2224445555555 4443
No 231
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.65 E-value=1.8e-07 Score=106.49 Aligned_cols=188 Identities=12% Similarity=0.095 Sum_probs=128.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeeeechhhHHHHHhhhh---------hH-HHHHHHHHHHcCCCeEEEEccc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVELFVGVG---------AS-RVRDLFEKAKSKAPCIVFIDEI 370 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g--~pfi~vs~se~~~~~~G~~---------~~-~vr~lF~~A~~~aP~ILfIDEI 370 (606)
.||||.|++||||++++++++.-+. .||+.+..+--.+..+|.. .. .-..++..|..+ ||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~G---vL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGG---VLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCC---EEEecCc
Confidence 5899999999999999999999874 5888766554334444432 11 112344445444 9999999
Q ss_pred cchhhccCCCCCCCChhHHHHHHHHHHHhccC-----------CCCCcEEEEEeeCCC---CCccccccCCCcccccccc
Q 007367 371 DAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----------SGNSGVIVLAATNRP---DVLDSALLRPGRFDRQVTV 436 (606)
Q Consensus 371 D~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~-----------~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd~~I~v 436 (606)
..+- ..+++.|++-|+.- .-...+++|++-|.. ..|+++++. ||+.++.+
T Consensus 103 n~~~--------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERLE--------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccCC--------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 8873 35788888887642 112457888874432 358899999 99999999
Q ss_pred CCCCHHHHH-------HHHHH--HhcCCCCCCcccHHHHHHh--CCCC-CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007367 437 DRPDVAGRV-------KILQV--HSRGKALAKDVDFEKISRR--TPGF-TGADLQNLMNEAAILAARRDLKEISKDEISD 504 (606)
Q Consensus 437 ~~Pd~~eR~-------~IL~~--~l~~~~l~~dvdl~~La~~--t~G~-SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~ 504 (606)
+.|+..+.. +|... .+.+..+ .+..+..++.. ..|. |.+--..+++-|..+|..+++..|+.+|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 988765432 23332 2233332 22223333332 2354 7788889999999999999999999999999
Q ss_pred HHHHHH
Q 007367 505 ALERII 510 (606)
Q Consensus 505 Al~ri~ 510 (606)
|+.-++
T Consensus 246 Aa~lvL 251 (584)
T PRK13406 246 AARLVL 251 (584)
T ss_pred HHHHHH
Confidence 988765
No 232
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=1.1e-06 Score=95.66 Aligned_cols=221 Identities=19% Similarity=0.223 Sum_probs=138.4
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhhHHH----
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEFVE---- 340 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se~~~---- 340 (606)
.+.|.+..+..+++++..- +....+.++.+.|-||||||.+...+-... ....++++|..+.+
T Consensus 151 ~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 4677777777777665531 223457789999999999999988664433 22447888865321
Q ss_pred ------HH----hhhh-hHHHHHHHHH-HHcCC-CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCc
Q 007367 341 ------LF----VGVG-ASRVRDLFEK-AKSKA-PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG 407 (606)
Q Consensus 341 ------~~----~G~~-~~~vr~lF~~-A~~~a-P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ 407 (606)
.+ .+.+ .......|+. ..+.+ +-++++||+|.|+.+.. .++..|.. +..+ .+.+
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lFe-wp~l-p~sr 289 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLFE-WPKL-PNSR 289 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeeeehh-cccC-Ccce
Confidence 11 1111 1122233333 22333 67999999999974331 23333333 3322 3467
Q ss_pred EEEEEeeCCCCCccccccC----CCccccccccCCCCHHHHHHHHHHHhcCCCCCCc--ccHHHHHHhCCCCCH--HHHH
Q 007367 408 VIVLAATNRPDVLDSALLR----PGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD--VDFEKISRRTPGFTG--ADLQ 479 (606)
Q Consensus 408 ViVIaaTN~p~~LD~aLlR----pgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~d--vdl~~La~~t~G~Sg--aDL~ 479 (606)
+++|+..|..+.=|..|-| .+--...+.|++++.++..+||+..+........ ..++-.|+...|.|| +.+-
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence 8999999988765544432 2233458899999999999999998877554433 336778888888776 3445
Q ss_pred HHHHHHHHHHHHhCCC----------------CCCHHHHHHHHHHHHc
Q 007367 480 NLMNEAAILAARRDLK----------------EISKDEISDALERIIA 511 (606)
Q Consensus 480 ~Lv~eA~~~A~rr~~~----------------~It~edl~~Al~ri~~ 511 (606)
.+|+.|..++....+. .|..+++..++..+..
T Consensus 370 dv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 370 DVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 6778787777665432 2456777777766543
No 233
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.58 E-value=7.3e-07 Score=100.25 Aligned_cols=210 Identities=14% Similarity=0.195 Sum_probs=115.8
Q ss_pred cccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee-ch
Q 007367 257 KFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC-AA 335 (606)
Q Consensus 257 ~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v-s~ 335 (606)
..|..+..+.+.+||+-..+-.++++..+..... +....+-+||+||||||||++++.+|+++|..+.+- +.
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 4556667788999999987766666665553111 222344688999999999999999999998766542 11
Q ss_pred hhHH------HHHhhhh------hH---HHHHH-HHHHHc-----------CCCeEEEEccccchhhccCCCCCCCChhH
Q 007367 336 SEFV------ELFVGVG------AS---RVRDL-FEKAKS-----------KAPCIVFIDEIDAVGRQRGAGLGGGNDER 388 (606)
Q Consensus 336 se~~------~~~~G~~------~~---~vr~l-F~~A~~-----------~aP~ILfIDEID~L~~~r~~~~~~~~~e~ 388 (606)
..+. ..+.+.. .. ...++ +..++. ..+.||+|||+-.+... ..
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~----------~~ 149 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR----------DT 149 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch----------hH
Confidence 1110 0111100 01 11111 111111 24679999999876421 12
Q ss_pred HHHHHHHHHHhccCCCCC-cEEEEEe-eC------CC--------CCccccccCCCccccccccCCCCHHHHHHHHHHHh
Q 007367 389 EQTINQLLTEMDGFSGNS-GVIVLAA-TN------RP--------DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (606)
Q Consensus 389 ~~~Ln~LL~eld~~~~~~-~ViVIaa-TN------~p--------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l 452 (606)
...-..|...+.. ... .+++|.+ ++ .. ..+++.++...+. .+|.|.+-...-....|+..+
T Consensus 150 ~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~ 226 (519)
T PF03215_consen 150 SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRIL 226 (519)
T ss_pred HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHH
Confidence 2222222222331 222 5666666 11 11 1345556543333 467787777765555555443
Q ss_pred cCC--------CCCCccc-HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 453 RGK--------ALAKDVD-FEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 453 ~~~--------~l~~dvd-l~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
... ......+ ++.|+..+.| ||+..++.....+.
T Consensus 227 ~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 227 KKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 221 1122222 5677766554 99999998877776
No 234
>PRK09183 transposase/IS protein; Provisional
Probab=98.58 E-value=4e-07 Score=93.90 Aligned_cols=101 Identities=25% Similarity=0.373 Sum_probs=64.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhh-hhHHHHHHHHHHHcCCCeEEEEccccchhhcc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r 377 (606)
..+++|+||||||||+||.+++.++ |..+.++++.++...+... ....+...+... ...+++++|||++.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~-- 178 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF-- 178 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC--
Confidence 4579999999999999999997664 7788888888877543321 122344455543 24567999999987522
Q ss_pred CCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 378 GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 378 ~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
+.+....+.+++..... +. -+|.|||.+
T Consensus 179 -------~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 179 -------SQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred -------ChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 22333345555554332 22 256677865
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.57 E-value=4.8e-07 Score=96.43 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=65.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhhh---hHHHHHHHHHHHcCCCeEEEEccccchhhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVG---ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQ 376 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~~---~~~vr~lF~~A~~~aP~ILfIDEID~L~~~ 376 (606)
.+++|+||+|||||+||.++|+++ |..+++++..++...+.... .......++... ...+|+|||++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 689999999999999999999986 78899999998877543311 111122234333 34699999997752
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 377 r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
.++.....+..++...-. + +--+|.|||.+
T Consensus 260 -------~t~~~~~~Lf~iin~R~~---~-~k~tIiTSNl~ 289 (329)
T PRK06835 260 -------ITEFSKSELFNLINKRLL---R-QKKMIISTNLS 289 (329)
T ss_pred -------CCHHHHHHHHHHHHHHHH---C-CCCEEEECCCC
Confidence 234444555555554321 1 12367777753
No 236
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=4.1e-07 Score=83.39 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=70.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAG 380 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g--~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~ 380 (606)
+.++|+||+|+|||++++.++.+.. ..++++++.+.......... +.+.+.+.....+.+||||||+.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4589999999999999999998876 77888888766543211111 2233333222356799999999871
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc----cccccCCCccccccccCCCCHHH
Q 007367 381 LGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL----DSALLRPGRFDRQVTVDRPDVAG 443 (606)
Q Consensus 381 ~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L----D~aLlRpgRFd~~I~v~~Pd~~e 443 (606)
.....+..+...- .++-+|.|+.....+ ...+ .||.. .+++.+.+..|
T Consensus 75 ------~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 2334444444421 223344443333322 2333 35764 66777777655
No 237
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=4.3e-07 Score=96.29 Aligned_cols=133 Identities=21% Similarity=0.275 Sum_probs=93.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-eech------h--------hHHHHHh---h--hhhHHHHHHHHHHH
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-SCAA------S--------EFVELFV---G--VGASRVRDLFEKAK 358 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi-~vs~------s--------e~~~~~~---G--~~~~~vr~lF~~A~ 358 (606)
.+.|.++||+||.|+||+.+|+++|..+-+.-- .-.| . |+..-.. | -+...+|++.+.+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 356788999999999999999999997632110 0011 1 1100000 1 12345666655553
Q ss_pred c----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCcccccc
Q 007367 359 S----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQV 434 (606)
Q Consensus 359 ~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I 434 (606)
. +...|++||++|.+. ....|.||+.++. +..++++|..|+.++.|.|.+++ |+ ..+
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~ 162 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-QQW 162 (319)
T ss_pred hCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-eeE
Confidence 3 334699999999993 3578899999994 55678899999999999999999 66 478
Q ss_pred ccCCCCHHHHHHHHHH
Q 007367 435 TVDRPDVAGRVKILQV 450 (606)
Q Consensus 435 ~v~~Pd~~eR~~IL~~ 450 (606)
.|+.|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999888887764
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.53 E-value=9.5e-07 Score=90.94 Aligned_cols=70 Identities=29% Similarity=0.479 Sum_probs=51.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhhhhH-HHHH-HHHHHHcCCCeEEEEccccch
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGAS-RVRD-LFEKAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~~~~-~vr~-lF~~A~~~aP~ILfIDEID~L 373 (606)
..+++|+||||||||+||-||++++ |++++.+...+++......-.. .... +....+ ...+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 5689999999999999999999876 7899999999988754432211 2222 222232 3359999999775
No 239
>PRK06921 hypothetical protein; Provisional
Probab=98.53 E-value=9.3e-07 Score=91.57 Aligned_cols=68 Identities=28% Similarity=0.354 Sum_probs=47.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~ 372 (606)
..+++|+|++|+|||+|+.+||+++ +..+++++..++....... .......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4689999999999999999999975 6788888887766543221 11222233333 2346999999954
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.52 E-value=2.5e-07 Score=90.27 Aligned_cols=100 Identities=23% Similarity=0.352 Sum_probs=62.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhh-hhHHHHHHHHHHHcCCCeEEEEccccchhhcc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r 377 (606)
..+++|+||+|||||+||.++++++ |.++.+++..++.+..... ......++++.... ..+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~--- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP--- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee---
Confidence 4689999999999999999998865 8899999999988765432 12233445555543 3599999996541
Q ss_pred CCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 378 GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 378 ~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
..+.....+.+++....+ +. -+|.|||..
T Consensus 122 ------~~~~~~~~l~~ii~~R~~---~~--~tIiTSN~~ 150 (178)
T PF01695_consen 122 ------LSEWEAELLFEIIDERYE---RK--PTIITSNLS 150 (178)
T ss_dssp --------HHHHHCTHHHHHHHHH---T---EEEEEESS-
T ss_pred ------ecccccccchhhhhHhhc---cc--CeEeeCCCc
Confidence 123334445555554332 22 356688864
No 241
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=4.5e-07 Score=96.48 Aligned_cols=131 Identities=21% Similarity=0.307 Sum_probs=91.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------------------eeeechhhHHHHHhh-----hhhHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------------------------FFSCAASEFVELFVG-----VGASR 349 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~p-------------------------fi~vs~se~~~~~~G-----~~~~~ 349 (606)
+.|.++||+||+|+|||++|+.+|+.+.+. |++++...- +.-.| -+...
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 778899999999999999999999976431 111211000 00001 13456
Q ss_pred HHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcccccc
Q 007367 350 VRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALL 425 (606)
Q Consensus 350 vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLl 425 (606)
+|++.+.+.. ....|++||++|.+.. ...+.|++.++... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL--------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH--------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 7887777654 3345999999999832 45666777777553 34667778888999999998
Q ss_pred CCCccccccccCCCCHHHHHHHHHH
Q 007367 426 RPGRFDRQVTVDRPDVAGRVKILQV 450 (606)
Q Consensus 426 RpgRFd~~I~v~~Pd~~eR~~IL~~ 450 (606)
+ |+ .++.|++|+.++..+.|..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 55 6788999999888877764
No 242
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1e-06 Score=103.30 Aligned_cols=131 Identities=27% Similarity=0.337 Sum_probs=92.4
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH--Hhh
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--FVG 344 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~--~~G 344 (606)
.|+||+++...+.+.|..-+..-. +. .++..+||.||.|+|||-||+++|... .-.|+.+++++|.+. ..|
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~-~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLK-DP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccC-CC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 489999998888887776432111 00 345678999999999999999999977 457899999987761 111
Q ss_pred h-----hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC---------CCcEEE
Q 007367 345 V-----GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG---------NSGVIV 410 (606)
Q Consensus 345 ~-----~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~---------~~~ViV 410 (606)
. +......+.+..+....+||+|||||.-. ..+++.|++.+|...- -.++||
T Consensus 639 sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh--------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH--------------PDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred CCcccccchhHHHHHHHHhcCCceEEEEechhhcC--------------HHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 1 22234466777777777999999999862 2466767777765421 235899
Q ss_pred EEeeCCCC
Q 007367 411 LAATNRPD 418 (606)
Q Consensus 411 IaaTN~p~ 418 (606)
|.|+|.-.
T Consensus 705 IMTsn~~~ 712 (898)
T KOG1051|consen 705 IMTSNVGS 712 (898)
T ss_pred EEecccch
Confidence 99998643
No 243
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=1.3e-06 Score=79.22 Aligned_cols=86 Identities=19% Similarity=0.304 Sum_probs=53.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--------CCCeeeechhhHH------HHHh---hh------hhHH-HHHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA--------GVPFFSCAASEFV------ELFV---GV------GASR-VRDLFEKA 357 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~--------g~pfi~vs~se~~------~~~~---G~------~~~~-vr~lF~~A 357 (606)
.+.++++||+|+|||++++.++.+. ..+++.+++.... .... +. .... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999977 6778887775432 1111 10 1122 23344444
Q ss_pred HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc
Q 007367 358 KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld 400 (606)
......+|+|||+|.+. ....++.|...++
T Consensus 84 ~~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH-------------THHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh
Confidence 44544699999999983 1356666666656
No 244
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.38 E-value=4e-06 Score=86.08 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=120.1
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---C---------
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV---P--------- 329 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~---p--------- 329 (606)
...+.+|+.+.+.++....|+.+...-.-| ++|+|||+|+||-|.+.++-+++.. +
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~~d~P------------Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSSTGDFP------------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcccCCCC------------eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 345567888999999888887666522122 4799999999999999999887621 1
Q ss_pred -----------------eeeechhhHHHHHhhhh-hHHHHHHHHHHHcCC---------CeEEEEccccchhhccCCCCC
Q 007367 330 -----------------FFSCAASEFVELFVGVG-ASRVRDLFEKAKSKA---------PCIVFIDEIDAVGRQRGAGLG 382 (606)
Q Consensus 330 -----------------fi~vs~se~~~~~~G~~-~~~vr~lF~~A~~~a---------P~ILfIDEID~L~~~r~~~~~ 382 (606)
.++++.++ .|.. .--+.+++++..+.. -.+++|.|.|.+..
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------- 141 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------- 141 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-------
Confidence 11222222 1211 122445555554432 25999999999943
Q ss_pred CCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-
Q 007367 383 GGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV- 461 (606)
Q Consensus 383 ~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv- 461 (606)
.....|-..|+.+.. ++.+|..+|....+-+++++ |. ..|.++.|+.++...++...+++.++.-..
T Consensus 142 -------dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 142 -------DAQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred -------HHHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 234456677776655 46778888998989899998 44 468999999999999999998877765443
Q ss_pred cHHHHHHhCCC
Q 007367 462 DFEKISRRTPG 472 (606)
Q Consensus 462 dl~~La~~t~G 472 (606)
-+.++++...|
T Consensus 210 ~l~rIa~kS~~ 220 (351)
T KOG2035|consen 210 LLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHhcc
Confidence 35677777665
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.33 E-value=2.8e-06 Score=78.72 Aligned_cols=110 Identities=23% Similarity=0.273 Sum_probs=63.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh----------------------hh--hhHHHHHHHHHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV----------------------GV--GASRVRDLFEKA 357 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~----------------------G~--~~~~vr~lF~~A 357 (606)
++|+||||+|||+++..++... +.++++++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56676666543222110 00 001112234555
Q ss_pred HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 358 KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
....|.+|+|||+..+.........+........+..|+..+. ..++.+|.+++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6678899999999998654211001112223344444444443 23556666666554
No 246
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.25 E-value=7.5e-06 Score=88.42 Aligned_cols=103 Identities=21% Similarity=0.324 Sum_probs=63.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-CeeeechhhHHHHHhhh------hhHHHHHHHHHHHcCCCeEEEEcccc
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGV-PFFSCAASEFVELFVGV------GASRVRDLFEKAKSKAPCIVFIDEID 371 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~-pfi~vs~se~~~~~~G~------~~~~vr~lF~~A~~~aP~ILfIDEID 371 (606)
...|+|++|||++|+|||+|.-.+...+.+ .-..+.-.+|....... ...-+..+-+...+. -.+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeee
Confidence 457999999999999999999999887644 11222222333211110 112233333333333 2499999997
Q ss_pred chhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 372 AVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 372 ~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
.- +-.....+..|+..+= ..++++|+|+|++
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 64 1223456677777764 3578999999974
No 247
>PF05729 NACHT: NACHT domain
Probab=98.23 E-value=1.1e-05 Score=75.49 Aligned_cols=140 Identities=17% Similarity=0.263 Sum_probs=73.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--------CC-eeeechhhHHH---------HH---hhhhhHHHHH-HHHHHHcCC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAG--------VP-FFSCAASEFVE---------LF---VGVGASRVRD-LFEKAKSKA 361 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g--------~p-fi~vs~se~~~---------~~---~G~~~~~vr~-lF~~A~~~a 361 (606)
-++|+|+||+|||++++.++..+. .+ ++.+++.++.. .. .......+.. +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 479999999999999999987541 11 22333332221 11 1111111222 222334566
Q ss_pred CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC--CccccccCCCccccccccCCC
Q 007367 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVDRP 439 (606)
Q Consensus 362 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~~P 439 (606)
..+|+||.+|.+....+. .........|...+.. ....++-+|.+++... .+...+.. ...+.+..-
T Consensus 82 ~~llilDglDE~~~~~~~------~~~~~~~~~l~~l~~~-~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS------QERQRLLDLLSQLLPQ-ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh------hHHHHHHHHHHHHhhh-ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 789999999999643211 1122222222233332 1122334444443222 12222222 146788888
Q ss_pred CHHHHHHHHHHHhcC
Q 007367 440 DVAGRVKILQVHSRG 454 (606)
Q Consensus 440 d~~eR~~IL~~~l~~ 454 (606)
+.+++.++++.++++
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988754
No 248
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.23 E-value=2.6e-05 Score=86.41 Aligned_cols=210 Identities=14% Similarity=0.206 Sum_probs=105.8
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHHh--cCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeech
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDFL--KNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~L--k~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~ 335 (606)
.+..+..+-+.+|++-...-..++++.+..+ ..+ ++| .+-+||+||+|||||+.++.++.++|+.+++-+.
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~----~l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTP----KLG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhcc----CCC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 3444555678888876655444444433311 011 111 2358999999999999999999999987665431
Q ss_pred -------------hhHHHHHhhhhhHHHHHHHHHHH------------cCCCeEEEEccccchhhccCCCCCCCChhHHH
Q 007367 336 -------------SEFVELFVGVGASRVRDLFEKAK------------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQ 390 (606)
Q Consensus 336 -------------se~~~~~~G~~~~~vr~lF~~A~------------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~ 390 (606)
+.+.......-..........+. ...+.+|+|||+-..... + ...
T Consensus 144 pi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~--------d--~~~ 213 (634)
T KOG1970|consen 144 PINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR--------D--DSE 213 (634)
T ss_pred CccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh--------h--hHH
Confidence 01111001111111111122221 134679999999776432 1 223
Q ss_pred HHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccC------CCccccccccCCCCHHHHHHHHHHHhcCC-------CC
Q 007367 391 TINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLR------PGRFDRQVTVDRPDVAGRVKILQVHSRGK-------AL 457 (606)
Q Consensus 391 ~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlR------pgRFd~~I~v~~Pd~~eR~~IL~~~l~~~-------~l 457 (606)
.+..+|.++-......-|++|.-++.++..++..+. ..|. .+|.|.+-...-.+..|+..+... .+
T Consensus 214 ~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 214 TFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 333334433322222222333323333333332222 1133 256776666666666665544221 11
Q ss_pred CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007367 458 AKDVDFEKISRRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 458 ~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
.....++.++.. +++||+..++...+.+
T Consensus 293 ~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 293 PDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred chhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 223334555554 4459999999887765
No 249
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.22 E-value=5e-05 Score=77.47 Aligned_cols=186 Identities=20% Similarity=0.198 Sum_probs=115.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCeeeech-----hhHHHHHhhh------------hhHHHHHHHHHHHc-CCC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAA-----SEFVELFVGV------------GASRVRDLFEKAKS-KAP 362 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~-----se~~~~~~G~------------~~~~vr~lF~~A~~-~aP 362 (606)
-+.++|+-|+|||++.|++...++ +-.++++. +.+.+.++.+ ....-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 368999999999999997766553 22233332 3333333322 12222334444444 446
Q ss_pred eEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc-c---ccccCCCccccccccCC
Q 007367 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL-D---SALLRPGRFDRQVTVDR 438 (606)
Q Consensus 363 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L-D---~aLlRpgRFd~~I~v~~ 438 (606)
.++++||.+.+.. .....+.-|.+.-++....-.|+.|+-..-...+ - ..+.. |++..|++++
T Consensus 133 v~l~vdEah~L~~-----------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~P 199 (269)
T COG3267 133 VVLMVDEAHDLND-----------SALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELPP 199 (269)
T ss_pred eEEeehhHhhhCh-----------hHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecCC
Confidence 8999999999842 2223343343333333333345555533211111 0 12223 7777788899
Q ss_pred CCHHHHHHHHHHHhcCCCC----CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 007367 439 PDVAGRVKILQVHSRGKAL----AKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (606)
Q Consensus 439 Pd~~eR~~IL~~~l~~~~l----~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~ 503 (606)
.+.++-...++.+++.-.. ..+..+..+...+.| .++-+.++|..|...|...+...|+...+.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999889999988865433 334446777777777 788999999999999988888888877654
No 250
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.21 E-value=2.3e-07 Score=98.99 Aligned_cols=218 Identities=23% Similarity=0.266 Sum_probs=111.5
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhh--cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhh-----HHHHH
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTA--LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE-----FVELF 342 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~--lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se-----~~~~~ 342 (606)
+|.|.+.+|..+. +..+........ ...+-.-++||+|.||||||.|.+.++.-+...+ ++++.. +....
