BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007368
(606 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 520 bits (1338), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/419 (60%), Positives = 319/419 (76%), Gaps = 14/419 (3%)
Query: 130 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTG 189
VE +G N PP + +F+++++GE + NI +Y +PTPVQ+HAIPI RDLMACAQTG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 190 SGKTAAFCFPIISGI--------MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241
SGKTAAF PI+S I +R G R YP++L+LAPTREL+ QI++EA+
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 301
KFSY++ V+ V YGGA I QQ+R+LERG +LVATPGRLVD++ER ++ L +YL LD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 302 EADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGR 361
EADRMLDMGFEPQIR+IV+Q MPP GVR TM+FSATFPKEIQ LA DFL Y+FLAVGR
Sbjct: 183 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242
Query: 362 VGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWL 421
VGS+++ I Q+V +V ESDKRS L+DLL+A GK SLTLVFVETKKGAD+LE +L
Sbjct: 243 VGSTSENITQKVVWVEESDKRSFLLDLLNAT------GKDSLTLVFVETKKGADSLEDFL 296
Query: 422 YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPND 481
Y G+ T+IHGDR+Q++RE AL F+SGK+PILVAT VAARGLDI +V HV+NFDLP+D
Sbjct: 297 YHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSD 356
Query: 482 IDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 540
I++YVHRIGRTGR G GLAT+FFNE N+++ + L +L+ E+ QEVP+WL A +Y
Sbjct: 357 IEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHY 415
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/426 (45%), Positives = 289/426 (67%), Gaps = 16/426 (3%)
Query: 107 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPT 166
DA + F+ +GI+F Y +IPV+ +G +VP P+ F DL + + N+ + Y PT
Sbjct: 21 DAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPT 80
Query: 167 PVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALIL 226
P+Q+ +IP+ +GRDLMACAQTGSGKTAAF PI+S ++ + P P +I+
Sbjct: 81 PIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED-----PHELELGRPQVVIV 135
Query: 227 APTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE 286
+PTREL+ QI +EA+KF++++ +K+ + YGG Q + RG +++ATPGRL+D ++
Sbjct: 136 SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVD 195
Query: 287 RARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKL 346
R ++ + R++ LDEADRMLDMGF +R+I+ + M P QT++FSATFP+EIQ++
Sbjct: 196 RTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE--HQTLMFSATFPEEIQRM 253
Query: 347 ASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLV 406
A +FL NYVF+A+G VG + + Q + V++ KRS L+++L Q A+G T+V
Sbjct: 254 AGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ-ADG-------TIV 305
Query: 407 FVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLD 466
FVETK+GAD L +L FP T+IHGDR Q +RE ALR FK+G +L+AT VA+RGLD
Sbjct: 306 FVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD 365
Query: 467 IPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN-ENNLSLARPLAELMQESNQ 525
I ++ HV+N+D+P+ IDDYVHRIGRTGR G +G AT+FF+ E + ++A L ++++ S Q
Sbjct: 366 IKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQ 425
Query: 526 EVPAWL 531
VP +L
Sbjct: 426 TVPDFL 431
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/254 (53%), Positives = 183/254 (72%), Gaps = 3/254 (1%)
Query: 122 FDAYEDIPVETSGENVPPP--VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG 179
FD Y+ IPV +G + + F E+ L + NI Y +PTP+Q++AIP +
Sbjct: 1 FDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEH 60
Query: 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239
RD+MACAQTGSGKTAAF PII+ ++ + Q+ R ++T YP LILAPTREL+ QI E
Sbjct: 61 RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ-RYSKTAYPKCLILAPTRELAIQILSE 119
Query: 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 299
++KFS T ++ V YGGA + Q+RE++ G +LVATPGRLVD +E+ ++SL+ +Y+
Sbjct: 120 SQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179
Query: 300 LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359
LDEADRMLDMGFEPQIRKI+++ +MP RQT++FSATFPKEIQKLA+DFL NY+F+ V
Sbjct: 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239
Query: 360 GRVGSSTDLIVQRV 373
GRVGS++D I Q +
Sbjct: 240 GRVGSTSDSIKQEI 253
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/178 (60%), Positives = 139/178 (78%), Gaps = 6/178 (3%)
Query: 363 GSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLY 422
GS+++ I Q+V +V ESDKRS L+DLL+A GK SLTLVFVETKKGAD+LE +LY
Sbjct: 14 GSTSENITQKVVWVEESDKRSFLLDLLNAT------GKDSLTLVFVETKKGADSLEDFLY 67
Query: 423 MNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDI 482
G+ T+IHGDR+Q++RE AL F+SGK+PILVAT VAARGLDI +V HV+NFDLP+DI
Sbjct: 68 HEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 127
Query: 483 DDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 540
++YVHRIGRTGR G GLAT+FFNE N+++ + L +L+ E+ QEVP+WL A +Y
Sbjct: 128 EEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHY 185
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/365 (35%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGR-DLMACAQTGSGKTAAFCFPII 201
F E++L + + IR + KPT +Q IP+ + +++A A+TGSGKTA+F P+I
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 202 SGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPIN 261
+ ++ A+IL PTREL+ Q+ DE + +K+ YGG I
Sbjct: 67 ELVNENNGIE-----------AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIY 115
Query: 262 QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321
Q++ L + +I+V TPGR++D + R ++L+ ++Y LDEAD L+ GF + KI+
Sbjct: 116 PQIKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNA 174
Query: 322 MDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDK 381
+ ++ +LFSAT P+EI LA + +Y F+ ++ ++ I Q V+E+++
Sbjct: 175 CNKD----KRILLFSATXPREILNLAKKYXGDYSFIK-AKINAN---IEQSYVEVNENER 226
Query: 382 RSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERE 441
L LL K+ LVF +TK+ L L GF A IHGD +Q +RE
Sbjct: 227 FEALCRLLK--------NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQRE 278
Query: 442 LALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA 501
+R FK K IL+ATDV +RG+D+ + V+N+ LP + + Y HRIGRTGRAGK G A
Sbjct: 279 KVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKA 338
Query: 502 TAFFN 506
+ N
Sbjct: 339 ISIIN 343
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 221/421 (52%), Gaps = 38/421 (9%)
Query: 112 FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRH 171
E + T + F+ E++ +V P TF + L E+L I + KP+ +Q+
Sbjct: 17 LKEEDMTKVEFETSEEV-------DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQR 66
Query: 172 AIPISVAGRDLMACAQTGSGKTAAFCFPIISGI---MREQYVQRPRGARTVYPLALILAP 228
AI + GRD++A +Q+G+GKTA F ++ + +RE ALILAP
Sbjct: 67 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAP 113
Query: 229 TRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 288
TREL+ QI V+ GG + + +R+L+ G ++ TPGR+ D++ R
Sbjct: 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 173
Query: 289 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS 348
+ + I+ L LDEAD ML+ GF+ QI + + + PP Q +L SAT P EI ++ +
Sbjct: 174 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTN 229
Query: 349 DFLANYVFLAVGRVGSSTDLIVQRVEYVHESD-KRSHLMDLLHAQVANGVHGKQSLTLVF 407
F+ + + + V R + + I Q V + K L DL + ++F
Sbjct: 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI-------TQAVIF 282
Query: 408 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI 467
TK+ D L + F +++HGD Q+ERE ++ F+SG + +L++TDV ARGLD+
Sbjct: 283 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342
Query: 468 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEV 527
P V+ ++N+DLPN+ + Y+HRIGR+GR G+ G+A F +++ + R + + E+
Sbjct: 343 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 402
Query: 528 P 528
P
Sbjct: 403 P 403
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 221/421 (52%), Gaps = 38/421 (9%)
Query: 112 FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRH 171
E + T + F+ E++ +V P TF + L E+L I + KP+ +Q+
Sbjct: 18 LKEEDMTKVEFETSEEV-------DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQR 67
Query: 172 AIPISVAGRDLMACAQTGSGKTAAFCFPIISGI---MREQYVQRPRGARTVYPLALILAP 228
AI + GRD++A +Q+G+GKTA F ++ + +RE ALILAP
Sbjct: 68 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAP 114
Query: 229 TRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 288
TREL+ QI V+ GG + + +R+L+ G ++ TPGR+ D++ R
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 174
Query: 289 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS 348
+ + I+ L LDEAD ML+ GF+ QI + + + PP Q +L SAT P EI ++ +
Sbjct: 175 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTN 230
Query: 349 DFLANYVFLAVGRVGSSTDLIVQRVEYVHESD-KRSHLMDLLHAQVANGVHGKQSLTLVF 407
F+ + + + V R + + I Q V + K L DL + ++F
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI-------TQAVIF 283
Query: 408 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI 467
TK+ D L + F +++HGD Q+ERE ++ F+SG + +L++TDV ARGLD+
Sbjct: 284 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 343
Query: 468 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEV 527
P V+ ++N+DLPN+ + Y+HRIGR+GR G+ G+A F +++ + R + + E+
Sbjct: 344 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 403
Query: 528 P 528
P
Sbjct: 404 P 404
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 221/421 (52%), Gaps = 38/421 (9%)
Query: 112 FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRH 171
E + T + F+ E++ +V P TF + L E+L I + KP+ +Q+
Sbjct: 18 LKEEDMTKVEFETSEEV-------DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQR 67
Query: 172 AIPISVAGRDLMACAQTGSGKTAAFCFPIISGI---MREQYVQRPRGARTVYPLALILAP 228
AI + GRD++A +Q+G+GKTA F ++ + +RE ALILAP
Sbjct: 68 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAP 114
Query: 229 TRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 288
TREL+ QI V+ GG + + +R+L+ G ++ TPGR+ D++ R
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 174
Query: 289 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLAS 348
+ + I+ L LDEAD ML+ GF+ QI + + + PP Q +L SAT P EI ++ +
Sbjct: 175 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTN 230
Query: 349 DFLANYVFLAVGRVGSSTDLIVQRVEYVHESD-KRSHLMDLLHAQVANGVHGKQSLTLVF 407
F+ + + + V R + + I Q V + K L DL + ++F
