Query 007367
Match_columns 606
No_of_seqs 558 out of 3778
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 00:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.2E-62 4E-67 541.2 33.9 340 263-605 10-350 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 3.7E-61 1.3E-65 532.0 29.8 355 245-605 8-363 (499)
3 4b4t_J 26S protease regulatory 100.0 1.8E-52 6.2E-57 449.5 26.5 252 261-512 140-392 (405)
4 4b4t_I 26S protease regulatory 100.0 5.5E-51 1.9E-55 439.7 27.9 254 259-512 172-426 (437)
5 4b4t_H 26S protease regulatory 100.0 1.1E-50 3.8E-55 440.9 25.7 256 261-516 201-457 (467)
6 4b4t_L 26S protease subunit RP 100.0 5.9E-50 2E-54 435.2 27.5 252 261-512 173-425 (437)
7 4b4t_M 26S protease regulatory 100.0 2.9E-50 9.9E-55 437.3 23.6 252 261-512 173-425 (434)
8 4b4t_K 26S protease regulatory 100.0 3.6E-49 1.2E-53 428.3 26.7 251 261-511 164-416 (428)
9 3cf2_A TER ATPase, transitiona 100.0 1.1E-44 3.9E-49 418.3 9.6 249 262-510 470-744 (806)
10 3cf2_A TER ATPase, transitiona 100.0 1.2E-41 4.1E-46 393.2 21.3 246 263-511 198-461 (806)
11 1lv7_A FTSH; alpha/beta domain 100.0 1.7E-39 5.8E-44 327.2 26.7 253 261-513 4-256 (257)
12 3cf0_A Transitional endoplasmi 100.0 2.4E-38 8.3E-43 327.9 24.2 248 262-509 8-281 (301)
13 3h4m_A Proteasome-activating n 100.0 2.1E-37 7.1E-42 315.5 24.2 250 262-511 10-260 (285)
14 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.7E-38 1.3E-42 316.0 17.5 256 265-520 2-260 (262)
15 2x8a_A Nuclear valosin-contain 100.0 9.5E-38 3.3E-42 320.4 18.9 246 263-511 4-266 (274)
16 1ixz_A ATP-dependent metallopr 100.0 4E-36 1.4E-40 302.1 26.4 245 262-506 9-253 (254)
17 1iy2_A ATP-dependent metallopr 100.0 7.4E-36 2.5E-40 304.9 27.7 260 246-506 18-277 (278)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.6E-36 2.9E-40 312.3 23.0 225 262-492 5-233 (322)
19 3eie_A Vacuolar protein sortin 100.0 6.5E-36 2.2E-40 312.3 20.3 226 262-493 11-239 (322)
20 2r62_A Cell division protease 100.0 2.7E-37 9.1E-42 312.4 3.8 251 262-512 4-256 (268)
21 2qp9_X Vacuolar protein sortin 100.0 9.2E-35 3.1E-39 308.4 22.9 225 262-492 44-271 (355)
22 3hu3_A Transitional endoplasmi 100.0 1.8E-34 6.1E-39 318.7 24.9 243 264-509 199-459 (489)
23 2zan_A Vacuolar protein sortin 100.0 2.5E-33 8.7E-38 305.9 20.8 226 261-492 126-355 (444)
24 3d8b_A Fidgetin-like protein 1 100.0 1.5E-31 5.1E-36 283.7 23.2 243 263-511 78-336 (357)
25 3b9p_A CG5977-PA, isoform A; A 100.0 6E-32 2.1E-36 277.1 18.0 242 262-509 14-272 (297)
26 3vfd_A Spastin; ATPase, microt 100.0 5.9E-31 2E-35 281.6 23.1 243 262-510 108-366 (389)
27 1ypw_A Transitional endoplasmi 100.0 3.5E-34 1.2E-38 333.6 -3.8 232 262-493 470-702 (806)
28 3t15_A Ribulose bisphosphate c 100.0 6.2E-31 2.1E-35 271.9 6.7 230 297-541 31-282 (293)
29 1ypw_A Transitional endoplasmi 100.0 4.3E-28 1.5E-32 282.4 23.3 244 263-509 198-459 (806)
30 2c9o_A RUVB-like 1; hexameric 99.9 2.2E-26 7.6E-31 251.6 -1.5 205 263-484 31-262 (456)
31 3syl_A Protein CBBX; photosynt 99.9 2.3E-23 7.9E-28 213.9 13.3 225 267-503 28-280 (309)
32 3uk6_A RUVB-like 2; hexameric 99.9 2.1E-22 7.2E-27 211.7 16.6 221 264-510 39-331 (368)
33 3pfi_A Holliday junction ATP-d 99.9 6.9E-21 2.4E-25 198.3 20.5 217 262-510 22-255 (338)
34 2di4_A Zinc protease, cell div 99.9 1.6E-22 5.4E-27 203.0 7.5 91 511-604 2-94 (238)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 3.7E-20 1.3E-24 191.0 18.5 219 264-510 7-239 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 1.1E-20 3.7E-25 193.0 12.3 237 269-509 15-299 (310)
37 1d2n_A N-ethylmaleimide-sensit 99.8 2.3E-20 7.7E-25 189.3 12.2 221 268-508 32-263 (272)
38 3hws_A ATP-dependent CLP prote 99.8 1.2E-19 4.2E-24 191.9 15.5 221 271-493 17-326 (363)
39 2z4s_A Chromosomal replication 99.8 3.1E-19 1.1E-23 194.5 17.9 222 264-510 100-333 (440)
40 3m6a_A ATP-dependent protease 99.8 4.5E-20 1.5E-24 206.2 10.3 226 265-510 77-342 (543)
41 2v1u_A Cell division control p 99.8 7.9E-19 2.7E-23 183.9 18.9 225 266-510 16-277 (387)
42 1g41_A Heat shock protein HSLU 99.8 1.8E-20 6.3E-25 203.9 4.9 169 269-449 15-189 (444)
43 3u61_B DNA polymerase accessor 99.8 6.3E-19 2.1E-23 182.7 15.6 208 258-508 15-236 (324)
44 2chg_A Replication factor C sm 99.8 1.1E-17 3.8E-22 160.3 18.7 202 263-507 11-224 (226)
45 1l8q_A Chromosomal replication 99.8 3.4E-18 1.2E-22 177.5 16.1 219 264-510 6-241 (324)
46 3pvs_A Replication-associated 99.8 2E-18 6.7E-23 188.7 14.1 205 264-509 21-244 (447)
47 2qby_B CDC6 homolog 3, cell di 99.8 9.1E-18 3.1E-22 176.7 18.4 215 266-510 17-271 (384)
48 1sxj_A Activator 1 95 kDa subu 99.8 2.6E-18 9E-23 190.6 12.7 229 257-508 27-273 (516)
49 1g8p_A Magnesium-chelatase 38 99.7 1.2E-17 4E-22 173.9 16.4 217 264-511 19-324 (350)
50 2r44_A Uncharacterized protein 99.7 1.2E-17 4.3E-22 173.6 16.4 214 267-512 25-300 (331)
51 3bos_A Putative DNA replicatio 99.7 8.8E-18 3E-22 164.2 14.2 206 264-507 23-241 (242)
52 1njg_A DNA polymerase III subu 99.7 3.2E-17 1.1E-21 158.6 17.9 210 262-506 16-248 (250)
53 2qby_A CDC6 homolog 1, cell di 99.7 5.7E-17 1.9E-21 169.4 18.8 224 265-510 16-273 (386)
54 1jbk_A CLPB protein; beta barr 99.7 6.7E-18 2.3E-22 158.1 10.1 159 265-448 18-194 (195)
55 1um8_A ATP-dependent CLP prote 99.7 1.3E-17 4.6E-22 176.9 13.4 235 270-506 22-362 (376)
56 1in4_A RUVB, holliday junction 99.7 4.4E-16 1.5E-20 163.2 22.5 214 265-510 21-251 (334)
57 1sxj_D Activator 1 41 kDa subu 99.7 7.7E-17 2.6E-21 167.6 16.1 212 258-507 26-261 (353)
58 1r6b_X CLPA protein; AAA+, N-t 99.7 4.8E-17 1.6E-21 187.9 15.3 222 265-510 182-434 (758)
59 4fcw_A Chaperone protein CLPB; 99.7 4.3E-17 1.5E-21 167.1 13.0 203 269-490 17-279 (311)
60 1fnn_A CDC6P, cell division co 99.7 2.8E-16 9.7E-21 165.0 19.1 222 266-511 14-276 (389)
61 3pxg_A Negative regulator of g 99.7 7.3E-17 2.5E-21 177.1 14.6 207 264-510 175-407 (468)
62 2chq_A Replication factor C sm 99.7 1.2E-16 4.2E-21 163.3 14.9 203 261-506 9-223 (319)
63 1jr3_A DNA polymerase III subu 99.7 1.1E-15 3.9E-20 160.0 18.1 209 263-506 10-241 (373)
64 3pxi_A Negative regulator of g 99.7 3.2E-16 1.1E-20 181.3 14.5 197 268-488 490-723 (758)
65 1sxj_B Activator 1 37 kDa subu 99.7 1.7E-15 5.9E-20 155.1 17.9 203 262-507 14-229 (323)
66 3pxi_A Negative regulator of g 99.7 4.6E-16 1.6E-20 180.0 15.2 190 264-493 175-389 (758)
67 3te6_A Regulatory protein SIR3 99.7 1.4E-16 4.7E-21 166.8 9.5 197 271-492 22-289 (318)
68 2p65_A Hypothetical protein PF 99.7 1E-16 3.5E-21 150.2 7.6 152 265-440 18-187 (187)
69 1iqp_A RFCS; clamp loader, ext 99.6 1.8E-15 6.3E-20 155.1 16.3 202 261-505 17-230 (327)
70 2bjv_A PSP operon transcriptio 99.6 2.8E-16 9.4E-21 158.4 9.9 204 266-502 3-250 (265)
71 1qvr_A CLPB protein; coiled co 99.6 5.8E-16 2E-20 181.5 14.1 203 265-492 166-395 (854)
72 1r6b_X CLPA protein; AAA+, N-t 99.6 6.9E-16 2.4E-20 178.2 13.4 199 269-488 458-714 (758)
73 1ojl_A Transcriptional regulat 99.6 6E-16 2E-20 160.6 8.4 202 269-503 2-246 (304)
74 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 5.9E-16 2E-20 171.2 8.2 208 269-509 22-285 (500)
75 1sxj_C Activator 1 40 kDa subu 99.6 8.9E-15 3E-19 153.0 14.4 209 260-506 16-236 (340)
76 3f9v_A Minichromosome maintena 99.6 9.4E-16 3.2E-20 173.1 7.1 219 269-509 295-587 (595)
77 1sxj_E Activator 1 40 kDa subu 99.6 4.1E-14 1.4E-18 147.7 16.4 195 260-489 5-244 (354)
78 1qvr_A CLPB protein; coiled co 99.6 1.3E-14 4.5E-19 170.0 13.6 201 268-489 557-819 (854)
79 1w5s_A Origin recognition comp 99.5 2.8E-13 9.5E-18 143.5 20.1 228 266-510 19-294 (412)
80 3co5_A Putative two-component 99.5 1.5E-14 5.2E-19 133.3 7.3 112 270-417 5-116 (143)
81 3n70_A Transport activator; si 99.5 1.6E-14 5.3E-19 133.4 6.7 113 269-417 1-116 (145)
82 3k1j_A LON protease, ATP-depen 99.4 8.8E-13 3E-17 148.9 14.8 221 261-508 33-374 (604)
83 3cmw_A Protein RECA, recombina 99.4 1.5E-13 5.3E-18 168.8 7.9 154 263-417 1014-1218(1706)
84 1a5t_A Delta prime, HOLB; zinc 99.4 4.9E-12 1.7E-16 132.4 15.0 163 300-486 22-209 (334)
85 1ny5_A Transcriptional regulat 99.3 3E-12 1E-16 137.1 10.7 209 268-506 136-384 (387)
86 3kw6_A 26S protease regulatory 99.3 1.5E-11 5.1E-16 102.3 9.5 75 437-511 1-75 (78)
87 2gno_A DNA polymerase III, gam 99.2 3.4E-11 1.2E-15 125.1 12.7 142 273-452 1-152 (305)
88 2krk_A 26S protease regulatory 99.2 2E-11 7E-16 103.8 9.0 78 435-512 7-84 (86)
89 3ec2_A DNA replication protein 99.2 4.5E-11 1.5E-15 113.2 11.8 134 264-418 5-144 (180)
90 3vlf_B 26S protease regulatory 99.2 2.4E-11 8.2E-16 103.7 8.7 79 440-518 2-80 (88)
91 4akg_A Glutathione S-transfera 99.1 2.3E-10 7.8E-15 146.3 15.4 137 302-453 1267-1432(2695)
92 2w58_A DNAI, primosome compone 99.1 2.5E-10 8.4E-15 109.8 9.4 102 265-373 21-127 (202)
93 3dzd_A Transcriptional regulat 99.1 1.2E-10 4.3E-15 123.8 7.9 194 269-489 129-361 (368)
94 3aji_B S6C, proteasome (prosom 99.0 6.7E-10 2.3E-14 93.2 7.4 73 440-512 2-74 (83)
95 3f8t_A Predicted ATPase involv 98.9 5.1E-09 1.7E-13 114.3 13.9 211 271-510 215-484 (506)
96 2fna_A Conserved hypothetical 98.9 3E-08 1E-12 102.0 18.5 189 265-484 9-252 (357)
97 2dzn_B 26S protease regulatory 98.9 5.2E-10 1.8E-14 94.0 2.8 72 442-513 1-72 (82)
98 2qen_A Walker-type ATPase; unk 98.9 9.9E-08 3.4E-12 98.0 20.4 190 266-484 9-248 (350)
99 2qgz_A Helicase loader, putati 98.8 2.2E-09 7.6E-14 111.4 6.3 101 265-373 120-226 (308)
100 2kjq_A DNAA-related protein; s 98.8 6E-09 2E-13 96.9 8.0 101 302-433 36-142 (149)
101 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.8E-09 6.1E-14 113.0 2.8 118 302-424 123-242 (331)
102 2r2a_A Uncharacterized protein 98.6 1.3E-08 4.3E-13 99.5 4.3 129 301-442 4-156 (199)
103 4akg_A Glutathione S-transfera 98.6 5.2E-07 1.8E-11 115.9 18.1 165 303-489 646-840 (2695)
104 1svm_A Large T antigen; AAA+ f 98.5 6.9E-08 2.3E-12 103.2 6.9 119 297-438 164-284 (377)
105 3cmu_A Protein RECA, recombina 98.5 2.2E-07 7.7E-12 116.0 11.4 118 298-415 1423-1562(2050)
106 1jr3_D DNA polymerase III, del 98.3 3.2E-06 1.1E-10 88.0 13.2 174 301-508 17-208 (343)
107 2c9o_A RUVB-like 1; hexameric 98.3 1.6E-06 5.5E-11 94.4 9.3 130 362-510 296-438 (456)
108 1tue_A Replication protein E1; 98.1 1E-06 3.4E-11 86.6 3.7 31 302-332 58-88 (212)
109 3vkg_A Dynein heavy chain, cyt 98.1 9.5E-06 3.3E-10 105.2 13.5 136 303-452 1305-1469(3245)
110 1ye8_A Protein THEP1, hypothet 98.0 1E-05 3.4E-10 77.3 7.5 27 304-330 2-28 (178)
111 2cvh_A DNA repair and recombin 97.9 1.5E-05 5.3E-10 76.5 7.5 38 299-336 17-54 (220)
112 3vkg_A Dynein heavy chain, cyt 97.9 3.4E-05 1.2E-09 100.2 11.7 126 303-449 605-750 (3245)
113 1u0j_A DNA replication protein 97.9 1.4E-05 4.9E-10 81.3 6.3 26 302-327 104-129 (267)
114 2w0m_A SSO2452; RECA, SSPF, un 97.9 7.4E-05 2.5E-09 71.9 11.1 35 300-334 21-58 (235)
115 1n0w_A DNA repair protein RAD5 97.8 3.8E-05 1.3E-09 74.9 8.2 76 300-375 22-133 (243)
116 1z6t_A APAF-1, apoptotic prote 97.8 0.00022 7.6E-09 79.2 15.4 177 266-481 121-327 (591)
117 2ehv_A Hypothetical protein PH 97.8 8.7E-05 3E-09 72.5 9.9 112 300-420 28-185 (251)
118 3sfz_A APAF-1, apoptotic pepti 97.8 0.00047 1.6E-08 82.3 18.1 175 266-480 121-326 (1249)
119 1xp8_A RECA protein, recombina 97.7 5.8E-05 2E-09 80.2 9.0 117 299-415 71-209 (366)
120 2z43_A DNA repair and recombin 97.7 4.5E-05 1.5E-09 79.2 8.0 115 299-414 104-255 (324)
121 2zr9_A Protein RECA, recombina 97.7 2.4E-05 8.1E-10 82.6 5.8 76 300-375 59-153 (349)
122 3hr8_A Protein RECA; alpha and 97.7 5.2E-05 1.8E-09 80.3 8.4 113 301-413 60-194 (356)
123 3upu_A ATP-dependent DNA helic 97.7 9.4E-05 3.2E-09 80.4 10.1 131 257-416 12-166 (459)
124 1qhx_A CPT, protein (chloramph 97.6 4.6E-05 1.6E-09 71.0 5.1 39 302-340 3-41 (178)
125 3cmu_A Protein RECA, recombina 97.6 8.8E-05 3E-09 93.1 8.9 119 298-416 728-868 (2050)
126 4a74_A DNA repair and recombin 97.6 9.7E-05 3.3E-09 71.3 7.4 28 299-326 22-49 (231)
127 1u94_A RECA protein, recombina 97.6 0.00011 3.9E-09 77.6 8.0 77 299-375 60-155 (356)
128 1v5w_A DMC1, meiotic recombina 97.6 0.00012 4.2E-09 76.7 8.1 115 300-415 120-272 (343)
129 2dr3_A UPF0273 protein PH0284; 97.5 0.00041 1.4E-08 67.5 10.1 37 299-335 20-59 (247)
130 1g41_A Heat shock protein HSLU 97.5 0.00063 2.2E-08 74.0 12.4 153 349-507 240-431 (444)
131 3lda_A DNA repair protein RAD5 97.4 0.00015 5.1E-09 78.0 7.1 118 298-416 174-327 (400)
132 2i1q_A DNA repair and recombin 97.4 0.00019 6.3E-09 74.2 7.3 113 300-413 96-255 (322)
133 1pzn_A RAD51, DNA repair and r 97.4 0.00025 8.5E-09 74.6 8.3 29 298-326 127-155 (349)
134 3cmw_A Protein RECA, recombina 97.4 0.00013 4.5E-09 90.5 6.0 78 298-375 728-824 (1706)
135 1gvn_B Zeta; postsegregational 97.3 0.00045 1.5E-08 70.7 8.8 60 275-338 10-69 (287)
136 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.4E-09 68.4 4.1 32 302-333 5-36 (185)
137 2r8r_A Sensor protein; KDPD, P 97.3 0.0024 8.2E-08 63.4 13.3 161 304-490 8-209 (228)
138 3io5_A Recombination and repai 97.3 0.00037 1.3E-08 72.7 7.7 110 304-413 30-168 (333)
139 2a5y_B CED-4; apoptosis; HET: 97.3 0.0032 1.1E-07 69.9 15.3 165 272-473 131-329 (549)
140 2p5t_B PEZT; postsegregational 97.3 0.00066 2.3E-08 67.7 8.7 60 275-338 9-68 (253)
141 2rhm_A Putative kinase; P-loop 97.2 0.00018 6E-09 67.6 4.2 35 299-333 2-36 (193)
142 2zts_A Putative uncharacterize 97.2 0.0013 4.4E-08 64.0 10.3 36 300-335 28-67 (251)
143 1nlf_A Regulatory protein REPA 97.2 0.00054 1.8E-08 69.1 7.5 26 300-325 28-53 (279)
144 3vaa_A Shikimate kinase, SK; s 97.2 0.00021 7.1E-09 68.4 4.1 32 302-333 25-56 (199)
145 2orw_A Thymidine kinase; TMTK, 97.2 9.8E-05 3.3E-09 70.7 1.8 30 304-333 5-37 (184)
146 2iyv_A Shikimate kinase, SK; t 97.1 0.00028 9.4E-09 66.2 3.9 36 303-340 3-38 (184)
147 1kag_A SKI, shikimate kinase I 97.1 0.00072 2.4E-08 62.5 6.6 31 302-332 4-34 (173)
148 1zp6_A Hypothetical protein AT 97.1 0.00041 1.4E-08 65.2 4.7 40 300-339 7-46 (191)
149 3kb2_A SPBC2 prophage-derived 97.1 0.00037 1.3E-08 64.0 4.2 31 304-334 3-33 (173)
150 2r6a_A DNAB helicase, replicat 97.0 0.001 3.5E-08 72.3 8.0 38 298-335 199-240 (454)
151 1cr0_A DNA primase/helicase; R 97.0 0.00084 2.9E-08 68.1 6.9 35 299-333 32-70 (296)
152 2b8t_A Thymidine kinase; deoxy 97.0 0.00083 2.9E-08 66.5 6.6 69 304-373 14-101 (223)
153 3iij_A Coilin-interacting nucl 97.0 0.0004 1.4E-08 65.0 4.0 32 302-333 11-42 (180)
154 4gp7_A Metallophosphoesterase; 97.0 0.001 3.4E-08 62.3 6.7 20 302-321 9-28 (171)
155 1zuh_A Shikimate kinase; alpha 97.0 0.00041 1.4E-08 64.1 3.9 31 303-333 8-38 (168)
156 2iut_A DNA translocase FTSK; n 97.0 0.0042 1.5E-07 69.4 12.7 74 363-449 345-420 (574)
157 1qf9_A UMP/CMP kinase, protein 97.0 0.00043 1.5E-08 64.7 4.0 34 300-333 4-37 (194)
158 1via_A Shikimate kinase; struc 97.0 0.00036 1.2E-08 65.0 3.4 29 304-332 6-34 (175)
159 1y63_A LMAJ004144AAA protein; 97.0 0.00043 1.5E-08 65.4 3.8 32 302-333 10-42 (184)
160 2ius_A DNA translocase FTSK; n 97.0 0.0023 7.8E-08 70.9 10.2 76 361-449 296-374 (512)
161 2cdn_A Adenylate kinase; phosp 97.0 0.00054 1.9E-08 65.3 4.6 34 300-333 18-51 (201)
162 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0016 5.4E-08 65.3 8.2 39 302-340 4-45 (260)
163 3e1s_A Exodeoxyribonuclease V, 96.9 0.00084 2.9E-08 75.3 6.4 97 303-416 205-317 (574)
164 1ly1_A Polynucleotide kinase; 96.9 0.00044 1.5E-08 64.0 3.3 30 302-331 2-32 (181)
165 3jvv_A Twitching mobility prot 96.9 0.0013 4.3E-08 69.6 7.2 96 304-420 125-234 (356)
166 1tev_A UMP-CMP kinase; ploop, 96.9 0.00049 1.7E-08 64.4 3.6 36 302-339 3-38 (196)
167 3t61_A Gluconokinase; PSI-biol 96.9 0.00067 2.3E-08 64.7 4.6 32 302-333 18-49 (202)
168 2q6t_A DNAB replication FORK h 96.9 0.0017 5.7E-08 70.3 8.1 38 298-335 196-237 (444)
169 2fz4_A DNA repair protein RAD2 96.9 0.0043 1.5E-07 61.3 10.3 38 304-341 110-148 (237)
170 1e6c_A Shikimate kinase; phosp 96.9 0.00058 2E-08 63.0 3.7 30 303-332 3-32 (173)
171 3lw7_A Adenylate kinase relate 96.8 0.00052 1.8E-08 62.6 3.3 29 304-333 3-31 (179)
172 2c95_A Adenylate kinase 1; tra 96.8 0.00066 2.2E-08 63.8 3.8 32 302-333 9-40 (196)
173 2ze6_A Isopentenyl transferase 96.8 0.00078 2.7E-08 67.4 4.2 32 304-335 3-34 (253)
174 1aky_A Adenylate kinase; ATP:A 96.8 0.00077 2.6E-08 65.3 3.9 32 302-333 4-35 (220)
175 1g5t_A COB(I)alamin adenosyltr 96.8 0.0033 1.1E-07 61.1 8.3 115 304-436 30-177 (196)
176 2vli_A Antibiotic resistance p 96.7 0.00066 2.3E-08 63.2 3.2 30 302-331 5-34 (183)
177 2pez_A Bifunctional 3'-phospho 96.7 0.0011 3.9E-08 61.8 4.8 38 301-338 4-44 (179)
178 2bwj_A Adenylate kinase 5; pho 96.7 0.00073 2.5E-08 63.7 3.5 36 302-339 12-47 (199)
179 1zd8_A GTP:AMP phosphotransfer 96.7 0.00072 2.5E-08 65.9 3.6 33 301-333 6-38 (227)
180 3cm0_A Adenylate kinase; ATP-b 96.7 0.00063 2.2E-08 63.6 3.0 30 303-332 5-34 (186)
181 3be4_A Adenylate kinase; malar 96.7 0.00072 2.5E-08 65.6 3.4 32 302-333 5-36 (217)
182 3dl0_A Adenylate kinase; phosp 96.7 0.00086 2.9E-08 64.5 3.7 30 304-333 2-31 (216)
183 1vma_A Cell division protein F 96.7 0.0047 1.6E-07 63.9 9.5 74 299-372 101-197 (306)
184 1kht_A Adenylate kinase; phosp 96.7 0.00073 2.5E-08 63.1 3.0 25 303-327 4-28 (192)
185 3bh0_A DNAB-like replicative h 96.7 0.0046 1.6E-07 63.8 9.3 38 298-335 64-104 (315)
186 1ukz_A Uridylate kinase; trans 96.7 0.00098 3.4E-08 63.4 3.9 32 302-333 15-46 (203)
187 1zak_A Adenylate kinase; ATP:A 96.7 0.00081 2.8E-08 65.2 3.3 32 301-332 4-35 (222)
188 3fb4_A Adenylate kinase; psych 96.7 0.00092 3.1E-08 64.2 3.7 30 304-333 2-31 (216)
189 3dm5_A SRP54, signal recogniti 96.7 0.0085 2.9E-07 65.1 11.6 73 301-373 99-194 (443)
190 2pt5_A Shikimate kinase, SK; a 96.7 0.00097 3.3E-08 61.3 3.6 29 304-332 2-30 (168)
191 3kl4_A SRP54, signal recogniti 96.7 0.0056 1.9E-07 66.4 10.1 73 301-373 96-191 (433)
192 3tlx_A Adenylate kinase 2; str 96.6 0.001 3.5E-08 66.0 3.9 33 301-333 28-60 (243)
193 1ak2_A Adenylate kinase isoenz 96.6 0.0011 3.9E-08 64.9 4.0 32 302-333 16-47 (233)
194 2eyu_A Twitching motility prot 96.6 0.0016 5.5E-08 65.7 5.1 68 303-371 26-108 (261)
195 1s96_A Guanylate kinase, GMP k 96.6 0.0043 1.5E-07 60.9 8.0 26 302-327 16-41 (219)
196 1knq_A Gluconate kinase; ALFA/ 96.6 0.0015 5E-08 60.7 4.3 30 303-332 9-38 (175)
197 3umf_A Adenylate kinase; rossm 96.6 0.0014 4.7E-08 64.6 4.2 39 300-340 27-65 (217)
198 4eun_A Thermoresistant glucoki 96.5 0.0016 5.4E-08 62.3 4.3 32 301-332 28-59 (200)
199 1vt4_I APAF-1 related killer D 96.5 0.0044 1.5E-07 73.8 8.7 43 272-325 131-173 (1221)
200 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00094 3.2E-08 70.6 2.6 30 304-333 26-55 (359)
201 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0018 6.1E-08 67.6 4.7 70 303-372 172-251 (330)
202 1jjv_A Dephospho-COA kinase; P 96.4 0.003 1E-07 60.2 5.6 33 303-338 3-35 (206)
203 2ewv_A Twitching motility prot 96.4 0.0049 1.7E-07 65.4 7.7 72 300-371 134-219 (372)
204 2grj_A Dephospho-COA kinase; T 96.4 0.0038 1.3E-07 60.1 6.2 39 304-344 14-52 (192)
205 1nks_A Adenylate kinase; therm 96.4 0.0022 7.4E-08 59.8 4.3 36 304-339 3-41 (194)
206 1e4v_A Adenylate kinase; trans 96.4 0.0017 5.9E-08 62.6 3.5 30 304-333 2-31 (214)
207 3crm_A TRNA delta(2)-isopenten 96.4 0.002 6.8E-08 67.3 4.1 36 301-336 4-39 (323)
208 3uie_A Adenylyl-sulfate kinase 96.3 0.0028 9.6E-08 60.5 4.8 38 301-338 24-64 (200)
209 1cke_A CK, MSSA, protein (cyti 96.3 0.0023 7.7E-08 61.7 4.1 30 303-332 6-35 (227)
210 2pbr_A DTMP kinase, thymidylat 96.3 0.0024 8.4E-08 59.6 4.1 31 304-334 2-35 (195)
211 3sr0_A Adenylate kinase; phosp 96.3 0.0024 8.1E-08 62.3 3.8 35 304-340 2-36 (206)
212 3b6e_A Interferon-induced heli 96.3 0.02 7E-07 54.0 10.4 23 303-325 49-71 (216)
213 2if2_A Dephospho-COA kinase; a 96.3 0.002 6.7E-08 61.3 3.2 29 304-333 3-31 (204)
214 3ake_A Cytidylate kinase; CMP 96.2 0.0034 1.2E-07 59.5 4.6 30 304-333 4-33 (208)
215 2bbw_A Adenylate kinase 4, AK4 96.2 0.0031 1.1E-07 62.1 4.5 31 302-332 27-57 (246)
216 2v54_A DTMP kinase, thymidylat 96.2 0.0029 1E-07 59.8 4.2 33 302-334 4-37 (204)
217 1q57_A DNA primase/helicase; d 96.2 0.01 3.6E-07 64.9 9.1 38 298-335 238-279 (503)
218 2jaq_A Deoxyguanosine kinase; 96.2 0.0025 8.7E-08 60.0 3.6 29 304-332 2-30 (205)
219 1uj2_A Uridine-cytidine kinase 96.2 0.0031 1.1E-07 62.6 4.3 39 301-339 21-67 (252)
220 1uf9_A TT1252 protein; P-loop, 96.2 0.003 1E-07 59.6 3.9 36 302-340 8-43 (203)
221 2wwf_A Thymidilate kinase, put 96.1 0.0023 7.8E-08 61.0 2.8 30 302-331 10-39 (212)
222 2xb4_A Adenylate kinase; ATP-b 96.1 0.0031 1.1E-07 61.4 3.8 34 304-339 2-35 (223)
223 1tf7_A KAIC; homohexamer, hexa 96.1 0.017 5.9E-07 63.7 10.0 109 299-417 278-417 (525)
224 2z0h_A DTMP kinase, thymidylat 96.1 0.0039 1.3E-07 58.5 4.1 29 305-333 3-34 (197)
225 1w36_D RECD, exodeoxyribonucle 96.1 0.013 4.6E-07 65.9 9.2 22 304-325 166-187 (608)
226 2px0_A Flagellar biosynthesis 96.0 0.021 7.1E-07 58.6 9.8 35 301-335 104-142 (296)
227 2gxq_A Heat resistant RNA depe 96.0 0.027 9.1E-07 53.1 9.7 19 303-321 39-57 (207)
228 1nn5_A Similar to deoxythymidy 96.0 0.0027 9.3E-08 60.4 2.7 27 302-328 9-35 (215)
229 3gmt_A Adenylate kinase; ssgci 96.0 0.014 4.8E-07 58.0 7.8 35 304-340 10-44 (230)
230 3r20_A Cytidylate kinase; stru 95.9 0.0047 1.6E-07 61.5 4.2 31 302-332 9-39 (233)
231 3llm_A ATP-dependent RNA helic 95.9 0.038 1.3E-06 53.9 10.7 21 303-323 77-97 (235)
232 1ex7_A Guanylate kinase; subst 95.9 0.011 3.6E-07 56.9 6.5 24 303-326 2-25 (186)
233 2qor_A Guanylate kinase; phosp 95.9 0.0081 2.8E-07 57.4 5.7 28 300-327 10-37 (204)
234 1ltq_A Polynucleotide kinase; 95.9 0.0034 1.2E-07 63.5 3.1 37 302-340 2-39 (301)
235 3bgw_A DNAB-like replicative h 95.9 0.014 4.8E-07 63.3 8.1 38 298-335 193-233 (444)
236 3tau_A Guanylate kinase, GMP k 95.8 0.0088 3E-07 57.6 5.6 26 302-327 8-33 (208)
237 2plr_A DTMP kinase, probable t 95.8 0.005 1.7E-07 58.2 3.8 28 302-329 4-31 (213)
238 3gfo_A Cobalt import ATP-bindi 95.8 0.045 1.6E-06 55.5 11.1 24 303-326 35-58 (275)
239 1kgd_A CASK, peripheral plasma 95.8 0.01 3.5E-07 55.7 5.8 25 302-326 5-29 (180)
240 3nwj_A ATSK2; P loop, shikimat 95.8 0.0057 2E-07 61.4 4.1 31 303-333 49-79 (250)
241 2h92_A Cytidylate kinase; ross 95.8 0.0052 1.8E-07 59.0 3.7 32 302-333 3-34 (219)
242 1m7g_A Adenylylsulfate kinase; 95.8 0.007 2.4E-07 58.2 4.6 38 301-338 24-65 (211)
243 2yvu_A Probable adenylyl-sulfa 95.8 0.0087 3E-07 56.1 5.1 37 301-337 12-51 (186)
244 1tf7_A KAIC; homohexamer, hexa 95.8 0.024 8.3E-07 62.5 9.5 110 301-419 38-187 (525)
245 3zvl_A Bifunctional polynucleo 95.8 0.012 4.1E-07 63.2 6.8 33 301-333 257-289 (416)
246 2qt1_A Nicotinamide riboside k 95.8 0.005 1.7E-07 58.8 3.4 32 302-333 21-53 (207)
247 4g1u_C Hemin import ATP-bindin 95.7 0.038 1.3E-06 55.7 9.9 24 303-326 38-61 (266)
248 1vht_A Dephospho-COA kinase; s 95.7 0.006 2.1E-07 58.7 3.8 31 302-333 4-34 (218)
249 3c8u_A Fructokinase; YP_612366 95.7 0.011 3.7E-07 56.8 5.4 27 301-327 21-47 (208)
250 3a8t_A Adenylate isopentenyltr 95.6 0.0056 1.9E-07 64.2 3.6 35 302-336 40-74 (339)
251 1vpl_A ABC transporter, ATP-bi 95.6 0.058 2E-06 54.1 10.8 24 303-326 42-65 (256)
252 4a1f_A DNAB helicase, replicat 95.6 0.028 9.7E-07 58.9 8.7 37 299-335 43-82 (338)
253 3ney_A 55 kDa erythrocyte memb 95.6 0.023 7.8E-07 55.1 7.4 26 301-326 18-43 (197)
254 3foz_A TRNA delta(2)-isopenten 95.6 0.0071 2.4E-07 62.8 3.9 38 301-338 9-46 (316)
255 2axn_A 6-phosphofructo-2-kinas 95.6 0.025 8.5E-07 62.6 8.6 40 302-341 35-77 (520)
256 1t6n_A Probable ATP-dependent 95.6 0.12 4E-06 49.4 12.3 58 266-325 14-74 (220)
257 1q3t_A Cytidylate kinase; nucl 95.5 0.0091 3.1E-07 58.5 4.5 32 301-332 15-46 (236)
258 2nq2_C Hypothetical ABC transp 95.5 0.055 1.9E-06 54.1 10.2 24 303-326 32-55 (253)
259 3bor_A Human initiation factor 95.5 0.026 9E-07 55.0 7.7 57 263-321 27-86 (237)
260 1hv8_A Putative ATP-dependent 95.5 0.077 2.6E-06 53.9 11.4 58 266-325 6-67 (367)
261 3tui_C Methionine import ATP-b 95.5 0.021 7.1E-07 60.6 7.2 23 303-325 55-77 (366)
262 3thx_B DNA mismatch repair pro 95.5 0.037 1.3E-06 65.3 10.0 107 302-420 673-799 (918)
263 2j41_A Guanylate kinase; GMP, 95.4 0.0084 2.9E-07 56.6 3.7 26 301-326 5-30 (207)
264 2f6r_A COA synthase, bifunctio 95.4 0.0073 2.5E-07 61.3 3.5 35 302-339 75-109 (281)
265 4e22_A Cytidylate kinase; P-lo 95.4 0.01 3.5E-07 59.0 4.5 30 303-332 28-57 (252)
266 1rz3_A Hypothetical protein rb 95.4 0.019 6.6E-07 54.7 6.1 36 301-336 21-59 (201)
267 2pl3_A Probable ATP-dependent 95.4 0.056 1.9E-06 52.3 9.5 54 265-320 24-80 (236)
268 1qde_A EIF4A, translation init 95.4 0.061 2.1E-06 51.4 9.7 53 265-319 13-68 (224)
269 2yhs_A FTSY, cell division pro 95.4 0.15 5.2E-06 56.1 13.8 28 299-326 290-317 (503)
270 3rlf_A Maltose/maltodextrin im 95.3 0.01 3.5E-07 63.2 4.4 23 304-326 31-53 (381)
271 3fvq_A Fe(3+) IONS import ATP- 95.3 0.039 1.3E-06 58.3 8.6 22 304-325 32-53 (359)
272 1v43_A Sugar-binding transport 95.2 0.032 1.1E-06 59.2 7.8 23 303-325 38-60 (372)
273 3asz_A Uridine kinase; cytidin 95.2 0.0096 3.3E-07 56.8 3.3 30 302-331 6-37 (211)
274 2bdt_A BH3686; alpha-beta prot 95.2 0.012 4.2E-07 55.1 3.8 34 304-338 4-37 (189)
275 3d3q_A TRNA delta(2)-isopenten 95.1 0.012 3.9E-07 61.9 3.9 33 303-335 8-40 (340)
276 3nh6_A ATP-binding cassette SU 95.0 0.035 1.2E-06 57.4 7.1 25 302-326 80-104 (306)
277 3thx_A DNA mismatch repair pro 95.0 0.055 1.9E-06 64.0 9.6 22 303-324 663-684 (934)
278 3exa_A TRNA delta(2)-isopenten 95.0 0.014 4.8E-07 60.7 4.0 34 303-336 4-37 (322)
279 1lvg_A Guanylate kinase, GMP k 95.0 0.021 7.2E-07 54.6 5.0 25 302-326 4-28 (198)
280 2yyz_A Sugar ABC transporter, 95.0 0.035 1.2E-06 58.7 7.0 23 303-325 30-52 (359)
281 1zu4_A FTSY; GTPase, signal re 95.0 0.038 1.3E-06 57.4 7.1 37 299-335 102-141 (320)
282 2it1_A 362AA long hypothetical 94.9 0.049 1.7E-06 57.6 8.1 22 304-325 31-52 (362)
283 3iuy_A Probable ATP-dependent 94.9 0.11 3.9E-06 49.8 10.2 58 261-320 14-75 (228)
284 3fdi_A Uncharacterized protein 94.9 0.015 5.2E-07 56.1 3.8 29 304-332 8-36 (201)
285 1xx6_A Thymidine kinase; NESG, 94.9 0.047 1.6E-06 52.4 7.2 70 303-373 9-93 (191)
286 3a00_A Guanylate kinase, GMP k 94.9 0.015 5.2E-07 54.7 3.6 24 303-326 2-25 (186)
287 3tr0_A Guanylate kinase, GMP k 94.8 0.017 5.7E-07 54.5 3.8 24 303-326 8-31 (205)
288 1w4r_A Thymidine kinase; type 94.8 0.017 5.9E-07 56.0 3.9 69 303-373 21-103 (195)
289 1vec_A ATP-dependent RNA helic 94.8 0.14 4.8E-06 48.1 10.2 18 303-320 41-58 (206)
290 2qmh_A HPR kinase/phosphorylas 94.8 0.014 4.9E-07 56.9 3.2 32 302-334 34-65 (205)
291 1x6v_B Bifunctional 3'-phospho 94.8 0.024 8E-07 64.2 5.3 38 301-338 51-91 (630)
292 2xau_A PRE-mRNA-splicing facto 94.8 0.08 2.7E-06 61.3 9.9 23 303-325 110-132 (773)
293 3e70_C DPA, signal recognition 94.7 0.073 2.5E-06 55.4 8.7 27 300-326 127-153 (328)
294 4f4c_A Multidrug resistance pr 94.7 0.049 1.7E-06 66.8 8.3 24 303-326 445-468 (1321)
295 2xxa_A Signal recognition part 94.7 0.074 2.5E-06 57.5 8.8 74 300-373 98-195 (433)
296 3pey_A ATP-dependent RNA helic 94.7 0.21 7.2E-06 51.2 11.9 21 302-322 44-64 (395)
297 1odf_A YGR205W, hypothetical 3 94.6 0.016 5.6E-07 59.2 3.3 28 300-327 29-56 (290)
298 3fe2_A Probable ATP-dependent 94.6 0.12 4.3E-06 50.2 9.6 57 262-320 25-84 (242)
299 2oxc_A Probable ATP-dependent 94.5 0.12 3.9E-06 50.1 9.0 55 263-319 21-78 (230)
300 3qf4_B Uncharacterized ABC tra 94.5 0.075 2.6E-06 59.6 8.6 25 302-326 381-405 (598)
301 3lnc_A Guanylate kinase, GMP k 94.5 0.023 7.9E-07 55.2 3.9 25 302-326 27-52 (231)
302 1wb9_A DNA mismatch repair pro 94.4 0.13 4.6E-06 59.7 10.7 24 302-325 607-630 (800)
303 1ls1_A Signal recognition part 94.4 0.12 4E-06 52.8 9.1 73 301-373 97-192 (295)
304 1wp9_A ATP-dependent RNA helic 94.4 0.11 3.8E-06 54.3 9.1 32 304-335 25-60 (494)
305 2v3c_C SRP54, signal recogniti 94.3 0.087 3E-06 56.9 8.4 36 301-336 98-136 (432)
306 2z0m_A 337AA long hypothetical 94.2 0.089 3E-06 52.8 7.8 33 303-335 32-64 (337)
307 2jeo_A Uridine-cytidine kinase 94.2 0.025 8.6E-07 55.7 3.5 27 303-329 26-52 (245)
308 1q0u_A Bstdead; DEAD protein, 94.2 0.12 4.1E-06 49.4 8.2 19 303-321 42-60 (219)
309 1xti_A Probable ATP-dependent 94.2 0.37 1.3E-05 49.5 12.5 57 266-324 8-67 (391)
310 2oap_1 GSPE-2, type II secreti 94.2 0.015 5.2E-07 64.2 2.0 70 302-371 260-343 (511)
311 2p6r_A Afuhel308 helicase; pro 94.1 0.086 3E-06 59.9 8.3 20 303-322 41-60 (702)
312 3eph_A TRNA isopentenyltransfe 94.1 0.025 8.6E-07 60.7 3.6 32 303-334 3-34 (409)
313 2og2_A Putative signal recogni 94.1 0.053 1.8E-06 57.3 6.0 28 299-326 154-181 (359)
314 2j0s_A ATP-dependent RNA helic 94.1 0.17 5.9E-06 52.7 9.9 57 265-323 36-95 (410)
315 3b9q_A Chloroplast SRP recepto 94.1 0.054 1.8E-06 55.7 5.8 28 299-326 97-124 (302)
316 1z6g_A Guanylate kinase; struc 94.1 0.029 1E-06 54.5 3.6 24 303-326 24-47 (218)
317 4a82_A Cystic fibrosis transme 94.0 0.051 1.7E-06 60.7 6.0 24 303-326 368-391 (578)
318 3qf4_A ABC transporter, ATP-bi 94.0 0.11 3.7E-06 58.2 8.7 25 302-326 369-393 (587)
319 1j8m_F SRP54, signal recogniti 94.0 0.091 3.1E-06 53.9 7.4 72 302-373 98-192 (297)
320 2zj8_A DNA helicase, putative 94.0 0.15 5.2E-06 58.0 10.0 19 302-320 39-57 (720)
321 1znw_A Guanylate kinase, GMP k 94.0 0.033 1.1E-06 53.2 3.8 26 302-327 20-45 (207)
322 1s2m_A Putative ATP-dependent 93.9 0.18 6.2E-06 52.2 9.6 57 265-323 20-79 (400)
323 1htw_A HI0065; nucleotide-bind 93.9 0.042 1.4E-06 51.1 4.1 24 303-326 34-57 (158)
324 1bif_A 6-phosphofructo-2-kinas 93.8 0.13 4.3E-06 55.9 8.5 36 302-337 39-77 (469)
325 2j37_W Signal recognition part 93.8 0.13 4.6E-06 56.6 8.7 36 300-335 99-137 (504)
326 2va8_A SSO2462, SKI2-type heli 93.8 0.16 5.6E-06 57.7 9.7 22 301-322 45-66 (715)
327 4b3f_X DNA-binding protein smu 93.8 0.18 6E-06 57.0 9.9 32 305-336 208-242 (646)
328 2ffh_A Protein (FFH); SRP54, s 93.8 0.2 6.8E-06 54.0 9.8 73 301-373 97-192 (425)
329 1gtv_A TMK, thymidylate kinase 93.8 0.017 5.9E-07 54.8 1.3 24 304-327 2-25 (214)
330 1c9k_A COBU, adenosylcobinamid 93.7 0.034 1.2E-06 53.2 3.3 32 305-337 2-33 (180)
331 3hdt_A Putative kinase; struct 93.7 0.035 1.2E-06 54.7 3.4 29 304-332 16-44 (223)
332 4a2p_A RIG-I, retinoic acid in 93.7 0.27 9.3E-06 53.1 10.8 23 303-325 23-45 (556)
333 3tqc_A Pantothenate kinase; bi 93.7 0.11 3.6E-06 54.1 7.2 28 300-327 90-117 (321)
334 2lna_A AFG3-like protein 2; st 93.6 0.12 4.2E-06 44.6 6.2 59 140-199 15-84 (99)
335 1m8p_A Sulfate adenylyltransfe 93.5 0.044 1.5E-06 61.4 4.2 38 301-338 395-436 (573)
336 2gza_A Type IV secretion syste 93.5 0.049 1.7E-06 57.3 4.4 71 302-372 175-263 (361)
337 2v9p_A Replication protein E1; 93.5 0.047 1.6E-06 56.4 4.1 32 299-330 123-154 (305)
338 3tbk_A RIG-I helicase domain; 93.5 0.38 1.3E-05 51.8 11.5 23 303-325 20-42 (555)
339 1a7j_A Phosphoribulokinase; tr 93.5 0.027 9.2E-07 57.5 2.3 36 303-338 6-44 (290)
340 3ozx_A RNAse L inhibitor; ATP 93.5 0.21 7.1E-06 55.5 9.5 25 302-326 294-318 (538)
341 3eiq_A Eukaryotic initiation f 93.4 0.18 6E-06 52.4 8.5 55 266-322 40-97 (414)