T Consensus 25 ~i~g~~~iK~ail--l~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAIL--LQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHC--CCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHH--HHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 5889888876552 111111111000 0122334899999999999999998876543322 222211 10000
Q ss_pred ---hhhhhHHHH-HHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC----C-------CCc
Q 007367 343 ---VGVGASRVR-DLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----G-------NSG 407 (606)
Q Consensus 343 ---~G~~~~~vr-~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~----~-------~~~ 407 (606)
...+.-.+. ..+-.|.++ |++|||+|.+.. .....|++.|+... . +.+
T Consensus 102 ~~d~~~~~~~leaGalvlad~G---iccIDe~dk~~~--------------~~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADGG---ICCIDEFDKMKE--------------DDRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTTS---EEEECTTTT--C--------------HHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred ccccccceeEEeCCchhcccCc---eeeecccccccc--------------hHHHHHHHHHHcCeeccchhhhcccccch
Confidence 000000000 123344444 999999999832 23556677776531 1 234
Q ss_pred EEEEEeeCCCC-------------CccccccCCCcccccccc-CCCCHHHHHHHHHHHhcCCC----------------C
Q 007367 408 VIVLAATNRPD-------------VLDSALLRPGRFDRQVTV-DRPDVAGRVKILQVHSRGKA----------------L 457 (606)
Q Consensus 408 ViVIaaTN~p~-------------~LD~aLlRpgRFd~~I~v-~~Pd~~eR~~IL~~~l~~~~----------------l 457 (606)
.-|+|++|... .+++.|++ |||..+.+ +.|+.+.-..+.++.++... +
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~ 242 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPI 242 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCcc
Confidence 68999999654 37889999 99988654 66775555444443332210 1
Q ss_pred CCcc-------------------cHHHHHHh-------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 458 AKDV-------------------DFEKISRR-------------TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 458 ~~dv-------------------dl~~La~~-------------t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
..+. ..+.|... ....+.+.|+.+++-|...|..+.++.|+.+|+.+|
T Consensus 243 ~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~A 322 (331)
T PF00493_consen 243 SEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEA 322 (331)
T ss_dssp -HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHH
Confidence 0000 01111111 112466788889999988998888999999999999
Q ss_pred HHHH
Q 007367 506 LERI 509 (606)
Q Consensus 506 l~ri 509 (606)
++-+
T Consensus 323 i~L~ 326 (331)
T PF00493_consen 323 IRLF 326 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 251
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.15 E-value=2.7e-05 Score=80.18 Aligned_cols=174 Identities=20% Similarity=0.296 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh--cCCCe---eeechh------hHHHHH---hh
Q 007367 279 LELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE--AGVPF---FSCAAS------EFVELF---VG 344 (606)
Q Consensus 279 ~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e--~g~pf---i~vs~s------e~~~~~---~G 344 (606)
.++.++.+.|.... ...+-|.|+|++|+|||+||+.+++. ....| +.++.+ ++.... .+
T Consensus 3 ~~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 34566666655422 23456899999999999999999987 33222 222221 111111 11
Q ss_pred hh---------hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 345 VG---------ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 345 ~~---------~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
.. .......+...-...+++|+||+++... .+..+...+.... .+..||.||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~~~kilvTTR 137 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE----------------DLEELREPLPSFS--SGSKILVTTR 137 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH----------------HH-------HCHH--SS-EEEEEES
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccc----------------ccccccccccccc--cccccccccc
Confidence 11 1223333334444558999999997651 2223333322222 2345666776
Q ss_pred CCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCC----CCCcccHHHHHHhCCCCCHHHHHHHH
Q 007367 416 RPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA----LAKDVDFEKISRRTPGFTGADLQNLM 482 (606)
Q Consensus 416 ~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~----l~~dvdl~~La~~t~G~SgaDL~~Lv 482 (606)
..... ..... -...++++..+.++-.++|........ -..+.....+++.+.| .+-.|..+.
T Consensus 138 ~~~v~-~~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 138 DRSVA-GSLGG---TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp CGGGG-TTHHS---CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccc-ccccc---ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 54321 11111 146789999999999999998875443 1112235788888876 555555443
No 252
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.14 E-value=3.3e-05 Score=95.05 Aligned_cols=174 Identities=17% Similarity=0.252 Sum_probs=99.6
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe---eeech------
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF---FSCAA------ 335 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf---i~vs~------ 335 (606)
...+++++|.+...++|.+++.. +....+-+-|+|++|+||||||+++++.....| +.++.
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 45688999999988877766642 112245689999999999999999988764432 11110
Q ss_pred -hh--------------HHHHHhhh----h---hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHH
Q 007367 336 -SE--------------FVELFVGV----G---ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTIN 393 (606)
Q Consensus 336 -se--------------~~~~~~G~----~---~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln 393 (606)
.. +...+... . ...+ ..++..-..++.+|+||++|.. ..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~----------------~~l~ 312 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQ----------------DVLD 312 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCH----------------HHHH
Confidence 00 00000000 0 0000 1122223356789999998753 2333
Q ss_pred HHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc----HHHHHHh
Q 007367 394 QLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD----FEKISRR 469 (606)
Q Consensus 394 ~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd----l~~La~~ 469 (606)
.+....+.+. .+-.||.||...+ +.+....++.++++.|+.++..+++..++-+..... .+ ..++++.
T Consensus 313 ~L~~~~~~~~--~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~ 384 (1153)
T PLN03210 313 ALAGQTQWFG--SGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALR 384 (1153)
T ss_pred HHHhhCccCC--CCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence 4443333222 2345666777544 333234678899999999999999998875433222 12 2345556
Q ss_pred CCCC
Q 007367 470 TPGF 473 (606)
Q Consensus 470 t~G~ 473 (606)
+.|.
T Consensus 385 c~GL 388 (1153)
T PLN03210 385 AGNL 388 (1153)
T ss_pred hCCC
Confidence 6654
No 253
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=5.1e-05 Score=79.52 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=81.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH--------HH-hh----hhhHHHHHHHHHHHc----CCC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE--------LF-VG----VGASRVRDLFEKAKS----KAP 362 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~--------~~-~G----~~~~~vr~lF~~A~~----~aP 362 (606)
+.|.++||+||.|+||+.+|.++|..+-+.--.-+|..+.. .. .+ -+...+|++.+.+.. +..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 56778999999999999999999997744211111211100 00 01 134456666665543 334
Q ss_pred eEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCC
Q 007367 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 439 (606)
Q Consensus 363 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~P 439 (606)
.|++||++|.+. ....|.||+.++. +..++++|..|+.++.|.+.+++ |+ ..+.|+++
T Consensus 97 kv~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 699999999993 3577889999985 55678888888999999999998 55 34555443
No 254
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.12 E-value=1e-05 Score=80.02 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=64.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH-HHHhhh----------------------hhHHHHH
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-ELFVGV----------------------GASRVRD 352 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~-~~~~G~----------------------~~~~vr~ 352 (606)
.....-++++||||+|||+++..++.+. +.+.++++..++. +.+... ....+..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 3344568999999999999999887543 6677777775421 111100 0111333
Q ss_pred HHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 353 LFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 353 lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
+.+.+....+++|+||-|..+....... ........+..++..|..+....++.++.+..
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~~~~~~---~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYRLELSD---DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhHHHhCC---ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4444555678999999999986422110 11122233444444444443345566666644
No 255
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.10 E-value=2.1e-05 Score=79.94 Aligned_cols=126 Identities=23% Similarity=0.296 Sum_probs=73.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLG 382 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~ 382 (606)
.+..++||.|||||.++|.+|..+|.+++.++|++-.+. ..+..+|.-+... -+-+.+||++.+.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~-------- 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLS-------- 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSS--------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhhh--------
Confidence 467899999999999999999999999999999875542 3345555443332 2689999999982
Q ss_pred CCChhHHHHHHHHHHHhc-cCC--------------CCCcEEEEEeeCC----CCCccccccCCCccccccccCCCCHHH
Q 007367 383 GGNDEREQTINQLLTEMD-GFS--------------GNSGVIVLAATNR----PDVLDSALLRPGRFDRQVTVDRPDVAG 443 (606)
Q Consensus 383 ~~~~e~~~~Ln~LL~eld-~~~--------------~~~~ViVIaaTN~----p~~LD~aLlRpgRFd~~I~v~~Pd~~e 443 (606)
.+.-.++.+.+..+. .+. -+.++-++.|.|. ...||+.|+. -| |.+.+..||.+.
T Consensus 98 ---~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~ 171 (231)
T PF12774_consen 98 ---EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSL 171 (231)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHH
T ss_pred ---HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHH
Confidence 333333333333321 111 1122445556663 3468888886 45 788999999876
Q ss_pred HHHHHH
Q 007367 444 RVKILQ 449 (606)
Q Consensus 444 R~~IL~ 449 (606)
..+++-
T Consensus 172 I~ei~L 177 (231)
T PF12774_consen 172 IAEILL 177 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 256
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.08 E-value=9.6e-06 Score=93.16 Aligned_cols=220 Identities=25% Similarity=0.301 Sum_probs=126.4
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCC--CCCceEEEEcCCCChHHHHHHHHHHhcCCCeee-echhhHHHHHhhh
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGA--KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS-CAASEFVELFVGV 345 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~--~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~-vs~se~~~~~~G~ 345 (606)
-.|.|++.+|+.+. +..+....+...-|. +---+|||.|.||||||.|.|.+++-+..-++. ..++. -+|.
T Consensus 286 PsIyG~e~VKkAil--LqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAIL--LQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGL 359 (682)
T ss_pred ccccCcHHHHHHHH--HHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCc
Confidence 35788888887663 222322222111122 223479999999999999999999877543332 22211 1222
Q ss_pred hhHHHHHHH-H----HHH---cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-----------CCC
Q 007367 346 GASRVRDLF-E----KAK---SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNS 406 (606)
Q Consensus 346 ~~~~vr~lF-~----~A~---~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-----------~~~ 406 (606)
++.-+++-+ . .+- ...+.|..|||+|.+-. ...+.+...|+... -+.
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~--------------~dr~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE--------------EDRVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh--------------HHHHHHHHHHHhcEeeecccceeeecch
Confidence 222222222 0 000 01245999999999821 23345566666431 122
Q ss_pred cEEEEEeeCCCC-------------CccccccCCCccccccc-cCCCCHHHHH----HHHHHHh----------------
Q 007367 407 GVIVLAATNRPD-------------VLDSALLRPGRFDRQVT-VDRPDVAGRV----KILQVHS---------------- 452 (606)
Q Consensus 407 ~ViVIaaTN~p~-------------~LD~aLlRpgRFd~~I~-v~~Pd~~eR~----~IL~~~l---------------- 452 (606)
..-|+||+|... .|++.|++ |||..+. .+.|+.+.-. .++..|.
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 356788888653 37889999 9998553 3445554222 2444442
Q ss_pred ---------------cCC--CCCCcccHHHHHH-----h----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 007367 453 ---------------RGK--ALAKDVDFEKISR-----R----------TPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 453 ---------------~~~--~l~~dvdl~~La~-----~----------t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~e 500 (606)
++. +.-.+...+.|.. + +...|.++|+.+++-+-..|..+-.+.++.+
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEE 583 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHH
Confidence 111 1111111111111 1 1225789999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007367 501 EISDALERII 510 (606)
Q Consensus 501 dl~~Al~ri~ 510 (606)
|+.+|++-+.
T Consensus 584 D~~eAi~lv~ 593 (682)
T COG1241 584 DVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 257
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00015 Score=76.02 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=95.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------e-echhhHHH------HHh---h--hhhHHHHHHHHHHHc-
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-------S-CAASEFVE------LFV---G--VGASRVRDLFEKAKS- 359 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi-------~-vs~se~~~------~~~---G--~~~~~vr~lF~~A~~- 359 (606)
+.+.++||+|| +||+++|+++|..+-+.-- . -+|..+.. .++ | -+...+|++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56778999996 6899999999986633110 0 01111110 000 1 134567776666543
Q ss_pred ---CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCcccccccc
Q 007367 360 ---KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTV 436 (606)
Q Consensus 360 ---~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v 436 (606)
+...|++||++|.+. ....|.||+.++. +..++++|..|+.++.|-|.+++ |+ ..+.|
T Consensus 100 p~~~~~kV~II~~ad~m~--------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH--------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeC
Confidence 234699999999993 3578999999995 45567888888889999999999 65 56777
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHH
Q 007367 437 DRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLM 482 (606)
Q Consensus 437 ~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv 482 (606)
+. +.++..+++. +.++.. +...++....| ++.....+.
T Consensus 161 ~~-~~~~~~~~L~----~~g~~~--~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 161 PK-NEAYLIQLLE----QKGLLK--TQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred CC-cHHHHHHHHH----HcCCCh--HHHHHHHHHCC-CHHHHHHHh
Confidence 55 5555555554 223322 22334444444 565555554
No 258
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.00 E-value=7e-06 Score=78.46 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=33.2
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---eeeechhhH
Q 007367 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP---FFSCAASEF 338 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p---fi~vs~se~ 338 (606)
++|.++..++|...+.. .. ...++.++|+|++|+|||++.+++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57777776666555541 11 2335789999999999999999887655322 555555443
No 259
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.00 E-value=0.00012 Score=82.85 Aligned_cols=121 Identities=31% Similarity=0.330 Sum_probs=69.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhH-----HHHHHHHHHH---cCCCeEEEEccccchh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGAS-----RVRDLFEKAK---SKAPCIVFIDEIDAVG 374 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~-----~vr~lF~~A~---~~aP~ILfIDEID~L~ 374 (606)
-+|||+|.||||||.+.+.+++-+..-.+ .++-. +.-+|.++- .-+++.-+.- .....|-.|||+|.+.
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 47999999999999999999986643222 22110 001111110 0111111100 0112388899999993
Q ss_pred hccCCCCCCCChhHHHHHHHHHHHhccC-----------CCCCcEEEEEeeCCCC-------------CccccccCCCcc
Q 007367 375 RQRGAGLGGGNDEREQTINQLLTEMDGF-----------SGNSGVIVLAATNRPD-------------VLDSALLRPGRF 430 (606)
Q Consensus 375 ~~r~~~~~~~~~e~~~~Ln~LL~eld~~-----------~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRF 430 (606)
. .+-+-|++.|+.. .-+.+.-|||+.|... .|++.|++ ||
T Consensus 540 d--------------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RF 603 (804)
T KOG0478|consen 540 D--------------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RF 603 (804)
T ss_pred H--------------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hh
Confidence 2 1223344444432 1133456899999432 37899999 99
Q ss_pred cccc-ccCCCCHH
Q 007367 431 DRQV-TVDRPDVA 442 (606)
Q Consensus 431 d~~I-~v~~Pd~~ 442 (606)
|.++ -++.||..
T Consensus 604 DLIylllD~~DE~ 616 (804)
T KOG0478|consen 604 DLIFLLLDKPDER 616 (804)
T ss_pred cEEEEEecCcchh
Confidence 9865 66777766
No 260
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.00 E-value=1.2e-05 Score=83.61 Aligned_cols=135 Identities=21% Similarity=0.348 Sum_probs=71.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC-C--eeeechhhHHHHHhhhhhHHHHHHHHHH-----------HcCCCeEEEEc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGV-P--FFSCAASEFVELFVGVGASRVRDLFEKA-----------KSKAPCIVFID 368 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~-p--fi~vs~se~~~~~~G~~~~~vr~lF~~A-----------~~~aP~ILfID 368 (606)
+.+||+||+|||||.+++..-.+..- . ...++++.... ...+..+++.. ..++.+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 47999999999999999987765532 2 22233332211 11122211111 11345799999
Q ss_pred cccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCC--------CcEEEEEeeCCCC---CccccccCCCccccccccC
Q 007367 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN--------SGVIVLAATNRPD---VLDSALLRPGRFDRQVTVD 437 (606)
Q Consensus 369 EID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~--------~~ViVIaaTN~p~---~LD~aLlRpgRFd~~I~v~ 437 (606)
|+..-....- +....-+.+.|++.. .++-.. .++.+|+|.+... .+++.++| .| .++.++
T Consensus 108 DlN~p~~d~y-----gtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~ 178 (272)
T PF12775_consen 108 DLNMPQPDKY-----GTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIP 178 (272)
T ss_dssp TTT-S---TT-----S--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE--
T ss_pred ccCCCCCCCC-----CCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEec
Confidence 9986533211 111112233333332 122111 2477889888543 47888887 66 588999
Q ss_pred CCCHHHHHHHHHHHh
Q 007367 438 RPDVAGRVKILQVHS 452 (606)
Q Consensus 438 ~Pd~~eR~~IL~~~l 452 (606)
.|+.+....|+...+
T Consensus 179 ~p~~~sl~~If~~il 193 (272)
T PF12775_consen 179 YPSDESLNTIFSSIL 193 (272)
T ss_dssp --TCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 999998888776554
No 261
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.98 E-value=2.5e-05 Score=87.65 Aligned_cols=219 Identities=20% Similarity=0.262 Sum_probs=126.4
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhcC--CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhh
Q 007367 268 FADVAGADQAKLELQEVVDFLKNPDKYTALG--AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGV 345 (606)
Q Consensus 268 f~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG--~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~ 345 (606)
|-.|.|.+.+|.-+. +..+-.-.++..-| ++-.-+|+|+|.|||||+-+.+++++-+-..++. ++..- .-.|.
T Consensus 344 ~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaS--SaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGIL--LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKAS--SAAGL 418 (764)
T ss_pred CccccchHHHHhhHH--HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCccc--ccccc
Confidence 566889999987653 33333333332222 2223489999999999999999998866544332 22110 00111
Q ss_pred hhHHHHH-----------HHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-----------
Q 007367 346 GASRVRD-----------LFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----------- 403 (606)
Q Consensus 346 ~~~~vr~-----------lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~----------- 403 (606)
++.-+++ .+-.|.. .|-.|||+|.+..+ -...+++.|+...
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADn---GICCIDEFDKMd~~--------------dqvAihEAMEQQtISIaKAGv~aT 481 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADN---GICCIDEFDKMDVK--------------DQVAIHEAMEQQTISIAKAGVVAT 481 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccC---ceEEechhcccChH--------------hHHHHHHHHHhheehheecceEEe
Confidence 1111111 0111222 38899999999432 1223555565431
Q ss_pred CCCcEEEEEeeCCCC-------------CccccccCCCccccc-cccCCCCHHHHHHHHHHHhcCC--------------
Q 007367 404 GNSGVIVLAATNRPD-------------VLDSALLRPGRFDRQ-VTVDRPDVAGRVKILQVHSRGK-------------- 455 (606)
Q Consensus 404 ~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~~-I~v~~Pd~~eR~~IL~~~l~~~-------------- 455 (606)
-+.+.-||||+|... .+++++++ |||.. |-++-|+...-..|-++.+...
T Consensus 482 LnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~ 559 (764)
T KOG0480|consen 482 LNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYT 559 (764)
T ss_pred ecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhcccccccccccccc
Confidence 122345788888642 37889999 99984 4667777655444333222110
Q ss_pred ---------------CCCCccc-------HHHHH--------HhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007367 456 ---------------ALAKDVD-------FEKIS--------RRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (606)
Q Consensus 456 ---------------~l~~dvd-------l~~La--------~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~A 505 (606)
+...... +..|- +...+.|.++|+.+++-+-.+|...-.+.++.+|+++|
T Consensus 560 ~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea 639 (764)
T KOG0480|consen 560 LEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEA 639 (764)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH
Confidence 0000000 01111 11235789999999999988888888899999999999
Q ss_pred HHHHH
Q 007367 506 LERII 510 (606)
Q Consensus 506 l~ri~ 510 (606)
++-..
T Consensus 640 ~eLlk 644 (764)
T KOG0480|consen 640 VELLK 644 (764)
T ss_pred HHHHH
Confidence 87543
No 262
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00012 Score=75.39 Aligned_cols=121 Identities=13% Similarity=0.077 Sum_probs=81.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCee------eechhhHHHH------H-----hhhhhHHHHHHHHHHHc---
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF------SCAASEFVEL------F-----VGVGASRVRDLFEKAKS--- 359 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi------~vs~se~~~~------~-----~G~~~~~vr~lF~~A~~--- 359 (606)
.+|.++||+||.|+||..+|.++|..+-+.-- .-+|..+... + ..-+...+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 45788999999999999999999987632110 0111111100 0 01234456665554432
Q ss_pred --CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccC
Q 007367 360 --KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVD 437 (606)
Q Consensus 360 --~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~ 437 (606)
+...|++||++|.+. ....|.||..++. +..++++|..|+.++.+.+.+++ |.. .+.++
T Consensus 85 e~~~~KV~II~~ae~m~--------------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN--------------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhhC--------------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 234699999999993 3578999999994 56678899999999999999999 653 35555
Q ss_pred CC
Q 007367 438 RP 439 (606)
Q Consensus 438 ~P 439 (606)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 263
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.95 E-value=4.6e-05 Score=84.64 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=56.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh------hh--------hhHHHHHHHHHHHcCC
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV------GV--------GASRVRDLFEKAKSKA 361 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~------G~--------~~~~vr~lF~~A~~~a 361 (606)
.....-+||+|+||+|||+|+..++... +.++++++..+-.+... |. ....+..+++..+...
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 3444568999999999999999998754 67888888765443321 11 1123556777777778
Q ss_pred CeEEEEccccchhhc
Q 007367 362 PCIVFIDEIDAVGRQ 376 (606)
Q Consensus 362 P~ILfIDEID~L~~~ 376 (606)
|.+|+||+|..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 999999999988643
No 264
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.92 E-value=0.00039 Score=72.50 Aligned_cols=217 Identities=17% Similarity=0.196 Sum_probs=108.3
Q ss_pred cccchHHHHHHHHHHH-HhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCeeee--c-----hhh
Q 007367 271 VAGADQAKLELQEVVD-FLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-----VPFFSC--A-----ASE 337 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~-~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g-----~pfi~v--s-----~se 337 (606)
+.|+.-+++.+-..+. ++.++.- +.|--+=|+|++||||.++++.||+... -+++.. . -..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 7899988888777665 4655532 3355667899999999999999999762 122211 0 111
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH---hccCCCCCcEEEEEee
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE---MDGFSGNSGVIVLAAT 414 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e---ld~~~~~~~ViVIaaT 414 (606)
-++.|..+-...++ +.+...+.+|+++||.|.+ +...-+++.-+|.. .++.. ..+-|+|.-+
T Consensus 158 ~ie~Yk~eL~~~v~---~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~-frkaIFIfLS 222 (344)
T KOG2170|consen 158 KIEDYKEELKNRVR---GTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVD-FRKAIFIFLS 222 (344)
T ss_pred HHHHHHHHHHHHHH---HHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhcccccccccc-ccceEEEEEc
Confidence 12233333333343 3444556679999999999 23333344444442 11111 1234566656
Q ss_pred CCCC-Ccc---ccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCC---CHHHHHHHHHHHHH
Q 007367 415 NRPD-VLD---SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGF---TGADLQNLMNEAAI 487 (606)
Q Consensus 415 N~p~-~LD---~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~---SgaDL~~Lv~eA~~ 487 (606)
|.-. .+. -...+.|+-.+.+.+.--...-+...............-++ ..++...--| .-+++...++..