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI-------TQAVIF 283
Query: 408 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI 467
TK+ D L + F +++HGD Q+ERE ++ F+SG + +L++TDV ARGLD+
Sbjct: 284 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 343
Query: 468 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEV 527
P V+ ++N+DLPN+ + Y+HRIGR+GR G+ G+A F +++ + R + + E+
Sbjct: 344 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 403
Query: 528 P 528
P
Sbjct: 404 P 404
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/406 (33%), Positives = 217/406 (53%), Gaps = 32/406 (7%)
Query: 128 IPVETSGE-NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACA 186
+ ETS E +V P TF + L E+L I + KP+ +Q+ AI + GRD++A +
Sbjct: 4 VEFETSEEVDVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQS 60
Query: 187 QTGSGKTAAFCFPIISGI---MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243
Q+G+GKTA F ++ + +RE ALILAPTREL+ QI
Sbjct: 61 QSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAPTRELAVQIQKGLLAL 107
Query: 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA 303
V+ GG + + +R+L+ G ++ TPGR+ D++ R + + I+ L LDEA
Sbjct: 108 GDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 167
Query: 304 DRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVG 363
D ML+ GF+ QI + + + PP Q +L SAT P EI ++ + F+ + + + V R
Sbjct: 168 DEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTNKFMTDPIRILVKRDE 223
Query: 364 SSTDLIVQRVEYVHESD-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLY 422
+ + I Q V + K L DL + ++F TK+ D L +
Sbjct: 224 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI-------TQAVIFCNTKRKVDWLTEKMR 276
Query: 423 MNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDI 482
F +++HGD Q+ERE ++ F+SG + +L++TDV ARGLD+P V+ ++N+DLPN+
Sbjct: 277 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 336
Query: 483 DDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVP 528
+ Y+HRIGR+GR G+ G+A F +++ + R + + E+P
Sbjct: 337 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 382
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 209/390 (53%), Gaps = 28/390 (7%)
Query: 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIIS 202
TF + L E+L I + KP+ +Q+ AI + GRD++A +Q+G+GKTA F ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 203 GI---MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAP 259
+ +RE ALILAPTREL+ Q+ V+ GG
Sbjct: 62 CLDIQVRETQ-------------ALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTN 108
Query: 260 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319
+ + +R+L+ G ++ TPGR+ D++ R + + I+ L LDEAD ML+ GF+ QI +
Sbjct: 109 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 168
Query: 320 QQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHES 379
+ + PP Q +L SAT P EI ++ + F+ + + + V R + + I Q V
Sbjct: 169 RYL---PPAT-QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE 224
Query: 380 D-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQ 438
+ K L DL + ++F TK+ D L + F +++HGD Q+
Sbjct: 225 EWKFDTLCDLYDTLTI-------TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 277
Query: 439 ERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 498
ERE ++ F+SG + +L++TDV ARGLD+P V+ ++N+DLPN+ + Y+HRIGR+GR G+
Sbjct: 278 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 337
Query: 499 GLATAFFNENNLSLARPLAELMQESNQEVP 528
G+A F +++ + R + + E+P
Sbjct: 338 GVAVNFVKNDDIRVLRDIEQYYSTQIDEMP 367
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 209/390 (53%), Gaps = 28/390 (7%)
Query: 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIIS 202
TF + L E+L I + KP+ +Q+ AI + GRD++A +Q+G+GKTA F ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 203 GI---MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAP 259
+ +RE ALILAPTREL+ Q+ V+ GG
Sbjct: 62 CLDIQVRETQ-------------ALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTN 108
Query: 260 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319
+ + +R+L+ G ++ TPGR+ D++ R + + I+ L LDEAD ML+ GF+ QI +
Sbjct: 109 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 168
Query: 320 QQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHES 379
+ + PP Q +L SAT P E+ ++ + F+ + + + V R + + I Q V
Sbjct: 169 RYL---PPAT-QVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE 224
Query: 380 D-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQ 438
+ K L DL + ++F TK+ D L + F +++HGD Q+
Sbjct: 225 EWKFDTLCDLYDTLTI-------TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 277
Query: 439 ERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 498
ERE ++ F+SG + +L++TDV ARGLD+P V+ ++N+DLPN+ + Y+HRIGR+GR G+
Sbjct: 278 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 337
Query: 499 GLATAFFNENNLSLARPLAELMQESNQEVP 528
G+A F +++ + R + + E+P
Sbjct: 338 GVAVNFVKNDDIRVLRDIEQYYSTQIDEMP 367
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 147/231 (63%), Gaps = 9/231 (3%)
Query: 130 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTG 189
+ G N P PV F E + + I R + +PT +Q P++++G D++ AQTG
Sbjct: 31 ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTG 90
Query: 190 SGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGV 249
SGKT ++ P I I + +++R G P+ L+LAPTREL+ Q+ A ++ +
Sbjct: 91 SGKTLSYLLPAIVHINHQPFLERGDG-----PICLVLAPTRELAQQVQQVAAEYCRACRL 145
Query: 250 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 309
K YGGAP Q+R+LERGV+I +ATPGRL+D LE + +L+ YL LDEADRMLDM
Sbjct: 146 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM 205
Query: 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVG 360
GFEPQIRKIV Q+ RQT+++SAT+PKE+++LA DFL +Y+ + +G
Sbjct: 206 GFEPQIRKIVDQIRPD----RQTLMWSATWPKEVRQLAEDFLKDYIHINIG 252
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 147/231 (63%), Gaps = 9/231 (3%)
Query: 130 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTG 189
+ G N P PV F E + + I R + +PT +Q P++++G D++ AQTG
Sbjct: 17 ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTG 76
Query: 190 SGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGV 249
SGKT ++ P I I + +++R G P+ L+LAPTREL+ Q+ A ++ +
Sbjct: 77 SGKTLSYLLPAIVHINHQPFLERGDG-----PICLVLAPTRELAQQVQQVAAEYCRACRL 131
Query: 250 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 309
K YGGAP Q+R+LERGV+I +ATPGRL+D LE + +L+ YL LDEADRMLDM
Sbjct: 132 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM 191
Query: 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVG 360
GFEPQIRKIV Q+ RQT+++SAT+PKE+++LA DFL +Y+ + +G
Sbjct: 192 GFEPQIRKIVDQIRPD----RQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/357 (35%), Positives = 181/357 (50%), Gaps = 37/357 (10%)
Query: 149 LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQ 208
+ E++ IR + T VQ IP+ + G++++ A+TGSGKTAA+ PI+ M+
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMK-- 58
Query: 209 YVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELE 268
+L++ PTREL+ Q+ + KV YGG P Q+ +
Sbjct: 59 --------------SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV- 103
Query: 269 RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG 328
R DI+VATPGRL+DL + + L + +DEAD M +MGF I+ I+ Q
Sbjct: 104 RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ----TSN 159
Query: 329 VRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDL 388
+ T LFSAT P+EI+K+ DF+ NY + + L ++VH D +
Sbjct: 160 RKITGLFSATIPEEIRKVVKDFITNY-----EEIEACIGLANVEHKFVHVKDDWRSKVQA 214
Query: 389 LHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFK 448
L GV +VFV T+ L L+ N A + GD Q R + +F+
Sbjct: 215 LRENKDKGV-------IVFVRTRNRVAKLVR-LFDN---AIELRGDLPQSVRNRNIDAFR 263
Query: 449 SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 505
G+ +L+ TDVA+RGLDIP V V+NFD P D+ Y+HRIGRTGR G+ G A F
Sbjct: 264 EGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 190/389 (48%), Gaps = 27/389 (6%)
Query: 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPII 201
NTF + L EL + I + KP+P+Q AIP+++ GRD++A A+ G+GKTAAF P +
Sbjct: 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 80
Query: 202 SGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPIN 261
+ +P+ + ALI+ PTREL+ Q + G+ +V GG +
Sbjct: 81 EKV-------KPKLNKIQ---ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLR 130
Query: 262 QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321
+ L V ILV TPGR++DL R L +DEAD+ML F + I++Q
Sbjct: 131 DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDF----KTIIEQ 186
Query: 322 MDMPPPGVRQTMLFSATFPKEIQKLASDFLAN-YVFLAVGRVGSSTDLIVQRVEYVHESD 380
+ P Q++LFSATFP +++ L Y + + + I Q +V E
Sbjct: 187 ILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL--TLKGITQYYAFVEERQ 244
Query: 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQER 440
K H ++ L +++ + + ++F + + L + G+ H QQER
Sbjct: 245 KL-HCLNTLFSKL------QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQER 297
Query: 441 ELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 500
F+ GK LV +D+ RG+DI V V+NFD P + Y+HRIGR+GR G GL
Sbjct: 298 NKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL 357
Query: 501 ATAFFNENNLSLARPLAELMQESNQEVPA 529
A N N+ L ++ QE E+ A
Sbjct: 358 AINLINWND---RFNLYKIEQELGTEIAA 383
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 197/380 (51%), Gaps = 33/380 (8%)
Query: 138 PPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFC 197
P ++ F + L EL I C + P+ VQ IP ++ G D++ A++G GKTA F
Sbjct: 3 PGHMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 62
Query: 198 FPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS-YQTGVKVVVAYG 256
+ Q ++ G +V L++ TREL+ QI E ++FS Y VKV V +G
Sbjct: 63 LATL------QQLEPVTGQVSV----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG 112
Query: 257 GAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 315
G I + L++ I+V TPGR++ L ++L+ I++ LDEAD+ML+ + +
Sbjct: 113 GLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLE---QLDM 169
Query: 316 RKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLAN--YVFLAVGRVGSSTDLIVQRV 373
R+ VQ++ P +Q M+FSAT KEI+ + F+ + +F V T L + +
Sbjct: 170 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF-----VDDETKLTLHGL 224
Query: 374 E--YVH--ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPAT 429
+ YV +++K L DLL N V ++FV++ + AL L FPA
