Query 007368
Match_columns 606
No_of_seqs 500 out of 3278
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 00:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 4.9E-72 1.7E-76 602.5 45.5 409 111-534 25-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.1E-64 1E-68 539.1 45.4 405 130-540 3-415 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 4.9E-60 1.7E-64 505.6 40.4 372 138-530 33-405 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.6E-58 5.3E-63 494.2 33.4 377 137-534 35-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 3.3E-57 1.1E-61 482.0 36.9 372 140-533 19-390 (400)
6 3i5x_A ATP-dependent RNA helic 100.0 6.4E-57 2.2E-61 501.4 40.0 366 148-521 78-462 (563)
7 1xti_A Probable ATP-dependent 100.0 1.4E-55 4.9E-60 467.7 37.7 369 142-531 8-381 (391)
8 3sqw_A ATP-dependent RNA helic 100.0 2.1E-55 7.3E-60 490.2 40.3 365 148-520 27-410 (579)
9 1fuu_A Yeast initiation factor 100.0 5.1E-57 1.8E-61 479.1 22.6 375 138-534 17-392 (394)
10 3fht_A ATP-dependent RNA helic 100.0 1E-54 3.5E-59 464.2 39.9 367 139-529 22-401 (412)
11 1hv8_A Putative ATP-dependent 100.0 1.5E-54 5.2E-59 455.2 40.4 358 142-527 6-364 (367)
12 3pey_A ATP-dependent RNA helic 100.0 2.5E-54 8.7E-59 458.1 36.9 357 140-521 3-370 (395)
13 3fmp_B ATP-dependent RNA helic 100.0 7.2E-56 2.5E-60 483.2 21.1 365 140-528 90-467 (479)
14 2z0m_A 337AA long hypothetical 100.0 7.2E-52 2.4E-56 429.8 35.9 335 149-521 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 4.8E-50 1.7E-54 444.3 37.5 343 145-517 24-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 8.2E-52 2.8E-56 453.5 19.0 369 138-531 115-494 (508)
17 3oiy_A Reverse gyrase helicase 100.0 4.6E-50 1.6E-54 429.2 28.7 330 153-521 10-376 (414)
18 1oyw_A RECQ helicase, ATP-depe 100.0 2.3E-49 7.9E-54 434.4 34.9 343 142-518 2-353 (523)
19 1tf5_A Preprotein translocase 100.0 4.7E-48 1.6E-52 428.9 28.5 327 159-510 79-547 (844)
20 4a2p_A RIG-I, retinoic acid in 100.0 2.4E-47 8.1E-52 423.3 28.8 336 162-511 5-511 (556)
21 3tbk_A RIG-I helicase domain; 100.0 6.5E-47 2.2E-51 419.4 28.5 340 163-516 3-515 (555)
22 2ykg_A Probable ATP-dependent 100.0 9.7E-48 3.3E-52 438.2 21.9 361 155-528 4-540 (696)
23 3l9o_A ATP-dependent RNA helic 100.0 1.8E-46 6.3E-51 440.7 26.8 333 142-508 162-597 (1108)
24 4a2q_A RIG-I, retinoic acid in 100.0 1E-45 3.4E-50 426.4 30.5 339 159-511 243-752 (797)
25 2va8_A SSO2462, SKI2-type heli 100.0 6E-45 2.1E-49 415.9 35.2 340 142-509 8-409 (715)
26 2zj8_A DNA helicase, putative 100.0 1.1E-45 3.9E-50 421.8 29.0 336 143-509 2-388 (720)
27 2fsf_A Preprotein translocase 100.0 9.9E-46 3.4E-50 409.1 27.1 323 164-510 74-585 (853)
28 4ddu_A Reverse gyrase; topoiso 100.0 3E-45 1E-49 430.2 29.3 323 159-521 74-503 (1104)
29 1nkt_A Preprotein translocase 100.0 6.7E-45 2.3E-49 402.6 28.2 328 159-511 107-620 (922)
30 2p6r_A Afuhel308 helicase; pro 100.0 2E-45 6.7E-50 418.7 23.1 338 143-509 2-389 (702)
31 4a2w_A RIG-I, retinoic acid in 100.0 1.2E-44 3.9E-49 422.2 27.5 338 159-510 243-751 (936)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 2.8E-45 9.4E-50 430.8 20.5 325 158-522 52-468 (1054)
33 1wp9_A ATP-dependent RNA helic 100.0 3.1E-43 1.1E-47 382.3 33.7 326 164-511 9-478 (494)
34 2xgj_A ATP-dependent RNA helic 100.0 7.1E-43 2.4E-47 406.9 37.8 314 160-508 83-499 (1010)
35 4gl2_A Interferon-induced heli 100.0 3.3E-44 1.1E-48 409.3 22.2 333 163-508 6-518 (699)
36 2whx_A Serine protease/ntpase/ 100.0 4.4E-44 1.5E-48 397.9 9.5 324 147-529 155-502 (618)
37 4a4z_A Antiviral helicase SKI2 100.0 1.2E-41 4.2E-46 396.5 30.2 306 164-506 39-490 (997)
38 1gm5_A RECG; helicase, replica 100.0 2.6E-42 9E-47 390.3 22.3 334 151-523 356-711 (780)
39 2jlq_A Serine protease subunit 100.0 2.2E-42 7.5E-47 372.8 17.1 312 161-531 1-337 (451)
40 2eyq_A TRCF, transcription-rep 100.0 7.8E-40 2.7E-44 386.7 36.1 323 148-509 587-923 (1151)
41 4f92_B U5 small nuclear ribonu 100.0 4.6E-40 1.6E-44 399.1 31.8 350 149-516 911-1316(1724)
42 2oca_A DAR protein, ATP-depend 100.0 2.9E-41 9.9E-46 370.8 18.8 313 163-506 112-453 (510)
43 1yks_A Genome polyprotein [con 100.0 5.6E-42 1.9E-46 368.1 7.6 289 175-529 4-323 (440)
44 3o8b_A HCV NS3 protease/helica 100.0 5.3E-41 1.8E-45 369.9 14.6 279 164-512 217-518 (666)
45 2xau_A PRE-mRNA-splicing facto 100.0 1.3E-39 4.4E-44 370.7 26.0 339 139-510 69-445 (773)
46 2wv9_A Flavivirin protease NS2 100.0 9.5E-41 3.3E-45 373.3 15.9 307 164-528 215-556 (673)
47 4f92_B U5 small nuclear ribonu 100.0 5.6E-39 1.9E-43 389.6 31.6 344 161-516 76-481 (1724)
48 1wrb_A DJVLGB; RNA helicase, D 100.0 3E-39 1E-43 321.8 21.7 250 122-372 1-252 (253)
49 3fe2_A Probable ATP-dependent 100.0 2.4E-38 8.3E-43 313.2 25.8 225 129-362 16-240 (242)
50 2z83_A Helicase/nucleoside tri 100.0 8.2E-40 2.8E-44 353.3 13.0 278 168-508 10-313 (459)
51 2fwr_A DNA repair protein RAD2 100.0 8.4E-40 2.9E-44 355.7 12.4 293 163-508 92-454 (472)
52 2v6i_A RNA helicase; membrane, 100.0 4.8E-37 1.6E-41 329.1 22.9 270 178-505 1-288 (431)
53 3iuy_A Probable ATP-dependent 100.0 1.5E-36 5.3E-41 297.4 22.4 218 133-359 10-228 (228)
54 3h1t_A Type I site-specific re 100.0 3.7E-37 1.3E-41 344.0 19.8 309 164-497 178-545 (590)
55 3fmo_B ATP-dependent RNA helic 100.0 1.1E-35 3.8E-40 303.1 22.5 204 140-360 90-298 (300)
56 3ber_A Probable ATP-dependent 100.0 3.3E-35 1.1E-39 291.7 24.8 206 140-359 41-247 (249)
57 3bor_A Human initiation factor 100.0 1.1E-35 3.6E-40 293.2 21.0 211 136-360 24-235 (237)
58 2oxc_A Probable ATP-dependent 100.0 2.5E-35 8.6E-40 289.2 22.9 212 133-359 15-228 (230)
59 1z63_A Helicase of the SNF2/RA 100.0 5.6E-35 1.9E-39 320.0 27.7 310 164-508 37-453 (500)
60 1vec_A ATP-dependent RNA helic 100.0 1.1E-34 3.7E-39 279.5 24.6 202 142-357 3-205 (206)
61 3rc3_A ATP-dependent RNA helic 100.0 4.3E-35 1.5E-39 326.6 23.9 282 168-507 144-444 (677)
62 1q0u_A Bstdead; DEAD protein, 100.0 2.3E-35 7.7E-40 287.2 18.8 206 141-360 3-212 (219)
63 2pl3_A Probable ATP-dependent 100.0 1.5E-34 5.1E-39 284.8 24.6 211 139-360 22-233 (236)
64 1qde_A EIF4A, translation init 100.0 1.2E-34 4.1E-39 283.0 22.5 211 136-361 8-218 (224)
65 3ly5_A ATP-dependent RNA helic 100.0 1.4E-34 4.8E-39 289.4 23.4 203 142-354 52-257 (262)
66 3dmq_A RNA polymerase-associat 100.0 2.2E-35 7.7E-40 344.4 20.2 319 163-507 152-612 (968)
67 2gxq_A Heat resistant RNA depe 100.0 2.3E-34 8E-39 277.2 23.6 204 143-359 2-205 (207)
68 3dkp_A Probable ATP-dependent 100.0 4.1E-35 1.4E-39 290.5 18.0 222 129-362 12-243 (245)
69 3jux_A Protein translocase sub 100.0 8.3E-33 2.9E-37 299.8 36.7 323 164-511 75-590 (822)
70 1t6n_A Probable ATP-dependent 100.0 5.3E-34 1.8E-38 277.7 21.5 206 139-358 11-219 (220)
71 3mwy_W Chromo domain-containin 100.0 5.7E-32 1.9E-36 311.1 33.8 319 163-508 235-684 (800)
72 1z3i_X Similar to RAD54-like; 100.0 2.8E-31 9.7E-36 298.0 37.7 323 164-508 55-528 (644)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.1E-32 1.4E-36 314.6 28.9 329 151-506 251-707 (1038)
74 2p6n_A ATP-dependent RNA helic 100.0 7.4E-31 2.5E-35 249.1 15.5 180 348-535 9-189 (191)
75 2ipc_A Preprotein translocase 100.0 1.5E-28 5E-33 271.3 34.9 324 159-510 75-700 (997)
76 1c4o_A DNA nucleotide excision 100.0 1.1E-28 3.7E-33 276.9 29.8 177 329-519 380-561 (664)
77 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.8E-29 6.1E-34 238.5 18.1 169 363-537 14-182 (185)
78 2d7d_A Uvrabc system protein B 100.0 5E-28 1.7E-32 271.4 28.0 178 328-519 385-567 (661)
79 2hjv_A ATP-dependent RNA helic 100.0 1.1E-27 3.6E-32 221.7 18.3 157 364-527 5-161 (163)
80 1t5i_A C_terminal domain of A 99.9 7.1E-28 2.4E-32 224.9 14.1 161 366-533 3-164 (172)
81 1fuk_A Eukaryotic initiation f 99.9 5.8E-28 2E-32 224.0 12.4 159 367-532 2-161 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 4.6E-27 1.6E-31 220.1 16.0 157 365-528 4-167 (175)
83 3eaq_A Heat resistant RNA depe 99.9 2.8E-26 9.6E-31 221.5 16.2 150 370-526 7-156 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.3E-25 4.5E-30 227.2 15.9 146 369-521 3-148 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.1E-26 3.6E-31 216.6 0.0 151 368-525 3-154 (170)
86 3b6e_A Interferon-induced heli 99.9 2.9E-24 1E-28 207.6 14.0 170 161-338 30-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 1.7E-22 5.8E-27 222.1 20.2 306 161-507 5-520 (540)
88 3llm_A ATP-dependent RNA helic 99.9 1.2E-22 4.2E-27 199.3 15.6 182 150-354 47-231 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 5E-20 1.7E-24 203.1 32.1 314 164-507 3-530 (551)
90 1rif_A DAR protein, DNA helica 99.9 2.8E-22 9.7E-27 202.4 11.1 156 163-344 112-267 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 1.3E-18 4.6E-23 193.4 24.1 81 164-256 3-87 (620)
92 1z5z_A Helicase of the SNF2/RA 99.8 3.5E-19 1.2E-23 177.9 12.6 128 376-508 92-224 (271)
93 2fz4_A DNA repair protein RAD2 99.8 6.4E-19 2.2E-23 172.9 14.3 139 163-342 92-231 (237)
94 1w36_D RECD, exodeoxyribonucle 98.9 1.8E-09 6.1E-14 119.9 7.7 146 166-338 151-298 (608)
95 3upu_A ATP-dependent DNA helic 98.1 9.5E-06 3.2E-10 86.9 11.6 70 159-240 20-94 (459)
96 3e1s_A Exodeoxyribonuclease V, 98.1 8.5E-06 2.9E-10 89.4 10.9 121 164-336 189-313 (574)
97 2gk6_A Regulator of nonsense t 98.1 1.3E-05 4.4E-10 89.3 12.3 70 162-243 178-247 (624)
98 2xzl_A ATP-dependent helicase 98.1 2.3E-05 7.9E-10 89.3 14.2 70 162-243 358-427 (802)
99 3lfu_A DNA helicase II; SF1 he 98.0 0.00036 1.2E-08 78.0 22.9 71 163-244 8-78 (647)
100 4b3f_X DNA-binding protein smu 98.0 9.8E-06 3.3E-10 90.7 9.4 67 164-243 189-256 (646)
101 3hgt_A HDA1 complex subunit 3; 98.0 5.6E-05 1.9E-09 75.6 12.4 149 377-537 106-264 (328)
102 2wjy_A Regulator of nonsense t 97.9 3.5E-05 1.2E-09 87.7 11.3 70 162-243 354-423 (800)
103 2o0j_A Terminase, DNA packagin 97.2 0.0045 1.5E-07 63.9 14.7 71 164-245 163-233 (385)
104 3ec2_A DNA replication protein 97.1 0.0017 6E-08 59.5 9.6 30 166-195 16-54 (180)
105 3cpe_A Terminase, DNA packagin 96.8 0.013 4.6E-07 64.4 14.8 73 164-247 163-235 (592)
106 3vkw_A Replicase large subunit 96.6 0.0064 2.2E-07 63.6 9.5 108 180-338 162-269 (446)
107 1pjr_A PCRA; DNA repair, DNA r 96.4 0.012 4.2E-07 66.4 11.6 109 163-304 10-120 (724)
108 2zpa_A Uncharacterized protein 96.4 0.0072 2.5E-07 66.5 8.7 112 164-339 175-288 (671)
109 1uaa_A REP helicase, protein ( 96.2 0.0074 2.5E-07 67.6 8.3 70 164-244 2-71 (673)
110 2kjq_A DNAA-related protein; s 96.2 0.0085 2.9E-07 53.2 6.8 18 178-195 35-52 (149)
111 3te6_A Regulatory protein SIR3 96.2 0.051 1.7E-06 54.5 13.1 43 293-339 131-173 (318)
112 1d2n_A N-ethylmaleimide-sensit 96.0 0.061 2.1E-06 52.6 12.5 17 180-196 65-81 (272)
113 2orw_A Thymidine kinase; TMTK, 95.9 0.0022 7.7E-08 59.2 1.6 38 179-229 3-40 (184)
114 2v1u_A Cell division control p 95.7 0.088 3E-06 53.9 13.1 17 179-195 44-60 (387)
115 1xx6_A Thymidine kinase; NESG, 95.7 0.013 4.4E-07 54.3 5.9 39 179-230 8-46 (191)
116 3h4m_A Proteasome-activating n 95.6 0.011 3.8E-07 58.3 5.3 18 178-195 50-67 (285)
117 1l8q_A Chromosomal replication 95.5 0.052 1.8E-06 54.6 10.2 17 179-195 37-53 (324)
118 3kl4_A SRP54, signal recogniti 95.4 0.071 2.4E-06 55.8 11.0 55 293-351 178-235 (433)
119 2chg_A Replication factor C sm 95.3 0.24 8.2E-06 45.9 13.5 16 180-195 39-54 (226)
120 3eie_A Vacuolar protein sortin 95.1 0.16 5.5E-06 51.0 12.2 16 180-195 52-67 (322)
121 1a5t_A Delta prime, HOLB; zinc 95.1 0.078 2.7E-06 53.7 9.9 33 165-197 3-42 (334)
122 2b8t_A Thymidine kinase; deoxy 95.1 0.027 9.1E-07 53.5 5.9 90 179-306 12-101 (223)
123 2j9r_A Thymidine kinase; TK1, 95.0 0.017 5.9E-07 54.2 4.4 39 179-230 28-66 (214)
124 3u4q_A ATP-dependent helicase/ 95.0 0.034 1.2E-06 66.6 7.8 71 164-243 10-80 (1232)