T Consensus 223 N~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~-~~lid~fIPFLPLek~hV~~C~r~e-- 299 (344)
T KOG2170|consen 223 NAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLIS-NNLIDHFIPFLPLEKRHVRSCIRAE-- 299 (344)
T ss_pred CCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccch-hhHHhhccCcCcccHHHHHHHHHHH--
Confidence 6443 222 22335565555555533332222222221111111222222 2233333223 334444433322
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCC
Q 007367 488 LAARRDLKEISKDEISDALERIIAGP 513 (606)
Q Consensus 488 ~A~rr~~~~It~edl~~Al~ri~~g~ 513 (606)
-..++ -..+.+-+++.++....-+
T Consensus 300 -l~~rg-~~~d~~~~erva~~l~ffp 323 (344)
T KOG2170|consen 300 -LRKRG-LAPDQDFVERVANSLSFFP 323 (344)
T ss_pred -HHhcc-cccchHHHHHHHHhhcccc
Confidence 22233 4566666666666655543
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.91 E-value=8.3e-05 Score=71.58 Aligned_cols=103 Identities=26% Similarity=0.323 Sum_probs=58.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh------hh-----------------------hhH----
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV------GV-----------------------GAS---- 348 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~------G~-----------------------~~~---- 348 (606)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |. +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6999999999999999886643 66777776532211100 00 000
Q ss_pred -HHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 349 -RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 349 -~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
....+...+....|.+|+|||+..+... ........+..++..+... ++.+|.+++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~~----g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKRF----GVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHHC----CCEEEEEecccc
Confidence 1233444445567899999999987532 1122233444555555422 345555555433
No 266
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.90 E-value=5.7e-05 Score=81.95 Aligned_cols=78 Identities=26% Similarity=0.342 Sum_probs=54.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh------hh--------hhHHHHHHHHHHHcCC
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV------GV--------GASRVRDLFEKAKSKA 361 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~------G~--------~~~~vr~lF~~A~~~a 361 (606)
+....-++|+|+||+|||+|+..+|... +.++++++..+-.+... +. ....+..+++......
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 4444568999999999999999998754 45788877654322211 11 1223456677777788
Q ss_pred CeEEEEccccchhhc
Q 007367 362 PCIVFIDEIDAVGRQ 376 (606)
Q Consensus 362 P~ILfIDEID~L~~~ 376 (606)
|.+|+||+|..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999998543
No 267
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.86 E-value=4.1e-05 Score=81.30 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHHhcCchhh----hhcC---CCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-eeechhhHHHH----
Q 007367 274 ADQAKLELQEVVDFLKNPDKY----TALG---AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-FSCAASEFVEL---- 341 (606)
Q Consensus 274 ~d~~K~eL~eiv~~Lk~p~~~----~~lG---~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf-i~vs~se~~~~---- 341 (606)
+..+.+.|.++.+.+..+..- ..+. ..+|+|+.|||+-|.|||+|.-..-..+.++- ..+.-..|.-.
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 344555566665543322211 1122 33789999999999999999999887764422 22222233221
Q ss_pred ---HhhhhhHHHHHHH-HHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC-
Q 007367 342 ---FVGVGASRVRDLF-EKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR- 416 (606)
Q Consensus 342 ---~~G~~~~~vr~lF-~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~- 416 (606)
+.|+.. -+..+- +.++. -.||+|||++.- +-.....+..|+.+|= ..+|++++|+|.
T Consensus 110 l~~l~g~~d-pl~~iA~~~~~~--~~vLCfDEF~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 110 LHTLQGQTD-PLPPIADELAAE--TRVLCFDEFEVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHcCCCC-ccHHHHHHHHhc--CCEEEeeeeeec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 122221 111111 11222 249999999753 2223456778888765 358999999996
Q ss_pred CCCc
Q 007367 417 PDVL 420 (606)
Q Consensus 417 p~~L 420 (606)
|+.|
T Consensus 172 P~~L 175 (367)
T COG1485 172 PDNL 175 (367)
T ss_pred hHHh
Confidence 4444
No 268
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00022 Score=75.28 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=87.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-----------C--eeeechhhHHHHHhhhhhHHHHHHHHHHHc-----CC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGV-----------P--FFSCAASEFVELFVGVGASRVRDLFEKAKS-----KA 361 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~-----------p--fi~vs~se~~~~~~G~~~~~vr~lF~~A~~-----~a 361 (606)
+.+...||+|+.|.||+.+|+.++..+-+ | ++.++.. + ...+...++++.+.... +.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g--~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---D--KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---C--CcCCHHHHHHHHHHhccCCcccCC
Confidence 34567899999999999999999987622 1 1112100 0 00123456665555532 24
Q ss_pred CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCH
Q 007367 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441 (606)
Q Consensus 362 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~ 441 (606)
..|++||++|.+. ....|.||..++. +...+++|..|+.++.|-+.+++ |+ .++++.+++.
T Consensus 91 ~KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 5699999998883 3467889999985 44556777777788889899988 54 5789999998
Q ss_pred HHHHHHHHH
Q 007367 442 AGRVKILQV 450 (606)
Q Consensus 442 ~eR~~IL~~ 450 (606)
++..+.|..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 887776654
No 269
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.85 E-value=0.00014 Score=78.19 Aligned_cols=162 Identities=20% Similarity=0.305 Sum_probs=89.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC--eeeechhhHHHHH--------hhhhh-----------HHHHHHHHHH
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAASEFVELF--------VGVGA-----------SRVRDLFEKA 357 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p--fi~vs~se~~~~~--------~G~~~-----------~~vr~lF~~A 357 (606)
..+|+|++|||.-|||||+|.-.+-..+... =-.+...+|+-.. ...+. .-+.-+-++.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 4569999999999999999998886544210 0011112222110 00000 0011111111
Q ss_pred HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC-CCCccccccCCCcccccccc
Q 007367 358 KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR-PDVLDSALLRPGRFDRQVTV 436 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRFd~~I~v 436 (606)
. ..-++|.+||+..- +-...-+|++|...+- +.+|+++||+|+ |+.|-..=+.+.-|.
T Consensus 191 a-~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR~~F~----- 249 (467)
T KOG2383|consen 191 A-EEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQRENFI----- 249 (467)
T ss_pred h-hhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhhhhhh-----
Confidence 1 11369999999764 1222345667776654 358999999997 454443322212232
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCC-C--CCHH-HHHHHHHHHHH
Q 007367 437 DRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTP-G--FTGA-DLQNLMNEAAI 487 (606)
Q Consensus 437 ~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~-G--~Sga-DL~~Lv~eA~~ 487 (606)
| -..+|+.+++-..+...+|+...+.... + |.+. |...++++-..
T Consensus 250 --P----fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 250 --P----FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred --h----HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 1 2567888888777888888884333222 1 2333 78777777653
No 270
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.82 E-value=4.7e-05 Score=67.87 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g 327 (606)
|.|+||||+|||++|+.|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987663
No 271
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.80 E-value=5.6e-05 Score=76.29 Aligned_cols=24 Identities=46% Similarity=0.751 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~ 324 (606)
.|..+||||+||+|||++|+.+++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 366799999999999999999974
No 272
>PHA00729 NTP-binding motif containing protein
Probab=97.79 E-value=4.6e-05 Score=77.03 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
+++|+|+||||||+||.+|+.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.77 E-value=0.00013 Score=73.03 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=62.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH----HHHhhh-------------------hhHHHH
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV----ELFVGV-------------------GASRVR 351 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~----~~~~G~-------------------~~~~vr 351 (606)
|.....-++|+|+||+|||+++..++.+. +.+++++++..+. ....+. ....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 34444568999999999999999998744 6777777776221 111110 001112
Q ss_pred HHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 352 DLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 352 ~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
.+..... ..+.+|+||.+.++....-.. .....+..+.+.+++..+..+....++.+|.+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2222222 578899999999886432100 0112223344455444444333344556665533
No 274
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.75 E-value=0.00011 Score=86.99 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=122.7
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHHhcCch--hhhhcCCCCC-c-eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPD--KYTALGAKIP-K-GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~--~~~~lG~~~p-~-gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.+.....+....++.|....-..+.+-.+-.++++ .|...+.... . .+|++||||+|||+.+..+|.+.|..+++.
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~ 388 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK 388 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeec
Confidence 34445556677888888876554444333332221 1111111111 1 369999999999999999999999999999
Q ss_pred chhhHHHHHhh-----h--hhHHHHHHH---HHHHc-CCC-eEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc
Q 007367 334 AASEFVELFVG-----V--GASRVRDLF---EKAKS-KAP-CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (606)
Q Consensus 334 s~se~~~~~~G-----~--~~~~vr~lF---~~A~~-~aP-~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~ 401 (606)
+.++..+.... . +...+...| ..... ... .||++||+|.+.. . +...-..+.++..
T Consensus 389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~---- 456 (871)
T KOG1968|consen 389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCK---- 456 (871)
T ss_pred CccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHH----
Confidence 99866543221 1 112222223 00000 112 3999999999854 1 1111123333333
Q ss_pred CCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCC-CCcccHHHHHHhCCCCCHHHHHH
Q 007367 402 FSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKAL-AKDVDFEKISRRTPGFTGADLQN 480 (606)
Q Consensus 402 ~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l-~~dvdl~~La~~t~G~SgaDL~~ 480 (606)
...+-+|+++|..+......+. |.+..++|+.|+...+..-+...+....+ ..+-.++++.+.+ ++||++
T Consensus 457 ---ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~ 527 (871)
T KOG1968|consen 457 ---KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQ 527 (871)
T ss_pred ---hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHH
Confidence 2234577888877654443333 55567899999999888777665543332 2344567777765 458877
Q ss_pred HHHHHHHH
Q 007367 481 LMNEAAIL 488 (606)
Q Consensus 481 Lv~eA~~~ 488 (606)
.++.-...
T Consensus 528 ~i~~lq~~ 535 (871)
T KOG1968|consen 528 IIMQLQFW 535 (871)
T ss_pred HHHHHhhh
Confidence 77765544
No 275
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.74 E-value=0.00012 Score=80.50 Aligned_cols=220 Identities=26% Similarity=0.345 Sum_probs=124.4
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCC--CceEEEEcCCCChHHHHHHHHHHhcCCCeeee-chhhHHHHHhhhh
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI--PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC-AASEFVELFVGVG 346 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~--p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v-s~se~~~~~~G~~ 346 (606)
+|.|.+++|+.|.-++- -.+++-..-|.++ --+|+|.|.||+-|+-|.+.+.+-+-.-.+.- .++. -+|.+
T Consensus 343 EIyGheDVKKaLLLlLV--Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV--GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhh--CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 58999999998864333 2222222223333 34799999999999999999988664433322 1111 12222
Q ss_pred hHHHHH-----------HHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH----hc--cC--CCCCc
Q 007367 347 ASRVRD-----------LFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE----MD--GF--SGNSG 407 (606)
Q Consensus 347 ~~~vr~-----------lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e----ld--~~--~~~~~ 407 (606)
+.-+++ .+-.|.. .|-.|||+|.+.... ...+-+.+++ +. |+ .-+.+
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~---GICCIDEfDKM~e~D-----------RtAIHEVMEQQTISIaKAGI~TtLNAR 482 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADG---GICCIDEFDKMDESD-----------RTAIHEVMEQQTISIAKAGINTTLNAR 482 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccC---ceEeehhhhhhhhhh-----------hHHHHHHHHhhhhhhhhhccccchhhh
Confidence 222221 0111222 388999999994321 1111111111 00 11 11234
Q ss_pred EEEEEeeCCCC-------------CccccccCCCcccccc-ccCCCCHHHHHHHHH----HHhcCCCCCC---cccH---
Q 007367 408 VIVLAATNRPD-------------VLDSALLRPGRFDRQV-TVDRPDVAGRVKILQ----VHSRGKALAK---DVDF--- 463 (606)
Q Consensus 408 ViVIaaTN~p~-------------~LD~aLlRpgRFd~~I-~v~~Pd~~eR~~IL~----~~l~~~~l~~---dvdl--- 463 (606)
.-|+|+.|... .|+.||++ |||..+ -.+.||.+.-..+.+ .|.....-.. .++.
T Consensus 483 ~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~m 560 (721)
T KOG0482|consen 483 TSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLM 560 (721)
T ss_pred HHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHH
Confidence 56888888532 48999999 999844 556677655444433 2222211110 0110
Q ss_pred -------------------HHHH-------H-----hCC-CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007367 464 -------------------EKIS-------R-----RTP-GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (606)
Q Consensus 464 -------------------~~La-------~-----~t~-G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~ 511 (606)
+.+. + .-. --|++.|..+++.+..+|..|-.+.+..+|+.+|+.-.-.
T Consensus 561 R~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~ 640 (721)
T KOG0482|consen 561 RRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEM 640 (721)
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHh
Confidence 1110 0 001 1368889999999999998898899999999999976543
No 276
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.71 E-value=0.00018 Score=75.90 Aligned_cols=160 Identities=19% Similarity=0.355 Sum_probs=96.9
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHH-H--HhcCCCeeeechhhHHHH----
Q 007367 270 DVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV-A--GEAGVPFFSCAASEFVEL---- 341 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAI-A--~e~g~pfi~vs~se~~~~---- 341 (606)
.+.|..+..+.+.+++.. ....+ ...|++.||.|+|||++.... + .+.|-.|+.+....+...
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 366777777778887775 22222 357999999999999866543 3 366767766544322110
Q ss_pred -----------------HhhhhhHHHHHHHHHHHc-----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 342 -----------------FVGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 342 -----------------~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
..|.....+..+....+. ..+.|.++||||.+.+. .++..+..|+..-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHH
Confidence 011122333334433332 23446667899998532 2334444454443
Q ss_pred ccCCCCCcEEEEEeeCCCCC---ccccccCCCccccc-cccCCC-CHHHHHHHHHHHh
Q 007367 400 DGFSGNSGVIVLAATNRPDV---LDSALLRPGRFDRQ-VTVDRP-DVAGRVKILQVHS 452 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~---LD~aLlRpgRFd~~-I~v~~P-d~~eR~~IL~~~l 452 (606)
+ ....++.||+.|.+.+. |.....+ ||... |++.++ ...+..++++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 3 33567999999998875 4567777 89875 555544 5778888888766
No 277
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.70 E-value=0.00026 Score=75.29 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=67.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH-H---hh------------hhhHHHHHHHHHHHcC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL-F---VG------------VGASRVRDLFEKAKSK 360 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~-~---~G------------~~~~~vr~lF~~A~~~ 360 (606)
...+.++|+||||||||+||..++.+. |.+++++++.+..+. + .| ..+..+..+....+..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 334468999999999999988775543 667777776543221 0 01 0122222233334567
Q ss_pred CCeEEEEccccchhhccCCC--CCCC-ChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 361 APCIVFIDEIDAVGRQRGAG--LGGG-NDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 361 aP~ILfIDEID~L~~~r~~~--~~~~-~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
.+++|+||-+.++.++.+-. .+.. .....+.+.++|..+...-...++.+|.+..-
T Consensus 133 ~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQv 191 (321)
T TIGR02012 133 AVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQI 191 (321)
T ss_pred CCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 78999999999987542211 1111 11222344556665555544566677776443
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00017 Score=69.08 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.+.-+.++|+||+|||+++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45578999999999999999999765
No 279
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.67 E-value=0.00033 Score=71.03 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=46.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh----HHHHHh--hh------------------------
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE----FVELFV--GV------------------------ 345 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se----~~~~~~--G~------------------------ 345 (606)
......+++.|+||||||+++..++... |.+.++++..+ +..... |.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 3444578999999999999986554432 56666666432 211110 00
Q ss_pred -hhHHHHHHHHHHHcCCCeEEEEccccchh
Q 007367 346 -GASRVRDLFEKAKSKAPCIVFIDEIDAVG 374 (606)
Q Consensus 346 -~~~~vr~lF~~A~~~aP~ILfIDEID~L~ 374 (606)
....+..+........|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223344555555578899999998874
No 280
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.00025 Score=71.59 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~s 336 (606)
|......++++|+||+|||+++..++.+. |.+.++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 44556679999999999999999996543 6677766653
No 281
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.64 E-value=0.00075 Score=72.42 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=92.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH------HH
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE------LF 342 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~------~~ 342 (606)
.++.+.+.+...|..++. +... ..|..+.|+|..|||||.+.|.+-+..+.+.+.++|-+... ..
T Consensus 6 ~~v~~Re~qi~~L~~Llg---~~~~------~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLG---NNSC------TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhC---CCCc------ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 345666666555554442 2211 46888999999999999999999999999999999866432 10
Q ss_pred ---h------h----hhhHHHH---HHHHH--HHcC--CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC
Q 007367 343 ---V------G----VGASRVR---DLFEK--AKSK--APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF 402 (606)
Q Consensus 343 ---~------G----~~~~~vr---~lF~~--A~~~--aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~ 402 (606)
+ | .....+. .+|.+ +... ..-.|++|.+|.+.. .....++.|+..-+-.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-----------~~a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-----------MDAILLQCLFRLYELL 145 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-----------cchHHHHHHHHHHHHh
Confidence 0 0 0112222 23333 2112 245789999999932 1123444444432222
Q ss_pred CCCCcEEEEEeeCCCCCccccccCCCcccc-ccccCCCCHHHHHHHHHHHh
Q 007367 403 SGNSGVIVLAATNRPDVLDSALLRPGRFDR-QVTVDRPDVAGRVKILQVHS 452 (606)
Q Consensus 403 ~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~-~I~v~~Pd~~eR~~IL~~~l 452 (606)
.. ..+.+|...-..+ +.-+.+-|-++- +++||.|+.++-..|+..--
T Consensus 146 ~~-~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 146 NE-PTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CC-CceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22 2333333322222 122222334433 67999999999999987543
No 282
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.62 E-value=0.0015 Score=71.55 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCeeeechhhHHHHHhhhhhHHHHHHH
Q 007367 276 QAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASEFVELFVGVGASRVRDLF 354 (606)
Q Consensus 276 ~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi~vs~se~~~~~~G~~~~~vr~lF 354 (606)
.....|..++.|+.. ..++++.||+|||||+++.+++... -..=-.++.+.+...... ..+
T Consensus 194 ~k~~~L~rl~~fve~-----------~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~-------~~l 255 (449)
T TIGR02688 194 QKLLLLARLLPLVEP-----------NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIST-------RQI 255 (449)
T ss_pred HHHHHHHhhHHHHhc-----------CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHH-------HHH
Confidence 334445555566554 3469999999999999999997762 111033444444432211 112
Q ss_pred HHHHcCCCeEEEEccccch
Q 007367 355 EKAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 355 ~~A~~~aP~ILfIDEID~L 373 (606)
... ...++|+|||+..+
T Consensus 256 g~v--~~~DlLI~DEvgyl 272 (449)
T TIGR02688 256 GLV--GRWDVVAFDEVATL 272 (449)
T ss_pred hhh--ccCCEEEEEcCCCC
Confidence 221 34569999999886
No 283
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.61 E-value=0.00019 Score=68.00 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
.+..++|+|+||||||++|+.+|..++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999888543
No 284
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.0017 Score=71.25 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=72.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG 383 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~ 383 (606)
.++|+||.+||||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 789999999999999988888775546666655544322211 11122222222224469999999987
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHH
Q 007367 384 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVK 446 (606)
Q Consensus 384 ~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ 446 (606)
+..+..+..+..... . ++++.+++........+-.=+||. ..+.+.+.+..|...
T Consensus 107 --~~W~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 234455555544322 1 344444444333333333345684 677787888888864
No 285
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.59 E-value=0.00035 Score=77.82 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=53.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh------hh--------hhHHHHHHHHHHHcCC
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV------GV--------GASRVRDLFEKAKSKA 361 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~------G~--------~~~~vr~lF~~A~~~a 361 (606)
.....-+||.|+||+|||+|+..++... +.++++++..+-.+... +. .+..+..+.+.+....
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 3444568999999999999999987754 45788887754332211 10 1123455666667778
Q ss_pred CeEEEEccccchhh
Q 007367 362 PCIVFIDEIDAVGR 375 (606)
Q Consensus 362 P~ILfIDEID~L~~ 375 (606)
|.+|+||.|..+..
T Consensus 171 ~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 171 PQACVIDSIQTLYS 184 (454)
T ss_pred CcEEEEecchhhcc
Confidence 99999999999854
No 286
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.59 E-value=0.00032 Score=72.83 Aligned_cols=187 Identities=25% Similarity=0.348 Sum_probs=98.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH------hcCCCeeeechhhHHHH-----Hhhh------hhHHHHH-HHHHHHcCCC
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAG------EAGVPFFSCAASEFVEL-----FVGV------GASRVRD-LFEKAKSKAP 362 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~------e~g~pfi~vs~se~~~~-----~~G~------~~~~vr~-lF~~A~~~aP 362 (606)
....+||.||.|.||++||+.|-. .+..+|++++|..+... ..|. ++..-+. ++..|. .
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsad---g 283 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSAD---G 283 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCC---C
Confidence 344689999999999999999843 45789999999876431 1111 1111121 222222 2
Q ss_pred eEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc---CC------CCCcEEEEEeeCCCCCccccccCCCcccc-
Q 007367 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG---FS------GNSGVIVLAATNRPDVLDSALLRPGRFDR- 432 (606)
Q Consensus 363 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~---~~------~~~~ViVIaaTN~p~~LD~aLlRpgRFd~- 432 (606)
.+||+|||..++.. + +. .||+.++. +. -.+.+-+|+-|.+.- ....-.|+|..
T Consensus 284 gmlfldeigelgad----------e-qa---mllkaieekrf~pfgsdr~v~sdfqliagtvrdl---rq~vaeg~fred 346 (531)
T COG4650 284 GMLFLDEIGELGAD----------E-QA---MLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDL---RQLVAEGKFRED 346 (531)
T ss_pred ceEehHhhhhcCcc----------H-HH---HHHHHHHhhccCCCCCccccccchHHhhhhHHHH---HHHHhccchHHH
Confidence 49999999998532 1 12 23443332 11 122345555555421 11112233332
Q ss_pred ------ccccCCCCHHHHHHHHH--------HHhcCCCCCCccc------HHHHH---HhCCCCCHHHHHHHHHHHHHHH
Q 007367 433 ------QVTVDRPDVAGRVKILQ--------VHSRGKALAKDVD------FEKIS---RRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 433 ------~I~v~~Pd~~eR~~IL~--------~~l~~~~l~~dvd------l~~La---~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
...|.+|...+|.+-++ .|....+-.-..+ +..++ +.....+.++|..-+.+.+.+|
T Consensus 347 l~arinlwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatla 426 (531)
T COG4650 347 LYARINLWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLA 426 (531)
T ss_pred HHHhhheeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHh
Confidence 45677788777765332 2332211111111 11111 1122235567766666554444
Q ss_pred HHhCCCCCCHHHHHHHHHHHH
Q 007367 490 ARRDLKEISKDEISDALERII 510 (606)
Q Consensus 490 ~rr~~~~It~edl~~Al~ri~ 510 (606)
....|+.+.+++.+.+..
T Consensus 427 ---d~grit~~~ve~ei~rlr 444 (531)
T COG4650 427 ---DSGRITLDVVEDEINRLR 444 (531)
T ss_pred ---cCCceeHHHHHHHHHHHH
Confidence 556688888877776654
No 287
>PF14516 AAA_35: AAA-like domain
Probab=97.58 E-value=0.0031 Score=67.48 Aligned_cols=170 Identities=15% Similarity=0.108 Sum_probs=92.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH-----------HH------------------hhh--hhHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE-----------LF------------------VGV--GASR 349 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~-----------~~------------------~G~--~~~~ 349 (606)
-+.+.||..+|||++...+.+.+ |...+++++..+.. .+ ... ....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 47999999999999998886544 67777776654211 11 000 1122
Q ss_pred HHHHHHHH---HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC---CCCcE-EEEEeeCCCCCccc
Q 007367 350 VRDLFEKA---KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---GNSGV-IVLAATNRPDVLDS 422 (606)
Q Consensus 350 vr~lF~~A---~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~---~~~~V-iVIaaTN~p~~LD~ 422 (606)
....|+.. ....|-||+|||||.+... .......+..|-...+.-. ....+ ++++-+..+.....
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~--------~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEY--------PQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccC--------cchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 33334432 2256889999999999542 1122233333333322111 11223 23332222222222
Q ss_pred cccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHH
Q 007367 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEA 485 (606)
Q Consensus 423 aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA 485 (606)
.-.+|-.+...|.++.-+.++-..+++.|-.. +. ...++.+-..+.| -+-=+..+|...