Sbjct: 225 QQYYVKLKDNEKNRKLFDLLDVLEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAI 277
Query: 430 TIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 489
IH Q+ER + FK + ILVAT++ RG+DI V N+D+P D D Y+HR+
Sbjct: 278 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 337
Query: 490 GRTGRAGKSGLATAFFNENN 509
R GR G GLA F ++ N
Sbjct: 338 ARAGRFGTKGLAITFVSDEN 357
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 204/390 (52%), Gaps = 23/390 (5%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPI 200
V++F +++L E L I + KP+ +Q+ AI + G D++A AQ+G+GKTA F I
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98
Query: 201 ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260
+ I + + AL+LAPTREL+ QI G GG +
Sbjct: 99 LQQIELDLKATQ----------ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV 148
Query: 261 NQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319
++++L+ I+V TPGR+ D+L R +S + I+ LDEAD ML GF+ QI I
Sbjct: 149 RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIF 208
Query: 320 QQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQ-RVEYVHE 378
Q+++ Q +L SAT P ++ ++ F+ + + + V + + + I Q + E
Sbjct: 209 QKLNSNT----QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 264
Query: 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQ 438
K L DL + ++F+ T++ D L ++ F + +HGD Q+
Sbjct: 265 EWKLDTLCDLYETLTI-------TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQK 317
Query: 439 ERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 498
ER++ +R F+SG + +L+ TD+ ARG+D+ V+ V+N+DLP + ++Y+HRIGR GR G+
Sbjct: 318 ERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 377
Query: 499 GLATAFFNENNLSLARPLAELMQESNQEVP 528
G+A E + R + S +E+P
Sbjct: 378 GVAINMVTEEDKRTLRDIETFYNTSIEEMP 407
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 193/374 (51%), Gaps = 33/374 (8%)
Query: 144 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISG 203
F + L EL I C + P+ VQ IP ++ G D++ A++G GKTA F +
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 204 IMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS-YQTGVKVVVAYGGAPINQ 262
Q ++ G +V L++ TREL+ QI E ++FS Y VKV V +GG I +
Sbjct: 68 ----QQLEPVTGQVSV----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 119
Query: 263 QLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321
L++ I+V TPGR++ L ++L+ I++ LDE D+ML+ + +R+ VQ+
Sbjct: 120 DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQE 176
Query: 322 MDMPPPGVRQTMLFSATFPKEIQKLASDFLAN--YVFLAVGRVGSSTDLIVQRVE--YVH 377
+ P +Q M+FSAT KEI+ + F+ + +F V T L + ++ YV
Sbjct: 177 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF-----VDDETKLTLHGLQQYYVK 231
Query: 378 --ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDR 435
+++K L DLL N V ++FV++ + AL L FPA IH
Sbjct: 232 LKDNEKNRKLFDLLDVLEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 284
Query: 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495
Q+ER + FK + ILVAT++ RG+DI V N+D+P D D Y+HR+ R GR
Sbjct: 285 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 344
Query: 496 GKSGLATAFFNENN 509
G GLA F ++ N
Sbjct: 345 GTKGLAITFVSDEN 358
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 193/374 (51%), Gaps = 33/374 (8%)
Query: 144 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISG 203
F + L EL I C + P+ VQ IP ++ G D++ A++G GKTA F +
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 204 IMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS-YQTGVKVVVAYGGAPINQ 262
Q ++ G +V L++ TREL+ QI E ++FS Y VKV V +GG I +
Sbjct: 68 ----QQLEPVTGQVSV----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 119
Query: 263 QLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321
L++ I+V TPGR++ L ++L+ I++ LDE D+ML+ + +R+ VQ+
Sbjct: 120 DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQE 176
Query: 322 MDMPPPGVRQTMLFSATFPKEIQKLASDFLAN--YVFLAVGRVGSSTDLIVQRVE--YVH 377
+ P +Q M+FSAT KEI+ + F+ + +F V T L + ++ YV
Sbjct: 177 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF-----VDDETKLTLHGLQQYYVK 231
Query: 378 --ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDR 435
+++K L DLL N V ++FV++ + AL L FPA IH
Sbjct: 232 LKDNEKNRKLFDLLDVLEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 284
Query: 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495
Q+ER + FK + ILVAT++ RG+DI V N+D+P D D Y+HR+ R GR
Sbjct: 285 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 344
Query: 496 GKSGLATAFFNENN 509
G GLA F ++ N
Sbjct: 345 GTKGLAITFVSDEN 358
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 41/380 (10%)
Query: 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPI 200
+F E+ L EL I K+ KP+ +Q A+P+ + R+++A +Q+G+GKTAAF +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 201 ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ---IHDEAKKFSYQTGVKVVVAYGG 257
++ + P A P A+ LAP+REL+ Q + E KF+ T +V
Sbjct: 66 LTRV-------NPEDAS---PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV--PDS 113
Query: 258 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM-GFEPQIR 316
N+Q+ ++V TPG ++DL+ R + LQ I+ LDEAD MLD G Q
Sbjct: 114 FEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCI 168
Query: 317 KIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQ-RVEY 375
++ + + P Q +LFSATF +++ A + N L + + D I Q ++
Sbjct: 169 RVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224
Query: 376 VHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDR 435
+E+DK L +L GV S +++FV TKK A+ L L G + +HGD
Sbjct: 225 KNEADKFDVLTELY------GVMTIGS-SIIFVATKKTANVLYGKLKSEGHEVSILHGDL 277
Query: 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRI 489
QER+ + F+ G++ +L+ T+V ARG+DIP V+ VVN+DLP D Y+HRI
Sbjct: 278 QTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI 337
Query: 490 GRTGRAGKSGLATAFFNENN 509
GRTGR G+ G+A +F ++ N
Sbjct: 338 GRTGRFGRKGVAISFVHDKN 357
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 204/390 (52%), Gaps = 23/390 (5%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPI 200
V++F +++L E L I + KP+ +Q+ AI + G D++A AQ+G+GKTA F I
Sbjct: 13 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 72
Query: 201 ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260
+ I + + AL+LAPTREL+ QI G GG +
Sbjct: 73 LQQIELDLKATQ----------ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV 122
Query: 261 NQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319
++++L+ I+V TPGR+ D+L R +S + I+ LDEAD ML GF+ QI I
Sbjct: 123 RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIF 182
Query: 320 QQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQ-RVEYVHE 378
Q+++ Q +L SAT P ++ ++ F+ + + + V + + + I Q + E
Sbjct: 183 QKLNSNT----QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 238
Query: 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQ 438
K L DL + ++F+ T++ D L ++ F + +HGD Q+
Sbjct: 239 EWKLDTLCDLYETLTI-------TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQK 291
Query: 439 ERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 498
ER++ +R F+SG + +L+ TD+ ARG+D+ V+ V+N+DLP + ++Y+HRIGR GR G+
Sbjct: 292 ERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 351
Query: 499 GLATAFFNENNLSLARPLAELMQESNQEVP 528
G+A E + R + S +E+P
Sbjct: 352 GVAINMVTEEDKRTLRDIETFYNTSIEEMP 381
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 203/382 (53%), Gaps = 45/382 (11%)
Query: 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPI 200
+F E+ L EL I K+ KP+ +Q A+P+ + R+++A +Q+G+GKTAAF +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 201 ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ---IHDEAKKFSYQTGVKVVVAYGG 257
++ + P A P A+ LAP+REL+ Q + E KF+ T +V
Sbjct: 66 LTRV-------NPEDAS---PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV--PDS 113
Query: 258 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM-GFEPQIR 316
N+Q+ ++V TPG ++DL+ R + LQ I+ LDEAD MLD G Q
Sbjct: 114 FEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCI 168
Query: 317 KIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQ-RVEY 375
++ + + P Q +LFSATF +++ A + N L + + D I Q ++
Sbjct: 169 RVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224
Query: 376 VHESDKRSHLMDLLHAQVANGVHGKQSL--TLVFVETKKGADALEHWLYMNGFPATTIHG 433
+E+DK L +L +G ++ +++FV TKK A+ L L G + +HG
Sbjct: 225 KNEADKFDVLTEL---------YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 275
Query: 434 DRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVH 487
D QER+ + F+ G++ +L+ T+V ARG+DIP V+ VVN+DLP D Y+H
Sbjct: 276 DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
Query: 488 RIGRTGRAGKSGLATAFFNENN 509
RIGRTGR G+ G+A +F ++ N
Sbjct: 336 RIGRTGRFGRKGVAISFVHDKN 357
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 206/394 (52%), Gaps = 21/394 (5%)
Query: 136 NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195
N V F +++L E L + + +P+ +Q+ AI + G D++A AQ+G+GKT
Sbjct: 16 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 75
Query: 196 FCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAY 255
F + I + V+ P+ AL+LAPTREL+ QI ++ +KV
Sbjct: 76 FSIAALQRI--DTSVKAPQ--------ALMLAPTRELALQIQKVVMALAFHMDIKVHACI 125
Query: 256 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 315
GG + L R I+V TPGR+ D ++R R I+ LDEAD ML GF+ QI
Sbjct: 126 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQI 184
Query: 316 RKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEY 375
+I + PP Q +L SAT P ++ ++ + F+ N V + V + + + I Q
Sbjct: 185 YQI---FTLLPPTT-QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVN 240
Query: 376 VHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDR 435
V E + + + L+ ++ + ++F T++ + L L + F + I+ D
Sbjct: 241 VEEEEYKYECLTDLYDSIS------VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDL 294
Query: 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495
QQER+ ++ F+SG + IL++TD+ ARG+D+ V+ V+N+DLP + ++Y+HRIGR GR
Sbjct: 295 PQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 354
Query: 496 GKSGLATAFFNENNLSLARPLAELMQESNQEVPA 529
G+ G+A F ++ R L + +E+P+
Sbjct: 355 GRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 388
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 197/391 (50%), Gaps = 31/391 (7%)
Query: 149 LGEELNLNIRRCKYVKPTPVQRHAIP--ISVAGRDLMACAQTGSGKTAAFCFPIISGIMR 206
L +E++ I R ++ TPVQ+ I +S D++A A+TG+GKT AF PI ++