125 3e2i_A Thymidine kinase; Zn-bi 94.9 0.021 7.3E-07 53.5 4.6 40 178-230 27-66 (219)
126 2w58_A DNAI, primosome compone 94.9 0.12 3.9E-06 47.9 9.7 16 180-195 55-70 (202)
127 2z4s_A Chromosomal replication 94.8 0.12 4.1E-06 54.5 10.8 45 294-341 194-239 (440)
128 2qby_B CDC6 homolog 3, cell di 94.8 0.14 4.6E-06 52.6 11.0 16 180-195 46-61 (384)
129 2qgz_A Helicase loader, putati 94.8 0.11 3.7E-06 52.0 9.7 17 179-195 152-168 (308)
130 3bos_A Putative DNA replicatio 94.7 0.047 1.6E-06 51.8 6.8 18 178-195 51-68 (242)
131 2qby_A CDC6 homolog 1, cell di 94.7 0.089 3.1E-06 53.8 9.3 17 179-195 45-61 (386)
132 1gm5_A RECG; helicase, replica 94.6 0.11 3.7E-06 58.8 10.1 75 401-475 417-496 (780)
133 3syl_A Protein CBBX; photosynt 94.6 0.053 1.8E-06 54.0 6.9 17 180-196 68-84 (309)
134 1fnn_A CDC6P, cell division co 94.6 0.17 5.7E-06 51.9 11.0 15 181-195 46-60 (389)
135 1jbk_A CLPB protein; beta barr 94.4 0.54 1.9E-05 42.2 13.1 16 180-195 44-59 (195)
136 2qz4_A Paraplegin; AAA+, SPG7, 94.4 0.088 3E-06 50.8 8.0 17 179-195 39-55 (262)
137 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.12 4E-06 52.1 9.0 16 180-195 46-61 (322)
138 1w4r_A Thymidine kinase; type 94.2 0.083 2.8E-06 48.8 6.8 38 179-229 20-57 (195)
139 2p65_A Hypothetical protein PF 94.1 0.11 3.7E-06 46.9 7.6 17 179-195 43-59 (187)
140 2orv_A Thymidine kinase; TP4A 94.1 0.17 5.7E-06 48.0 8.7 40 178-230 18-57 (234)
141 3u61_B DNA polymerase accessor 94.0 0.1 3.5E-06 52.4 7.7 30 293-322 104-133 (324)
142 4b4t_M 26S protease regulatory 94.0 0.066 2.2E-06 56.1 6.3 54 139-195 175-231 (434)
143 4b4t_J 26S protease regulatory 93.7 0.079 2.7E-06 54.7 6.2 53 140-195 143-198 (405)
144 3cf0_A Transitional endoplasmi 93.5 0.11 3.6E-06 51.8 6.7 18 178-195 48-65 (301)
145 2hjv_A ATP-dependent RNA helic 93.5 1.5 5.2E-05 38.8 13.8 71 223-303 38-112 (163)
146 3dm5_A SRP54, signal recogniti 93.2 0.54 1.8E-05 49.2 11.6 17 180-196 101-117 (443)
147 2p6n_A ATP-dependent RNA helic 93.2 3.1 0.00011 37.9 15.7 72 222-303 56-131 (191)
148 2qp9_X Vacuolar protein sortin 93.1 0.13 4.6E-06 52.4 6.8 18 179-196 84-101 (355)
149 1sxj_D Activator 1 41 kDa subu 93.0 0.45 1.5E-05 48.0 10.7 16 180-195 59-74 (353)
150 4b4t_H 26S protease regulatory 92.7 0.16 5.6E-06 53.2 6.8 54 139-195 203-259 (467)
151 4b4t_L 26S protease subunit RP 92.6 0.11 3.7E-06 54.4 5.3 17 179-195 215-231 (437)
152 1iqp_A RFCS; clamp loader, ext 92.3 0.73 2.5E-05 45.7 11.1 16 181-196 48-63 (327)
153 3pfi_A Holliday junction ATP-d 92.3 0.32 1.1E-05 48.9 8.4 16 180-195 56-71 (338)
154 1sxj_E Activator 1 40 kDa subu 92.3 0.29 1E-05 49.5 8.2 42 292-338 132-173 (354)
155 2dr3_A UPF0273 protein PH0284; 92.1 0.4 1.4E-05 45.5 8.4 53 177-243 21-73 (247)
156 1t5i_A C_terminal domain of A 91.9 2 6.8E-05 38.4 12.5 73 222-304 33-109 (172)
157 3vfd_A Spastin; ATPase, microt 91.9 0.43 1.5E-05 49.2 8.9 18 179-196 148-165 (389)
158 2zan_A Vacuolar protein sortin 91.9 0.22 7.7E-06 52.4 6.8 17 179-195 167-183 (444)
159 2w0m_A SSO2452; RECA, SSPF, un 91.8 0.6 2E-05 43.7 9.3 18 178-195 22-39 (235)
160 3pvs_A Replication-associated 91.8 0.18 6.1E-06 53.2 5.9 17 180-196 51-67 (447)
161 3b9p_A CG5977-PA, isoform A; A 91.8 0.54 1.8E-05 46.3 9.2 17 179-195 54-70 (297)
162 3d8b_A Fidgetin-like protein 1 91.8 0.23 7.8E-06 50.7 6.5 18 179-196 117-134 (357)
163 1sxj_A Activator 1 95 kDa subu 91.5 0.29 1E-05 52.6 7.4 17 180-196 78-94 (516)
164 1njg_A DNA polymerase III subu 91.5 1.2 4E-05 41.5 11.0 15 181-195 47-61 (250)
165 1fuk_A Eukaryotic initiation f 91.4 0.83 2.8E-05 40.6 9.2 72 222-303 32-107 (165)
166 3eaq_A Heat resistant RNA depe 91.4 0.74 2.5E-05 43.0 9.2 68 223-300 34-105 (212)
167 1g5t_A COB(I)alamin adenosyltr 91.3 0.92 3.2E-05 41.7 9.4 51 293-347 119-171 (196)
168 1n0w_A DNA repair protein RAD5 91.2 0.88 3E-05 43.0 9.8 21 178-198 23-43 (243)
169 2cvh_A DNA repair and recombin 91.2 0.67 2.3E-05 43.1 8.8 20 178-197 19-38 (220)
170 2rb4_A ATP-dependent RNA helic 91.1 0.56 1.9E-05 42.2 7.8 71 222-302 36-110 (175)
171 2pk2_A Cyclin-T1, protein TAT; 91.1 0.13 4.6E-06 52.4 3.9 27 510-536 231-257 (358)
172 4b4t_I 26S protease regulatory 91.1 0.19 6.4E-06 52.2 5.0 17 179-195 216-232 (437)
173 2ehv_A Hypothetical protein PH 91.0 0.21 7.2E-06 47.6 5.1 31 292-322 133-168 (251)
174 3oiy_A Reverse gyrase helicase 90.8 0.67 2.3E-05 48.0 9.1 75 401-475 64-145 (414)
175 1cr0_A DNA primase/helicase; R 90.7 0.68 2.3E-05 45.6 8.7 21 176-196 32-52 (296)
176 2bjv_A PSP operon transcriptio 90.5 1.2 4.1E-05 42.9 10.1 19 177-195 27-45 (265)
177 1lv7_A FTSH; alpha/beta domain 90.4 0.83 2.8E-05 43.8 8.8 17 179-195 45-61 (257)
178 2q6t_A DNAB replication FORK h 90.4 1.2 4.1E-05 46.8 10.7 113 179-309 200-325 (444)
179 2r6a_A DNAB helicase, replicat 90.3 1 3.6E-05 47.4 10.2 26 178-204 202-227 (454)
180 1w5s_A Origin recognition comp 90.1 0.85 2.9E-05 46.9 9.2 16 180-195 51-68 (412)
181 4b4t_K 26S protease regulatory 90.0 0.43 1.5E-05 49.8 6.7 17 179-195 206-222 (428)
182 2eyq_A TRCF, transcription-rep 89.9 1.1 3.6E-05 53.2 10.6 75 401-475 652-731 (1151)
183 3t15_A Ribulose bisphosphate c 89.8 0.49 1.7E-05 46.7 6.7 16 180-195 37-52 (293)
184 2z43_A DNA repair and recombin 89.6 1.1 3.6E-05 45.0 9.1 21 179-199 107-127 (324)
185 1sxj_B Activator 1 37 kDa subu 89.6 1.4 4.7E-05 43.6 9.9 15 181-195 44-58 (323)
186 1jr3_A DNA polymerase III subu 89.6 2.3 8E-05 42.9 11.9 16 181-196 40-55 (373)
187 1t6n_A Probable ATP-dependent 89.5 2.7 9.3E-05 38.9 11.5 72 401-475 82-164 (220)
188 1vma_A Cell division protein F 89.4 3 0.0001 41.3 12.0 17 179-195 104-120 (306)
189 1sxj_C Activator 1 40 kDa subu 89.2 1.2 4E-05 44.9 9.1 38 293-335 109-146 (340)
190 3hu3_A Transitional endoplasmi 89.1 0.55 1.9E-05 50.0 6.8 18 179-196 238-255 (489)
191 2fna_A Conserved hypothetical 89.0 12 0.0004 37.1 16.6 43 277-322 123-168 (357)
192 2gno_A DNA polymerase III, gam 88.9 1.4 4.9E-05 43.6 9.3 17 181-197 20-36 (305)
193 3hjh_A Transcription-repair-co 88.6 1.3 4.4E-05 47.0 9.2 89 178-285 13-117 (483)
194 2qen_A Walker-type ATPase; unk 88.6 2.1 7.1E-05 42.7 10.6 18 178-195 30-47 (350)
195 1nlf_A Regulatory protein REPA 88.6 0.96 3.3E-05 44.1 7.7 23 176-198 27-49 (279)
196 3e70_C DPA, signal recognition 88.5 4.7 0.00016 40.3 12.9 54 294-351 211-265 (328)
197 2jgn_A DBX, DDX3, ATP-dependen 88.5 4.7 0.00016 36.4 12.0 71 222-302 48-122 (185)
198 3i32_A Heat resistant RNA depe 88.1 1.2 4.3E-05 44.0 8.2 71 223-303 31-105 (300)
199 3bh0_A DNAB-like replicative h 87.3 1.6 5.5E-05 43.5 8.6 116 177-308 66-195 (315)
200 2ce7_A Cell division protein F 87.3 0.8 2.7E-05 48.5 6.6 16 180-195 50-65 (476)
201 4a1f_A DNAB helicase, replicat 86.9 1.1 3.9E-05 45.0 7.1 116 177-308 44-170 (338)
202 1hqc_A RUVB; extended AAA-ATPa 86.8 0.62 2.1E-05 46.4 5.2 17 179-195 38-54 (324)
203 1iy2_A ATP-dependent metallopr 86.8 3.1 0.00011 40.3 10.2 16 180-195 74-89 (278)
204 3m6a_A ATP-dependent protease 86.8 0.76 2.6E-05 49.7 6.2 18 178-195 107-124 (543)
205 4ddu_A Reverse gyrase; topoiso 86.4 1.5 5E-05 51.7 8.7 74 401-475 121-202 (1104)
206 1ls1_A Signal recognition part 86.2 4.6 0.00016 39.6 11.1 18 178-195 97-114 (295)
207 2i4i_A ATP-dependent RNA helic 86.0 2.9 0.0001 42.8 10.1 70 221-300 277-350 (417)
208 2i1q_A DNA repair and recombin 85.9 1.2 4E-05 44.5 6.8 23 179-201 98-120 (322)
209 3fht_A ATP-dependent RNA helic 85.2 7.1 0.00024 39.7 12.6 72 222-303 268-343 (412)
210 2px0_A Flagellar biosynthesis 85.1 4.2 0.00014 40.0 10.2 18 179-196 105-122 (296)
211 1oyw_A RECQ helicase, ATP-depe 84.6 1.6 5.4E-05 47.0 7.3 59 401-459 65-123 (523)
212 3i5x_A ATP-dependent RNA helic 84.5 4.3 0.00015 43.7 10.9 76 222-304 341-420 (563)
213 3ber_A Probable ATP-dependent 84.5 6.2 0.00021 37.5 10.9 71 401-475 111-192 (249)
214 3cf2_A TER ATPase, transitiona 84.3 1.1 3.7E-05 50.6 6.0 53 140-195 472-527 (806)
215 2iut_A DNA translocase FTSK; n 84.3 1 3.5E-05 48.5 5.6 26 179-205 214-239 (574)
216 1xp8_A RECA protein, recombina 84.2 0.84 2.9E-05 46.6 4.7 27 178-205 73-99 (366)
217 1qvr_A CLPB protein; coiled co 84.1 4.5 0.00016 46.2 11.3 16 180-195 192-207 (854)
218 2d7d_A Uvrabc system protein B 83.9 8.8 0.0003 42.4 13.2 76 221-306 446-525 (661)
219 2oxc_A Probable ATP-dependent 83.8 4.1 0.00014 38.1 9.2 70 401-475 92-172 (230)
220 2yhs_A FTSY, cell division pro 83.6 6 0.00021 41.8 11.0 59 293-351 374-435 (503)
221 2v1x_A ATP-dependent DNA helic 83.6 1.8 6.1E-05 47.3 7.3 59 401-459 84-144 (591)
222 3fe2_A Probable ATP-dependent 83.5 3.6 0.00012 38.8 8.7 71 401-475 102-182 (242)
223 3k1j_A LON protease, ATP-depen 83.5 1.6 5.6E-05 47.8 7.0 21 175-195 56-76 (604)
224 2zr9_A Protein RECA, recombina 83.3 1.5 5.2E-05 44.3 6.2 22 178-199 60-81 (349)
225 3pey_A ATP-dependent RNA helic 83.3 12 0.00041 37.6 13.2 75 221-305 244-322 (395)
226 2l82_A Designed protein OR32; 83.2 16 0.00056 29.3 10.7 47 404-450 5-51 (162)
227 1hv8_A Putative ATP-dependent 82.9 11 0.00038 37.3 12.7 72 222-303 240-315 (367)
228 4a74_A DNA repair and recombin 82.9 3.4 0.00012 38.3 8.2 18 178-195 24-41 (231)
229 3co5_A Putative two-component 82.8 0.99 3.4E-05 39.1 4.0 21 175-195 23-43 (143)
230 2chq_A Replication factor C sm 82.8 3.3 0.00011 40.6 8.5 15 181-195 40-54 (319)
231 3iuy_A Probable ATP-dependent 82.7 2.6 9E-05 39.3 7.3 71 401-475 94-173 (228)
232 1xti_A Probable ATP-dependent 82.5 7.2 0.00025 39.4 11.1 72 401-475 76-158 (391)
233 3bgw_A DNAB-like replicative h 82.4 2.2 7.6E-05 44.7 7.2 24 178-201 196-219 (444)
234 3sqw_A ATP-dependent RNA helic 82.2 6.7 0.00023 42.5 11.3 76 222-304 290-369 (579)
235 2gxq_A Heat resistant RNA depe 81.5 4.7 0.00016 36.7 8.5 72 400-475 71-150 (207)
236 3n70_A Transport activator; si 81.1 1.2 4.1E-05 38.6 3.9 21 176-196 21-41 (145)
237 3cf2_A TER ATPase, transitiona 80.7 2.6 8.8E-05 47.6 7.3 16 180-195 239-254 (806)
238 3hr8_A Protein RECA; alpha and 80.5 1.2 4.2E-05 45.1 4.3 25 179-204 61-85 (356)
239 2l8b_A Protein TRAI, DNA helic 80.2 1 3.6E-05 40.7 3.2 121 166-338 36-158 (189)
240 1v5w_A DMC1, meiotic recombina 79.9 3.7 0.00013 41.4 7.6 26 173-198 111-141 (343)
241 1c4o_A DNA nucleotide excision 79.8 13 0.00045 40.9 12.7 75 222-306 441-519 (664)
242 1s2m_A Putative ATP-dependent 79.7 21 0.00073 35.9 13.6 71 222-302 260-334 (400)
243 1vec_A ATP-dependent RNA helic 79.7 11 0.00037 34.2 10.3 71 401-475 71-152 (206)
244 2vhj_A Ntpase P4, P4; non- hyd 79.4 1.3 4.5E-05 44.1 3.9 22 177-198 121-142 (331)
245 2dhr_A FTSH; AAA+ protein, hex 79.3 3.1 0.00011 44.2 7.1 16 180-195 65-80 (499)
246 2j0s_A ATP-dependent RNA helic 79.0 22 0.00075 36.0 13.5 71 222-302 278-352 (410)
247 3bor_A Human initiation factor 78.9 11 0.00036 35.3 10.2 72 401-475 98-179 (237)
248 1r6b_X CLPA protein; AAA+, N-t 78.7 7.5 0.00025 43.7 10.5 18 179-196 207-224 (758)
249 1e9r_A Conjugal transfer prote 78.4 1.6 5.4E-05 45.6 4.4 44 178-234 52-95 (437)
250 2eyu_A Twitching motility prot 78.3 1.9 6.4E-05 41.7 4.6 28 176-205 22-49 (261)
251 2db3_A ATP-dependent RNA helic 77.9 5.1 0.00017 41.6 8.2 68 223-300 303-374 (434)
252 3cmu_A Protein RECA, recombina 77.7 4.7 0.00016 49.9 8.7 48 176-237 1078-1125(2050)
253 2yjt_D ATP-dependent RNA helic 79.2 0.46 1.6E-05 42.6 0.0 71 222-302 32-106 (170)
254 3ice_A Transcription terminati 77.6 5.7 0.0002 40.6 8.0 38 166-205 158-198 (422)
255 3pxi_A Negative regulator of g 77.5 7.2 0.00025 43.8 9.9 16 181-196 523-538 (758)
256 1u94_A RECA protein, recombina 77.5 2.1 7.2E-05 43.4 4.9 23 178-200 62-84 (356)
257 3b85_A Phosphate starvation-in 77.5 2.7 9.3E-05 39.0 5.3 38 165-204 8-45 (208)
258 2pl3_A Probable ATP-dependent 76.8 4.7 0.00016 37.7 7.0 70 401-475 97-177 (236)