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~-~~~~~~l~~~tgG-hP~Lv~~~~~~l 243 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS-QEQLEQLMDWTGG-HPYLVQKACYLL 243 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC-HHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 22355445567777777888988888876433 22 2237888888887 454444444443
No 288
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.58 E-value=0.00016 Score=75.16 Aligned_cols=95 Identities=27% Similarity=0.442 Sum_probs=58.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC----------CCeeeec-hhhHHHHHhhh-------------hhHHHHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAG----------VPFFSCA-ASEFVELFVGV-------------GASRVRDLFEKAK 358 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g----------~pfi~vs-~se~~~~~~G~-------------~~~~vr~lF~~A~ 358 (606)
.+++|.||+|+|||++.+++++... .++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5799999999999999999998763 2222222 12332111110 1122345677777
Q ss_pred cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 359 SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 359 ~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
...|.||++||+.. ...+..++..+. .+..+|++|+.++
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~ 230 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRD 230 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhH
Confidence 78999999999632 123444555543 2457888888643
No 289
>PRK08118 topology modulation protein; Reviewed
Probab=97.57 E-value=0.00012 Score=70.58 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=30.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s 336 (606)
-|+++||||+||||+|+.|++.++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 489999999999999999999999999887753
No 290
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.57 E-value=0.0019 Score=67.86 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=48.1
Q ss_pred CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcccc----------------
Q 007367 360 KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSA---------------- 423 (606)
Q Consensus 360 ~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~a---------------- 423 (606)
..+-||||||+|++.+ + .+.++|..+..+-...++++|.+.++. .|..+
T Consensus 171 ~~~iViiIDdLDR~~~----------~----~i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP----------E----EIVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCCc----------H----HHHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 3467999999999832 2 233444444444344677888777642 11111
Q ss_pred -ccCCCccccccccCCCCHHHHHHHHHHHh
Q 007367 424 -LLRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (606)
Q Consensus 424 -LlRpgRFd~~I~v~~Pd~~eR~~IL~~~l 452 (606)
|-. -|+..+.+|.|+..+...++...+
T Consensus 236 yLeK--iiq~~~~lP~~~~~~~~~~~~~~~ 263 (325)
T PF07693_consen 236 YLEK--IIQVPFSLPPPSPSDLERYLNELL 263 (325)
T ss_pred HHHh--hcCeEEEeCCCCHHHHHHHHHHHH
Confidence 222 466788999999988888887664
No 291
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.56 E-value=0.00039 Score=69.23 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=61.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH----HHHhhh-------------------hhHHHHH
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV----ELFVGV-------------------GASRVRD 352 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~----~~~~G~-------------------~~~~vr~ 352 (606)
.....-++++|+||+|||+++..+|.+. +.++++++..... ....+. ....+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQE 95 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHH
Confidence 3444558999999999999999998764 5677777553211 110000 0111222
Q ss_pred HHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 353 LFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 353 lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
+..... ..+++|+||-+..+........ .........+.+++..|..+....++.||.+...
T Consensus 96 ~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 96 TETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 222222 3478999999999853211110 0111222334444443444433445666666553
No 292
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.56 E-value=6.1e-05 Score=67.51 Aligned_cols=31 Identities=39% Similarity=0.766 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeech
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~ 335 (606)
|+|.|+||+||||+|+.+|+.+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988775543
No 293
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00041 Score=81.92 Aligned_cols=163 Identities=25% Similarity=0.323 Sum_probs=106.0
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeechhh
Q 007367 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAASE 337 (606)
Q Consensus 268 f~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs~se 337 (606)
++-++|. .-++++++++.|....+ ++-+|.|.||+|||.++.-+|+.. +..++.++...
T Consensus 185 ldPvigr--~deeirRvi~iL~Rrtk---------~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 185 LDPVIGR--HDEEIRRVIEILSRKTK---------NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCCccCC--chHHHHHHHHHHhccCC---------CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 5557776 22234555665543322 456999999999999999998865 23455555544
Q ss_pred HH--HHHhhhhhHHHHHHHHHHH-cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 007367 338 FV--ELFVGVGASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (606)
Q Consensus 338 ~~--~~~~G~~~~~vr~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaT 414 (606)
+. .++.|+.+.+++++.+.+. .+...||||||++.+...... .......| +|..+-. ++++-+|+||
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~n-lLkp~L~---rg~l~~IGat 323 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAAN-LLKPLLA---RGGLWCIGAT 323 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHH-hhHHHHh---cCCeEEEecc
Confidence 33 3466778889999999888 456679999999999653221 11222233 3343332 3448888887
Q ss_pred CCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcC
Q 007367 415 NRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG 454 (606)
Q Consensus 415 N~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~ 454 (606)
.... .-||++-| ||+ .+.++.|+.++-..||+.....
T Consensus 324 T~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 324 TLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 7332 34899999 996 5678888887766677654433
No 294
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.51 E-value=0.00044 Score=73.66 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=64.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH-H---hh------------hhhHHHHHHHHHHHcCCC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL-F---VG------------VGASRVRDLFEKAKSKAP 362 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~-~---~G------------~~~~~vr~lF~~A~~~aP 362 (606)
.+-++++||||||||+||-.++.+. +...++++..+-.+. + .| ..+..+..+-...+...+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV 134 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence 3457899999999999999876543 677777776432210 1 01 011122222233456778
Q ss_pred eEEEEccccchhhccCC-CCCCCC--hhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 363 CIVFIDEIDAVGRQRGA-GLGGGN--DEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 363 ~ILfIDEID~L~~~r~~-~~~~~~--~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
++|+||-+.++.++.+. +..+.. ....+.+.++|..+...-...++.+|.+..-
T Consensus 135 ~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQv 191 (325)
T cd00983 135 DLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQL 191 (325)
T ss_pred CEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 99999999999753211 111111 1122344555555554444556666666443
No 295
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.50 E-value=0.00028 Score=79.27 Aligned_cols=224 Identities=21% Similarity=0.300 Sum_probs=117.4
Q ss_pred ccccchHHHHHHHHHHHH--hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhh
Q 007367 270 DVAGADQAKLELQEVVDF--LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGA 347 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~--Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~ 347 (606)
.|.|.+.+|..+.-.+-- -+++..-. ..+---+|||+|.|||||+-+.|.+++-....++..--. ..-+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~kh--kvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKH--KVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCc--eeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeE
Confidence 377888888766533221 23332211 122234799999999999999999999776655542110 00111111
Q ss_pred HHH-----HHH------HHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHH---HH--HHHHHhccCCCCCcEEEE
Q 007367 348 SRV-----RDL------FEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQT---IN--QLLTEMDGFSGNSGVIVL 411 (606)
Q Consensus 348 ~~v-----r~l------F~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~---Ln--~LL~eld~~~~~~~ViVI 411 (606)
... +++ +-.|.++ |-+|||+|.+....-. .-++..+|. +. -+...+. ..+.||
T Consensus 525 ~v~KdPvtrEWTLEaGALVLADkG---vClIDEFDKMndqDRt---SIHEAMEQQSISISKAGIVtsLq-----ArctvI 593 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLADKG---VCLIDEFDKMNDQDRT---SIHEAMEQQSISISKAGIVTSLQ-----ARCTVI 593 (854)
T ss_pred EEeeCCccceeeeccCeEEEccCc---eEEeehhhhhcccccc---hHHHHHHhcchhhhhhhHHHHHH-----hhhhhh
Confidence 100 110 1112233 8899999999543211 011111110 00 1222222 245789
Q ss_pred EeeCCCC-------------CccccccCCCccccccccCC---CCHHHHHH--HHHHHhcCCCC----------------
Q 007367 412 AATNRPD-------------VLDSALLRPGRFDRQVTVDR---PDVAGRVK--ILQVHSRGKAL---------------- 457 (606)
Q Consensus 412 aaTN~p~-------------~LD~aLlRpgRFd~~I~v~~---Pd~~eR~~--IL~~~l~~~~l---------------- 457 (606)
+|.|... .|-+.+++ |||....+.- |-.+++.. ++..|.+..+-
T Consensus 594 AAanPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v 671 (854)
T KOG0477|consen 594 AAANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARV 671 (854)
T ss_pred eecCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCccccccccccc
Confidence 9999621 35566777 8887433321 22233322 22222211100
Q ss_pred ----------------------CCcccHHHHHHhC---------CC---CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 007367 458 ----------------------AKDVDFEKISRRT---------PG---FTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (606)
Q Consensus 458 ----------------------~~dvdl~~La~~t---------~G---~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~ 503 (606)
-.+.|.+.++... .| .+.+.|+.++..+...|...-++.++.+|+.
T Consensus 672 ~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~ 751 (854)
T KOG0477|consen 672 EPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVD 751 (854)
T ss_pred ccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHH
Confidence 1222333333221 12 3678899999888888888888899999999
Q ss_pred HHHHHHHc
Q 007367 504 DALERIIA 511 (606)
Q Consensus 504 ~Al~ri~~ 511 (606)
.|+.-++.
T Consensus 752 ~AI~v~ld 759 (854)
T KOG0477|consen 752 MAIRVMLD 759 (854)
T ss_pred HHHHHHHH
Confidence 99876653
No 296
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.49 E-value=5.2e-05 Score=74.63 Aligned_cols=120 Identities=19% Similarity=0.269 Sum_probs=58.4
Q ss_pred EEEEcCCCChHHHHHHHH-HH---hcCCCeeeechhhHH-HHHh---hhh----------------hHHHHHHHHHHHcC
Q 007367 305 CLLVGPPGTGKTLLARAV-AG---EAGVPFFSCAASEFV-ELFV---GVG----------------ASRVRDLFEKAKSK 360 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAI-A~---e~g~pfi~vs~se~~-~~~~---G~~----------------~~~vr~lF~~A~~~ 360 (606)
.+++|.||+|||+.|-.. .. ..|.+++. +...+. +... +.. ........ ...
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 78 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWR---KLP 78 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHT---TSG
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhc---ccC
Confidence 589999999999987555 33 23666554 433221 1000 000 01122111 111
Q ss_pred CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCC
Q 007367 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 439 (606)
Q Consensus 361 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~P 439 (606)
..++|+|||++.+.+.|... .......+ +++.+ ....++-||.+|..+..||+.+++ +.+.++.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-----T----HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccc----cccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 45799999999998876431 01112222 23332 234567899999999999999987 77777766544
No 297
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.48 E-value=0.0005 Score=68.24 Aligned_cols=103 Identities=24% Similarity=0.399 Sum_probs=59.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCe-------------eeechhhHHH----HHhhhhhHHHHHHHHHHHcC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA-----GVPF-------------FSCAASEFVE----LFVGVGASRVRDLFEKAKSK 360 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~-----g~pf-------------i~vs~se~~~----~~~G~~~~~vr~lF~~A~~~ 360 (606)
+.++|+||+|+|||++.|.++... |.++ ..++..+-.. .+. ....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccCC
Confidence 468999999999999999998633 4322 1111111110 111 1124567777777655
Q ss_pred CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 361 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
.|.+|++||.-.-. ...........++..+.. .+..+|.+|+..+.
T Consensus 105 ~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~ 150 (199)
T cd03283 105 EPVLFLLDEIFKGT---------NSRERQAASAAVLKFLKN----KNTIGIISTHDLEL 150 (199)
T ss_pred CCeEEEEecccCCC---------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHH
Confidence 78999999974321 112223334455665542 24567777787664
No 298
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.46 E-value=0.0036 Score=69.43 Aligned_cols=191 Identities=19% Similarity=0.269 Sum_probs=98.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH-------HHh--------hh-----hhHHHHHHHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE-------LFV--------GV-----GASRVRDLFEK 356 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~-------~~~--------G~-----~~~~vr~lF~~ 356 (606)
..|..++|+|++|+|||+++..+|..+ |..+..+++..+.. .+. +. ....+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 457889999999999999999998765 55566565543311 110 00 11223445555
Q ss_pred HHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccc---
Q 007367 357 AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQ--- 433 (606)
Q Consensus 357 A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~--- 433 (606)
+... .+|+||....+.. .+..+.+|....+-......++|+-++...+.++.+ + +|...
T Consensus 173 ~~~~--DvVIIDTAGr~~~------------d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a--~--~F~~~l~i 234 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHAL------------EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA--K--AFHEAVGI 234 (437)
T ss_pred hhcC--CEEEEECCCcccc------------hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH--H--HHHhcCCC
Confidence 5444 6999999866521 122333333322222333445555555543333321 1 23321
Q ss_pred --cccCCCCHHHHH-HHHHHHh-cC---------CCC--CCcccHHHHHHhCCCCCHHHHHHHHHHHHHH---------H
Q 007367 434 --VTVDRPDVAGRV-KILQVHS-RG---------KAL--AKDVDFEKISRRTPGFTGADLQNLMNEAAIL---------A 489 (606)
Q Consensus 434 --I~v~~Pd~~eR~-~IL~~~l-~~---------~~l--~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~---------A 489 (606)
+-+...|...|. .+|.... .+ ..+ -...+.+.++.+.-|+ .|+..+++.|... +
T Consensus 235 ~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~~ 312 (437)
T PRK00771 235 GGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKDV 312 (437)
T ss_pred CEEEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHHH
Confidence 222333433332 2222211 11 111 1123457777777654 4777777655432 1
Q ss_pred HHhCCCCCCHHHHHHHHHHHH
Q 007367 490 ARRDLKEISKDEISDALERII 510 (606)
Q Consensus 490 ~rr~~~~It~edl~~Al~ri~ 510 (606)
.+-.....+.+|+.+.++.+.
T Consensus 313 ~~~~~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 313 EKMMKGKFTLKDMYKQLEAMN 333 (437)
T ss_pred HHHHcCCcCHHHHHHHHHHHH
Confidence 111235688999998887654
No 299
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.46 E-value=0.001 Score=58.91 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
++++++||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888887655
No 300
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.00033 Score=75.92 Aligned_cols=110 Identities=21% Similarity=0.366 Sum_probs=63.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----C-CCeeeechhhH-------HHH---Hhhh------hhHHHHHHHHHHHc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA----G-VPFFSCAASEF-------VEL---FVGV------GASRVRDLFEKAKS 359 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~----g-~pfi~vs~se~-------~~~---~~G~------~~~~vr~lF~~A~~ 359 (606)
....++|+||+|+|||+++..||..+ | ..+..+.+..+ ... ..|. ....+...+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 34578999999999999999998763 3 23444443332 111 1111 111233333333
Q ss_pred CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC-CCcEEEEEeeCCCCCcccccc
Q 007367 360 KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-NSGVIVLAATNRPDVLDSALL 425 (606)
Q Consensus 360 ~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~-~~~ViVIaaTN~p~~LD~aLl 425 (606)
...++|+||...... .+..+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 214 ~~~DlVLIDTaG~~~-------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ-------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred cCCCEEEEcCCCCCc-------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 334799999986431 12335555555544332 345788888888887765544
No 301
>PRK10536 hypothetical protein; Provisional
Probab=97.45 E-value=0.00039 Score=71.64 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-++++||+|||||+||.+++.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999885
No 302
>PRK07261 topology modulation protein; Provisional
Probab=97.42 E-value=0.0002 Score=69.19 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=29.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
++++|+||+||||||+.++...+.+++..+.-.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 7999999999999999999999999887765433
No 303
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.41 E-value=0.00046 Score=63.47 Aligned_cols=36 Identities=33% Similarity=0.583 Sum_probs=28.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~ 342 (606)
++++||||+|||++|+.++...+ ...++..++....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 68999999999999999999998 4445666655433
No 304
>PRK14532 adenylate kinase; Provisional
Probab=97.38 E-value=0.00025 Score=68.91 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
.++|.||||+|||++|+.+|...|.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 55555543
No 305
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.001 Score=72.56 Aligned_cols=111 Identities=13% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-------CCCeeeechhhHH-------HHHhh---------hhhHHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCAASEFV-------ELFVG---------VGASRVRDLFEKA 357 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~-------g~pfi~vs~se~~-------~~~~G---------~~~~~vr~lF~~A 357 (606)
.|+.++|+||+|+|||+++..+|..+ +..+..+++..+. ..|.. .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46789999999999999999998754 2334333333221 11111 1122333334433
Q ss_pred HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCC-CcEEEEEeeCCCCCcccccc
Q 007367 358 KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN-SGVIVLAATNRPDVLDSALL 425 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~-~~ViVIaaTN~p~~LD~aLl 425 (606)
....+|+||++..... + ...+..+...++..... ..++|+.+|.....+...+.
T Consensus 253 --~~~DlVLIDTaGr~~~---------~---~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK---------D---FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred --CCCCEEEEcCCCCCcc---------C---HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 3457999999977621 1 12255555555544333 45788888877766664443
No 306
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.37 E-value=0.00063 Score=67.85 Aligned_cols=116 Identities=23% Similarity=0.234 Sum_probs=65.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---C------CCeeeechhhH------HHHHhh-----------------hh
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---G------VPFFSCAASEF------VELFVG-----------------VG 346 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g------~pfi~vs~se~------~~~~~G-----------------~~ 346 (606)
.....-+.|+||||+|||+++..++... + ..+++++..+- ...... ..
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence 4444568999999999999999997653 2 55666665431 110000 01
Q ss_pred hHHHHHHHHHH----HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 347 ASRVRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 347 ~~~vr~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
...+...++.. ....+++|+||-+..+......+ .+...+..+.+.+++..|..+....++.||.+..
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 11122222222 24577899999999886532110 0012344456667777666664455666666543
No 307
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.37 E-value=0.00087 Score=67.24 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=65.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhh------HHHHHh------h-------------
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE------FVELFV------G------------- 344 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se------~~~~~~------G------------- 344 (606)
.....-+.|+||||+|||+++..++... +...++++..+ +..... .
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 4444568999999999999999997543 24666666543 111000 0
Q ss_pred --hhhHHHHHHHHHHHcC-CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 345 --VGASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 345 --~~~~~vr~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
.....+..+-...... .+.+|+||-+..+....-.+ .....+..+.+.+++..|..+....++.||.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0011112222223344 78999999999875421110 0011344556667777766554445566666543
No 308
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.35 E-value=0.002 Score=66.26 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGV 328 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~ 328 (606)
.-++|.||+|+|||+|++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 35899999999999999999987643
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.34 E-value=0.0011 Score=66.48 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=55.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhh----HHHH----------Hhhh--------------
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASE----FVEL----------FVGV-------------- 345 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se----~~~~----------~~G~-------------- 345 (606)
|......+|+.||||||||+++..++.+. |-+.++++..+ +.+. +...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44455679999999999999999875432 77777776532 2111 1000
Q ss_pred -----hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc
Q 007367 346 -----GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (606)
Q Consensus 346 -----~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld 400 (606)
...-...+-+..+...+.+++||-+..+. .. .........+..|...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~-----~~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY-----DDPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS-----SSGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc-----CCHHHHHHHHHHHHHHHH
Confidence 01112233334445567899999999982 21 123334455666666654
No 310
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.33 E-value=0.00055 Score=83.32 Aligned_cols=133 Identities=29% Similarity=0.378 Sum_probs=90.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH--Hhh-----h--hhHHHHH--HHHHHHcCCCeEEEEccc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL--FVG-----V--GASRVRD--LFEKAKSKAPCIVFIDEI 370 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~--~~G-----~--~~~~vr~--lF~~A~~~aP~ILfIDEI 370 (606)
.+++||.|.||+|||.|..++|++.|-.++.++.++-.+. ..| + |+-+.++ ++...+.+ .-+++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--GWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--CEEEeehh
Confidence 4679999999999999999999999999999998754321 111 1 2222222 33334444 37899999
Q ss_pred cchhhccCCCCCCCChhHHHHHHHHHHHhcc------------CCCCCcEEEEEeeCCCC------CccccccCCCcccc
Q 007367 371 DAVGRQRGAGLGGGNDEREQTINQLLTEMDG------------FSGNSGVIVLAATNRPD------VLDSALLRPGRFDR 432 (606)
Q Consensus 371 D~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~------------~~~~~~ViVIaaTN~p~------~LD~aLlRpgRFd~ 432 (606)
..- .+.++..|-..+|. +.-+.++.|+||-|.-+ .|+..++. || .
T Consensus 1621 NLa--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-s 1683 (4600)
T COG5271 1621 NLA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-S 1683 (4600)
T ss_pred hhh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-h
Confidence 643 23344333333332 23356789999988643 48899998 89 5
Q ss_pred ccccCCCCHHHHHHHHHHHhc
Q 007367 433 QVTVDRPDVAGRVKILQVHSR 453 (606)
Q Consensus 433 ~I~v~~Pd~~eR~~IL~~~l~ 453 (606)
+|.++..+.++...|......
T Consensus 1684 vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1684 VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred eEEecccccchHHHHHHhhCC
Confidence 788888888888877776554
No 311
>PRK06762 hypothetical protein; Provisional
Probab=97.33 E-value=0.00078 Score=64.08 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=33.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
|.-++|+|+||+|||++|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5678999999999999999999998666777777666543
No 312
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.31 E-value=0.00074 Score=73.41 Aligned_cols=72 Identities=26% Similarity=0.420 Sum_probs=43.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCC-----Ceeeechhh-------HHHHHhh---------hhhHHHH---HHHHHHH--
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGV-----PFFSCAASE-------FVELFVG---------VGASRVR---DLFEKAK-- 358 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~-----pfi~vs~se-------~~~~~~G---------~~~~~vr---~lF~~A~-- 358 (606)
.+|+||||+|||+|++.|++.... ..+.+-..+ +.....| ....+++ .+++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999986632 222222222 1111111 1122222 2333333
Q ss_pred --cCCCeEEEEccccchhhc
Q 007367 359 --SKAPCIVFIDEIDAVGRQ 376 (606)
Q Consensus 359 --~~aP~ILfIDEID~L~~~ 376 (606)
.+...+||||||+++...
T Consensus 252 ~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHcCCCEEEEEEChHHHHHH
Confidence 356689999999999764
No 313
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.30 E-value=0.00097 Score=61.60 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHHH-HhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 270 DVAGADQAKLELQEVVD-FLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~-~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
+|.|++-+++.+.+.+. ++.++. .+.|--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 58999999988888666 465532 2335556699999999999999999975
No 314
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.30 E-value=0.00092 Score=66.14 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=41.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----Ceeeech-hhHHH---------HHhhhhhHHHHHHHHHHHcCCCeEEEEcc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGV----PFFSCAA-SEFVE---------LFVGVGASRVRDLFEKAKSKAPCIVFIDE 369 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~----pfi~vs~-se~~~---------~~~G~~~~~vr~lF~~A~~~aP~ILfIDE 369 (606)
-++++||+|+|||++++++++.... .++.+.. .++.. ..++.......+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887642 2222211 11110 01121223345556666777899999999
Q ss_pred c
Q 007367 370 I 370 (606)
Q Consensus 370 I 370 (606)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 315
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.29 E-value=0.0011 Score=68.17 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeech
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~ 335 (606)
|.....-++|.|+||+|||+++..++... |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 34445568999999999999999886653 667766665
No 316
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.29 E-value=0.002 Score=62.51 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..-.++|+||+||||++|.|++|.-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3445899999999999999999983
No 317
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.00073 Score=68.97 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-+-|.||+|||||||.+.||+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999983
No 318
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.27 E-value=0.0024 Score=64.89 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=29.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeechhh
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAASE 337 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~se 337 (606)
|......+|++||||+|||+++..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4455567999999999999999876543 366777776543
No 319
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.27 E-value=0.00028 Score=72.66 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=62.3
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---eeeec-hhh
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP---FFSCA-ASE 337 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p---fi~vs-~se 337 (606)
.....+++++.-.....+++.+++...- +..++++++|++|+|||++++++..+.... ++.+. ..+
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred ccccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 3456789998877776666666555421 113479999999999999999999876433 33222 111
Q ss_pred HHHH------Hhh-hhhHHHHHHHHHHHcCCCeEEEEccccc
Q 007367 338 FVEL------FVG-VGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 338 ~~~~------~~G-~~~~~vr~lF~~A~~~aP~ILfIDEID~ 372 (606)
+.-. +.. .......+++..+....|++|+|+|+-.