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 207 ----EQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF-SYQTGVK---VVVAYGGA 258
QY+ + A+I+APTR+L+ QI E KK G+K V GG
Sbjct: 88 TKFDSQYMVK----------AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Query: 259 PINQQLRELERGV-DILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQ-- 314
+ ++ + +I++ATPGRL+D+LE+ + + + Y LDEADR+L++GF
Sbjct: 138 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLE 197
Query: 315 -IRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRV 373
I I+ + + +T+LFSAT ++QKLA++ + L + V + +R+
Sbjct: 198 TISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERI 257
Query: 374 E---YVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWL---YMNGFP 427
+ + E S + H + ++F T K L L + P
Sbjct: 258 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 317
Query: 428 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 487
HG TQ +R ++ FK ++ ILV TDV ARG+D P+V V+ +P+++ +Y+H
Sbjct: 318 ILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
Query: 488 RIGRTGRAGKSGLATAFFNENNLSLARPLAE 518
RIGRT R+GK G + F ++ L R L +
Sbjct: 378 RIGRTARSGKEGSSVLFICKDELPFVRELED 408
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 197/391 (50%), Gaps = 31/391 (7%)
Query: 149 LGEELNLNIRRCKYVKPTPVQRHAIP--ISVAGRDLMACAQTGSGKTAAFCFPIISGIMR 206
L +E++ I R ++ TPVQ+ I +S D++A A+TG+GKT AF PI ++
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 207 ----EQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF-SYQTGVK---VVVAYGGA 258
QY+ + A+I+APTR+L+ QI E KK G+K V GG
Sbjct: 139 TKFDSQYMVK----------AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 188
Query: 259 PINQQLRELERGV-DILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQ-- 314
+ ++ + +I++ATPGRL+D+LE+ + + + Y LDEADR+L++GF
Sbjct: 189 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLE 248
Query: 315 -IRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRV 373
I I+ + + +T+LFSAT ++QKLA++ + L + V + +R+
Sbjct: 249 TISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERI 308
Query: 374 E---YVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWL---YMNGFP 427
+ + E S + H + ++F T K L L + P
Sbjct: 309 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 368
Query: 428 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 487
HG TQ +R ++ FK ++ ILV TDV ARG+D P+V V+ +P+++ +Y+H
Sbjct: 369 ILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 428
Query: 488 RIGRTGRAGKSGLATAFFNENNLSLARPLAE 518
RIGRT R+GK G + F ++ L R L +
Sbjct: 429 RIGRTARSGKEGSSVLFICKDELPFVRELED 459
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 201/394 (51%), Gaps = 21/394 (5%)
Query: 136 NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195
N V F + +L E L + + +P+ +Q+ AI + G D++A AQ+G+GKT
Sbjct: 15 NYDKVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGT 74
Query: 196 FCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAY 255
F + I + V+ P+ AL LAPTREL+ QI ++ +KV
Sbjct: 75 FSIAALQRI--DTSVKAPQ--------ALXLAPTRELALQIQKVVXALAFHXDIKVHACI 124
Query: 256 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 315
GG + L R I+V TPGR+ D ++R R I+ LDEAD L GF+ QI
Sbjct: 125 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQI 183
Query: 316 RKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEY 375
+I + PP Q +L SAT P ++ ++ + F N V + V + + + I Q
Sbjct: 184 YQI---FTLLPPTT-QVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVN 239
Query: 376 VHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDR 435
V E + + + L+ ++ + ++F T++ + L L + F + I+ D
Sbjct: 240 VEEEEYKYECLTDLYDSIS------VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDL 293
Query: 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495
QQER+ + F+SG + IL++TD+ ARG+D+ V+ V+N+DLP + ++Y+HRIGR GR
Sbjct: 294 PQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 353
Query: 496 GKSGLATAFFNENNLSLARPLAELMQESNQEVPA 529
G+ G+A F ++ R L + +E+P+
Sbjct: 354 GRKGVAINFVTNEDVGAXRELEKFYSTQIEELPS 387
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 168 bits (425), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 197/391 (50%), Gaps = 31/391 (7%)
Query: 149 LGEELNLNIRRCKYVKPTPVQRHAIP--ISVAGRDLMACAQTGSGKTAAFCFPIISGIMR 206
L +E++ I R ++ TPVQ+ I +S D++A A+TG+GKT AF PI ++
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 207 ----EQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF-SYQTGVK---VVVAYGGA 258
QY+ + A+I+APTR+L+ QI E KK G+K V GG
Sbjct: 88 TKFDSQYMVK----------AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Query: 259 PINQQLRELERGV-DILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQ-- 314
+ ++ + +I++ATPGRL+D+LE+ + + + Y LDEADR+L++GF
Sbjct: 138 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLE 197
Query: 315 -IRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRV 373
I I+ + + +T+LFSAT ++QKLA++ + L + V + +R+
Sbjct: 198 TISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERI 257
Query: 374 E---YVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWL---YMNGFP 427
+ + E S + H + ++F T K L L + P
Sbjct: 258 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 317
Query: 428 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 487
HG TQ +R ++ FK ++ ILV TDV ARG+D P+V V+ +P+++ +Y+H
Sbjct: 318 ILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
Query: 488 RIGRTGRAGKSGLATAFFNENNLSLARPLAE 518
RIGRT R+GK G + F ++ L R L +
Sbjct: 378 RIGRTARSGKEGSSVLFICKDELPFVRELED 408
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 138/230 (60%), Gaps = 12/230 (5%)
Query: 133 SGEN--VPPPVNTFAE-IDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTG 189
SGE +P P F + +L +I R +KPTP+Q A PI + G DL+ AQTG
Sbjct: 8 SGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTG 67
Query: 190 SGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGV 249
+GKT ++ P + + + R P L+L PTREL+ + E K+SY+ G+
Sbjct: 68 TGKTLSYLMPGFIHLDSQPISREQRNG----PGMLVLTPTRELALHVEAECSKYSYK-GL 122
Query: 250 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 309
K + YGG N Q+ ++ +GVDI++ATPGRL DL V+L+ I YL +DEAD+MLDM
Sbjct: 123 KSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDM 182
Query: 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359
FEPQIRKI+ +D+ P RQT++ SAT+P +++LA +L + + + V
Sbjct: 183 EFEPQIRKIL--LDVRPD--RQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 187/379 (49%), Gaps = 46/379 (12%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCF 198
V +F E+ L +L + + +P+ +Q +A+P+ +A ++L+A +Q+G+GKTAAF
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 199 PIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ---IHDEAKKFSYQTGVKVVVAY 255
++S + P YP L L+PT EL+ Q + ++ KF + +K+ A
Sbjct: 151 AMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPE--LKLAYAV 198
Query: 256 GGAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DM 309
G +LERG I++ TPG ++D + + + + I+ LDEAD M+
Sbjct: 199 RG-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 251
Query: 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLI 369
G + Q +I + + P Q +LFSATF + K A + + + + R + D I
Sbjct: 252 GHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 307
Query: 370 VQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPAT 429
Q D++ + L+ + + ++F T+K A L L G
Sbjct: 308 KQYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVA 361
Query: 430 TIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDID------ 483
+ G+ ++R + F+ GK +LV T+V ARG+D+ V+ V+NFDLP D D
Sbjct: 362 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE 421
Query: 484 DYVHRIGRTGRAGKSGLAT 502
Y+HRIGRTGR GK GLA
Sbjct: 422 TYLHRIGRTGRFGKRGLAV 440
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 187/379 (49%), Gaps = 46/379 (12%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCF 198
V +F E+ L +L + + +P+ +Q +A+P+ +A ++L+A +Q+G+GKTAAF
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 199 PIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ---IHDEAKKFSYQTGVKVVVAY 255
++S + P YP L L+PT EL+ Q + ++ KF + +K+ A
Sbjct: 84 AMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPE--LKLAYAV 131
Query: 256 GGAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DM 309
G +LERG I++ TPG ++D + + + + I+ LDEAD M+
Sbjct: 132 RG-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 184
Query: 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLI 369
G + Q +I + + P Q +LFSATF + K A + + + + R + D I
Sbjct: 185 GHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 240
Query: 370 VQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPAT 429
Q D++ + L+ + + ++F T+K A L L G
Sbjct: 241 KQYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVA 294
Query: 430 TIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDID------ 483
+ G+ ++R + F+ GK +LV T+V ARG+D+ V+ V+NFDLP D D
Sbjct: 295 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE 354
Query: 484 DYVHRIGRTGRAGKSGLAT 502
Y+HRIGRTGR GK GLA
Sbjct: 355 TYLHRIGRTGRFGKRGLAV 373
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 187/379 (49%), Gaps = 46/379 (12%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCF 198
V +F E+ L +L + + +P+ +Q +A+P+ +A ++L+A +Q+G+GKTAAF
Sbjct: 61 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120
Query: 199 PIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ---IHDEAKKFSYQTGVKVVVAY 255
++S + P YP L L+PT EL+ Q + ++ KF + +K+ A
Sbjct: 121 AMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPE--LKLAYAV 168
Query: 256 GGAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DM 309
G +LERG I++ TPG ++D + + + + I+ LDEAD M+
Sbjct: 169 RG-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 221
Query: 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLI 369
G + Q +I + + P Q +LFSATF + K A + + + + R + D I
Sbjct: 222 GHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 277
Query: 370 VQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPAT 429
Q D++ + L+ + + ++F T+K A L L G
Sbjct: 278 KQYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVA 331
Query: 430 TIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDID------ 483
+ G+ ++R + F+ GK +LV T+V ARG+D+ V+ V+NFDLP D D
Sbjct: 332 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE 391