259 1gku_B Reverse gyrase, TOP-RG; 76.8 6 0.0002 46.3 9.1 73 401-475 99-181 (1054)
260 1wp9_A ATP-dependent RNA helic 76.6 6.8 0.00023 40.6 8.8 90 377-475 32-131 (494)
261 1ypw_A Transitional endoplasmi 76.5 2.4 8.4E-05 48.1 5.6 18 178-195 237-254 (806)
262 2zts_A Putative uncharacterize 75.6 2.4 8.2E-05 40.0 4.5 53 178-243 29-81 (251)
263 3jvv_A Twitching mobility prot 75.2 3.6 0.00012 41.7 5.9 19 177-195 121-139 (356)
264 3cmu_A Protein RECA, recombina 73.9 2 7E-05 53.0 4.2 29 173-201 1415-1449(2050)
265 2v3c_C SRP54, signal recogniti 73.6 17 0.00057 37.8 10.7 18 180-197 100-117 (432)
266 1qde_A EIF4A, translation init 73.3 10 0.00035 34.9 8.3 70 401-475 82-161 (224)
267 1pzn_A RAD51, DNA repair and r 73.1 7.7 0.00026 39.1 7.8 19 179-197 131-149 (349)
268 1q57_A DNA primase/helicase; d 73.0 4.2 0.00014 43.3 6.1 24 178-201 241-264 (503)
269 3lda_A DNA repair protein RAD5 72.7 5.3 0.00018 41.1 6.5 19 179-197 178-196 (400)
270 1yks_A Genome polyprotein [con 72.7 3.2 0.00011 43.4 4.9 67 222-300 179-246 (440)
271 2j37_W Signal recognition part 72.7 30 0.001 36.6 12.5 16 181-196 103-118 (504)
272 2ffh_A Protein (FFH); SRP54, s 71.6 16 0.00055 37.8 9.8 18 179-196 98-115 (425)
273 3nwn_A Kinesin-like protein KI 71.5 2.5 8.4E-05 42.9 3.6 25 172-196 96-122 (359)
274 3io5_A Recombination and repai 71.4 6.9 0.00023 38.9 6.6 90 181-307 30-124 (333)
275 3ly5_A ATP-dependent RNA helic 70.8 15 0.0005 35.1 8.9 71 401-475 126-207 (262)
276 2oap_1 GSPE-2, type II secreti 70.1 2.2 7.7E-05 45.5 3.1 31 165-195 245-276 (511)
277 1wrb_A DJVLGB; RNA helicase, D 69.0 26 0.00088 32.9 10.2 71 401-475 100-180 (253)
278 2gza_A Type IV secretion syste 68.8 2.6 8.8E-05 42.9 3.1 28 175-204 171-198 (361)
279 1q0u_A Bstdead; DEAD protein, 68.4 11 0.00038 34.6 7.3 71 401-475 72-156 (219)
280 1bg2_A Kinesin; motor protein, 68.1 3.3 0.00011 41.4 3.6 25 172-196 69-95 (325)
281 1sky_E F1-ATPase, F1-ATP synth 68.0 13 0.00043 39.0 8.1 20 176-195 148-167 (473)
282 2xxa_A Signal recognition part 68.0 20 0.00068 37.2 9.7 18 180-197 101-118 (433)
283 1p9r_A General secretion pathw 67.5 4.9 0.00017 41.6 4.9 27 169-195 155-183 (418)
284 4f4c_A Multidrug resistance pr 67.3 3.1 0.00011 49.9 3.8 42 292-337 1233-1274(1321)
285 2zfi_A Kinesin-like protein KI 66.7 3.6 0.00012 41.8 3.6 25 172-196 81-107 (366)
286 3dkp_A Probable ATP-dependent 66.6 4.4 0.00015 38.2 4.1 72 401-475 98-181 (245)
287 1f9v_A Kinesin-like protein KA 66.6 3.7 0.00013 41.4 3.7 25 172-196 76-102 (347)
288 2nr8_A Kinesin-like protein KI 66.5 3.6 0.00012 41.6 3.6 25 172-196 95-121 (358)
289 1lvg_A Guanylate kinase, GMP k 66.5 3.9 0.00013 37.4 3.6 18 178-195 3-20 (198)
290 3b6u_A Kinesin-like protein KI 66.5 3.6 0.00012 41.8 3.6 25 172-196 93-119 (372)
291 3dc4_A Kinesin-like protein NO 66.4 3.5 0.00012 41.5 3.4 25 172-196 86-112 (344)
292 1j8m_F SRP54, signal recogniti 66.3 59 0.002 31.6 12.4 19 179-197 98-116 (297)
293 2vvg_A Kinesin-2; motor protei 66.3 3.7 0.00013 41.4 3.6 25 172-196 81-107 (350)
294 2h58_A Kinesin-like protein KI 66.2 3.8 0.00013 41.0 3.6 26 171-196 71-98 (330)
295 2wv9_A Flavivirin protease NS2 66.1 6.2 0.00021 43.7 5.7 67 221-299 411-478 (673)
296 1t5c_A CENP-E protein, centrom 66.0 3.8 0.00013 41.4 3.6 25 172-196 69-95 (349)
297 1v8k_A Kinesin-like protein KI 66.0 3.8 0.00013 42.2 3.6 26 172-197 146-173 (410)
298 1kgd_A CASK, peripheral plasma 65.9 3.8 0.00013 36.7 3.3 18 178-195 4-21 (180)
299 1x88_A Kinesin-like protein KI 65.6 3.5 0.00012 41.8 3.3 25 172-196 80-106 (359)
300 1goj_A Kinesin, kinesin heavy 65.6 3.9 0.00013 41.4 3.6 24 173-196 73-98 (355)
301 3t0q_A AGR253WP; kinesin, alph 65.6 3.8 0.00013 41.4 3.5 25 172-196 77-103 (349)
302 3tbk_A RIG-I helicase domain; 65.6 8.4 0.00029 40.9 6.6 94 378-475 29-133 (555)
303 3gbj_A KIF13B protein; kinesin 65.5 3.9 0.00013 41.4 3.6 25 172-196 84-110 (354)
304 3lre_A Kinesin-like protein KI 65.3 4 0.00014 41.3 3.6 25 172-196 97-123 (355)
305 2xau_A PRE-mRNA-splicing facto 65.3 19 0.00065 40.4 9.6 73 222-300 305-393 (773)
306 2r2a_A Uncharacterized protein 65.2 2.3 7.7E-05 39.3 1.6 43 295-338 88-132 (199)
307 4a2p_A RIG-I, retinoic acid in 65.1 11 0.00036 40.2 7.3 94 378-475 32-136 (556)
308 1fuu_A Yeast initiation factor 65.1 35 0.0012 34.1 10.9 70 401-475 89-168 (394)
309 2y65_A Kinesin, kinesin heavy 65.1 4.1 0.00014 41.4 3.6 25 172-196 76-102 (365)
310 2wbe_C Bipolar kinesin KRP-130 64.9 3.7 0.00013 41.8 3.3 25 172-196 92-118 (373)
311 4etp_A Kinesin-like protein KA 64.7 4.5 0.00015 41.7 3.9 25 172-196 132-158 (403)
312 2oca_A DAR protein, ATP-depend 64.6 23 0.0008 37.2 9.8 74 223-305 350-427 (510)
313 4a14_A Kinesin, kinesin-like p 64.4 4.5 0.00015 40.8 3.8 25 172-196 75-101 (344)
314 4a2q_A RIG-I, retinoic acid in 64.1 16 0.00055 41.2 8.8 95 377-475 272-377 (797)
315 2pt7_A CAG-ALFA; ATPase, prote 64.0 2.9 0.0001 41.9 2.3 27 176-204 168-194 (330)
316 2owm_A Nckin3-434, related to 63.7 4.3 0.00015 42.3 3.6 25 172-196 128-154 (443)
317 2heh_A KIF2C protein; kinesin, 63.2 4.4 0.00015 41.4 3.5 27 172-198 126-154 (387)
318 3eiq_A Eukaryotic initiation f 63.2 5.1 0.00017 40.9 4.1 71 222-302 282-356 (414)
319 1tf7_A KAIC; homohexamer, hexa 62.7 33 0.0011 36.4 10.6 127 176-338 278-416 (525)
320 2rep_A Kinesin-like protein KI 62.4 4.6 0.00016 41.1 3.4 25 172-196 107-133 (376)
321 3cob_A Kinesin heavy chain-lik 62.3 4 0.00014 41.5 3.0 25 172-196 71-97 (369)
322 2v6i_A RNA helicase; membrane, 62.3 8.9 0.0003 39.8 5.8 51 222-277 173-224 (431)
323 2ewv_A Twitching motility prot 62.3 3.8 0.00013 41.8 2.8 28 176-205 133-160 (372)
324 3b5x_A Lipid A export ATP-bind 62.2 11 0.00038 40.8 6.7 31 292-322 496-526 (582)
325 3bfn_A Kinesin-like protein KI 61.9 3.8 0.00013 41.9 2.7 23 174-196 92-116 (388)
326 3u06_A Protein claret segregat 61.2 5.2 0.00018 41.3 3.6 26 171-196 129-156 (412)
327 1ry6_A Internal kinesin; kines 60.9 4.9 0.00017 40.7 3.3 19 178-196 82-102 (360)
328 4ehx_A Tetraacyldisaccharide 4 60.8 14 0.00047 36.6 6.6 29 401-430 226-254 (315)
329 3vaa_A Shikimate kinase, SK; s 60.8 5.7 0.0002 36.2 3.5 18 178-195 24-41 (199)
330 1z6g_A Guanylate kinase; struc 60.6 5.5 0.00019 37.0 3.5 19 176-194 20-38 (218)
331 3rc3_A ATP-dependent RNA helic 60.1 15 0.00053 40.5 7.4 73 223-306 323-401 (677)
332 1ex7_A Guanylate kinase; subst 60.0 5.6 0.00019 36.1 3.3 15 180-194 2-16 (186)
333 3tr0_A Guanylate kinase, GMP k 59.7 5.6 0.00019 36.1 3.3 18 178-195 6-23 (205)
334 3o8b_A HCV NS3 protease/helica 59.7 8.4 0.00029 42.4 5.1 66 220-299 396-461 (666)
335 2x8a_A Nuclear valosin-contain 59.5 2.3 7.9E-05 41.3 0.6 53 140-195 5-60 (274)
336 1ixz_A ATP-dependent metallopr 59.3 4.2 0.00014 38.6 2.4 53 140-195 11-65 (254)
337 3hws_A ATP-dependent CLP prote 59.2 14 0.00046 37.3 6.4 19 178-196 50-68 (363)
338 3cmw_A Protein RECA, recombina 59.0 11 0.00037 46.0 6.3 120 180-343 1432-1571(1706)
339 1znw_A Guanylate kinase, GMP k 58.3 5.9 0.0002 36.4 3.2 29 175-205 16-44 (207)
340 1ofh_A ATP-dependent HSL prote 58.3 17 0.00058 35.2 6.8 18 179-196 50-67 (310)
341 1qhx_A CPT, protein (chloramph 58.0 4.5 0.00016 35.8 2.3 18 179-196 3-20 (178)
342 3a8t_A Adenylate isopentenyltr 57.4 5.4 0.00018 40.0 2.8 17 180-196 41-57 (339)
343 3iij_A Coilin-interacting nucl 57.3 5.5 0.00019 35.4 2.7 20 177-196 9-28 (180)
344 4ag6_A VIRB4 ATPase, type IV s 57.2 11 0.00037 38.5 5.3 43 177-232 33-75 (392)
345 3a00_A Guanylate kinase, GMP k 57.2 6.7 0.00023 35.3 3.3 16 180-195 2-17 (186)
346 2whx_A Serine protease/ntpase/ 57.1 13 0.00046 40.5 6.2 66 222-299 357-423 (618)
347 3nbx_X ATPase RAVA; AAA+ ATPas 57.1 10 0.00035 40.3 5.1 28 168-195 30-57 (500)
348 1kag_A SKI, shikimate kinase I 57.0 7.6 0.00026 34.1 3.6 17 179-195 4-20 (173)
349 2qmh_A HPR kinase/phosphorylas 57.0 5.2 0.00018 36.8 2.4 18 178-195 33-50 (205)
350 3tau_A Guanylate kinase, GMP k 56.4 6.3 0.00022 36.2 3.0 18 178-195 7-24 (208)
351 2r44_A Uncharacterized protein 56.0 5.2 0.00018 39.7 2.5 22 174-195 41-62 (331)
352 3lw7_A Adenylate kinase relate 56.0 4.9 0.00017 35.1 2.2 15 181-195 3-17 (179)
353 3cmw_A Protein RECA, recombina 55.9 6.6 0.00023 47.9 3.7 21 179-199 732-752 (1706)
354 3exa_A TRNA delta(2)-isopenten 55.5 5.5 0.00019 39.5 2.5 17 180-196 4-20 (322)
355 3gk5_A Uncharacterized rhodane 55.4 9 0.00031 31.0 3.5 38 400-437 54-91 (108)
356 1zp6_A Hypothetical protein AT 54.9 4 0.00014 36.7 1.3 19 177-195 7-25 (191)
357 1ojl_A Transcriptional regulat 54.8 7.7 0.00026 38.2 3.5 18 178-195 24-41 (304)
358 2jlq_A Serine protease subunit 54.7 9.3 0.00032 39.9 4.4 66 222-299 190-256 (451)
359 3ipz_A Monothiol glutaredoxin- 54.7 67 0.0023 25.7 8.8 56 401-456 17-78 (109)
360 2i3b_A HCR-ntpase, human cance 54.7 9.4 0.00032 34.7 3.8 29 292-320 103-133 (189)
361 3g5j_A Putative ATP/GTP bindin 54.5 28 0.00097 28.8 6.7 37 402-438 90-127 (134)
362 3c8u_A Fructokinase; YP_612366 54.3 7.4 0.00025 35.7 3.1 27 178-206 21-47 (208)
363 3foz_A TRNA delta(2)-isopenten 54.0 6.6 0.00023 38.8 2.8 16 181-196 12-27 (316)
364 4f4c_A Multidrug resistance pr 54.0 14 0.00047 44.4 6.1 31 292-322 570-600 (1321)
365 3trf_A Shikimate kinase, SK; a 54.0 6.9 0.00023 34.9 2.8 18 179-196 5-22 (185)
366 2ze6_A Isopentenyl transferase 54.0 6.6 0.00023 37.5 2.8 15 181-195 3-17 (253)
367 1rj9_A FTSY, signal recognitio 54.0 12 0.00041 36.8 4.8 26 179-206 102-127 (304)
368 2j41_A Guanylate kinase; GMP, 53.7 7.2 0.00025 35.4 3.0 19 177-195 4-22 (207)
369 1ye8_A Protein THEP1, hypothet 53.6 8.4 0.00029 34.6 3.3 23 181-205 2-24 (178)
370 2qor_A Guanylate kinase; phosp 53.6 5.7 0.00019 36.3 2.2 20 176-195 9-28 (204)
371 3foj_A Uncharacterized protein 53.4 9.3 0.00032 30.4 3.2 37 400-436 55-91 (100)
372 1s96_A Guanylate kinase, GMP k 53.3 7.9 0.00027 36.1 3.2 19 176-194 13-31 (219)
373 3eme_A Rhodanese-like domain p 53.3 9.1 0.00031 30.6 3.2 37 400-436 55-91 (103)
374 3b9q_A Chloroplast SRP recepto 53.1 11 0.00039 37.0 4.4 27 178-206 99-125 (302)
375 3iwh_A Rhodanese-like domain p 53.0 10 0.00034 30.6 3.4 36 400-435 55-90 (103)
376 3dmn_A Putative DNA helicase; 52.9 1.2E+02 0.004 26.6 12.3 80 380-479 45-124 (174)
377 2jtq_A Phage shock protein E; 52.6 31 0.0011 26.1 6.2 36 400-435 40-75 (85)
378 1z6t_A APAF-1, apoptotic prote 52.3 67 0.0023 34.4 11.0 18 179-196 147-164 (591)
379 3fmp_B ATP-dependent RNA helic 52.2 3 0.0001 43.9 0.0 69 221-299 334-406 (479)
380 4gl2_A Interferon-induced heli 52.1 7.5 0.00026 43.0 3.3 73 222-300 402-488 (699)
381 1kht_A Adenylate kinase; phosp 52.1 6.4 0.00022 35.1 2.3 17 179-195 3-19 (192)
382 4eun_A Thermoresistant glucoki 52.0 9.8 0.00033 34.6 3.5 18 178-195 28-45 (200)
383 3ney_A 55 kDa erythrocyte memb 51.7 8.3 0.00029 35.3 3.0 19 177-195 17-35 (197)
384 1tue_A Replication protein E1; 51.6 7.4 0.00025 36.0 2.6 17 180-196 59-75 (212)
385 2v9p_A Replication protein E1; 51.6 8.3 0.00028 38.0 3.1 27 177-205 124-150 (305)
386 1um8_A ATP-dependent CLP prote 51.4 27 0.00094 35.1 7.2 18 179-196 72-89 (376)
387 3kta_A Chromosome segregation 50.6 9.2 0.00032 33.9 3.1 22 181-204 28-49 (182)
388 1wv9_A Rhodanese homolog TT165 50.6 13 0.00045 29.0 3.7 35 402-436 54-88 (94)
389 1y63_A LMAJ004144AAA protein; 50.4 7.2 0.00025 35.0 2.3 19 178-196 9-27 (184)
390 1htw_A HI0065; nucleotide-bind 50.4 13 0.00046 32.5 4.0 27 177-205 31-57 (158)
391 3fmo_B ATP-dependent RNA helic 50.2 36 0.0012 33.1 7.6 68 401-475 162-241 (300)
392 2ykg_A Probable ATP-dependent 50.1 22 0.00076 39.1 6.7 71 401-475 61-142 (696)
393 3kb2_A SPBC2 prophage-derived 49.6 7.1 0.00024 34.1 2.1 15 181-195 3-17 (173)
394 4gp7_A Metallophosphoesterase; 49.2 5.4 0.00018 35.4 1.2 19 178-196 8-26 (171)