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1100 000 1334567788888889999999999954
No 320
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.25 E-value=0.00084 Score=64.19 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=60.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeechhh--------HHHHHhhh-----hhHHHHHHHHHHHcCCCeEE
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASE--------FVELFVGV-----GASRVRDLFEKAKSKAPCIV 365 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~se--------~~~~~~G~-----~~~~vr~lF~~A~~~aP~IL 365 (606)
....+.|.||+|+|||+|.+.+++.... =-+.++..+ .....++. +..+.+-.+..+-...|.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 3446899999999999999999986521 001122111 11110110 12234445666667889999
Q ss_pred EEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 366 FIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 366 fIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
++||-..- -+....+.+.+++.++.. . +..+|.+|++.+.
T Consensus 105 llDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~ 144 (163)
T cd03216 105 ILDEPTAA----------LTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLDE 144 (163)
T ss_pred EEECCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHH
Confidence 99998542 234455566666666531 2 3456666776553
No 321
>PRK05973 replicative DNA helicase; Provisional
Probab=97.23 E-value=0.003 Score=64.51 Aligned_cols=38 Identities=37% Similarity=0.293 Sum_probs=28.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~s 336 (606)
.....-+||.|+||+|||+++-.++.+. |.++++++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 3344468999999999999998876644 7777776654
No 322
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.22 E-value=0.00049 Score=66.61 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.++|+|+||+||||+++.+..++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999998877
No 323
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.22 E-value=0.00067 Score=74.83 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGV 328 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~ 328 (606)
-+|||.|.|||-|+-|.|-+-.-+-+
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvsPI 390 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVSPI 390 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcCce
Confidence 37999999999999999998765543
No 324
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.22 E-value=0.00068 Score=67.05 Aligned_cols=97 Identities=23% Similarity=0.350 Sum_probs=51.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH----HHhhhhhHHHHHHHHHHH---------cCCCeEEEE
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----LFVGVGASRVRDLFEKAK---------SKAPCIVFI 367 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~----~~~G~~~~~vr~lF~~A~---------~~aP~ILfI 367 (606)
..+|.|+||||||++++.+...+ +..++.+..+.-.. ...+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 47899999999999999886533 66666665532211 111222223333222211 122369999
Q ss_pred ccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 368 DEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 368 DEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
||+..+.. ..+..|+..... .+.++++++-.+.
T Consensus 100 DEasmv~~--------------~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVDS--------------RQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-BH--------------HHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccCH--------------HHHHHHHHHHHh--cCCEEEEECCcch
Confidence 99988732 345566666553 2446777775553
No 325
>PRK14974 cell division protein FtsY; Provisional
Probab=97.22 E-value=0.0028 Score=68.03 Aligned_cols=73 Identities=32% Similarity=0.354 Sum_probs=45.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH-------HHHh---hh----------hhHHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-------ELFV---GV----------GASRVRDLFEKA 357 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~-------~~~~---G~----------~~~~vr~lF~~A 357 (606)
.|.-++|+|++|+|||+++..+|..+ +..+..+++..+. ..+. |. ....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 36789999999999999888887654 5555555554221 1111 10 012233444455
Q ss_pred HcCCCeEEEEccccch
Q 007367 358 KSKAPCIVFIDEIDAV 373 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L 373 (606)
+....++|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555679999999776
No 326
>PRK09354 recA recombinase A; Provisional
Probab=97.21 E-value=0.002 Score=69.32 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=61.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeechhhHHHH-Hh---h------------hhhHHHHHHHHHHHcC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAASEFVEL-FV---G------------VGASRVRDLFEKAKSK 360 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~se~~~~-~~---G------------~~~~~vr~lF~~A~~~ 360 (606)
...+-++|+||+|||||+|+-.++.+ .|...++++..+-.+. +. | ..+..+..+-...+..
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~ 137 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSG 137 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcC
Confidence 33345789999999999999987554 3667777776542211 10 0 0111222222334556
Q ss_pred CCeEEEEccccchhhccCC-CCCCC--ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 007367 361 APCIVFIDEIDAVGRQRGA-GLGGG--NDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (606)
Q Consensus 361 aP~ILfIDEID~L~~~r~~-~~~~~--~~e~~~~Ln~LL~eld~~~~~~~ViVIaaT 414 (606)
.+.+|+||-+-++.++.+- +..+. .....+.+.+.|..+...-...++.+|.+.
T Consensus 138 ~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 138 AVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred CCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 7899999999998753111 10010 112223444444444433334556666653
No 327
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.20 E-value=0.00036 Score=78.94 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=42.2
Q ss_pred ccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCeeee
Q 007367 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSC 333 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi~v 333 (606)
.-|+|+.|++++++.+.+.+.. ... ++ ...+.++|.||||+|||+||+.|++.+ ..|++.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~g------l~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQG------LE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHh------cC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 3588999999998777665521 111 11 123478999999999999999999865 2344444
No 328
>PRK13948 shikimate kinase; Provisional
Probab=97.19 E-value=0.0014 Score=64.42 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
..+..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34678999999999999999999999999998665
No 329
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.17 E-value=0.0023 Score=64.49 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeech
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~ 335 (606)
|.....-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 45555578999999999999998876543 778777764
No 330
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.17 E-value=0.0073 Score=72.20 Aligned_cols=155 Identities=17% Similarity=0.271 Sum_probs=84.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechh--h-----HHHHHhhh------h-----------------hHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS--E-----FVELFVGV------G-----------------ASRVRD 352 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s--e-----~~~~~~G~------~-----------------~~~vr~ 352 (606)
+-++++||+|.|||+++...+...+ ++..++.. + |...+... . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3589999999999999999887766 65555442 1 11110000 0 011223
Q ss_pred HHHHHHc-CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc-ccccCCCcc
Q 007367 353 LFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD-SALLRPGRF 430 (606)
Q Consensus 353 lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD-~aLlRpgRF 430 (606)
++..... ..|.+|+|||+|.+. +......+..|+..+ ..++.+|.++.....++ ..+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~--- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR--- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc---
Confidence 3333333 678999999999882 223334455555433 22333433454321121 111111
Q ss_pred ccccccC----CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHH
Q 007367 431 DRQVTVD----RPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQ 479 (606)
Q Consensus 431 d~~I~v~----~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~ 479 (606)
+..+.+. ..+.++-.+++...+.. .+ ...+...+.+.|.|+ +.-+.
T Consensus 174 ~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gw-p~~l~ 223 (903)
T PRK04841 174 DQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGW-ATALQ 223 (903)
T ss_pred CcceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCCh-HHHHH
Confidence 1233444 55778888888765432 22 344578888999985 43444
No 331
>PRK04296 thymidine kinase; Provisional
Probab=97.16 E-value=0.001 Score=65.36 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=41.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeeech--h--hHHH---HHhhhh-----hHHHHHHHHHHH--cCCCeEEE
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA--S--EFVE---LFVGVG-----ASRVRDLFEKAK--SKAPCIVF 366 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~--s--e~~~---~~~G~~-----~~~vr~lF~~A~--~~aP~ILf 366 (606)
-.+++||+|+|||+++..++.++ +..++.+.. . .... ...|.. .....++++.+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 46899999999999998887755 555555532 1 1000 011110 112334444433 34567999
Q ss_pred Eccccch
Q 007367 367 IDEIDAV 373 (606)
Q Consensus 367 IDEID~L 373 (606)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999766
No 332
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0012 Score=64.22 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
+.++|+|++|+|||++.|++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999998654
No 333
>PRK13947 shikimate kinase; Provisional
Probab=97.16 E-value=0.00039 Score=66.31 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999998654
No 334
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.14 E-value=0.0035 Score=62.88 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=57.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-----hcCCCeee--------------echhhHHHHHhhhhhHHHHHHHH-HHHcCC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAG-----EAGVPFFS--------------CAASEFVELFVGVGASRVRDLFE-KAKSKA 361 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~-----e~g~pfi~--------------vs~se~~~~~~G~~~~~vr~lF~-~A~~~a 361 (606)
++.++|+||.|+|||++.|.++. ..|..+.. +...+-...........++.+-. .+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 36689999999999999999973 23432211 11111111111111222222211 122356
Q ss_pred CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcccc
Q 007367 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSA 423 (606)
Q Consensus 362 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~a 423 (606)
|++++|||+..-. ...+....+..++..+-. .......+|.+|+..+.+...
T Consensus 109 ~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 109 RSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhh
Confidence 7899999986531 112233444455555532 111234677788877654433
No 335
>PRK13946 shikimate kinase; Provisional
Probab=97.14 E-value=0.0015 Score=63.67 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeech
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~ 335 (606)
.++.|+|.|.+|+|||++++.+|+.+|.+|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 35679999999999999999999999999987663
No 336
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.13 E-value=0.0051 Score=61.13 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi 331 (606)
+.-++++|.||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 456899999999999999999999987653
No 337
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.11 E-value=0.00015 Score=63.54 Aligned_cols=66 Identities=29% Similarity=0.426 Sum_probs=36.6
Q ss_pred CCCCcccchHHHHHHHHcCCccEEEEEeCCcE----------EEEEEeCCce----EEEEcCCC----hHHHHHHHhCCc
Q 007367 137 LPEGSQWRYSEFLNAVKKGKVERVRFSKDGSA----------LQLTAVDGRR----ATVIVPND----PDLIDILAMNGV 198 (606)
Q Consensus 137 ~~~~~~~~y~~f~~~~~~~~v~~v~~~~~~~~----------~~~~~~~~~~----~~~~~p~~----~~~~~~l~~~~~ 198 (606)
..++.+++||+|+++|++|+|++|.+.++... +.....++.. .....+.+ +.|.+.+.++||
T Consensus 24 ~~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~v 103 (110)
T PF06480_consen 24 NSQTKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYTTFYTPSIPSVDSFDEFLIEALVEKGV 103 (110)
T ss_dssp --SSEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT--EEEE-S-HHHHHHHHHHHHHHTT-
T ss_pred cCCCcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccEEEEEcCCCCCHHHHHHHHHHHHHCCC
Confidence 34567899999999999999999999976544 1122223322 12222333 346777778888
Q ss_pred eeee
Q 007367 199 DISV 202 (606)
Q Consensus 199 ~~~~ 202 (606)
++..
T Consensus 104 ~~~~ 107 (110)
T PF06480_consen 104 KYES 107 (110)
T ss_dssp -TTT
T ss_pred ccce
Confidence 7654
No 338
>PRK03839 putative kinase; Provisional
Probab=97.09 E-value=0.00043 Score=66.87 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
.|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3799999999999999999999999997654
No 339
>PRK00625 shikimate kinase; Provisional
Probab=97.08 E-value=0.0005 Score=66.88 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
.|+|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 340
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00089 Score=63.42 Aligned_cols=31 Identities=35% Similarity=0.689 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
++|++|-||||||+++..||...+.+++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 6899999999999999999999999888764
No 341
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.07 E-value=0.0035 Score=64.00 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=29.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
|+|+|+||+|||++|+.++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 6899999999999999999876 56777777655533
No 342
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0039 Score=67.69 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=66.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--CCCeeeechhhHHHHHhhh--------------hhHHHHHHHHHHHcCCCeEEE
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA--GVPFFSCAASEFVELFVGV--------------GASRVRDLFEKAKSKAPCIVF 366 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~--g~pfi~vs~se~~~~~~G~--------------~~~~vr~lF~~A~~~aP~ILf 366 (606)
.-+||-|.||.|||||.-.++..+ ..+++|+++.+-....... .+-++.+++.......|.+++
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvV 173 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVV 173 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEE
Confidence 357888999999999888776654 2389999987654432211 345678889999999999999
Q ss_pred EccccchhhccCCCCCCCChhHHHHHHHHHHH
Q 007367 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (606)
Q Consensus 367 IDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e 398 (606)
||-|..+....-.+..++-....+.-++|...
T Consensus 174 IDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 174 IDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 99999997655333333334444444455444
No 343
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.0031 Score=63.86 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=45.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--------CCCeeeechh-hHHHHHhhh-------------hhHHHHHHHHHHHcCC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA--------GVPFFSCAAS-EFVELFVGV-------------GASRVRDLFEKAKSKA 361 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~--------g~pfi~vs~s-e~~~~~~G~-------------~~~~vr~lF~~A~~~a 361 (606)
+.||.||||||||++.|-+|+-+ +..+..++-+ ++..-..|. ..-+-..++...+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 57999999999999999998854 2334444332 222211111 1222344667778899
Q ss_pred CeEEEEccccch
Q 007367 362 PCIVFIDEIDAV 373 (606)
Q Consensus 362 P~ILfIDEID~L 373 (606)
|.|+++|||...
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999999654
No 344
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.07 E-value=0.00051 Score=63.98 Aligned_cols=31 Identities=35% Similarity=0.621 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
+++|+|+||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3799999999999999999999999988554
No 345
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.06 E-value=0.0054 Score=61.43 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=29.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~s 336 (606)
|......+++.|+||+|||+++..++.+. |.+.++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34445578999999999999999887543 6677666654
No 346
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.05 E-value=0.00049 Score=72.59 Aligned_cols=69 Identities=26% Similarity=0.314 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeech-hhHH-------HHHhhhhhHHHHHHHHHHHcCCCeEEEEcc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAA-SEFV-------ELFVGVGASRVRDLFEKAKSKAPCIVFIDE 369 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~-se~~-------~~~~G~~~~~vr~lF~~A~~~aP~ILfIDE 369 (606)
+++|++|++|+|||++++++.+.. +..++.+.- .++. ............+++..+....|+.|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 479999999999999999998875 223333221 1111 001111222567888888899999999999
Q ss_pred cc
Q 007367 370 ID 371 (606)
Q Consensus 370 ID 371 (606)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 93
No 347
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.04 E-value=0.0026 Score=63.14 Aligned_cols=108 Identities=29% Similarity=0.408 Sum_probs=57.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH-------HHHH---hhh----------hhHHHHHHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF-------VELF---VGV----------GASRVRDLFEKAK 358 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~-------~~~~---~G~----------~~~~vr~lF~~A~ 358 (606)
|+-++|+||+|+|||+.+-.+|..+ +..+--+++..+ ...| .+. .....++.++..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6678999999999999888887654 443333333221 1111 111 1123445566666
Q ss_pred cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 359 SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 359 ~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
...-.+|+||=..... .+.+....+..++..+ .....++|+.++-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~~---------~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP---------RDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSS---------THHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcch---------hhHHHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 5555799999875431 1122223333444444 3334456666666655555
No 348
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0079 Score=66.20 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=61.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhHHH-------HHh---hh---hhHHHHHHHHHHHcCCCe
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFVE-------LFV---GV---GASRVRDLFEKAKSKAPC 363 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~~~-------~~~---G~---~~~~vr~lF~~A~~~aP~ 363 (606)
.+.-++|.||+|+|||+++..+|.+. |..+..+++..+.. .|. +. ....+.++.+.+.....+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 34568999999999999999998754 44454455443221 111 11 112233444444445567
Q ss_pred EEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC---CCCCcEEEEEeeCCCCCcccccc
Q 007367 364 IVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF---SGNSGVIVLAATNRPDVLDSALL 425 (606)
Q Consensus 364 ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~---~~~~~ViVIaaTN~p~~LD~aLl 425 (606)
+|+||=...... +. ..+..|...++.. .....++|+.+|...+.+...+.
T Consensus 302 ~VLIDTaGr~~r---------d~---~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 302 LILIDTAGYSHR---------NL---EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEEeCCCCCcc---------CH---HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 899986433211 11 2333443333322 22345777777777665554443
No 349
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.04 E-value=0.00075 Score=65.95 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=44.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeechh-hHHH---HH----------hhhhhHHHHHHHHHHHcCCCeEE
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAAS-EFVE---LF----------VGVGASRVRDLFEKAKSKAPCIV 365 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~s-e~~~---~~----------~G~~~~~vr~lF~~A~~~aP~IL 365 (606)
...++|.||+|+|||++++++++.... ..+.+... ++.- .+ .+.......++++.+....|+++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 346899999999999999999986531 12222110 1100 00 01112345667777778889999
Q ss_pred EEcccc
Q 007367 366 FIDEID 371 (606)
Q Consensus 366 fIDEID 371 (606)
+++|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999993
No 350
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.03 E-value=0.0021 Score=68.24 Aligned_cols=114 Identities=22% Similarity=0.209 Sum_probs=64.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhh-H-----HHHH--hhh---------------h
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE-F-----VELF--VGV---------------G 346 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se-~-----~~~~--~G~---------------~ 346 (606)
+....-+.|+||||+|||.++..++-.. +...++++..+ | .+.. .+. .
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 3344457899999999999998876422 34667776543 1 1100 000 0
Q ss_pred ----hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 347 ----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 347 ----~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
...+..+-.......+.+|+||-|-.+....-.+ .+...++++.+.+++..|..+....++.|+.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 0111222222334567899999999886532111 12233445567777776666654555555555
No 351
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.02 E-value=0.0058 Score=59.28 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=55.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH-Hhhh----------------hhHHHHHHHHHHHcCCCeEEE
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGV----------------GASRVRDLFEKAKSKAPCIVF 366 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~-~~G~----------------~~~~vr~lF~~A~~~aP~ILf 366 (606)
-+|+.|+||+|||++|..++.+.+.+++++........ +... ....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 47999999999999999999998888777765432211 1000 011233333321 12356899
Q ss_pred EccccchhhccCCCCCCCChhHHHHHHHHHHHhcc
Q 007367 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (606)
Q Consensus 367 IDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~ 401 (606)
||-+..+..+.-.. .........+..|+..+..
T Consensus 82 ID~Lt~~~~n~l~~--~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE--EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc--cchHHHHHHHHHHHHHHHc
Confidence 99999886543210 0002223445556666653
No 352
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.01 E-value=0.0029 Score=66.70 Aligned_cols=116 Identities=18% Similarity=0.224 Sum_probs=63.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhh-H-----HHHH--hhhhh--------------
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE-F-----VELF--VGVGA-------------- 347 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se-~-----~~~~--~G~~~-------------- 347 (606)
.....-++++||||+|||+++-.+|..+ +...++++..+ | .+.. .+...
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCC
Confidence 4445567899999999999999987653 23677777654 1 1100 01000
Q ss_pred -----HHHHHHHHHHHcC--CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 348 -----SRVRDLFEKAKSK--APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 348 -----~~vr~lF~~A~~~--aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
..+..+.+..... .+.+|+||-|-.+....-.+ .+...++++.+++++..+..+....++.|+.+..
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~-~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG-RGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC-chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0112233333333 36799999998875432111 1112234455666666665554455566666543
No 353
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.01 E-value=0.002 Score=73.36 Aligned_cols=26 Identities=42% Similarity=0.625 Sum_probs=22.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~ 324 (606)
.++...+|+.||+|||||+|.|+||+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34455799999999999999999998
No 354
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.00 E-value=0.00078 Score=65.00 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=32.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
+-++|+|+||+|||++|+.++.+.+.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 45899999999999999999999988888777665544
No 355
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.99 E-value=0.0053 Score=63.88 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=95.6
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHH
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASR 349 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~ 349 (606)
|++--+++.+.+.++...|..|. .++||.|..|+||++++|..|.-++..++.+....-.+ ..+-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 57778889999999888887764 36899999999999999999999999998887543111 1122345
Q ss_pred HHHHHHHHH-cCCCeEEEEccccchhhc----------cCC-CCCCCChhHHHHHHHHHHHhccCC--C-----------
Q 007367 350 VRDLFEKAK-SKAPCIVFIDEIDAVGRQ----------RGA-GLGGGNDEREQTINQLLTEMDGFS--G----------- 404 (606)
Q Consensus 350 vr~lF~~A~-~~aP~ILfIDEID~L~~~----------r~~-~~~~~~~e~~~~Ln~LL~eld~~~--~----------- 404 (606)
++.++.+|- ++.|.+++|+|-+-.-.. .|. ..--..+|.+..+..+-....... .
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~ 156 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIE 156 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHH
Confidence 666666665 456888888875433110 011 011134556666666554433211 0
Q ss_pred --CCcEEEEEeeCCCC-Cc------cccccCCCccccccccCCCCHHHHHHHHHHHhcCC
Q 007367 405 --NSGVIVLAATNRPD-VL------DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK 455 (606)
Q Consensus 405 --~~~ViVIaaTN~p~-~L------D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~ 455 (606)
..++-||.+-+... .+ -|+|.. +..+..+..-+.+....+-..++++.
T Consensus 157 rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~---~ctIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 157 RVRKNLHIVLCMSPVGPNFRDRCRSFPALVN---CCTIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp HHCCCEEEEEEESTTTTCCCHHHHHHCCHHH---HSEEEEEES--HHHHHHHHHHHCCHH
T ss_pred HHHhheeEEEEECCCCchHHHHHHhCcchhc---ccEEEeCCcCCHHHHHHHHHHHHHhh
Confidence 12333333333322 11 245554 22355666677777777777776543
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.99 E-value=0.0069 Score=60.71 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=27.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeech
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAA 335 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~ 335 (606)
|......++++|+||+|||+++..++.+ .+.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4455567899999999999999987643 2555666554
No 357
>PLN02200 adenylate kinase family protein
Probab=96.99 E-value=0.00091 Score=68.11 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=33.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
+.+.|..+++.|+||+|||++|+.+|.+.|++ .+++++++.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34556789999999999999999999999865 466666654
No 358
>PTZ00202 tuzin; Provisional
Probab=96.97 E-value=0.031 Score=61.86 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=49.4
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechh
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s 336 (606)
+-...+++|.+....+|.+++.... ...|+-+.|+|++|+|||++++.+...++.+.+.++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 3456789999999888887775322 23456789999999999999999999998877776654
No 359
>PRK13808 adenylate kinase; Provisional
Probab=96.97 E-value=0.0021 Score=68.72 Aligned_cols=34 Identities=26% Similarity=0.603 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
|+|+||||+|||++++.|+..++++.+ +..+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQL--STGDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--cccHHHH
Confidence 799999999999999999999987555 4455543
No 360
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.96 E-value=0.0033 Score=66.73 Aligned_cols=117 Identities=19% Similarity=0.192 Sum_probs=65.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhhH------HHHH--hhhh--------------
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASEF------VELF--VGVG-------------- 346 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se~------~~~~--~G~~-------------- 346 (606)
|+....-++|+||||+|||.++-.++..+ +...++++..+- .+.. .|..