342 3j16_B RLI1P; ribosome recycli 93.4 0.34 1.2E-05 54.6 11.3 24 303-326 104-127 (608)
343 4i1u_A Dephospho-COA kinase; s 93.4 0.082 2.8E-06 51.7 5.5 36 303-341 10-45 (210)
344 3sqw_A ATP-dependent RNA helic 93.4 0.22 7.4E-06 55.2 9.5 58 263-320 14-78 (579)
345 3i5x_A ATP-dependent RNA helic 93.3 0.23 8E-06 54.4 9.6 19 302-320 111-129 (563)
346 1sky_E F1-ATPase, F1-ATP synth 93.3 0.072 2.5E-06 58.2 5.3 23 304-326 153-175 (473)
347 2ged_A SR-beta, signal recogni 93.2 0.083 2.8E-06 48.9 5.0 25 302-326 48-72 (193)
348 2fwr_A DNA repair protein RAD2 93.2 0.11 3.7E-06 55.7 6.6 37 304-340 110-147 (472)
349 4eaq_A DTMP kinase, thymidylat 93.2 0.055 1.9E-06 53.1 3.9 30 302-331 26-57 (229)
350 2j9r_A Thymidine kinase; TK1, 93.2 0.14 4.9E-06 50.2 6.8 67 305-373 31-113 (214)
351 1p9r_A General secretion pathw 93.2 0.1 3.6E-06 56.1 6.4 50 265-327 143-192 (418)
352 1ewq_A DNA mismatch repair pro 93.2 0.2 6.8E-06 58.0 9.1 24 302-325 576-599 (765)
353 1fuu_A Yeast initiation factor 93.2 0.18 6.2E-06 51.8 8.0 55 264-320 19-76 (394)
354 3h1t_A Type I site-specific re 93.2 0.12 4E-06 57.4 7.0 44 272-325 178-221 (590)
355 2o8b_B DNA mismatch repair pro 93.1 0.24 8.1E-06 59.2 9.8 22 302-323 789-810 (1022)
356 1sq5_A Pantothenate kinase; P- 93.0 0.057 1.9E-06 55.3 3.9 26 302-327 80-105 (308)
357 3ber_A Probable ATP-dependent 93.0 0.29 1E-05 48.1 8.9 53 266-320 43-98 (249)
358 3tqf_A HPR(Ser) kinase; transf 93.0 0.061 2.1E-06 51.4 3.7 28 302-330 16-43 (181)
359 3ly5_A ATP-dependent RNA helic 92.9 0.18 6.3E-06 50.0 7.4 19 303-321 92-110 (262)
360 3p32_A Probable GTPase RV1496/ 92.9 0.15 5.1E-06 53.3 6.9 25 302-326 79-103 (355)
361 3cr8_A Sulfate adenylyltranfer 92.9 0.15 5.1E-06 56.9 7.3 40 301-340 368-411 (552)
362 2i3b_A HCR-ntpase, human cance 92.8 0.056 1.9E-06 51.7 3.3 23 304-326 3-25 (189)
363 3vkw_A Replicase large subunit 92.8 0.19 6.4E-06 54.6 7.6 24 302-325 161-184 (446)
364 3j16_B RLI1P; ribosome recycli 92.7 0.23 7.9E-06 56.0 8.5 22 305-326 381-402 (608)
365 1np6_A Molybdopterin-guanine d 92.6 0.074 2.5E-06 50.3 3.7 26 301-326 5-30 (174)
366 3ozx_A RNAse L inhibitor; ATP 92.6 0.54 1.9E-05 52.1 11.2 23 304-326 27-49 (538)
367 2v6i_A RNA helicase; membrane, 92.5 0.25 8.7E-06 52.8 8.3 17 303-319 3-19 (431)
368 2ocp_A DGK, deoxyguanosine kin 92.5 0.074 2.5E-06 52.0 3.7 26 302-327 2-27 (241)
369 3dkp_A Probable ATP-dependent 92.4 0.48 1.7E-05 45.8 9.5 18 303-320 67-84 (245)
370 1p5z_B DCK, deoxycytidine kina 92.4 0.038 1.3E-06 54.9 1.5 30 302-331 24-54 (263)
371 3aez_A Pantothenate kinase; tr 92.3 0.077 2.6E-06 54.8 3.7 27 300-326 88-114 (312)
372 2i4i_A ATP-dependent RNA helic 92.2 0.54 1.9E-05 48.8 10.2 55 263-319 12-69 (417)
373 1rj9_A FTSY, signal recognitio 92.2 0.087 3E-06 54.2 3.9 26 301-326 101-126 (304)
374 3lxw_A GTPase IMAP family memb 92.1 0.18 6.2E-06 49.7 6.1 23 303-325 22-44 (247)
375 3bk7_A ABC transporter ATP-bin 92.1 0.59 2E-05 52.6 10.9 24 303-326 383-406 (607)
376 2orv_A Thymidine kinase; TP4A 92.1 0.23 7.8E-06 49.4 6.6 90 304-416 21-125 (234)
377 1wrb_A DJVLGB; RNA helicase, D 92.1 0.38 1.3E-05 46.9 8.3 18 303-320 61-78 (253)
378 3tif_A Uncharacterized ABC tra 92.0 0.06 2.1E-06 53.1 2.3 24 303-326 32-55 (235)
379 3fmo_B ATP-dependent RNA helic 91.9 0.41 1.4E-05 48.6 8.6 18 302-319 131-148 (300)
380 4f4c_A Multidrug resistance pr 91.9 0.13 4.5E-06 63.0 5.7 24 303-326 1106-1129(1321)
381 2cbz_A Multidrug resistance-as 91.9 0.062 2.1E-06 53.1 2.3 25 302-326 31-55 (237)
382 2onk_A Molybdate/tungstate ABC 91.9 0.071 2.4E-06 52.9 2.7 24 303-326 25-48 (240)
383 2gks_A Bifunctional SAT/APS ki 91.9 0.31 1.1E-05 54.2 8.1 39 302-340 372-413 (546)
384 3kta_A Chromosome segregation 91.8 0.1 3.6E-06 48.2 3.7 24 304-327 28-51 (182)
385 2db3_A ATP-dependent RNA helic 91.7 0.6 2E-05 49.7 10.0 55 263-319 53-110 (434)
386 2pcj_A ABC transporter, lipopr 91.7 0.056 1.9E-06 52.9 1.7 24 303-326 31-54 (224)
387 3b85_A Phosphate starvation-in 91.6 0.068 2.3E-06 51.9 2.2 22 304-325 24-45 (208)
388 1g8f_A Sulfate adenylyltransfe 91.5 0.16 5.5E-06 56.1 5.3 27 302-328 395-421 (511)
389 3fmp_B ATP-dependent RNA helic 91.5 0.45 1.5E-05 51.0 8.8 19 302-320 131-149 (479)
390 1xjc_A MOBB protein homolog; s 91.4 0.12 4.2E-06 48.7 3.6 24 303-326 5-28 (169)
391 1b0u_A Histidine permease; ABC 91.3 0.078 2.7E-06 53.2 2.3 24 303-326 33-56 (262)
392 1mv5_A LMRA, multidrug resista 91.2 0.077 2.6E-06 52.5 2.1 24 303-326 29-52 (243)
393 3l9o_A ATP-dependent RNA helic 91.1 0.92 3.1E-05 54.6 11.8 33 303-335 200-235 (1108)
394 3g5u_A MCG1178, multidrug resi 91.0 0.18 6.3E-06 61.6 5.7 24 303-326 417-440 (1284)
395 3q72_A GTP-binding protein RAD 91.0 0.13 4.3E-06 46.1 3.3 21 304-324 4-24 (166)
396 1g6h_A High-affinity branched- 91.0 0.078 2.7E-06 53.0 2.0 23 304-326 35-57 (257)
397 2zu0_C Probable ATP-dependent 91.0 0.1 3.4E-06 52.6 2.8 23 303-325 47-69 (267)
398 1sgw_A Putative ABC transporte 91.0 0.089 3E-06 51.4 2.4 24 303-326 36-59 (214)
399 2f9l_A RAB11B, member RAS onco 91.0 0.12 4.1E-06 48.4 3.2 23 304-326 7-29 (199)
400 2ghi_A Transport protein; mult 91.0 0.086 3E-06 52.8 2.3 25 302-326 46-70 (260)
401 1lw7_A Transcriptional regulat 91.0 0.12 4.2E-06 54.0 3.6 28 302-329 170-197 (365)
402 2d2e_A SUFC protein; ABC-ATPas 91.0 0.1 3.6E-06 51.8 2.9 23 303-325 30-52 (250)
403 2f1r_A Molybdopterin-guanine d 91.0 0.089 3E-06 49.5 2.3 24 303-326 3-26 (171)
404 1oix_A RAS-related protein RAB 90.9 0.12 4E-06 48.4 3.0 23 304-326 31-53 (191)
405 2ixe_A Antigen peptide transpo 90.9 0.09 3.1E-06 53.1 2.3 24 303-326 46-69 (271)
406 2olj_A Amino acid ABC transpor 90.8 0.091 3.1E-06 52.9 2.3 24 303-326 51-74 (263)
407 1ji0_A ABC transporter; ATP bi 90.8 0.095 3.2E-06 51.8 2.4 24 303-326 33-56 (240)
408 3ice_A Transcription terminati 90.8 0.39 1.3E-05 51.4 7.2 24 303-326 175-198 (422)
409 2pze_A Cystic fibrosis transme 90.8 0.084 2.9E-06 51.8 1.9 24 303-326 35-58 (229)
410 2iw3_A Elongation factor 3A; a 90.7 0.6 2.1E-05 55.4 9.4 22 303-324 462-483 (986)
411 3e2i_A Thymidine kinase; Zn-bi 90.7 0.25 8.4E-06 48.7 5.2 69 304-373 30-113 (219)
412 2qm8_A GTPase/ATPase; G protei 90.7 0.37 1.3E-05 50.1 6.9 24 303-326 56-79 (337)
413 2ff7_A Alpha-hemolysin translo 90.7 0.086 3E-06 52.4 2.0 24 303-326 36-59 (247)
414 4a2q_A RIG-I, retinoic acid in 90.7 1.7 5.9E-05 50.0 13.2 33 303-335 264-304 (797)
415 3oiy_A Reverse gyrase helicase 90.6 0.46 1.6E-05 49.7 7.6 20 303-322 37-56 (414)
416 3sop_A Neuronal-specific septi 90.6 0.13 4.4E-06 51.9 3.2 23 304-326 4-26 (270)
417 2yz2_A Putative ABC transporte 90.6 0.099 3.4E-06 52.5 2.3 24 303-326 34-57 (266)
418 3fht_A ATP-dependent RNA helic 90.6 0.56 1.9E-05 48.4 8.2 53 266-320 25-82 (412)
419 2ykg_A Probable ATP-dependent 90.6 1.3 4.5E-05 49.6 11.9 22 303-324 29-50 (696)
420 3dz8_A RAS-related protein RAB 90.6 0.46 1.6E-05 43.9 6.8 23 304-326 25-47 (191)
421 3fho_A ATP-dependent RNA helic 90.6 0.55 1.9E-05 51.2 8.5 20 302-321 158-177 (508)
422 3lxx_A GTPase IMAP family memb 90.5 0.34 1.2E-05 47.0 6.0 23 303-325 30-52 (239)
423 1z47_A CYSA, putative ABC-tran 90.4 0.12 4.2E-06 54.4 2.9 24 303-326 42-65 (355)
424 2qi9_C Vitamin B12 import ATP- 90.4 0.094 3.2E-06 52.3 1.9 24 303-326 27-50 (249)
425 3d31_A Sulfate/molybdate ABC t 90.3 0.11 3.6E-06 54.7 2.3 24 303-326 27-50 (348)
426 2ihy_A ABC transporter, ATP-bi 90.3 0.11 3.8E-06 52.7 2.4 24 303-326 48-71 (279)
427 2dyk_A GTP-binding protein; GT 90.3 0.16 5.5E-06 45.0 3.2 23 304-326 3-25 (161)
428 1g29_1 MALK, maltose transport 90.0 0.14 4.6E-06 54.4 2.9 24 303-326 30-53 (372)
429 1z2a_A RAS-related protein RAB 89.8 0.17 5.9E-06 45.0 3.1 22 304-325 7-28 (168)
430 4edh_A DTMP kinase, thymidylat 89.7 0.18 6.1E-06 49.1 3.3 30 303-332 7-39 (213)
431 1nrj_B SR-beta, signal recogni 89.7 0.22 7.6E-06 47.1 3.9 25 302-326 12-36 (218)
432 1gm5_A RECG; helicase, replica 89.6 1.2 4.2E-05 51.5 10.8 34 302-335 389-425 (780)
433 2pjz_A Hypothetical protein ST 89.6 0.13 4.6E-06 51.7 2.4 24 303-326 31-54 (263)
434 2ce2_X GTPase HRAS; signaling 89.6 0.18 6.3E-06 44.5 3.1 23 304-326 5-27 (166)
435 2gk6_A Regulator of nonsense t 89.6 0.16 5.4E-06 57.3 3.2 22 304-325 197-218 (624)
436 1oxx_K GLCV, glucose, ABC tran 89.6 0.11 3.8E-06 54.6 1.8 23 303-325 32-54 (353)
437 3g5u_A MCG1178, multidrug resi 89.6 0.85 2.9E-05 55.7 9.8 23 303-325 1060-1082(1284)
438 3v9p_A DTMP kinase, thymidylat 89.6 0.18 6.1E-06 49.7 3.2 24 303-326 26-49 (227)
439 1kao_A RAP2A; GTP-binding prot 89.5 0.2 6.8E-06 44.4 3.2 22 304-325 5-26 (167)
440 2oca_A DAR protein, ATP-depend 89.5 0.66 2.3E-05 50.1 8.0 23 303-325 129-151 (510)
441 2p67_A LAO/AO transport system 89.5 0.55 1.9E-05 48.6 7.1 25 302-326 56-80 (341)
442 2zej_A Dardarin, leucine-rich 89.5 0.14 4.7E-06 47.4 2.2 21 304-324 4-24 (184)
443 3ch4_B Pmkase, phosphomevalona 89.5 0.19 6.6E-06 48.8 3.3 41 299-339 8-49 (202)
444 2wji_A Ferrous iron transport 89.5 0.17 5.8E-06 45.9 2.7 22 304-325 5-26 (165)
445 1u8z_A RAS-related protein RAL 89.3 0.21 7.2E-06 44.3 3.2 23 303-325 5-27 (168)
446 4a2w_A RIG-I, retinoic acid in 89.3 2.6 8.9E-05 49.7 13.4 33 303-335 264-304 (936)
447 1ek0_A Protein (GTP-binding pr 89.3 0.21 7.3E-06 44.4 3.2 23 304-326 5-27 (170)
448 1svi_A GTP-binding protein YSX 89.3 0.19 6.4E-06 46.4 2.9 24 302-325 23-46 (195)
449 3gd7_A Fusion complex of cysti 89.1 0.16 5.5E-06 54.1 2.7 23 303-325 48-70 (390)
450 1z0j_A RAB-22, RAS-related pro 89.1 0.22 7.5E-06 44.4 3.2 23 304-326 8-30 (170)
451 2nzj_A GTP-binding protein REM 89.1 0.18 6.3E-06 45.3 2.7 22 304-325 6-27 (175)
452 2xgj_A ATP-dependent RNA helic 89.1 1.1 3.7E-05 53.4 10.0 33 303-335 102-137 (1010)
453 3rc3_A ATP-dependent RNA helic 88.9 0.93 3.2E-05 51.7 8.9 23 303-325 156-178 (677)
454 2wjg_A FEOB, ferrous iron tran 88.9 0.21 7.1E-06 45.8 2.9 22 304-325 9-30 (188)
455 1z08_A RAS-related protein RAB 88.9 0.23 8E-06 44.4 3.2 22 304-325 8-29 (170)
456 1wms_A RAB-9, RAB9, RAS-relate 88.8 0.23 8E-06 44.8 3.2 22 304-325 9-30 (177)
457 1g16_A RAS-related protein SEC 88.8 0.22 7.7E-06 44.4 3.1 22 304-325 5-26 (170)
458 1dek_A Deoxynucleoside monopho 88.8 0.21 7.1E-06 49.8 3.0 29 304-332 3-31 (241)
459 2bbs_A Cystic fibrosis transme 88.8 0.15 5.3E-06 52.0 2.2 24 303-326 65-88 (290)
460 2erx_A GTP-binding protein DI- 88.8 0.22 7.4E-06 44.5 2.9 22 304-325 5-26 (172)
461 1ky3_A GTP-binding protein YPT 88.8 0.24 8.2E-06 44.7 3.2 23 303-325 9-31 (182)
462 1r2q_A RAS-related protein RAB 88.7 0.25 8.6E-06 44.0 3.2 22 304-325 8-29 (170)
463 2vp4_A Deoxynucleoside kinase; 88.6 0.25 8.4E-06 48.0 3.4 24 302-325 20-43 (230)
464 1c1y_A RAS-related protein RAP 88.6 0.25 8.6E-06 43.9 3.2 22 304-325 5-26 (167)
465 3bc1_A RAS-related protein RAB 88.6 0.25 8.5E-06 45.1 3.2 23 303-325 12-34 (195)
466 3ux8_A Excinuclease ABC, A sub 88.6 0.76 2.6E-05 52.0 7.9 20 303-322 349-368 (670)
467 3tmk_A Thymidylate kinase; pho 88.6 0.37 1.3E-05 47.1 4.6 28 302-329 5-32 (216)
468 3lv8_A DTMP kinase, thymidylat 88.5 0.27 9.1E-06 48.7 3.6 25 302-326 27-51 (236)
469 2hxs_A RAB-26, RAS-related pro 88.5 0.25 8.6E-06 44.6 3.2 22 304-325 8-29 (178)
470 3q85_A GTP-binding protein REM 88.5 0.22 7.5E-06 44.6 2.7 21 304-324 4-24 (169)
471 3ld9_A DTMP kinase, thymidylat 88.4 0.29 9.9E-06 48.1 3.7 26 302-327 21-46 (223)
472 2wsm_A Hydrogenase expression/ 88.4 0.35 1.2E-05 45.8 4.2 24 303-326 31-54 (221)
473 2f7s_A C25KG, RAS-related prot 88.3 1.1 3.7E-05 42.2 7.6 22 304-325 27-48 (217)
474 1r8s_A ADP-ribosylation factor 88.2 0.28 9.5E-06 43.7 3.2 22 304-325 2-23 (164)
475 2npi_A Protein CLP1; CLP1-PCF1 88.2 0.24 8.2E-06 53.9 3.3 24 303-326 139-162 (460)
476 2lkc_A Translation initiation 88.2 0.31 1.1E-05 44.0 3.6 24 302-325 8-31 (178)
477 1z0f_A RAB14, member RAS oncog 88.2 0.28 9.5E-06 44.2 3.2 24 303-326 16-39 (179)
478 2eyq_A TRCF, transcription-rep 88.1 1 3.5E-05 54.4 9.0 33 302-334 624-659 (1151)
479 1upt_A ARL1, ADP-ribosylation 88.1 0.36 1.2E-05 43.2 3.9 24 302-325 7-30 (171)
480 3t1o_A Gliding protein MGLA; G 88.1 0.28 9.6E-06 44.9 3.2 23 304-326 16-38 (198)
481 2y8e_A RAB-protein 6, GH09086P 88.1 0.27 9.2E-06 44.3 3.1 22 304-325 16-37 (179)
482 3clv_A RAB5 protein, putative; 88.0 0.28 9.5E-06 44.9 3.2 23 303-325 8-30 (208)
483 2fn4_A P23, RAS-related protei 87.9 0.28 9.4E-06 44.3 3.0 22 304-325 11-32 (181)
484 2a9k_A RAS-related protein RAL 87.9 0.29 1E-05 44.3 3.2 22 304-325 20-41 (187)
485 3con_A GTPase NRAS; structural 87.9 0.29 1E-05 45.0 3.2 23 304-326 23-45 (190)
486 4dsu_A GTPase KRAS, isoform 2B 87.8 0.3 1E-05 44.5 3.2 23 304-326 6-28 (189)
487 2gj8_A MNME, tRNA modification 87.7 0.26 8.8E-06 45.2 2.7 22 304-325 6-27 (172)
488 2oil_A CATX-8, RAS-related pro 87.7 0.3 1E-05 45.0 3.2 22 304-325 27-48 (193)
489 1m7b_A RND3/RHOE small GTP-bin 87.7 0.29 9.8E-06 45.0 3.1 23 303-325 8-30 (184)
490 2efe_B Small GTP-binding prote 87.6 0.31 1.1E-05 44.1 3.2 22 304-325 14-35 (181)
491 1ko7_A HPR kinase/phosphatase; 87.6 0.32 1.1E-05 50.3 3.7 28 303-331 145-172 (314)
492 1oyw_A RECQ helicase, ATP-depe 87.5 0.72 2.4E-05 50.7 6.6 24 303-326 41-64 (523)
493 2bme_A RAB4A, RAS-related prot 87.5 0.3 1E-05 44.5 3.1 23 303-325 11-33 (186)
494 3tw8_B RAS-related protein RAB 87.4 0.29 9.8E-06 44.1 2.8 21 304-324 11-31 (181)
495 2p5s_A RAS and EF-hand domain 87.4 0.34 1.2E-05 45.2 3.5 24 302-325 28-51 (199)
496 2atv_A RERG, RAS-like estrogen 87.4 0.36 1.2E-05 44.8 3.5 23 303-325 29-51 (196)
497 1pui_A ENGB, probable GTP-bind 87.4 0.15 5.1E-06 47.9 0.9 24 302-325 26-49 (210)
498 4ag6_A VIRB4 ATPase, type IV s 87.3 0.47 1.6E-05 49.8 4.8 33 302-334 35-70 (392)
499 1yrb_A ATP(GTP)binding protein 87.3 0.48 1.7E-05 46.2 4.6 33 302-334 14-48 (262)
500 2wjy_A Regulator of nonsense t 87.1 0.28 9.7E-06 57.0 3.2 22 304-325 373-394 (800)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.2e-62 Score=541.17 Aligned_cols=340 Identities=61% Similarity=1.016 Sum_probs=295.6
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~ 342 (606)
.+.++|+||+|++++|++|++++.+++++..|..+|.++|+|+||+||||||||++|+++|+++++||+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccc
Q 007367 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (606)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~ 422 (606)
.|.+..+++.+|..++..+||||||||||.++.+++.+.++.+.+..+++++||.+|+++....+++||++||+++.||+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999999888776667788889999999999999887788999999999999999
Q ss_pred cccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 007367 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (606)
Q Consensus 423 aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl 502 (606)
+++|||||++.|.+++|+.++|.+|++.++++.++..++++..++..+.|++++||.++|++|+..|.+++...|+.+|+
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEeeCC-CCCeeEEeccchhhhhccccCHHH
Q 007367 503 SDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRG-QAGGLTFFAPSEERLESGLYSRSY 581 (606)
Q Consensus 503 ~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEaGhAlv~~ll~~~~~v~~vsi~prg-~a~G~~~~~p~e~~~~~~~~t~~~ 581 (606)
.+|+++++.+++++...++++++..++|||+|||++++++++.+++++++|+||| +++||+++.|.++++ ++||++
T Consensus 250 ~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~---~~~~~~ 326 (476)
T 2ce7_A 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKY---LVSRNE 326 (476)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CC---SCBHHH
T ss_pred HHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCccccc---ccCHHH
Confidence 9999999999888888889999999999999999999999999999999999999 899999999987764 789999
Q ss_pred HHHHHHHHhhhHHHHHHHhccccC
Q 007367 582 LENQMAVALGGRLVNLSFLDAWES 605 (606)
Q Consensus 582 l~~~i~~~lgGr~AE~~~~~~~~~ 605 (606)
|+++|+++|||||||+++||+.++
T Consensus 327 l~~~i~~~l~Gr~ae~~~~g~~~~ 350 (476)
T 2ce7_A 327 LLDKLTALLGGRAAEEVVFGDVTS 350 (476)
T ss_dssp HHHHHHHHTHHHHHHHHHHSSCCG
T ss_pred HHHHHHHHHhHHHHHhhhcCCCCc
Confidence 999999999999999999998764
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-61 Score=532.04 Aligned_cols=355 Identities=57% Similarity=0.958 Sum_probs=323.7
Q ss_pred CCCCcccccccccccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 007367 245 LGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 245 ~~~~~~~~~~k~~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~ 324 (606)
.++.|.|++++.++.... +.++|+||+|++++|+++++++.+++++..|..+|.++|+|+||+||||||||+||++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 8 SDSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp ----------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346889999999887766 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC
Q 007367 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG 404 (606)
Q Consensus 325 e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~ 404 (606)
+++.+|+.++++++.+.+.+....+++.+|+.++...|||+||||||.++..++.+..+.+++..+++++||.+|+++..
T Consensus 87 ~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp HTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred HhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 99999999999999998899889999999999988889999999999998877654455677888999999999999988
Q ss_pred CCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHH
Q 007367 405 NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNE 484 (606)
Q Consensus 405 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~e 484 (606)
...+++|++||+|+.||++++||||||++|.|++||.++|.+||+.++++..+..++++..++..+.|++|+||+++|++
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~ 246 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNE 246 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHH
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEeeCCCCCeeEE
Q 007367 485 AAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTF 564 (606)
Q Consensus 485 A~~~A~rr~~~~It~edl~~Al~ri~~g~e~~~~~~s~~~~~~~A~hEaGhAlv~~ll~~~~~v~~vsi~prg~a~G~~~ 564 (606)
|+..|.+++...|+.+|+.+|++++..+.+++...+++++++.++|||+||+++++++++.++|++++|+|||+++||++
T Consensus 247 Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~ 326 (499)
T 2dhr_A 247 AALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM 326 (499)
T ss_dssp HHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH
T ss_pred HHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc
Confidence 99999988888999999999999999998888888999999999999999999999999999999999999999999998
Q ss_pred eccc-hhhhhccccCHHHHHHHHHHHhhhHHHHHHHhccccC
Q 007367 565 FAPS-EERLESGLYSRSYLENQMAVALGGRLVNLSFLDAWES 605 (606)
Q Consensus 565 ~~p~-e~~~~~~~~t~~~l~~~i~~~lgGr~AE~~~~~~~~~ 605 (606)
|. ++.+ ++||++|+++|+++||||+||+++||+.+.
T Consensus 327 --p~q~~~~---~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ 363 (499)
T 2dhr_A 327 --PRREDML---HWSRKRLLDQIAVALAGRAAEEIVFDDVTT 363 (499)
T ss_dssp --HHHTTCC---CCCHHHHHHHHHHHHHHHHHHHHHSCSCCB
T ss_pred --cchhhhh---ccCHHHHHHHHHHHhhhHhHHHhhhcccCc
Confidence 65 4443 689999999999999999999999998764
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-52 Score=449.45 Aligned_cols=252 Identities=38% Similarity=0.708 Sum_probs=242.6
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
...++++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 445689999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
++|+|++++.++.+|..|+..+||||||||||+++++|+.+.++++.+.+.++++||.+||++....+|+||+|||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 99999999999999999999999999999999999999877766777888999999999999999999999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~ 499 (606)
||+||+||||||+.|+|++||.++|.+||+.|+++.++..++|+..||+.|+||||+||.++|++|++.|.++++..|+.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~ 379 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQ 379 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCH
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 007367 500 DEISDALERIIAG 512 (606)
Q Consensus 500 edl~~Al~ri~~g 512 (606)
+||+.|++++...
T Consensus 380 ~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 380 EDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc
Confidence 9999999998753
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-51 Score=439.67 Aligned_cols=254 Identities=37% Similarity=0.670 Sum_probs=243.6
Q ss_pred cccCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007367 259 QEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (606)
Q Consensus 259 ~~~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se 337 (606)
.....++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 34456789999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
+.++|+|++++.++.+|..|+..+||||||||||+++.+|+.+..+++.+...++++||.+||++....+|+||+|||++
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999998776667778889999999999999999999999999999
Q ss_pred CCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007367 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEI 497 (606)
Q Consensus 418 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~I 497 (606)
+.||+||+||||||++|+|++||.++|.+||+.|+++..+..++|++.||..|.||||+||+++|++|++.|.++++..|
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~I 411 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQV 411 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 007367 498 SKDEISDALERIIAG 512 (606)
Q Consensus 498 t~edl~~Al~ri~~g 512 (606)
+.+||.+|++++..+
T Consensus 412 t~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 412 TAEDFKQAKERVMKN 426 (437)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCC
Confidence 999999999998754
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-50 Score=440.89 Aligned_cols=256 Identities=43% Similarity=0.735 Sum_probs=244.6
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 346789999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
++|+|++++.++.+|..|+..+||||||||+|.++.+|+....+.......++++||.+||++....+|+||+|||+++.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 99999999999999999999999999999999999999876666677788899999999999999999999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~ 499 (606)
||++|+||||||++|+|++||.++|.+||+.|+++..+..++|+..||+.|.||||+||.++|++|++.|.++++..|+.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~ 440 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 440 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccc
Q 007367 500 DEISDALERIIAGPEKK 516 (606)
Q Consensus 500 edl~~Al~ri~~g~e~~ 516 (606)
+||.+|+++++.+.++.
T Consensus 441 ~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 441 KDFLKAVDKVISGYKKF 457 (467)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhcCcccc
Confidence 99999999999876654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-50 Score=435.20 Aligned_cols=252 Identities=41% Similarity=0.712 Sum_probs=241.6
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 456789999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
++|+|+++..++.+|..|+..+||||||||||+++.+|..+....+.+...++++||.+||++....+|+||+|||+|+.
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 99999999999999999999999999999999999998776666677788999999999999999999999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~ 499 (606)
||++|+||||||+.|+|++||.++|.+||+.|+++..+..++|+..++..|.||||+||.++|++|++.|.++++..|+.
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~ 412 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINP 412 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 007367 500 DEISDALERIIAG 512 (606)
Q Consensus 500 edl~~Al~ri~~g 512 (606)
+||.+|++++...
T Consensus 413 ~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 413 DDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998653
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-50 Score=437.29 Aligned_cols=252 Identities=41% Similarity=0.694 Sum_probs=240.6
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 456789999999999999999997775 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
++|+|.+++.++.+|..|+..+||||||||+|.++.+|..+..++..+...++++||.+||++....+|+||+|||+|+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999998776666677888999999999999999999999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~ 499 (606)
||+||+||||||+.|+|++||.++|.+||+.|+++..+..++|+..||+.|.||||+||.++|++|++.|.+++...|+.
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~ 412 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKH 412 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 007367 500 DEISDALERIIAG 512 (606)
Q Consensus 500 edl~~Al~ri~~g 512 (606)
+||.+|++++...
T Consensus 413 ~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 413 EDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHHHSCSSS
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-49 Score=428.27 Aligned_cols=251 Identities=38% Similarity=0.631 Sum_probs=240.4
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|..+|+|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 456789999999999999999998886 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
+.|+|.++..++.+|..|+..+||||||||+|.++.+|.....+++.+..+++++||.+||++....+|+||+|||+++.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999999777667777888999999999999999999999999999999
Q ss_pred ccccccCCCccccccccC-CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 007367 420 LDSALLRPGRFDRQVTVD-RPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS 498 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~-~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It 498 (606)
||++|+||||||+.|+|+ +|+.++|..||+.|+++..+..++|++.||..|.||||+||.++|++|++.|.++++..|+
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~ 403 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVIL 403 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 999999999999999996 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 007367 499 KDEISDALERIIA 511 (606)
Q Consensus 499 ~edl~~Al~ri~~ 511 (606)
.+||++|+.+.+.
T Consensus 404 ~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 404 QSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988754
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-44 Score=418.35 Aligned_cols=249 Identities=41% Similarity=0.761 Sum_probs=193.1
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..++++|+||+|++++|++|++.+.+ +++|+.|.++|..+|+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 34679999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
+|+|++++.++.+|+.|+..+||||||||||.++.+|+...+.++...++++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999987655555667778999999999999998999999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCC------
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL------ 494 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~------ 494 (606)
|++++||||||++|+|++||.++|.+||+.++++.++..++|+..|++.|+||||+||.++|++|++.|.++..
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~ 709 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 709 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988631
Q ss_pred -------------------CCCCHHHHHHHHHHHH
Q 007367 495 -------------------KEISKDEISDALERII 510 (606)
Q Consensus 495 -------------------~~It~edl~~Al~ri~ 510 (606)
..|+++||++|+.++.
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 744 (806)
T 3cf2_A 710 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744 (806)
T ss_dssp ------------------CCC----CCTTTC----
T ss_pred hhhhccCccccccccccccCccCHHHHHHHHHhCC
Confidence 1467777777776654
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-41 Score=393.17 Aligned_cols=246 Identities=42% Similarity=0.707 Sum_probs=229.4
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
.+.++|+||+|++++|++|++++.+ +++|+.|..+|.++|+|||||||||||||+|||++|++++.+|+.++++++.+.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4579999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
|.|+++..++.+|+.|+..+||||||||||.|+++|+.. .++...+++++||.+||++..+.+|+||++||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 999999999999999999999999999999999888653 23455789999999999998888999999999999999
Q ss_pred ccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCC-------
Q 007367 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL------- 494 (606)
Q Consensus 422 ~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~------- 494 (606)
++|+||||||+.|++++||.++|.+||+.|+++..+..++|+..+|..|+||+++||.++|++|++.|.++..
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~ 434 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987631
Q ss_pred ----------CCCCHHHHHHHHHHHHc
Q 007367 495 ----------KEISKDEISDALERIIA 511 (606)
Q Consensus 495 ----------~~It~edl~~Al~ri~~ 511 (606)
..++.+|+..|+..+..
T Consensus 435 ~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp CCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred cccchhhhccceeeHHHHHHHHHhCCC
Confidence 24678899999877654
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.7e-39 Score=327.24 Aligned_cols=253 Identities=66% Similarity=1.059 Sum_probs=231.8
Q ss_pred cCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
...+..+|+||+|++++|++|.+++.++.+++.|..+|...|+++||+||||||||++|+++|++++.|++.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
.+.+.+...++.+|+.+....|+++||||+|.+...++....++..+....++++|..++++....+++||++||+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 88888889999999999999999999999999998877665566677778999999999998888889999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~e 500 (606)
|++++|+|||++.+.++.|+.++|.+|++.++++..+..+.++..++..+.||+++||.++|++|...|.+++...|+.+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 243 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 243 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHcCC
Q 007367 501 EISDALERIIAGP 513 (606)
Q Consensus 501 dl~~Al~ri~~g~ 513 (606)
|+.+|++++..|+
T Consensus 244 ~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 244 EFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988765
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.4e-38 Score=327.93 Aligned_cols=248 Identities=42% Similarity=0.767 Sum_probs=223.8
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..+.++|+||+|++++|++|++.+.+ ++.++.|..+|..+++++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 34678999999999999999999886 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
.+.|.....++.+|+.++...|+||||||+|.+...++.............+++||..|+++....+++||++||+++.|
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999998775433322333456789999999998877889999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCC------
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL------ 494 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~------ 494 (606)
|++++|+|||+..+++++|+.++|.+|++.++++.++..++++..++..+.||+|+||.++|++|+..|.++..