395 1ly1_A Polynucleotide kinase; 49.0 7.4 0.00025 34.3 2.2 15 181-195 4-18 (181)
396 3crm_A TRNA delta(2)-isopenten 49.0 8.8 0.0003 38.2 2.8 17 180-196 6-22 (323)
397 3uie_A Adenylyl-sulfate kinase 48.6 10 0.00034 34.5 3.0 30 165-195 12-41 (200)
398 1knq_A Gluconate kinase; ALFA/ 48.5 10 0.00035 33.4 3.0 17 179-195 8-24 (175)
399 2yan_A Glutaredoxin-3; oxidore 48.4 98 0.0033 24.3 9.1 55 402-456 17-77 (105)
400 3zyw_A Glutaredoxin-3; metal b 48.3 78 0.0027 25.5 8.3 56 401-456 15-76 (111)
401 1nks_A Adenylate kinase; therm 48.3 25 0.00086 31.1 5.7 15 181-195 3-17 (194)
402 3nwj_A ATSK2; P loop, shikimat 48.2 14 0.00046 35.3 4.0 19 177-195 46-64 (250)
403 2og2_A Putative signal recogni 48.1 15 0.0005 37.2 4.4 26 179-206 157-182 (359)
404 1m7g_A Adenylylsulfate kinase; 48.0 17 0.00059 33.2 4.6 30 165-195 12-41 (211)
405 3hix_A ALR3790 protein; rhodan 47.2 15 0.00052 29.5 3.6 36 401-436 52-88 (106)
406 3uk6_A RUVB-like 2; hexameric 47.1 9.7 0.00033 38.2 2.9 17 180-196 71-87 (368)
407 1f2t_A RAD50 ABC-ATPase; DNA d 47.0 13 0.00044 32.2 3.3 15 181-195 25-39 (149)
408 3u4q_B ATP-dependent helicase/ 46.7 16 0.00053 43.3 5.0 51 382-433 324-375 (1166)
409 3tif_A Uncharacterized ABC tra 46.3 6.1 0.00021 37.3 1.1 26 177-204 29-54 (235)
410 2f1r_A Molybdopterin-guanine d 46.2 7.8 0.00027 34.6 1.8 24 181-206 4-27 (171)
411 3cm0_A Adenylate kinase; ATP-b 46.0 6.7 0.00023 35.0 1.3 18 179-196 4-21 (186)
412 4a2w_A RIG-I, retinoic acid in 45.9 22 0.00074 41.0 5.9 95 377-475 272-377 (936)
413 3asz_A Uridine kinase; cytidin 45.8 13 0.00045 33.8 3.4 25 179-205 6-30 (211)
414 2z0m_A 337AA long hypothetical 45.5 37 0.0013 33.0 7.0 70 401-475 56-135 (337)
415 2c9o_A RUVB-like 1; hexameric 45.4 15 0.00051 38.4 4.2 18 179-196 63-80 (456)
416 3d3q_A TRNA delta(2)-isopenten 45.4 11 0.00037 37.8 2.8 16 181-196 9-24 (340)
417 1in4_A RUVB, holliday junction 45.2 13 0.00046 36.9 3.6 16 180-195 52-67 (334)
418 2ius_A DNA translocase FTSK; n 45.0 15 0.00051 39.0 4.0 26 178-204 166-191 (512)
419 1u0j_A DNA replication protein 44.9 18 0.0006 34.9 4.2 44 151-197 73-122 (267)
420 3mm4_A Histidine kinase homolo 44.8 1.7E+02 0.0058 26.0 14.4 68 176-243 17-84 (206)
421 1w36_B RECB, exodeoxyribonucle 44.8 29 0.00098 41.1 6.9 62 181-243 18-79 (1180)
422 3lnc_A Guanylate kinase, GMP k 44.7 7.9 0.00027 36.1 1.7 20 176-195 24-43 (231)
423 3d1p_A Putative thiosulfate su 44.6 28 0.00094 29.4 5.1 37 400-436 90-127 (139)
424 1z5z_A Helicase of the SNF2/RA 44.4 69 0.0023 30.6 8.5 95 188-304 93-193 (271)
425 2bdt_A BH3686; alpha-beta prot 44.3 9.7 0.00033 34.1 2.2 15 181-195 4-18 (189)
426 1xjc_A MOBB protein homolog; s 43.9 24 0.00084 31.3 4.7 16 180-195 5-20 (169)
427 3e4c_A Caspase-1; zymogen, inf 43.9 32 0.0011 33.7 6.0 48 401-449 60-118 (302)
428 2c95_A Adenylate kinase 1; tra 43.9 11 0.00038 33.7 2.5 20 177-196 7-26 (196)
429 3t61_A Gluconokinase; PSI-biol 43.8 9.9 0.00034 34.5 2.2 16 180-195 19-34 (202)
430 4h1g_A Maltose binding protein 43.7 15 0.0005 41.0 3.9 25 172-196 454-480 (715)
431 2rhm_A Putative kinase; P-loop 43.3 10 0.00035 33.9 2.1 17 179-195 5-21 (193)
432 2r2a_A Uncharacterized protein 42.9 15 0.0005 33.7 3.2 18 181-198 7-24 (199)
433 2bwj_A Adenylate kinase 5; pho 42.9 12 0.00041 33.6 2.6 18 178-195 11-28 (199)
434 3eph_A TRNA isopentenyltransfe 42.8 12 0.00041 38.4 2.7 16 181-196 4-19 (409)
435 1tev_A UMP-CMP kinase; ploop, 42.8 9.2 0.00032 34.1 1.8 17 180-196 4-20 (196)
436 3h75_A Periplasmic sugar-bindi 42.8 2.4E+02 0.0083 27.3 18.6 188 221-427 4-230 (350)
437 2va8_A SSO2462, SKI2-type heli 42.5 85 0.0029 34.6 10.0 74 222-301 254-363 (715)
438 1vt4_I APAF-1 related killer D 42.5 1.1E+02 0.0036 35.8 10.5 35 248-282 243-277 (1221)
439 2r8r_A Sensor protein; KDPD, P 42.4 23 0.00079 33.1 4.4 20 181-200 8-27 (228)
440 2yvu_A Probable adenylyl-sulfa 42.2 23 0.00079 31.4 4.4 19 178-196 12-30 (186)
441 3l9o_A ATP-dependent RNA helic 41.9 38 0.0013 39.7 7.2 64 401-475 227-296 (1108)
442 2k0z_A Uncharacterized protein 41.9 31 0.0011 27.8 4.7 37 400-436 55-91 (110)
443 1zuh_A Shikimate kinase; alpha 41.8 14 0.00048 32.2 2.8 17 180-196 8-24 (168)
444 2fsx_A RV0390, COG0607: rhodan 41.7 27 0.00093 29.9 4.6 36 401-436 80-116 (148)
445 2v54_A DTMP kinase, thymidylat 41.5 10 0.00036 34.2 1.9 18 178-195 3-20 (204)
446 1gvn_B Zeta; postsegregational 41.4 11 0.00037 36.7 2.1 16 180-195 34-49 (287)
447 3nhv_A BH2092 protein; alpha-b 41.4 21 0.0007 30.6 3.7 38 400-437 71-110 (144)
448 3vkg_A Dynein heavy chain, cyt 41.3 18 0.00061 47.0 4.5 48 149-197 873-924 (3245)
449 4akg_A Glutathione S-transfera 41.3 26 0.00089 45.0 5.9 48 149-197 890-941 (2695)
450 2qt1_A Nicotinamide riboside k 41.1 7.8 0.00027 35.4 1.0 20 176-195 18-37 (207)
451 3lwd_A 6-phosphogluconolactona 41.0 44 0.0015 31.1 6.2 27 277-303 44-70 (226)
452 1via_A Shikimate kinase; struc 40.9 16 0.00056 32.1 3.1 17 180-196 5-21 (175)
453 2wci_A Glutaredoxin-4; redox-a 40.7 88 0.003 26.4 7.6 55 402-456 35-95 (135)
454 1e6c_A Shikimate kinase; phosp 40.7 13 0.00045 32.5 2.4 17 180-196 3-19 (173)
455 2jaq_A Deoxyguanosine kinase; 40.6 17 0.0006 32.5 3.3 15 181-195 2-16 (205)
456 2r62_A Cell division protease 40.6 7.9 0.00027 36.9 1.0 18 179-196 44-61 (268)
457 4fcw_A Chaperone protein CLPB; 40.4 14 0.00047 36.0 2.8 17 180-196 48-64 (311)
458 1nij_A Hypothetical protein YJ 40.0 21 0.00071 35.2 4.0 15 181-195 6-20 (318)
459 3fb4_A Adenylate kinase; psych 39.7 12 0.00042 34.1 2.2 16 181-196 2-17 (216)
460 2pze_A Cystic fibrosis transme 39.7 8.7 0.0003 36.0 1.1 27 176-204 31-57 (229)
461 3dmq_A RNA polymerase-associat 39.7 30 0.001 39.9 5.8 74 222-304 505-584 (968)
462 2cbz_A Multidrug resistance-as 39.7 13 0.00045 35.0 2.4 28 176-205 28-55 (237)
463 2pez_A Bifunctional 3'-phospho 39.5 17 0.00059 32.1 3.0 18 178-195 4-21 (179)
464 3gfo_A Cobalt import ATP-bindi 39.2 8.7 0.0003 37.2 1.0 27 176-204 31-57 (275)
465 2ff7_A Alpha-hemolysin translo 39.1 9 0.00031 36.4 1.1 27 176-204 32-58 (247)
466 1gmx_A GLPE protein; transfera 39.1 20 0.00068 28.8 3.1 39 400-438 57-96 (108)
467 1cs1_A CGS, protein (cystathio 39.1 2.9E+02 0.0098 27.2 12.7 76 222-307 93-179 (386)
468 3qf7_A RAD50; ABC-ATPase, ATPa 39.0 18 0.0006 36.6 3.3 16 181-196 25-40 (365)
469 1zd8_A GTP:AMP phosphotransfer 38.9 13 0.00044 34.5 2.1 17 179-195 7-23 (227)
470 1cke_A CK, MSSA, protein (cyti 38.7 19 0.00065 33.1 3.3 16 180-195 6-21 (227)
471 3tqc_A Pantothenate kinase; bi 38.5 28 0.00097 34.4 4.7 24 181-206 94-117 (321)
472 3gx8_A Monothiol glutaredoxin- 38.5 1.6E+02 0.0055 24.0 8.9 45 401-445 15-68 (121)
473 1zu4_A FTSY; GTPase, signal re 38.5 26 0.00089 34.7 4.4 18 179-196 105-122 (320)
474 2iyv_A Shikimate kinase, SK; t 38.4 16 0.00054 32.4 2.6 17 180-196 3-19 (184)
475 1sgw_A Putative ABC transporte 38.4 16 0.00053 33.9 2.6 27 176-204 32-58 (214)
476 1g8p_A Magnesium-chelatase 38 38.4 16 0.00053 36.3 2.8 17 179-195 45-61 (350)
477 3g1w_A Sugar ABC transporter; 38.2 2.6E+02 0.0088 26.2 16.0 27 401-427 186-212 (305)
478 3dl0_A Adenylate kinase; phosp 38.1 14 0.00046 33.9 2.2 16 181-196 2-17 (216)
479 3qks_A DNA double-strand break 38.0 20 0.0007 32.7 3.3 15 181-195 25-39 (203)
480 1np6_A Molybdopterin-guanine d 37.9 21 0.00072 31.8 3.3 15 180-194 7-21 (174)
481 1rz3_A Hypothetical protein rb 37.9 32 0.0011 31.1 4.7 16 180-195 23-38 (201)
482 3b6e_A Interferon-induced heli 37.8 26 0.0009 31.6 4.1 55 401-459 82-140 (216)
483 3hjh_A Transcription-repair-co 37.7 1.9E+02 0.0064 30.2 11.1 112 371-490 17-146 (483)
484 1qf9_A UMP/CMP kinase, protein 37.7 17 0.0006 32.1 2.8 16 181-196 8-23 (194)
485 2yka_B ORF57 protein, 52 kDa i 43.9 6.9 0.00024 22.2 0.0 12 2-13 8-19 (26)
486 1nn5_A Similar to deoxythymidy 37.7 52 0.0018 29.6 6.2 19 178-196 8-26 (215)
487 1zak_A Adenylate kinase; ATP:A 37.6 16 0.00053 33.7 2.5 17 180-196 6-22 (222)
488 1g6h_A High-affinity branched- 37.6 9.8 0.00034 36.4 1.1 27 176-204 30-56 (257)
489 2cdn_A Adenylate kinase; phosp 37.5 14 0.00048 33.4 2.2 16 180-195 21-36 (201)
490 2pt5_A Shikimate kinase, SK; a 37.5 15 0.0005 32.0 2.2 15 181-195 2-16 (168)
491 3h1t_A Type I site-specific re 37.5 53 0.0018 35.2 7.1 78 221-304 440-527 (590)
492 3flh_A Uncharacterized protein 37.4 17 0.00059 30.1 2.5 37 400-436 70-108 (124)
493 1mv5_A LMRA, multidrug resista 37.4 8.6 0.00029 36.4 0.6 30 293-322 156-185 (243)
494 1ukz_A Uridylate kinase; trans 37.2 14 0.00049 33.3 2.2 17 180-196 16-32 (203)
495 1b0u_A Histidine permease; ABC 37.2 10 0.00035 36.4 1.1 30 293-322 170-199 (262)
496 1ji0_A ABC transporter; ATP bi 37.2 10 0.00034 35.9 1.1 26 177-204 30-55 (240)
497 2ghi_A Transport protein; mult 37.2 15 0.00052 35.1 2.4 27 176-204 43-69 (260)
498 2hhg_A Hypothetical protein RP 37.1 24 0.00081 29.8 3.4 36 401-436 86-122 (139)
499 3auy_A DNA double-strand break 37.1 19 0.00066 36.3 3.3 22 182-205 28-49 (371)
500 1tq1_A AT5G66040, senescence-a 37.0 22 0.00076 29.7 3.2 37 399-435 80-117 (129)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.9e-72 Score=602.52 Aligned_cols=409 Identities=46% Similarity=0.816 Sum_probs=377.3
Q ss_pred chhhhcccCCCCCcCCCcccccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCC
Q 007368 111 PFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGS 190 (606)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGs 190 (606)
.+.....++++|+.|+++++++++.+.|.|+.+|++++|++.+.++|..++|.+|||+|+++||.+++++|+|++|+|||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGs 104 (434)
T 2db3_A 25 IFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGS 104 (434)
T ss_dssp HTSCCCCCCTTGGGGGGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTS
T ss_pred HhhcCcccccChhhhcCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCC
Confidence 34344568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcC
Q 007368 191 GKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERG 270 (606)
Q Consensus 191 GKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~ 270 (606)
|||++|++|++..++..... ....+|++|||+|||+||.|++++++++....++++.+++|+.....+...+..+
T Consensus 105 GKT~a~~lpil~~l~~~~~~-----~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~ 179 (434)
T 2db3_A 105 GKTAAFLLPILSKLLEDPHE-----LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRG 179 (434)
T ss_dssp SHHHHHHHHHHHHHHHSCCC-----CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHhcccc-----cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcC
Confidence 99999999999998865321 1233567999999999999999999999988889999999999999998889899
Q ss_pred CcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHh
Q 007368 271 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDF 350 (606)
Q Consensus 271 ~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~ 350 (606)
++|+|+||++|++++.+..+.+.++++|||||||+|++++|.+++..|+..+.+ +..+|+++||||+|.+++.++..+
T Consensus 180 ~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~ 257 (434)
T 2db3_A 180 CHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM--RPEHQTLMFSATFPEEIQRMAGEF 257 (434)
T ss_dssp CSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS--CSSCEEEEEESCCCHHHHHHHHTT
T ss_pred CCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC--CCCceEEEEeccCCHHHHHHHHHh
Confidence 999999999999999988888999999999999999999999999999988643 457899999999999999999999
Q ss_pred hcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEE
Q 007368 351 LANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATT 430 (606)
Q Consensus 351 l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~ 430 (606)
+.++.++.+.........+.+.+..+....|...|.+++... ..++||||++++.|+.+++.|...++++..