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34445568899999999999999998653 336777766441 1100 0000
Q ss_pred -----hHHHHHHHHHHHc-CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 347 -----ASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 347 -----~~~vr~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
...+..+...... ..+.+|+||-|-.+....-.+ .+...++++.+.+++..+..+....++.+|.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG-RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0011122222333 456799999999986432111 1122344555666666665554445566666644
No 361
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.96 E-value=0.0044 Score=72.89 Aligned_cols=115 Identities=24% Similarity=0.238 Sum_probs=63.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH---hcCCCeeeechhhHHH-HH---hhh------------hhHHHHHHHHHHHc
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAG---EAGVPFFSCAASEFVE-LF---VGV------------GASRVRDLFEKAKS 359 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~---e~g~pfi~vs~se~~~-~~---~G~------------~~~~vr~lF~~A~~ 359 (606)
....+.++|+||||||||+|+..++. ..|.+.++++..+-.. .+ .|. .+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 34445689999999999999976544 3366667766543221 00 010 11112222222345
Q ss_pred CCCeEEEEccccchhhccCC-CCCCCC--hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 360 KAPCIVFIDEIDAVGRQRGA-GLGGGN--DEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 360 ~aP~ILfIDEID~L~~~r~~-~~~~~~--~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
..+.+|+||-+.++..+.+- +..+.. ...++.++++|..|..+-...++.+|.+
T Consensus 137 ~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~T 193 (790)
T PRK09519 137 GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFI 193 (790)
T ss_pred CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 67899999999999853221 111111 1233444666666655544455566555
No 362
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.96 E-value=0.0056 Score=63.18 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeechh
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAAS 336 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~s 336 (606)
|......++++|+||||||+++-.++.+ .|-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3444556899999999999999987653 25566666643
No 363
>PRK13949 shikimate kinase; Provisional
Probab=96.94 E-value=0.00078 Score=65.08 Aligned_cols=32 Identities=41% Similarity=0.593 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
+.|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999999988766
No 364
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.94 E-value=0.00075 Score=65.07 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
|+++|+||+|||++|+.+|...+++. ++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 68999999999999999999998654 45555543
No 365
>PRK13695 putative NTPase; Provisional
Probab=96.93 E-value=0.0061 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.++|+|++|+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 366
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.93 E-value=0.045 Score=58.08 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=67.4
Q ss_pred HHHHHHHHHc--C-CCeEEEEccccchhhccCCC---CCCCChhHHHHHHHHHHHhccCCC-CCcEEE--EEeeCC---C
Q 007367 350 VRDLFEKAKS--K-APCIVFIDEIDAVGRQRGAG---LGGGNDEREQTINQLLTEMDGFSG-NSGVIV--LAATNR---P 417 (606)
Q Consensus 350 vr~lF~~A~~--~-aP~ILfIDEID~L~~~r~~~---~~~~~~e~~~~Ln~LL~eld~~~~-~~~ViV--IaaTN~---p 417 (606)
+..++++... . -|.++-||++..+...-.-. ...-+...-.....|+..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3444544443 2 47788899999997652111 111122222334444444332222 233443 555543 2
Q ss_pred C--CccccccCCCc------cc-------------cccccCCCCHHHHHHHHHHHhcCCCCCC---cccHHHHHHhCCCC
Q 007367 418 D--VLDSALLRPGR------FD-------------RQVTVDRPDVAGRVKILQVHSRGKALAK---DVDFEKISRRTPGF 473 (606)
Q Consensus 418 ~--~LD~aLlRpgR------Fd-------------~~I~v~~Pd~~eR~~IL~~~l~~~~l~~---dvdl~~La~~t~G~ 473 (606)
. .++.++....- |. ..|+++..+.+|-..+++.+....-+.. +....+--....|.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G 301 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG 301 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC
Confidence 2 35555553211 21 1578888999999999998876654432 11122222333455
Q ss_pred CHHHHHH
Q 007367 474 TGADLQN 480 (606)
Q Consensus 474 SgaDL~~ 480 (606)
+++++..
T Consensus 302 Np~el~k 308 (309)
T PF10236_consen 302 NPRELEK 308 (309)
T ss_pred CHHHhcc
Confidence 7877753
No 367
>PHA02624 large T antigen; Provisional
Probab=96.93 E-value=0.0078 Score=68.64 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH-HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 378 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~-~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~ 378 (606)
+..+.++|+||||||||+++.+|++.++...+.++++.-... |.+- +... .+.+||++-.-.-...
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~p-----------l~D~--~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGC-----------AIDQ--FMVVFEDVKGQPADNK 495 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhhh-----------hhhc--eEEEeeeccccccccc
Confidence 334589999999999999999999999777777875432221 2211 1111 3788888753322100
Q ss_pred -CCCCCCChhHHHHHHHHHHHhccC-C------CCCc--E---EEEEeeCCCCCccccccCCCccccccccCC
Q 007367 379 -AGLGGGNDEREQTINQLLTEMDGF-S------GNSG--V---IVLAATNRPDVLDSALLRPGRFDRQVTVDR 438 (606)
Q Consensus 379 -~~~~~~~~e~~~~Ln~LL~eld~~-~------~~~~--V---iVIaaTN~p~~LD~aLlRpgRFd~~I~v~~ 438 (606)
-..+.+- .-+..|-..+||. . .... + -.|.|||. ..|+..+.- ||..++.|..
T Consensus 496 ~Lp~G~~~----dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 496 DLPSGQGM----NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cCCccccc----chhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 0000000 0123455666665 1 0011 1 34667775 567888887 9998888843
No 368
>PRK14531 adenylate kinase; Provisional
Probab=96.92 E-value=0.0009 Score=65.16 Aligned_cols=35 Identities=29% Similarity=0.609 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
+.++++||||+|||++++.+|...|++++. +.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 458999999999999999999999877654 44444
No 369
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.01 Score=64.93 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=60.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH----HHHh------------hhhhHHHHHHHHHHHc-C
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV----ELFV------------GVGASRVRDLFEKAKS-K 360 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~----~~~~------------G~~~~~vr~lF~~A~~-~ 360 (606)
.|+-++|.||+|+|||+++..||..+ +..+..+++..+. +.+. ......+.+.+..++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 36789999999999999999998765 4445445543221 1111 1233445555555543 2
Q ss_pred CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 361 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
..++||||-..... .....+.+|...++.......++|+.+|...
T Consensus 320 ~~DvVLIDTaGRs~------------kd~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 320 RVDYILIDTAGKNY------------RASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred CCCEEEEeCccccC------------cCHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 35699999875542 1123455555555443333345555444443
No 370
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.89 E-value=0.0057 Score=59.32 Aligned_cols=107 Identities=18% Similarity=0.131 Sum_probs=60.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH-----HHH---Hhh---------hhhHHHHHHHHHHHcCCCeEEEE
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF-----VEL---FVG---------VGASRVRDLFEKAKSKAPCIVFI 367 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~-----~~~---~~G---------~~~~~vr~lF~~A~~~aP~ILfI 367 (606)
+|++|++|+|||++|..++.+.+.+.+++....- ... +.. +....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887777777754422 111 100 11223444443222 4669999
Q ss_pred ccccchhhccCCCCCCC-ChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 368 DEIDAVGRQRGAGLGGG-NDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 368 DEID~L~~~r~~~~~~~-~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
|-+..+..+--...... .......+..|+..+... +.-+|..+|..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~----~~~~viVsnEv 126 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNK----PGTLILVSNEV 126 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcC----CCcEEEEECCc
Confidence 99998876542210000 012234455566666532 22344445643
No 371
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.89 E-value=0.0015 Score=70.29 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=44.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC----CCeeeech-hhHHH---------HHhhhhhHHHHHHHHHHHcCCCeEEEEc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAA-SEFVE---------LFVGVGASRVRDLFEKAKSKAPCIVFID 368 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g----~pfi~vs~-se~~~---------~~~G~~~~~vr~lF~~A~~~aP~ILfID 368 (606)
..+|++||+|+|||++.+++.+... ..++.+.- .++.. ..+|.......+.+..+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999988654 22332211 12110 0112222235566677777899999999
Q ss_pred ccc
Q 007367 369 EID 371 (606)
Q Consensus 369 EID 371 (606)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 993
No 372
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.88 E-value=0.00091 Score=61.57 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
+.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.88 E-value=0.013 Score=62.41 Aligned_cols=74 Identities=27% Similarity=0.303 Sum_probs=44.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH-------HHHhhh-------------hhHHHHHHHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-------ELFVGV-------------GASRVRDLFEK 356 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~-------~~~~G~-------------~~~~vr~lF~~ 356 (606)
..|.-++|+||+|+||||++..+|..+ +..+..+++.-+. ..|... ....+.+.+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 346778999999999999999998865 4455545443221 111110 01122333444
Q ss_pred HHcCCCeEEEEccccch
Q 007367 357 AKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 357 A~~~aP~ILfIDEID~L 373 (606)
+......+|+||=...+
T Consensus 192 ~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 192 AKARGIDVLIIDTAGRL 208 (318)
T ss_pred HHhCCCCEEEEeCCCCC
Confidence 45555678999877655
No 374
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.87 E-value=0.0011 Score=67.33 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
..|..++|.||||+||||+|+.+|...+++++.+.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 34556999999999999999999999998777553
No 375
>PRK06217 hypothetical protein; Validated
Probab=96.87 E-value=0.00094 Score=64.97 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
.|+|.|+||+|||+++++|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 376
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.86 E-value=0.0062 Score=57.38 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=17.7
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTL-LARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~-LArAIA~e 325 (606)
+.+++.||+|+|||+ ++..+...
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEA 48 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH
Confidence 468999999999999 55555443
No 377
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.85 E-value=0.0081 Score=58.61 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC-------------CeeeechhhHHHHHh------hh------hhHHHHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGV-------------PFFSCAASEFVELFV------GV------GASRVRDLFEK 356 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~-------------pfi~vs~se~~~~~~------G~------~~~~vr~lF~~ 356 (606)
..-+.|.||.|+|||||.+++....|- ++.++.-.++.+.+- .. +..+.+-.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence 345789999999999999999743321 122222112222110 00 11233444555
Q ss_pred HHcCC--CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 357 AKSKA--PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 357 A~~~a--P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
+-... |.++++||--.-. +....+.+.+++..+. . .+..||.+|+.++
T Consensus 101 al~~~~~p~llLlDEPt~~L----------D~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~ 150 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTGL----------HQQDINQLLEVIKGLI---D-LGNTVILIEHNLD 150 (176)
T ss_pred HHhhCCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHH
Confidence 55667 8999999985432 3333444444555442 1 2345666777765
No 378
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.85 E-value=0.0032 Score=67.73 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhh------HHHHH--hhhh---------------
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE------FVELF--VGVG--------------- 346 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se------~~~~~--~G~~--------------- 346 (606)
+....-..|+||||||||.|+..++-.. +..+++++... +.... .|..
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCC
Confidence 3334457899999999999999886422 24566666533 11110 0000
Q ss_pred ----hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 347 ----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 347 ----~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
...+..+-.......+.+|+||-|-.+....-.+ .+...++++.+++++..|..+....++.||.+
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 0111222222334568899999999886542111 11223556667777777665544455555555
No 379
>PTZ00035 Rad51 protein; Provisional
Probab=96.85 E-value=0.0049 Score=66.17 Aligned_cols=115 Identities=19% Similarity=0.227 Sum_probs=64.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhh------HHHHHh--hh---------------
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE------FVELFV--GV--------------- 345 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se------~~~~~~--G~--------------- 345 (606)
|+....-+.|+||||+|||+++..++... +...++++... +..... +.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 33444567899999999999999987533 23455655432 111100 00
Q ss_pred ----hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 346 ----GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 346 ----~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
....+..+........+.+|+||-|-.+....-.+ .+...++++.+.+++..|..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG-RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC-cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 00111222222334567899999999986532111 11223456667777777766544455666654
No 380
>PRK04328 hypothetical protein; Provisional
Probab=96.84 E-value=0.011 Score=60.79 Aligned_cols=38 Identities=32% Similarity=0.421 Sum_probs=27.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeech
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAA 335 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~ 335 (606)
|......+|++|+||||||+++..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3444567899999999999998876543 3566666655
No 381
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.83 E-value=0.004 Score=58.77 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66777777665543
No 382
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.82 E-value=0.0011 Score=64.38 Aligned_cols=34 Identities=38% Similarity=0.742 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
|+|+|+||+|||++|+.||.+.+++++. ..+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 7999999999999999999999877654 444443
No 383
>PLN02674 adenylate kinase
Probab=96.81 E-value=0.0043 Score=63.70 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
+..++|.||||+||+|+++.||...+++. ++..+++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 45699999999999999999999998654 555666544
No 384
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.002 Score=63.06 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
.++|.||||+||||+|+.||+. .++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4799999999999999999999 455566655544
No 385
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.81 E-value=0.0011 Score=61.98 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
++|+|+||+|||++|+.++...+.+++ +.+.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
No 386
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.80 E-value=0.0041 Score=72.80 Aligned_cols=67 Identities=27% Similarity=0.331 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCC
Q 007367 348 SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRP 427 (606)
Q Consensus 348 ~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRp 427 (606)
++-|-.+..|--..|.||++||.-+- -+.+.++.+.+-|.++.. +..+|..|+|+.. .+
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSa----------LD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~t-----i~- 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSA----------LDPETEAIILQNLLQILQ-----GRTVIIIAHRLST-----IR- 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccc----------cCHhHHHHHHHHHHHHhc-----CCeEEEEEccchH-----hh-
Confidence 44455666666788999999998543 245566666666666552 2356667787653 33
Q ss_pred Ccccccccc
Q 007367 428 GRFDRQVTV 436 (606)
Q Consensus 428 gRFd~~I~v 436 (606)
++|+.+.+
T Consensus 673 -~adrIiVl 680 (709)
T COG2274 673 -SADRIIVL 680 (709)
T ss_pred -hccEEEEc
Confidence 45555554
No 387
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.80 E-value=0.0064 Score=59.38 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 007367 305 CLLVGPPGTGKTLLARAVA 323 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA 323 (606)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 388
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.79 E-value=0.0042 Score=66.80 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 389
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.79 E-value=0.0016 Score=69.53 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=46.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeec-hhhHHH------HHhhhhhHHHHHHHHHHHcCCCeEEEEcc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCA-ASEFVE------LFVGVGASRVRDLFEKAKSKAPCIVFIDE 369 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs-~se~~~------~~~G~~~~~vr~lF~~A~~~aP~ILfIDE 369 (606)
.+++|++|++|+|||++++++..+. +..++.+. ..++.- .+.....-...++++.+....|+.|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 3579999999999999999998875 22333322 112110 00111223466788888889999999999
Q ss_pred cc
Q 007367 370 ID 371 (606)
Q Consensus 370 ID 371 (606)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 93
No 390
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.79 E-value=0.0073 Score=62.65 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=55.3
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeeeech-hhHHH-
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAA-SEFVE- 340 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~-se~~~- 340 (606)
.+++++.-.++..+.|++++. .+ ...+++.||+|+|||++++++..+.. ..++.+.- .++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~~----------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---KP----------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---cC----------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 467776544454444443332 11 12479999999999999999977653 23333321 11110
Q ss_pred -----HHhhhhhHHHHHHHHHHHcCCCeEEEEccccc
Q 007367 341 -----LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 341 -----~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~ 372 (606)
...........+++..+....|++|+|+|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 00011112355667777788999999999954
No 391
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.78 E-value=0.0076 Score=57.72 Aligned_cols=32 Identities=41% Similarity=0.393 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~s 336 (606)
++++|+||+|||++++.++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998764 6667666665
No 392
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.77 E-value=0.0044 Score=65.67 Aligned_cols=36 Identities=36% Similarity=0.568 Sum_probs=31.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
..++..|+|+|++|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 355678999999999999999999999999999543
No 393
>PHA02774 E1; Provisional
Probab=96.75 E-value=0.0043 Score=70.42 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeee-ech
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFS-CAA 335 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~-vs~ 335 (606)
++++|+||||||||++|-+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 589999999999999999999998655543 443
No 394
>PRK04040 adenylate kinase; Provisional
Probab=96.74 E-value=0.0072 Score=59.50 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--CCCeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA--GVPFFS 332 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~--g~pfi~ 332 (606)
|+-++++|+||+|||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 5678999999999999999999998 566543
No 395
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.74 E-value=0.002 Score=64.65 Aligned_cols=129 Identities=24% Similarity=0.350 Sum_probs=60.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH-HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCC
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG 383 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~-~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~ 383 (606)
++|+||+|||||.+|-++|++.|.|++..+.-..... .+|.+.....+ + +..+ =++|||-..- .
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~e-l----~~~~-RiyL~~r~l~---------~ 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSE-L----KGTR-RIYLDDRPLS---------D 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGG-G----TT-E-EEES----GG---------G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHH-H----cccc-eeeecccccc---------C
Confidence 6899999999999999999999999999887655433 22322111111 1 1112 3788865432 1
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccC---CCcccc-ccccCCCCHHHHHHHHHH
Q 007367 384 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLR---PGRFDR-QVTVDRPDVAGRVKILQV 450 (606)
Q Consensus 384 ~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlR---pgRFd~-~I~v~~Pd~~eR~~IL~~ 450 (606)
+.-..++....|+..++.+....++|+=+-+. ..|..-..+ ...|.. +..+++||.+.-..-.+.
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~ 137 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAHGGLILEGGSI--SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKR 137 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTSSEEEEEE--H--HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhccccCceEEeCchH--HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHH
Confidence 23344566777888888887755555544332 111111111 012333 446677887665444433
No 396
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.73 E-value=0.0012 Score=62.67 Aligned_cols=32 Identities=31% Similarity=0.615 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
++|+||+|+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987665 44443
No 397
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.73 E-value=0.0023 Score=68.59 Aligned_cols=70 Identities=24% Similarity=0.314 Sum_probs=46.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeec-hhhHH-----------HHH--hhhhhHHHHHHHHHHHcCCCeEE
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCA-ASEFV-----------ELF--VGVGASRVRDLFEKAKSKAPCIV 365 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs-~se~~-----------~~~--~G~~~~~vr~lF~~A~~~aP~IL 365 (606)
.+++|++|++|+|||++++++..+..- .++.+. ..++. ... .+...-...++++.+....|+.|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 457999999999999999999886632 222221 01111 000 11122346778888999999999
Q ss_pred EEcccc
Q 007367 366 FIDEID 371 (606)
Q Consensus 366 fIDEID 371 (606)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999994
No 398
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.73 E-value=0.0015 Score=69.51 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=46.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeec-hhhHH---HH---HhhhhhHHHHHHHHHHHcCCCeEEEEcc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCA-ASEFV---EL---FVGVGASRVRDLFEKAKSKAPCIVFIDE 369 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs-~se~~---~~---~~G~~~~~vr~lF~~A~~~aP~ILfIDE 369 (606)
.++++++|++|+|||+++++++.+. ...++.+. ..++. .. +.....-...++++.+....|+.|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3579999999999999999999763 12222211 11111 00 0011123467888889999999999999
Q ss_pred cc
Q 007367 370 ID 371 (606)
Q Consensus 370 ID 371 (606)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 93
No 399
>PRK10867 signal recognition particle protein; Provisional
Probab=96.72 E-value=0.019 Score=63.61 Aligned_cols=74 Identities=24% Similarity=0.266 Sum_probs=47.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhHHH----HH---h---h----------hhhHHHHHHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFVE----LF---V---G----------VGASRVRDLFE 355 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~~~----~~---~---G----------~~~~~vr~lF~ 355 (606)
..|.-++++|++|+|||+++..+|..+ |..+..+++..+.. .+ . + ......++..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457889999999999999777776643 66677677653321 11 0 0 01122334555
Q ss_pred HHHcCCCeEEEEccccch
Q 007367 356 KAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 356 ~A~~~aP~ILfIDEID~L 373 (606)
.++.....+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666779999987655
No 400
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.72 E-value=0.042 Score=60.39 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=25.2
Q ss_pred CccccccCCCccccccccCCCCHHHHHHHHHHHhcC
Q 007367 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG 454 (606)
Q Consensus 419 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~ 454 (606)
.|..+|-. |.-+.|.+.-.+.+.-+.++..++..
T Consensus 198 ~LskaLPn--~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 198 PLSKALPN--RVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred hHHHhCCC--CceeEEeecCCCHHHHHHHHHHHhcc
Confidence 46667644 65578889888888888888877754
No 401
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.71 E-value=0.0079 Score=56.40 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=55.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCC--eeeechh---hHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhh
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAAS---EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGR 375 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~p--fi~vs~s---e~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~ 375 (606)
....+.|.||+|+|||+|++++++..... -+.++.. .+...+. .+ .+-+-.+..+-...|.++++||-..=.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS-~G-~~~rv~laral~~~p~illlDEP~~~L- 101 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS-GG-EKMRLALAKLLLENPNLLLLDEPTNHL- 101 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC-HH-HHHHHHHHHHHhcCCCEEEEeCCccCC-
Confidence 34468999999999999999999865210 0111110 0000011 11 122333455556788999999986432
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 376 QRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 376 ~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
+......+.+++.++ . ..+|.+|+..+
T Consensus 102 ---------D~~~~~~l~~~l~~~---~----~til~~th~~~ 128 (144)
T cd03221 102 ---------DLESIEALEEALKEY---P----GTVILVSHDRY 128 (144)
T ss_pred ---------CHHHHHHHHHHHHHc---C----CEEEEEECCHH
Confidence 233344444555544 1 25666777655
No 402
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.70 E-value=0.0051 Score=65.49 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=62.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc------C---CCeeeechhh------HHHHH--hhhh---------------
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA------G---VPFFSCAASE------FVELF--VGVG--------------- 346 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~------g---~pfi~vs~se------~~~~~--~G~~--------------- 346 (606)
.....-+.++|+||+|||+++..++..+ | ...++++..+ +.... .+..
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCC
Confidence 3444567899999999999999887532 1 2456665543 11100 0000
Q ss_pred ----hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 347 ----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 347 ----~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
...+..+........+.+|+||-|-.+....-.+. +....++..+.+++..|..+....++.|+.+
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~t 242 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVIT 242 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 01122222223345688999999999864321111 1112344556777777766544455556555
No 403
>PRK06696 uridine kinase; Validated
Probab=96.70 E-value=0.0022 Score=64.44 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=33.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~ 339 (606)
.|.-|.+.|++|+||||+|+.|+..+ |.+++.++..+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 35678999999999999999999988 7788888877765
No 404
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0071 Score=58.11 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=58.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCC--eeeechhhH--------HH----------HH--------hhhhhHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAASEF--------VE----------LF--------VGVGASRVRD 352 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~p--fi~vs~se~--------~~----------~~--------~G~~~~~vr~ 352 (606)
....+.|.||+|+|||+|.+.+++..... -+.+++..+ .. .+ ...+ .+-+-
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G-~~~rl 105 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGG-QRQRI 105 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHH-HHHHH
Confidence 34468999999999999999999864210 011111110 00 00 0001 12223
Q ss_pred HHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 353 LFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 353 lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
.+..+-...|.+|++||--.-. +......+.+++..+. . +..+|.+|+.++.+
T Consensus 106 ~la~al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 106 AIARALLRDPPILILDEATSAL----------DPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 3455556789999999975432 3344455555665553 1 24667777776644
No 405
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.69 E-value=0.0062 Score=61.75 Aligned_cols=21 Identities=43% Similarity=0.502 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 007367 305 CLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e 325 (606)
.+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 489999999999999988753
No 406
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.69 E-value=0.0017 Score=62.02 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
+.++|+|++|+|||++++.+|+.+|.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988653
No 407
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.68 E-value=0.0097 Score=58.74 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVA 323 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA 323 (606)
.++|+||.|+|||++.|.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 58999999999999999988
No 408
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.67 E-value=0.0042 Score=61.79 Aligned_cols=110 Identities=29% Similarity=0.466 Sum_probs=62.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhcc
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r 377 (606)
|.+....++|.|+.|+|||++.+.|..+ ++.-+..... ..... ...... -|+.|||++.+.++
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~------~kd~~----~~l~~~--~iveldEl~~~~k~- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFD------DKDFL----EQLQGK--WIVELDELDGLSKK- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCC------CcHHH----HHHHHh--HheeHHHHhhcchh-
Confidence 4455667899999999999999999666 2211111000 01111 112222 38999999998421
Q ss_pred CCCCCCCChhHHHHHHHHHHH-hccCCC---------CCcEEEEEeeCCCCCc-cccccCCCccccccccC
Q 007367 378 GAGLGGGNDEREQTINQLLTE-MDGFSG---------NSGVIVLAATNRPDVL-DSALLRPGRFDRQVTVD 437 (606)
Q Consensus 378 ~~~~~~~~~e~~~~Ln~LL~e-ld~~~~---------~~~ViVIaaTN~p~~L-D~aLlRpgRFd~~I~v~ 437 (606)
....+..++.. .+.+.. ....++|+|||..+-| |+.=-| || ..|++.