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999988888889999999999999999999999999998876421
Q ss_pred -------------------CCCCHHHHHHHHHHH
Q 007367 495 -------------------KEISKDEISDALERI 509 (606)
Q Consensus 495 -------------------~~It~edl~~Al~ri 509 (606)
..|+.+||.+|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTC
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 357888888888764
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.1e-37 Score=315.50 Aligned_cols=250 Identities=46% Similarity=0.790 Sum_probs=234.7
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..+.++|+||+|+++++++|.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45678999999999999999998875 89999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
.+.|.....++.+|..++...|+||||||+|.+..++.....++..+.+..+..++..++++....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 89999999999999999999999999999999998877665556777888999999999988888899999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~e 500 (606)
|++++|++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.|++++||.++|++|...|.+++...|+.+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~ 249 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMD 249 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 007367 501 EISDALERIIA 511 (606)
Q Consensus 501 dl~~Al~ri~~ 511 (606)
|+.+|++++..
T Consensus 250 d~~~al~~~~~ 260 (285)
T 3h4m_A 250 DFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=315.97 Aligned_cols=256 Identities=52% Similarity=0.869 Sum_probs=204.6
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhh
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G 344 (606)
+++|+||+|++++|+.|++++.++..++.|..+|...|+++||+||||||||++|+++|++++.+++.++++++.+.+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCC-CCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcccc
Q 007367 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLG-GGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSA 423 (606)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~-~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~a 423 (606)
.+...++.+|+.+....|+||||||+|.+..+++.... ..+.+.+..++.++.++++.....+++||++||.++.+|++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 88889999999999999999999999999876643221 12344567889999999988777889999999999999999
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCccc--HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Q 007367 424 LLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD--FEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501 (606)
Q Consensus 424 LlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd--l~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~ed 501 (606)
++|+|||+..++++.|+.++|.+|++.+++..++..+.+ +..++..+.|++++||.++|++|+..|.+++...|+.+|
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d 241 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCC
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 999999999999999999999999999998776654443 478999999999999999999999999998888999999
Q ss_pred HHHHHHHHHcCCccccccc
Q 007367 502 ISDALERIIAGPEKKNAVV 520 (606)
Q Consensus 502 l~~Al~ri~~g~e~~~~~~ 520 (606)
+.+|++++..+.+++...+
T Consensus 242 ~~~a~~~~~~~~~~~~~~~ 260 (262)
T 2qz4_A 242 FEYAVERVLAGTAKKSKIL 260 (262)
T ss_dssp HHHHHHHHHHHHHCC----
T ss_pred HHHHHHHhccChhhhhHhh
Confidence 9999999987765554433
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.5e-38 Score=320.41 Aligned_cols=246 Identities=40% Similarity=0.704 Sum_probs=207.9
Q ss_pred CCCccccccccchHHHHHHHHHHH-HhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVD-FLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~-~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
.+.++|+||+|++++|++|++.+. .+.+++.|..++..+|+|++|+||||||||+|++++|++++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 357899999999999999998654 5999999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
+.+.....++.+|+.++...||++|+||+|.+...++... .......+++++.+|++......++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 8888888999999999888999999999999876654311 1122357899999999988888899999999999999
Q ss_pred ccccCCCccccccccCCCCHHHHHHHHHHHhcC---CCCCCcccHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhC---
Q 007367 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG---KALAKDVDFEKISRRTP--GFTGADLQNLMNEAAILAARRD--- 493 (606)
Q Consensus 422 ~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~---~~l~~dvdl~~La~~t~--G~SgaDL~~Lv~eA~~~A~rr~--- 493 (606)
++++||||||+.|++++|+.++|.+||+.++++ ..+..++|+..++..+. ||||+||.++|++|+..|.++.
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 34567889999999754 9999999999999999998752
Q ss_pred --------CCCCCHHHHHHHHHHHHc
Q 007367 494 --------LKEISKDEISDALERIIA 511 (606)
Q Consensus 494 --------~~~It~edl~~Al~ri~~ 511 (606)
...|+.+||++|++++.+
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcC
Confidence 236999999999987654
No 16
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=4e-36 Score=302.12 Aligned_cols=245 Identities=66% Similarity=1.113 Sum_probs=220.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
..+.++|+||+|+++++.++++++..+.++..+..++...|+|++|+||||||||+|+++++++.+.+++.+++.++...
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 45678999999999999999999999888999999999999999999999999999999999999999999999998887
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
+.+.....++.+|+.+....|+++||||+|.++..++.+......+..+.+++++.+|++......++++++||+|+.||
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld 168 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 168 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCC
Confidence 77877888999999998888999999999999877654333445677788999999999888777899999999999999
Q ss_pred ccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Q 007367 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501 (606)
Q Consensus 422 ~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~ed 501 (606)
++++|++||++.++++.|+.++|.+||+.++++..+..++++..++..+.|++++||.++|++|+..|.+++...|+.+|
T Consensus 169 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~d 248 (254)
T 1ixz_A 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 248 (254)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHH
Confidence 99999999999999999999999999999998888888889999999999999999999999999999998888999999
Q ss_pred HHHHH
Q 007367 502 ISDAL 506 (606)
Q Consensus 502 l~~Al 506 (606)
+++|+
T Consensus 249 l~~a~ 253 (254)
T 1ixz_A 249 LEEAA 253 (254)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
No 17
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=7.4e-36 Score=304.90 Aligned_cols=260 Identities=63% Similarity=1.073 Sum_probs=223.9
Q ss_pred CCCcccccccccccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 007367 246 GGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 246 ~~~~~~~~~k~~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
+..+.|.+++..... ..+.++|+||+|++++++++++++..+..+..+..++...|+|++|+||||||||+|+++++++
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 18 DSAFSFTKSRARVLT-EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp --------CCCCCBC-CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccccccccccc-CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 345566655554433 3378999999999999999999999998999999999999999999999999999999999999
Q ss_pred cCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCC
Q 007367 326 AGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN 405 (606)
Q Consensus 326 ~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~ 405 (606)
.+.+++.+++.++.+.+.+.....++.+|+.+....|+++||||+|.++..+.........+....+++++.+|++....
T Consensus 97 ~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 97 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp TTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred cCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 99999999999988877777788899999999888899999999999987654333334566788899999999988777
Q ss_pred CcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHH
Q 007367 406 SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEA 485 (606)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA 485 (606)
..++++++||+|+.||++++|++||++.++++.|+.++|.+||+.++++..+..++++..++..+.|++++||+++|++|
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999888888888999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHH
Q 007367 486 AILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 486 ~~~A~rr~~~~It~edl~~Al 506 (606)
+..|.+++...|+.+|+++|+
T Consensus 257 ~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHhCCCCcCHHHHHHHh
Confidence 999999888899999999875
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.6e-36 Score=312.31 Aligned_cols=225 Identities=36% Similarity=0.633 Sum_probs=203.2
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCeeeechhhHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASEFV 339 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi~vs~se~~ 339 (606)
..++++|+||+|++++|+.|++.+.+ ++.++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 34678999999999999999998876 888888764 35677999999999999999999999999 8999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-CCCcEEEEEeeCCCC
Q 007367 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPD 418 (606)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-~~~~ViVIaaTN~p~ 418 (606)
..|.|.....++.+|..++..+|+||||||||.+..+++.. ........+++||..|+++. ...+++||++||+++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999998877543 34556788999999999985 367899999999999
Q ss_pred CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007367 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 419 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
.+|++++| ||+..+++++|+.++|.+||+.++++.... .+.++..|++.+.||+|+||.++|++|+..|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999877654 6778999999999999999999999999998876
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=6.5e-36 Score=312.29 Aligned_cols=226 Identities=36% Similarity=0.625 Sum_probs=200.3
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..++++|+||+|++++|+.|++.+.+ ++.++.+.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 45678999999999999999998876 777777765 5677899999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-CCCcEEEEEeeCCCCC
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPDV 419 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-~~~~ViVIaaTN~p~~ 419 (606)
.+.|.....++.+|..++...|+||||||||.+..+++.+ ........+++|+..|+++. ...+++||++||+++.
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 9999999999999999999999999999999998776543 23344678899999999884 5668999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~ 493 (606)
||++++| ||+..+++++|+.++|.+||+.++++.... .+.++..|+..+.||+++||.++|++|...+.++.
T Consensus 167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999877654 67789999999999999999999999999998863
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=2.7e-37 Score=312.37 Aligned_cols=251 Identities=64% Similarity=1.038 Sum_probs=219.4
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
..+.++|+||+|++++++.|++++.++..++.|..+|...|+++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCC-CCCCChhHHHHHHHHHHHhccCCC-CCcEEEEEeeCCCCC
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAG-LGGGNDEREQTINQLLTEMDGFSG-NSGVIVLAATNRPDV 419 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~-~~~~~~e~~~~Ln~LL~eld~~~~-~~~ViVIaaTN~p~~ 419 (606)
+.|.+...++.+|+.+....|+||||||+|.+...+..+ ....+....+.+++|+..+++... ..+++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 888888888899999999899999999999998765321 111223334567888888887754 345899999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~ 499 (606)
+|++++|+|||+..++++.|+.++|.+||+.++++..+..+.++..++..+.|++++||.++|++|...|..++...|+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~ 243 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 243 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCH
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCH
Confidence 99999999999999999999999999999999988887788889999999999999999999999999998887789999
Q ss_pred HHHHHHHHHHHcC
Q 007367 500 DEISDALERIIAG 512 (606)
Q Consensus 500 edl~~Al~ri~~g 512 (606)
+++.++++++...
T Consensus 244 ~~~~~a~~~~~~~ 256 (268)
T 2r62_A 244 QHLKEAVERGIAG 256 (268)
T ss_dssp HHHHTSCTTCCCC
T ss_pred HHHHHHHHHHhhc
Confidence 9999998876544
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=9.2e-35 Score=308.40 Aligned_cols=225 Identities=36% Similarity=0.633 Sum_probs=195.0
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..++++|+||+|++++++.|++.+.+ ++.++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 45678999999999999999998876 788888876 6678899999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC-CCcEEEEEeeCCCCC
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-NSGVIVLAATNRPDV 419 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~-~~~ViVIaaTN~p~~ 419 (606)
.+.|.....++.+|..++...|+||||||||.+...++.+ .......++++||..|+++.. ..+++||++||+++.
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 9999999999999999999999999999999998776542 344567788999999998854 567999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..|+..+.||+++||.++|++|++.|.++
T Consensus 200 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 200 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp SCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999877653 6778999999999999999999999999999876
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.8e-34 Score=318.73 Aligned_cols=243 Identities=43% Similarity=0.726 Sum_probs=222.1
Q ss_pred CCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~ 342 (606)
..++|+||+|+++++++|++.+.. +++++.|..+|...|+++||+||||||||++|++++++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 457899999999999999998886 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccc
Q 007367 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (606)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~ 422 (606)
.|.....++.+|+.+....|+||||||||.+..+++. ...+....++++||..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~---~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS---CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc---ccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 9999999999999999999999999999999887643 2345567889999999999888889999999999999999
Q ss_pred cccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCC-------
Q 007367 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK------- 495 (606)
Q Consensus 423 aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~------- 495 (606)
+++|+|||++.++++.|+.++|.+||+.++++..+..+.++..++..+.||+++||.++|++|+..+.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999988888899999999999999999999999999999988654
Q ss_pred ----------CCCHHHHHHHHHHH
Q 007367 496 ----------EISKDEISDALERI 509 (606)
Q Consensus 496 ----------~It~edl~~Al~ri 509 (606)
.|+.+|+..|+..+
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~ 459 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQS 459 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSH
T ss_pred ccchhhcccCcCCHHHHHHHHHhC
Confidence 35666666666543
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.5e-33 Score=305.91 Aligned_cols=226 Identities=36% Similarity=0.637 Sum_probs=193.3
Q ss_pred cCCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCeeeechhhH
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASEF 338 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi~vs~se~ 338 (606)
...++++|+||+|++++++.|++.+.+ ++.++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 446789999999999999999998865 777777653 34677999999999999999999999999 899999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC-CCcEEEEEeeCCC
Q 007367 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-NSGVIVLAATNRP 417 (606)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~-~~~ViVIaaTN~p 417 (606)
...|.|.....++.+|..++...|+||||||||.+...++.. ........+++||..|+++.. ..+++||++||++
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~ 281 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 281 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCc
Confidence 999999999999999999999999999999999998776543 344556789999999998753 5789999999999
Q ss_pred CCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007367 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 418 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
+.||++++| ||+..+++++|+.++|.+||+.++.+.+.. .+.++..|+..+.||+|+||.++|++|+..+.++
T Consensus 282 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 282 WVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999876653 6778999999999999999999999999998875
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=283.66 Aligned_cols=243 Identities=33% Similarity=0.595 Sum_probs=209.8
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
.++++|+||+|++++++.|++.+.+ +..++.|...+ ..++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3568999999999999999998876 77888776654 678999999999999999999999999999999999999998
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--CCCcEEEEEeeCCCCC
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--GNSGVIVLAATNRPDV 419 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--~~~~ViVIaaTN~p~~ 419 (606)
+.|.....++.+|..++...|+||||||||.+...++. +.+......+++||..+++.. ...+++||++||+++.
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 89988999999999999999999999999999876643 224456678899999999865 3467999999999999
Q ss_pred ccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC-----
Q 007367 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD----- 493 (606)
Q Consensus 420 LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~----- 493 (606)
||++++| ||+..+++++|+.++|.+|++.+++..... .+.++..++..+.||+++||..+|++|...+.++.
T Consensus 234 l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~ 311 (357)
T 3d8b_A 234 IDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI 311 (357)
T ss_dssp BCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---
T ss_pred CCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999 999999999999999999999998765443 45678999999999999999999999999988753
Q ss_pred -------CCCCCHHHHHHHHHHHHc
Q 007367 494 -------LKEISKDEISDALERIIA 511 (606)
Q Consensus 494 -------~~~It~edl~~Al~ri~~ 511 (606)
...|+.+||..|+.++..
T Consensus 312 ~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 312 ATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp -------CCCBCHHHHHHHHHHHGG
T ss_pred ccccccccCCcCHHHHHHHHHhcCC
Confidence 257999999999998764
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=6e-32 Score=277.09 Aligned_cols=242 Identities=38% Similarity=0.604 Sum_probs=205.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..++++|+||+|++++++.|++.+.. +.+++.|..++ .+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 34678999999999999999998875 67777776654 45789999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCC---CcEEEEEeeCCC
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN---SGVIVLAATNRP 417 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~---~~ViVIaaTN~p 417 (606)
.+.+.+...++.+|..+....|+||||||+|.+...++... .+......+.|+..+++.... .+++||++||++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 88888888999999999999999999999999987664322 222356778899998887543 569999999999
Q ss_pred CCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCC--
Q 007367 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL-- 494 (606)
Q Consensus 418 ~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~-- 494 (606)
+.+|+++++ ||+..+++++|+.++|..|++.++++.+.. .+.++..++..+.|++++||.++|++|...+.++..
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999998765442 455689999999999999999999999999988742
Q ss_pred ----------CCCCHHHHHHHHHHH
Q 007367 495 ----------KEISKDEISDALERI 509 (606)
Q Consensus 495 ----------~~It~edl~~Al~ri 509 (606)
..|+.+|+..|+.++
T Consensus 248 ~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 248 QVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp ------CCCCCCCCHHHHHHHTTSC
T ss_pred hcccccccccCCcCHHHHHHHHHHc
Confidence 469999999988754
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=5.9e-31 Score=281.61 Aligned_cols=243 Identities=36% Similarity=0.616 Sum_probs=200.0
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
...+++|+||+|++.+++.|.+.+.. +..++.|..++ ..++++||+||||||||++|+++|.+++.+|+.++|+++..
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34578999999999999999998875 66777776665 45789999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC--CCcEEEEEeeCCCC
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG--NSGVIVLAATNRPD 418 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~--~~~ViVIaaTN~p~ 418 (606)
.+.|.....++.+|..++...|+||||||||.+...+..+ ........++.|+..++++.. ..+++||++||+++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 9999999999999999999999999999999997765432 234456788899999998754 46799999999999
Q ss_pred CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh-----
Q 007367 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR----- 492 (606)
Q Consensus 419 ~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr----- 492 (606)
.||++++| ||+..++++.|+.++|.+||+.++...+.. .+.++..++..+.|+++++|..+|++|...+.++
T Consensus 264 ~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~ 341 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQ 341 (389)
T ss_dssp GCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-
T ss_pred hcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999 999999999999999999999998765443 4557899999999999999999999999999887
Q ss_pred -------CCCCCCHHHHHHHHHHHH
Q 007367 493 -------DLKEISKDEISDALERII 510 (606)
Q Consensus 493 -------~~~~It~edl~~Al~ri~ 510 (606)
....|+.+||..++.++.
T Consensus 342 ~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 342 VKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp --CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhccchhhcCCcCHHHHHHHHHHcC
Confidence 235789999999998753
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=3.5e-34 Score=333.58 Aligned_cols=232 Identities=43% Similarity=0.787 Sum_probs=206.2
Q ss_pred CCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..+.++|+|++|++++|+.|.+.+.+ ++.++.|..++..++.++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 45678999999999999999998886 78888999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
.|+|.....++.+|+.++...||||||||||.+...++...+........++++||.+||++....+++||+|||+++.|
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999988776433333345678899999999999888899999999999999
Q ss_pred cccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhC
Q 007367 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (606)
Q Consensus 421 D~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~ 493 (606)
|++++|||||++.|+++.|+.++|.+||+.++++..+..++++..+++.+.|||++||.++|++|...|.++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888889999999999999999999999999999998875
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=6.2e-31 Score=271.86 Aligned_cols=230 Identities=19% Similarity=0.254 Sum_probs=161.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHH----HcCCCeEEEEccccc
Q 007367 297 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKA----KSKAPCIVFIDEIDA 372 (606)
Q Consensus 297 lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A----~~~aP~ILfIDEID~ 372 (606)
.+.+.|+++|||||||||||++|+++|++++.+|+.++++++.+.+.|.....++.+|+.+ +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3668899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHHhccCC-----------CCCcEEEEEeeCCCCCccccccCCCccccccccCCCCH
Q 007367 373 VGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441 (606)
Q Consensus 373 L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-----------~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~ 441 (606)
++.+++.. .......+.+.+.|+..||+.. ...+++||+|||+++.||++++|+|||++.++ .|+.
T Consensus 111 ~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~ 187 (293)
T 3t15_A 111 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred hcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence 98754321 1112234456788888887432 45679999999999999999999999999887 4799
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCc
Q 007367 442 AGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNL-------MNEAAILAARRDLKEISKDEISDALERIIAGPE 514 (606)
Q Consensus 442 ~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~L-------v~eA~~~A~rr~~~~It~edl~~Al~ri~~g~e 514 (606)
++|.+|++.++... +++...++..+.||++++|..+ +.++.....++ +..+.+.. +++...
T Consensus 188 ~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~----~g~~~~~~---~~~~~~- 255 (293)
T 3t15_A 188 EDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSG----TGIEKIGD---KLLNSF- 255 (293)
T ss_dssp HHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHH----TCSTTCHH---HHTSCS-
T ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHH---HHHcCC-
Confidence 99999999888643 4568889999999999888642 11111111111 11111111 122221
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhh
Q 007367 515 KKNAVVSDEKKKLVAYHEAGHALVGAL 541 (606)
Q Consensus 515 ~~~~~~s~~~~~~~A~hEaGhAlv~~l 541 (606)
.....+.+.+..+.++||+||+++...
T Consensus 256 ~~~~~~~~~~~~~~~l~~~g~~~~~eq 282 (293)
T 3t15_A 256 DGPPTFEQPKMTIEKLLEYGNMLVQEQ 282 (293)
T ss_dssp SCSCCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 122334455677889999999998753
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=4.3e-28 Score=282.42 Aligned_cols=244 Identities=43% Similarity=0.720 Sum_probs=220.7
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
...++|+||+|+++++++|++.+.. +++++.|..++...+.++||+||||||||++|+++|++++.+++.+++.++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4568999999999999999999986 999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD 421 (606)
+.+.....++.+|+.+....|+++||||+|.+..+++. ...+.....+++|+..++++.....+++|++||+++.+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 88999999999999999999999999999999877643 234455678899999999998888999999999999999
Q ss_pred ccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCC------
Q 007367 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK------ 495 (606)
Q Consensus 422 ~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~------ 495 (606)
+++.+++||++.+.++.|+.++|.+|++.++++..+..+.++..++..+.||+++|+..++.+|...+.++...
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99999999999999999999999999999999988888889999999999999999999999999988876433
Q ss_pred -----------CCCHHHHHHHHHHH
Q 007367 496 -----------EISKDEISDALERI 509 (606)
Q Consensus 496 -----------~It~edl~~Al~ri 509 (606)
.++.+++..++...
T Consensus 435 ~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 435 ETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred hccchhhhhhhhhhhhhhhcccccc
Confidence 34556666666654
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=2.2e-26 Score=251.60 Aligned_cols=205 Identities=22% Similarity=0.310 Sum_probs=146.7
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCeeeechhhHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVE 340 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g--~pfi~vs~se~~~ 340 (606)
.+...|++|+|++++++.+.+++..++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4456799999999999999998887654 445678999999999999999999999999 9999999999999
Q ss_pred HHhhhhhHHHHHHHHHH---HcCCCeEEEEccccchhhccCCCCCCCChh-HH---------------HHHHHHHHHhc-
Q 007367 341 LFVGVGASRVRDLFEKA---KSKAPCIVFIDEIDAVGRQRGAGLGGGNDE-RE---------------QTINQLLTEMD- 400 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A---~~~aP~ILfIDEID~L~~~r~~~~~~~~~e-~~---------------~~Ln~LL~eld- 400 (606)
.+.|.... ++++|..+ +...||||||||+|.++.+|+....++... .. ...++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 778899999999999998876532211110 00 11234566665
Q ss_pred -cCCCCCcEEEEEeeCCCCCccccccCCCcccc--ccccCCCC--HHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCH
Q 007367 401 -GFSGNSGVIVLAATNRPDVLDSALLRPGRFDR--QVTVDRPD--VAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTG 475 (606)
Q Consensus 401 -~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~--~I~v~~Pd--~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~Sg 475 (606)
+......++|+++||+++.+|+++.|+||||+ .+.++.|+ .++|.+|++.+.. .|++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 33444456667999999999999999999999 66777774 4778888775552 268899999999 9
Q ss_pred HHHHHHHHH
Q 007367 476 ADLQNLMNE 484 (606)
Q Consensus 476 aDL~~Lv~e 484 (606)
+||.++|+.
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999965
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.89 E-value=2.3e-23 Score=213.92 Aligned_cols=225 Identities=18% Similarity=0.226 Sum_probs=173.5
Q ss_pred ccc-ccccchHHHHHHHHHHHHhcCchhhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhc-------CCCeeeech
Q 007367 267 TFA-DVAGADQAKLELQEVVDFLKNPDKYTALGAKI---PKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCAA 335 (606)
Q Consensus 267 tf~-DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~---p~gVLL~GPPGTGKT~LArAIA~e~-------g~pfi~vs~ 335 (606)
.++ +|+|++++|+.|.+++..+..+..+...|... +.++||+||||||||++|+++|+++ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 455 79999999999999999876677777777554 4479999999999999999999987 348999999
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 336 SEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 336 se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
+++...+.|.....++.+|..+. ++||||||+|.+...++. .......++.|+..|+.. ..++++|++||
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~ 177 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGY 177 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEEC
T ss_pred HHhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCC
Confidence 99988888888888889998873 569999999999754432 122356778888888853 45678899998
Q ss_pred CCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHh-------CCCCCHHHHHHHH
Q 007367 416 RPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRR-------TPGFTGADLQNLM 482 (606)
Q Consensus 416 ~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~La~~-------t~G~SgaDL~~Lv 482 (606)
..+ .++++|++ ||+.+++|+.|+.+++.+|++.+++..++.-+. .+..++.. ....+++++.+++
T Consensus 178 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 178 ADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp HHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 654 25799999 999999999999999999999998765543222 34555554 3345799999999
Q ss_pred HHHHHHHHHh----CCCCCCHHHHH
Q 007367 483 NEAAILAARR----DLKEISKDEIS 503 (606)
Q Consensus 483 ~eA~~~A~rr----~~~~It~edl~ 503 (606)
+.+...+..+ ....++.+++.
T Consensus 256 ~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 256 DRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHh
Confidence 9998776655 33556666654
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=2.1e-22 Score=211.71 Aligned_cols=221 Identities=21% Similarity=0.309 Sum_probs=166.4
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CeeeechhhHHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASEFVEL 341 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~se~~~~ 341 (606)
+..+|++++|++.+++.+..+...+... ..+++++||+||||||||++|+++|++++. ||+.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4456999999999999988888776543 234579999999999999999999999874 8888877653211
Q ss_pred -------------------------------------------------HhhhhhHHHHHHHHHHHc-----C----CCe
Q 007367 342 -------------------------------------------------FVGVGASRVRDLFEKAKS-----K----APC 363 (606)
Q Consensus 342 -------------------------------------------------~~G~~~~~vr~lF~~A~~-----~----aP~ 363 (606)
..|.....++..|..+.. + .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 111224456666655443 1 278
Q ss_pred EEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEee-----------CCCCCccccccCCCcccc
Q 007367 364 IVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT-----------NRPDVLDSALLRPGRFDR 432 (606)
Q Consensus 364 ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaT-----------N~p~~LD~aLlRpgRFd~ 432 (606)
||||||+|.+.. ..++.|+..++... ..++++++. |.+..++++|++ ||..
T Consensus 192 vl~IDEi~~l~~--------------~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHMLDI--------------ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp EEEEESGGGSBH--------------HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred eEEEhhccccCh--------------HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 999999999832 35666777776432 245555543 347789999999 8866
Q ss_pred ccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 433 QVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 433 ~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
+.+++|+.+++.+|++.++...+.. .+..+..+++.+.+.+++++.++++.|...|..++...|+.+++.++++...
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 8999999999999999888654433 3334778888888569999999999999999999999999999999998643
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=6.9e-21 Score=198.33 Aligned_cols=217 Identities=21% Similarity=0.226 Sum_probs=167.6
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
...+.+|+|++|.+.+++.+.+.+...+.. ...+.++||+||||||||++|++++++++.+|+.++|..+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc--
Confidence 344568999999999999999888764321 23466899999999999999999999999999999987653
Q ss_pred HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC----------------C
Q 007367 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG----------------N 405 (606)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~----------------~ 405 (606)
....+...+.. ...+++|||||||.+.. ...+.|+..++.... .
T Consensus 93 ----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 93 ----KSGDLAAILTN--LSEGDILFIDEIHRLSP--------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp ----SHHHHHHHHHT--CCTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred ----chhHHHHHHHh--ccCCCEEEEechhhcCH--------------HHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 12233333432 34568999999999832 244455555554320 1
Q ss_pred CcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHH
Q 007367 406 SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNE 484 (606)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~e 484 (606)
.++++|++||+...++++|++ ||+.++.++.|+.+++.++++.++...+.. .+..+..++..+ +.+++++.++++.
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS-RSTPRIALRLLKR 229 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT-TTCHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 248999999999999999999 999999999999999999999888765543 233466777754 4589999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 485 AAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 485 A~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
+...+...+...|+.+++..++....
T Consensus 230 ~~~~a~~~~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 230 VRDFADVNDEEIITEKRANEALNSLG 255 (338)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCccCHHHHHHHHHHhC
Confidence 98888888888899999999988743
No 34
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=99.86 E-value=1.6e-22 Score=203.00 Aligned_cols=91 Identities=42% Similarity=0.628 Sum_probs=63.6
Q ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEeeCCCCCeeEEeccchhhhhccccCHHHHHHHHHHHh
Q 007367 511 AGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVAL 590 (606)
Q Consensus 511 ~g~e~~~~~~s~~~~~~~A~hEaGhAlv~~ll~~~~~v~~vsi~prg~a~G~~~~~p~e~~~~~~~~t~~~l~~~i~~~l 590 (606)
.|+++++..+++++++++||||+||||+++++++.+||+||||+|||+++|||++.|.++++ ++||++|+++|+++|
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~---~~tk~~l~~~i~v~L 78 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKH---IYDKKDLYNKILVLL 78 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CC---CCBHHHHHHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCccccc---ccCHHHHHHHHHHHH
Confidence 57888888999999999999999999999999999999999999999999999999988764 789999999999999
Q ss_pred hhHHHHHHHh--cccc
Q 007367 591 GGRLVNLSFL--DAWE 604 (606)
Q Consensus 591 gGr~AE~~~~--~~~~ 604 (606)
||||||+++| |..+
T Consensus 79 gGRaAEelifG~g~vt 94 (238)
T 2di4_A 79 GGRAAEEVFFGKDGIT 94 (238)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHhCCCCcc
Confidence 9999999999 6655
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=3.7e-20 Score=191.02 Aligned_cols=219 Identities=21% Similarity=0.277 Sum_probs=163.0
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHh
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~ 343 (606)
.+.+|++++|.+.+++.+.+.+...... ...+.++||+||||||||++|++++++++.+|+.++|+.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 4568999999999999998887754321 134578999999999999999999999999999999876532
Q ss_pred hhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc--C---C--------CCCcEEE
Q 007367 344 GVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG--F---S--------GNSGVIV 410 (606)
Q Consensus 344 G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~--~---~--------~~~~ViV 410 (606)
...+...|..+ ...+++|||||+|.+. ...+..+..++..... + . ...++++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 11222222221 1457899999999983 2223333333333210 0 0 1135789
Q ss_pred EEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007367 411 LAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 411 IaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
|++||.+..++++|.+ ||+.++.++.|+.+++.++++.++...+.. .+..+..++..+.| +++++.++++.+...+
T Consensus 142 i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 9999999999999998 998899999999999999999988765543 23346778888754 7899999999988777
Q ss_pred HHhCCCCCCHHHHHHHHHHHH
Q 007367 490 ARRDLKEISKDEISDALERII 510 (606)
Q Consensus 490 ~rr~~~~It~edl~~Al~ri~ 510 (606)
...+...|+.+++..++....
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALG 239 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHT
T ss_pred HHhcCCCCCHHHHHHHHHHhc
Confidence 666677899999999887753
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=1.1e-20 Score=193.00 Aligned_cols=237 Identities=26% Similarity=0.349 Sum_probs=163.7
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH-HHhhh
Q 007367 269 ADVAGADQAKLELQEVVDF-LKNPDKYTAL-GAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVGV 345 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~l-G~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~-~~~G~ 345 (606)
++|+|++++++.|...+.. +........+ +...|.++||+||||||||++|+++++.++.+++.++|+++.+ .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3599999999999887654 2221111111 1245789999999999999999999999999999999998865 45543
Q ss_pred h-hHHHHHHHHHH-----HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--------CCCcEEEE
Q 007367 346 G-ASRVRDLFEKA-----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVL 411 (606)
Q Consensus 346 ~-~~~vr~lF~~A-----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--------~~~~ViVI 411 (606)
. ...+++++..+ ....++||||||+|.+...... .+.....+.+.+.|+..+++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 2 34466666532 1123579999999999765432 1122233445777888887531 23467888
Q ss_pred Eee----CCCCCccccccCCCccccccccCCCCHHHHHHHHHHHh-----------cCCCC---CCcccHHHHHHhCC--
Q 007367 412 AAT----NRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS-----------RGKAL---AKDVDFEKISRRTP-- 471 (606)
Q Consensus 412 aaT----N~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l-----------~~~~l---~~dvdl~~La~~t~-- 471 (606)
+++ +.+..++++|++ ||+.++.|++|+.+++.+|++..+ ...+. ..+..++.|++...
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 884 567789999998 999889999999999999998311 11121 12333566666652
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHhCC-----C-CCCHHHHHHHHHHH
Q 007367 472 -----GFTGADLQNLMNEAAILAARRDL-----K-EISKDEISDALERI 509 (606)
Q Consensus 472 -----G~SgaDL~~Lv~eA~~~A~rr~~-----~-~It~edl~~Al~ri 509 (606)
+.+.+++.++++.+...+..+.. . .|+.+++.+++...
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 56899999999998755443321 1 49999999887654
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=2.3e-20 Score=189.28 Aligned_cols=221 Identities=19% Similarity=0.245 Sum_probs=151.8
Q ss_pred ccccccchHHHHHHHHH----HHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH-HHH
Q 007367 268 FADVAGADQAKLELQEV----VDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV-ELF 342 (606)
Q Consensus 268 f~DI~G~d~~K~eL~ei----v~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~-~~~ 342 (606)
...++|.++..+.+.+. +..++ ..+...+.++||+||||||||++|+++|++.+.+|+.+++++.. ...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCc
Confidence 45688998887666663 33332 22346678999999999999999999999999999999886521 111
Q ss_pred hhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-CCCcEEEEEeeCCCCCcc
Q 007367 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPDVLD 421 (606)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-~~~~ViVIaaTN~p~~LD 421 (606)
.+.....++.+|+.+....++||||||||.+...+..+ .......++.|+..+++.. ...+++||++||.++.++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc
Confidence 12233567889999988889999999999997654321 1223455666666677654 345688999999999888
Q ss_pred c-cccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCC----CHHHHHHHHHHHHHHHHHhCCCC
Q 007367 422 S-ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGF----TGADLQNLMNEAAILAARRDLKE 496 (606)
Q Consensus 422 ~-aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~----SgaDL~~Lv~eA~~~A~rr~~~~ 496 (606)
+ .+.+ ||+..+.++.++. |.+|.+...+...+ .+.++..+++.+.|+ +.+++.++++.|...+ ..
T Consensus 182 ~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~ 251 (272)
T 1d2n_A 182 EMEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PE 251 (272)
T ss_dssp HTTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GG
T ss_pred hhhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hH
Confidence 7 5555 9988888855544 44444444333333 455688899999887 6888888887764322 23
Q ss_pred CCHHHHHHHHHH
Q 007367 497 ISKDEISDALER 508 (606)
Q Consensus 497 It~edl~~Al~r 508 (606)
...+++..+++.
T Consensus 252 ~~~~~~~~~l~~ 263 (272)
T 1d2n_A 252 YRVRKFLALLRE 263 (272)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555443
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.81 E-value=1.2e-19 Score=191.86 Aligned_cols=221 Identities=23% Similarity=0.291 Sum_probs=154.4
Q ss_pred cccchHHHHHHHHHHHH-hcCchhh-h-hcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH-HHhhhh
Q 007367 271 VAGADQAKLELQEVVDF-LKNPDKY-T-ALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVGVG 346 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~~-Lk~p~~~-~-~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~-~~~G~~ 346 (606)
|+|++++++.|...+.. ++..... . ......+.++||+||||||||++|+++|+.++.||+.++|+++.. .|.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 69999999999987742 2111100 0 011235679999999999999999999999999999999998875 377765
Q ss_pred -hHHHHHHHHHH----HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC------------------
Q 007367 347 -ASRVRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS------------------ 403 (606)
Q Consensus 347 -~~~vr~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~------------------ 403 (606)
...++.+|..+ ....++||||||||.+...++....+.+...+.+++.||..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55677777765 3345689999999999877655443344445558899999998431
Q ss_pred -CCCcEEEEEeeCCC----------CC-----------------------------------ccccccCCCccccccccC
Q 007367 404 -GNSGVIVLAATNRP----------DV-----------------------------------LDSALLRPGRFDRQVTVD 437 (606)
Q Consensus 404 -~~~~ViVIaaTN~p----------~~-----------------------------------LD~aLlRpgRFd~~I~v~ 437 (606)
..+++++|+++|.. .. ++++|+. ||+.++.+.
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 22345666666642 11 5777877 999999999
Q ss_pred CCCHHHHHHHHHH----Hh-------cCCCCC---CcccHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhC
Q 007367 438 RPDVAGRVKILQV----HS-------RGKALA---KDVDFEKISR--RTPGFTGADLQNLMNEAAILAARRD 493 (606)
Q Consensus 438 ~Pd~~eR~~IL~~----~l-------~~~~l~---~dvdl~~La~--~t~G~SgaDL~~Lv~eA~~~A~rr~ 493 (606)
+|+.+++.+|++. .+ ...+.. .+..++.|+. ....+..++|+++++++...+..+.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999999885 21 111221 2223556664 3455678999999999988777654
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.81 E-value=3.1e-19 Score=194.49 Aligned_cols=222 Identities=16% Similarity=0.237 Sum_probs=155.5
Q ss_pred CCccccccc-cchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007367 264 TGVTFADVA-GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (606)
Q Consensus 264 ~~~tf~DI~-G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se 337 (606)
+..+|++++ |..... .+..+......+. . +.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 100 ~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp TTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 456899988 644332 2333333333321 2 5689999999999999999999988 88999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
+...+.+.........|.......++||||||+|.+..+ ...+. .|+..++.+...+..+||++.+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~---~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQT---ELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHH---HHHHHHHHHHTTTCEEEEEESSCG
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHH---HHHHHHHHHHHCCCeEEEEECCCH
Confidence 876655443322223344444336789999999998532 12223 333443333334445666655555
Q ss_pred CC---ccccccCCCccc--cccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 007367 418 DV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAAR 491 (606)
Q Consensus 418 ~~---LD~aLlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~r 491 (606)
.. ++++|++ ||. .++.+++|+.++|.+|++..+...++. .+..+..|+..+.| +.+++.++++.+...+..
T Consensus 239 ~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 239 QKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKET 315 (440)
T ss_dssp GGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 54 7899999 886 789999999999999999887643332 22236788888875 999999999999988876
Q ss_pred hCCCCCCHHHHHHHHHHHH
Q 007367 492 RDLKEISKDEISDALERII 510 (606)
Q Consensus 492 r~~~~It~edl~~Al~ri~ 510 (606)
.+ ..|+.+++.+++....
T Consensus 316 ~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 316 TG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp SS-SCCCHHHHHHHTSTTT
T ss_pred hC-CCCCHHHHHHHHHHHh
Confidence 66 4699999999988765
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=4.5e-20 Score=206.23 Aligned_cols=226 Identities=21% Similarity=0.287 Sum_probs=153.2
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH----
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE---- 340 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~---- 340 (606)
..-.+|++|++++++.+.+.+..-.... .. .+..+||+||||||||++|+++|+.++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 3456789999999999987655311000 01 3557999999999999999999999999999999876543
Q ss_pred -----HHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCC----------
Q 007367 341 -----LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN---------- 405 (606)
Q Consensus 341 -----~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~---------- 405 (606)
.|.|.....+...|..+....| ||||||||.+...+. ....+.||..||.....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCee
Confidence 4566666777788888766665 999999999965432 12456677777643211
Q ss_pred ---CcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHh-----cCCCCC------CcccHHHHHH-hC
Q 007367 406 ---SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS-----RGKALA------KDVDFEKISR-RT 470 (606)
Q Consensus 406 ---~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l-----~~~~l~------~dvdl~~La~-~t 470 (606)
.++++|+|||+++.++++|++ ||+ +|.++.|+.+++.+|++.++ +..++. .+..+..++. .+
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred ecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 568999999999999999999 995 79999999999999999876 222221 1223455555 44
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh------CCCCCCHHHHHHHHHHHH
Q 007367 471 PGFTGADLQNLMNEAAILAARR------DLKEISKDEISDALERII 510 (606)
Q Consensus 471 ~G~SgaDL~~Lv~eA~~~A~rr------~~~~It~edl~~Al~ri~ 510 (606)
.....++|++.+..++..+..+ ....|+.+++.+++....
T Consensus 297 ~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 297 REAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCC
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcc
Confidence 4456777777666665555443 234689999998886543
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.80 E-value=7.9e-19 Score=183.90 Aligned_cols=225 Identities=17% Similarity=0.171 Sum_probs=162.3
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechh
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAAS 336 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~s 336 (606)
..+++++|.++.++.|.+.+..... ...+.+++|+||||||||++++++++++ +.++++++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4558999999997777665543211 2346789999999999999999999988 8899999986
Q ss_pred hHHH------HHh----------hhhhHH-HHHHHHHHHc-CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHH
Q 007367 337 EFVE------LFV----------GVGASR-VRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (606)
Q Consensus 337 e~~~------~~~----------G~~~~~-vr~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~e 398 (606)
...+ ... +..... ...+++.... ..|++|||||+|.+...+ ..+..+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 4221 111 111222 3444444433 448899999999995431 135677778887
Q ss_pred hccCCCCCcEEEEEeeCCC---CCccccccCCCcccc-ccccCCCCHHHHHHHHHHHhcC----CCCCCcccHHHHHHhC
Q 007367 399 MDGFSGNSGVIVLAATNRP---DVLDSALLRPGRFDR-QVTVDRPDVAGRVKILQVHSRG----KALAKDVDFEKISRRT 470 (606)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd~-~I~v~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~La~~t 470 (606)
++......++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.++.. ..+ .+..+..+++.+
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~ 235 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALA 235 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHH
Confidence 7654324578899999987 678899998 8875 8999999999999999988753 222 233356677666
Q ss_pred C--CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 471 P--GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 471 ~--G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
. ..+++.+.++++.|...+..++...|+.+++.+++....