T Consensus 258 l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--------~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~ 329 (434)
T 2db3_A 258 LKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ--------ADGTIVFVETKRGADFLASFLSEKEFPTTS 329 (434)
T ss_dssp CSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHC--------CTTEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhC--------CCCEEEEEeCcHHHHHHHHHHHhCCCCEEE
Confidence 999999999888888888999999998888988888888653 233999999999999999999999999999
Q ss_pred eeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEec-cCC
Q 007368 431 IHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN-ENN 509 (606)
Q Consensus 431 lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~-~~~ 509 (606)
+||++++.+|+++++.|++|+.+|||||+++++|||||+|++||+||+|.++++|+||+|||||.|++|.|++|++ .++
T Consensus 330 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~ 409 (434)
T 2db3_A 330 IHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKD 409 (434)
T ss_dssp ESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTC
T ss_pred EeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 567
Q ss_pred hhhHHHHHHHHHHhcCcccHHHHHH
Q 007368 510 LSLARPLAELMQESNQEVPAWLTRY 534 (606)
Q Consensus 510 ~~~~~~l~~~l~~~~q~vp~~L~~~ 534 (606)
...+.+|.++++++.|+||+||.++
T Consensus 410 ~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 410 RAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 8899999999999999999999764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-64 Score=539.15 Aligned_cols=405 Identities=62% Similarity=1.022 Sum_probs=362.3
Q ss_pred cccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhc
Q 007368 130 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQY 209 (606)
Q Consensus 130 v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~ 209 (606)
++..+...|.++.+|+++++++.+.++|...+|.+|||+|+++|+.++.+++++++||||||||++|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred c--------cCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH
Q 007368 210 V--------QRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL 281 (606)
Q Consensus 210 ~--------~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L 281 (606)
. ......+..++++|||+||++|+.|++++++++....++++..++|+.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 00001123447799999999999999999999988888999999999999988888888999999999999
Q ss_pred HHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEecc
Q 007368 282 VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGR 361 (606)
Q Consensus 282 ~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~ 361 (606)
.+++....+.+.++++||+||||++++++|...+..++..+..+.....|+++||||++..+..++..++.++..+.+..
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99999888889999999999999999999999999999876555455789999999999999999999999999888887
Q ss_pred ccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHH
Q 007368 362 VGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERE 441 (606)
Q Consensus 362 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~ 441 (606)
.......+.+.+..+....|...+.+++... ....++||||++++.++.+++.|...++.+..+||++++.+|.
T Consensus 243 ~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (417)
T 2i4i_A 243 VGSTSENITQKVVWVEESDKRSFLLDLLNAT------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316 (417)
T ss_dssp ---CCSSEEEEEEECCGGGHHHHHHHHHHTC------CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred CCCCccCceEEEEEeccHhHHHHHHHHHHhc------CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHH
Confidence 7777888888888888888888887777642 2367899999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHH
Q 007368 442 LALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQ 521 (606)
Q Consensus 442 ~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~ 521 (606)
++++.|++|+.+|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|++|.|++|+++.+...++.+.+.+.
T Consensus 317 ~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 317 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp HHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcccHHHHHHHHhccC
Q 007368 522 ESNQEVPAWLTRYASRANY 540 (606)
Q Consensus 522 ~~~q~vp~~L~~~~~~~~~ 540 (606)
+..+++|.||..++....+
T Consensus 397 ~~~~~~~~~l~~~~~~~~~ 415 (417)
T 2i4i_A 397 EAKQEVPSWLENMAYEHHY 415 (417)
T ss_dssp HTTCCCCHHHHHHHTCSCC
T ss_pred HhcCcCCHHHHHHHHhhhc
Confidence 9999999999999976543
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.9e-60 Score=505.65 Aligned_cols=372 Identities=34% Similarity=0.567 Sum_probs=338.1
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCc
Q 007368 138 PPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR 217 (606)
Q Consensus 138 p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 217 (606)
+.+..+|+++++++.+.+.+...+|.+|+|+|+++++.++++++++++++||||||++|++|++..+....
T Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------- 103 (410)
T 2j0s_A 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV--------- 103 (410)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS---------
T ss_pred ccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc---------
Confidence 34566899999999999999999999999999999999999999999999999999999999998764321
Q ss_pred ccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeE
Q 007368 218 TVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 218 ~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
..+++||++||++|+.|++++++++....++++..++++.....+...+..+++|+|+||++|.+++.+..+.+..+++
T Consensus 104 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~ 182 (410)
T 2j0s_A 104 -RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKM 182 (410)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred -CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeE
Confidence 2345999999999999999999999888889999999999999888888889999999999999999988888899999
Q ss_pred EEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEec
Q 007368 298 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVH 377 (606)
Q Consensus 298 lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 377 (606)
||+||||++++++|...+..++..+ +...|+++||||++.++..++..++.++..+.+.........+.+.+..+.
T Consensus 183 vViDEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (410)
T 2j0s_A 183 LVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVE 258 (410)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHTTS----CTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEES
T ss_pred EEEccHHHHHhhhhHHHHHHHHHhC----ccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeC
Confidence 9999999999999999999998877 677899999999999999888999999988877777777778888877776
Q ss_pred cch-hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE
Q 007368 378 ESD-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 456 (606)
Q Consensus 378 ~~~-k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 456 (606)
... |...+.+++.... ..++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 259 ~~~~k~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 331 (410)
T 2j0s_A 259 REEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 331 (410)
T ss_dssp STTHHHHHHHHHHHHHT-------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEE
T ss_pred cHHhHHHHHHHHHHhcC-------CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 554 7777777776542 56899999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHH
Q 007368 457 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAW 530 (606)
Q Consensus 457 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~ 530 (606)
||+++++|||+|++++||+||+|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.+....+++|..
T Consensus 332 ~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 332 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp ECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred ECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888888777753
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-58 Score=494.23 Aligned_cols=377 Identities=32% Similarity=0.548 Sum_probs=321.5
Q ss_pred CCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCC
Q 007368 137 VPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA 216 (606)
Q Consensus 137 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~ 216 (606)
.+....+|+++++++.+.+.+...+|.+|+++|+++|+.++.+++++++++||||||++|++|++..+....
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-------- 106 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL-------- 106 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--------
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--------
Confidence 345567899999999999999999999999999999999999999999999999999999999998765431
Q ss_pred cccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHh-cCCcEEEecHHHHHHHHHhccccccce
Q 007368 217 RTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERARVSLQMI 295 (606)
Q Consensus 217 ~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~ 295 (606)
..+++||++||++|+.|++++++++....++.+..++++.....+...+. ..++|+|+||++|.+++.+..+.+..+
T Consensus 107 --~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 107 --KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred --CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 23459999999999999999999998888899999999998888877776 678999999999999999888888999
Q ss_pred eEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEE
Q 007368 296 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEY 375 (606)
Q Consensus 296 ~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 375 (606)
++||+||||++++++|...+..++..+ +...|+++||||++..+..+...++.++..+.+.........+.+.+..
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKL----NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN 260 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTS----CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEE
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEE
Confidence 999999999999999999999999888 6778999999999999999999999999888777777777777777766
Q ss_pred eccch-hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcE
Q 007368 376 VHESD-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPI 454 (606)
Q Consensus 376 ~~~~~-k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~i 454 (606)
+.... |...+.+++... ...++||||++++.++.+++.|...++.+..+|++|++.+|..+++.|++|+.+|
T Consensus 261 ~~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 333 (414)
T 3eiq_A 261 VEREEWKLDTLCDLYETL-------TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 333 (414)
T ss_dssp CSSSTTHHHHHHHHHHSS-------CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---C
T ss_pred eChHHhHHHHHHHHHHhC-------CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 65544 555555555432 2567999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHHHHHH
Q 007368 455 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRY 534 (606)
Q Consensus 455 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L~~~ 534 (606)
||||+++++|||+|++++||+|++|.++.+|+||+||+||.|++|.|++|+++.+...++.+.+++....+++|..+.++
T Consensus 334 lv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 334 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp EEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred EEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888764
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.3e-57 Score=482.00 Aligned_cols=372 Identities=32% Similarity=0.519 Sum_probs=329.8
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCccc
Q 007368 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTV 219 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 219 (606)
+..+|+++++++.+.+.|...+|.+|+|+|+++++.+++++++++++|||+|||++|++|++..+.... .
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~----------~ 88 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL----------N 88 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS----------C
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc----------C
Confidence 456799999999999999999999999999999999999999999999999999999999998764321 2
Q ss_pred CcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEE
Q 007368 220 YPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 299 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lV 299 (606)
.+++||++||++|+.|++++++++....++++..++++.....+...+...++|+|+||++|.+++.+....+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 34599999999999999999999988888999999999988887777778899999999999999988777889999999
Q ss_pred EecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccc
Q 007368 300 LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHES 379 (606)
Q Consensus 300 lDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 379 (606)
+||||++.+..|...+..++..+ +...|+++||||++..+..++..++..+..+.+.. ......+.+.+..+...
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 243 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFL----PPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEER 243 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGG
T ss_pred EeCchHhhhhchHHHHHHHHHhC----CcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechh
Confidence 99999999888888888887776 56789999999999999999988888776654432 23445677777777777
Q ss_pred hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007368 380 DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 380 ~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
.|...+.+++... ...++||||++++.++.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||+
T Consensus 244 ~k~~~l~~~~~~~-------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 244 QKLHCLNTLFSKL-------QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp GHHHHHHHHHHHS-------CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred hHHHHHHHHHhhc-------CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 7777777766542 256899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHHHHH
Q 007368 460 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTR 533 (606)
Q Consensus 460 v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L~~ 533 (606)
++++|||+|++++||+|++|+++.+|+||+||+||.|++|.|++|+++.+...++.+.+.+....+++|.++.+
T Consensus 317 ~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred ccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999988888888888876544
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.4e-57 Score=501.44 Aligned_cols=366 Identities=31% Similarity=0.512 Sum_probs=306.4
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhHHHHHh--cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEE
Q 007368 148 DLGEELNLNIRRCKYVKPTPVQRHAIPISV--AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALI 225 (606)
Q Consensus 148 ~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~--~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Li 225 (606)
.|++.+.+.+...+|.+|||+|+++|+.++ .++++|++||||||||++|++|++..+...... ....+++||
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~------~~~~~~~li 151 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD------SQYMVKAVI 151 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS------STTSCCEEE
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc------ccCCeeEEE
Confidence 399999999999999999999999999999 678999999999999999999999998865422 123456999
Q ss_pred EccchHHHHHHHHHHHHhhhc----CCcEEEEEECCCChHHHHHHH-hcCCcEEEecHHHHHHHHHhc-cccccceeEEE
Q 007368 226 LAPTRELSSQIHDEAKKFSYQ----TGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERA-RVSLQMIRYLA 299 (606)
Q Consensus 226 l~Ptr~La~Qi~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l-~~~~~Ilv~Tp~~L~~~l~~~-~~~l~~~~~lV 299 (606)
|+||++||.|++++++++... ..+.+..++++.....+...+ ..+++|+|+||++|++++.+. ...+..+++||
T Consensus 152 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 231 (563)
T 3i5x_A 152 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKV 231 (563)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred EcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEE
Confidence 999999999999999997532 346688889999888877776 447999999999999998775 33688899999
Q ss_pred EecccccccCCCHHHHHHHHHhcC---CCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEecccc----CccCceeEE
Q 007368 300 LDEADRMLDMGFEPQIRKIVQQMD---MPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVG----SSTDLIVQR 372 (606)
Q Consensus 300 lDEah~~~~~gf~~~i~~i~~~l~---~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~----~~~~~i~~~ 372 (606)
|||||+|++++|.+.+..|+..+. .......|+++||||++..+..++..++.++..+.+.... .....+.+.
T Consensus 232 iDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (563)
T 3i5x_A 232 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 311 (563)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred EeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceE
Confidence 999999999999999999887662 2234578999999999999999999999887665553322 233445555
Q ss_pred EEEecc-chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC---CCCcEEeeCccCHHHHHHHHHhcc
Q 007368 373 VEYVHE-SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQERELALRSFK 448 (606)
Q Consensus 373 ~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~ 448 (606)
+..... ..+...+++.+...... .....++||||++++.|+.+++.|... ++.+..+|++|++.+|..+++.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~ 389 (563)
T 3i5x_A 312 VVISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK 389 (563)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHH
T ss_pred EEECchhHhhHHHHHHHHHHHHhh--cCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHh
Confidence 555443 23334444444443332 123678999999999999999999876 899999999999999999999999
Q ss_pred CCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHH
Q 007368 449 SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQ 521 (606)
Q Consensus 449 ~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~ 521 (606)
+|+.+|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+...++.|.+.+.
T Consensus 390 ~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 390 KDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred cCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999888888876644
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.4e-55 Score=467.66 Aligned_cols=369 Identities=31% Similarity=0.510 Sum_probs=323.5
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007368 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
.+|+++++++.+.+.|...+|.+|+|+|+++++.++.++++++++|||+|||++|++|++..+.... ..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----------~~~ 77 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----------GQV 77 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT----------TCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC----------CCe
Confidence 4699999999999999999999999999999999999999999999999999999999987764321 134
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcC-CcEEEEEECCCChHHHHHHHhcC-CcEEEecHHHHHHHHHhccccccceeEEE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQT-GVKVVVAYGGAPINQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLA 299 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lV 299 (606)
++||++||++|+.||+++++++.... ++++..++|+.....+...+..+ ++|+|+||++|..++.+....+.++++||
T Consensus 78 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vV 157 (391)
T 1xti_A 78 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 157 (391)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEE
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEE
Confidence 59999999999999999999997654 78999999998887777666554 79999999999999988888899999999
Q ss_pred Eeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEecccc-CccCceeEEEEEec
Q 007368 300 LDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVG-SSTDLIVQRVEYVH 377 (606)
Q Consensus 300 lDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~-~~~~~i~~~~~~~~ 377 (606)
+||||++.+ .+|...+..++..+ +...|+++||||++..+..++..++.++..+.+.... .....+.+.+..+.
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK 233 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTS----CSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC
T ss_pred EeCHHHHhhccchHHHHHHHHhhC----CCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC
Confidence 999999987 46778888887766 5678999999999999999999999888777665433 33456677777777
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEE
Q 007368 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 457 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 457 (606)
...|...+.+++... ...++||||++++.++.+++.|...++.+..+|+++++.+|.++++.|++|+.+||||
T Consensus 234 ~~~~~~~l~~~l~~~-------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 306 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 306 (391)
T ss_dssp GGGHHHHHHHHHHHS-------CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred chhHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 788888887777653 2678999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccC-ChhhHHHHHHHHHHhcCcccHHH
Q 007368 458 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN-NLSLARPLAELMQESNQEVPAWL 531 (606)
Q Consensus 458 T~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~-~~~~~~~l~~~l~~~~q~vp~~L 531 (606)
|+++++|||+|++++||+|++|+++.+|+||+||++|.|++|.|++|+++. +..+++.+.+.+....+++|..+
T Consensus 307 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 307 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp SCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred CChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 999999999999999999999999999999999999999999999999875 45667778888877777887653
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.1e-55 Score=490.15 Aligned_cols=365 Identities=32% Similarity=0.516 Sum_probs=306.2
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhHHHHHh--cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEE
Q 007368 148 DLGEELNLNIRRCKYVKPTPVQRHAIPISV--AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALI 225 (606)
Q Consensus 148 ~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~--~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Li 225 (606)
.|++.+.+.+..++|..|||+|+++|+.++ .++++|++||||+|||++|++|++..+...... ....+++||
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~------~~~~~~~lv 100 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD------SQYMVKAVI 100 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS------STTSCCEEE
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc------ccCCCeEEE
Confidence 399999999999999999999999999999 779999999999999999999999988765421 123457999
Q ss_pred EccchHHHHHHHHHHHHhhh----cCCcEEEEEECCCChHHHHHHHhc-CCcEEEecHHHHHHHHHhc-cccccceeEEE
Q 007368 226 LAPTRELSSQIHDEAKKFSY----QTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERA-RVSLQMIRYLA 299 (606)
Q Consensus 226 l~Ptr~La~Qi~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~-~~~l~~~~~lV 299 (606)
|+||++|+.|++++++++.. ...+.+..++++.....+...+.. +++|+|+||++|++++.+. ...+..+++||
T Consensus 101 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lV 180 (579)
T 3sqw_A 101 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKV 180 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred EcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEE
Confidence 99999999999999999863 245678888999988888777754 7999999999999999875 44688999999
Q ss_pred EecccccccCCCHHHHHHHHHhcC---CCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEecccc----CccCceeEE
Q 007368 300 LDEADRMLDMGFEPQIRKIVQQMD---MPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVG----SSTDLIVQR 372 (606)
Q Consensus 300 lDEah~~~~~gf~~~i~~i~~~l~---~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~----~~~~~i~~~ 372 (606)
|||||+|++++|.+.+..|+..+. ...+..+|+++||||++..+..++..++.++..+.+.... .....+.+.