Query: 484 DYVHRIGRTGRAGKSGLAT 502
Y+HRIGRTGR GK GLA
Sbjct: 392 TYLHRIGRTGRFGKRGLAV 410
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 187/379 (49%), Gaps = 46/379 (12%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCF 198
V +F E+ L +L + + +P+ +Q +A+P+ +A ++L+A +Q+G+GKTAAF
Sbjct: 40 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99
Query: 199 PIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ---IHDEAKKFSYQTGVKVVVAY 255
++S + P YP L L+PT EL+ Q + ++ KF + +K+ A
Sbjct: 100 AMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPE--LKLAYAV 147
Query: 256 GGAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DM 309
G +LERG I++ TPG ++D + + + + I+ LDEAD M+
Sbjct: 148 RG-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 200
Query: 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLI 369
G + Q +I + + P Q +LFSATF + K A + + + + R + D I
Sbjct: 201 GHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 256
Query: 370 VQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPAT 429
Q D++ + L+ + + ++F T+K A L L G
Sbjct: 257 KQYYVLCSSRDEKFQALCNLYGAITI------AQAMIFCHTRKTASWLAAELSKEGHQVA 310
Query: 430 TIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDID------ 483
+ G+ ++R + F+ GK +LV T+V ARG+D+ V+ V+NFDLP D D
Sbjct: 311 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE 370
Query: 484 DYVHRIGRTGRAGKSGLAT 502
Y+HRIGRTGR GK GLA
Sbjct: 371 TYLHRIGRTGRFGKRGLAV 389
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 179/358 (50%), Gaps = 47/358 (13%)
Query: 168 VQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALI 225
+Q A+P+ ++ R+++ +Q+G+GKTAAF ++S + A P A+
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV----------DASVPKPQAIC 194
Query: 226 LAPTRELSSQIHDEAKKFSYQTGVKVVVAYG-------GAPINQQLRELERGVDILVATP 278
LAP+REL+ QI D + T VK A+G GA I+ Q I++ TP
Sbjct: 195 LAPSRELARQIMDVVTEMGKYTEVKT--AFGIKDSVPKGAKIDAQ---------IVIGTP 243
Query: 279 GRLVDLLERARVSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGVRQTMLFSA 337
G ++DL++R ++ + I+ LDEAD MLD G Q +I + P Q +LFSA
Sbjct: 244 GTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL----PRNTQIVLFSA 299
Query: 338 TFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGV 397
TF + ++K A F N + + S + I Q + + +++ L+ + G
Sbjct: 300 TFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIG- 358
Query: 398 HGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 457
+++F + K A+ + + +G + G+ +R+ + SF+ G + +LV
Sbjct: 359 -----QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVT 413
Query: 458 TDVAARGLDIPHVAHVVNFDLPNDI------DDYVHRIGRTGRAGKSGLATAFFNENN 509
T+V ARG+D+ V VVN+D+P D Y+HRIGRTGR G+ G++ F ++
Sbjct: 414 TNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 128/219 (58%), Gaps = 15/219 (6%)
Query: 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPII 201
TF ++ + + L + + KPT +Q AIP+++ GRD++ A+TGSGKT AF PI+
Sbjct: 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 102
Query: 202 SGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPIN 261
+ ++ + QR AL+L PTREL+ QI ++ + GV+ V GG
Sbjct: 103 NALL--ETPQR--------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSM 152
Query: 262 QQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 320
Q L + I++ATPGRL+D LE + +L+ ++YL +DEADR+L+M FE ++ KI++
Sbjct: 153 SQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 212
Query: 321 QMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359
+ P R+T LFSAT K++QKL L N V AV
Sbjct: 213 VI----PRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 138 bits (348), Expect = 9e-33, Method: Composition-based stats.
Identities = 69/171 (40%), Positives = 106/171 (61%), Gaps = 9/171 (5%)
Query: 362 VGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWL 421
+G+++ ++Q VEYV E K +L++ L L+F E K DA+ +L
Sbjct: 23 MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--------PPPVLIFAEKKADVDAIHEYL 74
Query: 422 YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPND 481
+ G A IHG + Q+ER A+ +F+ GK +LVATDVA++GLD P + HV+N+D+P +
Sbjct: 75 LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE 134
Query: 482 IDDYVHRIGRTGRAGKSGLATAFFNEN-NLSLARPLAELMQESNQEVPAWL 531
I++YVHRIGRTG +G +G+AT F N+ + S+ L L+ E+ Q+VP L
Sbjct: 135 IENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 185
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 13/195 (6%)
Query: 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLAL 224
PTP+Q A+P+++ G+DL+ A+TG+GKT AF PI + P R P AL
Sbjct: 24 PTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA-------PSQERGRKPRAL 76
Query: 225 ILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDL 284
+L PTREL+ Q+ E + +KVV YGG +Q L RG D +VATPGR +D
Sbjct: 77 VLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDY 134
Query: 285 LERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ 344
L + + L + LDEAD ML MGFE ++ + + PP RQT+LFSAT P +
Sbjct: 135 LRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEAL---LSATPPS-RQTLLFSATLPSWAK 190
Query: 345 KLASDFLANYVFLAV 359
+LA ++ N V + V
Sbjct: 191 RLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 110/195 (56%), Gaps = 13/195 (6%)
Query: 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLAL 224
PTP++ A+P+++ G+DL+ A+TG+GKT AF PI + P R P AL
Sbjct: 24 PTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA-------PSQERGRKPRAL 76
Query: 225 ILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDL 284
+L PTREL+ Q+ E + +KVV YGG +Q L RG D +VATPGR +D
Sbjct: 77 VLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDY 134
Query: 285 LERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ 344
L + + L + LDEAD ML MGFE ++ + + PP RQT+LFSAT P +
Sbjct: 135 LRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEAL---LSATPPS-RQTLLFSATLPSWAK 190
Query: 345 KLASDFLANYVFLAV 359
+LA ++ N V + V
Sbjct: 191 RLAERYMKNPVLINV 205
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 122/212 (57%), Gaps = 17/212 (8%)
Query: 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPII 201
N F + L EL + I + KP+P+Q +IPI+++GRD++A A+ G+GK+ A+ P++
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 202 SGI-MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS-YQTGVKVVVAYGGAP 259
+ +++ +Q A+++ PTREL+ Q+ + S + G KV+ GG
Sbjct: 63 ERLDLKKDNIQ-----------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTN 111
Query: 260 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319
+ + L+ V +++ATPGR++DL+++ + ++ + LDEAD++L F +I+
Sbjct: 112 LRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF----VQIM 167
Query: 320 QQMDMPPPGVRQTMLFSATFPKEIQKLASDFL 351
+ + + P RQ +L+SATFP +QK + L
Sbjct: 168 EDIILTLPKNRQILLYSATFPLSVQKFMNSHL 199
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 133/243 (54%), Gaps = 26/243 (10%)
Query: 130 VETSGENVPPPVNTFAEID----LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMAC 185
+ G ++P P+ TF ++D + L NI + PTP+Q AIP+ + GR+L+A
Sbjct: 13 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLAS 72
Query: 186 AQTGSGKTAAFCFPIISGIMREQYVQRP--RGARTVYPLALILAPTRELSSQIHDEAKKF 243
A TGSGKT AF PI+ +++P +G R ALI++PTREL+SQIH E K
Sbjct: 73 APTGSGKTLAFSIPIL------MQLKQPANKGFR-----ALIISPTRELASQIHRELIKI 121
Query: 244 SYQTGVKVVVAYGGAPINQQLR-ELERGVDILVATPGRLVDLLER--ARVSLQMIRYLAL 300
S TG ++ + + A ++ + + DILV TP RL+ LL++ + L + +L +
Sbjct: 122 SEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181
Query: 301 DEADRMLD---MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFL 357
DE+D++ + GF Q+ I + VR+ M FSATF ++++ L N + +
Sbjct: 182 DESDKLFEDGKTGFRDQLASIF--LACTSHKVRRAM-FSATFAYDVEQWCKLNLDNVISV 238
Query: 358 AVG 360
++G
Sbjct: 239 SIG 241
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 115/192 (59%), Gaps = 11/192 (5%)
Query: 157 IRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA 216
I+ + T +Q +I + GRDL+A A+TGSGKT AF P + I++ +++ PR
Sbjct: 69 IKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNG 126
Query: 217 RTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVA 276
V LIL+PTREL+ Q K+ + GG+ + + ++L G++I+VA
Sbjct: 127 TGV----LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVA 182
Query: 277 TPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLF 335
TPGRL+D ++ + ++ L +DEADR+LD+GFE ++++I++ + P RQTMLF
Sbjct: 183 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL----PTRRQTMLF 238
Query: 336 SATFPKEIQKLA 347
SAT ++++ LA
Sbjct: 239 SATQTRKVEDLA 250
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 15/222 (6%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPI 200
V+ F +++L E L I + KP+ +Q+ AI + G D++A AQ+G+GKTA F I
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISI 88
Query: 201 ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260
+ + E + AL+LAPTREL+ QI G GG +
Sbjct: 89 LQQLEIEFKETQ----------ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNV 138
Query: 261 NQQLRELE-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319
++++L+ I+V TPGR+ D+L R +S + I+ LDEAD ML GF+ QI +I
Sbjct: 139 RNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIF 198
Query: 320 QQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGR 361
Q+++ Q +L SAT P ++ ++ F+ + + + V +
Sbjct: 199 QKLNTSI----QVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 16/221 (7%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPI 200
+ F++ L ++ ++ +Y T +Q+ I +++ G+D++ A+TGSGKT AF P+
Sbjct: 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 83
Query: 201 ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260
+ + R Q+ LI++PTREL+ Q + +K + GG +
Sbjct: 84 LEALYRLQWTSTDGLG------VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDL 137
Query: 261 NQQLRELERGVDILVATPGRLVDLLERARVSLQM--IRYLALDEADRMLDMGFEPQIRKI 318
+ + ++ILV TPGRL+ ++ VS ++ L LDEADR+LDMGF + +
Sbjct: 138 KHEAERIN-NINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMGFADTMNAV 195
Query: 319 VQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLAN--YVFL 357
++ + P RQT+LFSAT K ++ LA L N YV++
Sbjct: 196 IENL----PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 15/225 (6%)
Query: 131 ETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGS 190
+ G V + F + L EL I C + P+ VQ IP ++ G D++ A++G
Sbjct: 3 DVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM 62