T Consensus 236 ~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 236 AREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5 137899999999999988888888999999999987653
No 42
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=1.8e-20 Score=203.95 Aligned_cols=169 Identities=24% Similarity=0.316 Sum_probs=81.8
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhcCCC-CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH-HHhhh
Q 007367 269 ADVAGADQAKLELQEVVDF-LKNPDKYTALGAK-IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVGV 345 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~-Lk~p~~~~~lG~~-~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~-~~~G~ 345 (606)
++|+|++++|+.|...+.. ++.+..+..++.. .|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 3699999999999887754 4444444444333 5789999999999999999999999999999999999988 58885
Q ss_pred -hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe-eCCCCCcccc
Q 007367 346 -GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA-TNRPDVLDSA 423 (606)
Q Consensus 346 -~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa-TN~p~~LD~a 423 (606)
....++.+|+.+... +++||+|.+.... .....++++++||.+||++.....+ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788899999998765 4589988874322 1233468999999999999776554 455 9999999999
Q ss_pred ccCCCccccccccCCCCHH-HHHHHHH
Q 007367 424 LLRPGRFDRQVTVDRPDVA-GRVKILQ 449 (606)
Q Consensus 424 LlRpgRFd~~I~v~~Pd~~-eR~~IL~ 449 (606)
|+|+||||+.|++++|+.. .|.+|+.
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ---------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhc
Confidence 9999999999999999987 7888764
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.79 E-value=6.3e-19 Score=182.67 Aligned_cols=208 Identities=18% Similarity=0.209 Sum_probs=142.2
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se 337 (606)
.+..+..+.+|+|++|++++++.|++.+.. ...|..+|++||||||||++|++++++++.+++++++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 444556678999999999999888877762 245677899999999999999999999999999999876
Q ss_pred HHHHHhhhhhHHHHHHHHHHHc-----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 007367 338 FVELFVGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIa 412 (606)
.. ...++..+..... ..++||||||+|.+.. . ...+.|+..++... .++.+|+
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~---~~~~~L~~~le~~~--~~~~iI~ 141 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------A---ESQRHLRSFMEAYS--SNCSIII 141 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------H---HHHHHHHHHHHHHG--GGCEEEE
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------H---HHHHHHHHHHHhCC--CCcEEEE
Confidence 42 2334444443322 2568999999999941 1 23445555555332 4578888
Q ss_pred eeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHh-------cCCCCC-Cc-ccHHHHHHhCCCCCHHHHHHHHH
Q 007367 413 ATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS-------RGKALA-KD-VDFEKISRRTPGFTGADLQNLMN 483 (606)
Q Consensus 413 aTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l-------~~~~l~-~d-vdl~~La~~t~G~SgaDL~~Lv~ 483 (606)
+||.+..+++++++ ||. ++.|+.|+.++|.+|++.+. ...++. .+ ..+..++..+.| +.+++.+.++
T Consensus 142 ~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~ 217 (324)
T 3u61_B 142 TANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELD 217 (324)
T ss_dssp EESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHH
T ss_pred EeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 99999999999999 884 79999999999877655432 222222 23 446778887665 6666767766
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH
Q 007367 484 EAAILAARRDLKEISKDEISDALER 508 (606)
Q Consensus 484 eA~~~A~rr~~~~It~edl~~Al~r 508 (606)
.++ ....|+.+++.+++..
T Consensus 218 ~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 218 SYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHG------GGTCBCC---------
T ss_pred HHh------ccCCCCHHHHHHHhCC
Confidence 654 2245888887766543
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.1e-17 Score=160.34 Aligned_cols=202 Identities=21% Similarity=0.205 Sum_probs=146.1
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhh
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se 337 (606)
..+.+|++++|.++.++.|.+.+..- .+.+++|+||||||||++++++++++ ..+++.+++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 45678999999999988887766431 12349999999999999999999875 45677777754
Q ss_pred HHHHHhhhhhHHHHHHHHHHH------cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 007367 338 FVELFVGVGASRVRDLFEKAK------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVI 411 (606)
... ...++..+.... ...+++|||||+|.+.. . ..+.|+..++.. ..++.+|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~---~~~~l~~~l~~~--~~~~~~i 136 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------D---AQAALRRTMEMY--SKSCRFI 136 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------H---HHHHHHHHHHHT--TTTEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------H---HHHHHHHHHHhc--CCCCeEE
Confidence 322 112222222222 24678999999999832 2 234455555532 3467888
Q ss_pred EeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 412 AATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 412 aaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
++||.++.+++++.+ ||. .+.+++|+.+++.++++.++...+.. .+..+..++..+.| +.+.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 899999999999998 887 89999999999999999887543332 23346777777654 8888888888876553
Q ss_pred HhCCCCCCHHHHHHHHH
Q 007367 491 RRDLKEISKDEISDALE 507 (606)
Q Consensus 491 rr~~~~It~edl~~Al~ 507 (606)
+.|+.+++++++.
T Consensus 212 ----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----EVVDADTIYQITA 224 (226)
T ss_dssp ----SCBCHHHHHHHHH
T ss_pred ----ceecHHHHHHHhc
Confidence 6899999998875
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.77 E-value=3.4e-18 Score=177.50 Aligned_cols=219 Identities=17% Similarity=0.248 Sum_probs=148.5
Q ss_pred CCccccccc-cch--HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh
Q 007367 264 TGVTFADVA-GAD--QAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (606)
Q Consensus 264 ~~~tf~DI~-G~d--~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se 337 (606)
+..+|++++ |.. .+...++.++ ..+. ..+.+++|+||||||||++|+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~---~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEAL---ENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHH---HTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHH---hCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 457899997 533 3333333333 2221 235689999999999999999999988 89999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
+...+.+.........|..... .+++|||||+|.+..+ ...++.+..++..+ ......+|+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~---~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTL---YLLEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC---------HHHHHHHHHHHHHH---HHTTCEEEEEESSCG
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC---------hHHHHHHHHHHHHH---HHCCCeEEEEecCCh
Confidence 8776655433222233333332 3689999999998432 12233333333332 223446777777776
Q ss_pred C---CccccccCCCccc--cccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHH---
Q 007367 418 D---VLDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAIL--- 488 (606)
Q Consensus 418 ~---~LD~aLlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~--- 488 (606)
. .++++|.+ ||+ .++.+++ +.+++.+|++.++...++. .+..++.++..+ .+.+++.++++.+...
T Consensus 143 ~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~ 217 (324)
T 1l8q_A 143 QKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFE 217 (324)
T ss_dssp GGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHH
Confidence 6 68899998 886 6789999 9999999999988654443 233477888888 5899999999988765
Q ss_pred HHH-hCCCCC-CHHHHHHHHHHHH
Q 007367 489 AAR-RDLKEI-SKDEISDALERII 510 (606)
Q Consensus 489 A~r-r~~~~I-t~edl~~Al~ri~ 510 (606)
+.. .....| +.+++.+++....
T Consensus 218 ~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 218 GLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCHHHHHHHHHHHh
Confidence 100 122457 8888888877643
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.76 E-value=2e-18 Score=188.69 Aligned_cols=205 Identities=20% Similarity=0.251 Sum_probs=149.1
Q ss_pred CCccccccccchHHH---HHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 264 TGVTFADVAGADQAK---LELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K---~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
.+.+|+|++|+++++ ..|...+..- ...++||+||||||||++|++|++.++.+|+.+++...
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 356899999999998 5565555431 12579999999999999999999999999999987532
Q ss_pred HHhhhhhHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEee--
Q 007367 341 LFVGVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT-- 414 (606)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaT-- 414 (606)
+...++.+|+.+. ...++||||||||.+... ..+.||..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCC
Confidence 3344566666554 346789999999998432 23456666663 446777766
Q ss_pred CCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCC-------CC-CCcccHHHHHHhCCCCCHHHHHHHHHHHH
Q 007367 415 NRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK-------AL-AKDVDFEKISRRTPGFTGADLQNLMNEAA 486 (606)
Q Consensus 415 N~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~-------~l-~~dvdl~~La~~t~G~SgaDL~~Lv~eA~ 486 (606)
|....++++|++ |+. ++.++.|+.+++..+++..+... .+ ..+..++.|+..+. .+.+++.++++.+.
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~-Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVN-GDARRALNTLEMMA 219 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHC-SCHHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 344578999999 775 78899999999999999888652 11 12334677777755 58999999999998
Q ss_pred HHHHHh--CCCCCCHHHHHHHHHHH
Q 007367 487 ILAARR--DLKEISKDEISDALERI 509 (606)
Q Consensus 487 ~~A~rr--~~~~It~edl~~Al~ri 509 (606)
..+... +...|+.+++.+++.+.
T Consensus 220 ~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 220 DMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HhcccccCCCCccCHHHHHHHHhhh
Confidence 776422 34579999998887643
No 47
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.76 E-value=9.1e-18 Score=176.66 Aligned_cols=215 Identities=19% Similarity=0.249 Sum_probs=156.2
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----------CCCeeeec
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----------GVPFFSCA 334 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----------g~pfi~vs 334 (606)
...++++|.++.+++|.+.+..... ...+++++|+||||||||++|+++++++ +.++++++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 3458999999999988887764322 1346789999999999999999999987 89999999
Q ss_pred hhhHH-H------HHh-----------hhh-hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHH-HHH
Q 007367 335 ASEFV-E------LFV-----------GVG-ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQT-INQ 394 (606)
Q Consensus 335 ~se~~-~------~~~-----------G~~-~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~-Ln~ 394 (606)
|.+.. . ... +.. ...+..+++.+.... +||||||+|.+..... ... +..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~----------~~~~l~~ 157 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG----------GDIVLYQ 157 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT----------SHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC----------CceeHHH
Confidence 87643 1 111 111 122444444444443 4999999999964321 123 444
Q ss_pred HHHHhccCCCCCcEEEEEeeCCC---CCccccccCCCccccccccCCCCHHHHHHHHHHHhcC----CCCCCcccHHHHH
Q 007367 395 LLTEMDGFSGNSGVIVLAATNRP---DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG----KALAKDVDFEKIS 467 (606)
Q Consensus 395 LL~eld~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~La 467 (606)
|+... .++.+|++||.+ +.+++.+.+ ||...+.+++|+.+++.+|++.+++. ..+ .+..+..++
T Consensus 158 l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~ 228 (384)
T 2qby_B 158 LLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIA 228 (384)
T ss_dssp HHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHH
T ss_pred HhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHH
Confidence 44433 578999999987 678999988 88889999999999999999988753 222 233456677
Q ss_pred HhCC--CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 468 RRTP--GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 468 ~~t~--G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
+.+. ..+.+.+.++++.|...|. +...|+.+++.+++++..
T Consensus 229 ~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 229 AISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 7665 1477888899999988775 557899999999988764
No 48
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=2.6e-18 Score=190.58 Aligned_cols=229 Identities=18% Similarity=0.261 Sum_probs=149.5
Q ss_pred cccccCCCCccccccccchHHHHHHHHHHHHhc--CchhhhhcCC---CCCceEEEEcCCCChHHHHHHHHHHhcCCCee
Q 007367 257 KFQEVPETGVTFADVAGADQAKLELQEVVDFLK--NPDKYTALGA---KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (606)
Q Consensus 257 ~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk--~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi 331 (606)
..+..+..+.+|+||+|+++++++|.+.+.... .+..+...|. ..++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 455556677899999999999998888776422 1222333333 35689999999999999999999999999999
Q ss_pred eechhhHHHHHhhhhh-------HHHHHHHHHH-----HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 332 SCAASEFVELFVGVGA-------SRVRDLFEKA-----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 332 ~vs~se~~~~~~G~~~-------~~vr~lF~~A-----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
+++++++......... ..++.+|..+ ....++||||||+|.+.... +..++.|+..+
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l 175 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFC 175 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHHHHH
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHHHHH
Confidence 9999876543221110 1133344444 23567899999999995421 12344555555
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL 478 (606)
+. ....+++|+++.....++ .+. |+...+.|+.|+.+++.++++..+...++. .+..+..|++.+.| +.+++
T Consensus 176 ~~--~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~ 248 (516)
T 1sxj_A 176 RK--TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQV 248 (516)
T ss_dssp HH--CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHH
T ss_pred Hh--cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 43 223355555444434444 344 445689999999999999998776443322 23347888888765 56666
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDALER 508 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al~r 508 (606)
.++++.++ . +...|+.+++.+++..
T Consensus 249 i~~L~~~~---~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 249 INLLSTIS---T--TTKTINHENINEISKA 273 (516)
T ss_dssp HHHHTHHH---H--HSSCCCTTHHHHHHHH
T ss_pred HHHHHHHH---h--cCCCCchHHHHHHHHh
Confidence 66665443 2 2356888887776653
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.75 E-value=1.2e-17 Score=173.90 Aligned_cols=217 Identities=20% Similarity=0.270 Sum_probs=140.0
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------Ce------
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------PF------ 330 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~-------pf------ 330 (606)
++.+|++++|++.+++.+.... + .+ .+.++||+||||||||++|+++++.++. +|
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 4678999999999876543221 1 11 1346999999999999999999998862 32
Q ss_pred --------------------eeechhhHHHHHhhhhhHHHHHHHHHH---------HcCCCeEEEEccccchhhccCCCC
Q 007367 331 --------------------FSCAASEFVELFVGVGASRVRDLFEKA---------KSKAPCIVFIDEIDAVGRQRGAGL 381 (606)
Q Consensus 331 --------------------i~vs~se~~~~~~G~~~~~vr~lF~~A---------~~~aP~ILfIDEID~L~~~r~~~~ 381 (606)
+.+........+.|. ..+...+... ....++||||||+|.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------ 158 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGA--LDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------ 158 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCE--ECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheee--chhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------
Confidence 111111001111111 0011111111 011357999999999832
Q ss_pred CCCChhHHHHHHHHHHHhcc----CCC-------CCcEEEEEeeCCCC-CccccccCCCccccccccCCC-CHHHHHHHH
Q 007367 382 GGGNDEREQTINQLLTEMDG----FSG-------NSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRP-DVAGRVKIL 448 (606)
Q Consensus 382 ~~~~~e~~~~Ln~LL~eld~----~~~-------~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~v~~P-d~~eR~~IL 448 (606)
. .++.|+..|+. +.. ..++++|++||..+ .++++|++ ||+.++.++.| +.+++.+|+
T Consensus 159 -----~---~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 159 -----H---IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp -----H---HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred -----H---HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 2 33445554442 111 13689999999754 89999999 99988999999 677777888
Q ss_pred HHHh-------------------------------cCCCCCCcccHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHhCC
Q 007367 449 QVHS-------------------------------RGKALAKDVDFEKISRRTPG---FTGADLQNLMNEAAILAARRDL 494 (606)
Q Consensus 449 ~~~l-------------------------------~~~~l~~dvdl~~La~~t~G---~SgaDL~~Lv~eA~~~A~rr~~ 494 (606)
+.++ +...+ .+..+..|+....+ .+.+.+.++++.|...|..++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~ 307 (350)
T 1g8p_A 229 RRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA 307 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 6531 11122 22234445544332 2679999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHc
Q 007367 495 KEISKDEISDALERIIA 511 (606)
Q Consensus 495 ~~It~edl~~Al~ri~~ 511 (606)
..|+.+|+.+++..++.
T Consensus 308 ~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 308 TAVGRDHLKRVATMALS 324 (350)
T ss_dssp SBCCHHHHHHHHHHHHG
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 89999999999988764
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.75 E-value=1.2e-17 Score=173.60 Aligned_cols=214 Identities=19% Similarity=0.144 Sum_probs=148.7
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH--HHHHhh
Q 007367 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF--VELFVG 344 (606)
Q Consensus 267 tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~--~~~~~G 344 (606)
.+++|+|++++++.+...+.. .+++||+||||||||++|+++|+.++.+++.+++... ...+.|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 567899999998777655432 2479999999999999999999999999998887311 111222
Q ss_pred hhhHH-HHHHHHHHHcCC---CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC---------CCCCcEEEE
Q 007367 345 VGASR-VRDLFEKAKSKA---PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF---------SGNSGVIVL 411 (606)
Q Consensus 345 ~~~~~-vr~lF~~A~~~a---P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~---------~~~~~ViVI 411 (606)
..... ....|. .... .+||||||+|.+.. ...+.|+..|+.. ..+.+++||
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~--------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPA--------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCCH--------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 11000 000000 0111 26999999999732 2344455555432 123467888
Q ss_pred EeeCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCC----------------------C-CcccH
Q 007367 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKAL----------------------A-KDVDF 463 (606)
Q Consensus 412 aaTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l----------------------~-~dvdl 463 (606)
+|+|..+ .+++++++ ||+.++.++.|+.+++.+|++.++..... . .+..+
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 232 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLE 232 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHH
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHH
Confidence 8988554 38999999 99889999999999999999988754211 0 11113
Q ss_pred HHHHHhC-------------------CCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007367 464 EKISRRT-------------------PGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAG 512 (606)
Q Consensus 464 ~~La~~t-------------------~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g 512 (606)
+.++... .|.|.+.+.++++.|...|..+++..|+.+|+.+++..++..
T Consensus 233 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 233 KYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 3333211 256899999999999999999999999999999999988753
No 51
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.75 E-value=8.8e-18 Score=164.24 Aligned_cols=206 Identities=16% Similarity=0.164 Sum_probs=139.4
Q ss_pred CCccccccccch---HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh
Q 007367 264 TGVTFADVAGAD---QAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (606)
Q Consensus 264 ~~~tf~DI~G~d---~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se 337 (606)
+..+|++++|.+ .+.+.+..++. . ..+.+++|+||||||||++|+++++++ +.+++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 347899999833 33333333322 1 135689999999999999999999876 47888999887
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcE-EEEEeeCC
Q 007367 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGV-IVLAATNR 416 (606)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~V-iVIaaTN~ 416 (606)
+...+... ++.. ..+.+|||||+|.+... ......+..++... .....+ +|+++++.
T Consensus 91 ~~~~~~~~--------~~~~--~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~---~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTAL--------LEGL--EQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRV---AEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGGG--------GTTG--GGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHH---HHHCSCEEEEEESSC
T ss_pred HHHHHHHH--------HHhc--cCCCEEEEeccccccCC---------HHHHHHHHHHHHHH---HHcCCCeEEEEcCCC
Confidence 66532211 1111 34679999999998431 11123333333332 222333 44555444
Q ss_pred CC---CccccccCCCccc--cccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 417 PD---VLDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 417 p~---~LD~aLlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
++ .+++.+.+ ||. .++.++.|+.+++.++++.+++..++. .+..++.++..+.| +.+++.++++.+...+.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 44 45678888 775 899999999999999999988654443 23346778888765 89999999999988876
Q ss_pred HhCCCCCCHHHHHHHHH
Q 007367 491 RRDLKEISKDEISDALE 507 (606)
Q Consensus 491 rr~~~~It~edl~~Al~ 507 (606)
.++ ..|+.+++++++.
T Consensus 226 ~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHT-CCCCHHHHHHHHT
T ss_pred HhC-CCCcHHHHHHHhh
Confidence 555 5699999988864
No 52
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.75 E-value=3.2e-17 Score=158.58 Aligned_cols=210 Identities=23% Similarity=0.274 Sum_probs=147.7
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee--ech----
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS--CAA---- 335 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~--vs~---- 335 (606)
+..+.+|++++|.+..++.|.+.+..- ..+..++|+||+|+|||+++++++++.+..... ..+
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 345668999999999988888776531 234579999999999999999999887442211 010
Q ss_pred --hhHHHH----H------hhhhhHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 336 --SEFVEL----F------VGVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 336 --se~~~~----~------~G~~~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
..+... + .......++.+++.+. ...+.+|||||+|.+.. ..++.|+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~--------------~~~~~l~~~l 150 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTL 150 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH--------------HHHHHHHHHH
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH--------------HHHHHHHHHH
Confidence 000000 0 0012233455555443 23578999999999831 3456667776
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHH
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL 478 (606)
+.. ..++.+|++||.+..+++.+.+ |+ ..+.+++++.++..++++.++...+.. .+..+..+++.+.| +++++
T Consensus 151 ~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~ 224 (250)
T 1njg_A 151 EEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDA 224 (250)
T ss_dssp HSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHH
T ss_pred hcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 643 4568899999998889999988 65 689999999999999999888654432 33346788888876 89999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
.++++.+... +...|+.+++++++
T Consensus 225 ~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 225 LSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHhc----cCceecHHHHHHHh
Confidence 9999988543 33579999998774
No 53
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=5.7e-17 Score=169.43 Aligned_cols=224 Identities=15% Similarity=0.192 Sum_probs=158.2
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------CCCeeeechhhH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA------GVPFFSCAASEF 338 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~------g~pfi~vs~se~ 338 (606)
...+++++|.++..+.|.+.+..... ...+..++|+||+|||||++++++++++ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 45668999999987777665432211 1346689999999999999999999988 889999998653
Q ss_pred HH------HHh----------hhhh-HHHHHHHHHHHcC-CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc
Q 007367 339 VE------LFV----------GVGA-SRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (606)
Q Consensus 339 ~~------~~~----------G~~~-~~vr~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld 400 (606)
.. ... +... .....+++..... .|+||||||+|.+....+ ...+..|+..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchh
Confidence 21 110 1111 2233444444443 389999999999965321 135667777776
Q ss_pred cCCCCCcEEEEEeeCCC---CCccccccCCCccc-cccccCCCCHHHHHHHHHHHhcC----CCCCCcccHHHHHHhCCC
Q 007367 401 GFSGNSGVIVLAATNRP---DVLDSALLRPGRFD-RQVTVDRPDVAGRVKILQVHSRG----KALAKDVDFEKISRRTPG 472 (606)
Q Consensus 401 ~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd-~~I~v~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~La~~t~G 472 (606)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++.. ..+ .+..+..++..+..
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL-PDNVIKLCAALAAR 233 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS-CHHHHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHH
Confidence 54 34578889999977 457788887 665 48999999999999999987642 222 22335556666551
Q ss_pred --CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 473 --FTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 473 --~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
.+++.+.+++..+...+..++...|+.+++.+++....
T Consensus 234 ~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 234 EHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 47888899999999988888888999999998887654
No 54
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.73 E-value=6.7e-18 Score=158.14 Aligned_cols=159 Identities=25% Similarity=0.383 Sum_probs=115.1
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs 334 (606)
+.+|++++|.++..+++.+. +.. ..+.++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~---l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQV---LQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHH---HTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHH---Hhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 45799999999876665544 332 235689999999999999999999986 78899999
Q ss_pred hhhHHH--HHhhhhhHHHHHHHHHHH-cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 007367 335 ASEFVE--LFVGVGASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (606)
Q Consensus 335 ~se~~~--~~~G~~~~~vr~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVI 411 (606)
+.++.. .+.+.....++.++..+. ...++||||||+|.+...+... ........+..++ + ..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~---~----~~~~~~i 155 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPAL---A----RGELHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHH---H----TTSCCEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhh---c----cCCeEEE
Confidence 988762 344555667777877664 4568899999999996543211 1112223333333 2 3457788
Q ss_pred EeeCCCC-----CccccccCCCccccccccCCCCHHHHHHHH
Q 007367 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKIL 448 (606)
Q Consensus 412 aaTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL 448 (606)
++||.++ .+++++++ ||+ .+.++.|+.++|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8888876 68999999 998 6999999999998876
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.73 E-value=1.3e-17 Score=176.87 Aligned_cols=235 Identities=23% Similarity=0.244 Sum_probs=144.9
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhh-----------------hhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee
Q 007367 270 DVAGADQAKLELQEVVDF-LKNPDKY-----------------TALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~-Lk~p~~~-----------------~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi 331 (606)
+|+|++++|+.|...+.. ++..... ..-....+.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999987631 2111100 0012335678999999999999999999999999999
Q ss_pred eechhhHH-HHHhhhh-hHHHHHHHHHHH----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--
Q 007367 332 SCAASEFV-ELFVGVG-ASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-- 403 (606)
Q Consensus 332 ~vs~se~~-~~~~G~~-~~~vr~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-- 403 (606)
.++|..+. ..+.|.. ...+..++..+. ...++||||||+|.+...++......+...+..++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 334555555432 235679999999999776433222222222346777888887531
Q ss_pred -----------------CCCcEEEEEeeCCC-----------------------------------------CCcccccc
Q 007367 404 -----------------GNSGVIVLAATNRP-----------------------------------------DVLDSALL 425 (606)
Q Consensus 404 -----------------~~~~ViVIaaTN~p-----------------------------------------~~LD~aLl 425 (606)
..+++++|+++|.. ..+.+.|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12456788888721 02345566
Q ss_pred CCCccccccccCCCCHHHHHHHHHH----H-------hc--CCCCC-CcccHHHHHHhCC--CCCHHHHHHHHHHHHHHH
Q 007367 426 RPGRFDRQVTVDRPDVAGRVKILQV----H-------SR--GKALA-KDVDFEKISRRTP--GFTGADLQNLMNEAAILA 489 (606)
Q Consensus 426 RpgRFd~~I~v~~Pd~~eR~~IL~~----~-------l~--~~~l~-~dvdl~~La~~t~--G~SgaDL~~Lv~eA~~~A 489 (606)
+ ||+.++.|++++.++..+|+.. + +. +..+. .+..+..|+.... ....++|.++++.+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 6 8888899999999999998862 1 11 11111 2223566666543 357899999999998877
Q ss_pred HHhCCC------CCCHHHHHHHH
Q 007367 490 ARRDLK------EISKDEISDAL 506 (606)
Q Consensus 490 ~rr~~~------~It~edl~~Al 506 (606)
..+... .|+.+++.++.
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTSS
T ss_pred HhhccCCCCCEEEEeHHHhcCCC
Confidence 664321 47888876543
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.71 E-value=4.4e-16 Score=163.22 Aligned_cols=214 Identities=22% Similarity=0.313 Sum_probs=157.1
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhh
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G 344 (606)
..+|++++|++.+++.+...+..-+.+ ...+..++|+||||||||+|++++|+++++++...++..+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~---- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK---- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS----
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC----
Confidence 448999999999888877766542211 134567999999999999999999999999887776654321
Q ss_pred hhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-------C---------CCcE
Q 007367 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-------G---------NSGV 408 (606)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-------~---------~~~V 408 (606)
...+..++.. ....+|+||||+|.+.. ..+..+ +..++... . -..+
T Consensus 90 --~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 --QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp --HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHH---HHHHHTSCCCC---------------CCC
T ss_pred --HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHH---HHHHHhcccceeeccCcccccccccCCCe
Confidence 1123333332 23457999999999842 122222 33332221 0 0236
Q ss_pred EEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007367 409 IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGADLQNLMNEAAI 487 (606)
Q Consensus 409 iVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~La~~t~G~SgaDL~~Lv~eA~~ 487 (606)
.++++|+++..|++.+++ ||...+.+++|+.+++.+|++...+..+... +..+..++.++.| +++++.++++.+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 777899999999999999 9988899999999999999998876544433 2336778888776 78999999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH
Q 007367 488 LAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 488 ~A~rr~~~~It~edl~~Al~ri~ 510 (606)
.|..++...|+.+++.++++...
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC
Confidence 88888878899999999999864
No 57
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=7.7e-17 Score=167.63 Aligned_cols=212 Identities=19% Similarity=0.165 Sum_probs=149.9
Q ss_pred ccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC------CCee
Q 007367 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG------VPFF 331 (606)
Q Consensus 258 ~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g------~pfi 331 (606)
.+..+..+.+|++++|++++++.|...+. .. . +.++||+||||||||++|++++++++ ..++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLK---SA--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---CT--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHh---cC--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 34445667899999999999877765543 21 1 23499999999999999999999854 4577
Q ss_pred eechhhHHHHHhhhhhHHHHHHHHHHH----------------cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHH
Q 007367 332 SCAASEFVELFVGVGASRVRDLFEKAK----------------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (606)
Q Consensus 332 ~vs~se~~~~~~G~~~~~vr~lF~~A~----------------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~L 395 (606)
.+++++... ...+++.+.... ...+.||||||+|.+.. ...+.|
T Consensus 94 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------~~~~~L 153 (353)
T 1sxj_D 94 ELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------DAQSAL 153 (353)
T ss_dssp EECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------HHHHHH
T ss_pred EEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------HHHHHH
Confidence 777765311 111121111111 13456999999999842 234556
Q ss_pred HHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCC
Q 007367 396 LTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFT 474 (606)
Q Consensus 396 L~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~S 474 (606)
+..|+... ....+|.+||.++.+++++++ |+. .+.+++|+.++..++++..+...++. .+..+..++..+.| +
T Consensus 154 l~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~ 227 (353)
T 1sxj_D 154 RRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-D 227 (353)
T ss_dssp HHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-C
T ss_pred HHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 66666433 345677788999999999998 875 88999999999999999887655443 33447788888875 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 007367 475 GADLQNLMNEAAILAARRDLK-EISKDEISDALE 507 (606)
Q Consensus 475 gaDL~~Lv~eA~~~A~rr~~~-~It~edl~~Al~ 507 (606)
.+.+.++++.+...+.+.+.. .|+.+++.+++.
T Consensus 228 ~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 228 LRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 888888888887776655433 799999987765
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=4.8e-17 Score=187.89 Aligned_cols=222 Identities=19% Similarity=0.270 Sum_probs=158.7
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs 334 (606)
+-+|++++|.++..+.+.+++ .. ..+.++||+||||||||++|+++++++ +..++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l---~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVL---CR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHH---hc---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 357999999998866655443 22 235689999999999999999999976 55677777
Q ss_pred hhhHH--HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 007367 335 ASEFV--ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (606)
Q Consensus 335 ~se~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIa 412 (606)
+..+. ..+.|....+++.+|+.+....++||||||+|.+.+.++. ........+.|...+ ....+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-----~~~~~~~~~~L~~~l----~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA-----SGGQVDAANLIKPLL----SSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS-----SSCHHHHHHHHSSCS----SSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC-----CcchHHHHHHHHHHH----hCCCeEEEE
Confidence 77665 3466777888999999998888899999999999765322 111222333333223 356788999
Q ss_pred eeCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcC----CCC-CCcccHHHHHHhCC-----CCCHHH
Q 007367 413 ATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG----KAL-AKDVDFEKISRRTP-----GFTGAD 477 (606)
Q Consensus 413 aTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~----~~l-~~dvdl~~La~~t~-----G~SgaD 477 (606)
+||.++ .+|++|.| ||+ .+.|+.|+.++|.+||+.+... ..+ ..+..+..++..+. .+.+..
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 998653 57899999 998 7999999999999999876643 111 12223455554433 356778
Q ss_pred HHHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHH
Q 007367 478 LQNLMNEAAILAAR----RDLKEISKDEISDALERII 510 (606)
Q Consensus 478 L~~Lv~eA~~~A~r----r~~~~It~edl~~Al~ri~ 510 (606)
+..++++|...+.. .....++.+|+.+++.+..
T Consensus 398 ~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 88999998766655 2356799999999998865
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=4.3e-17 Score=167.08 Aligned_cols=203 Identities=18% Similarity=0.251 Sum_probs=138.0
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH-----
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----- 340 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~----- 340 (606)
++++|++.+++.+...+......-.+ ..++..++||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSC---TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCC---CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 46899999999998877653210000 01233479999999999999999999987 56799999876532
Q ss_pred HHhhhh-----hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--C-------CC
Q 007367 341 LFVGVG-----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--G-------NS 406 (606)
Q Consensus 341 ~~~G~~-----~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--~-------~~ 406 (606)
.+.|.. ......+.........+||||||+|.+.. ..++.|+..|+... . -.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP--------------DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH--------------HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 222210 00001223333344458999999999832 34555666555321 1 13
Q ss_pred cEEEEEeeCC--------------------------CCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCC-----
Q 007367 407 GVIVLAATNR--------------------------PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK----- 455 (606)
Q Consensus 407 ~ViVIaaTN~--------------------------p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~----- 455 (606)
++++|+|||. ...++++|++ ||+..+.+.+|+.+++.+|++.++++.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998 3467888887 999999999999999999999876431
Q ss_pred ----CC-CCcccHHHHHHhCC--CCCHHHHHHHHHHHHHHHH
Q 007367 456 ----AL-AKDVDFEKISRRTP--GFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 456 ----~l-~~dvdl~~La~~t~--G~SgaDL~~Lv~eA~~~A~ 490 (606)
.+ ..+..+..|+.... .++.++|+++++++...+.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 11 12233667777666 6789999999998876543
No 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.70 E-value=2.8e-16 Score=165.05 Aligned_cols=222 Identities=12% Similarity=0.106 Sum_probs=159.6
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCc--eEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhHH
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK--GCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFV 339 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~--gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~~ 339 (606)
..+++++|.++..+.|.+.+...... ..+. +++|+||||||||++++++++++ +.++++++|....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 45589999999988888877642111 2234 79999999999999999999988 6788998875432
Q ss_pred ------HHHh----------hhhhHHH-HHHHHHHH-cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhcc
Q 007367 340 ------ELFV----------GVGASRV-RDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (606)
Q Consensus 340 ------~~~~----------G~~~~~v-r~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~ 401 (606)
.... +.....+ ..+.+... ...|.||||||+|.+. ...+..|+..++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQE 151 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHHh
Confidence 1111 1011111 22222222 2558899999999981 2456667777664
Q ss_pred CCC--CCcEEEEEeeCCC---CCccccccCCCcccc-ccccCCCCHHHHHHHHHHHhcC---CCCCCcccHHHHHHhCC-
Q 007367 402 FSG--NSGVIVLAATNRP---DVLDSALLRPGRFDR-QVTVDRPDVAGRVKILQVHSRG---KALAKDVDFEKISRRTP- 471 (606)
Q Consensus 402 ~~~--~~~ViVIaaTN~p---~~LD~aLlRpgRFd~-~I~v~~Pd~~eR~~IL~~~l~~---~~l~~dvdl~~La~~t~- 471 (606)
... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. .....+..+..+++.+.
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA 229 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence 432 2478899999988 567888877 7775 7999999999999999987753 12223445677888884
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007367 472 -------GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (606)
Q Consensus 472 -------G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~ 511 (606)
+..++.+.++++.|...+..++...|+.+++.+++.....
T Consensus 230 ~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 230 QTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp SSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 3478999999999999998888889999999999887643
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.70 E-value=7.3e-17 Score=177.05 Aligned_cols=207 Identities=22% Similarity=0.325 Sum_probs=142.8
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeee
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSC 333 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~v 333 (606)
.+-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|+.+
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 345799999999997777665542 224578999999999999999999986 7889999
Q ss_pred chhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 334 AASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 334 s~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
+++ ..+.|....+++.+|+.+....++||||| +. ....+.|+..|+ ...+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-------------~~a~~~L~~~L~----~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-------------hhHHHHHHHhhc----CCCEEEEec
Confidence 987 66778778889999999998889999999 10 013344444444 457899999
Q ss_pred eCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCC----CCC-CcccHHHHHHhCCC-----CCHHHH
Q 007367 414 TNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK----ALA-KDVDFEKISRRTPG-----FTGADL 478 (606)
Q Consensus 414 TN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~----~l~-~dvdl~~La~~t~G-----~SgaDL 478 (606)
||.++ .+|++++| ||. .|.|+.|+.+++.+||+.++... ++. .+..+..++..+.+ +.+...
T Consensus 298 t~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~a 374 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (468)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHH
Confidence 99987 68999999 997 59999999999999999877552 221 22334555544333 445678
Q ss_pred HHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 007367 479 QNLMNEAAILAARRDL-KEISKDEISDALERII 510 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~~-~~It~edl~~Al~ri~ 510 (606)
..++.+|...+..+.. .....+++++.++++.
T Consensus 375 i~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 375 IDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVR 407 (468)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 8888888776655543 3445566666666543
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.70 E-value=1.2e-16 Score=163.32 Aligned_cols=203 Identities=21% Similarity=0.208 Sum_probs=144.0
Q ss_pred cCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeech
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAA 335 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~ 335 (606)
.+..+.+|+|++|++++++.|.+.+. . ...| ++||+||||||||++|+++++++ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34567789999999999877765443 2 1223 39999999999999999999986 346778887
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHH------cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEE
Q 007367 336 SEFVELFVGVGASRVRDLFEKAK------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVI 409 (606)
Q Consensus 336 se~~~~~~G~~~~~vr~lF~~A~------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~Vi 409 (606)
++... ...+++.+.... ...+.||||||+|.+.. ...+.|+..++.. ..+++
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~ 134 (319)
T 2chq_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCR 134 (319)
T ss_dssp TSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--SSSEE
T ss_pred ccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCe
Confidence 65321 112222222221 24478999999999832 2455666666643 35678
Q ss_pred EEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007367 410 VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAIL 488 (606)
Q Consensus 410 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~ 488 (606)
+|++||.+..+++++.+ |+. .+.+++|+.+++.++++.++++.++. .+..+..++..+. .+.+.+.++++.+...
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~-G~~r~~~~~l~~~~~~ 210 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISG-GDFRKAINALQGAAAI 210 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTT-TCHHHHHHHHHHHHHS
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHc
Confidence 88999999999999999 775 89999999999999999888766554 2334666776665 4777777777765432
Q ss_pred HHHhCCCCCCHHHHHHHH
Q 007367 489 AARRDLKEISKDEISDAL 506 (606)
Q Consensus 489 A~rr~~~~It~edl~~Al 506 (606)
...|+.+++.+.+
T Consensus 211 -----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 -----GEVVDADTIYQIT 223 (319)
T ss_dssp -----SSCBCHHHHHHHT
T ss_pred -----CCCCCHHHHHHHH
Confidence 3468888876654
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.67 E-value=1.1e-15 Score=159.98 Aligned_cols=209 Identities=23% Similarity=0.300 Sum_probs=147.5
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe--eeechh---h
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF--FSCAAS---E 337 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf--i~vs~s---e 337 (606)
..+.+|++++|++++++.|.+.+.. .+.+..+||+||+|||||++|+++++.++... ....|. .
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4456899999999999888877653 13456789999999999999999999875421 111111 1
Q ss_pred HHHHH-------h------hhhhHHHHHHHHHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc
Q 007367 338 FVELF-------V------GVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (606)
Q Consensus 338 ~~~~~-------~------G~~~~~vr~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld 400 (606)
+.... . ..+...++.+++.+.. ..+.||+|||+|.+.. ...+.|+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~Ll~~le 144 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLE 144 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------HHHHHHHHHHH
T ss_pred HHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH--------------HHHHHHHHHHh
Confidence 10000 0 0123346777776653 3468999999999832 34567777777
Q ss_pred cCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHH
Q 007367 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (606)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~ 479 (606)
. ...++++|++|+.+..+++.+++ |+ ..+.+++|+.++..++++.+++..++. .+..+..++..+.| +.+++.
T Consensus 145 ~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~ 218 (373)
T 1jr3_A 145 E--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDAL 218 (373)
T ss_dssp S--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHH
T ss_pred c--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHH
Confidence 4 34568888888988889999998 66 689999999999999999887654443 23336778888865 889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 480 NLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 480 ~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
++++.+...+ ...|+.+++.+++
T Consensus 219 ~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 219 SLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHhc----CCcccHHHHHHHh
Confidence 9998875442 3568888876553
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=3.2e-16 Score=181.29 Aligned_cols=197 Identities=21% Similarity=0.280 Sum_probs=137.0
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHh
Q 007367 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK-GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV 343 (606)
Q Consensus 268 f~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~-gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~ 343 (606)
.++|+|++++++.+.+.+...+..... ...|. ++||+||||||||++|+++|+.+ +.+|+.++|+++.+.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~----~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKD----PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSC----TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCC----CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 356999999999999888764422110 11233 69999999999999999999987 78999999999887554
Q ss_pred hhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC---------CCCcEEEEEee
Q 007367 344 GVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GNSGVIVLAAT 414 (606)
Q Consensus 344 G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~---------~~~~ViVIaaT 414 (606)
.. ...++...+...++||||||||.+. . .+++.|+..|+.-. ...++++|+||
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~~-----------~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKAH-----------P---DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGSC-----------H---HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred cc----cchhhHHHHhCCCeEEEEeCccccC-----------H---HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 33 1223344455667899999999883 2 35566666665421 12357999999
Q ss_pred CCCCC------------ccccccCCCccccccccCCCCHHHHHHHHHHHhcCC-------CCC---CcccHHHHHH--hC
Q 007367 415 NRPDV------------LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK-------ALA---KDVDFEKISR--RT 470 (606)
Q Consensus 415 N~p~~------------LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~-------~l~---~dvdl~~La~--~t 470 (606)
|.+.. +++.|++ ||+.+|.|++|+.+++.+|++.++... +.. .+..++.|+. ..