T Consensus 111 ----------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~ 168 (198)
T PF05272_consen 111 ----------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVS 168 (198)
T ss_pred ----------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEc
Confidence 12355555554 222211 1246889999998755 444445 66 344443
No 409
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.67 E-value=0.023 Score=58.30 Aligned_cols=132 Identities=11% Similarity=0.156 Sum_probs=73.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCC--eeeechhhH---HH-----HHhh---------hhh----HHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAASEF---VE-----LFVG---------VGA----SRVRDLFEKA 357 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~p--fi~vs~se~---~~-----~~~G---------~~~----~~vr~lF~~A 357 (606)
.|-.+++.|++|||||++++.+....... .+.+-+... .. .++. ... ..+.+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 35578999999999999999987755321 111111110 00 0000 000 1111222211
Q ss_pred Hc---CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCcccccc
Q 007367 358 KS---KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQV 434 (606)
Q Consensus 358 ~~---~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I 434 (606)
.. ..+++|+||++..- ...++.+.+++.. ..+-++-+|..+.....||+.++. -.+.++
T Consensus 92 ~~~k~~~~~LiIlDD~~~~------------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK------------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCCc------------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 11 23689999997321 1123445555542 334567888888888889999876 677666
Q ss_pred ccCCCCHHHHHHHHHHH
Q 007367 435 TVDRPDVAGRVKILQVH 451 (606)
Q Consensus 435 ~v~~Pd~~eR~~IL~~~ 451 (606)
-+. -+..+...|++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 664 4566655555544
No 410
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.66 E-value=0.011 Score=66.52 Aligned_cols=77 Identities=22% Similarity=0.163 Sum_probs=52.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhh----------------------------hh
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV----------------------------GA 347 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~----------------------------~~ 347 (606)
......+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+... ..
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 3444568999999999999999887754 5677777665432211110 02
Q ss_pred HHHHHHHHHHHcCCCeEEEEccccchhh
Q 007367 348 SRVRDLFEKAKSKAPCIVFIDEIDAVGR 375 (606)
Q Consensus 348 ~~vr~lF~~A~~~aP~ILfIDEID~L~~ 375 (606)
..+..+.+......|.+|+||-+..+..
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 3445566666777889999999998743
No 411
>PRK14530 adenylate kinase; Provisional
Probab=96.66 E-value=0.0017 Score=64.86 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
.|+|.||||+|||++++.||+.++++++.. .+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHH
Confidence 489999999999999999999999776644 44443
No 412
>PRK06547 hypothetical protein; Provisional
Probab=96.66 E-value=0.0019 Score=62.70 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.+.-|++.|++|+|||++|+.+++..+++++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 456789999999999999999999998887754
No 413
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.66 E-value=0.02 Score=59.78 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=28.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~s 336 (606)
..|+.++|+||+|+|||+++..+|..+ |..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456788999999999999999888755 5555555544
No 414
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.66 E-value=0.013 Score=65.91 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCeeeechh
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE----AGVPFFSCAAS 336 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e----~g~pfi~vs~s 336 (606)
|....+.+|++|+||||||++|..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3455667999999999999999988432 25677777654
No 415
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.65 E-value=0.0019 Score=62.43 Aligned_cols=34 Identities=29% Similarity=0.638 Sum_probs=30.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeech
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~ 335 (606)
++.|+|.|++|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3569999999999999999999999999887664
No 416
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.65 E-value=0.0068 Score=58.31 Aligned_cols=102 Identities=25% Similarity=0.399 Sum_probs=57.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC--eeeechh--------hHHHH----------Hh-------hhhhHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAAS--------EFVEL----------FV-------GVGASRVRDLFE 355 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~p--fi~vs~s--------e~~~~----------~~-------G~~~~~vr~lF~ 355 (606)
.-+.|.||.|+|||+|.+.+++..... -+.++.. .+... +. =.+..+.|-.+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la 108 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLA 108 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHH
Confidence 358999999999999999999864200 0111110 00000 00 001122334555
Q ss_pred HHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 356 KAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 356 ~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
.+-...|.++++||--.- -+......+.+++..+.. .+..+|.+|++.+
T Consensus 109 ~al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 109 RALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 666678999999998543 233444555556655532 1345666777654
No 417
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.65 E-value=0.0057 Score=60.42 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~ 324 (606)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3589999999999999999983
No 418
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.65 E-value=0.0067 Score=65.98 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=44.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC-----CCeeeechh-hHH-----------HHHhhhhhHHHHHHHHHHHcCCCeEEE
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAG-----VPFFSCAAS-EFV-----------ELFVGVGASRVRDLFEKAKSKAPCIVF 366 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g-----~pfi~vs~s-e~~-----------~~~~G~~~~~vr~lF~~A~~~aP~ILf 366 (606)
.+|++||+|+|||++++++..+.. ..++.+.-. ++. ...+|.......+.+..+....|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 579999999999999999987652 233333211 111 111222222455667777788999999
Q ss_pred Eccccc
Q 007367 367 IDEIDA 372 (606)
Q Consensus 367 IDEID~ 372 (606)
++|+-.
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999943
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.63 E-value=0.0048 Score=60.28 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=55.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC--eeeechhhH--HHHH--hhhhhHHHHHHHHHHHcCCCeEEEEccccchhhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAASEF--VELF--VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQ 376 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~p--fi~vs~se~--~~~~--~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~ 376 (606)
..+.|.||.|+|||||.+.+++..... -+.++...+ .... ... ..+.|-.+..+-...|.++++||--.-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts~L-- 102 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSAYL-- 102 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcccC--
Confidence 357899999999999999999864210 011111100 0000 111 1233334555666788999999985432
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 377 r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
+......+..++.++. ...+..+|.+|+..+
T Consensus 103 --------D~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~ 133 (177)
T cd03222 103 --------DIEQRLNAARAIRRLS---EEGKKTALVVEHDLA 133 (177)
T ss_pred --------CHHHHHHHHHHHHHHH---HcCCCEEEEEECCHH
Confidence 3333344444444432 122235666666654
No 420
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.60 E-value=0.0057 Score=63.81 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
+.-++|+|+||||||++|+.++.++. .++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 45689999999999999999999983 3445555555543
No 421
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.59 E-value=0.0072 Score=65.06 Aligned_cols=116 Identities=15% Similarity=0.200 Sum_probs=66.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhh------HHHHH--hhh---------------h
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE------FVELF--VGV---------------G 346 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se------~~~~~--~G~---------------~ 346 (606)
.....-++++|+||+|||.++..++-.. +.+.++++..+ +.+.. .+. .
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCC
Confidence 3344457899999999999998777432 23567776654 11110 000 0
Q ss_pred hH----HHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 347 AS----RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 347 ~~----~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
.. .+..+........+.+|+||-|-.+....-.+ .+....+++.+.+++..|..+....++.||.+..
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~-~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG-RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 01 11122222344568899999999986532111 1122345556778877777665555666666543
No 422
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.056 Score=55.48 Aligned_cols=135 Identities=10% Similarity=0.036 Sum_probs=92.6
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHhcCC---------CeeeechhhHHHH-HhhhhhHHHHHHHHHHHc----CCCeEEE
Q 007367 302 PKGCLLVGPPG-TGKTLLARAVAGEAGV---------PFFSCAASEFVEL-FVGVGASRVRDLFEKAKS----KAPCIVF 366 (606)
Q Consensus 302 p~gVLL~GPPG-TGKT~LArAIA~e~g~---------pfi~vs~se~~~~-~~G~~~~~vr~lF~~A~~----~aP~ILf 366 (606)
....|+.|..+ +||..++..++..... .+..+....-... -..-+...+|++.+.+.. +...|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 45679999998 9999998888775522 2222221100000 001234566776665542 3456999
Q ss_pred EccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHH
Q 007367 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVK 446 (606)
Q Consensus 367 IDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~ 446 (606)
||++|.+. ....|.||..++. +..++++|..|+.++.|.+.+++ |+ ..+.++.|+...-.+
T Consensus 95 I~~ae~mt--------------~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELMN--------------LNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNE 155 (263)
T ss_pred EechHHhC--------------HHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHH
Confidence 99999993 3578899999995 55677888888889999999999 65 578899999888777
Q ss_pred HHHHHhcCC
Q 007367 447 ILQVHSRGK 455 (606)
Q Consensus 447 IL~~~l~~~ 455 (606)
.....+...
T Consensus 156 ~~~~~~~p~ 164 (263)
T PRK06581 156 LYSQFIQPI 164 (263)
T ss_pred HHHHhcccc
Confidence 777666543
No 423
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.58 E-value=0.0057 Score=59.27 Aligned_cols=73 Identities=25% Similarity=0.350 Sum_probs=40.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-------------CCCeeeechhh----HHHHH---------------hh-------
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA-------------GVPFFSCAASE----FVELF---------------VG------- 344 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~-------------g~pfi~vs~se----~~~~~---------------~G------- 344 (606)
-++|+||||+|||+++..++... +.++++++... +...+ ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 37999999999999999887643 23566665432 11111 00
Q ss_pred ----------hhhHHHHHHHHHHHc-CCCeEEEEccccchhhc
Q 007367 345 ----------VGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQ 376 (606)
Q Consensus 345 ----------~~~~~vr~lF~~A~~-~aP~ILfIDEID~L~~~ 376 (606)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001123445555666 56899999999999653
No 424
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0072 Score=57.02 Aligned_cols=103 Identities=25% Similarity=0.351 Sum_probs=57.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC--eeeechhhHH-------HHH------hhhhhHHHHHHHHHHHcCCCeEEEE
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAASEFV-------ELF------VGVGASRVRDLFEKAKSKAPCIVFI 367 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~p--fi~vs~se~~-------~~~------~G~~~~~vr~lF~~A~~~aP~ILfI 367 (606)
..+.|.|++|+|||+|.+++++..... -+.++..... ... ...+ ...+-.+..+-...|.++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEEEE
Confidence 468999999999999999999865321 1222221110 000 1112 22233344555567889999
Q ss_pred ccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 368 DEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 368 DEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
||...=. +......+.+++.++.. . +..++.+|+..+.+
T Consensus 105 DEp~~~l----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 143 (157)
T cd00267 105 DEPTSGL----------DPASRERLLELLRELAE---E-GRTVIIVTHDPELA 143 (157)
T ss_pred eCCCcCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 9986532 23334455555555432 2 23567777765543
No 425
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.57 E-value=0.013 Score=56.17 Aligned_cols=101 Identities=32% Similarity=0.467 Sum_probs=57.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC-----------Ceeeechh------hHHHHH----hhh--hhHHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGV-----------PFFSCAAS------EFVELF----VGV--GASRVRDLFEKA 357 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~-----------pfi~vs~s------e~~~~~----~G~--~~~~vr~lF~~A 357 (606)
...-+.|.||.|+|||+|++.+++.... .+-++... ...+.. ... +..+.|-.+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 3446899999999999999999986420 01111100 111111 000 122334455566
Q ss_pred HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 358 KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
-...|.++++||-..-. +....+.+.+++..+ +..+|.+|++++
T Consensus 106 l~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 106 LLHKPKFVFLDEATSAL----------DEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHcCCCEEEEECCcccc----------CHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 66789999999986532 334445555555544 135666777654
No 426
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.57 E-value=0.0065 Score=60.10 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=30.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~ 343 (606)
-+.|+|++|+|||++++.+++..|.+++ ++.++.....
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~ 40 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREAL 40 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHH
Confidence 3789999999999999999998888877 5556554433
No 427
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.55 E-value=0.0026 Score=67.28 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=46.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeec-hhhHH-------H---HH--hhhhhHHHHHHHHHHHcCCCeE
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCA-ASEFV-------E---LF--VGVGASRVRDLFEKAKSKAPCI 364 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs-~se~~-------~---~~--~G~~~~~vr~lF~~A~~~aP~I 364 (606)
+...++++.||+|+|||++++++.+.... ..+.+. ..++. . .. .+...-.+.+++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 34568999999999999999999987631 122221 01110 0 00 0111234567788888899999
Q ss_pred EEEcccc
Q 007367 365 VFIDEID 371 (606)
Q Consensus 365 LfIDEID 371 (606)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999994
No 428
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.55 E-value=0.016 Score=60.91 Aligned_cols=113 Identities=21% Similarity=0.369 Sum_probs=67.0
Q ss_pred Cce-EEEEcCCCChHHHHHHHHHHhcCC----Ceeee---------chhhHH-HHHhhhhhHHHHHHHHHHHcCCCeEEE
Q 007367 302 PKG-CLLVGPPGTGKTLLARAVAGEAGV----PFFSC---------AASEFV-ELFVGVGASRVRDLFEKAKSKAPCIVF 366 (606)
Q Consensus 302 p~g-VLL~GPPGTGKT~LArAIA~e~g~----pfi~v---------s~se~~-~~~~G~~~~~vr~lF~~A~~~aP~ILf 366 (606)
|+| ||.+||.|+|||+..-++-...+. +.+.+ +-..++ ..-+|..-......++.|-...|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 444 678899999999988888776642 22222 222222 123444444455566667778899999
Q ss_pred EccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHH
Q 007367 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVA 442 (606)
Q Consensus 367 IDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~ 442 (606)
+-|+-.+ +++..-|..-+ .+-+|++|-.-.+ +.. -.||.|.+-++..+
T Consensus 204 vGEmRD~----------------ETi~~ALtAAE-----TGHLV~~TLHT~s----A~~---ti~RiidvFp~~ek 251 (353)
T COG2805 204 VGEMRDL----------------ETIRLALTAAE-----TGHLVFGTLHTNS----AAK---TIDRIIDVFPAEEK 251 (353)
T ss_pred EeccccH----------------HHHHHHHHHHh-----cCCEEEEeccccc----HHH---HHHHHHHhCChhhh
Confidence 9998554 45555555433 4457887755433 222 24455666555443
No 429
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.53 E-value=0.03 Score=62.02 Aligned_cols=74 Identities=20% Similarity=0.143 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH-------HHh---hh----------hhHHHHHHHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE-------LFV---GV----------GASRVRDLFEK 356 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~-------~~~---G~----------~~~~vr~lF~~ 356 (606)
..|.-++|+|++|+||||++..+|..+ |..+..+++..+.. .+. +. .....++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346789999999999999999998765 66666666644321 010 00 01122345556
Q ss_pred HHcCCCeEEEEccccch
Q 007367 357 AKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 357 A~~~aP~ILfIDEID~L 373 (606)
++.....+||||=...+
T Consensus 178 ~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHhCCCCEEEEECCCCC
Confidence 66555679999977544
No 430
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.53 E-value=0.017 Score=58.07 Aligned_cols=126 Identities=26% Similarity=0.341 Sum_probs=76.7
Q ss_pred cCchhhhhcCCCCCc--eEEEEcCCCChHHHHHHHHHHhc---CCCeeeechh----hHHHH------------------
Q 007367 289 KNPDKYTALGAKIPK--GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS----EFVEL------------------ 341 (606)
Q Consensus 289 k~p~~~~~lG~~~p~--gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~s----e~~~~------------------ 341 (606)
.+.+.-+++|.-.|. -+++.|+.|||||.|...++--. +....+++.. +|...
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 445555667766655 47889999999999999987532 3344333321 11110
Q ss_pred ----------H-hhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEE
Q 007367 342 ----------F-VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIV 410 (606)
Q Consensus 342 ----------~-~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViV 410 (606)
| .....+.+..+.+..+.....||+||-+..+.... ....+++++..+..+...+++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 01122334455555555666799999999986431 23456667777776665555444
Q ss_pred EEeeCCCCCccccccC
Q 007367 411 LAATNRPDVLDSALLR 426 (606)
Q Consensus 411 IaaTN~p~~LD~aLlR 426 (606)
+ |-+|+.++++.+-
T Consensus 163 l--Tvhp~~l~e~~~~ 176 (235)
T COG2874 163 L--TVHPSALDEDVLT 176 (235)
T ss_pred E--EeChhhcCHHHHH
Confidence 3 4567888887775
No 431
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.53 E-value=0.01 Score=62.08 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----C-CCeeeechhh
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA----G-VPFFSCAASE 337 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~----g-~pfi~vs~se 337 (606)
.++.++|+||+|+|||+++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45679999999999999999998754 3 5555555544
No 432
>PRK13764 ATPase; Provisional
Probab=96.52 E-value=0.0031 Score=72.35 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=41.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCeeeec-hhhH-----HHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCA-ASEF-----VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs-~se~-----~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~ 372 (606)
.+++|++||+|+||||++++++.++. ..+..+. ..++ ...+... ........+.+....|++|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998764 2221221 1111 1111000 01122233333457799999999854
No 433
>PRK14527 adenylate kinase; Provisional
Probab=96.51 E-value=0.0027 Score=62.15 Aligned_cols=38 Identities=32% Similarity=0.539 Sum_probs=30.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
+.|.-++++||||+|||++|+.++.+.+.+.+. ..++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is--~gd~~ 41 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS--TGDIL 41 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC--ccHHH
Confidence 345679999999999999999999999876554 44444
No 434
>PRK14526 adenylate kinase; Provisional
Probab=96.50 E-value=0.0074 Score=60.57 Aligned_cols=34 Identities=24% Similarity=0.560 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
.++|+||||+|||++++.+|...+.+++ +..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 3789999999999999999999887654 445544
No 435
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.50 E-value=0.0024 Score=61.51 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
-+++.||||+|||++++.++.++|.+. ++..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 478999999999999999999988655 4554443
No 436
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0021 Score=61.78 Aligned_cols=28 Identities=39% Similarity=0.643 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
+-+.|||||||||+|+.||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5789999999999999999999999985
No 437
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.015 Score=58.12 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~ 326 (606)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 438
>PRK14528 adenylate kinase; Provisional
Probab=96.48 E-value=0.0027 Score=62.21 Aligned_cols=30 Identities=30% Similarity=0.630 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.+++.||||+|||++++.++...+++++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999877654
No 439
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.48 E-value=0.0084 Score=73.72 Aligned_cols=133 Identities=22% Similarity=0.337 Sum_probs=91.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH--HHhhh----hhH--HH-HH-HHHHHHcCCCeEEEEccccch
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE--LFVGV----GAS--RV-RD-LFEKAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~--~~~G~----~~~--~v-r~-lF~~A~~~aP~ILfIDEID~L 373 (606)
.+||.||..+|||.+...+|.+.|..|+.++-.+..+ .|.|. ... .. .. +.+..+++ .-|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDELNLA 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDELNLA 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeeccccC
Confidence 4899999999999999999999999999998754432 23332 111 11 12 33333443 37899999654
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHHhccC---------CCCCcEEEEEeeCCCC------CccccccCCCccccccccCC
Q 007367 374 GRQRGAGLGGGNDEREQTINQLLTEMDGF---------SGNSGVIVLAATNRPD------VLDSALLRPGRFDRQVTVDR 438 (606)
Q Consensus 374 ~~~r~~~~~~~~~e~~~~Ln~LL~eld~~---------~~~~~ViVIaaTN~p~------~LD~aLlRpgRFd~~I~v~~ 438 (606)
....-..+|.||..-..+ .++.++.++||-|.|. .|..|++. || ..++|.-
T Consensus 968 -----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFdd 1033 (4600)
T COG5271 968 -----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDD 1033 (4600)
T ss_pred -----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhccc
Confidence 234456777777643221 3456688899999875 37788887 88 5677777
Q ss_pred CCHHHHHHHHHHHh
Q 007367 439 PDVAGRVKILQVHS 452 (606)
Q Consensus 439 Pd~~eR~~IL~~~l 452 (606)
-..++...||+..+
T Consensus 1034 ipedEle~ILh~rc 1047 (4600)
T COG5271 1034 IPEDELEEILHGRC 1047 (4600)
T ss_pred CcHHHHHHHHhccC
Confidence 77888888887544
No 440
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.46 E-value=0.0085 Score=61.87 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=66.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC---------CCeeeechhh-H--------HHHHhhh------------------hhH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAG---------VPFFSCAASE-F--------VELFVGV------------------GAS 348 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g---------~pfi~vs~se-~--------~~~~~G~------------------~~~ 348 (606)
.=|+||||+|||.|+-.+|-... ...++++... | .+.+... -..
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 45899999999999998876442 3466665432 1 1111000 001
Q ss_pred HHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 349 RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 349 ~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
.+..+-.......-.+|+||-|-.+.+..-.+ .+...++...+..++..|..+....++.|+.|..-....+
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 11222222233556799999999997643211 1223466788888888877776666677765544333333
No 441
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.46 E-value=0.02 Score=55.26 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=59.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC--CeeeechhhHHH------H---H----------------hhh--hhHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASEFVE------L---F----------------VGV--GASRVR 351 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~se~~~------~---~----------------~G~--~~~~vr 351 (606)
....+.|.||+|+|||+|++.+++.... --+.++..++.. . | ... +..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 3446899999999999999999986421 011122111100 0 0 000 112233
Q ss_pred HHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 352 DLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 352 ~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
-.+..+-...|.++++||--.-. +......+.+++..+. . +..+|.+|+.++.+
T Consensus 107 v~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 160 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL---K--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 34555566789999999985432 3344555666666553 1 23566666766543
No 442
>PRK02496 adk adenylate kinase; Provisional
Probab=96.46 E-value=0.0024 Score=61.86 Aligned_cols=30 Identities=33% Similarity=0.599 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
-+++.||||+|||++++.||...+.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 379999999999999999999998776643
No 443
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.45 E-value=0.0025 Score=63.36 Aligned_cols=33 Identities=36% Similarity=0.774 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
|++.||||+|||++|+.||...|++.+. ..++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999999876654 44544
No 444
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.01 Score=57.04 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=56.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeechh-------h-------------H------HHHHhhhhhHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAAS-------E-------------F------VELFVGVGASRVRDLF 354 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~s-------e-------------~------~~~~~G~~~~~vr~lF 354 (606)
..+.|.||+|+|||+|.+.+++.... =-+.+++. . + .+...=.+..+.|-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l 106 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence 35899999999999999999985410 00001100 0 0 0000000112233345
Q ss_pred HHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 355 EKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 355 ~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
..+-...|.|+++||-..-. +......+.+++..+.. . +..+|.+|+.++
T Consensus 107 aral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 107 AQALLHDPELLILDEPTSGL----------DPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 56666789999999986542 33444555555555431 2 235666666654
No 445
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.45 E-value=0.0062 Score=57.14 Aligned_cols=35 Identities=26% Similarity=0.555 Sum_probs=28.5
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHh
Q 007367 307 LVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (606)
Q Consensus 307 L~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~ 343 (606)
|.||||+|||++|+.||.+.+. ..++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999875 5566777765544
No 446
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.45 E-value=0.0027 Score=68.38 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeech-hhHHH------------HHhhhhhHHHHHHHHHHHcCCCeE
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAA-SEFVE------------LFVGVGASRVRDLFEKAKSKAPCI 364 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~-se~~~------------~~~G~~~~~vr~lF~~A~~~aP~I 364 (606)
+..+++|++||+|+|||++++++.+.... .++.+.- .++.- ...+...-...+++..+....|+.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 34568999999999999999999987632 2222111 11100 001112234667888888899999
Q ss_pred EEEcccc
Q 007367 365 VFIDEID 371 (606)
Q Consensus 365 LfIDEID 371 (606)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999984
No 447
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.45 E-value=0.0091 Score=58.89 Aligned_cols=41 Identities=34% Similarity=0.527 Sum_probs=32.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc-CCCeeeechhhHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASEFVE 340 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi~vs~se~~~ 340 (606)
..|.-+++.|+||+|||++++.+..+. +..++.++..+|..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 557889999999999999999999888 77888888887654
No 448
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.42 E-value=0.016 Score=62.76 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 275 DQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 275 d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
+++++.+..++..+.. ..|..+++.|+.|||||++.++|...+
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 3444445555554432 346688999999999999999997766
No 449
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.42 E-value=0.014 Score=63.94 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
-++|+||+|+|||+|++.+++...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 489999999999999999999753
No 450
>PLN02199 shikimate kinase
Probab=96.41 E-value=0.022 Score=60.07 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
++|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 47899999999999999999999999998654
No 451
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.41 E-value=0.012 Score=56.25 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.5
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVA 323 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA 323 (606)
++..+++||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999974
No 452
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.40 E-value=0.0036 Score=62.66 Aligned_cols=23 Identities=52% Similarity=0.624 Sum_probs=18.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
-+.+.||.|||||+||-+.|.+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47999999999999999998754
No 453
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.40 E-value=0.017 Score=56.02 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...+.|.||+|+|||+|.+.+++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999854
No 454
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.39 E-value=0.025 Score=63.87 Aligned_cols=112 Identities=20% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhHHHHHhhh----------------------------
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFVELFVGV---------------------------- 345 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~~~~~~G~---------------------------- 345 (606)
|.....-+||+|+||+|||+++..++.+. |-+.++++..+-.+.+...