T Consensus 181 iDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (579)
T 3sqw_A 181 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 260 (579)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred EEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceE
Confidence 999999999999999998887762 2223477999999999999999999999887666554322 233445565
Q ss_pred EEEecc-chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC---CCCcEEeeCccCHHHHHHHHHhcc
Q 007368 373 VEYVHE-SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQERELALRSFK 448 (606)
Q Consensus 373 ~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~ 448 (606)
+..... ..+...+++.+...... .....++||||++++.|+.+++.|... ++.+..+||+|++.+|..+++.|+
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~ 338 (579)
T 3sqw_A 261 VVISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK 338 (579)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEecchhhhHHHHHHHHHHHHhh--cCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhh
Confidence 555543 23333444444443332 123678999999999999999999876 899999999999999999999999
Q ss_pred CCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHH
Q 007368 449 SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELM 520 (606)
Q Consensus 449 ~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l 520 (606)
+|+.+|||||+++++|||+|+|++||+|++|.+++.|+||+|||||.|++|.|++|+++.+..+++.|.+..
T Consensus 339 ~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 339 KDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999888777775543
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.1e-57 Score=479.07 Aligned_cols=375 Identities=33% Similarity=0.547 Sum_probs=186.8
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCc
Q 007368 138 PPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR 217 (606)
Q Consensus 138 p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 217 (606)
.++..+|+++++++.+.+.+...+|.+|+|+|+++++.++.++++++++|||+|||++|++|++..+....
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------- 87 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------- 87 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC---------
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC---------
Confidence 34556799999999999999999999999999999999999999999999999999999999998765431
Q ss_pred ccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeE
Q 007368 218 TVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 218 ~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
..+++||++||++|+.|++++++++....++++..++|+.....+...+. .++|+|+||++|.+.+.+....+.++++
T Consensus 88 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 165 (394)
T 1fuu_A 88 -KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKM 165 (394)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcE
Confidence 23469999999999999999999998888899999999988776665554 5899999999999999888778899999
Q ss_pred EEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEec
Q 007368 298 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVH 377 (606)
Q Consensus 298 lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 377 (606)
||+||||++.+.+|...+..++..+ +...|+++||||++..+..+...++.++..+.+.........+.+.+..+.
T Consensus 166 vIiDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T 1fuu_A 166 FILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVE 241 (394)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------
T ss_pred EEEEChHHhhCCCcHHHHHHHHHhC----CCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcC
Confidence 9999999999999999999999888 667899999999999999999999998887777655555555555554444
Q ss_pred cch-hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE
Q 007368 378 ESD-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 456 (606)
Q Consensus 378 ~~~-k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 456 (606)
... +...+.+++... ...++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 242 ~~~~~~~~l~~~~~~~-------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 314 (394)
T 1fuu_A 242 EEEYKYECLTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILI 314 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHhcC-------CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 333 555555555432 256799999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcccHHHHHH
Q 007368 457 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRY 534 (606)
Q Consensus 457 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~vp~~L~~~ 534 (606)
||+++++|||+|++++||+|++|.++.+|+||+||++|.|++|.|++|+++.+...++.+.+.+.....++|..+.++
T Consensus 315 ~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 315 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998888888877654
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1e-54 Score=464.21 Aligned_cols=367 Identities=30% Similarity=0.486 Sum_probs=315.8
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCC
Q 007368 139 PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA 216 (606)
Q Consensus 139 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~ 216 (606)
.+..+|+++++++.+.+.+...+|.+|+|+|.++|+.++.+ ++++++||||+|||++|++|++..+....
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-------- 93 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-------- 93 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--------
Confidence 45678999999999999999999999999999999999997 99999999999999999999998775432
Q ss_pred cccCcEEEEEccchHHHHHHHHHHHHhhhc-CCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh-ccccccc
Q 007368 217 RTVYPLALILAPTRELSSQIHDEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQM 294 (606)
Q Consensus 217 ~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~-~~~~l~~ 294 (606)
..+++||++||++|+.|+++.++++... .++.+....++....... ...++|+|+||++|.+++.+ ..+.+.+
T Consensus 94 --~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~ 168 (412)
T 3fht_A 94 --KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 168 (412)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGG
T ss_pred --CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhh
Confidence 2346999999999999999999998754 367777777776533221 33579999999999999966 4557889
Q ss_pred eeEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEE
Q 007368 295 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRV 373 (606)
Q Consensus 295 ~~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~ 373 (606)
+++||+||||++++ .++...+..+...+ +...|+++||||++..+..++..++.++..+.+.........+.+.+
T Consensus 169 ~~~iViDEah~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 169 IKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp CCEEEEETHHHHHSTTTTHHHHHHHHHTS----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEE
T ss_pred CcEEEEeCHHHHhhcCCcHHHHHHHHhhC----CCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEE
Confidence 99999999999987 67888888888877 56789999999999999999999999999888877777777788777
Q ss_pred EEecc-chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCC
Q 007368 374 EYVHE-SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 374 ~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
..+.. ..+...+.+++.... ..++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~-------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 317 (412)
T 3fht_A 245 VLCSSRDEKFQALCNLYGAIT-------IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 317 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHHS-------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred EEcCChHHHHHHHHHHHhhcC-------CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCC
Confidence 66654 345555666655432 5689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEecCC------CCHhHHHHHhhccccCCCcceEEEEeccCC-hhhHHHHHHHHHHhcC
Q 007368 453 PILVATDVAARGLDIPHVAHVVNFDLP------NDIDDYVHRIGRTGRAGKSGLATAFFNENN-LSLARPLAELMQESNQ 525 (606)
Q Consensus 453 ~iLVaT~v~~~GlDip~v~~VI~~d~p------~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~-~~~~~~l~~~l~~~~q 525 (606)
+|||||+++++|||+|++++||+||+| .+..+|+||+||+||.|+.|.|++|++..+ ...++.+.+.+....+
T Consensus 318 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~ 397 (412)
T 3fht_A 318 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIE 397 (412)
T ss_dssp SEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCE
T ss_pred cEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccc
Confidence 999999999999999999999999999 467899999999999999999999998754 6777888888877666
Q ss_pred cccH
Q 007368 526 EVPA 529 (606)
Q Consensus 526 ~vp~ 529 (606)
+++.
T Consensus 398 ~~~~ 401 (412)
T 3fht_A 398 RLDT 401 (412)
T ss_dssp EC--
T ss_pred cCCC
Confidence 6653
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-54 Score=455.18 Aligned_cols=358 Identities=37% Similarity=0.611 Sum_probs=319.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007368 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~-~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
.+|+++++++.+.+.|+..+|.+|+|+|+++++.++++ +++++++|||||||++|++|++..+... .+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----------~~ 74 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----------NG 74 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----------SS
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----------CC
Confidence 46999999999999999999999999999999999988 7999999999999999999998765432 13
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
+++||++||++|+.|++++++++....++++..++++.....+...+. .++|+|+||++|.+++......+.++++||+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 459999999999999999999998878889999999998877766665 6899999999999999888778899999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch
Q 007368 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
||||++.+++|...+..++..+ +...++++||||++..+..++..++.++.++.... ...+.+.+..+....
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 225 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNAC----NKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENE 225 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTS----CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGG
T ss_pred eCchHhhhhchHHHHHHHHHhC----CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHH
Confidence 9999999999999999998877 56789999999999999999999988877665432 235666777777777
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc
Q 007368 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 460 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v 460 (606)
+...+.+++. ....++||||++++.++.+++.|+..++.+..+|+++++.+|.++++.|++|+.+|||||++
T Consensus 226 ~~~~l~~~l~--------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 297 (367)
T 1hv8_A 226 RFEALCRLLK--------NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV 297 (367)
T ss_dssp HHHHHHHHHC--------STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred HHHHHHHHHh--------cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh
Confidence 7777766664 23677999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCcc
Q 007368 461 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEV 527 (606)
Q Consensus 461 ~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~v 527 (606)
+++|+|+|++++||++++|+++.+|+||+||++|.|++|.|++|+++.+...+..+.+.+....+++
T Consensus 298 ~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 298 MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 9999999999999999999999999999999999999999999999999998888888887665554
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.5e-54 Score=458.07 Aligned_cols=357 Identities=33% Similarity=0.541 Sum_probs=306.1
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCc
Q 007368 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR 217 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 217 (606)
...+|+++++++.+.+.+...+|.+|+|+|+++++.++.+ +++++++|||+|||++|++|++..+....
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------- 73 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------- 73 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC---------
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC---------
Confidence 3568999999999999999999999999999999999998 99999999999999999999998765332
Q ss_pred ccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeE
Q 007368 218 TVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 218 ~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
..+++||++||++|+.|++++++++....++.+...+++..... ....++|+|+||++|.+++.+....+.++++
T Consensus 74 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 148 (395)
T 3pey_A 74 -ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKI 148 (395)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCE
T ss_pred -CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCE
Confidence 23459999999999999999999998877888888777654322 1235899999999999999888888999999
Q ss_pred EEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEe
Q 007368 298 LALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYV 376 (606)
Q Consensus 298 lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 376 (606)
||+||||++.+ .++...+..+...+ +...|+++||||++..+..+...++.++..+.+.........+.+.+..+
T Consensus 149 iIiDEah~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 149 FVLDEADNMLDQQGLGDQCIRVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224 (395)
T ss_dssp EEEETHHHHHHSTTHHHHHHHHHHTS----CTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEEC
T ss_pred EEEEChhhhcCccccHHHHHHHHHhC----CCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEc
Confidence 99999999988 67888888888877 66789999999999999999999999888877776666667777766665
Q ss_pred ccc-hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEE
Q 007368 377 HES-DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPIL 455 (606)
Q Consensus 377 ~~~-~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 455 (606)
... .+...+.+++... ...++||||++++.++.+++.|+..++.+..+|++|++.+|.++++.|++|+.+||
T Consensus 225 ~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 297 (395)
T 3pey_A 225 KNEADKFDVLTELYGLM-------TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 297 (395)
T ss_dssp SSHHHHHHHHHHHHTTT-------TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEE
T ss_pred CchHHHHHHHHHHHHhc-------cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEE
Confidence 433 3433333333221 36789999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEecCCC------CHhHHHHHhhccccCCCcceEEEEeccCC-hhhHHHHHHHHH
Q 007368 456 VATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNENN-LSLARPLAELMQ 521 (606)
Q Consensus 456 VaT~v~~~GlDip~v~~VI~~d~p~------s~~~y~QRiGR~gR~g~~G~~~~~~~~~~-~~~~~~l~~~l~ 521 (606)
|||+++++|||+|++++||+||+|+ ++.+|+||+||+||.|++|.|++|++..+ ...++.+.+.+.
T Consensus 298 v~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 298 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999999999999999 99999999999999999999999998644 445555555554
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.2e-56 Score=483.24 Aligned_cols=365 Identities=30% Similarity=0.490 Sum_probs=174.4
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCc
Q 007368 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR 217 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 217 (606)
+..+|++++|++.+.+.|..++|.+|+|+|+++|+.++.+ +++|++|+||||||++|++|++..+....
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~--------- 160 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------- 160 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS---------
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC---------
Confidence 4668999999999999999999999999999999999987 99999999999999999999997765432
Q ss_pred ccCcEEEEEccchHHHHHHHHHHHHhhhc-CCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh-ccccccce
Q 007368 218 TVYPLALILAPTRELSSQIHDEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMI 295 (606)
Q Consensus 218 ~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~-~~~~l~~~ 295 (606)
..+++|||+||++|+.|+++.++++... ..+.+.+++++....... ...++|+|+||++|++++.+ ..+.+.++
T Consensus 161 -~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 161 -KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred -CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 2356999999999999999999998754 356777777766433211 23579999999999999966 34578999
Q ss_pred eEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEE
Q 007368 296 RYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVE 374 (606)
Q Consensus 296 ~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 374 (606)
++|||||||+|++ .+|...+..++..+ +..+|+++||||++..+..++..++.++..+.+.........+.+.+.
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 312 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 312 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTS----CTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhC----CccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEE
Confidence 9999999999997 57888888887776 677899999999999999999999999988888777666777777766
Q ss_pred Eecc-chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCc
Q 007368 375 YVHE-SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP 453 (606)
Q Consensus 375 ~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 453 (606)
.+.. ..+...+..++.... ..++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 313 ~~~~~~~~~~~l~~~~~~~~-------~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~ 385 (479)
T 3fmp_B 313 LCSSRDEKFQALCNLYGAIT-------IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 385 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCHHHHHHHHHHHHhhcc-------CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc
Confidence 6554 445555555554432 56799999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEecCCC------CHhHHHHHhhccccCCCcceEEEEeccCC-hhhHHHHHHHHHHhcCc
Q 007368 454 ILVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNENN-LSLARPLAELMQESNQE 526 (606)
Q Consensus 454 iLVaT~v~~~GlDip~v~~VI~~d~p~------s~~~y~QRiGR~gR~g~~G~~~~~~~~~~-~~~~~~l~~~l~~~~q~ 526 (606)
|||||+++++|||+|+|++||+||+|. +..+|+||+|||||.|+.|.|++|++..+ ...++.+.+.+....++
T Consensus 386 iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~ 465 (479)
T 3fmp_B 386 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIER 465 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceE
Confidence 999999999999999999999999994 66899999999999999999999998654 67777777777666555
Q ss_pred cc
Q 007368 527 VP 528 (606)
Q Consensus 527 vp 528 (606)
++
T Consensus 466 l~ 467 (479)
T 3fmp_B 466 LD 467 (479)
T ss_dssp --
T ss_pred CC
Confidence 54
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.2e-52 Score=429.83 Aligned_cols=335 Identities=36% Similarity=0.590 Sum_probs=288.2
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEcc
Q 007368 149 LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAP 228 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~P 228 (606)
|++.+.+.++.++|.+|+|+|+++++.+++++++++++|||+|||++|++|++.. ++++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------------~~~~liv~P 64 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------------GMKSLVVTP 64 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------------TCCEEEECS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------------cCCEEEEeC
Confidence 5788999999999999999999999999999999999999999999999998753 124999999
Q ss_pred chHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEeccccccc
Q 007368 229 TRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 308 (606)
Q Consensus 229 tr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~ 308 (606)
+++|+.|++++++++....++++..++++.....+...+.. ++|+|+||++|.+++....+.+.++++||+||||++.+
T Consensus 65 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 65 TRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 99999999999999988888999999999887777666654 89999999999999988777889999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHH
Q 007368 309 MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDL 388 (606)
Q Consensus 309 ~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 388 (606)
++|...+..++..+ +...++++||||++..+......++.++..+... .....+.+.+..+....+ ..++.
T Consensus 144 ~~~~~~~~~~~~~~----~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~ 214 (337)
T 2z0m_A 144 MGFIDDIKIILAQT----SNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQA 214 (337)
T ss_dssp TTCHHHHHHHHHHC----TTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH--HHHHH
T ss_pred cccHHHHHHHHhhC----CcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH--HHHHH
Confidence 99999999999887 5678899999999999999999999887765432 233445555555443332 22233
Q ss_pred HHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCC
Q 007368 389 LHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP 468 (606)
Q Consensus 389 l~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip 468 (606)
+.. ....++||||+++++++.+++.|. .+..+|+++++.+|.++++.|++|+.+|||||+++++|||+|
T Consensus 215 ~~~-------~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~ 283 (337)
T 2z0m_A 215 LRE-------NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIP 283 (337)
T ss_dssp HHT-------CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCC
T ss_pred HHh-------CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCcc
Confidence 321 236789999999999999998886 578999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHH
Q 007368 469 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQ 521 (606)
Q Consensus 469 ~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~ 521 (606)
++++||+|++|+++.+|+||+||+||.|++|.|++|+. .+....+.+.+.+.
T Consensus 284 ~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 284 LVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999 77777777766654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.8e-50 Score=444.32 Aligned_cols=343 Identities=15% Similarity=0.275 Sum_probs=273.3
Q ss_pred ccCCCCHHHHHHHHh-CCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEE
Q 007368 145 AEIDLGEELNLNIRR-CKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLA 223 (606)
Q Consensus 145 ~~~~l~~~l~~~l~~-~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~ 223 (606)
.++++++.+.+.|+. ++|..|+|+|+++|+.+++++|+|+++|||+|||++|++|++.. ...+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------------~g~~ 87 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------------DGFT 87 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----------------SSEE
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----------------CCcE
Confidence 457888999999998 69999999999999999999999999999999999999999742 1359
Q ss_pred EEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---H---hcCCcEEEecHHHHH------HHHHhcccc
Q 007368 224 LILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---L---ERGVDILVATPGRLV------DLLERARVS 291 (606)
Q Consensus 224 Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~~Ilv~Tp~~L~------~~l~~~~~~ 291 (606)
|||+|+++|+.|+.+.++++ ++++..++++....++... + ...++|+|+||++|. +++.. ...
T Consensus 88 lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~ 162 (591)
T 2v1x_A 88 LVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYE 162 (591)
T ss_dssp EEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHH
T ss_pred EEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhh
Confidence 99999999999999999987 7888888888876554332 2 346899999999874 23332 345
Q ss_pred ccceeEEEEecccccccCC--CHHHHHH--HHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccC
Q 007368 292 LQMIRYLALDEADRMLDMG--FEPQIRK--IVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTD 367 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~g--f~~~i~~--i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~ 367 (606)
+..+++|||||||++.+++ |.+.+.. ++... .+..++++||||++..+...+..++.......+.. .....