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 705 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVD 705 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCC
Confidence 97553 6788888 999999999999999999998766331 111 1222455654 34
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 007367 471 PGFTGADLQNLMNEAAIL 488 (606)
Q Consensus 471 ~G~SgaDL~~Lv~eA~~~ 488 (606)
..+..++|+++++++...
T Consensus 706 ~~~~~R~L~~~i~~~v~~ 723 (758)
T 3pxi_A 706 LEYGARPLRRAIQKHVED 723 (758)
T ss_dssp TTTTTTTHHHHHHHHTHH
T ss_pred CCCCChHHHHHHHHHHHH
Confidence 456788888888876543
No 65
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.7e-15 Score=155.06 Aligned_cols=203 Identities=17% Similarity=0.195 Sum_probs=145.8
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechh
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAAS 336 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~s 336 (606)
...+.+|++++|+++.++.|.+.+.. .+.|. +||+||+|+|||++|+++++++ +.++++++++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 34567899999999998888776542 12344 9999999999999999999986 3457777776
Q ss_pred hHHHHHhhhhhHHHHHHHHHHH-------cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEE
Q 007367 337 EFVELFVGVGASRVRDLFEKAK-------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVI 409 (606)
Q Consensus 337 e~~~~~~G~~~~~vr~lF~~A~-------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~Vi 409 (606)
+.. +...++++++... ...+.||||||+|.+.. ...+.|+..++.. ..+++
T Consensus 82 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~ 139 (323)
T 1sxj_B 82 DDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMELY--SNSTR 139 (323)
T ss_dssp SCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHHT--TTTEE
T ss_pred ccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhcc--CCCce
Confidence 521 1234555555544 23478999999999832 2345566666542 34577
Q ss_pred EEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007367 410 VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAIL 488 (606)
Q Consensus 410 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~ 488 (606)
+|.+||.+..+++.+.+ |+. .+.+++|+.+++.++++.+++..++. .+..+..++..+.| +.+.+.++++.+...
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG 215 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 88888999999999998 664 89999999999999999887544332 23346777777755 777777777766532
Q ss_pred HHHhCCCCCCHHHHHHHHH
Q 007367 489 AARRDLKEISKDEISDALE 507 (606)
Q Consensus 489 A~rr~~~~It~edl~~Al~ 507 (606)
. ..|+.+++.+++.
T Consensus 216 ---~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 ---H--GLVNADNVFKIVD 229 (323)
T ss_dssp ---H--SSBCHHHHHHHHT
T ss_pred ---C--CCcCHHHHHHHHC
Confidence 1 4688988877654
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=4.6e-16 Score=179.97 Aligned_cols=190 Identities=23% Similarity=0.318 Sum_probs=134.9
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeee
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSC 333 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~v 333 (606)
.+-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 345799999999998877665542 234579999999999999999999986 7888888
Q ss_pred chhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 334 AASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 334 s~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
++ ...|.|....+++.+|+.+....|+||||| +. ....+.|+..|+ ...+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-------------~~~~~~L~~~l~----~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-------------hhHHHHHHHHHh----cCCEEEEeC
Confidence 87 455788888899999999999899999999 10 113344444444 457899999
Q ss_pred eCCCC-----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-----CcccHHHHHHh-----CCCCCHHHH
Q 007367 414 TNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-----KDVDFEKISRR-----TPGFTGADL 478 (606)
Q Consensus 414 TN~p~-----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-----~dvdl~~La~~-----t~G~SgaDL 478 (606)
||..+ .+|++++| || ..|.|+.|+.+++.+||+.+....... .+..+..++.. ..++.+...
T Consensus 298 t~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (758)
T ss_dssp CCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHH
Confidence 99988 69999999 99 469999999999999999877553221 22223444433 345677888
Q ss_pred HHHHHHHHHHHHHhC
Q 007367 479 QNLMNEAAILAARRD 493 (606)
Q Consensus 479 ~~Lv~eA~~~A~rr~ 493 (606)
..++.+|+..+..+.
T Consensus 375 i~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 375 IDLIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc
Confidence 889998877665553
No 67
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.4e-16 Score=166.81 Aligned_cols=197 Identities=9% Similarity=0.054 Sum_probs=135.1
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeechhhHHH
Q 007367 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAASEFVE 340 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs~se~~~ 340 (606)
+.|.++..++|...+... +....|.+++|+||||||||++++++++++ .+.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 555555555554444321 123457899999999999999999999987 35688899865322
Q ss_pred ----------HHhh------hhhHHHHHHHHHH--HcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC
Q 007367 341 ----------LFVG------VGASRVRDLFEKA--KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF 402 (606)
Q Consensus 341 ----------~~~G------~~~~~vr~lF~~A--~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~ 402 (606)
.+.| .....++.+|+.. ....++||||||+|.+. .+..+..|+.+..
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~-- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS-- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc--
Confidence 2222 2345677788875 34668999999999995 1356777777544
Q ss_pred CCCCcEEEEEeeCCCCC----ccccccCCCccc-cccccCCCCHHHHHHHHHHHhcCCCC--------------------
Q 007367 403 SGNSGVIVLAATNRPDV----LDSALLRPGRFD-RQVTVDRPDVAGRVKILQVHSRGKAL-------------------- 457 (606)
Q Consensus 403 ~~~~~ViVIaaTN~p~~----LD~aLlRpgRFd-~~I~v~~Pd~~eR~~IL~~~l~~~~l-------------------- 457 (606)
....+++||+++|..+. |++++++ ||. .+|.|++++.++..+|++..++...-
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~ 236 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIRE 236 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 24567999999998864 4556666 886 68999999999999999988754210
Q ss_pred ----------------CCcccHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHh
Q 007367 458 ----------------AKDVDFEKISRR--TPGFTGADLQNLMNEAAILAARR 492 (606)
Q Consensus 458 ----------------~~dvdl~~La~~--t~G~SgaDL~~Lv~eA~~~A~rr 492 (606)
-.+..++.+|+. ......|..-++|+.|...|.++
T Consensus 237 ~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 237 GQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp ------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 022224555553 12346777778888888888654
No 68
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.65 E-value=1e-16 Score=150.18 Aligned_cols=152 Identities=24% Similarity=0.367 Sum_probs=109.0
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs 334 (606)
+.+|++++|.++..+.+.+. +.. ..+.++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~---l~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQI---LSR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHH---HTS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHH---HhC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 45799999999876555443 332 235689999999999999999999986 78889998
Q ss_pred hhhHHHH--HhhhhhHHHHHHHHHHHcC-CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 007367 335 ASEFVEL--FVGVGASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (606)
Q Consensus 335 ~se~~~~--~~G~~~~~vr~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVI 411 (606)
+..+... +.+.....++.++..+... .|++|||||+|.+...+... .... ...+.|+..++ ..++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~---~~~~~l~~~~~----~~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGAL---DAGNILKPMLA----RGELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSC---CTHHHHHHHHH----TTCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccch---HHHHHHHHHHh----cCCeeEE
Confidence 8877532 3445556677777777654 68899999999996543211 1111 22333333343 3567899
Q ss_pred EeeCCCC-----CccccccCCCccccccccCCCC
Q 007367 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPD 440 (606)
Q Consensus 412 aaTN~p~-----~LD~aLlRpgRFd~~I~v~~Pd 440 (606)
++||.++ .+++++++ ||+. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 9999765 58999999 9984 8898886
No 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.8e-15 Score=155.09 Aligned_cols=202 Identities=22% Similarity=0.267 Sum_probs=141.2
Q ss_pred cCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCeeeech
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-----VPFFSCAA 335 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g-----~pfi~vs~ 335 (606)
.+..+.+|++++|++++++.|...+..- +.| ++||+||||||||++|+++++++. .+++.+++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 3456778999999999998888766531 222 499999999999999999999863 34677777
Q ss_pred hhHHHHHhhhhhHHHHHHHHHH-H-----cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEE
Q 007367 336 SEFVELFVGVGASRVRDLFEKA-K-----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVI 409 (606)
Q Consensus 336 se~~~~~~G~~~~~vr~lF~~A-~-----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~Vi 409 (606)
++.... ..++..+... . ...+.||+|||+|.+.. ...+.|+..++.. ..++.
T Consensus 85 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~ 142 (327)
T 1iqp_A 85 SDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--SSNVR 142 (327)
T ss_dssp TCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEE
T ss_pred cccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCe
Confidence 654321 1122222221 1 14578999999999832 2345566666643 34578
Q ss_pred EEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007367 410 VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAIL 488 (606)
Q Consensus 410 VIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~ 488 (606)
+|++||.++.+++.+.+ |+. .+.+++|+.++..++++..++..++. .+..+..++..+.| +.+.+.++++.+...
T Consensus 143 ~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~ 218 (327)
T 1iqp_A 143 FILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL 218 (327)
T ss_dssp EEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred EEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHhc
Confidence 88889999999999998 775 78999999999999999888765543 23346777777754 788888888766432
Q ss_pred HHHhCCCCCCHHHHHHH
Q 007367 489 AARRDLKEISKDEISDA 505 (606)
Q Consensus 489 A~rr~~~~It~edl~~A 505 (606)
...|+.+++.+.
T Consensus 219 -----~~~i~~~~v~~~ 230 (327)
T 1iqp_A 219 -----DKKITDENVFMV 230 (327)
T ss_dssp -----CSEECHHHHHHH
T ss_pred -----CCCCCHHHHHHH
Confidence 234666665544
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.64 E-value=2.8e-16 Score=158.39 Aligned_cols=204 Identities=23% Similarity=0.249 Sum_probs=123.0
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeeeechhhHHHHH
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFVELF 342 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~se~~~~~ 342 (606)
.+|++++|.+.+++.+.+.+..+.. .+.++||+||||||||++|+++++... .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 5799999999998888877765432 245799999999999999999999874 789999998764321
Q ss_pred -----hhhhhH-------HHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC--------
Q 007367 343 -----VGVGAS-------RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-------- 402 (606)
Q Consensus 343 -----~G~~~~-------~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~-------- 402 (606)
.|.... .....|..+ ..++|||||||.+. ...+ ..|+..++..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----------~~~q---~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MMVQ---EKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----------HHHH---HHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----------HHHH---HHHHHHHHhCCeecCCCc
Confidence 111000 011233333 24699999999983 2233 3444444421
Q ss_pred -CCCCcEEEEEeeCCC-------CCccccccCCCccccccccCCCCHHHHH----HHHHHHh----cCCCC-----CCcc
Q 007367 403 -SGNSGVIVLAATNRP-------DVLDSALLRPGRFDRQVTVDRPDVAGRV----KILQVHS----RGKAL-----AKDV 461 (606)
Q Consensus 403 -~~~~~ViVIaaTN~p-------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~----~IL~~~l----~~~~l-----~~dv 461 (606)
....++.+|++||.+ ..+++.|.+ ||.. +.+..|+.++|. .+++.++ +..+. ..+.
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 112357899999975 236677777 7753 455566665543 3433332 22222 1222
Q ss_pred cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 007367 462 DFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (606)
Q Consensus 462 dl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl 502 (606)
.+..|.......+.++|.++++.+...+ ....|+.+|+
T Consensus 213 a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 3455656655568899999999987665 2345665554
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.64 E-value=5.8e-16 Score=181.50 Aligned_cols=203 Identities=23% Similarity=0.292 Sum_probs=134.2
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeec
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----------g~pfi~vs 334 (606)
+.+|++++|.++..+.+.+++. . ..++++||+||||||||++|+++|+++ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4689999999987665555442 2 234578999999999999999999987 88999999
Q ss_pred hhhHH--HHHhhhhhHHHHHHHHHHHcC-CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 007367 335 ASEFV--ELFVGVGASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (606)
Q Consensus 335 ~se~~--~~~~G~~~~~vr~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVI 411 (606)
++.+. ..+.|....+++.+|+.+... .|+||||||+|.+.+..... + .....+.|...++ ...+.+|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g---~~~~~~~L~~~l~----~~~i~~I 303 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---G---AVDAGNMLKPALA----RGELRLI 303 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---c---hHHHHHHHHHHHh----CCCeEEE
Confidence 98886 457777888899999999875 68999999999997543221 1 1223333444443 3467899
Q ss_pred EeeCCCC----CccccccCCCccccccccCCCCHHHHHHHHHHHhcCC----CCC-CcccHHHHHHh-----CCCCCHHH
Q 007367 412 AATNRPD----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK----ALA-KDVDFEKISRR-----TPGFTGAD 477 (606)
Q Consensus 412 aaTN~p~----~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~----~l~-~dvdl~~La~~-----t~G~SgaD 477 (606)
++||.++ .+|++|.| ||+. +.++.|+.+++.+||+.++... .+. .+..+..++.. +..|.+..
T Consensus 304 ~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~k 380 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDK 380 (854)
T ss_dssp EEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHH
T ss_pred EecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHH
Confidence 9999765 47899999 9985 9999999999999998665422 111 22234444443 34567888
Q ss_pred HHHHHHHHHHHHHHh
Q 007367 478 LQNLMNEAAILAARR 492 (606)
Q Consensus 478 L~~Lv~eA~~~A~rr 492 (606)
...++.+|+..+..+
T Consensus 381 ai~lldea~a~~~~~ 395 (854)
T 1qvr_A 381 AIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 889999888776554
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=6.9e-16 Score=178.22 Aligned_cols=199 Identities=18% Similarity=0.248 Sum_probs=137.6
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH-------
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL------- 341 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~------- 341 (606)
++|+|++++++.+.+.+........ -..++..++||+||||||||++|+++|+.++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4589999999888887765321100 001233479999999999999999999999999999999988653
Q ss_pred -----HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC---C------CCc
Q 007367 342 -----FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---G------NSG 407 (606)
Q Consensus 342 -----~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~---~------~~~ 407 (606)
|+|.... ..+....+...++||||||||.+. ..+++.|++.|+.-. . -.+
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC--------------HHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 3433221 223444455667899999999873 236667777766321 0 145
Q ss_pred EEEEEeeCCCC-------------------------CccccccCCCccccccccCCCCHHHHHHHHHHHhcCC-------
Q 007367 408 VIVLAATNRPD-------------------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK------- 455 (606)
Q Consensus 408 ViVIaaTN~p~-------------------------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~------- 455 (606)
++||+|||... .++++|++ ||+.+|.|++|+.+++..|++.++.+.
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~ 676 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQK 676 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 88999999754 56788888 999999999999999999999877521
Q ss_pred C--CC-CcccHHHHHHhC--CCCCHHHHHHHHHHHHHH
Q 007367 456 A--LA-KDVDFEKISRRT--PGFTGADLQNLMNEAAIL 488 (606)
Q Consensus 456 ~--l~-~dvdl~~La~~t--~G~SgaDL~~Lv~eA~~~ 488 (606)
. +. .+..+..|++.. ..+..++|.++++.+...
T Consensus 677 ~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 677 GVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp TEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred CcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 1 11 122245555443 234577888877776543
No 73
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.61 E-value=6e-16 Score=160.60 Aligned_cols=202 Identities=22% Similarity=0.271 Sum_probs=130.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHH---
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF--- 342 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~--- 342 (606)
++++|.+.+.+++.+.+..+.. .+.+|||+||||||||++|++++... +.||+.++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4689999999888887776532 34579999999999999999999965 6899999998764422
Q ss_pred --hhhh------h-HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC---------C
Q 007367 343 --VGVG------A-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------G 404 (606)
Q Consensus 343 --~G~~------~-~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~---------~ 404 (606)
.|.. + ......|+.+.. ++|||||||.+.. . ....|+..++... .
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~---g~L~LDEi~~l~~-----------~---~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADG---GTLFLDEIGDISP-----------L---MQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTT---SEEEEESCTTCCH-----------H---HHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcCC---CEEEEeccccCCH-----------H---HHHHHHHHHhcCEeeecCCcccc
Confidence 1210 0 112345666643 5999999999832 2 3344555554321 1
Q ss_pred CCcEEEEEeeCCCC-------CccccccCCCccccccccCCCCHHHHHH----HHHHHhcC----CC---C-CCcccHHH
Q 007367 405 NSGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHSRG----KA---L-AKDVDFEK 465 (606)
Q Consensus 405 ~~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l~~----~~---l-~~dvdl~~ 465 (606)
..++.||++||.+- .+++.|.. ||. .+.+..|+..+|.+ +++.+++. .+ . ..+..+..
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~ 211 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDL 211 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHH
Confidence 23588999999861 23444554 554 56666777666543 44444321 11 1 12233566
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 007367 466 ISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (606)
Q Consensus 466 La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~ 503 (606)
|....+..+.++|.++++.++..+ ....|+.+|+.
T Consensus 212 L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 212 LIHYDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp HHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 777765668999999999988765 33567777664
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.60 E-value=5.9e-16 Score=171.24 Aligned_cols=208 Identities=20% Similarity=0.159 Sum_probs=132.5
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCeeeechhh-HHHHHhhh
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE-FVELFVGV 345 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g--~pfi~vs~se-~~~~~~G~ 345 (606)
..|+|++++++.+...+.. ..++||+||||||||++|+++|+.++ .+|..+++.- -.+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3588999988766544321 24799999999999999999999884 3555554431 11222221
Q ss_pred --hhH-HHHHHHHHHHcC---CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC---------CCCCcEEE
Q 007367 346 --GAS-RVRDLFEKAKSK---APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF---------SGNSGVIV 410 (606)
Q Consensus 346 --~~~-~vr~lF~~A~~~---aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~---------~~~~~ViV 410 (606)
... .-...|..+..+ .++|||||||+.+. ..+.+.|+..|+.. ..+.. ++
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~i 152 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERQFRNGAHVEKIPMR-LL 152 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC--------------HHHHHHHHHHHHSSEEECSSSEEECCCC-EE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc--------------HHHHHHHHHHHHHHhccCCCCcCCcchh-hh
Confidence 111 012223322222 46799999998762 23556677766531 11122 46
Q ss_pred EEeeCCCCC---ccccccCCCccccccccCCCCH-HHHHHHHHHHhcC-------------------------CCCCCcc
Q 007367 411 LAATNRPDV---LDSALLRPGRFDRQVTVDRPDV-AGRVKILQVHSRG-------------------------KALAKDV 461 (606)
Q Consensus 411 IaaTN~p~~---LD~aLlRpgRFd~~I~v~~Pd~-~eR~~IL~~~l~~-------------------------~~l~~dv 461 (606)
|+|||.+.. +.+++++ ||...+.++.|+. +++.+|++.+... ..+..+
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~- 229 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH- 229 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-
Confidence 777785332 3458998 9999999999987 7788998865421 111111
Q ss_pred cHHHHHHh---------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007367 462 DFEKISRR---------TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (606)
Q Consensus 462 dl~~La~~---------t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri 509 (606)
-.+.++.. ..|.|.+.+..+++.|...|..+++..|+.+|+. ++..+
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 12333332 2478999999999999999999999999999988 44333
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=8.9e-15 Score=153.04 Aligned_cols=209 Identities=22% Similarity=0.228 Sum_probs=139.5
Q ss_pred ccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----Ceeeec
Q 007367 260 EVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-----PFFSCA 334 (606)
Q Consensus 260 ~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~-----pfi~vs 334 (606)
..+..+.+|++++|++++++.|...+.. .+.|. +||+||||||||++|+++|+.+.. .++.++
T Consensus 16 ~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 16 VEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 3345677899999999998888766652 12344 899999999999999999998633 355566
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHc------CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcE
Q 007367 335 ASEFVELFVGVGASRVRDLFEKAKS------KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGV 408 (606)
Q Consensus 335 ~se~~~~~~G~~~~~vr~lF~~A~~------~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~V 408 (606)
+++.. +...+++.+..... ..+.|++|||+|.+.. ...+.|+..++... ..+
T Consensus 84 ~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~--~~~ 141 (340)
T 1sxj_C 84 ASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERYT--KNT 141 (340)
T ss_dssp TTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTT--TTE
T ss_pred Ccccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcCC--CCe
Confidence 54421 12334443333221 2368999999999832 23456666666543 356
Q ss_pred EEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007367 409 IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (606)
Q Consensus 409 iVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~ 487 (606)
.+|.+||.+..+.+++++ |+. .+.+..++.++..+++...++..++. .+.....++..+.| +.+.+.++++.+..
T Consensus 142 ~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~ 217 (340)
T 1sxj_C 142 RFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKA 217 (340)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTT
T ss_pred EEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 677888999999999999 775 78899999999999998887544332 22335566666554 66666666655543
Q ss_pred HHHHhCCCCCCHHHHHHHH
Q 007367 488 LAARRDLKEISKDEISDAL 506 (606)
Q Consensus 488 ~A~rr~~~~It~edl~~Al 506 (606)
.+...+...|+.+++.+++
T Consensus 218 ~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 218 TLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTCSSSCCCBCHHHHHHHT
T ss_pred hcCCcccccccHHHHHHHh
Confidence 3221122368888876654
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=9.4e-16 Score=173.09 Aligned_cols=219 Identities=18% Similarity=0.151 Sum_probs=139.6
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee----chhhHHHH---
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC----AASEFVEL--- 341 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v----s~se~~~~--- 341 (606)
..|+|++.+|+.+.-.+..- ..........+...++||+||||||||++|+++|+.++..++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 45899999887663211110 00011111223334899999999999999999999987665542 22222211
Q ss_pred --HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC-----------CCCcE
Q 007367 342 --FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSGV 408 (606)
Q Consensus 342 --~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~-----------~~~~V 408 (606)
+.|... .....+..|.. +|+||||||.+.. ...+.|+..|+... .+.++
T Consensus 374 ~~~~g~~~-~~~G~l~~A~~---gil~IDEid~l~~--------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLADG---GIAVIDEIDKMRD--------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp GGGTSSCS-EEECHHHHHSS---SEECCTTTTCCCS--------------HHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred cccccccc-ccCCeeEecCC---CcEEeehhhhCCH--------------hHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 111100 00123334433 5999999999832 23455666665321 13467
Q ss_pred EEEEeeCCCC-------------CccccccCCCcccc-ccccCCCCHHHHHHHHHHHhcCCC-------C----------
Q 007367 409 IVLAATNRPD-------------VLDSALLRPGRFDR-QVTVDRPDVAGRVKILQVHSRGKA-------L---------- 457 (606)
Q Consensus 409 iVIaaTN~p~-------------~LD~aLlRpgRFd~-~I~v~~Pd~~eR~~IL~~~l~~~~-------l---------- 457 (606)
.||+|||... .|+++|++ |||. .+..+.|+.+ ...|.++.+.... +
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~ 512 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIA 512 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHH
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHH
Confidence 8999999886 89999999 9986 4556667777 7777776654321 0
Q ss_pred ---------CCcccHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007367 458 ---------AKDVDFEKISRR--------------TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (606)
Q Consensus 458 ---------~~dvdl~~La~~--------------t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri 509 (606)
-.+...+.|... ..+.|.+.+.++++.|...|..+++..|+.+|+.+|+.-+
T Consensus 513 ~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 513 YARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 011122333333 3578999999999999999999999999999999998754
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.1e-14 Score=147.67 Aligned_cols=195 Identities=13% Similarity=0.162 Sum_probs=132.4
Q ss_pred ccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------
Q 007367 260 EVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV----------- 328 (606)
Q Consensus 260 ~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~----------- 328 (606)
..+..+.+|+|++|++++++.|++.+. +. .+.|. ++|+||+|+|||++++++++++..
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~--~~--------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSD--QP--------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTT--CT--------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHh--hC--------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 344567889999999999877765441 11 23455 999999999999999999996421
Q ss_pred ------------------CeeeechhhHHHHHhhhhhHHHHHHHHHHH--------------cCCCeEEEEccccchhhc
Q 007367 329 ------------------PFFSCAASEFVELFVGVGASRVRDLFEKAK--------------SKAPCIVFIDEIDAVGRQ 376 (606)
Q Consensus 329 ------------------pfi~vs~se~~~~~~G~~~~~vr~lF~~A~--------------~~aP~ILfIDEID~L~~~ 376 (606)
+++.+++++... .....+++.++.+. ...|.||+|||+|.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~-- 147 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT-- 147 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--
T ss_pred eecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--
Confidence 122333222100 00012445444432 2357799999999972
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCC
Q 007367 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA 456 (606)
Q Consensus 377 r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~ 456 (606)
. ...+.|+..++... .++.+|.+||.++.+.+.+++ |+ ..+.|++|+.+++.++++..++..+
T Consensus 148 ---------~---~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 148 ---------K---DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp ---------H---HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred ---------H---HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcC
Confidence 1 23455666666443 357888889999999999998 77 7899999999999999998876544
Q ss_pred CC-C-cccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007367 457 LA-K-DVDFEKISRRTPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 457 l~-~-dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A 489 (606)
+. . +..+..++..+.| +.+++.++++.+....
T Consensus 211 ~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp CEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 32 2 3446778877765 8888888888776543
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.55 E-value=1.3e-14 Score=169.99 Aligned_cols=201 Identities=19% Similarity=0.267 Sum_probs=138.4
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH---
Q 007367 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--- 341 (606)
Q Consensus 268 f~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~--- 341 (606)
+++|+|++++++.+.+.+...+..... ..++..++||+||||||||++|+++++.+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999998888764321000 01223489999999999999999999988 789999999876542
Q ss_pred ---------HhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--C------
Q 007367 342 ---------FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--G------ 404 (606)
Q Consensus 342 ---------~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--~------ 404 (606)
|+|.. ....+....+...++||||||||.+. ..+++.|+..|+.-. .
T Consensus 634 s~l~g~~~~~~G~~--~~g~l~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 634 SRLIGAPPGYVGYE--EGGQLTEAVRRRPYSVILFDEIEKAH--------------PDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC--------------HHHHHHHHHHHTTTEECCSSSCCE
T ss_pred HHHcCCCCCCcCcc--ccchHHHHHHhCCCeEEEEecccccC--------------HHHHHHHHHHhccCceECCCCCEe
Confidence 11211 11234444455556899999999873 246777777777431 0
Q ss_pred -CCcEEEEEeeCCC--------------------------CCccccccCCCccccccccCCCCHHHHHHHHHHHhcC---
Q 007367 405 -NSGVIVLAATNRP--------------------------DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG--- 454 (606)
Q Consensus 405 -~~~ViVIaaTN~p--------------------------~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~--- 454 (606)
-.+++||+|||.. ..+.+.|+. ||+..+.+.+|+.+++..|++.++..
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1367899999972 235566776 99999999999999999999877642
Q ss_pred ------CCCC-CcccHHHHHHhCC--CCCHHHHHHHHHHHHHHH
Q 007367 455 ------KALA-KDVDFEKISRRTP--GFTGADLQNLMNEAAILA 489 (606)
Q Consensus 455 ------~~l~-~dvdl~~La~~t~--G~SgaDL~~Lv~eA~~~A 489 (606)
..+. .+..+..|+.... .++.++|+++++++...+
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred HHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 1111 2223566776655 578899999988876554
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=2.8e-13 Score=143.49 Aligned_cols=228 Identities=14% Similarity=0.122 Sum_probs=151.4
Q ss_pred ccccccccchHHHHHHHHHH-HHhcCchhhhhcCCCCCceEEE--EcCCCChHHHHHHHHHHhc---------CCCeeee
Q 007367 266 VTFADVAGADQAKLELQEVV-DFLKNPDKYTALGAKIPKGCLL--VGPPGTGKTLLARAVAGEA---------GVPFFSC 333 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv-~~Lk~p~~~~~lG~~~p~gVLL--~GPPGTGKT~LArAIA~e~---------g~pfi~v 333 (606)
...++++|.++..++|.+.+ ....... ...+..++| +||+|+|||+|++.+++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34578999999988888876 5432210 023567899 9999999999999998876 5677888
Q ss_pred chhh------HHHHHh---hh-------hhHH-HHHHHHHHH-cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHH
Q 007367 334 AASE------FVELFV---GV-------GASR-VRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (606)
Q Consensus 334 s~se------~~~~~~---G~-------~~~~-vr~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~L 395 (606)
+|.. +..... +. .... ...+.+... ...|.+|+|||+|.+...+. .....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHH
Confidence 8642 222111 11 1111 222222222 35688999999999853210 012455555
Q ss_pred HHHhccCCC-C--CcEEEEEeeCCCC---Ccc---ccccCCCccccccccCCCCHHHHHHHHHHHhcCC---CCCCcccH
Q 007367 396 LTEMDGFSG-N--SGVIVLAATNRPD---VLD---SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK---ALAKDVDF 463 (606)
Q Consensus 396 L~eld~~~~-~--~~ViVIaaTN~p~---~LD---~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~---~l~~dvdl 463 (606)
+..++.... . .++.+|++|+.++ .++ +.+.+ +|...+.+++++.++..++++.++... ....+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 555554331 2 6788888888665 344 55666 555559999999999999998765421 11233346
Q ss_pred HHHHHhCC------CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 464 EKISRRTP------GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 464 ~~La~~t~------G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
..++..+. | .++.+..++..+...+..++...++.+++..++....
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 77777777 5 7889999999998888888888899999998887653
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.51 E-value=1.5e-14 Score=133.29 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=80.8
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHH
Q 007367 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASR 349 (606)
Q Consensus 270 DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~ 349 (606)
+++|.+++++++.+.+..+.. .+.+|||+||||||||++|++++++.+ +|+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 689999999988888775422 245799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 350 VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 350 vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
...+|+.+. .++|||||||.+.. ..+..+.+++.... ..++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR-----------NIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH-----------HHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH-----------HHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 455666664 35999999999832 33334444444321 3457888888865
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.50 E-value=1.6e-14 Score=133.36 Aligned_cols=113 Identities=14% Similarity=0.167 Sum_probs=81.0
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhh
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV 345 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~ 345 (606)
.+++|.+...+++.+.+..+.. .+.+|||+||||||||++|+++++.. +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSE----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 3689999998888887765432 24579999999999999999999986 78999 999876543
Q ss_pred hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 346 GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 346 ~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
......|+.+.. ++|||||||.+.. . ....|+..|.. ...++.+|++||.+
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l~~-----------~---~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHLTR-----------E---QQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGSCH-----------H---HHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHCCH-----------H---HHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 334556776654 4999999999832 2 23345555532 23457789999975
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.42 E-value=8.8e-13 Score=148.94 Aligned_cols=221 Identities=21% Similarity=0.309 Sum_probs=133.4
Q ss_pred cCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe---eeech--
Q 007367 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF---FSCAA-- 335 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf---i~vs~-- 335 (606)
....+.+|++++|++.+++.+...+.. ...++|+||||||||++|+++++.+.... +.+.+
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 445567899999999998777655542 23689999999999999999999874321 11100
Q ss_pred ----------------hhHHHHHhh--------------------------------------hhhHHHHHHHHH-----
Q 007367 336 ----------------SEFVELFVG--------------------------------------VGASRVRDLFEK----- 356 (606)
Q Consensus 336 ----------------se~~~~~~G--------------------------------------~~~~~vr~lF~~----- 356 (606)
.++.+.... ........+|..
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 000000000 000001111210
Q ss_pred ------------------HHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc----c------------C
Q 007367 357 ------------------AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD----G------------F 402 (606)
Q Consensus 357 ------------------A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld----~------------~ 402 (606)
.....+.+|||||+|.+. ...+..+..+|+.-. + .
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 011234599999999982 233334444443211 0 0
Q ss_pred CCCCcEEEEEeeCCC--CCccccccCCCccc---cccccCC--C-CHHHHHHHHHHHhcC------CCCCCcccHHHHHH
Q 007367 403 SGNSGVIVLAATNRP--DVLDSALLRPGRFD---RQVTVDR--P-DVAGRVKILQVHSRG------KALAKDVDFEKISR 468 (606)
Q Consensus 403 ~~~~~ViVIaaTN~p--~~LD~aLlRpgRFd---~~I~v~~--P-d~~eR~~IL~~~l~~------~~l~~dvdl~~La~ 468 (606)
....++.||++||+. +.++++|++ ||+ ..+.++. + +.+....+++...+. .....+..+..|.+
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~ 325 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVR 325 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHH
Confidence 112357899999986 579999999 886 3444432 2 344555555543321 11112223455554
Q ss_pred h---CCCC------CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007367 469 R---TPGF------TGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (606)
Q Consensus 469 ~---t~G~------SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~r 508 (606)
. ..|- +.+++.++++.|...|..++...|+.+|+.+|+.+
T Consensus 326 ~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 326 EAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3 2552 79999999999999998889999999999999864
No 83
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.41 E-value=1.5e-13 Score=168.82 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=108.8
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcC----------chhhhh------cCCC----------CCce--EEEEcCCCC
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF-LKN----------PDKYTA------LGAK----------IPKG--CLLVGPPGT 313 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~-Lk~----------p~~~~~------lG~~----------~p~g--VLL~GPPGT 313 (606)
...++|+||.|.+++|+++.+.+.+ ++. ++.+.. .|.. +|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 3458999999999999999998886 522 556655 3333 5666 999999999
Q ss_pred hHHHHHHHHHHhc---CCCeeeechhh----HH--------HHHhhh----hhHHHHHHHHHHHcCCCeEEEEccccchh
Q 007367 314 GKTLLARAVAGEA---GVPFFSCAASE----FV--------ELFVGV----GASRVRDLFEKAKSKAPCIVFIDEIDAVG 374 (606)
Q Consensus 314 GKT~LArAIA~e~---g~pfi~vs~se----~~--------~~~~G~----~~~~vr~lF~~A~~~aP~ILfIDEID~L~ 374 (606)
|||+||++++.+. |-|.+.++..+ +. +.|+++ +++.++.+|..|+..+||+||+||+|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999998876 45555555544 33 445566 78899999999999999999999999999
Q ss_pred hccC---CCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 375 RQRG---AGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 375 ~~r~---~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
+.++ ........-..+.++++|.+|++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 8843 221112244566899999999987777778887 67764
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.36 E-value=4.9e-12 Score=132.42 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=115.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeee-----e---chhhH--------HHHH-----hhhhhHHHHHHHHHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS-----C---AASEF--------VELF-----VGVGASRVRDLFEKAK 358 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~-----v---s~se~--------~~~~-----~G~~~~~vr~lF~~A~ 358 (606)
+.|.++||+||||+|||++|+++|+.+.+.... - +|..+ .... ...+...++++++.+.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999999987643210 0 01111 0000 0123456778877765
Q ss_pred c----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCcccccc
Q 007367 359 S----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQV 434 (606)
Q Consensus 359 ~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I 434 (606)
. ..+.|++|||+|.+.. ...|.||..++. ...++++|.+||.++.+.+.+++ |+ ..+
T Consensus 102 ~~~~~~~~kvviIdead~l~~--------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~ 162 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLTD--------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC-RLH 162 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBCH--------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEE
T ss_pred hccccCCcEEEEECchhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc-eee
Confidence 3 3468999999999832 356788888884 44568888889999999999999 66 479
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHH
Q 007367 435 TVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAA 486 (606)
Q Consensus 435 ~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~ 486 (606)
.|++|+.++..++++... .+ .+..+..++..+.| +.+++.++++...
T Consensus 163 ~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSHH
T ss_pred eCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccch
Confidence 999999999999998775 22 33445677777765 7777777776554
No 85
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.33 E-value=3e-12 Score=137.13 Aligned_cols=209 Identities=22% Similarity=0.282 Sum_probs=135.3
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH---
Q 007367 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--- 341 (606)
Q Consensus 268 f~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~--- 341 (606)
+.+++|.....+++.+.+..+... ...+||+|++||||+++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 457888888888887777765433 2368999999999999999998765 479999999876442
Q ss_pred --Hhhhh------h-HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCC----CC
Q 007367 342 --FVGVG------A-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSG----NS 406 (606)
Q Consensus 342 --~~G~~------~-~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~----~~ 406 (606)
..|.. + .....+|+.|..+ +||||||+.+ +...+..+.++|+.-. .... ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGG---TLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTS---EEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCc---EEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 22210 0 1123467777655 9999999999 3344445555555421 1111 13
Q ss_pred cEEEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHHH----HHHHHh----cCCCCC----CcccHHHHH
Q 007367 407 GVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHS----RGKALA----KDVDFEKIS 467 (606)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l----~~~~l~----~dvdl~~La 467 (606)
++.||++||..- ..+...|+|.. .+.+..|+..+|.+ ++++++ ++.+.. .+..+..|.
T Consensus 272 ~~rii~at~~~l---~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRNI---KELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSCH---HHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCCH---HHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 578999999754 23444556543 45677788877743 333332 222211 222356666
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007367 468 RRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (606)
Q Consensus 468 ~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al 506 (606)
...+-.+.++|++++++|+..+ ....|+.+|+...+
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 6666678899999999998765 33578888886543
No 86
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.27 E-value=1.5e-11 Score=102.28 Aligned_cols=75 Identities=25% Similarity=0.539 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007367 437 DRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (606)
Q Consensus 437 ~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~ 511 (606)
|+||.++|.+||+.|+++..+..++|+..|+..|.||||+||.++|++|++.|.+++...|+.+||.+|++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999988889999999999999999999999999999999999999999999999999864
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=3.4e-11 Score=125.14 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=104.6
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------CCCeeeechhhHHHHHhhhh
Q 007367 273 GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA------GVPFFSCAASEFVELFVGVG 346 (606)
Q Consensus 273 G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~------g~pfi~vs~se~~~~~~G~~ 346 (606)
|++++.+.|+..+..- + +..+|||||||+|||++|+++|+.+ +..++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 5677766666655431 1 3468999999999999999999864 34566666542 0134
Q ss_pred hHHHHHHHHHHHcC----CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccc
Q 007367 347 ASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (606)
Q Consensus 347 ~~~vr~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~ 422 (606)
...+|++++.+... ...|+||||+|.+.. ...|.||..|+. +...+++|.+|+.++.+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~--------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ--------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH--------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 45678888888643 246999999999932 356888998884 3456778888888999999
Q ss_pred cccCCCccccccccCCCCHHHHHHHHHHHh
Q 007367 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (606)
Q Consensus 423 aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l 452 (606)
++++ | ++.|++|+.++..++++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 6 88999999999999998776
No 88
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.24 E-value=2e-11 Score=103.84 Aligned_cols=78 Identities=24% Similarity=0.516 Sum_probs=73.4
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007367 435 TVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAG 512 (606)
Q Consensus 435 ~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g 512 (606)
.-.+||.++|.+||+.++++.++..++|+..|++.|.||||+||.++|++|++.|.++....|+.+||.+|++++..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 456899999999999999999988899999999999999999999999999999999998999999999999998754
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.23 E-value=4.5e-11 Score=113.20 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=83.6
Q ss_pred CCccccccccch-HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhH
Q 007367 264 TGVTFADVAGAD-QAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEF 338 (606)
Q Consensus 264 ~~~tf~DI~G~d-~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~ 338 (606)
.+.+|+++++.+ ..++.+..+..++.+... ....+++|+||+|||||+|++++++.+ |..++++++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNP------EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCG------GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccc------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 356899998743 344444444445443222 235689999999999999999999876 678888888887
Q ss_pred HHHHhhhhhH-HHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 339 VELFVGVGAS-RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 339 ~~~~~G~~~~-~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
.+.+...... ....+++... .|.+|+|||++... .+......+..++..... .+..+|.+||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~--~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~ 143 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTVL--NSPVLVLDDLGSER---------LSDWQRELISYIITYRYN----NLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHHH--TCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHHH----TTCEEEEECCCC
T ss_pred HHHHHHHhcCchHHHHHHHhc--CCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHHH----cCCCEEEEcCCC
Confidence 7654322111 0112233332 56799999998642 234445566666665431 234677777765
Q ss_pred C
Q 007367 418 D 418 (606)
Q Consensus 418 ~ 418 (606)
.
T Consensus 144 ~ 144 (180)
T 3ec2_A 144 L 144 (180)
T ss_dssp S
T ss_pred h
Confidence 4
No 90
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.22 E-value=2.4e-11 Score=103.70 Aligned_cols=79 Identities=30% Similarity=0.560 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccccc
Q 007367 440 DVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNA 518 (606)
Q Consensus 440 d~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g~e~~~~ 518 (606)
|.++|.+||+.|+++.++..++|+..|++.|+||||+||.++|++|++.|.+++...|+.+||.+|++++..+.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999998876654
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.13 E-value=2.3e-10 Score=146.35 Aligned_cols=137 Identities=19% Similarity=0.316 Sum_probs=94.8
Q ss_pred CceEEEEcCCCChHHHHHH-HHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHH---------------cCCCeEE
Q 007367 302 PKGCLLVGPPGTGKTLLAR-AVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAK---------------SKAPCIV 365 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LAr-AIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~---------------~~aP~IL 365 (606)
.+++||+||||||||++|+ +++...+.+++.++++...+ ...+...++... .+.++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 4689999999999999995 55555577777777764432 123333333321 2345799
Q ss_pred EEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC-C-------CcEEEEEeeCCCC-----CccccccCCCcccc
Q 007367 366 FIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-N-------SGVIVLAATNRPD-----VLDSALLRPGRFDR 432 (606)
Q Consensus 366 fIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~-~-------~~ViVIaaTN~p~-----~LD~aLlRpgRFd~ 432 (606)
||||+|.-...+. +.....+.+.+++. ..++.. . .++.+|||+|++. .|+++++| || .