Query: 191 GKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFS-YQTGV 249
GKTA F + Q ++ G +V L++ TREL+ QI E ++FS Y V
Sbjct: 63 GKTAVFVLATL------QQLEPVTGQVSV----LVMCHTRELAFQISKEYERFSKYMPNV 112
Query: 250 KVVVAYGGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 308
KV V +GG I + L++ I+V TPGR++ L ++L+ I++ LDE D+ML+
Sbjct: 113 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172
Query: 309 MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLAN 353
+ +R+ VQ++ P +Q M+FSAT KEI+ + F+ +
Sbjct: 173 ---QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 214
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 15/224 (6%)
Query: 136 NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195
N V F +++L E+L + + +P+ +Q+ AI + G D++A AQ+G+GKT
Sbjct: 15 NYQKVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 74
Query: 196 FCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAY 255
F + I + V+ P+ AL+LAPTREL+ QI ++ +KV
Sbjct: 75 FSIAALQRI--DTSVKAPQ--------ALMLAPTRELALQIQKVVMALAFHMDIKVHACI 124
Query: 256 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 315
GG + L R I+V TPGR+ D ++R R I+ LDEAD ML GF+ QI
Sbjct: 125 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQI 183
Query: 316 RKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359
+I + PP Q +L SAT P ++ ++ + F+ N V + V
Sbjct: 184 YQI---FTLLPP-TTQVVLLSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 15/226 (6%)
Query: 136 NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195
N V F +++L E L + + +P+ +Q+ AI + G D++A AQ+G+GKT
Sbjct: 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67
Query: 196 FCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAY 255
F + I + V+ P+ AL+LAPTREL+ QI ++ +KV
Sbjct: 68 FSIAALQRI--DTSVKAPQ--------ALMLAPTRELALQIQKVVMALAFHMDIKVHACI 117
Query: 256 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 315
GG + L R I+V TPGR+ D ++R R I+ LDEAD ML GF+ QI
Sbjct: 118 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQI 176
Query: 316 RKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGR 361
+I + PP Q +L SAT P ++ ++ + F+ N V + V +
Sbjct: 177 YQI---FTLLPP-TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 15/212 (7%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPI 200
V++F +++L E L I + P+ +Q+ AI + G D++A AQ+G+G TA F I
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISI 73
Query: 201 ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260
+ I + + AL+LAPTREL+ QI G GG +
Sbjct: 74 LQQIELDLXATQ----------ALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNV 123
Query: 261 NQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319
+++ L+ I+V TPGR+ D+L R +S I LDEAD ML GF QI I
Sbjct: 124 RAEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIF 183
Query: 320 QQMDMPPPGVRQTMLFSATFPKEIQKLASDFL 351
Q ++ Q +L SAT P ++ ++ F+
Sbjct: 184 QXLNSNT----QVVLLSATMPSDVLEVTXXFM 211
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
+++FV TKK A+ L L G + +HGD QER+ + F+ G++ +L+ T+V AR
Sbjct: 40 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 99
Query: 464 GLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNENN 509
G+DIP V+ VVN+DLP D Y+HRIGRTGR G+ G+A +F ++ N
Sbjct: 100 GIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 151
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
+++FV TKK A+ L L G + +HGD QER+ + F+ G++ +L+ T+V AR
Sbjct: 39 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 98
Query: 464 GLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNENN 509
G+DIP V+ VVN+DLP D Y+HRIGRTGR G+ G+A +F ++ N
Sbjct: 99 GIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 150
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
+++FV TKK A+ L L G + +HGD QER+ + F+ G++ +L+ T+V AR
Sbjct: 38 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 97
Query: 464 GLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNENN 509
G+DIP V+ VVN+DLP D Y+HRIGRTGR G+ G+A +F ++ N
Sbjct: 98 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 149
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
++VFV ++ L +WL G + G+ Q +R A++ G+ +LVATDVAAR
Sbjct: 33 SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92
Query: 464 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQE 522
G+DIP V+HV NFD+P D Y+HRIGRT RAG+ G A + ++ L + ++E
Sbjct: 93 GIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 98.6 bits (244), Expect = 9e-21, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 363 GSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLY 422
G +T I V V E +K S L D+L + + ++F TK+ + L L
Sbjct: 4 GLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSC-------IIFCRTKEHVNQLTDELD 56
Query: 423 MNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDI 482
G+P IHG Q++R + FK G+ LVATDVAARG+DI +++ V+N+DLP +
Sbjct: 57 DLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEK 116
Query: 483 DDYVHRIGRTGRAGKSGLATAF 504
+ YVHR GRTGRAG G A +F
Sbjct: 117 ESYVHRTGRTGRAGNKGKAISF 138
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 25/200 (12%)
Query: 156 NIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 215
+R + +P+PVQ AIP+ G DL+ A++G+GKT F + ++ E +
Sbjct: 38 GLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ--- 94
Query: 216 ARTVYPLALILAPTRELSSQIHDEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDIL 274
LILAPTRE++ QIH + G++ V GG P++Q L++ I
Sbjct: 95 -------ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIA 146
Query: 275 VATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTM 333
V +PGR+ L+E ++ IR LDEAD++L+ G F+ QI I + P +Q +
Sbjct: 147 VGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSL----PASKQML 202
Query: 334 LFSATFPKEIQKLASDFLAN 353
SAT+P +FLAN
Sbjct: 203 AVSATYP--------EFLAN 214
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
Query: 157 IRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA 216
I+ ++ KPT +Q IP ++ G + +QTG+GKT A+ PI I +P A
Sbjct: 19 IKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKI-------KPERA 71
Query: 217 RTVYPLALILAPTRELSSQIHDEAKKFS-YQTGVKVVVA---YGGAPINQQLRELERGVD 272
A+I APTREL++QI+ E K + + + +VA GG + L +L
Sbjct: 72 EV---QAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPH 128
Query: 273 ILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQT 332
I++ TPGR+ D + + + L +DEAD LD GF + +I + P Q
Sbjct: 129 IVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARX----PKDLQX 184
Query: 333 MLFSATFPKEIQKLASDFLANYVFLAV 359
++FSAT P++++ + N F+ V
Sbjct: 185 LVFSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 27/218 (12%)
Query: 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFP 199
+F E+ L EL I K+ KP+ +Q A+P+ + R+++A +Q+G+GKTAAF
Sbjct: 22 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 81
Query: 200 IISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ---IHDEAKKFSYQTGVKVVVAYG 256
+++ + P A P A+ LAP+REL+ Q + E KF+ T +V
Sbjct: 82 MLTRV-------NPEDAS---PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV--PD 129
Query: 257 GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQI 315
N+Q+ ++V TPG ++DL+ R + LQ I+ LDEAD MLD G Q
Sbjct: 130 SFEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQC 184
Query: 316 RKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLAN 353
++ + + P Q +LFSATF +++ A + N
Sbjct: 185 IRVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPN 218
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 376 VHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDR 435
+ +++K L DLL N V ++FV++ + AL L FPA IH
Sbjct: 13 LKDNEKNRKLFDLLDVLEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495
Q+ER + FK + ILVAT++ RG+DI V N+D+P D D Y+HR+ R GR
Sbjct: 66 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 125
Query: 496 GKSGLATAFFNENN 509
G GLA F ++ N
Sbjct: 126 GTKGLAITFVSDEN 139
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 405 LVFVETKKGADALEHWL---YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVA 461
++F T K L L + P HG TQ +R ++ FK ++ ILV TDV
Sbjct: 37 IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG 96
Query: 462 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAE 518
ARG+D P+V V+ +P+++ +Y+HRIGRT R+GK G + F ++ L R L +
Sbjct: 97 ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 153
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 405 LVFVETKKGADALEHWL---YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVA 461
++F T K L L + P HG TQ +R ++ FK ++ ILV TDV
Sbjct: 37 IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG 96
Query: 462 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAE 518
ARG+D P+V V+ +P+++ +Y+HRIGRT R+GK G + F ++ L R L +
Sbjct: 97 ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 153
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 405 LVFVETKKGADALEHWL---YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVA 461
++F T K L L + P HG TQ +R ++ FK ++ ILV TDV
Sbjct: 37 IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG 96
Query: 462 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAE 518
ARG+D P+V V+ +P+++ +Y+HRIGRT R+GK G + F ++ L R L +
Sbjct: 97 ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 153
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 405 LVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARG 464
++F +T++ A L + +G + + G+ T ++R ++ F+ GK +L+ T+V ARG
Sbjct: 38 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 97
Query: 465 LDIPHVAHVVNFDLP------NDIDDYVHRIGRTGRAGKSGLA 501
+D+ V VVNFDLP D + Y+HRIGRTGR GK GLA
Sbjct: 98 IDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA 140
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
+VF TK + + L G PA +HGD +Q ERE L +F+ G+ +LVATDVAAR
Sbjct: 34 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAAR 93
Query: 464 GLDIPHVAHVVNFDLPNDIDDYVH 487
GLDIP V VV++ LP+ + Y H
Sbjct: 94 GLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 52/84 (61%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
+VF TK + + L G PA +HGD +Q ERE + +F+ G+ +LVATDVAAR
Sbjct: 31 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAAR 90
Query: 464 GLDIPHVAHVVNFDLPNDIDDYVH 487
GLDIP V VV++ +P+ + Y H
Sbjct: 91 GLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 77/125 (61%)
Query: 405 LVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARG 464