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Q ss_pred --------hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 346 --------GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 346 --------~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
-...+..+-+......|..|+||-+..+...-.. .......+..|+..+. ..++.+|.+++..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~-----~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~~ 177 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSN-----EAVVRRELRRLFAWLK----QKGVTAVITGERG 177 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccC-----HHHHHHHHHHHHHHHH----hCCCEEEEEECCc
Q ss_pred C
Q 007367 418 D 418 (606)
Q Consensus 418 ~ 418 (606)
.
T Consensus 178 ~ 178 (509)
T PRK09302 178 D 178 (509)
T ss_pred c
No 455
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.39 E-value=0.022 Score=63.08 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhhH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEF 338 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se~ 338 (606)
.+.++|.||+|+||||++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578999999999999888887643 345555665543
No 456
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.38 E-value=0.0094 Score=63.68 Aligned_cols=69 Identities=29% Similarity=0.289 Sum_probs=46.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhh-h-----------hhHHHHHHHHHHHcCCCeEEEEccc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG-V-----------GASRVRDLFEKAKSKAPCIVFIDEI 370 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G-~-----------~~~~vr~lF~~A~~~aP~ILfIDEI 370 (606)
+.++|.|++|+|||+|++.+++..+.+++.-.+.++.....+ . ....... ...+...+..|||+|-
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~- 240 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT- 240 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC-
Confidence 468999999999999999999999999877666655543321 0 0111111 2333344567999995
Q ss_pred cch
Q 007367 371 DAV 373 (606)
Q Consensus 371 D~L 373 (606)
+.+
T Consensus 241 ~~~ 243 (325)
T TIGR01526 241 DFI 243 (325)
T ss_pred ChH
Confidence 554
No 457
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.0086 Score=57.59 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC---CCeeeechhhHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFVE 340 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~se~~~ 340 (606)
..|.-++|+|++|+|||++++.+++.+. ...+.++...+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 3456789999999999999999998875 2345555555443
No 458
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.37 E-value=0.022 Score=55.18 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=57.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeechh--------hHHH---------------HHhhh------hhHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAAS--------EFVE---------------LFVGV------GASRV 350 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~s--------e~~~---------------~~~G~------~~~~v 350 (606)
...+.|.||+|+|||+|.+.+++.... =-+.+++. .+.. .+... +..+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 345899999999999999999986410 00111111 1000 00000 11222
Q ss_pred HHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 351 RDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 351 r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
+-.+..+-...|.++++||--.= -+....+.+.+++..+.. ..+..+|.+|+.++.
T Consensus 105 rl~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 33444555578999999998542 233444556566665532 113456667776653
No 459
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.37 E-value=0.0032 Score=62.82 Aligned_cols=29 Identities=41% Similarity=0.785 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
|+++||||+|||++++.||...+++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 79999999999999999999999766653
No 460
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.34 E-value=0.007 Score=61.67 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 350 VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 350 vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
-|..+..|-...|.+||+||=.. +-+.-....+++|+..+..- -+..+|..|+..+
T Consensus 152 KRvaLARAialdPell~~DEPts----------GLDPI~a~~~~~LI~~L~~~---lg~T~i~VTHDl~ 207 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTS----------GLDPISAGVIDELIRELNDA---LGLTVIMVTHDLD 207 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCC----------CCCcchHHHHHHHHHHHHHh---hCCEEEEEECChH
Confidence 34566667778899999999643 22344456777777776532 2345666666654
No 461
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.33 E-value=0.01 Score=69.83 Aligned_cols=98 Identities=23% Similarity=0.345 Sum_probs=56.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---C--CCeeeechhh----HHHHHhhhhhHHHHHHHHHH---------H-cCCCeE
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA---G--VPFFSCAASE----FVELFVGVGASRVRDLFEKA---------K-SKAPCI 364 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~---g--~pfi~vs~se----~~~~~~G~~~~~vr~lF~~A---------~-~~aP~I 364 (606)
-++|+|+||||||++++++...+ + .+++.+..+. -+....|..+..+..++... . .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 47999999999999999985533 4 4444333221 11112232233444444321 1 123469
Q ss_pred EEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 365 VFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 365 LfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
|+|||+..+.. ..+..|+..+ ....++++++-.+..-
T Consensus 420 lIvDEaSMvd~--------------~~~~~Ll~~~---~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 420 LIVDESSMMDT--------------WLALSLLAAL---PDHARLLLVGDTDQLP 456 (720)
T ss_pred EEEeccccCCH--------------HHHHHHHHhC---CCCCEEEEECcccccc
Confidence 99999988731 3445565543 3456677777655433
No 462
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.0096 Score=61.35 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 348 SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 348 ~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
+.-|-++.+|-...|.+|++||--. +-+...+..+..||.++.. . +..|+..|.+...
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~----------gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~~ 201 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFT----------GVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcHH
Confidence 3445567777778899999999632 2355567777888887763 2 6678888887663
No 463
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.33 E-value=0.0028 Score=56.60 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~ 326 (606)
|+|.|+||||||++|+.|+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 464
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.027 Score=55.13 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
...+.|.||+|+|||+|++.+++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999973
No 465
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.32 E-value=0.047 Score=53.49 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
....+.|.|++|+|||+|++++++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999853
No 466
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.30 E-value=0.023 Score=57.49 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=56.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-h----cCCC---------ee-----eechhhHHHH---HhhhhhHHHHHHHHHHHcC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAG-E----AGVP---------FF-----SCAASEFVEL---FVGVGASRVRDLFEKAKSK 360 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~-e----~g~p---------fi-----~vs~se~~~~---~~G~~~~~vr~lF~~A~~~ 360 (606)
+-++|.||.|+|||++.+.++. . .|.+ ++ .+...+-... ....--.++..+++.+.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~-- 109 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT-- 109 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC--
Confidence 4579999999999999999987 2 1321 11 1111111110 11111234555665553
Q ss_pred CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 361 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
.+++++|||+..=. ...+.......++..+... .+..+|.+|...+.
T Consensus 110 ~~sLvllDE~~~gT---------~~~d~~~i~~~il~~l~~~---~~~~~i~~TH~~~l 156 (222)
T cd03287 110 SRSLVILDELGRGT---------STHDGIAIAYATLHYLLEE---KKCLVLFVTHYPSL 156 (222)
T ss_pred CCeEEEEccCCCCC---------ChhhHHHHHHHHHHHHHhc---cCCeEEEEcccHHH
Confidence 47899999985421 1122223334455554422 24567888888774
No 467
>PRK01184 hypothetical protein; Provisional
Probab=96.27 E-value=0.0037 Score=60.54 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
-|+|+|+||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999998 788999888655
No 468
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.26 E-value=0.01 Score=65.19 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
.+.|.|+|++|||||+|+++||...|.+.+.--+.+..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 46799999999999999999999998876554444444
No 469
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0033 Score=60.99 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
-++++|.||||||++++.++ ++|.+.++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9998887665
No 470
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.24 E-value=0.009 Score=66.55 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=58.9
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEcCCCChHHHHHHHHHHhcCCCeee-echhhHHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKG-CLLVGPPGTGKTLLARAVAGEAGVPFFS-CAASEFVEL 341 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~g-VLL~GPPGTGKT~LArAIA~e~g~pfi~-vs~se~~~~ 341 (606)
...+|+++.......+.+.+++.. |.| +|++||.|+|||+...++.++++-+... ++..|=++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 456788887777776666555432 455 5778999999999999998888654431 222221111
Q ss_pred --------Hhhh-hhHHHHHHHHHHHcCCCeEEEEccccch
Q 007367 342 --------FVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 342 --------~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~L 373 (606)
-+.. ..-.....++..-.+.|+||.+.||-..
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 0000 0011223344455688999999999543
No 471
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.24 E-value=0.0053 Score=66.08 Aligned_cols=25 Identities=56% Similarity=0.917 Sum_probs=21.2
Q ss_pred CCCce--EEEEcCCCChHHHHHHHHHH
Q 007367 300 KIPKG--CLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 300 ~~p~g--VLL~GPPGTGKT~LArAIA~ 324 (606)
.+..| +-|.||+||||||+.|.||+
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34444 67999999999999999998
No 472
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.23 E-value=0.055 Score=60.02 Aligned_cols=74 Identities=26% Similarity=0.296 Sum_probs=47.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhHHH-------HHh---h---------hh-hHHHHHHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFVE-------LFV---G---------VG-ASRVRDLFE 355 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~~~-------~~~---G---------~~-~~~vr~lF~ 355 (606)
..|..++++|++|+|||+++..+|..+ |..+..++|..+.. .+. + .. ....++.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 357889999999999999988877653 56677777653321 110 0 01 122345556
Q ss_pred HHHcCCCeEEEEccccch
Q 007367 356 KAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 356 ~A~~~aP~ILfIDEID~L 373 (606)
.+......+|+||=...+
T Consensus 177 ~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHhcCCCEEEEeCCCcc
Confidence 665666779999987654
No 473
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.22 E-value=0.036 Score=54.43 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...+.|.||+|+|||+|.+.+++..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999875
No 474
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.18 Score=55.07 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=62.3
Q ss_pred CeEEEEccccchhh----ccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEee--CCCCC---------ccccccC
Q 007367 362 PCIVFIDEIDAVGR----QRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT--NRPDV---------LDSALLR 426 (606)
Q Consensus 362 P~ILfIDEID~L~~----~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaT--N~p~~---------LD~aLlR 426 (606)
|.++.||++..+.. ++.... --....-..+..+...+.+-. ..+.++.++. .-+.. .+..++.
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~-~v~P~dl~li~~~~~~i~ndw-t~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg 393 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNK-PVTPLDLTLIHLLRDIISNDW-TFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLG 393 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccC-cCCchhhhHHHHHHHHHhccc-ccceEEEEecccccchhccccccccCCchHhcC
Confidence 56788999999977 322211 111222334444444444322 2334444444 11211 1111111
Q ss_pred CCcccc-----ccccCCCCHHHHHHHHHHHhcCCCCCC----cccHHHHHHhCCCCCHHHHHHHHH
Q 007367 427 PGRFDR-----QVTVDRPDVAGRVKILQVHSRGKALAK----DVDFEKISRRTPGFTGADLQNLMN 483 (606)
Q Consensus 427 pgRFd~-----~I~v~~Pd~~eR~~IL~~~l~~~~l~~----dvdl~~La~~t~G~SgaDL~~Lv~ 483 (606)
+--||. .|+++.++.+|-.+++..+++..-+.. +..+.++--.. +.+++.++.+|-
T Consensus 394 ~egfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 394 EEGFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccchhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 111222 578889999999999998886543332 23345554444 568877777664
No 475
>PRK04182 cytidylate kinase; Provisional
Probab=96.21 E-value=0.0043 Score=59.18 Aligned_cols=29 Identities=41% Similarity=0.654 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
.|+|.|++|+|||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999998875
No 476
>PF13245 AAA_19: Part of AAA domain
Probab=96.20 E-value=0.0066 Score=51.10 Aligned_cols=31 Identities=42% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEcCCCChHH-HHHHHHHHhc------CCCeeeech
Q 007367 305 CLLVGPPGTGKT-LLARAVAGEA------GVPFFSCAA 335 (606)
Q Consensus 305 VLL~GPPGTGKT-~LArAIA~e~------g~pfi~vs~ 335 (606)
+++.|||||||| ++++.++... +..++.+..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 566999999999 5666666554 445555544
No 477
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.19 E-value=0.018 Score=55.26 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=30.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
+..+.|.|+||+|||++|+.++..+ +..+..++...+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 4568999999999999999999876 44566666655443
No 478
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.099 Score=53.80 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=98.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH---Hhhh-hh----HHHHHHHHHHHcC---CCeEE--
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL---FVGV-GA----SRVRDLFEKAKSK---APCIV-- 365 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~---~~G~-~~----~~vr~lF~~A~~~---aP~IL-- 365 (606)
...|.-+||=|+||+|||++|.-+|.++|++-+. +...+.+- ..+. -. ...-+.++..+.. .| ||
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi-sTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~p-iiaG 163 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVI-STDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENP-IIAG 163 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceee-cchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcc-hhhh
Confidence 3457789999999999999999999999987653 32222221 1110 00 0111122222211 11 11
Q ss_pred EEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHH
Q 007367 366 FIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRV 445 (606)
Q Consensus 366 fIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~ 445 (606)
|.|....+.. ..+.++..-++ ...++++=+.-=-|..+++..+. --...+.+-.+|.+..+
T Consensus 164 F~dqa~~V~~-----------GI~~VI~RAi~------eG~~lIIEGvHlVPg~i~~~~~~--~n~~~~~l~i~dee~Hr 224 (299)
T COG2074 164 FEDQASAVMV-----------GIEAVIERAIE------EGEDLIIEGVHLVPGLIKEEALG--NNVFMFMLYIADEELHR 224 (299)
T ss_pred HHHHhHHHHH-----------HHHHHHHHHHh------cCcceEEEeeeeccccccHhhhc--cceEEEEEEeCCHHHHH
Confidence 2222222210 11122222222 22334443333346667666652 21234555667777666
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007367 446 KILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (606)
Q Consensus 446 ~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~ 511 (606)
.-|....+....... ....++. ..+++.+-+.....|...+-..|+.+|+++++++++.
T Consensus 225 ~RF~~R~~~t~~~rp--~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~ 283 (299)
T COG2074 225 ERFYDRIRYTHASRP--GGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILE 283 (299)
T ss_pred HHHHHHHHHHhccCc--hhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHH
Confidence 655544332211111 1233332 2477788888888888889999999999999998764
No 479
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.18 E-value=0.023 Score=69.48 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=51.3
Q ss_pred eEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC--CccccccCCCccccccccCCCC
Q 007367 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVDRPD 440 (606)
Q Consensus 363 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~~Pd 440 (606)
-||+|||+..|.... ..+.+..+..|.. ....-+|.+|.+|.+|+ .|...++. -|..+|-|..-+
T Consensus 1142 IVVIIDE~AdLm~~~-------~kevE~lI~rLAq----kGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-------GKKVEELIARLAQ----KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEEcChHHHHhhh-------hHHHHHHHHHHHH----HhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 389999998885421 1233333333333 33456899999999987 56666665 677888888888
Q ss_pred HHHHHHHHHH
Q 007367 441 VAGRVKILQV 450 (606)
Q Consensus 441 ~~eR~~IL~~ 450 (606)
..+-+.||..
T Consensus 1209 ~~DSrtILd~ 1218 (1355)
T PRK10263 1209 KIDSRTILDQ 1218 (1355)
T ss_pred HHHHHHhcCC
Confidence 8888888753
No 480
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.02 Score=64.67 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
....+.|+||+|+|||+++..||..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998753
No 481
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.17 E-value=0.041 Score=59.84 Aligned_cols=23 Identities=39% Similarity=0.679 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
-++|+||||||||+|++.+++..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36999999999999999998865
No 482
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.17 E-value=0.0056 Score=58.16 Aligned_cols=34 Identities=38% Similarity=0.584 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
|.|+|+||||||+|++.|+.. |.+++.-.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 689999999999999999998 8887754444444
No 483
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.17 E-value=0.022 Score=57.36 Aligned_cols=21 Identities=38% Similarity=0.844 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~ 324 (606)
-+.|+||+|+|||||.|++-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 489999999999999999965
No 484
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.17 E-value=0.039 Score=54.61 Aligned_cols=25 Identities=44% Similarity=0.683 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...+.|.||+|+|||+|++.+++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999853
No 485
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.13 E-value=0.015 Score=60.14 Aligned_cols=72 Identities=25% Similarity=0.243 Sum_probs=45.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC----------CCeeeechhhHHH-----------------HHhhh--hhHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAG----------VPFFSCAASEFVE-----------------LFVGV--GASRVRDL 353 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g----------~pfi~vs~se~~~-----------------~~~G~--~~~~vr~l 353 (606)
..+-|.|++||||||++|.+.+-.. .++..++..+..+ .|..+ +-++-|-.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~ 119 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIG 119 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHH
Confidence 4578999999999999999987442 1111122111111 11111 23344556
Q ss_pred HHHHHcCCCeEEEEccccchh
Q 007367 354 FEKAKSKAPCIVFIDEIDAVG 374 (606)
Q Consensus 354 F~~A~~~aP~ILfIDEID~L~ 374 (606)
+..|....|.+|+.||.-+..
T Consensus 120 IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 120 IARALALNPKLIVADEPVSAL 140 (268)
T ss_pred HHHHHhhCCcEEEecCchhhc
Confidence 666777889999999997764
No 486
>PRK14529 adenylate kinase; Provisional
Probab=96.13 E-value=0.014 Score=59.18 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
.++|.||||+|||++++.|+..++.+.+ +..++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhh
Confidence 3799999999999999999999997765 4444443
No 487
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.13 E-value=0.0049 Score=58.35 Aligned_cols=29 Identities=34% Similarity=0.657 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
|.|+|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887643
No 488
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.12 E-value=0.011 Score=66.67 Aligned_cols=94 Identities=17% Similarity=0.253 Sum_probs=56.2
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEcCCCChHHHHHHHHHHhcC---CCeeeech-hhHH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKG-CLLVGPPGTGKTLLARAVAGEAG---VPFFSCAA-SEFV 339 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~g-VLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~-se~~ 339 (606)
..+++++.-.++..+.+++++. . ++| +|++||+|+|||++.+++.++.. ..++.+.. -++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~---~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR---R-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---c-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 4578887666666555555443 1 344 68999999999999998877653 33333321 1111
Q ss_pred HH-----Hhhh-hhHHHHHHHHHHHcCCCeEEEEccccc
Q 007367 340 EL-----FVGV-GASRVRDLFEKAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 340 ~~-----~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~ 372 (606)
-. .+.. ...........+....|+||++.|+-.
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 00 0000 011234455666678999999999944
No 489
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.12 E-value=0.021 Score=55.62 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=28.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHh
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~ 343 (606)
|.|+|.+|+|||++++.++...+.+++ ++.++.....
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~ 38 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVV 38 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHH
Confidence 689999999999999999998767765 5555554433
No 490
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.12 E-value=0.0076 Score=64.68 Aligned_cols=82 Identities=23% Similarity=0.408 Sum_probs=50.6
Q ss_pred cc-ccccchHHHHHHHHHHHHhcCchhhhhcCCC-CCceEEEEcCCCChHHHHHHHHHHhc-CCCeeeechhhHHHHHhh
Q 007367 268 FA-DVAGADQAKLELQEVVDFLKNPDKYTALGAK-IPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASEFVELFVG 344 (606)
Q Consensus 268 f~-DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~-~p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi~vs~se~~~~~~G 344 (606)
|+ ++.|+++.. .++|++++.... |.. -.+-++|.||+|+|||++++.+-+-+ ..+++.+..+-..+.-.+
T Consensus 59 f~~~~~G~~~~i---~~lV~~fk~AA~----g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 59 FEDEFYGMEETI---ERLVNYFKSAAQ----GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccccCcHHHH---HHHHHHHHHHHh----ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 55 899999995 555555544321 222 23468999999999999999997754 235555544433333333
Q ss_pred hhhHHHHHHHHH
Q 007367 345 VGASRVRDLFEK 356 (606)
Q Consensus 345 ~~~~~vr~lF~~ 356 (606)
.-...+|..|..
T Consensus 132 L~P~~~r~~~~~ 143 (358)
T PF08298_consen 132 LFPKELRREFED 143 (358)
T ss_pred hCCHhHHHHHHH
Confidence 334555555543
No 491
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.12 E-value=0.027 Score=55.76 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 351 RDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 351 r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
|-.+..|--+.|.+|+-||-- ++-+.+...-+..|++++.. -+..|+.||...+.++
T Consensus 145 RvaIARAiV~~P~vLlADEPT----------GNLDp~~s~~im~lfeeinr----~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPT----------GNLDPDLSWEIMRLFEEINR----LGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHccCCCeEeecCCC----------CCCChHHHHHHHHHHHHHhh----cCcEEEEEeccHHHHH
Confidence 344555666889999999952 22344445556667777663 3446777777655443
No 492
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.10 E-value=0.024 Score=57.00 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~ 324 (606)
+-++|+||.|+|||++.|.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4579999999999999999864
No 493
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.026 Score=65.21 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~ 324 (606)
++...+-|+||+|+|||++|..+-+
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999876
No 494
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.09 E-value=0.017 Score=66.12 Aligned_cols=26 Identities=42% Similarity=0.549 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
+..-+.|.||+|+|||||++.+++..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998854
No 495
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.045 Score=54.07 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...+.|.||.|+|||||++.+++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999853
No 496
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.06 E-value=0.0064 Score=65.39 Aligned_cols=70 Identities=26% Similarity=0.333 Sum_probs=46.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeech-hhHH-------HHH------hhhhhHHHHHHHHHHHcCCCeEE
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAA-SEFV-------ELF------VGVGASRVRDLFEKAKSKAPCIV 365 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~-se~~-------~~~------~G~~~~~vr~lF~~A~~~aP~IL 365 (606)
.+++++.|++|+|||++.+++.++..- ..+.+.. .++. ... .|.+.-...+++..+....|+.|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 357999999999999999999886531 1111111 1111 000 11223456778888989999999
Q ss_pred EEcccc
Q 007367 366 FIDEID 371 (606)
Q Consensus 366 fIDEID 371 (606)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999994
No 497
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.05 E-value=0.046 Score=54.57 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=55.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-----hcCCCeee--------------echhh----HHHHHhhhhhHHHHHHHHHHHc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAG-----EAGVPFFS--------------CAASE----FVELFVGVGASRVRDLFEKAKS 359 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~-----e~g~pfi~--------------vs~se----~~~~~~G~~~~~vr~lF~~A~~ 359 (606)
+-++|+||.|+|||++.+.++. .+|.++-. +...+ -.+.|.. ..+++..++..+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~-e~~~~~~il~~~-- 106 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFAS-EMSETAYILDYA-- 106 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHH-HHHHHHHHHHhc--
Confidence 4589999999999999999864 33432100 00110 0111221 122344444433
Q ss_pred CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 360 KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 360 ~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
..|+++++||+..=. ...+.......++..+... +..+|.+|+..+..
T Consensus 107 ~~~~lvllDE~~~gt---------~~~~~~~l~~~il~~l~~~----~~~~i~~TH~~~l~ 154 (204)
T cd03282 107 DGDSLVLIDELGRGT---------SSADGFAISLAILECLIKK----ESTVFFATHFRDIA 154 (204)
T ss_pred CCCcEEEeccccCCC---------CHHHHHHHHHHHHHHHHhc----CCEEEEECChHHHH
Confidence 457899999985411 1222233344455555432 44677788876644
No 498
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.05 E-value=0.021 Score=59.11 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC
Q 007367 348 SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (606)
Q Consensus 348 ~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~ 418 (606)
.+-+-++..|-...|.||++||--... +-..+..+.+++..+. ...+..+|+++++++
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~L----------Di~~Q~evl~ll~~l~---~~~~~tvv~vlHDlN 200 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHL----------DIAHQIEVLELLRDLN---REKGLTVVMVLHDLN 200 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCcccc----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHH
Confidence 344556677777889999999975542 2223333444444443 344567788777654
No 499
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.03 E-value=0.022 Score=57.08 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
...+.|.||.|+|||+|.+.+++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999874
No 500
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.03 E-value=0.043 Score=62.07 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..-+.|+||+|+|||||++.+++..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998754
Done!