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~----~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~ 237 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ----FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRP 237 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH----CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCT
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHh----CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCc
Confidence 7889999999999999988 8777765 33333 24578999999999998888877776432222211 12223
Q ss_pred ceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhc
Q 007368 368 LIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSF 447 (606)
Q Consensus 368 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F 447 (606)
++...+ ..........++.+...+.. .....++||||++++.++.+++.|...++.+..+|++|++.+|..+++.|
T Consensus 238 nl~~~v--~~~~~~~~~~~~~l~~~l~~--~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F 313 (591)
T 2v1x_A 238 NLYYEV--RQKPSNTEDFIEDIVKLING--RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKW 313 (591)
T ss_dssp TEEEEE--EECCSSHHHHHHHHHHHHTT--TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEE--EeCCCcHHHHHHHHHHHHHH--hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH
Confidence 333222 22222222223333333322 11367899999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHH
Q 007368 448 KSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLA 517 (606)
Q Consensus 448 ~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~ 517 (606)
+.|+.+|||||+++++|||+|+|++||+|++|.+++.|+||+|||||.|++|.|++||+..|...+..++
T Consensus 314 ~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 314 SANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp HTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred HcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988776655543
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-52 Score=453.55 Aligned_cols=369 Identities=28% Similarity=0.453 Sum_probs=262.8
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCC
Q 007368 138 PPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 215 (606)
Q Consensus 138 p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~ 215 (606)
|.....|...++++.+.+.+...+|..|+++|+++|+.++++ +++|++++||||||++|++|++..+....
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~------- 187 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV------- 187 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-------
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC-------
Confidence 334445666778899999999999999999999999999998 99999999999999999999998775432
Q ss_pred CcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccce
Q 007368 216 ARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI 295 (606)
Q Consensus 216 ~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~ 295 (606)
..+++|||+|+++|+.|++++++++.....+.+...+++.... .....++|+|+||++|.+++.+..+.+.++
T Consensus 188 ---~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 188 ---PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp ---CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred ---CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 2345999999999999999999999877677766655554322 223368999999999999999888889999
Q ss_pred eEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEE
Q 007368 296 RYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVE 374 (606)
Q Consensus 296 ~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 374 (606)
++||+||||++.+ .++...+..+...+ +...|+++||||++..+..+...++.++..+.+.........+.+.+.
T Consensus 261 ~lIIiDEaH~~~~~~~~~~~~~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 336 (508)
T 3fho_A 261 KVFVLDEADNMLDQQGLGDQSMRIKHLL----PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYM 336 (508)
T ss_dssp CEEEECCHHHHTTC--CHHHHHHHHHHS----CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEE
T ss_pred CEEEEechhhhcccCCcHHHHHHHHHhC----CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEE
Confidence 9999999999987 67899999999888 567899999999999999999999998887776655555555665555
Q ss_pred Eec-cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCc
Q 007368 375 YVH-ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP 453 (606)
Q Consensus 375 ~~~-~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 453 (606)
.+. ...+...+.+++... ...++||||+++++++.+++.|...++.+..+|+++++.+|+.+++.|++|+.+
T Consensus 337 ~~~~~~~k~~~l~~ll~~~-------~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~ 409 (508)
T 3fho_A 337 DCQSEEHKYNVLVELYGLL-------TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK 409 (508)
T ss_dssp EC--CHHHHHHHHHHHC----------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC
T ss_pred ECCchHHHHHHHHHHHHhc-------CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe
Confidence 543 344555555554432 256899999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEecCC------CCHhHHHHHhhccccCCCcceEEEEec-cCChhhHHHHHHHHHHhcCc
Q 007368 454 ILVATDVAARGLDIPHVAHVVNFDLP------NDIDDYVHRIGRTGRAGKSGLATAFFN-ENNLSLARPLAELMQESNQE 526 (606)
Q Consensus 454 iLVaT~v~~~GlDip~v~~VI~~d~p------~s~~~y~QRiGR~gR~g~~G~~~~~~~-~~~~~~~~~l~~~l~~~~q~ 526 (606)
|||||+++++|||+|++++||++|+| .++.+|+||+||+||.|++|.|++|++ ..+...++.+.+.+....++
T Consensus 410 VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~ 489 (508)
T 3fho_A 410 VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITR 489 (508)
T ss_dssp CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-
T ss_pred EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCccc
Confidence 99999999999999999999999999 889999999999999999999999998 46677888888888877777
Q ss_pred ccHHH
Q 007368 527 VPAWL 531 (606)
Q Consensus 527 vp~~L 531 (606)
+|..-
T Consensus 490 l~~~~ 494 (508)
T 3fho_A 490 VPTDD 494 (508)
T ss_dssp -----
T ss_pred CCCcc
Confidence 77543
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.6e-50 Score=429.21 Aligned_cols=330 Identities=23% Similarity=0.280 Sum_probs=267.7
Q ss_pred HHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHH
Q 007368 153 LNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTREL 232 (606)
Q Consensus 153 l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~L 232 (606)
+.+.+++....+|+|+|+++++.++++++++++||||||||++|++|++..+.. ++++|||+||++|
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-------------~~~~lil~Pt~~L 76 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTVTL 76 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-------------TCCEEEEESSHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-------------CCEEEEEECCHHH
Confidence 344454433338999999999999999999999999999999999998765511 2459999999999
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEECCCCh---HHHHHHHhcC-CcEEEecHHHHHHHHHhccccccceeEEEEecccccc-
Q 007368 233 SSQIHDEAKKFSYQTGVKVVVAYGGAPI---NQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRML- 307 (606)
Q Consensus 233 a~Qi~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~- 307 (606)
+.|+++.++++.. .++++..++|+.+. ..++..+..+ ++|+|+||++|.+++.. +.+.++++||+||||++.
T Consensus 77 ~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~ 153 (414)
T 3oiy_A 77 VKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLK 153 (414)
T ss_dssp HHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHH
T ss_pred HHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhh
Confidence 9999999999887 78999999999987 5566777666 99999999999988875 567899999999998654
Q ss_pred ---------c-CCCHHH-HHHHHHhcC-------CCCCCCceEEEEecc-ChHHHH-HHHHHhhcCcEEEEeccccCccC
Q 007368 308 ---------D-MGFEPQ-IRKIVQQMD-------MPPPGVRQTMLFSAT-FPKEIQ-KLASDFLANYVFLAVGRVGSSTD 367 (606)
Q Consensus 308 ---------~-~gf~~~-i~~i~~~l~-------~~~~~~~q~ll~SAT-~~~~i~-~l~~~~l~~~~~~~~~~~~~~~~ 367 (606)
+ ++|.++ +..++..+. .......|+++|||| +|..+. .+...++. +.+........
T Consensus 154 ~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 229 (414)
T 3oiy_A 154 ASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVAR 229 (414)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCC
T ss_pred ccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccc
Confidence 4 788888 788887762 111267899999999 665544 33333332 22333334445
Q ss_pred ceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcE-EeeCccCHHHHHHHHHh
Q 007368 368 LIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPAT-TIHGDRTQQERELALRS 446 (606)
Q Consensus 368 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~l~~ 446 (606)
.+.+.+..+ .+...+.+++... ..++||||++++.++.+++.|+..++.+. .+||+ +|+ ++.
T Consensus 230 ~i~~~~~~~---~~~~~l~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~ 292 (414)
T 3oiy_A 230 NITHVRISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FED 292 (414)
T ss_dssp SEEEEEESS---CCHHHHHHHHHHH--------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHH
T ss_pred cchheeecc---CHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHH
Confidence 566655433 5666677777662 46799999999999999999999999998 99995 444 999
Q ss_pred ccCCCCcEEEE----ccccccCCCCCC-ccEEEEecCC--CCHhHHHHHhhccccCC----CcceEEEEeccCChhhHHH
Q 007368 447 FKSGKTPILVA----TDVAARGLDIPH-VAHVVNFDLP--NDIDDYVHRIGRTGRAG----KSGLATAFFNENNLSLARP 515 (606)
Q Consensus 447 F~~g~~~iLVa----T~v~~~GlDip~-v~~VI~~d~p--~s~~~y~QRiGR~gR~g----~~G~~~~~~~~~~~~~~~~ 515 (606)
|++|+++|||| |+++++|||+|+ |++||+||+| .++.+|+||+||+||.| ++|.|++|+ .+...+..
T Consensus 293 f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~ 370 (414)
T 3oiy_A 293 FKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFES 370 (414)
T ss_dssp HHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHH
T ss_pred HhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHH
Confidence 99999999999 999999999999 9999999999 99999999999999987 589999999 67777888
Q ss_pred HHHHHH
Q 007368 516 LAELMQ 521 (606)
Q Consensus 516 l~~~l~ 521 (606)
+.+.+.
T Consensus 371 l~~~~~ 376 (414)
T 3oiy_A 371 LKTRLL 376 (414)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888777
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.3e-49 Score=434.43 Aligned_cols=343 Identities=21% Similarity=0.293 Sum_probs=278.0
Q ss_pred CccccCCCCHHHHHHHHh-CCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007368 142 NTFAEIDLGEELNLNIRR-CKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~-~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
.+|++++|++.+.+.|+. ++|..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. .
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~------------- 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---N------------- 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---S-------------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---C-------------
Confidence 468999999999999998 89999999999999999999999999999999999999998742 1
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHH---HH-hcCCcEEEecHHHHHHHHHhcccccccee
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLR---EL-ERGVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
..+|||+|+++|+.|+.+.++++ ++.+..+.++........ .+ ...++|+|+||++|........+...+++
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 24999999999999999999886 678888888776554332 22 33589999999999643333334457899
Q ss_pred EEEEecccccccCC--CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhh--cCcEEEEeccccCccCceeEE
Q 007368 297 YLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFL--ANYVFLAVGRVGSSTDLIVQR 372 (606)
Q Consensus 297 ~lVlDEah~~~~~g--f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l--~~~~~~~~~~~~~~~~~i~~~ 372 (606)
+||+||||++.+++ |.+.+..+...+.. .+..++++||||++..+...+...+ .++..+.. . ....++ .
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~--~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~--~~r~~l--~ 214 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQR--FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-S--FDRPNI--R 214 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHH--CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-C--CCCTTE--E
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHh--CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-C--CCCCce--E
Confidence 99999999999887 77776655322211 1347899999999887765444444 34433321 1 112233 2
Q ss_pred EEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCC
Q 007368 373 VEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 373 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
+.......+...+.+++... ...++||||++++.++.+++.|...++.+..+|++|++.+|+.+++.|++|+.
T Consensus 215 ~~v~~~~~~~~~l~~~l~~~-------~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 287 (523)
T 1oyw_A 215 YMLMEKFKPLDQLMRYVQEQ-------RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDL 287 (523)
T ss_dssp EEEEECSSHHHHHHHHHHHT-------TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred EEEEeCCCHHHHHHHHHHhc-------CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 34444556666677766543 25679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHH
Q 007368 453 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAE 518 (606)
Q Consensus 453 ~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~ 518 (606)
+|||||+++++|||+|+|++||+|++|.+++.|+||+||+||.|++|.|++|+++.|...++.+.+
T Consensus 288 ~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 288 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp SEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred eEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999888777666554
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.7e-48 Score=428.91 Aligned_cols=327 Identities=18% Similarity=0.223 Sum_probs=258.7
Q ss_pred hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007368 159 RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
..+| .|||+|..++|.+++|+ |++|+||+|||++|++|++...+.. +.++||+||++||.|+++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g-------------~~vlVltptreLA~qd~e 142 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG-------------KGVHVVTVNEYLASRDAE 142 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC-------------CCEEEEeCCHHHHHHHHH
Confidence 4689 99999999999999998 9999999999999999998544321 249999999999999999
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhc------cccccceeEEEEecccccc-cCC
Q 007368 239 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG 310 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~g 310 (606)
++..|....++++.+++||.+... +.+..+|+|+|+||++| +++|... .+.+..+.++||||||+|+ |++
T Consensus 143 ~~~~l~~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 143 QMGKIFEFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHHHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 999999999999999999987543 34455799999999999 6776543 3567889999999999998 775
Q ss_pred ---------------CHHHHHHHHHhcCC-----CCCCCceEE-----------------EEeccChH---HHHHHH--H
Q 007368 311 ---------------FEPQIRKIVQQMDM-----PPPGVRQTM-----------------LFSATFPK---EIQKLA--S 348 (606)
Q Consensus 311 ---------------f~~~i~~i~~~l~~-----~~~~~~q~l-----------------l~SAT~~~---~i~~l~--~ 348 (606)
|..++..|+..+.. ..++.+|++ +||||++. .+...+ .
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 66788889888731 012568888 99999874 333332 2
Q ss_pred Hhhc---CcEEE-----Eecc-----------------------------ccCccCcee---------------------
Q 007368 349 DFLA---NYVFL-----AVGR-----------------------------VGSSTDLIV--------------------- 370 (606)
Q Consensus 349 ~~l~---~~~~~-----~~~~-----------------------------~~~~~~~i~--------------------- 370 (606)
.++. +|++. .++. .......|.
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 2221 22210 0100 000000000
Q ss_pred --------------------------EEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC
Q 007368 371 --------------------------QRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN 424 (606)
Q Consensus 371 --------------------------~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~ 424 (606)
+.+.++....|...+.+.+...... ..++||||+|++.++.|+..|...
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~-----~~pvLVft~s~~~se~Ls~~L~~~ 455 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMT-----GQPVLVGTVAVETSELISKLLKNK 455 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHH-----TCCEEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHHHHHHHHC
Confidence 1134556677888888877664322 567999999999999999999999
Q ss_pred CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCC--------CccEEEEecCCCCHhHHHHHhhccccCC
Q 007368 425 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP--------HVAHVVNFDLPNDIDDYVHRIGRTGRAG 496 (606)
Q Consensus 425 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip--------~v~~VI~~d~p~s~~~y~QRiGR~gR~g 496 (606)
++++..||+++.+.+|+.+.+.|+.| .||||||+|+||+||+ ++.|||||++|.+.+.|+||+|||||+|
T Consensus 456 gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG 533 (844)
T 1tf5_A 456 GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG 533 (844)
T ss_dssp TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG
T ss_pred CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC
Confidence 99999999999999988777777766 6999999999999999 7889999999999999999999999999
Q ss_pred CcceEEEEeccCCh
Q 007368 497 KSGLATAFFNENNL 510 (606)
Q Consensus 497 ~~G~~~~~~~~~~~ 510 (606)
.+|.+++|++.+|.
T Consensus 534 ~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 534 DPGITQFYLSMEDE 547 (844)
T ss_dssp CCEEEEEEEETTSS
T ss_pred CCCeEEEEecHHHH
Confidence 99999999998764
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.4e-47 Score=423.34 Aligned_cols=336 Identities=21% Similarity=0.218 Sum_probs=206.0
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007368 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
..+|+|+|.++|+.++.++++|+++|||+|||++|++|++..+..... ...+++|||+||++|+.||+++++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--------cCCCeEEEEeCCHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999988765421 113469999999999999999999
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc-cccceeEEEEecccccccCCCHHHH-HHHH
Q 007368 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGFEPQI-RKIV 319 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~~~~~gf~~~i-~~i~ 319 (606)
+++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++.++++...+ ..++
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 156 (556)
T 4a2p_A 77 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 156 (556)
T ss_dssp HHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHH
T ss_pred HHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHH
Confidence 9988778999999999877777777777799999999999999988877 7899999999999999987743333 2222
Q ss_pred HhcCCCCCCCceEEEEeccChH-----------HHHHHHHHhhcCcEEEEecccc-C---ccCceeEEEEEec-------
Q 007368 320 QQMDMPPPGVRQTMLFSATFPK-----------EIQKLASDFLANYVFLAVGRVG-S---STDLIVQRVEYVH------- 377 (606)
Q Consensus 320 ~~l~~~~~~~~q~ll~SAT~~~-----------~i~~l~~~~l~~~~~~~~~~~~-~---~~~~i~~~~~~~~------- 377 (606)
........+..|+++||||++. .+..+...+-...+ ....... . ........+..+.
T Consensus 157 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
T 4a2p_A 157 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAI-STVRENIQELQRFMNKPEIDVRLVKRRIHNPF 235 (556)
T ss_dssp HHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEE-ECCCTTHHHHHHHTCCCCEEEEECCCCSCCHH
T ss_pred HhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEe-cchhcchHHHHhcCCCCceEEEEcCCCcCChH
Confidence 2211112345789999999842 22222222211111 1110000 0 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007368 378 -------------------------------------------------------------------------------- 377 (606)
Q Consensus 378 -------------------------------------------------------------------------------- 377 (606)
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (556)
T 4a2p_A 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 315 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------cchhhhHHHHHHHHHHhcccCCCCce
Q 007368 378 ------------------------------------------------------ESDKRSHLMDLLHAQVANGVHGKQSL 403 (606)
Q Consensus 378 ------------------------------------------------------~~~k~~~l~~ll~~~~~~~~~~~~~~ 403 (606)
...|...|.++|.+.... ....+
T Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~---~~~~k 392 (556)
T 4a2p_A 316 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY---NPQTR 392 (556)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH---CTTCC
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC---CCCce
Confidence 133455555555544322 23678
Q ss_pred EEEEEcchhhHHHHHHHHHhC------------CCCcEEeeCccCHHHHHHHHHhccC-CCCcEEEEccccccCCCCCCc
Q 007368 404 TLVFVETKKGADALEHWLYMN------------GFPATTIHGDRTQQERELALRSFKS-GKTPILVATDVAARGLDIPHV 470 (606)
Q Consensus 404 ~LVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLVaT~v~~~GlDip~v 470 (606)
+||||++++.++.|++.|... +.....+|++|++.+|.+++++|++ |+++|||||+++++|||+|+|
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v 472 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 472 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhC
Confidence 999999999999999999775 5556677888999999999999999 999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChh
Q 007368 471 AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 471 ~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~ 511 (606)
++||+||+|+|+..|+||+|| ||. ++|.|++|++..+..