T Consensus 1341 FiDEinmp~~d~y-----g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-----GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCSS-----SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eeccccccccccc-----CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 9999987533221 23344556666653 223211 1 2589999999994 79999999 89 7
Q ss_pred ccccCCCCHHHHHHHHHHHhc
Q 007367 433 QVTVDRPDVAGRVKILQVHSR 453 (606)
Q Consensus 433 ~I~v~~Pd~~eR~~IL~~~l~ 453 (606)
++.++.|+.+++..|+..+++
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999997764
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.08 E-value=2.5e-10 Score=109.80 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=66.7
Q ss_pred CccccccccchHH-HHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 265 GVTFADVAGADQA-KLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 265 ~~tf~DI~G~d~~-K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
..+|+++++.+.. ++.+..+..++..... ...+++++|+||||||||++|+++++++ +.+++.+++.++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 5689999987643 3334444444432211 0124789999999999999999999877 67888899988776
Q ss_pred HHhhhh-hHHHHHHHHHHHcCCCeEEEEccccch
Q 007367 341 LFVGVG-ASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 341 ~~~G~~-~~~vr~lF~~A~~~aP~ILfIDEID~L 373 (606)
.+.... ...+..+++.... +.+|||||++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 543211 1112333444433 359999999775
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.08 E-value=1.2e-10 Score=123.83 Aligned_cols=194 Identities=20% Similarity=0.314 Sum_probs=122.4
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CeeeechhhHHH-----H
Q 007367 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASEFVE-----L 341 (606)
Q Consensus 269 ~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~se~~~-----~ 341 (606)
.+++|......++.+.+..+... ...+|++|++||||+++|+++....+. +|+.++|..+.+ .
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 46889998888888777765432 235899999999999999999887643 399999986432 1
Q ss_pred Hhhhh-------hHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhc--cCCCC----CcE
Q 007367 342 FVGVG-------ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GFSGN----SGV 408 (606)
Q Consensus 342 ~~G~~-------~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld--~~~~~----~~V 408 (606)
..|.. .......|+.|..+ +||||||+.+ +...+..+.++|+.-. ....+ .++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcCCC---eEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 22211 01122357777655 8999999999 3344445555554321 11111 247
Q ss_pred EEEEeeCCCCCccccccCCCcccc-------ccccCCCCHHHHH----HHHHHHh----cCCCC----CCcccHHHHHHh
Q 007367 409 IVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRV----KILQVHS----RGKAL----AKDVDFEKISRR 469 (606)
Q Consensus 409 iVIaaTN~p~~LD~aLlRpgRFd~-------~I~v~~Pd~~eR~----~IL~~~l----~~~~l----~~dvdl~~La~~ 469 (606)
.+|++||..- ..+...|+|.. .+.+..|...+|. .++++++ ++.+. -.+..+..|...
T Consensus 265 rii~at~~~l---~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 265 RVISATNKNL---EEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp EEEEEESSCH---HHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred EEEEecCCCH---HHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 8999999643 33444456644 5566678777763 3333333 21111 122235666666
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 007367 470 TPGFTGADLQNLMNEAAILA 489 (606)
Q Consensus 470 t~G~SgaDL~~Lv~eA~~~A 489 (606)
.+..+.++|+|++++++..+
T Consensus 342 ~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 66678999999999987654
No 94
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.99 E-value=6.7e-10 Score=93.22 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007367 440 DVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAG 512 (606)
Q Consensus 440 d~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g 512 (606)
|.++|.+||+.|+++.++..++|+..|+..|.||||+||.++|++|+..|.++....|+.+||..|++++.+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6789999999999999988899999999999999999999999999999999998999999999999998654
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.94 E-value=5.1e-09 Score=114.30 Aligned_cols=211 Identities=18% Similarity=0.148 Sum_probs=123.2
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHH-HHhcCCCeee-echh---hHHHHHhh-
Q 007367 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV-AGEAGVPFFS-CAAS---EFVELFVG- 344 (606)
Q Consensus 271 I~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAI-A~e~g~pfi~-vs~s---e~~~~~~G- 344 (606)
|.|++.+|..|.-.+ +....+ .+-.-+|||.|+||| ||++|+++ ++-+....+. ..++ .+...+.+
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 899999876664322 211111 122337999999999 99999999 6655332221 1111 11100000
Q ss_pred hhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccC-------CCCCcEEEEEeeCCC
Q 007367 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-------SGNSGVIVLAATNRP 417 (606)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~-------~~~~~ViVIaaTN~p 417 (606)
.+...-...+..|..+ |+|||||+.+-. .++..|++.|+.- .-+.++.||||+|..
T Consensus 287 tG~~~~~G~l~LAdgG---vl~lDEIn~~~~--------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 287 RGWALRAGAAVLADGG---ILAVDHLEGAPE--------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp SSEEEEECHHHHTTTS---EEEEECCTTCCH--------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred CCcccCCCeeEEcCCC---eeehHhhhhCCH--------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 0000001234445544 999999999832 3455566665532 113468999999986
Q ss_pred C-----------CccccccCCCcccccc-ccCCCCHHH-------------HHHHHHHHhc----CCCCCCcccHHHHH-
Q 007367 418 D-----------VLDSALLRPGRFDRQV-TVDRPDVAG-------------RVKILQVHSR----GKALAKDVDFEKIS- 467 (606)
Q Consensus 418 ~-----------~LD~aLlRpgRFd~~I-~v~~Pd~~e-------------R~~IL~~~l~----~~~l~~dvdl~~La- 467 (606)
. .|++++++ |||..+ .++.|+.+. .++++. +++ ...+..+. .+.+.
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea-~~yI~~ 425 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEA-RKRLEH 425 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHH-HHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHH-HHHHHH
Confidence 5 78899999 998744 455565433 122222 223 11122111 11111
Q ss_pred ----------H------hCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007367 468 ----------R------RTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (606)
Q Consensus 468 ----------~------~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~ 510 (606)
. ...|.|++.+..+++-|...|..++++.++.+|+.+|+.-+.
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 0 245789999999999999999999999999999999987543
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=3e-08 Score=102.00 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=113.4
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH------
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF------ 338 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~------ 338 (606)
.....+++|.++..+.|.+ +.. ..++|+||+|+|||+|++.++++.+.+++++++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~----l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG----LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH----TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCCHHHhcChHHHHHHHHH----hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 3456678999887665554 322 368999999999999999999988777777776532
Q ss_pred -----HHHHhhh-----------------------------------hhHHHHHHHHHHHcC--CCeEEEEccccchhhc
Q 007367 339 -----VELFVGV-----------------------------------GASRVRDLFEKAKSK--APCIVFIDEIDAVGRQ 376 (606)
Q Consensus 339 -----~~~~~G~-----------------------------------~~~~vr~lF~~A~~~--aP~ILfIDEID~L~~~ 376 (606)
...+... ....+..+++..... .|.+|+|||+|.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 1111000 012344555555442 3899999999998541
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcccc-----c--cCCCccccccccCCCCHHHHHHHHH
Q 007367 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSA-----L--LRPGRFDRQVTVDRPDVAGRVKILQ 449 (606)
Q Consensus 377 r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~a-----L--lRpgRFd~~I~v~~Pd~~eR~~IL~ 449 (606)
. .......+..+... . .++.+|.++.....+... . .-.||+...+.+++.+.++..+++.
T Consensus 153 ~-------~~~~~~~l~~~~~~---~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 153 R-------GVNLLPALAYAYDN---L---KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp T-------TCCCHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred C-------chhHHHHHHHHHHc---C---CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence 0 11112233333332 1 245666666543211111 0 0124666789999999999999998
Q ss_pred HHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHH
Q 007367 450 VHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNE 484 (606)
Q Consensus 450 ~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~e 484 (606)
..+...+...+ +...+...+.| .+.-+..++..
T Consensus 220 ~~~~~~~~~~~-~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 220 RGFQEADIDFK-DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHTCCCC-CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHcCCCCC-cHHHHHHHhCC-CHHHHHHHHHH
Confidence 77643233222 23777888877 45566665544
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.88 E-value=5.2e-10 Score=93.98 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 007367 442 AGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGP 513 (606)
Q Consensus 442 ~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~ri~~g~ 513 (606)
++|.+||+.|+++.++..++|+..|+..|.||||+||.++|++|++.|.+++...|+.+||..|++++..+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 478999999999988888999999999999999999999999999999999989999999999999986553
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.88 E-value=9.9e-08 Score=97.99 Aligned_cols=190 Identities=19% Similarity=0.204 Sum_probs=112.3
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH------
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV------ 339 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~------ 339 (606)
..-++++|.++..+.|.+.+.. | +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 4456789999987777766542 1 4789999999999999999999886 6666654331
Q ss_pred ------HHHhh--------------------hh----hHHHHHHHHHH----HcCCCeEEEEccccchhhccCCCCCCCC
Q 007367 340 ------ELFVG--------------------VG----ASRVRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGN 385 (606)
Q Consensus 340 ------~~~~G--------------------~~----~~~vr~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~ 385 (606)
..+.. .. ...+.++++.. ....|.+|+|||+|.+..... ...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~~~ 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----RGG 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----TTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----cch
Confidence 11110 00 01223333332 222389999999999853100 001
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCcc---------ccccCCCccccccccCCCCHHHHHHHHHHHhcCCC
Q 007367 386 DEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD---------SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA 456 (606)
Q Consensus 386 ~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD---------~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~ 456 (606)
. ..+..|...++.. .++.+|.++.....++ ..+. ||+...+.+.+.+.++-.++++..+...+
T Consensus 149 ~---~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 149 K---ELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp H---HHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred h---hHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 1 2222222223322 2455665554321111 1122 36666899999999999999988775444
Q ss_pred CC-CcccHHHHHHhCCCCCHHHHHHHHHH
Q 007367 457 LA-KDVDFEKISRRTPGFTGADLQNLMNE 484 (606)
Q Consensus 457 l~-~dvdl~~La~~t~G~SgaDL~~Lv~e 484 (606)
.. .+..+..+...+.| .+.-+..++..
T Consensus 221 ~~~~~~~~~~i~~~tgG-~P~~l~~~~~~ 248 (350)
T 2qen_A 221 LDVPENEIEEAVELLDG-IPGWLVVFGVE 248 (350)
T ss_dssp CCCCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 32 33356777788877 55566655543
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.84 E-value=2.2e-09 Score=111.39 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=63.7
Q ss_pred CccccccccchHH-HHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhHH
Q 007367 265 GVTFADVAGADQA-KLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFV 339 (606)
Q Consensus 265 ~~tf~DI~G~d~~-K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~~ 339 (606)
+.+|+++.+.+.. +..+..+..++.... ...+.+++|+||||||||+||+++++++ +.+++++++.++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4689999875532 333333444443221 1125789999999999999999999855 4788889998887
Q ss_pred HHHhhhh-hHHHHHHHHHHHcCCCeEEEEccccch
Q 007367 340 ELFVGVG-ASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 340 ~~~~G~~-~~~vr~lF~~A~~~aP~ILfIDEID~L 373 (606)
..+.... .......+..... +.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHT--SSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 6554321 1112222333332 359999999765
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.82 E-value=6e-09 Score=96.90 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=65.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 378 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~ 378 (606)
...++|+||+|+|||+|++++++.. |..++++++.++... +....|.+|+|||++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~--- 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN--- 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh---
Confidence 4579999999999999999999977 777888887765432 1123478999999988632
Q ss_pred CCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC-CCCCcc--ccccCCCccccc
Q 007367 379 AGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN-RPDVLD--SALLRPGRFDRQ 433 (606)
Q Consensus 379 ~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN-~p~~LD--~aLlRpgRFd~~ 433 (606)
..++.+..++..+.. ....++|.+|| .|..+. +.|.+ |+..-
T Consensus 98 --------~~~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g 142 (149)
T 2kjq_A 98 --------EEQALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYC 142 (149)
T ss_dssp --------HHHHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGS
T ss_pred --------HHHHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcC
Confidence 124455555555432 22222444555 455443 67776 66543
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.77 E-value=1.8e-09 Score=112.96 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=69.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeech--hhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA--SEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGA 379 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~--se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~ 379 (606)
.+.++|+||||||||+||.++|.+.|.+.++++. .+..+.+.......+..+++...... +|||||++.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 3457999999999999999999876555444443 22222122223344445555555544 9999999999554322
Q ss_pred CCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccc
Q 007367 380 GLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSAL 424 (606)
Q Consensus 380 ~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aL 424 (606)
... .....+.+.+++..|.++....++.+|+++| +...|+++
T Consensus 201 ~s~--~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 201 NTT--SGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccc--cchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 100 0011345666666666554445678888888 55555554
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.64 E-value=1.3e-08 Score=99.54 Aligned_cols=129 Identities=20% Similarity=0.298 Sum_probs=82.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh--------cC-CCeeeechhhHHHHHh----------hh-----hhHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGE--------AG-VPFFSCAASEFVELFV----------GV-----GASRVRDLFEK 356 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e--------~g-~pfi~vs~se~~~~~~----------G~-----~~~~vr~lF~~ 356 (606)
.+...|++|+||||||++|..++.. .| .+++..++.++...+. .. ....+.+++..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 4557899999999999999886433 35 7776677665532111 10 11222222211
Q ss_pred HHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCcccccccc
Q 007367 357 AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTV 436 (606)
Q Consensus 357 A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v 436 (606)
..+..+||+|||++.+.+.+.... +. ..++..++.. ...++-||.+|+.++.|+.++++ |++.++++
T Consensus 84 -~~~~~~vliIDEAq~l~~~~~~~~----e~-----~rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 84 -PENIGSIVIVDEAQDVWPARSAGS----KI-----PENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp -GGGTTCEEEETTGGGTSBCCCTTC----CC-----CHHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred -cccCceEEEEEChhhhccCccccc----hh-----HHHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 234467999999999976543211 11 1355555532 34456778888889999999988 99999999
Q ss_pred CCCCHH
Q 007367 437 DRPDVA 442 (606)
Q Consensus 437 ~~Pd~~ 442 (606)
..|...
T Consensus 151 ~~~~~~ 156 (199)
T 2r2a_A 151 ASNKMG 156 (199)
T ss_dssp EECSSC
T ss_pred cCcccC
Confidence 876544
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.59 E-value=5.2e-07 Score=115.90 Aligned_cols=165 Identities=17% Similarity=0.240 Sum_probs=109.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLG 382 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~ 382 (606)
.|+++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+... .+.+++|||+.+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~--------- 709 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL--------- 709 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc---------
Confidence 57999999999999999999999999999999986443 23345566655543 269999999998
Q ss_pred CCChhHHHHHHHHHHHhc----c-----------CCCCCcEEEEEeeCC----CCCccccccCCCccccccccCCCCHHH
Q 007367 383 GGNDEREQTINQLLTEMD----G-----------FSGNSGVIVLAATNR----PDVLDSALLRPGRFDRQVTVDRPDVAG 443 (606)
Q Consensus 383 ~~~~e~~~~Ln~LL~eld----~-----------~~~~~~ViVIaaTN~----p~~LD~aLlRpgRFd~~I~v~~Pd~~e 443 (606)
..+....+++.+..+. . +.-+..+.|++|.|. ...|+++|++ || +.+.+..||.+.
T Consensus 710 --~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 710 --DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred --ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 3344455544443321 1 112345678888883 4569999998 88 689999999998
Q ss_pred HHHHHHHHhcCCCCCCcc-----cH-HHHHHhCC-----CCCHHHHHHHHHHHHHHH
Q 007367 444 RVKILQVHSRGKALAKDV-----DF-EKISRRTP-----GFTGADLQNLMNEAAILA 489 (606)
Q Consensus 444 R~~IL~~~l~~~~l~~dv-----dl-~~La~~t~-----G~SgaDL~~Lv~eA~~~A 489 (606)
..+|+-... +....... .+ ..+.+... .|.-+.++.++..|....
T Consensus 785 i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 785 IAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 888764322 11100000 11 11112222 367899988888775443
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.54 E-value=6.9e-08 Score=103.19 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=79.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH-HHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhh
Q 007367 297 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV-ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGR 375 (606)
Q Consensus 297 lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~-~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~ 375 (606)
++...+..++|+||||+|||++++++++..+..++.+...+-. ..+++ .+ ...+++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg-------~~------~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELG-------VA------IDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHG-------GG------TTCSCEEETTCCCSTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHH-------Hh------cchhHHHHHHHHHHHH
Confidence 3677778899999999999999999999888776654432210 11111 11 2335789999999865
Q ss_pred -ccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCC
Q 007367 376 -QRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 438 (606)
Q Consensus 376 -~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~ 438 (606)
.++.. .+. .. .....+...+++ .+.|+.+||+++.+ +++++|||++..+....
T Consensus 231 ~~r~l~--~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLP--SGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCC--CCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhcc--ccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22211 111 11 123445555664 34578889999999 79999999998887744
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.52 E-value=2.2e-07 Score=116.00 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=80.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH----HHHHhh------------hhhHHHHHHHHHHH
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF----VELFVG------------VGASRVRDLFEKAK 358 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~----~~~~~G------------~~~~~vr~lF~~A~ 358 (606)
|...+++++|+||||||||+||.+++.++ |....+++..+. .....| ..+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 35677899999999999999999998775 445555554432 122222 23355667777888
Q ss_pred cCCCeEEEEccccchhhcc---CCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 359 SKAPCIVFIDEIDAVGRQR---GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 359 ~~aP~ILfIDEID~L~~~r---~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
..+|++|||||++.+.+.+ +...........+.++++|.+|.++....+++||.+-.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 8999999999999887643 22111111124567888888888876666766666543
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.34 E-value=3.2e-06 Score=88.02 Aligned_cols=174 Identities=16% Similarity=0.122 Sum_probs=113.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CC-C--eeeechhhHHHHHhhhhhHHHHHHHHHHHc----CCCeEEEEccc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GV-P--FFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEI 370 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~-p--fi~vs~se~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEI 370 (606)
.+..+|||||+|.||+..++.++..+ +. + .+.++. ...++++++.+.. ....|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 45678999999999999999998865 22 2 222221 1234555555432 34569999999
Q ss_pred cc-hhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC------CCccccccCCCccccccccCCCCHHH
Q 007367 371 DA-VGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP------DVLDSALLRPGRFDRQVTVDRPDVAG 443 (606)
Q Consensus 371 D~-L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p------~~LD~aLlRpgRFd~~I~v~~Pd~~e 443 (606)
|. +.. ...+.|+..++... .++++|.+++.+ ..+.+++.+ |. .++.+..++.++
T Consensus 86 ~~kl~~--------------~~~~aLl~~le~p~--~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~ 146 (343)
T 1jr3_D 86 ENGPNA--------------AINEQLLTLTGLLH--DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQ 146 (343)
T ss_dssp SSCCCT--------------THHHHHHHHHTTCB--TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTH
T ss_pred CCCCCh--------------HHHHHHHHHHhcCC--CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHH
Confidence 98 631 24566777777533 344444444432 346678887 44 478888999999
Q ss_pred HHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007367 444 RVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (606)
Q Consensus 444 R~~IL~~~l~~~~l~~dv-dl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~r 508 (606)
..+.++..++..++.-+. .+..|+..+. .+.+++.+.++....++ +...|+.+++.+.+..
T Consensus 147 l~~~l~~~~~~~g~~i~~~a~~~l~~~~~-gdl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELDDAANQVLCYCYE-GNLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHHTTCEECHHHHHHHHHSST-TCHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhc-hHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 999998888766654333 3455665555 47777777777765543 3457999988776654
No 107
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.27 E-value=1.6e-06 Score=94.41 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=99.2
Q ss_pred CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe---------eC---CCCCccccccCCCc
Q 007367 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA---------TN---RPDVLDSALLRPGR 429 (606)
Q Consensus 362 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa---------TN---~p~~LD~aLlRpgR 429 (606)
|.|+||||+|.+. ....+.|+..|+.... .++|+++ |+ .++.|++.+++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--h
Confidence 3599999999993 3578888998885443 3555455 32 16678999999 8
Q ss_pred cccccccCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007367 430 FDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (606)
Q Consensus 430 Fd~~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~rr~~~~It~edl~~Al~r 508 (606)
|.. +.+++|+.++..++|+..+...+.. .+..+..++......+++...++++.|...|..++...|+.+|+.+++.-
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 876 6999999999999999877533332 23335666666623489999999999999999999999999999999876
Q ss_pred HH
Q 007367 509 II 510 (606)
Q Consensus 509 i~ 510 (606)
+.
T Consensus 437 ~~ 438 (456)
T 2c9o_A 437 FY 438 (456)
T ss_dssp SC
T ss_pred hc
Confidence 43
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.13 E-value=1e-06 Score=86.63 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
.+++||+||||||||++|.++|+.+...++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 3589999999999999999999998655543
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.13 E-value=9.5e-06 Score=105.23 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=86.6
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHH----H------------cCCCeEE
Q 007367 303 KGCLLVGPPGTGKTLLARAV-AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKA----K------------SKAPCIV 365 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAI-A~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A----~------------~~aP~IL 365 (606)
+++||+||||||||.+++.. ++..+.+++.++++.-.+ ...+...++.. + .++..|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 46899999999999777654 444466677777764322 12222333221 0 1234699
Q ss_pred EEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCC-------CCcEEEEEeeCCCC-----CccccccCCCccccc
Q 007367 366 FIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-------NSGVIVLAATNRPD-----VLDSALLRPGRFDRQ 433 (606)
Q Consensus 366 fIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~-------~~~ViVIaaTN~p~-----~LD~aLlRpgRFd~~ 433 (606)
||||++.-.... .+.......+.+++..-.-+.. -.++.+|||.|.+. .|+++++| ||. +
T Consensus 1379 FiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-v 1450 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-I 1450 (3245)
T ss_dssp EETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-E
T ss_pred EecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-E
Confidence 999998632211 1223344556666654211111 13578999999873 59999999 884 6
Q ss_pred cccCCCCHHHHHHHHHHHh
Q 007367 434 VTVDRPDVAGRVKILQVHS 452 (606)
Q Consensus 434 I~v~~Pd~~eR~~IL~~~l 452 (606)
+.++.|+.+....|+..++
T Consensus 1451 i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999976544
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.99 E-value=1e-05 Score=77.27 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=23.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCe
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPF 330 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pf 330 (606)
.+.|.||+|+|||||++.+++..++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876443
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.92 E-value=1.5e-05 Score=76.47 Aligned_cols=38 Identities=21% Similarity=0.079 Sum_probs=30.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechh
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s 336 (606)
.....-++|+||||+|||++++.++...+.++++++..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 34445689999999999999999998666677777654
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.88 E-value=3.4e-05 Score=100.16 Aligned_cols=126 Identities=20% Similarity=0.266 Sum_probs=89.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhhhhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLG 382 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~ 382 (606)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|.-+.+. .+..++|||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 467899999999999999999999999999999864432 2233444444332 258899999998
Q ss_pred CCChhHHHHHHHHHHHh-------------c-c--CCCCCcEEEEEeeCC----CCCccccccCCCccccccccCCCCHH
Q 007367 383 GGNDEREQTINQLLTEM-------------D-G--FSGNSGVIVLAATNR----PDVLDSALLRPGRFDRQVTVDRPDVA 442 (606)
Q Consensus 383 ~~~~e~~~~Ln~LL~el-------------d-~--~~~~~~ViVIaaTN~----p~~LD~aLlRpgRFd~~I~v~~Pd~~ 442 (606)
..+...++.+.+..+ + | +.-+..+.|++|.|. ...|+++|+. || +.|.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 333334444333311 1 1 122345778888883 4579999999 88 66999999998
Q ss_pred HHHHHHH
Q 007367 443 GRVKILQ 449 (606)
Q Consensus 443 eR~~IL~ 449 (606)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.86 E-value=1.4e-05 Score=81.35 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
.++++|+||||||||++|++||+..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 35899999999999999999999754
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.86 E-value=7.4e-05 Score=71.88 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=26.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeec
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs 334 (606)
.....++|+||+|+|||+|++.++... +.++++++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 334568999999999999999998653 44555544
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.80 E-value=3.8e-05 Score=74.87 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=47.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhh------HHHHH--hhh---------------hh
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE------FVELF--VGV---------------GA 347 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se------~~~~~--~G~---------------~~ 347 (606)
....-++|+||||+|||+|++.++... +...++++..+ +.... .+. ..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 344568999999999999999999852 34566665543 11110 110 00
Q ss_pred ----HHHHHHHHHHHcCCCeEEEEccccchhh
Q 007367 348 ----SRVRDLFEKAKSKAPCIVFIDEIDAVGR 375 (606)
Q Consensus 348 ----~~vr~lF~~A~~~aP~ILfIDEID~L~~ 375 (606)
..+..+.+......|.+|+|||+..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1122234444556799999999998864
No 116
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.80 E-value=0.00022 Score=79.19 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=94.9
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeeeechhh-
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCAASE- 337 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~-------g~pfi~vs~se- 337 (606)
.....++|.+...++|.+.+.... ..++-++|+|++|+|||+||+.+++.. ...++.++.+.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 345679999998777766543211 124568999999999999999997532 11233333221
Q ss_pred ----HHHHHh------hh----------hhHHHHHHHHH-HH-cCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHH
Q 007367 338 ----FVELFV------GV----------GASRVRDLFEK-AK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (606)
Q Consensus 338 ----~~~~~~------G~----------~~~~vr~lF~~-A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~L 395 (606)
+...+. +. ....+...+.. .. ...|.+|+||+++... .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--------------------~ 250 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------------------V 250 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--------------------H
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--------------------H
Confidence 111111 10 01112222222 22 2368999999997531 1
Q ss_pred HHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCH
Q 007367 396 LTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTG 475 (606)
Q Consensus 396 L~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~Sg 475 (606)
+.. + ..+..||.||........ . . +....+..+...+.++-.+++..++.............|++.+.|. +
T Consensus 251 l~~---l--~~~~~ilvTsR~~~~~~~-~-~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-P 321 (591)
T 1z6t_A 251 LKA---F--DSQCQILLTTRDKSVTDS-V-M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-P 321 (591)
T ss_dssp HHT---T--CSSCEEEEEESCGGGGTT-C-C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-H
T ss_pred HHH---h--cCCCeEEEECCCcHHHHh-c-C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-c
Confidence 222 2 234567777765442211 1 1 1111111224678889999998877542211233467888888874 4
Q ss_pred HHHHHH
Q 007367 476 ADLQNL 481 (606)
Q Consensus 476 aDL~~L 481 (606)
--|..+
T Consensus 322 Lal~~~ 327 (591)
T 1z6t_A 322 LVVSLI 327 (591)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 117
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.76 E-value=8.7e-05 Score=72.51 Aligned_cols=112 Identities=23% Similarity=0.246 Sum_probs=62.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHH--Hh--cCCCeeeechhhHH----HHH--hh-------------------------
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVA--GE--AGVPFFSCAASEFV----ELF--VG------------------------- 344 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA--~e--~g~pfi~vs~se~~----~~~--~G------------------------- 344 (606)
....-+.|.||+|+|||+|++.++ .. .+...+.++..... ... .+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccc
Confidence 344568999999999999999998 32 23333333322110 000 00
Q ss_pred -----------hhhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 345 -----------VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 345 -----------~~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
........+........|.+|+|||+-.+..... ......+.+..++..+.. .++.||.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~~----~g~tii~v 178 (251)
T 2ehv_A 108 SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILLE----MGVTTILT 178 (251)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHHH----HCCEEEEE
T ss_pred cccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHHH----CCCeEEEE
Confidence 0011122333444557899999999988764221 123444556677776642 24567777
Q ss_pred eCCCCCc
Q 007367 414 TNRPDVL 420 (606)
Q Consensus 414 TN~p~~L 420 (606)
|+..+..
T Consensus 179 tH~~~~~ 185 (251)
T 2ehv_A 179 TEAPDPQ 185 (251)
T ss_dssp ECCC---
T ss_pred ECCCCCC
Confidence 7776544
No 118
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.75 E-value=0.00047 Score=82.29 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=100.2
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---C--C--Ceeeechhh-
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---G--V--PFFSCAASE- 337 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g--~--pfi~vs~se- 337 (606)
....+++|.++..++|.+.+.... ..++-+.|+|+.|+|||+||+.+++.. . . .++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 445679999998777766553211 124568899999999999999987752 1 1 122333221
Q ss_pred ----HHHHH------hh----------hhhHHHHHHHHHHHcC--CCeEEEEccccchhhccCCCCCCCChhHHHHHHHH
Q 007367 338 ----FVELF------VG----------VGASRVRDLFEKAKSK--APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (606)
Q Consensus 338 ----~~~~~------~G----------~~~~~vr~lF~~A~~~--aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~L 395 (606)
..... .+ .....+.+.+...... ++.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 11100 00 0112233333333333 37899999997541
Q ss_pred HHHhccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCC-CCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCC
Q 007367 396 LTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR-PDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFT 474 (606)
Q Consensus 396 L~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~-Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~S 474 (606)
.++.+. .+..||.||......... . .....+.++. .+.++-.++|..+.....-.......+|++.+.|.
T Consensus 250 --~~~~~~--~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl- 320 (1249)
T 3sfz_A 250 --VLKAFD--NQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS- 320 (1249)
T ss_dssp --HHTTTC--SSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-
T ss_pred --HHHhhc--CCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-
Confidence 122222 344678888766533211 1 2335677775 78888889998877443322233467888998875
Q ss_pred HHHHHH
Q 007367 475 GADLQN 480 (606)
Q Consensus 475 gaDL~~ 480 (606)
+-.|+.
T Consensus 321 PLal~~ 326 (1249)
T 3sfz_A 321 PLVVSL 326 (1249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.75 E-value=5.8e-05 Score=80.20 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=64.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHH----Hhhh-----------hhHHHHHHHHH-HHc
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL----FVGV-----------GASRVRDLFEK-AKS 359 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~----~~G~-----------~~~~vr~lF~~-A~~ 359 (606)
......++|+|+||+|||+||..++.++ +.++++++...-.+. ..|. ....+...++. .+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 3445568999999999999999987754 567777765432111 1111 11122223332 234
Q ss_pred CCCeEEEEccccchhhccCC-CCCCC-C-hhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 360 KAPCIVFIDEIDAVGRQRGA-GLGGG-N-DEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 360 ~aP~ILfIDEID~L~~~r~~-~~~~~-~-~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
..+++|+||.+..+...... +..+. + ....+.+.+++..|..+....++.||++..
T Consensus 151 ~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 67889999999999642211 00000 0 022244566666665544445556665533
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.74 E-value=4.5e-05 Score=79.25 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=65.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhhH--HH----HH--hhh----------------
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASEF--VE----LF--VGV---------------- 345 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se~--~~----~~--~G~---------------- 345 (606)
.....-++|+||||+|||+++..++..+ +.++++++...- .+ .. .|.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3444568999999999999999998865 456677665431 11 10 010
Q ss_pred hh---HHHHHHHHHHHc-CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 007367 346 GA---SRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (606)
Q Consensus 346 ~~---~~vr~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaT 414 (606)
.. ..+..+....+. ..+.+|+||++..+......+. +...++++.+.+++..+..+....++.||.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 00 112233344444 6789999999999975321110 11123344566666666554333345555543
No 121
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.73 E-value=2.4e-05 Score=82.61 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=47.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH----HHhhhh-----------hHHHHHHH-HHHHcC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----LFVGVG-----------ASRVRDLF-EKAKSK 360 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~----~~~G~~-----------~~~vr~lF-~~A~~~ 360 (606)
....-++|+||||+|||+|+..++..+ +.++++++...-.. ...|.. ...+..+. ..++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 344568999999999999999998654 55666665532111 111210 11112222 233356
Q ss_pred CCeEEEEccccchhh
Q 007367 361 APCIVFIDEIDAVGR 375 (606)
Q Consensus 361 aP~ILfIDEID~L~~ 375 (606)
.|++|+||++..+..
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 799999999999873
No 122
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.73 E-value=5.2e-05 Score=80.31 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH----HHhhhh--------hHHHHHHHH----HHHcCC
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----LFVGVG--------ASRVRDLFE----KAKSKA 361 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~----~~~G~~--------~~~vr~lF~----~A~~~a 361 (606)
...-++|+||||+|||+|+..++..+ +.++++++..+... ...|.. ...+.+++. ..+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 34468999999999999999998764 56677776543211 111110 011222222 233477
Q ss_pred CeEEEEccccchhhc-cCCCCCCCC--hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 362 PCIVFIDEIDAVGRQ-RGAGLGGGN--DEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 362 P~ILfIDEID~L~~~-r~~~~~~~~--~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
+++++||.+..+.+. .-.+..+.. ....+.+.+++..+..+....++.||.+
T Consensus 140 ~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 140 VDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp CSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred CCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 899999999988752 111111111 1234556666666665544445555554
No 123
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.70 E-value=9.4e-05 Score=80.44 Aligned_cols=131 Identities=18% Similarity=0.261 Sum_probs=69.3
Q ss_pred cccccCCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CC-Ceee
Q 007367 257 KFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GV-PFFS 332 (606)
Q Consensus 257 ~~~~~~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~-pfi~ 332 (606)
+.+..+..+.+|+++ .+++++.+..+..++...+ ..++|.|+||||||+++.+++..+ +. .++.
T Consensus 12 ~~~~~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 12 SGLVPRGSHMTFDDL--TEGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp ---------CCSSCC--CHHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCccccCCCccccC--CHHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 445567778899887 3455555666666655432 268999999999999999998765 33 3443
Q ss_pred echhhH----HHHHhhhhhHHHHHHHHHH----------------HcCCCeEEEEccccchhhccCCCCCCCChhHHHHH
Q 007367 333 CAASEF----VELFVGVGASRVRDLFEKA----------------KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTI 392 (606)
Q Consensus 333 vs~se~----~~~~~G~~~~~vr~lF~~A----------------~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~L 392 (606)
+..+.- +....+.....+..++... ......+|+|||+..+.. ..+
T Consensus 80 ~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~--------------~~~ 145 (459)
T 3upu_A 80 AAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDR--------------KLF 145 (459)
T ss_dssp EESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCH--------------HHH
T ss_pred ecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCH--------------HHH
Confidence 332211 1111222233333333210 011346999999987721 244
Q ss_pred HHHHHHhccCCCCCcEEEEEeeCC
Q 007367 393 NQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 393 n~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
..|+..+. ....+++++-.+.
T Consensus 146 ~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 146 KILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp HHHHHHSC---TTCEEEEEECTTS
T ss_pred HHHHHhcc---CCCEEEEECCHHH
Confidence 45555443 3455667765443
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.61 E-value=4.6e-05 Score=70.97 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=34.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
++.|+|+|+||+||||++++++..++.+++.++...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 456899999999999999999999999998887766654
No 125
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.60 E-value=8.8e-05 Score=93.08 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=77.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHHHH----hhh--------hhHHHHHHHHHHHc---
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF----VGV--------GASRVRDLFEKAKS--- 359 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~~~----~G~--------~~~~vr~lF~~A~~--- 359 (606)
|+.+...++|+|+||+|||+||..+|..+ +.++++++..+-...+ .|. ....+.+++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 35566789999999999999999998866 4578888886543332 221 11224555555544
Q ss_pred -CCCeEEEEccccchhh-ccCCC-CCCCC-hhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 360 -KAPCIVFIDEIDAVGR-QRGAG-LGGGN-DEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 360 -~aP~ILfIDEID~L~~-~r~~~-~~~~~-~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
..|++||||.++.+.. .+..+ .+... .-..+.+++++..|..+....++.||++..-
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999975 22111 11111 1223457888888887766667777776553
No 126
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.60 E-value=9.7e-05 Score=71.26 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
+....-+.|.||+|+|||+|++.+++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344468999999999999999999843
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.57 E-value=0.00011 Score=77.63 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=49.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh----HHHHHhhh-----------hhHHHHHHHHH-HHc
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE----FVELFVGV-----------GASRVRDLFEK-AKS 359 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se----~~~~~~G~-----------~~~~vr~lF~~-A~~ 359 (606)
......++|+|+||+|||+||..++.++ +.++++++... ......|. ....+.++++. .+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3445578999999999999999998754 56777777632 11111111 11223333332 234
Q ss_pred CCCeEEEEccccchhh
Q 007367 360 KAPCIVFIDEIDAVGR 375 (606)
Q Consensus 360 ~aP~ILfIDEID~L~~ 375 (606)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6788999999999864
No 128
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.56 E-value=0.00012 Score=76.70 Aligned_cols=115 Identities=22% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhhH------HHHH--hhh----------------h
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASEF------VELF--VGV----------------G 346 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se~------~~~~--~G~----------------~ 346 (606)
....-++|+||||+|||+++..++..+ +.++++++...- .... .|. .
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 334458999999999999999998863 456666665431 1110 010 0
Q ss_pred h---HHHHHHHHHHHc--CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeC
Q 007367 347 A---SRVRDLFEKAKS--KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (606)
Q Consensus 347 ~---~~vr~lF~~A~~--~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN 415 (606)
. ..+..+....+. ..+.+|+||.+..+....-.+. +....+++.+.+++..+..+....++.||.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 1 111222344444 6789999999999875321100 111223344566666655544344455665544
No 129
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.47 E-value=0.00041 Score=67.49 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=27.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeech
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~ 335 (606)
.....-++|+||||+|||+++..++... +.++++++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3444568999999999999998886543 556666554
No 130
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.47 E-value=0.00063 Score=74.02 Aligned_cols=153 Identities=23% Similarity=0.292 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCC--------CCCcEEEEEee----CC
Q 007367 349 RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVLAAT----NR 416 (606)
Q Consensus 349 ~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~--------~~~~ViVIaaT----N~ 416 (606)
..+..++.+..+ .|||+||||.++...+. .+++...+.+...||..||+.. ..++|++|++. +.
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 344556666333 39999999999765331 2333344557788999998742 34678899887 23
Q ss_pred CCCccccccCCCccccccccCCCCHHHHHHHHHH--------H---h--cCCCCC-CcccHHHHHH-------hCCCCCH
Q 007367 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQV--------H---S--RGKALA-KDVDFEKISR-------RTPGFTG 475 (606)
Q Consensus 417 p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~--------~---l--~~~~l~-~dvdl~~La~-------~t~G~Sg 475 (606)
+..+-|.|+. ||..+|.++.++.++..+|+.. + + .+..+. .+..+..|++ .|...-.
T Consensus 316 ~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~Ga 393 (444)
T 1g41_A 316 PSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGA 393 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGG
T ss_pred hhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCc
Confidence 3345577887 9999999999999999999941 1 1 122221 2223455554 3455667
Q ss_pred HHHHHHHHHHHHHHHHhCC------CCCCHHHHHHHHH
Q 007367 476 ADLQNLMNEAAILAARRDL------KEISKDEISDALE 507 (606)
Q Consensus 476 aDL~~Lv~eA~~~A~rr~~------~~It~edl~~Al~ 507 (606)
+.|++++..++.....+-. -.|+.+.+.+.+.