++F T++ + L L + F + I+ D QQER+ ++ F+SG + IL++TD+ ARG
Sbjct: 34 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93
Query: 465 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESN 524
+D+ V+ V+N+DLP + ++Y+HRIGR GR G+ G+A F ++ R L +
Sbjct: 94 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI 153
Query: 525 QEVPA 529
+E+P+
Sbjct: 154 EELPS 158
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 34/218 (15%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCF 198
V +F E+ L +L + + +P+ +Q +A+P+ +A ++L+A +Q+G+GKTAAF
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 199 PIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ---IHDEAKKFSYQTGVKVVVAY 255
++S + P YP L L+PT EL+ Q + ++ KF + +K+ A
Sbjct: 151 AMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPE--LKLAYAV 198
Query: 256 GGAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DM 309
G +LERG I++ TPG ++D + + + + I+ LDEAD M+
Sbjct: 199 RG-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 251
Query: 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLA 347
G + Q +I + + P Q +LFSATF + K A
Sbjct: 252 GHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFA 285
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 34/218 (15%)
Query: 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCF 198
V +F E+ L +L + + +P+ +Q +A+P+ +A ++L+A +Q+G+GKTAAF
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 199 PIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ---IHDEAKKFSYQTGVKVVVAY 255
++S + P YP L L+PT EL+ Q + ++ KF + +K+ A
Sbjct: 84 AMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPE--LKLAYAV 131
Query: 256 GGAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DM 309
G +LERG I++ TPG ++D + + + + I+ LDEAD M+
Sbjct: 132 RG-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 184
Query: 310 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLA 347
G + Q +I + + P Q +LFSATF + K A
Sbjct: 185 GHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFA 218
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 7/172 (4%)
Query: 369 IVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPA 428
+ Q YV E K H ++ L +++ + + +++F + + + L + G+
Sbjct: 19 VTQYYAYVTERQK-VHCLNTLFSRL------QINQSIIFCNSSQRVELLAKKISQLGYSC 71
Query: 429 TTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 488
IH Q+ R F++G LV TD+ RG+DI V V+NFD P + Y+HR
Sbjct: 72 FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHR 131
Query: 489 IGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 540
IGR+GR G GLA ++ + + E + + +P+ + + A Y
Sbjct: 132 IGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEY 183
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Query: 361 RVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHW 420
R+ + L+VQ E + K L +++ Q+ + K +VF ++ A + +
Sbjct: 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSK---IIVFTNYRETAKKIVNE 380
Query: 421 LYMNGFPATTIHG------DR--TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAH 472
L +G A G DR +Q+E++L L F G+ +LVAT V GLD+P V
Sbjct: 381 LVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDL 440
Query: 473 VVNFD-LPNDIDDYVHRIGRTGR 494
VV ++ +P+ I + R GRTGR
Sbjct: 441 VVFYEPVPSAIRS-IQRRGRTGR 462
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 188 TGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQT 247
TG GKT + +M +Y G + L+LAPT+ L Q H E+ + +
Sbjct: 32 TGLGKT-------LIAMMIAEYRLTKYGGKV-----LMLAPTKPLVLQ-HAESFRRLFNL 78
Query: 248 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 305
+ +VA G ++ + ++VATP + + L R+SL+ + + DEA R
Sbjct: 79 PPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Query: 405 LVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARG 464
+++ ++ + L G A H R F+ I+VAT G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299
Query: 465 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLS-LARPLAELMQES 523
++ P+V VV+FD+P +I+ Y GR GR G A F++ +++ L R L E Q
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQ 359
Query: 524 NQEV 527
Q++
Sbjct: 360 LQDI 363
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 405 LVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARG 464
+++ ++ + L G A H R F+ I+VAT G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXG 299
Query: 465 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLS-LARPLAELMQES 523
++ P+V VV+FD+P +I+ Y GR GR G A F++ + + L R L E Q
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPADXAWLRRCLEEKPQGQ 359
Query: 524 NQEV 527
Q++
Sbjct: 360 LQDI 363
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 405 LVFVETKKGADALEHWLYMN------GFPATTIHGD--------RTQQERELALRSFKSG 450
++F +T++ A AL W+ N G A + G TQ E++ + F++G
Sbjct: 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG 463
Query: 451 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 498
K +L+AT VA GLDI V+ + L + V GR RA +S
Sbjct: 464 KINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR-ARADES 510
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 447 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 506
Query: 464 GLDIPHVAHVVNFD 477
GLDIP V+ V D
Sbjct: 507 GLDIPEVSLVAILD 520
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 464 GLDIPHVAHVVNFD 477
GLDIP V+ V D
Sbjct: 508 GLDIPEVSLVAILD 521
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 464 GLDIPHVAHVVNFD 477
GLDIP V+ V D
Sbjct: 508 GLDIPEVSLVAILD 521
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 464 GLDIPHVAHVVNFD 477
GLDIP V+ V D
Sbjct: 508 GLDIPEVSLVAILD 521
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 473 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 532
Query: 464 GLDIPHVAHVVNFD 477
GLDIP V+ V D
Sbjct: 533 GLDIPEVSLVAILD 546
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Query: 383 SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 442
+ ++DL+ G++ TLV V T + A+ L +L +G A +H + +R+
Sbjct: 424 NQILDLMEGIRERAARGER--TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQA 481
Query: 443 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR----IGRTGRAGKS 498
+R + G LV ++ GLDIP V+ V D D + ++ I GRA ++
Sbjct: 482 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARN 539
Query: 499 GLATAFFNENNLSLARPLAELMQESNQ 525
+ + +S A + ++E+N+
Sbjct: 540 ARGEVWLYADRVSEA--MQRAIEETNR 564
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Query: 383 SHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 442
+ ++DL+ G++ TLV V T + A+ L +L +G A +H + +R+
Sbjct: 423 NQILDLMEGIRERAARGER--TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQA 480
Query: 443 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR----IGRTGRAGKS 498
+R + G LV ++ GLDIP V+ V D D + ++ I GRA ++
Sbjct: 481 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARN 538
Query: 499 GLATAFFNENNLSLARPLAELMQESNQ 525
+ + +S A + ++E+N+
Sbjct: 539 ARGEVWLYADRVSEA--MQRAIEETNR 563
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 401 QSLTLVFVETKKGADALEHWL------------YMNGFPATTIHGDRTQQERELALRSFK 448
+++T++FV+T+ DAL++W+ + G T + T ++ L +FK
Sbjct: 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457
Query: 449 -SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR-TGRAGKSGLATA 503
SG IL+AT VA G+DI V+ ++ ++ + GR R K L T+
Sbjct: 458 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 514
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 172 AIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGARTVYPLALILAPTR 230
A+P ++ G++ + CA TG GKT +S ++ E ++++ P+G + P
Sbjct: 22 ALP-AMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 74
Query: 231 ELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 290
E + + K+ + G +V G N + ++ DI++ TP LV+ L++ +
Sbjct: 75 EQNKSVFS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 131
Query: 291 -SLQMIRYLALDEA 303
SL + + DE
Sbjct: 132 PSLSIFTLMIFDEC 145
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 401 QSLTLVFVETKKGADALEHWL------------YMNGFPATTIHGDRTQQERELALRSFK 448
+++T++FV+T+ DAL++W+ + G T + T ++ L +FK
Sbjct: 389 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 448
Query: 449 -SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR-TGRAGKSGLATA 503
SG IL+AT VA G+DI V+ ++ ++ + GR R K L T+
Sbjct: 449 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 505
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 172 AIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGARTVYPLALILAPTR 230
A+P ++ G++ + CA TG GKT +S ++ E ++++ P+G + P
Sbjct: 13 ALP-AMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 65
Query: 231 ELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 290
E + + K+ + G +V G N + ++ DI++ TP LV+ L++ +
Sbjct: 66 EQNKSVFS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 122
Query: 291 -SLQMIRYLALDEA 303
SL + + DE
Sbjct: 123 PSLSIFTLMIFDEC 136
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 401 QSLTLVFVETKKGADALEHWL------------YMNGFPATTIHGDRTQQERELALRSFK 448
+++T++FV+T+ DAL++W+ + G T + T ++ L +FK
Sbjct: 397 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 456
Query: 449 -SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR-TGRAGKSGLATA 503
SG IL+AT VA G+DI V+ ++ ++ + GR R K L T+
Sbjct: 457 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 513
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 172 AIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGARTVYPLALILAPTR 230
A+P ++ G++ + CA TG GKT +S ++ E ++++ P+G + P
Sbjct: 21 ALP-AMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 73
Query: 231 ELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 290
E + K+ + G +V G N + ++ DI++ TP LV+ L++ +
Sbjct: 74 EQQKSVFS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 130
Query: 291 -SLQMIRYLALDEA 303
SL + + DE
Sbjct: 131 PSLSIFTLMIFDEC 144
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 405 LVFVETKKGADALEHWLYMN------GFPATTIHGD--------RTQQERELALRSFKSG 450
++F +T++ A AL W+ N G A + G TQ E+ + F++G
Sbjct: 154 IIFTKTRQSAYALSQWITDNKKFAEVGVKAHHLIGAGHSSEFKPXTQNEQREVISKFRTG 213
Query: 451 KTPILVATDVAARGLDIPHVAHVVNFDL 478
K +L+AT VA GLDI V+ + L
Sbjct: 214 KINLLIATTVAEEGLDIKECNIVIRYGL 241
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 401 QSLTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQER---------ELALRSFK 448