T Consensus 394 R~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 394 RRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 431 (444)
T ss_dssp GHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcC
Confidence 7777777776666555421 1367777766554
No 131
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.45 E-value=0.00015 Score=77.97 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=63.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeechhhH------HH--HHhhh---------------
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASEF------VE--LFVGV--------------- 345 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---------g~pfi~vs~se~------~~--~~~G~--------------- 345 (606)
|+....-++|+||||+|||+|++.++... +...++++..+. .. ...|.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 33444568999999999999999776432 233566654331 00 00110
Q ss_pred ----hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 346 ----GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 346 ----~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
....+..+........|.+|+||++-.+....-.+ .++..++++.+.+++..+..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 00112223333445678999999998876432111 11223445555666666655543445566666554
No 132
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.43 E-value=0.00019 Score=74.15 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=63.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---------------C----CCeeeechhhH--HH----HH--hhh-------
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---------------G----VPFFSCAASEF--VE----LF--VGV------- 345 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---------------g----~pfi~vs~se~--~~----~~--~G~------- 345 (606)
....-++|+|+||+|||++|..++..+ | .++++++...- .+ .. .|.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLD 175 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence 344568999999999999999998753 2 46666665431 11 10 110
Q ss_pred --------hhH----HHHHHHHHHHc-CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 007367 346 --------GAS----RVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (606)
Q Consensus 346 --------~~~----~vr~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIa 412 (606)
... .+..+....+. ..+.+|+||.+..+....-.+. +...++++.+.+++..+..+....++.||.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~vi~ 254 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVVLV 254 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 001 11223344444 6688999999999875321110 111233445666666665554344555555
Q ss_pred e
Q 007367 413 A 413 (606)
Q Consensus 413 a 413 (606)
+
T Consensus 255 ~ 255 (322)
T 2i1q_A 255 T 255 (322)
T ss_dssp E
T ss_pred E
Confidence 4
No 133
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.42 E-value=0.00025 Score=74.64 Aligned_cols=29 Identities=31% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
|+....-+.|+||+|+|||+|++.++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444568999999999999999999876
No 134
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.36 E-value=0.00013 Score=90.47 Aligned_cols=78 Identities=23% Similarity=0.268 Sum_probs=53.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH----HHHhhh--------hhHHHHHHHHHHH----
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV----ELFVGV--------GASRVRDLFEKAK---- 358 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~----~~~~G~--------~~~~vr~lF~~A~---- 358 (606)
|......++|+||||+|||+||..+|.++ +.++++++..+-. ....|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35666789999999999999999998765 5577777765432 122221 1113344444443
Q ss_pred cCCCeEEEEccccchhh
Q 007367 359 SKAPCIVFIDEIDAVGR 375 (606)
Q Consensus 359 ~~aP~ILfIDEID~L~~ 375 (606)
...|++|+||+++.+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999963
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.34 E-value=0.00045 Score=70.66 Aligned_cols=60 Identities=27% Similarity=0.327 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 275 DQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 275 d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
++..+.+.+++..+... ......|..++|+||||+||||+++.++.+.+..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45555566655543221 1223456789999999999999999999988555666776554
No 136
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.31 E-value=0.00013 Score=68.45 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
++.|+|+|+||+|||++++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999988754
No 137
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.31 E-value=0.0024 Score=63.45 Aligned_cols=161 Identities=26% Similarity=0.340 Sum_probs=81.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh-----HHHHHhhh---------------hhHHHHHHHHHHHcC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE-----FVELFVGV---------------GASRVRDLFEKAKSK 360 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se-----~~~~~~G~---------------~~~~vr~lF~~A~~~ 360 (606)
.+++.|+||+|||+++-.+|..+ |..++.++... ......+. .+..+..++. .
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----A 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----c
Confidence 68999999999999999888764 66655444321 11111110 1123333322 3
Q ss_pred CCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC--C----------------CCccc
Q 007367 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR--P----------------DVLDS 422 (606)
Q Consensus 361 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~--p----------------~~LD~ 422 (606)
.|.+++|||+-..... ...+...-+.+..++. .++=|++|+|- . +.++.
T Consensus 84 ~pdlvIVDElG~~~~~-----~~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAP-----GSRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCT-----TCSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCcc-----cchhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 6889999998764111 1112222223322222 23446777772 2 23444
Q ss_pred cccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007367 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (606)
Q Consensus 423 aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~La~~t~G~SgaDL~~Lv~eA~~~A~ 490 (606)
.+++ +.|.+.-++.|..+ +++.+...+....+..-..+... |+...|..|-+-|....+
T Consensus 151 ~~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTAA 209 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHHH
Confidence 5554 55666677777654 33333333333222222222222 666666665554554443
No 138
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.30 E-value=0.00037 Score=72.71 Aligned_cols=110 Identities=15% Similarity=0.237 Sum_probs=59.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-----CCCeeeechhhHHH----HHhhh-----------hhHHH-HHHHHH---HHc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEFVE----LFVGV-----------GASRV-RDLFEK---AKS 359 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~-----g~pfi~vs~se~~~----~~~G~-----------~~~~v-r~lF~~---A~~ 359 (606)
-++|+||||+|||+|+-.++.++ +..+++++..+-.. ...|. ....+ -.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 46899999999999988775543 56677777643111 11111 11111 222223 245
Q ss_pred CCCeEEEEccccchhhccC-CC-CCC---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 007367 360 KAPCIVFIDEIDAVGRQRG-AG-LGG---GNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (606)
Q Consensus 360 ~aP~ILfIDEID~L~~~r~-~~-~~~---~~~e~~~~Ln~LL~eld~~~~~~~ViVIaa 413 (606)
..|.+|+||-|..+.++.. .+ .+. ++....+.+++.|..|..+-...++.+|.+
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 6899999999999975321 11 110 011234456666655544433344444443
No 139
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.27 E-value=0.0032 Score=69.87 Aligned_cols=165 Identities=10% Similarity=0.089 Sum_probs=91.0
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHH----hcCCC-----eeeechh------
Q 007367 272 AGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG----EAGVP-----FFSCAAS------ 336 (606)
Q Consensus 272 ~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~----e~g~p-----fi~vs~s------ 336 (606)
+|.++.+++|.+.+..-. ....+.|.|+|+.|+|||+||+.+++ ..... ++.++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499988777766653211 12245789999999999999999996 23222 2333331
Q ss_pred hHHHHH---hhhh-------------hHHHHHHHHHHHcCC-CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHh
Q 007367 337 EFVELF---VGVG-------------ASRVRDLFEKAKSKA-PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (606)
Q Consensus 337 e~~~~~---~G~~-------------~~~vr~lF~~A~~~a-P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~el 399 (606)
.+.... .+.. ...+...+...-... +++|+||+++... +. .+.. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------------~~--~~~~-~ 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------------TI--RWAQ-E 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------------HH--HHHH-H
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------------hh--cccc-c
Confidence 111111 1110 011233333343443 8999999997641 11 1111 1
Q ss_pred ccCCCCCcEEEEEeeCCCCCccccccCCCccccccccCCCCHHHHHHHHHHHhcCCCCCCcc--cHHHHHHhCCCC
Q 007367 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV--DFEKISRRTPGF 473 (606)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv--dl~~La~~t~G~ 473 (606)
.+..||.||....... .. +..+..+.++..+.++-.++|..+........+. ....|++.+.|.
T Consensus 264 ------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 264 ------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp ------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred ------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 3446777777543211 11 1133568899999999999999875433211111 245566666653
No 140
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.25 E-value=0.00066 Score=67.66 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 275 DQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 275 d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
++.+..+.+++..+..... ....|..++|.|+||+|||++++.++..++.+++.++...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~----~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGKK----SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCC----CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccCC----cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3444445555544322211 23456789999999999999999999999866677777665
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.00018 Score=67.63 Aligned_cols=35 Identities=34% Similarity=0.529 Sum_probs=30.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
...|.-|+|+|+||+||||+++.++..++.+++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34567799999999999999999999999887653
No 142
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.0013 Score=63.96 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=26.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh----cCCCeeeech
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGE----AGVPFFSCAA 335 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e----~g~pfi~vs~ 335 (606)
....-++|+|+||+|||++|..+|.+ .+.++++++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 34456899999999999999877543 3666766654
No 143
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.20 E-value=0.00054 Score=69.10 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
....-++|+||+|+|||+|++.++..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 33456899999999999999999864
No 144
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.00021 Score=68.42 Aligned_cols=32 Identities=38% Similarity=0.507 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.+.++|+|+||+|||++++.+++.++.+++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 45799999999999999999999999988754
No 145
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.19 E-value=9.8e-05 Score=70.66 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~---g~pfi~v 333 (606)
-++++||+|+|||+++..++..+ +.+++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999996666543 5554443
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.10 E-value=0.00028 Score=66.21 Aligned_cols=36 Identities=33% Similarity=0.591 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
..|+|+|+||+|||++|+.++..+|.+++. ..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~ 38 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIE 38 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHH
Confidence 358999999999999999999999998765 444433
No 147
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.09 E-value=0.00072 Score=62.47 Aligned_cols=31 Identities=32% Similarity=0.703 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
+..+.|+||+|+||||+++.+|+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3468999999999999999999999876653
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.06 E-value=0.00041 Score=65.18 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=32.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
..+..+.|.||+|+||||+++.+++..+.+.+.++..++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 3445689999999999999999999877777777766553
No 149
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.06 E-value=0.00037 Score=64.00 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
-|+|.|+||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4799999999999999999999998887654
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.02 E-value=0.001 Score=72.26 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=28.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeech
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~ 335 (606)
|.....-++|.|+||+|||+++..+|... |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34445568999999999999999987743 557766654
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.02 E-value=0.00084 Score=68.12 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=26.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeee
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSC 333 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~v 333 (606)
+....-++|.||||+|||+|++.++... |.+++++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3444568999999999999999998754 4355444
No 152
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.01 E-value=0.00083 Score=66.49 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=43.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh-------HHHHHhhh-----hhHHHHHHHHHHHc----CCCeE
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE-------FVELFVGV-----GASRVRDLFEKAKS----KAPCI 364 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se-------~~~~~~G~-----~~~~vr~lF~~A~~----~aP~I 364 (606)
-++++|++|+|||+++..++..+ +..++.+.... +.+. .|. ......++++.++. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 46889999999999998887655 55555553211 1110 111 01123456666665 35789
Q ss_pred EEEccccch
Q 007367 365 VFIDEIDAV 373 (606)
Q Consensus 365 LfIDEID~L 373 (606)
|+|||++.+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999876
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.01 E-value=0.0004 Score=64.98 Aligned_cols=32 Identities=34% Similarity=0.679 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
+..|+|+|+||+|||++++.++..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999999887754
No 154
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.00 E-value=0.001 Score=62.34 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=17.5
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARA 321 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArA 321 (606)
+.-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34588999999999999994
No 155
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.99 E-value=0.00041 Score=64.12 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
..++|+|+||||||++++.+|..+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4789999999999999999999999998754
No 156
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.98 E-value=0.0042 Score=69.44 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=54.7
Q ss_pred eEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC--CccccccCCCccccccccCCCC
Q 007367 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVDRPD 440 (606)
Q Consensus 363 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~~Pd 440 (606)
.+|+|||++.+.... ..+.+..+.++..+ ...-+|.+|.+|.+|. .|+..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999886532 12344445555443 3456899999999998 78888877 677888899999
Q ss_pred HHHHHHHHH
Q 007367 441 VAGRVKILQ 449 (606)
Q Consensus 441 ~~eR~~IL~ 449 (606)
..+...||.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888888874
No 157
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.98 E-value=0.00043 Score=64.68 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
..+.-|+|+|+||+|||++++.++..++.+++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3456799999999999999999999998766643
No 158
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.97 E-value=0.00036 Score=65.01 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
.++|.|+||+|||++++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988765
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.96 E-value=0.00043 Score=65.45 Aligned_cols=32 Identities=38% Similarity=0.613 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh-cCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE-AGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e-~g~pfi~v 333 (606)
+..++|+|+||+|||++++.++.. .|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999999 68777644
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.96 E-value=0.0023 Score=70.85 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=52.3
Q ss_pred CCe-EEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCC--CccccccCCCccccccccC
Q 007367 361 APC-IVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVD 437 (606)
Q Consensus 361 aP~-ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~v~ 437 (606)
-|. +|+|||+..+.... ..+.+..+..|... ...-++.+|.+|.++. .++..++. .|...|.+.
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 354 89999998875421 12233333333332 2234788899999987 58877776 787888899
Q ss_pred CCCHHHHHHHHH
Q 007367 438 RPDVAGRVKILQ 449 (606)
Q Consensus 438 ~Pd~~eR~~IL~ 449 (606)
..+..+...|+.
T Consensus 363 v~s~~dsr~ilg 374 (512)
T 2ius_A 363 VSSKIDSRTILD 374 (512)
T ss_dssp CSSHHHHHHHHS
T ss_pred cCCHHHHHHhcC
Confidence 999999888875
No 161
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.96 E-value=0.00054 Score=65.29 Aligned_cols=34 Identities=38% Similarity=0.579 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
..|..|+|+|+||+|||++++.++..++.+++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3456799999999999999999999999887654
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.95 E-value=0.0016 Score=65.25 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=32.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh---cCCCeeeechhhHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAASEFVE 340 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~se~~~ 340 (606)
+.-|+|+|+||+|||++|+.++.. .|.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 446899999999999999999997 788888667666543
No 163
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.92 E-value=0.00084 Score=75.32 Aligned_cols=97 Identities=27% Similarity=0.405 Sum_probs=55.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH----HHhhhhhHHHHHHHHHH---------HcCCCeEEE
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----LFVGVGASRVRDLFEKA---------KSKAPCIVF 366 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~----~~~G~~~~~vr~lF~~A---------~~~aP~ILf 366 (606)
+.++|+|+||||||+++++++..+ +.+++.+..+.-.. ...+.....+..++... .....++|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999997743 56665553322111 11222223333333111 011347999
Q ss_pred EccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 367 IDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
|||+..+.. ..+..|+..+ .....+++++-.+.
T Consensus 285 IDEasml~~--------------~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMGD--------------ALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCCH--------------HHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCCCH--------------HHHHHHHHhC---cCCCEEEEEecccc
Confidence 999988721 2444454433 34556777775554
No 164
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.90 E-value=0.00044 Score=63.96 Aligned_cols=30 Identities=33% Similarity=0.455 Sum_probs=24.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-hcCCCee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAG-EAGVPFF 331 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~-e~g~pfi 331 (606)
|.-|+|.|+||+||||+|+.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 55689999999999999999998 4554444
No 165
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.90 E-value=0.0013 Score=69.60 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=56.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCeeeech-hhH--------H-HHHhhhhhHHHHHHHHHHHcCCCeEEEEcc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA-SEF--------V-ELFVGVGASRVRDLFEKAKSKAPCIVFIDE 369 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~-se~--------~-~~~~G~~~~~vr~lF~~A~~~aP~ILfIDE 369 (606)
.+++.||+|+||||+.+++++.. +..++.+.- .++ . ....+.....+.+.+..+-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 47999999999999999998854 222222110 000 0 000111122345577777788999999999
Q ss_pred ccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 370 IDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 370 ID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
+-. ..+...++.... .+..||.++...+.+
T Consensus 205 p~d----------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 205 MRD----------------LETIRLALTAAE-----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCS----------------HHHHHHHHHHHH-----TTCEEEEEESCSSHH
T ss_pred CCC----------------HHHHHHHHHHHh-----cCCEEEEEEccChHH
Confidence 941 123333344332 234688888876643
No 166
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00049 Score=64.36 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
|.-|+|+|+||+||||+++.++..++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 456899999999999999999999998765 444444
No 167
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.89 E-value=0.00067 Score=64.70 Aligned_cols=32 Identities=31% Similarity=0.658 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
+.-|+|+|++|+||||+++.|++.+|.+++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 55799999999999999999999998777653
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.88 E-value=0.0017 Score=70.32 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=29.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeech
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~ 335 (606)
|..+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 44555568999999999999999887643 567776654
No 169
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.86 E-value=0.0043 Score=61.28 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=29.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechh-hHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS-EFVEL 341 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s-e~~~~ 341 (606)
.++++||+|+|||.++.+++...+.+++.+... ++...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q 148 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQ 148 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHH
Confidence 479999999999999999998887776666543 44443
No 170
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.86 E-value=0.00058 Score=62.98 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
+.|+|+|+||+|||++++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988765
No 171
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.84 E-value=0.00052 Score=62.58 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
-++|+|+||+||||+++.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887754
No 172
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.82 E-value=0.00066 Score=63.84 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
+.-|+|.|+||+||||+++.++..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45689999999999999999999999876644
No 173
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.78 E-value=0.00078 Score=67.42 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeech
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~ 335 (606)
-++|+||||+|||++|+.||++.+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887654
No 174
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.76 E-value=0.00077 Score=65.25 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
+..|+|.|+||+||||+++.+|..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999876543
No 175
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.76 E-value=0.0033 Score=61.12 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=64.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeee---ch------hhHHHHHh-----------------hhhhHHHHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSC---AA------SEFVELFV-----------------GVGASRVRDLF 354 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~---g~pfi~v---s~------se~~~~~~-----------------G~~~~~vr~lF 354 (606)
.|++|+++|.|||++|-.+|-.+ |.++..+ .+ ..+...+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58999999999999999987655 6665555 22 12333320 00123345555
Q ss_pred HHHHc----CCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCccccccCCCcc
Q 007367 355 EKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRF 430 (606)
Q Consensus 355 ~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRF 430 (606)
+.++. ...++|+|||+-....-.- - ....++..+.. .....-||.|+|.+. +.|+. .-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~-------l----~~~ev~~~l~~--Rp~~~~vIlTGr~ap---~~l~e--~A 171 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY-------L----PLEEVISALNA--RPGHQTVIITGRGCH---RDILD--LA 171 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS-------S----CHHHHHHHHHT--SCTTCEEEEECSSCC---HHHHH--HC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC-------C----CHHHHHHHHHh--CcCCCEEEEECCCCc---HHHHH--hC
Confidence 55544 4578999999965432110 0 11234444442 234467788888754 55554 44
Q ss_pred cccccc
Q 007367 431 DRQVTV 436 (606)
Q Consensus 431 d~~I~v 436 (606)
|.+-++
T Consensus 172 D~VTem 177 (196)
T 1g5t_A 172 DTVSEL 177 (196)
T ss_dssp SEEEEC
T ss_pred cceeee
Confidence 443333
No 176
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.75 E-value=0.00066 Score=63.18 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi 331 (606)
|.-|+|+|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999887
No 177
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.74 E-value=0.0011 Score=61.83 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=31.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF 338 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~ 338 (606)
.+.-+.|+|++|+||||+++.++..+ |.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34568899999999999999999987 889988775443
No 178
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.74 E-value=0.00073 Score=63.65 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
+.-|+|+|+||+|||++++.++..++.+++. ..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS--TGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc--HHHHH
Confidence 4568999999999999999999999876654 44443
No 179
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.74 E-value=0.00072 Score=65.87 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.+.-|+|.|+||+||||+++.|+..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 356799999999999999999999998776643
No 180
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.73 E-value=0.00063 Score=63.61 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
..++|+|+||+||||+++.++..++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 458999999999999999999999876654
No 181
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.72 E-value=0.00072 Score=65.58 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
+..|+|.|+||+||||+++.||..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999999877654
No 182
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.70 E-value=0.00086 Score=64.54 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.|+|+|+||+||||+++.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998877654
No 183
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.69 E-value=0.0047 Score=63.89 Aligned_cols=74 Identities=27% Similarity=0.292 Sum_probs=46.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH-------HHHh---h----------hhhHHHHHHHH
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-------ELFV---G----------VGASRVRDLFE 355 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~-------~~~~---G----------~~~~~vr~lF~ 355 (606)
...+.-++|+||+|+||||++..+|..+ +..+..+++..+. ..|. + .......+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3456789999999999999999998754 4455544443221 1111 1 01111233455
Q ss_pred HHHcCCCeEEEEccccc
Q 007367 356 KAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 356 ~A~~~aP~ILfIDEID~ 372 (606)
.+....|.+|+||+...
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 55667789999998854
No 184
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.69 E-value=0.00073 Score=63.08 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
.-++|+|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.68 E-value=0.0046 Score=63.82 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=28.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeech
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~ 335 (606)
|..+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 34444568999999999999999998654 456666554
No 186
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.67 E-value=0.00098 Score=63.39 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
+.-|+|+|+||+|||++++.++.+++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 45689999999999999999999998766654
No 187
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.67 E-value=0.00081 Score=65.21 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
.|..|+|.|+||+||||+++.+|..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34579999999999999999999999976654
No 188
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.67 E-value=0.00092 Score=64.23 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.|+|+|+||+||||+|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998877654
No 189
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.66 E-value=0.0085 Score=65.10 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=48.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH-------HHHh---h----------hhhHHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-------ELFV---G----------VGASRVRDLFEKA 357 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~-------~~~~---G----------~~~~~vr~lF~~A 357 (606)
.|.-++++|++|+||||++..+|..+ |..+..+++..+. ..|. + .....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754 5555555543221 1110 1 1123345677778
Q ss_pred HcCCCeEEEEccccch
Q 007367 358 KSKAPCIVFIDEIDAV 373 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L 373 (606)
+...+++++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777789999988544
No 190
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.66 E-value=0.00097 Score=61.26 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
.|+|+|+||+|||++++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47999999999999999999999988764
No 191
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.65 E-value=0.0056 Score=66.38 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHH-------HHH---hhh----------hhHHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-------ELF---VGV----------GASRVRDLFEKA 357 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~-------~~~---~G~----------~~~~vr~lF~~A 357 (606)
.|.-++++|++|+||||++..+|..+ |..+..+++..+. ..+ .+. .....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46788999999999999999998754 5555555443111 111 111 111233455556
Q ss_pred HcCCCeEEEEccccch
Q 007367 358 KSKAPCIVFIDEIDAV 373 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L 373 (606)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567889999988654
No 192
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.64 E-value=0.001 Score=66.04 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.|.-|+|+||||+||||+++.++.+++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 466799999999999999999999998776643
No 193
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.62 E-value=0.0011 Score=64.90 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
+..|+|.|+||+||||+++.||.+++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999776653
No 194
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.61 E-value=0.0016 Score=65.72 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=41.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC----CCeeeechhh----------HH-HHHhhhhhHHHHHHHHHHHcCCCeEEEE
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAASE----------FV-ELFVGVGASRVRDLFEKAKSKAPCIVFI 367 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g----~pfi~vs~se----------~~-~~~~G~~~~~vr~lF~~A~~~aP~ILfI 367 (606)
.-++|+||+|+||||+.+++++... ..++.. ... +. ...++.....++..+..+-...|.+|++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc-CCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 3589999999999999999988541 222111 100 00 0001111123455666666678999999
Q ss_pred cccc
Q 007367 368 DEID 371 (606)
Q Consensus 368 DEID 371 (606)
||.-
T Consensus 105 DEp~ 108 (261)
T 2eyu_A 105 GEMR 108 (261)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9984
No 195
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.59 E-value=0.0043 Score=60.91 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
..-+.|.||+|+|||||.+++++...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34578999999999999999998653
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.58 E-value=0.0015 Score=60.68 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
..++|+|++|+|||++++.+++.+|.+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 468999999999999999999988876654
No 197
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.57 E-value=0.0014 Score=64.64 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
+.|+-|+|.||||+||+|.|+.|+...+++. ++..+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 4567789999999999999999999998765 45556554
No 198
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.54 E-value=0.0016 Score=62.25 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
.+.-+.|.||+|+||||+++.+++..|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 34568999999999999999999999765543
No 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.52 E-value=0.0044 Score=73.81 Aligned_cols=43 Identities=30% Similarity=0.302 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 007367 272 AGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 272 ~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
+|.+...++|.+.+.... ..+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899988777777654221 1356899999999999999999863
No 200
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.49 E-value=0.00094 Score=70.64 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.++|+|+||+|||++++++|+.++.+|+.+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 689999999999999999999999888663
No 201
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.49 E-value=0.0018 Score=67.59 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=45.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeechh-hH-----HHH--HhhhhhHHHHHHHHHHHcCCCeEEEEccccc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAAS-EF-----VEL--FVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~s-e~-----~~~--~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~ 372 (606)
..++|.||+|+|||||++++++.... -.+.+... ++ ... ++..+..+.+..+..+-...|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 35899999999999999999986531 12222211 10 000 1100334567777888888999999999853
No 202
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.44 E-value=0.003 Score=60.22 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
..+.|.|++|+||||+++.+++ +|.+++ +..++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 3578999999999999999998 787776 44444
No 203
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.43 E-value=0.0049 Score=65.36 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=43.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC----CCeeeechh-hH--------HHH-HhhhhhHHHHHHHHHHHcCCCeEE
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAAS-EF--------VEL-FVGVGASRVRDLFEKAKSKAPCIV 365 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g----~pfi~vs~s-e~--------~~~-~~G~~~~~vr~lF~~A~~~aP~IL 365 (606)
.....++|+||+|+||||+++++++... ..++.+... ++ +.. .+|.....++..+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3344689999999999999999988542 222221110 00 000 011112234555666666789999
Q ss_pred EEcccc
Q 007367 366 FIDEID 371 (606)
Q Consensus 366 fIDEID 371 (606)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999993
No 204
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.42 E-value=0.0038 Score=60.11 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=30.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHHHhh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~~~G 344 (606)
-|.|+|++||||||+++.++..+|++++. +.++.....+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHHHHHH
Confidence 47899999999999999999988987764 5555544333
No 205
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.41 E-value=0.0022 Score=59.78 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCeeeechhhHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFV 339 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~se~~ 339 (606)
-|+|.|+||+||||+++.++..++ .++..++.+++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 489999999999999999999775 345555544443
No 206
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.37 E-value=0.0017 Score=62.57 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 379999999999999999999998777654
No 207
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.36 E-value=0.002 Score=67.29 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechh
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s 336 (606)
+++.++|+||+|+|||++++.+|.+++.+++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 345789999999999999999999999888877654
No 208
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.34 E-value=0.0028 Score=60.47 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF 338 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~ 338 (606)
.+.-+.|.||+|+||||+++++++.+ |...+.++..++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34568999999999999999999987 544345555443
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.34 E-value=0.0023 Score=61.75 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
..+.|.||+|+||||+++.+++.+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458999999999999999999999987764
No 210
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.32 E-value=0.0024 Score=59.58 Aligned_cols=31 Identities=23% Similarity=0.105 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeeec
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs 334 (606)
-+.|+|++|+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 88888754
No 211
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.27 E-value=0.0024 Score=62.29 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
.++|.||||+||+|.|+.|+...|++.+ +..++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHHH
Confidence 3789999999999999999999987665 5555543
No 212
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.27 E-value=0.02 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
+.+++++|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999998877654
No 213
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.27 E-value=0.002 Score=61.34 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.|.|+|++|+||||+++.+++ .|++++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 88777654
No 214
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.23 E-value=0.0034 Score=59.45 Aligned_cols=30 Identities=40% Similarity=0.670 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.+.|.|++|+|||++++.+++.+|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999888754
No 215
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.22 E-value=0.0031 Score=62.14 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
|.-+.|.||+|+||||+++.|+..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5679999999999999999999998876543
No 216
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.22 E-value=0.0029 Score=59.79 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCeeeec
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCA 334 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi~vs 334 (606)
+.-|.|.|++|+||||+++.++..+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57776554
No 217
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.21 E-value=0.01 Score=64.94 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=29.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeech
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~ 335 (606)
|.....-++|.|+||+|||+++..+|... |.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 44555568999999999999999987754 557776654
No 218
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.21 E-value=0.0025 Score=59.97 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
-|.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987764
No 219
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.18 E-value=0.0031 Score=62.57 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCee--------eechhhHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFF--------SCAASEFV 339 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi--------~vs~se~~ 339 (606)
.|.-|.|.|++|+|||++|+.|+..++.+++ .++..++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3556899999999999999999999988743 46666554
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.16 E-value=0.003 Score=59.59 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=29.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
|..|.|+|++|+|||++++.++.. |.+++ +..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~ 43 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAA 43 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHH
Confidence 456899999999999999999998 77766 4455543
No 221
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.12 E-value=0.0023 Score=60.95 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=25.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi 331 (606)
+.-|+|+|++|+||||+++.++..++.+++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 557899999999999999999998755433
No 222
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.10 E-value=0.0031 Score=61.43 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
-++|.|+||+||||+++.++..++.+++ +..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHH
Confidence 3799999999999999999999987655 444443
No 223
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.07 E-value=0.017 Score=63.71 Aligned_cols=109 Identities=18% Similarity=0.122 Sum_probs=62.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh----HHHH----------H--hh------------hhh
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE----FVEL----------F--VG------------VGA 347 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se----~~~~----------~--~G------------~~~ 347 (606)
+.....++|.||+|+|||+|++.++... |.+.+++...+ +... + .| .+.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 3444568999999999999999998754 44444443221 1110 0 00 123
Q ss_pred HHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCC
Q 007367 348 SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (606)
Q Consensus 348 ~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p 417 (606)
...+.++..+....|.+|+||=+..+... ....+....+..++..+.. .++.+|.++...
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~~------~~~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALARG------VSNNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHTSS------SCHHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHHhh------CChHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 35566777777788999999966555321 0112234445556655542 234455555443
No 224
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.07 E-value=0.0039 Score=58.47 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeee
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSC 333 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~---g~pfi~v 333 (606)
|.|.|++|+||||+++.++..+ |.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 7899999999999999999988 8888754
No 225
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.06 E-value=0.013 Score=65.92 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-++++|+||||||+++..+...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999988877543
No 226
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.04 E-value=0.021 Score=58.60 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeech
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~ 335 (606)
.+..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45678999999999999999998743 545555544
No 227
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.00 E-value=0.027 Score=53.09 Aligned_cols=19 Identities=37% Similarity=0.326 Sum_probs=15.8
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARA 321 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArA 321 (606)
+.+++.+|+|+|||+.+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5699999999999987443
No 228
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.99 E-value=0.0027 Score=60.44 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGV 328 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~ 328 (606)
|.-|+|+|++|+||||+++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999987643
No 229
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.98 E-value=0.014 Score=58.00 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~ 340 (606)
-+-|.|+||+||||+++.|+..++++++ +..++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 3678999999999999999999998776 4445443
No 230
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.93 E-value=0.0047 Score=61.49 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
|..+.|.||+|+|||++++.|++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999999999999999977654
No 231
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.93 E-value=0.038 Score=53.94 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVA 323 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA 323 (606)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 568999999999998776654
No 232
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.91 E-value=0.011 Score=56.86 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
+-|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999997654
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.91 E-value=0.0081 Score=57.41 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
..++-++|+||||+|||++++.++...+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456789999999999999999999874
No 234
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.91 E-value=0.0034 Score=63.50 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCeeeechhhHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASEFVE 340 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi~vs~se~~~ 340 (606)
|.-++|.|+||+||||+++.++.+. +.+++ +...+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i--~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI--NRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE--CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe--cccHHHH
Confidence 4568999999999999999999874 55544 4444443
No 235
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.90 E-value=0.014 Score=63.32 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=29.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeech
Q 007367 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (606)
Q Consensus 298 G~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~ 335 (606)
|..+..-++|.|+||+|||++|..+|... |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 44455568999999999999999887654 667776654
No 236
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.84 E-value=0.0088 Score=57.57 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
+.-+.|.||+|+|||++++.+++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998763
No 237
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.84 E-value=0.005 Score=58.24 Aligned_cols=28 Identities=18% Similarity=0.085 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVP 329 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~p 329 (606)
+.-|+|.|+||+||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468999999999999999999988763
No 238
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.83 E-value=0.045 Score=55.55 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||++++++-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 347899999999999999998743
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.82 E-value=0.01 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.+-+.|.||+|+|||||++.+++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999865
No 240
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0057 Score=61.38 Aligned_cols=31 Identities=39% Similarity=0.734 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
..+.|.|++|+|||++++.+|+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 3589999999999999999999999887754
No 241
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.78 E-value=0.0052 Score=58.99 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
|..+.|+|++|+|||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34689999999999999999999999887653
No 242
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.78 E-value=0.007 Score=58.18 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEF 338 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~ 338 (606)
.+.-++|.|++|+|||++++.+++.+ |.+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34568999999999999999999865 466777776554
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.77 E-value=0.0087 Score=56.07 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se 337 (606)
.+.-++|+|++|+|||++++.++..+ +.++..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 34568999999999999999999876 44455555443
No 244
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.76 E-value=0.024 Score=62.47 Aligned_cols=110 Identities=20% Similarity=0.216 Sum_probs=59.9
Q ss_pred CCceEEEEcCCCChHHHHHHH--HHHhc--CCCeeeechhhHH----H----------HHhh------h-----------
Q 007367 301 IPKGCLLVGPPGTGKTLLARA--VAGEA--GVPFFSCAASEFV----E----------LFVG------V----------- 345 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArA--IA~e~--g~pfi~vs~se~~----~----------~~~G------~----------- 345 (606)
....++|.||+|+|||+|++. +++.. +-.-++++..+.. . .+.. .
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 345689999999999999999 44432 3334444332210 0 0000 0
Q ss_pred -----hhHHHHHHHHHHHcCCCeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCC
Q 007367 346 -----GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (606)
Q Consensus 346 -----~~~~vr~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~ 419 (606)
-...............|.+|+|||+-.+... .+.+......+..++..+.. .++.||.+|++.+.
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIEE 187 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSS
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCC
Confidence 0112233344445567889999999776432 01122344455666666542 23456666776654
No 245
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.76 E-value=0.012 Score=63.18 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
.|.-|+|+|+||+|||++|+.++..++..++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 356789999999999999999999998766543
No 246
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.75 E-value=0.005 Score=58.81 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=26.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi~v 333 (606)
+.-+.|+|++|+||||+++.+++.. +++++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 3457899999999999999999987 6655543
No 247
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.70 E-value=0.038 Score=55.73 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||+|+|||||++++++-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998743
No 248
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.70 E-value=0.006 Score=58.69 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~v 333 (606)
+.-|.|+|++|+||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 88776643
No 249
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.66 E-value=0.011 Score=56.75 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
.+.-+.|.||+|+|||||++.|++.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999998764
No 250
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.64 E-value=0.0056 Score=64.25 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=30.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s 336 (606)
++-++|.||+|+|||+|+..||.+++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999999888776554
No 251
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.63 E-value=0.058 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..+.|.||.|+|||||.+.+++-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998843
No 252
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.59 E-value=0.028 Score=58.87 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=28.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeech
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~ 335 (606)
..+..-++|.|+||+|||+++..+|..+ +.++.+++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3444568999999999999999997753 666665544
No 253
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.59 E-value=0.023 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.++-+.|.||+|+|||+|+++|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999999865
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.57 E-value=0.0071 Score=62.84 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=31.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
.|+-++|.||+|+|||+||..+|...+..++.++.-.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 45678999999999999999999999888877665443
No 255
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.56 E-value=0.025 Score=62.61 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCeeeechhhHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFVEL 341 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~se~~~~ 341 (606)
|.-|+|+|.||+|||++|+.++..++ ++...++..++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 45689999999999999999999874 44455666665543
No 256
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.56 E-value=0.12 Score=49.38 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=33.5
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCCC---CCceEEEEcCCCChHHHHHHHHHHh
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK---IPKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~---~p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.+|+|+.-.++..+.|.+. -+..+..++..... ..+.+++.+|+|+|||+.+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688876555555555431 13333333322111 1256999999999999876655443
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.54 E-value=0.0091 Score=58.48 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
.+..+.|.|++|+|||++++.+++.+|++++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34568999999999999999999999987764
No 258
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.52 E-value=0.055 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.+++..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998853
No 259
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.52 E-value=0.026 Score=55.02 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=32.8
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLARA 321 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LArA 321 (606)
....+|+|+.-.+...+.|.+. -+..+..++.... ...+.+++++|+|+|||+.+-.
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred CccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 3456799986555554444321 1333333333211 1235799999999999986443
No 260
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.48 E-value=0.077 Score=53.89 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=32.3
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCC----CCCceEEEEcCCCChHHHHHHHHHHh
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGA----KIPKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~----~~p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.+|+++.-.+...+.|.+. .+..+..++.... .-.+.+++.+|+|+|||+.+-..+-+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4577765555555444431 1222222222211 11357999999999999986655443
No 261
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.47 E-value=0.021 Score=60.56 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.-+-|.||+|+|||||.|+|++-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 34789999999999999999884
No 262
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.47 E-value=0.037 Score=65.31 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=54.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh-----cCCCe--------------eeechhhHHHHHhhhhhHHHHHHHHHHH-cCC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE-----AGVPF--------------FSCAASEFVELFVGVGASRVRDLFEKAK-SKA 361 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e-----~g~pf--------------i~vs~se~~~~~~G~~~~~vr~lF~~A~-~~a 361 (606)
...++|+||.|+||||+.|.++.- .|..+ -.+...+............++++...++ ...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 456899999999999999998742 22211 0111111111111111111222222221 467
Q ss_pred CeEEEEccccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCCCCCc
Q 007367 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (606)
Q Consensus 362 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~p~~L 420 (606)
|++|++||.-+=. ...........++..+.. ..+..+|.+|+..+..
T Consensus 753 p~LlLLDEP~~Gl---------D~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 753 QSLVILDELGRGT---------STHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVC 799 (918)
T ss_dssp TCEEEEESTTTTS---------CHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGG
T ss_pred CCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHH
Confidence 8999999985421 112233344466666531 2345788888886643
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.44 E-value=0.0084 Score=56.61 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.+.-+.|.||+|+||||+++.+++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999999876
No 264
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.43 E-value=0.0073 Score=61.26 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~ 339 (606)
|.-|.|+|++|+||||+++.++ +.|++++ ++.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHHH
Confidence 4568999999999999999999 6787665 444553
No 265
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.43 E-value=0.01 Score=59.00 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
..+.|.||+|+||||+++.||..+|.+++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 358899999999999999999999987653
No 266
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.40 E-value=0.019 Score=54.75 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~s 336 (606)
.+.-+.|.|++|+|||++++.+++.+ +.+++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 34568999999999999999999865 5666555433
No 267
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.39 E-value=0.056 Score=52.32 Aligned_cols=54 Identities=22% Similarity=0.133 Sum_probs=30.7
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHHH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LAr 320 (606)
..+|+++.-.+...+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 34688876555555555431 1233333332111 123579999999999998643
No 268
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.38 E-value=0.061 Score=51.41 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=31.1
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLA 319 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LA 319 (606)
..+|+++.-.+...+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 45788876555555555432 1333333332211 12357999999999999873
No 269
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.36 E-value=0.15 Score=56.06 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...+..++|.|++|+||||+++.|++.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3445678999999999999999999864
No 270
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.35 E-value=0.01 Score=63.22 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
-+.|.||+|+|||||.|.|++-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999843
No 271
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.29 E-value=0.039 Score=58.29 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-+.|.||+|+|||||.|+|++-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999999984
No 272
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.24 E-value=0.032 Score=59.20 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.-+.|.||+|+|||||.|.||+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 34789999999999999999984
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.23 E-value=0.0096 Score=56.79 Aligned_cols=30 Identities=37% Similarity=0.479 Sum_probs=25.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG--VPFF 331 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g--~pfi 331 (606)
+.-+.|.||+|+||||+++.+++..+ +.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 44588999999999999999999876 5444
No 274
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.16 E-value=0.012 Score=55.10 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~ 338 (606)
-++|.||+|+||||+++.+++..+. .+.++..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 234444444
No 275
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.13 E-value=0.012 Score=61.93 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeech
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~ 335 (606)
.-|+|.||+|+|||++|+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468999999999999999999999876665543
No 276
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.04 E-value=0.035 Score=57.36 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..-+.|.||+|+|||||++.|++..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3458999999999999999998843
No 277
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.02 E-value=0.055 Score=63.95 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~ 324 (606)
.-++|+||.|+|||++.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999843
No 278
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.01 E-value=0.014 Score=60.74 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s 336 (606)
+-++|.||+|+|||+|+..+|...+..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999988777665544
No 279
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.01 E-value=0.021 Score=54.58 Aligned_cols=25 Identities=36% Similarity=0.690 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
++-+.|.||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999865
No 280
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.95 E-value=0.035 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.-+.|.||+|+|||||.|.|++-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 34789999999999999999984
No 281
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.95 E-value=0.038 Score=57.36 Aligned_cols=37 Identities=32% Similarity=0.285 Sum_probs=28.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeech
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~ 335 (606)
...++.++++|++|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456789999999999999999998754 455554443
No 282
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.94 E-value=0.049 Score=57.56 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-+.|.||+|+|||||.|.|++-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999999984
No 283
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.94 E-value=0.11 Score=49.77 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=32.6
Q ss_pred cCCCCccccccccch-HHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHHH
Q 007367 261 VPETGVTFADVAGAD-QAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 261 ~~~~~~tf~DI~G~d-~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LAr 320 (606)
.+++..+|+|..+.. +..+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 455567888855544 333333321 1333333333211 123579999999999998654
No 284
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.94 E-value=0.015 Score=56.06 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999984
No 285
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.90 E-value=0.047 Score=52.44 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=40.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh---HHH----HHhhhh-----hHHHHHHHHHHHcCCCeEEEE
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE---FVE----LFVGVG-----ASRVRDLFEKAKSKAPCIVFI 367 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se---~~~----~~~G~~-----~~~vr~lF~~A~~~aP~ILfI 367 (606)
+-.+++||+|+|||+.+-.++..+ +..++.+...- ..+ ...|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 357899999999999888887765 55555543110 000 011110 0112345554432 3579999
Q ss_pred ccccch
Q 007367 368 DEIDAV 373 (606)
Q Consensus 368 DEID~L 373 (606)
||++-+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999887
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.88 E-value=0.015 Score=54.71 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
+-+.|.||+|+||||+++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999865
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.84 E-value=0.017 Score=54.53 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||+|+||||+++.+++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 288
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.83 E-value=0.017 Score=55.95 Aligned_cols=69 Identities=22% Similarity=0.181 Sum_probs=41.6
Q ss_pred ceEEEEcCCCChHH-HHHHHHHH--hcCCCeeeechh---hHHHH---Hhhh-----hhHHHHHHHHHHHcCCCeEEEEc
Q 007367 303 KGCLLVGPPGTGKT-LLARAVAG--EAGVPFFSCAAS---EFVEL---FVGV-----GASRVRDLFEKAKSKAPCIVFID 368 (606)
Q Consensus 303 ~gVLL~GPPGTGKT-~LArAIA~--e~g~pfi~vs~s---e~~~~---~~G~-----~~~~vr~lF~~A~~~aP~ILfID 368 (606)
+-.++|||.|+||| .|.+++.+ +.+..++.+... .+.+. ..|. ......++++..+. ..+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~--~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG--VAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHT--CSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccC--CCEEEEE
Confidence 34789999999999 89998866 346666666533 11111 1111 01122334443332 4699999
Q ss_pred cccch
Q 007367 369 EIDAV 373 (606)
Q Consensus 369 EID~L 373 (606)
|++-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99887
No 289
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.79 E-value=0.14 Score=48.08 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=15.5
Q ss_pred ceEEEEcCCCChHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LAr 320 (606)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 290
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.78 E-value=0.014 Score=56.87 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=26.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
.++++|.||+|+|||+||..++...+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46799999999999999999998866 655544
No 291
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.76 E-value=0.024 Score=64.24 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF 338 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~ 338 (606)
.+.-|+|+|.||+||||+|++++..+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 35568999999999999999999998 999998876544
No 292
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.76 E-value=0.08 Score=61.35 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..+++.||+|+|||+++..+..+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999977777554
No 293
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.74 E-value=0.073 Score=55.42 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999864
No 294
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.69 E-value=0.049 Score=66.77 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|+||+|+|||+|++.+.++.