++ T++FV+T+ DAL+ W+ N F I R + R + L +F+
Sbjct: 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGXTLPAQKCVLEAFR 448
Query: 449 -SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 498
SG IL+AT VA G+DI V+ ++ ++ + GR GRA S
Sbjct: 449 ASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGR-GRARDS 498
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
LV TKK ++ L +L G +H + ER +R + GK +LV ++
Sbjct: 454 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 513
Query: 464 GLDIPHVAHVVNFD 477
GLDIP V+ V D
Sbjct: 514 GLDIPEVSLVAILD 527
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
LV TKK ++ L +L G +H + ER +R + GK +LV ++
Sbjct: 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 464 GLDIPHVAHVVNFD 477
GLDIP V+ V D
Sbjct: 508 GLDIPEVSLVAILD 521
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 416 ALEHWLYMNG-----FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 470
A+E + Y++ F +HG +Q+E++ + F G+ ILV+T V G+D+P
Sbjct: 599 AVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPR- 657
Query: 471 AHVVNFDLPNDID-DYVHRI-GRTGRAGKSG 499
A+V+ + P +H++ GR GR G+
Sbjct: 658 ANVMVIENPERFGLAQLHQLRGRVGRGGQEA 688
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 392 QVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK 451
++ NG + QS +++ ++K ++ + L G A H + +++ R + + +
Sbjct: 259 KLINGRYKGQS-GIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANE 317
Query: 452 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR 494
++VAT G+D P V V++ + +++Y GR GR
Sbjct: 318 IQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGR 360
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 406 VFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKT--PILVATDV 460
V V K A AL+ + G A H + ER+ A F T +L+ +++
Sbjct: 506 VLVICAKAATALQLEQVLREREGIRAAVFHEGXSIIERDRAAAWFAEEDTGAQVLLCSEI 565
Query: 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 498
+ G + +H V FDLP + D RIGR R G++
Sbjct: 566 GSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQA 603
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 15/145 (10%)
Query: 401 QSLTLVFVETKKGADALEHWLYMNGF-----PATTIHGDRTQQERELALRS-------FK 448
Q+ TL+F +T+ AL+ + N P + R Q + L S FK
Sbjct: 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690
Query: 449 SGK-TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 507
+ K +L+AT VA G+DI VV ++ ++ + GR AG + E
Sbjct: 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTE 750
Query: 508 --NNLSLARPLAELMQESNQEVPAW 530
N R E+M ++ +++ W
Sbjct: 751 VVENEKCNRYKEEMMNKAVEKIQKW 775
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGARTVYPLALILAPTRELSS 234
++ G++ + CA TGSGKT +S ++ E + Q P G + P E
Sbjct: 260 AINGKNALICAPTGSGKT------FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 313
Query: 235 QI---HDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV- 290
+ H E + +S Q G+ G N + ++ DI+V TP LV+ E +
Sbjct: 314 NVFKHHFERQGYSVQ-GIS-----GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 291 SLQMIRYLALDEA 303
SL + + DE
Sbjct: 368 SLSIFTLMIFDEC 380
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 15/145 (10%)
Query: 401 QSLTLVFVETKKGADALEHWLYMNGF-----PATTIHGDRTQQERELALRS-------FK 448
Q+ TL+F +T+ AL+ + N P + R Q + L S FK
Sbjct: 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690
Query: 449 SGK-TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 507
+ K +L+AT VA G+DI VV ++ ++ + GR AG + E
Sbjct: 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTE 750
Query: 508 --NNLSLARPLAELMQESNQEVPAW 530
N R E+M ++ +++ W
Sbjct: 751 VVENEKCNRYKEEMMNKAVEKIQKW 775
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGARTVYPLALILAPTRELSS 234
++ G++ + CA TGSGKT +S ++ E + Q P G + P E
Sbjct: 260 AINGKNALICAPTGSGKT------FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 313
Query: 235 QI---HDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV- 290
+ H E + +S Q G+ G N + ++ DI+V TP LV+ E +
Sbjct: 314 NVFKHHFERQGYSVQ-GIS-----GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 291 SLQMIRYLALDEA 303
SL + + DE
Sbjct: 368 SLSIFTLMIFDEC 380
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 15/145 (10%)
Query: 401 QSLTLVFVETKKGADALEHWLYMNGF-----PATTIHGDRTQQERELALRS-------FK 448
Q+ TL+F +T+ AL+ + N P + R Q + L S FK
Sbjct: 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449
Query: 449 SGK-TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 507
+ K +L+AT VA G+DI VV ++ ++ + GR AG + E
Sbjct: 450 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTE 509
Query: 508 --NNLSLARPLAELMQESNQEVPAW 530
N R E+M ++ +++ W
Sbjct: 510 VVENEKCNRYKEEMMNKAVEKIQKW 534
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGARTVYPLALILAPTRELSS 234
++ G++ + CA TGSGKT +S ++ E + Q P G + P E
Sbjct: 19 AINGKNALICAPTGSGKT------FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 72
Query: 235 QI---HDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV- 290
+ H E + +S Q G+ G N + ++ DI+V TP LV+ E +
Sbjct: 73 NVFKHHFERQGYSVQ-GIS-----GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 126
Query: 291 SLQMIRYLALDEA 303
SL + + DE
Sbjct: 127 SLSIFTLMIFDEC 139
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALI-LAPTRELSSQIHDE 239
+L+ CA TG+GKT ++ I + + G V +I +AP R L ++
Sbjct: 97 NLLLCAPTGAGKTNVALMCMLREIGKHINMD---GTINVDDFKIIYIAPMRSLVQEMVGS 153
Query: 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVSLQMIR 296
K G+ V G +Q +E I+V TP + D++ R R Q++R
Sbjct: 154 FGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVR 209
Query: 297 YLALDEADRMLDMG---FEPQIRKIVQQMDMPPPGVRQTMLFSATFP 340
+ LDE + D E + + ++ ++M VR L SAT P
Sbjct: 210 LIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL-SATLP 255
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALI-LAPTRELSSQIHDE 239
+L+ CA TG+GKT ++ I + + G V +I +AP R L ++
Sbjct: 97 NLLLCAPTGAGKTNVALMCMLREIGKHINMD---GTINVDDFKIIYIAPMRSLVQEMVGS 153
Query: 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVSLQMIR 296
K G+ V G +Q +E I+V TP + D++ R R Q++R
Sbjct: 154 FGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVR 209
Query: 297 YLALDEADRMLDMG---FEPQIRKIVQQMDMPPPGVRQTMLFSATFP 340
+ LDE + D E + + ++ ++M VR L SAT P
Sbjct: 210 LIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL-SATLP 255
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495
+++ERE L F++G+ +V++ V G+D+P V +Y+ R+GR R
Sbjct: 379 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 438
Query: 496 GK 497
K
Sbjct: 439 SK 440
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 436 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495
+++ERE L F++G+ +V++ V G+D+P V +Y+ R+GR R
Sbjct: 144 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 203
Query: 496 GK 497
K
Sbjct: 204 SK 205
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 17/153 (11%)
Query: 157 IRRCKYVKPTPVQRHAIPISV-AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 215
I++ K P Q A+ + G L+ + TGSGKT IIS +++ G
Sbjct: 23 IKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------NG 75
Query: 216 ARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILV 275
+ +Y + P R L+++ + K + G KV + G + + DI++
Sbjct: 76 GKAIY-----VTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAWL---KNYDIII 126
Query: 276 ATPGRLVDLLERARVSLQMIRYLALDEADRMLD 308
T +L L L + Y LDE + D
Sbjct: 127 TTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND 159
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 135 ENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQR------HAIPISVAGRDLMACAQT 188
++V P+N IDL EL NI C + +PT AI +++ + T
Sbjct: 166 DDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK-KCQDNNVLIVSPT 224
Query: 189 GSGKTAAFCFPII 201
G+ ++C P +
Sbjct: 225 GNNSNESWCLPAV 237
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 135 ENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQR------HAIPISVAGRDLMACAQT 188
++V P+N IDL EL NI C + +PT AI +++ + T
Sbjct: 166 DDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK-KCQDNNVLIVSPT 224
Query: 189 GSGKTAAFCFPII 201
G+ ++C P +
Sbjct: 225 GNNSNESWCLPAV 237
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 126 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQR------HAIPISVAG 179
+D + + ++V P+N IDL EL NI C + +PT AI
Sbjct: 139 QDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK-KCQD 197
Query: 180 RDLMACAQTGSGKTAAFCFPII 201
+++ + TG+ ++C P +
Sbjct: 198 NNVLIVSPTGNNSNESWCLPAV 219
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
LV + + ++ L L G P ++ ++E E+ ++ + G I AT++A R
Sbjct: 477 VLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTI--ATNMAGR 534
Query: 464 GLDI---PHVAHVVNFDLPNDIDDYVHRI-----GRTGRAGKSGLATAFFN 506
G DI P VA + + RI GR GR G G + F +
Sbjct: 535 GTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLS 585
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 463
LV + + ++ L L G P ++ ++E E+ ++ + G I AT++A R
Sbjct: 477 VLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTI--ATNMAGR 534
Query: 464 GLDI---PHVAHVVNFDLPNDIDDYVHRI-----GRTGRAGKSGLATAFFN 506
G DI P VA + + RI GR GR G G + F +
Sbjct: 535 GTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLS 585
>pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 299
A + Q +KV+ P + L++G D+ VA P R V L E+A + +
Sbjct: 17 ADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPER-VKLFEKAGIEVAGTVDDM 75
Query: 300 LDEADRMLD 308
LDEAD ++D
Sbjct: 76 LDEADIVID 84
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 432 HGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVV-----NFDLPNDIDDYV 486
HG ++E E + F + +LV T + G+DIP ++ +F L +
Sbjct: 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ-----L 899
Query: 487 HRI-GRTGRAGKSGLA 501
H++ GR GR+ A
Sbjct: 900 HQLRGRVGRSHHQAYA 915
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,001,823
Number of Sequences: 62578
Number of extensions: 645398
Number of successful extensions: 1679
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1383
Number of HSP's gapped (non-prelim): 135
length of query: 606
length of database: 14,973,337
effective HSP length: 104
effective length of query: 502
effective length of database: 8,465,225
effective search space: 4249542950
effective search space used: 4249542950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)