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 458899999999999999999865
No 295
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.66 E-value=0.074 Score=57.51 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=46.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeechhhHH----HH---Hh---h---------h-hhHHHHHHHH
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFV----EL---FV---G---------V-GASRVRDLFE 355 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~se~~----~~---~~---G---------~-~~~~vr~lF~ 355 (606)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+. +. +. + . ....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999887644 6666666554211 11 10 1 0 1122355677
Q ss_pred HHHcCCCeEEEEccccch
Q 007367 356 KAKSKAPCIVFIDEIDAV 373 (606)
Q Consensus 356 ~A~~~aP~ILfIDEID~L 373 (606)
.++.....+++||=...+
T Consensus 178 ~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHTTCSEEEEECCCCC
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 766555679999875443
No 296
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.66 E-value=0.21 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.4
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAV 322 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAI 322 (606)
++.+++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 468999999999999876544
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.62 E-value=0.016 Score=59.24 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
..|.-|.|.|++|+||||+++.|++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456789999999999999999988764
No 298
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.61 E-value=0.12 Score=50.23 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCCCccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHHH
Q 007367 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 262 ~~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LAr 320 (606)
+.+-.+|+++.-.+...+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CCccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 34445677764444444433321 1222332222111 113579999999999998754
No 299
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.50 E-value=0.12 Score=50.07 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=30.5
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLA 319 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LA 319 (606)
....+|+++.-.+...+.|.+. -+..+..++.... ...+.+++.+|+|+|||+.+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 3456788875555555544431 1333333332211 12357999999999999864
No 300
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.47 E-value=0.075 Score=59.64 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...+.|.||+|+|||||++.+++..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3458899999999999999998844
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.47 E-value=0.023 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=15.9
Q ss_pred CceEEEEcCCCChHHHHHHHHH-Hhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVA-GEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA-~e~ 326 (606)
..-+.|.||+|+||||+++.++ +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3457899999999999999999 764
No 302
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.43 E-value=0.13 Score=59.74 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
...++|+||.|+|||++.|.++.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 346899999999999999999863
No 303
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.39 E-value=0.12 Score=52.84 Aligned_cols=73 Identities=30% Similarity=0.285 Sum_probs=45.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh----H---HHHHh---hh---------hh-HHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE----F---VELFV---GV---------GA-SRVRDLFEKA 357 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se----~---~~~~~---G~---------~~-~~vr~lF~~A 357 (606)
.++.+.++|++|+|||++++.+|..+ +..+..+++.- . ...+. +. .. ...+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999998754 44444443321 0 00110 10 11 2235566666
Q ss_pred HcCCCeEEEEccccch
Q 007367 358 KSKAPCIVFIDEIDAV 373 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L 373 (606)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5556789999998554
No 304
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.37 E-value=0.11 Score=54.30 Aligned_cols=32 Identities=41% Similarity=0.582 Sum_probs=24.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCeeeech
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~----g~pfi~vs~ 335 (606)
++++..|+|+|||+.+-.++.+. +.+++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 68999999999999888776554 555555554
No 305
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.33 E-value=0.087 Score=56.94 Aligned_cols=36 Identities=36% Similarity=0.298 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechh
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~s 336 (606)
.|+.++++|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46789999999999999999998865 4555555543
No 306
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.23 E-value=0.089 Score=52.84 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=24.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeech
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~ 335 (606)
+.+++.+|+|+|||+.+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 468999999999999877766666655555543
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.21 E-value=0.025 Score=55.68 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVP 329 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~p 329 (606)
.-+-|.||+|+||||+++.+++.+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 347899999999999999999987754
No 308
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.17 E-value=0.12 Score=49.35 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=15.8
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARA 321 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArA 321 (606)
+.+++.+|+|+|||+.+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5689999999999986443
No 309
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.17 E-value=0.37 Score=49.52 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=31.2
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHHHHHHH
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LArAIA~ 324 (606)
.+|+++.-.+...+.|.+. -+..+..++.... ...+.+++.+|+|+|||+.+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 3577765455554444431 1233333332211 1135799999999999987654443
No 310
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.15 E-value=0.015 Score=64.21 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=43.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCeeeechhh-HHH---HH--------hhhhhHHHHHHHHHHHcCCCeEEEE
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE-FVE---LF--------VGVGASRVRDLFEKAKSKAPCIVFI 367 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g--~pfi~vs~se-~~~---~~--------~G~~~~~vr~lF~~A~~~aP~ILfI 367 (606)
..+++|.||+|+||||+++++++... ...+.+.... +.- .+ .+.....+.+++..+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 34689999999999999999998763 2233332211 100 00 0111123455566666678999999
Q ss_pred cccc
Q 007367 368 DEID 371 (606)
Q Consensus 368 DEID 371 (606)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9984
No 311
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.13 E-value=0.086 Score=59.92 Aligned_cols=20 Identities=50% Similarity=0.634 Sum_probs=16.9
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAV 322 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAI 322 (606)
+.++++||+|+|||+.+-..
T Consensus 41 ~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHH
Confidence 57899999999999988433
No 312
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.13 E-value=0.025 Score=60.72 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeec
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs 334 (606)
.-++|.||+|+|||+|+..+|...+..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 45789999999999999999998877665544
No 313
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.13 E-value=0.053 Score=57.27 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456678999999999999999999865
No 314
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.10 E-value=0.17 Score=52.65 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=32.8
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHHHHHH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLARAVA 323 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LArAIA 323 (606)
..+|+++.-.+...+.|.+. -+..+..++.... ...+.+++.+|+|+|||+.+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 45788876555555554331 1333333332211 113569999999999997665443
No 315
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.07 E-value=0.054 Score=55.68 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...+.-+.|.||+|+||||+++.+|+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999999865
No 316
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.05 E-value=0.029 Score=54.45 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||+|+|||||++.|++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999876
No 317
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.05 E-value=0.051 Score=60.72 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||+|+|||||++.+++..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 458899999999999999998854
No 318
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.03 E-value=0.11 Score=58.21 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..-+.|.||+|+|||||++.+++..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3458899999999999999998854
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.02 E-value=0.091 Score=53.85 Aligned_cols=72 Identities=28% Similarity=0.240 Sum_probs=45.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH-------HHHHh---hh----------hhHHHHHHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF-------VELFV---GV----------GASRVRDLFEKAK 358 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~-------~~~~~---G~----------~~~~vr~lF~~A~ 358 (606)
+.-+++.|++|+|||+++..+|..+ +..+..+++.-+ ...+. +. ....+++.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6678899999999999999998765 555555544311 11111 00 1122345666666
Q ss_pred cCCCeEEEEccccch
Q 007367 359 SKAPCIVFIDEIDAV 373 (606)
Q Consensus 359 ~~aP~ILfIDEID~L 373 (606)
.....+++||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 455679999986544
No 320
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.00 E-value=0.15 Score=58.04 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=16.8
Q ss_pred CceEEEEcCCCChHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LAr 320 (606)
.+.++++||+|+|||+.+-
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5689999999999999874
No 321
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.95 E-value=0.033 Score=53.24 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
..-+.|.||+|+|||||+++|++...
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999999763
No 322
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.92 E-value=0.18 Score=52.22 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=32.2
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCC---CCceEEEEcCCCChHHHHHHHHH
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK---IPKGCLLVGPPGTGKTLLARAVA 323 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~---~p~gVLL~GPPGTGKT~LArAIA 323 (606)
..+|+|+.-.+...+.|.+. -+..+..++..... ..+.+++.+|+|+|||+.+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 46788886555555544431 12223333222111 12569999999999998665443
No 323
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.88 E-value=0.042 Score=51.11 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..+.|.||.|+|||+|+|.+++..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 347899999999999999999976
No 324
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.84 E-value=0.13 Score=55.91 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCeeeechhh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASE 337 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~se 337 (606)
+..|+|+|.||+|||++++.++..++ .+...++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 45789999999999999999998764 3444444333
No 325
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.81 E-value=0.13 Score=56.60 Aligned_cols=36 Identities=25% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeech
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~ 335 (606)
..|+.|+|+|++|+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999999999999999998654 555655555
No 326
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.79 E-value=0.16 Score=57.65 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=18.2
Q ss_pred CCceEEEEcCCCChHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAV 322 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAI 322 (606)
..+.++++||+|+|||+.+-..
T Consensus 45 ~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEcCCCCcHHHHHHHH
Confidence 3568999999999999988543
No 327
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.79 E-value=0.18 Score=56.99 Aligned_cols=32 Identities=38% Similarity=0.715 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHHHh---cCCCeeeechh
Q 007367 305 CLLVGPPGTGKTLLARAVAGE---AGVPFFSCAAS 336 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~s 336 (606)
.||+||||||||+++-.+..+ .+.+++.+..+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 599999999999755444332 25566655543
No 328
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.77 E-value=0.2 Score=54.04 Aligned_cols=73 Identities=30% Similarity=0.282 Sum_probs=44.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhH-------HHHHh---hh---------h-hHHHHHHHHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF-------VELFV---GV---------G-ASRVRDLFEKA 357 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~-------~~~~~---G~---------~-~~~vr~lF~~A 357 (606)
.|..++++|++|+||||++..+|..+ +..+..+++.-+ ...+. +. . ....++.++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999998765 445544443211 11111 10 0 12225566766
Q ss_pred HcCCCeEEEEccccch
Q 007367 358 KSKAPCIVFIDEIDAV 373 (606)
Q Consensus 358 ~~~aP~ILfIDEID~L 373 (606)
+....++++||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5455679999865443
No 329
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.77 E-value=0.017 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998774
No 330
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.73 E-value=0.034 Score=53.16 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeechhh
Q 007367 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se 337 (606)
+|++|++|+|||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 699999999999999999988 88888877643
No 331
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.70 E-value=0.035 Score=54.66 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
-|.|.|++|||||++++.+|..+|++|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999999865
No 332
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.68 E-value=0.27 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=18.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
+.+++.+|+|+|||+.+-..+.+
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 35899999999999887665543
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.66 E-value=0.11 Score=54.10 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
..|.-+.|.||+|+||||+++.+++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456789999999999999999998764
No 334
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=93.59 E-value=0.12 Score=44.56 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=42.4
Q ss_pred CcccchHHHH-HHHHcCCccEEEEEeCCcEEEEEEeCCc------eEEEEcCCChHHHHHHH----hCCce
Q 007367 140 GSQWRYSEFL-NAVKKGKVERVRFSKDGSALQLTAVDGR------RATVIVPNDPDLIDILA----MNGVD 199 (606)
Q Consensus 140 ~~~~~y~~f~-~~~~~~~v~~v~~~~~~~~~~~~~~~~~------~~~~~~p~~~~~~~~l~----~~~~~ 199 (606)
..+|+|++|. ++|++|.|++|.+. +...+.+..+.+. .+.+.+++-..|.+.|. +.|++
T Consensus 15 ~~eIs~~eF~~~~L~kG~V~kI~V~-nk~~v~V~l~~~a~~~~~~~~~f~IGSvd~FE~~Le~aQ~el~i~ 84 (99)
T 2lna_A 15 GREITWKDFVNNYLSKGVVDRLEVV-NKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQELGIE 84 (99)
T ss_dssp SEECCHHHHHHHTGGGTCEEEEEEE-TTTEEEEEECTTTSCSTTCCEEEECSCHHHHHHHHHHHHHHTTCC
T ss_pred CcccCHHHHHHHHhhCCCceEEEEE-cCCEEEEEEcCCCcCCCCceEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999 79999999999986 5556777665442 35777877665555553 45553
No 335
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.52 E-value=0.044 Score=61.40 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=31.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC----CCeeeechhhH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAASEF 338 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g----~pfi~vs~se~ 338 (606)
.+..|+|+|++|+|||++|++|+..++ .+++.++...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 345789999999999999999999875 78888876554
No 336
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.52 E-value=0.049 Score=57.28 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=43.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeech-hhH--------------HHHHhhh-hhHHHHHHHHHHHcCCCe
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAA-SEF--------------VELFVGV-GASRVRDLFEKAKSKAPC 363 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~--pfi~vs~-se~--------------~~~~~G~-~~~~vr~lF~~A~~~aP~ 363 (606)
...++|.||+|+|||||++++++.... -.+.+.. .++ .....+. ....+++.+..+....|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 346899999999999999999986531 1222211 000 0000110 222456777777778899
Q ss_pred EEEEccccc
Q 007367 364 IVFIDEIDA 372 (606)
Q Consensus 364 ILfIDEID~ 372 (606)
.+++||+..
T Consensus 255 ~~l~~e~r~ 263 (361)
T 2gza_A 255 RILLAELRG 263 (361)
T ss_dssp EEEESCCCS
T ss_pred EEEEcCchH
Confidence 999999753
No 337
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.49 E-value=0.047 Score=56.40 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCe
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF 330 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~pf 330 (606)
+.....+.|+||+|+|||+|++.|++.....+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 33445689999999999999999998764333
No 338
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.49 E-value=0.38 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=18.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
+.+++.+|+|+|||+.+-..+.+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46899999999999887666543
No 339
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.48 E-value=0.027 Score=57.51 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=24.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC---CCeeeechhhH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEF 338 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g---~pfi~vs~se~ 338 (606)
.-|.|+||+|+||||+++.++..++ ..+..+++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3588999999999999999998765 33444555444
No 340
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.46 E-value=0.21 Score=55.46 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..-+-|.||.|+|||||+++|++..
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999843
No 341
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.42 E-value=0.18 Score=52.39 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=30.4
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHHHHH
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLARAV 322 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LArAI 322 (606)
.+|+++.-.+...+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-..
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHH
Confidence 4677765555555444331 1223333322211 11346899999999999875433
No 342
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.34 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+-|.||.|+|||||.+.|++..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 357899999999999999999854
No 343
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.40 E-value=0.082 Score=51.69 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeechhhHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~se~~~~ 341 (606)
-.|-|+|..|||||++++.++. .|++++. +..+...
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vid--aD~ia~~ 45 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVD--TDLIAHR 45 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEE--HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEE--CcHHHHH
Confidence 3689999999999999999998 8988874 4444433
No 344
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.38 E-value=0.22 Score=55.23 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=31.5
Q ss_pred CCCccccccccchHHHHHHHHHHHH--hcCchhhhhcCC-----CCCceEEEEcCCCChHHHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDF--LKNPDKYTALGA-----KIPKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~--Lk~p~~~~~lG~-----~~p~gVLL~GPPGTGKT~LAr 320 (606)
..+.+|+++.........+.+.+.. +..+..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHH
Confidence 4456777776332233334444432 222333332211 134579999999999998533
No 345
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.31 E-value=0.23 Score=54.37 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.9
Q ss_pred CceEEEEcCCCChHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LAr 320 (606)
.+.+|+.+|+|+|||+.+-
T Consensus 111 ~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCccHHHH
Confidence 4689999999999998533
No 346
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.26 E-value=0.072 Score=58.24 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.++|+|++|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 47999999999999999887653
No 347
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.083 Score=48.87 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...|++.|++|+|||+|..++.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998754
No 348
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.22 E-value=0.11 Score=55.71 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeechh-hHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS-EFVE 340 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~vs~s-e~~~ 340 (606)
.++|++|+|+|||..+-.++...+.+.+.+... .+..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 489999999999999988888887777766554 4443
No 349
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.22 E-value=0.055 Score=53.11 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=24.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG--VPFF 331 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g--~pfi 331 (606)
+.-+.|.|++|+||||+++.+++.++ .+++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 34578999999999999999999875 4544
No 350
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.19 E-value=0.14 Score=50.20 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=37.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeechhh--------HHHHHhhhh-----hHHHHHHHHHHHcCCCeEEEEc
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE--------FVELFVGVG-----ASRVRDLFEKAKSKAPCIVFID 368 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se--------~~~~~~G~~-----~~~vr~lF~~A~~~aP~ILfID 368 (606)
.+++|+.|+|||+.+-.++..+ +..++.+...- +.+. .|.. .....++++.+. ....+|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~-~g~~~~a~~~~~~~~~~~~~~-~~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSH-NGLKVKAVPVSASKDIFKHIT-EEMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhh-cCCeeEEeecCCHHHHHHHHh-cCCCEEEEE
Confidence 4689999999999888776644 65655553211 1110 1110 011123343333 235799999
Q ss_pred cccch
Q 007367 369 EIDAV 373 (606)
Q Consensus 369 EID~L 373 (606)
|+.-+
T Consensus 109 EaQF~ 113 (214)
T 2j9r_A 109 EVQFF 113 (214)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99887
No 351
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.19 E-value=0.1 Score=56.08 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=33.4
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 265 ~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
..+++++.-..+.+..|+++ +..+ ...++|.||+|+||||+.+++++...
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l---~~~~----------ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL---IKRP----------HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH---HTSS----------SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHH---HHhc----------CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 46777775444444444444 1111 12479999999999999999998763
No 352
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.18 E-value=0.2 Score=57.98 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
...++|+||.|+|||++.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 346899999999999999999863
No 353
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.17 E-value=0.18 Score=51.84 Aligned_cols=55 Identities=16% Similarity=0.074 Sum_probs=31.4
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcCCC---CCceEEEEcCCCChHHHHHH
Q 007367 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK---IPKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 264 ~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~---~p~gVLL~GPPGTGKT~LAr 320 (606)
...+|+++.-.+...+.|... -+..+..++..... ..+.+++.+|+|+|||+.+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 346788875555555444431 12333333322111 13568999999999998743
No 354
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.16 E-value=0.12 Score=57.41 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=29.5
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 007367 272 AGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 272 ~G~d~~K~eL~eiv~~Lk~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.-.+.+.+.+..++..+... .+.+|+++|+|+|||..+-.++..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHH
Confidence 34455666666666554321 246899999999999998777654
No 355
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.10 E-value=0.24 Score=59.17 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.5
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVA 323 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA 323 (606)
...++|+||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568999999999999999983
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.05 E-value=0.057 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
+.-+.|.||+|+|||||++.|++..+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44688999999999999999999765
No 357
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.98 E-value=0.29 Score=48.11 Aligned_cols=53 Identities=19% Similarity=0.131 Sum_probs=29.1
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHHH
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LAr 320 (606)
.+|+++.-.+...+.|.+. -+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 43 ~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 4677775444444433321 1223333332211 123679999999999998644
No 358
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.97 E-value=0.061 Score=51.36 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCe
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPF 330 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~pf 330 (606)
.+|+||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 468999999999999999999874 4433
No 359
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.94 E-value=0.18 Score=49.97 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.7
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARA 321 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArA 321 (606)
+.+++++|+|+|||+.+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 4589999999999986543
No 360
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.91 E-value=0.15 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
+.-|.|+|+||+|||+++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998764
No 361
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.90 E-value=0.15 Score=56.89 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC----CCeeeechhhHHH
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAASEFVE 340 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~g----~pfi~vs~se~~~ 340 (606)
....+.|.|++|+||||++++|++.++ ..+..++...+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 345689999999999999999999874 3454566665543
No 362
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.84 E-value=0.056 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.+.|.||+|+||||+++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999865
No 363
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.77 E-value=0.19 Score=54.61 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
-+-.++.|+||||||++...++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 345789999999999999888753
No 364
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.23 Score=55.96 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 007367 305 CLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 305 VLL~GPPGTGKT~LArAIA~e~ 326 (606)
+.|.||.|+|||||++.|++..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999999854
No 365
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.60 E-value=0.074 Score=50.25 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...-+.|.|++|+|||++++.+...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568999999999999999998764
No 366
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.56 E-value=0.54 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
-+-|.||.|+|||||.+.|++..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998854
No 367
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.52 E-value=0.25 Score=52.83 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLA 319 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LA 319 (606)
+.+|++||+|+|||+.+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 46899999999999875
No 368
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.49 E-value=0.074 Score=51.97 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
|+-|.|.|++|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999983
No 369
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.40 E-value=0.48 Score=45.83 Aligned_cols=18 Identities=39% Similarity=0.576 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LAr 320 (606)
+.+++.+|+|+|||+.+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 468999999999998643
No 370
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.37 E-value=0.038 Score=54.89 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=25.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCee
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA-GVPFF 331 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~-g~pfi 331 (606)
+.-|.|.|++|+||||+++.|+..+ +..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4568999999999999999999998 54444
No 371
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.31 E-value=0.077 Score=54.76 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 300 KIPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 300 ~~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..+.-+.|.||+|+|||||++.|++..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 334568899999999999999999865
No 372
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.21 E-value=0.54 Score=48.79 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLA 319 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LA 319 (606)
.+-.+|+++.-.+...+.|... -+..+..++.... ...+.+++.+|+|+|||+.+
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 3445688875444454444321 1233333322211 12357999999999999743
No 373
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.17 E-value=0.087 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 007367 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 301 ~p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.+.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999865
No 374
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.14 E-value=0.18 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..|+|.|.+|+|||+|..++.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999764
No 375
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.09 E-value=0.59 Score=52.62 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||+++|++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999854
No 376
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.06 E-value=0.23 Score=49.39 Aligned_cols=90 Identities=22% Similarity=0.183 Sum_probs=47.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCCeeeech-------hhHHHHHhhhh-----hHHHHHHHHHHHcCCCeEEEEc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAA-------SEFVELFVGVG-----ASRVRDLFEKAKSKAPCIVFID 368 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~-------se~~~~~~G~~-----~~~vr~lF~~A~~~aP~ILfID 368 (606)
-.+++|+.|+|||+.+-..+.. .|..++.+.. ..+.+. .|.. .....++++.+ ....+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 4678999999999766655443 3544443321 111111 1110 01112355555 335799999
Q ss_pred cccchhhccCCCCCCCChhHHHHHHHHHHHhccCCCCCcEEEEEeeCC
Q 007367 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (606)
Q Consensus 369 EID~L~~~r~~~~~~~~~e~~~~Ln~LL~eld~~~~~~~ViVIaaTN~ 416 (606)
|+.-+. + +.+++..++. .++.||++.-+
T Consensus 98 EaQF~~-----------~-----v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 98 EGQFFP-----------D-----IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SGGGCT-----------T-----HHHHHHHHHH----TTCEEEEECCS
T ss_pred chhhhh-----------h-----HHHHHHHHHh----CCCEEEEEecc
Confidence 998871 1 4556666653 34566666554
No 377
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=92.05 E-value=0.38 Score=46.90 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.1
Q ss_pred ceEEEEcCCCChHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LAr 320 (606)
+.+++.+|+|+|||+.+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 468999999999998544
No 378
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.97 E-value=0.06 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..+.|.||+|+|||||.+.+++-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 358899999999999999999754
No 379
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=91.92 E-value=0.41 Score=48.64 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.8
Q ss_pred CceEEEEcCCCChHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLA 319 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LA 319 (606)
++.+++++|+|+|||+..
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 478999999999999864
No 380
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.91 E-value=0.13 Score=62.98 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+-|+|++|+|||||++.+.+-.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCc
Confidence 347899999999999999998743
No 381
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.90 E-value=0.062 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..-+.|.||+|+|||||.+.|++..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998853
No 382
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.87 E-value=0.071 Score=52.91 Aligned_cols=24 Identities=38% Similarity=0.829 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999854
No 383
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.86 E-value=0.31 Score=54.20 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeechhhHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~se~~~ 340 (606)
+.-|+|+|++|+|||++++.++..+ |.++..++...+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568999999999999999999875 45677777665543
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.78 E-value=0.1 Score=48.21 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
-.+|+||.|+|||+++++|..-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999988664
No 385
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.72 E-value=0.6 Score=49.70 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=30.7
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCChHHHHH
Q 007367 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLA 319 (606)
Q Consensus 263 ~~~~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LA 319 (606)
.+-.+|+++.-.+...+.|.+. -+..|..++.... ...+.+++++|+|+|||+..
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH
Confidence 3445788875444444444321 1333333333211 12357999999999999843
No 386
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.67 E-value=0.056 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.+++-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999754
No 387
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.57 E-value=0.068 Score=51.87 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-+.|.||.|+|||||++.+++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 388
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.52 E-value=0.16 Score=56.07 Aligned_cols=27 Identities=11% Similarity=-0.077 Sum_probs=24.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGV 328 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~ 328 (606)
+..|.|.|.+|+||||++++||..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999874
No 389
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.50 E-value=0.45 Score=51.02 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.4
Q ss_pred CceEEEEcCCCChHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LAr 320 (606)
++.+|+++|+|+|||+.+-
T Consensus 131 ~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCEEEEECCSSSSHHHHHH
T ss_pred CCcEEEEcCCCCchhHHHH
Confidence 5789999999999998743
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.39 E-value=0.12 Score=48.74 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999998764
No 391
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.27 E-value=0.078 Score=53.24 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+++++-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999999854
No 392
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.15 E-value=0.077 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.+++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999754
No 393
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.92 Score=54.63 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeeeech
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~ 335 (606)
+.+|++||.|+|||+.+-..+.+. +...+++..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 468999999999999876554433 444554443
No 394
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.04 E-value=0.18 Score=61.55 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+-|+||+|+|||||++.+++..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998854
No 395
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.04 E-value=0.13 Score=46.06 Aligned_cols=21 Identities=52% Similarity=0.911 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~ 324 (606)
-+++.|++|+|||+|.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 479999999999999999964
No 396
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.03 E-value=0.078 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.+.|.||.|+|||||.+.+++-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 397
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.02 E-value=0.1 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.-+.|.||.|+|||||.+.|++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999985
No 398
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.02 E-value=0.089 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+++++..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998853
No 399
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.01 E-value=0.12 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
-+.|.|++|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 400
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.01 E-value=0.086 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...+.|.||.|+|||||.+.|++..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3458899999999999999999754
No 401
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.00 E-value=0.12 Score=53.99 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVP 329 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~p 329 (606)
..-+.|.||+|+|||||++.|++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999999999976543
No 402
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.99 E-value=0.1 Score=51.83 Aligned_cols=23 Identities=39% Similarity=0.745 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.-+.|.||.|+|||||.+.+++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999985
No 403
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.99 E-value=0.089 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..+.|.|++|+|||||++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998875
No 404
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.87 E-value=0.12 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
-+.|.|++|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 405
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.87 E-value=0.09 Score=53.08 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.|++..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999854
No 406
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.82 E-value=0.091 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.+++-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 357899999999999999999854
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.81 E-value=0.095 Score=51.82 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.+++-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999854
No 408
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.78 E-value=0.39 Score=51.42 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-++|.||+|+|||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 358999999999999999998753
No 409
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.76 E-value=0.084 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.+++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999854
No 410
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.73 E-value=0.6 Score=55.38 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~ 324 (606)
.-+.|.||.|+|||||.+.|++
T Consensus 462 e~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999984
No 411
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.72 E-value=0.25 Score=48.66 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=35.8
Q ss_pred eEEEEcCCCChHHH-HHHHHHH--hcCCCeeeechh-hH------HHHHhhhh-----hHHHHHHHHHHHcCCCeEEEEc
Q 007367 304 GCLLVGPPGTGKTL-LARAVAG--EAGVPFFSCAAS-EF------VELFVGVG-----ASRVRDLFEKAKSKAPCIVFID 368 (606)
Q Consensus 304 gVLL~GPPGTGKT~-LArAIA~--e~g~pfi~vs~s-e~------~~~~~G~~-----~~~vr~lF~~A~~~aP~ILfID 368 (606)
-.+++||.|+|||+ |.+.+-+ +.+..++.+... +- +....|.. .....++++.. .....+|+||
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 35889999999999 5555422 335555444321 00 00001110 01112333322 2356799999
Q ss_pred cccch
Q 007367 369 EIDAV 373 (606)
Q Consensus 369 EID~L 373 (606)
|++-+
T Consensus 109 EaQFf 113 (219)
T 3e2i_A 109 EVQFF 113 (219)
T ss_dssp CGGGS
T ss_pred chhcC
Confidence 99887
No 412
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.70 E-value=0.37 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||||+|||+|.+++++..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999998754
No 413
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.68 E-value=0.086 Score=52.44 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||+|+|||||.+.|++-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998854
No 414
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=90.67 E-value=1.7 Score=50.03 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=23.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCeeeech
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA--------GVPFFSCAA 335 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~--------g~pfi~vs~ 335 (606)
+.+++++|.|+|||..+-..+.+. +.+++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 468999999999999877665443 555555544
No 415
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.61 E-value=0.46 Score=49.74 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=16.2
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAV 322 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAI 322 (606)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 46899999999999954444
No 416
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.60 E-value=0.13 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.+.|.||+|+|||||.+.|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 417
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.60 E-value=0.099 Score=52.55 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..+.|.||.|+|||||.+.|++-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998743
No 418
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.59 E-value=0.56 Score=48.40 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=30.0
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhcC-----CCCCceEEEEcCCCChHHHHHH
Q 007367 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALG-----AKIPKGCLLVGPPGTGKTLLAR 320 (606)
Q Consensus 266 ~tf~DI~G~d~~K~eL~eiv~~Lk~p~~~~~lG-----~~~p~gVLL~GPPGTGKT~LAr 320 (606)
.+|+++.-.+...+.|.+. -+..+..++... ...++.+++.+|+|+|||+.+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 4677765555554444331 122233222211 1124679999999999998753
No 419
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=90.56 E-value=1.3 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=18.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~ 324 (606)
+++++++|.|+|||+.+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 4689999999999998776654
No 420
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.56 E-value=0.46 Score=43.91 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
-|+|.|++|+|||+|...+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 421
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=90.55 E-value=0.55 Score=51.15 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.5
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 007367 302 PKGCLLVGPPGTGKTLLARA 321 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArA 321 (606)
.+.+|+++|+|+|||+.+-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 36799999999999987543
No 422
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.46 E-value=0.34 Score=47.00 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..|+|.|++|+|||+|..++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999999874
No 423
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.39 E-value=0.12 Score=54.39 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||+|+|||||.|.|++-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347899999999999999999843
No 424
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.38 E-value=0.094 Score=52.34 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..+.|.||.|+|||||.+.+++..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999999865
No 425
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.31 E-value=0.11 Score=54.69 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||+|+|||||.|.||+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 357899999999999999999843
No 426
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.27 E-value=0.11 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.+++..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347899999999999999999865
No 427
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.25 E-value=0.16 Score=45.01 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.+++.|++|+|||+|+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998753
No 428
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.05 E-value=0.14 Score=54.36 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||+|+|||||.|.|++-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 357899999999999999999843
No 429
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.83 E-value=0.17 Score=45.05 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|...+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 430
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.73 E-value=0.18 Score=49.08 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=24.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeee
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFS 332 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~ 332 (606)
.-|.|.|++|+||||+++.++..+ |.+++.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 347889999999999999998876 445543
No 431
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.71 E-value=0.22 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
...++|.|++|+|||+|+.++.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998854
No 432
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.65 E-value=1.2 Score=51.49 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=23.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeech
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs~ 335 (606)
|+.+|+.||.|+|||..+-..+-+. |...+.+..
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5678999999999999876554332 555555443
No 433
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.65 E-value=0.13 Score=51.69 Aligned_cols=24 Identities=42% Similarity=0.786 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.+++..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999864
No 434
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.65 E-value=0.18 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.+++.|++|+|||+|+..+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 435
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.64 E-value=0.16 Score=57.26 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=18.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
..++.||||||||+++..+...
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999987766543
No 436
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.59 E-value=0.11 Score=54.63 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.-+.|.||+|+|||||.|.||+-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 34789999999999999999984
No 437
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.59 E-value=0.85 Score=55.72 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..+-|+||+|+|||+|++.+++.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999874
No 438
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.57 E-value=0.18 Score=49.71 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=18.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-|.|.|++|+||||+++.++..+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999998876
No 439
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.54 E-value=0.2 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 440
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=89.52 E-value=0.66 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
+.+||+||+|+|||..+-.++..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHH
Confidence 35799999999999998766654
No 441
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.52 E-value=0.55 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..-+.|.|+||+|||+++..++...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998754
No 442
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.49 E-value=0.14 Score=47.40 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~ 324 (606)
-++|.|++|+|||+|.+.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999986
No 443
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.47 E-value=0.19 Score=48.82 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC-eeeechhhHH
Q 007367 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-FFSCAASEFV 339 (606)
Q Consensus 299 ~~~p~gVLL~GPPGTGKT~LArAIA~e~g~p-fi~vs~se~~ 339 (606)
..++.-|+|+|.||+||+++|+.+....+.. +..++.++-+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 3456689999999999999999998877521 3334555543
No 444
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.45 E-value=0.17 Score=45.90 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-+.|.|++|+|||+|.+.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999864
No 445
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.34 E-value=0.21 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..|++.|++|+|||+|.+.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 446
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=89.31 E-value=2.6 Score=49.66 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=24.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCeeeech
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA--------GVPFFSCAA 335 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~--------g~pfi~vs~ 335 (606)
+.+++.+|.|+|||+.+-..+.+. +.+.+.+..
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~P 304 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 468999999999999877776554 555555544
No 447
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.28 E-value=0.21 Score=44.42 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.|++.|++|+|||+|..++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999997643
No 448
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.26 E-value=0.19 Score=46.40 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
...|++.|++|+|||+|...+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999764
No 449
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.14 E-value=0.16 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.-+.|.||+|+|||||.+.|++-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 45899999999999999999973
No 450
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.12 E-value=0.22 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.|++.|++|+|||+|.+.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 451
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.12 E-value=0.18 Score=45.30 Aligned_cols=22 Identities=50% Similarity=0.791 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|.+.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999764
No 452
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=89.08 E-value=1.1 Score=53.45 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh---cCCCeeeech
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAA 335 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e---~g~pfi~vs~ 335 (606)
+++|+.+|.|+|||+++-..... .+...+++..
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~P 137 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 137 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECC
Confidence 46899999999999987543332 2555555554
No 453
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=88.92 E-value=0.93 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=17.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
+.++++||+|+|||+.+-....+
T Consensus 156 k~vlv~apTGSGKT~~al~~l~~ 178 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKYFS 178 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHh
Confidence 57999999999999965443333
No 454
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.89 E-value=0.21 Score=45.81 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-++|.|++|+|||+|.+.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 455
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.85 E-value=0.23 Score=44.37 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|.+.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 456
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.85 E-value=0.23 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|...+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 457
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.84 E-value=0.22 Score=44.37 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 458
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=88.81 E-value=0.21 Score=49.78 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~g~pfi~ 332 (606)
-+.|+|++|+|||++++.+....|.+.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~~ 31 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQ 31 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 36899999999999999999988987643
No 459
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.81 E-value=0.15 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||.+.|++..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 347899999999999999998854
No 460
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.76 E-value=0.22 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 461
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.75 E-value=0.24 Score=44.73 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..|++.|++|+|||+|...+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999764
No 462
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.66 E-value=0.25 Score=43.95 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|..++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 463
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.65 E-value=0.25 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
+.-+.|.|+.|+||||+++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345789999999999999999987
No 464
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.62 E-value=0.25 Score=43.89 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 465
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.61 E-value=0.25 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..|+|.|++|+|||+|...+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 466
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.57 E-value=0.76 Score=52.04 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.3
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 007367 303 KGCLLVGPPGTGKTLLARAV 322 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAI 322 (606)
.-+.|.||+|+|||||++.+
T Consensus 349 e~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEeeCCCCHHHHHHHH
Confidence 35889999999999999754
No 467
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.56 E-value=0.37 Score=47.07 Aligned_cols=28 Identities=25% Similarity=0.125 Sum_probs=24.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAGVP 329 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g~p 329 (606)
+.-|.|.|++|+|||++++.++..++.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3457899999999999999999988753
No 468
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.49 E-value=0.27 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
+.-|.|.|++|+|||++++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999998865
No 469
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.48 E-value=0.25 Score=44.59 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|.+.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 470
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.46 E-value=0.22 Score=44.60 Aligned_cols=21 Identities=43% Similarity=0.721 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~ 324 (606)
-|++.|++|+|||+|...+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 379999999999999999964
No 471
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.40 E-value=0.29 Score=48.13 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~g 327 (606)
+.-|.|.|++|+|||++++.++..++
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44578889999999999999988653
No 472
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.39 E-value=0.35 Score=45.83 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..++|.|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 473
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.33 E-value=1.1 Score=42.15 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|+|.|++|+|||+|...+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 474
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.22 E-value=0.28 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|...+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999764
No 475
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.21 E-value=0.24 Score=53.89 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.-+.|.||.|+|||||+|.|++..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 358999999999999999998854
No 476
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.20 E-value=0.31 Score=43.97 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
+..|++.|++|+|||+|...+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999763
No 477
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.18 E-value=0.28 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
..|++.|++|+|||+|.+.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
No 478
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.12 E-value=1 Score=54.39 Aligned_cols=33 Identities=24% Similarity=0.146 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHH---hcCCCeeeec
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAG---EAGVPFFSCA 334 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~---e~g~pfi~vs 334 (606)
|+.+|++||.|+|||.++-..+- ..+..++.+.
T Consensus 624 p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlv 659 (1151)
T 2eyq_A 624 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 659 (1151)
T ss_dssp CCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEEC
T ss_pred cCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEe
Confidence 56799999999999987654332 2344444443
No 479
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.09 E-value=0.36 Score=43.16 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
...|++.|++|+|||+|...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999763
No 480
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.07 E-value=0.28 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
-|+|.|++|+|||+|.+.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999887654
No 481
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.07 E-value=0.27 Score=44.26 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|...+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 482
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.05 E-value=0.28 Score=44.91 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
--|++.|++|+|||+|..++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 483
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.90 E-value=0.28 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|.+++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 484
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.89 E-value=0.29 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|.+.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 485
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.89 E-value=0.29 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.|++.|++|+|||+|+..+.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 486
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.82 E-value=0.3 Score=44.49 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 007367 304 GCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
.|++.|++|+|||+|..++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 487
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.71 E-value=0.26 Score=45.20 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-+.|.|++|+|||+|.+++.+.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 488
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.69 E-value=0.3 Score=45.04 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|+|.|++|+|||+|...+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 489
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.68 E-value=0.29 Score=45.01 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
.-|++.|++|+|||+|.+.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 490
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.62 E-value=0.31 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
.|++.|++|+|||+|...+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 491
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.61 E-value=0.32 Score=50.35 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCee
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~g~pfi 331 (606)
++++|.|++|+|||++|.++... |..++
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 58999999999999999999775 44443
No 492
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.50 E-value=0.72 Score=50.68 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=18.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e~ 326 (606)
+.+|+.+|+|+|||+.+..-+-..
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~ 64 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLL 64 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHS
T ss_pred CCEEEECCCCcHHHHHHHHHHHHh
Confidence 468999999999998665444333
No 493
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.47 E-value=0.3 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
-.|++.|++|+|||+|.+.+.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 494
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.43 E-value=0.29 Score=44.14 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 007367 304 GCLLVGPPGTGKTLLARAVAG 324 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~ 324 (606)
.|++.|++|+|||+|..++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999965
No 495
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.42 E-value=0.34 Score=45.16 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
...|+|.|++|+|||+|...+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999764
No 496
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.40 E-value=0.36 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 007367 303 KGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 303 ~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..|++.|++|+|||+|.+.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 497
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.40 E-value=0.15 Score=47.88 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e 325 (606)
..-+.|.|++|+|||+|.+++++.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999998754
No 498
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.28 E-value=0.47 Score=49.82 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=25.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeec
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~---g~pfi~vs 334 (606)
..++++.||+|+|||++++.++... +..++.++
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3478999999999999999987653 44444443
No 499
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.27 E-value=0.48 Score=46.18 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=24.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--CCCeeeec
Q 007367 302 PKGCLLVGPPGTGKTLLARAVAGEA--GVPFFSCA 334 (606)
Q Consensus 302 p~gVLL~GPPGTGKT~LArAIA~e~--g~pfi~vs 334 (606)
...+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4568899999999999999998654 44444333
No 500
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.14 E-value=0.28 Score=57.01 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=17.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 007367 304 GCLLVGPPGTGKTLLARAVAGE 325 (606)
Q Consensus 304 gVLL~GPPGTGKT~LArAIA~e 325 (606)
-.++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4699999999999987766543
Done!