T Consensus 473 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 473 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999 999 899999999886553
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.5e-47 Score=419.41 Aligned_cols=340 Identities=20% Similarity=0.247 Sum_probs=236.9
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007368 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
.+|+|+|.++++.++.++++|+++|||+|||++|++|++..+..... ...+++|||+||++|+.||++++++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--------GQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999988765421 1234599999999999999999999
Q ss_pred hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc-cccceeEEEEecccccccCCC-HHHHHHHHH
Q 007368 243 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGF-EPQIRKIVQ 320 (606)
Q Consensus 243 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~~~~~gf-~~~i~~i~~ 320 (606)
++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++.+.+. ...+..++.
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLD 154 (555)
T ss_dssp HHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHH
Confidence 988889999999999977776667777799999999999999988777 789999999999999988752 222323333
Q ss_pred h-cCCCCCCCceEEEEeccChH-----------HHHHHHHHhhcCcEEEEeccc-c---CccCceeEEEEEe--------
Q 007368 321 Q-MDMPPPGVRQTMLFSATFPK-----------EIQKLASDFLANYVFLAVGRV-G---SSTDLIVQRVEYV-------- 376 (606)
Q Consensus 321 ~-l~~~~~~~~q~ll~SAT~~~-----------~i~~l~~~~l~~~~~~~~~~~-~---~~~~~i~~~~~~~-------- 376 (606)
. +........|+++||||++. .+..+... +....+...... . .........+..+
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTF 233 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChH
Confidence 2 22222356799999999843 22222222 221111111000 0 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007368 377 -------------------------------------------------------------------------------- 376 (606)
Q Consensus 377 -------------------------------------------------------------------------------- 376 (606)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (555)
T 3tbk_A 234 KCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDA 313 (555)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------ccchhhhHHHHHHHHHHhcccCCCCc
Q 007368 377 ------------------------------------------------------HESDKRSHLMDLLHAQVANGVHGKQS 402 (606)
Q Consensus 377 ------------------------------------------------------~~~~k~~~l~~ll~~~~~~~~~~~~~ 402 (606)
....|...+.++|...... ....
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~---~~~~ 390 (555)
T 3tbk_A 314 LIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHL---KPET 390 (555)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH---CTTC
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhcc---CCCc
Confidence 0134555556666554432 2357
Q ss_pred eEEEEEcchhhHHHHHHHHHhCC------------CCcEEeeCccCHHHHHHHHHhccC-CCCcEEEEccccccCCCCCC
Q 007368 403 LTLVFVETKKGADALEHWLYMNG------------FPATTIHGDRTQQERELALRSFKS-GKTPILVATDVAARGLDIPH 469 (606)
Q Consensus 403 ~~LVF~~s~~~~~~l~~~L~~~~------------~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLVaT~v~~~GlDip~ 469 (606)
++||||+++++++.|++.|...+ .....+||+|++.+|.+++++|++ |+++|||||+++++|||+|+
T Consensus 391 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~ 470 (555)
T 3tbk_A 391 KTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAE 470 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTS
T ss_pred eEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCcccc
Confidence 89999999999999999998763 344556679999999999999999 99999999999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHH
Q 007368 470 VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPL 516 (606)
Q Consensus 470 v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l 516 (606)
|++||+||+|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 471 v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 471 CNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999999999 999 89999999998776555444
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=9.7e-48 Score=438.19 Aligned_cols=361 Identities=19% Similarity=0.255 Sum_probs=232.2
Q ss_pred HHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHH
Q 007368 155 LNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSS 234 (606)
Q Consensus 155 ~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~ 234 (606)
+.+..++|.+|+|+|.++|+.++.++++|+++|||+|||++|++|++..+..... ...+++|||+||++|+.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~lvl~Pt~~L~~ 75 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--------GQKGKVVFFANQIPVYE 75 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--------TCCCCEEEECSSHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--------CCCCeEEEEECCHHHHH
Confidence 4566788999999999999999999999999999999999999999987765421 11235999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc-cccceeEEEEecccccccCC-CH
Q 007368 235 QIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMG-FE 312 (606)
Q Consensus 235 Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~~~~~g-f~ 312 (606)
||++++++++...++++..++|+.....+...+...++|+|+||++|.+++....+ .+.++++|||||||++.+.. +.
T Consensus 76 Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~ 155 (696)
T 2ykg_A 76 QNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYN 155 (696)
T ss_dssp HHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHH
T ss_pred HHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHH
Confidence 99999999987778999999998876666666667899999999999999998776 78999999999999988654 22
Q ss_pred HHHHHHHH-hcCCCCCCCceEEEEeccCh--------HHHHHHHHHh---------------------hcCcEEEEeccc
Q 007368 313 PQIRKIVQ-QMDMPPPGVRQTMLFSATFP--------KEIQKLASDF---------------------LANYVFLAVGRV 362 (606)
Q Consensus 313 ~~i~~i~~-~l~~~~~~~~q~ll~SAT~~--------~~i~~l~~~~---------------------l~~~~~~~~~~~ 362 (606)
..+...+. .+........++|+||||+. ..+..+.... ...+........
T Consensus 156 ~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~ 235 (696)
T 2ykg_A 156 MIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 235 (696)
T ss_dssp HHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECC
T ss_pred HHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecC
Confidence 22222222 22222345679999999986 1122221111 011110000000
Q ss_pred cCc-----------------------------------------------------------------------------
Q 007368 363 GSS----------------------------------------------------------------------------- 365 (606)
Q Consensus 363 ~~~----------------------------------------------------------------------------- 365 (606)
...
T Consensus 236 ~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (696)
T 2ykg_A 236 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 315 (696)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Confidence 000
Q ss_pred ----------------------------------cCceeEEEEE----------------eccchhhhHHHHHHHHHHhc
Q 007368 366 ----------------------------------TDLIVQRVEY----------------VHESDKRSHLMDLLHAQVAN 395 (606)
Q Consensus 366 ----------------------------------~~~i~~~~~~----------------~~~~~k~~~l~~ll~~~~~~ 395 (606)
...+.+.+.. .....|...|.+++......
T Consensus 316 l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~ 395 (696)
T 2ykg_A 316 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL 395 (696)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Confidence 0000000000 01344556666666655322
Q ss_pred ccCCCCceEEEEEcchhhHHHHHHHHHhCC----CCcEEe--------eCccCHHHHHHHHHhccC-CCCcEEEEccccc
Q 007368 396 GVHGKQSLTLVFVETKKGADALEHWLYMNG----FPATTI--------HGDRTQQERELALRSFKS-GKTPILVATDVAA 462 (606)
Q Consensus 396 ~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~----~~~~~l--------hg~~~~~~R~~~l~~F~~-g~~~iLVaT~v~~ 462 (606)
....++||||++++.++.|+++|...+ +.+..+ |++|++.+|.+++++|++ |+++|||||++++
T Consensus 396 ---~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~ 472 (696)
T 2ykg_A 396 ---NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 472 (696)
T ss_dssp ---CTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSC
T ss_pred ---CCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhh
Confidence 235689999999999999999999987 888888 569999999999999998 9999999999999
Q ss_pred cCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHH----HHHHHHhcCccc
Q 007368 463 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPL----AELMQESNQEVP 528 (606)
Q Consensus 463 ~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l----~~~l~~~~q~vp 528 (606)
+|||||+|++||+||+|+++++|+||+|| ||. +.|.|+.|++..+......+ .+++.....+++
T Consensus 473 ~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 473 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp CC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 998 88999999998776554444 344444444443
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-46 Score=440.68 Aligned_cols=333 Identities=19% Similarity=0.240 Sum_probs=260.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007368 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
..|..+++++.+...+....+..|+|+|+++|+.++.++++|++|+||||||++|++|++..+... +
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-------------~ 228 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------------Q 228 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-------------C
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-------------C
Confidence 356666777766666666677789999999999999999999999999999999999999877432 3
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEe
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 301 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlD 301 (606)
++||++||++|+.|+++.++++.. .+.+++|+... ...++|+|+||++|.+++.+....+.++++||||
T Consensus 229 rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 297 (1108)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEh
Confidence 599999999999999999999754 56667777653 2458999999999999999888789999999999
Q ss_pred cccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHH--HHHHHHHhhcCcEEEEeccccCccCceeEEEE-----
Q 007368 302 EADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKE--IQKLASDFLANYVFLAVGRVGSSTDLIVQRVE----- 374 (606)
Q Consensus 302 Eah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~--i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~----- 374 (606)
|||+|.+++|...+..++..+ +...|+|+||||+|+. +..++..++..+..+........ .+...+.
T Consensus 298 EaH~l~d~~rg~~~e~ii~~l----~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~ 371 (1108)
T 3l9o_A 298 EVHYMRDKERGVVWEETIILL----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGD 371 (1108)
T ss_dssp TGGGTTSHHHHHHHHHHHHHS----CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS--CEEEEEEETTSS
T ss_pred hhhhccccchHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEeecCCc
Confidence 999999999999999999988 6789999999999764 44666666655554433222111 1111110
Q ss_pred ----Eeccchh-------------------------------------------hhHHHHHHHHHHhcccCCCCceEEEE
Q 007368 375 ----YVHESDK-------------------------------------------RSHLMDLLHAQVANGVHGKQSLTLVF 407 (606)
Q Consensus 375 ----~~~~~~k-------------------------------------------~~~l~~ll~~~~~~~~~~~~~~~LVF 407 (606)
.+....+ ...+..++...... ...++|||
T Consensus 372 ~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~----~~~~vIVF 447 (1108)
T 3l9o_A 372 GIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK----KYNPVIVF 447 (1108)
T ss_dssp CCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT----TCCCEEEE
T ss_pred ceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc----CCCCEEEE
Confidence 1110000 22333344333322 25689999
Q ss_pred EcchhhHHHHHHHHHhCCCC---------------------------------------cEEeeCccCHHHHHHHHHhcc
Q 007368 408 VETKKGADALEHWLYMNGFP---------------------------------------ATTIHGDRTQQERELALRSFK 448 (606)
Q Consensus 408 ~~s~~~~~~l~~~L~~~~~~---------------------------------------~~~lhg~~~~~~R~~~l~~F~ 448 (606)
|++++.|+.++..|...++. +..+||+|++.+|+.+++.|+
T Consensus 448 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~ 527 (1108)
T 3l9o_A 448 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ 527 (1108)
T ss_dssp ESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHh
Confidence 99999999999988543222 688999999999999999999
Q ss_pred CCCCcEEEEccccccCCCCCCccEEEEecCC--------CCHhHHHHHhhccccCC--CcceEEEEeccC
Q 007368 449 SGKTPILVATDVAARGLDIPHVAHVVNFDLP--------NDIDDYVHRIGRTGRAG--KSGLATAFFNEN 508 (606)
Q Consensus 449 ~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p--------~s~~~y~QRiGR~gR~g--~~G~~~~~~~~~ 508 (606)
+|.++|||||+++++|||||++++||+++.| .++.+|+||+|||||.| ..|.|++++++.
T Consensus 528 ~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 528 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999999999999999977763 37778999999999999 689999998765
No 24
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1e-45 Score=426.44 Aligned_cols=339 Identities=21% Similarity=0.220 Sum_probs=213.2
Q ss_pred hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007368 159 RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
.+++.+|+|+|.++|+.++.++++|++++||+|||++|++|++..+..... ...+++|||+||++|+.||++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHHH
Confidence 346789999999999999999999999999999999999999988765421 113459999999999999999
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc-cccceeEEEEecccccccCCCHHH-HH
Q 007368 239 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGFEPQ-IR 316 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~~~~~gf~~~-i~ 316 (606)
++++++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++.+...... +.
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9999988778999999999987777777778899999999999999988777 789999999999999987653222 22
Q ss_pred HHHHhcCCCCCCCceEEEEeccCh-----------HHHHHHHHHhhcCcEEEEeccc-cC---ccCceeEEEEEec----
Q 007368 317 KIVQQMDMPPPGVRQTMLFSATFP-----------KEIQKLASDFLANYVFLAVGRV-GS---STDLIVQRVEYVH---- 377 (606)
Q Consensus 317 ~i~~~l~~~~~~~~q~ll~SAT~~-----------~~i~~l~~~~l~~~~~~~~~~~-~~---~~~~i~~~~~~~~---- 377 (606)
.++...........|+++||||+. ..+..+...+-...+. ..... .. ........+..+.
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 473 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIS-TVRENIQELQRFMNKPEIDVRLVKRRIH 473 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEE-CCCTTHHHHHHHSCCCCCEEEECCCCSC
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEe-cccccHHHHHHhcCCCceEEEecCCCCC
Confidence 333221111245678999999984 2333333221111111 10000 00 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007368 378 -------------------------------------------------------------------------------- 377 (606)
Q Consensus 378 -------------------------------------------------------------------------------- 377 (606)
T Consensus 474 ~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 553 (797)
T 4a2q_A 474 NPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 553 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------cchhhhHHHHHHHHHHhcccCCC
Q 007368 378 ---------------------------------------------------------ESDKRSHLMDLLHAQVANGVHGK 400 (606)
Q Consensus 378 ---------------------------------------------------------~~~k~~~l~~ll~~~~~~~~~~~ 400 (606)
...|...|.++|...... ..
T Consensus 554 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~---~~ 630 (797)
T 4a2q_A 554 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY---NP 630 (797)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH---CS
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhcc---CC
Confidence 123444455555543322 23
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC------------CCCcEEeeCccCHHHHHHHHHhccC-CCCcEEEEccccccCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN------------GFPATTIHGDRTQQERELALRSFKS-GKTPILVATDVAARGLDI 467 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLVaT~v~~~GlDi 467 (606)
..++||||++++.++.|+++|... +..+..+|++|++.+|..++++|++ |+++|||||+++++|||+
T Consensus 631 ~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDl 710 (797)
T 4a2q_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 710 (797)
T ss_dssp SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------
T ss_pred CCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCc
Confidence 678999999999999999999873 5566677999999999999999999 999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChh
Q 007368 468 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 468 p~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~ 511 (606)
|+|++||+||+|+|+..|+||+|| ||. ++|.|++|++..+..
T Consensus 711 p~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 711 VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999 999 899999999876553
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6e-45 Score=415.86 Aligned_cols=340 Identities=21% Similarity=0.279 Sum_probs=264.5
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007368 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPI-SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~-i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
.+|++++|++.+.+.++..+|.+|+|+|.++++. ++.+++++++||||||||++|.++++..+... +
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------~ 75 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------G 75 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------C
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------C
Confidence 4699999999999999999999999999999998 78899999999999999999999999887643 1
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
.++||++|+++||.|+++.++++.. .++++..++|+....... + ..++|+|+||++|..++.+....++++++||+
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEE
Confidence 3599999999999999999966543 478888888876544321 1 36899999999999999887766899999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCce--------eEE
Q 007368 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLI--------VQR 372 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i--------~~~ 372 (606)
||||++.+..+...++.++..+. ..|+|+||||+++. ..+++ ++....+....+.......+ ...
T Consensus 152 DE~H~l~~~~~~~~l~~i~~~~~-----~~~ii~lSATl~n~-~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~ 224 (715)
T 2va8_A 152 DELHYLNDPERGPVVESVTIRAK-----RRNLLALSATISNY-KQIAK-WLGAEPVATNWRPVPLIEGVIYPERKKKEYN 224 (715)
T ss_dssp CSGGGGGCTTTHHHHHHHHHHHH-----TSEEEEEESCCTTH-HHHHH-HHTCEEEECCCCSSCEEEEEEEECSSTTEEE
T ss_pred echhhcCCcccchHHHHHHHhcc-----cCcEEEEcCCCCCH-HHHHH-HhCCCccCCCCCCCCceEEEEecCCccccee
Confidence 99999998889999999988873 67999999999752 34444 44432221111100000000 001
Q ss_pred EEEeccch----hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCC-----------------------
Q 007368 373 VEYVHESD----KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNG----------------------- 425 (606)
Q Consensus 373 ~~~~~~~~----k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~----------------------- 425 (606)
+.+..... ....+.+++.+... +..++||||+++++++.+++.|....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~ 299 (715)
T 2va8_A 225 VIFKDNTTKKVHGDDAIIAYTLDSLS-----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEG 299 (715)
T ss_dssp EEETTSCEEEEESSSHHHHHHHHHHT-----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSS
T ss_pred eecCcchhhhcccchHHHHHHHHHHh-----cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhc
Confidence 11111000 01233444444432 26789999999999999999997642
Q ss_pred -------------CCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE----ec-------CCCC
Q 007368 426 -------------FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FD-------LPND 481 (606)
Q Consensus 426 -------------~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~----~d-------~p~s 481 (606)
..+..+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+
T Consensus 300 ~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 300 GSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp CHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred cccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 34889999999999999999999999999999999999999999999999 99 8999
Q ss_pred HhHHHHHhhccccCCC--cceEEEEeccCC
Q 007368 482 IDDYVHRIGRTGRAGK--SGLATAFFNENN 509 (606)
Q Consensus 482 ~~~y~QRiGR~gR~g~--~G~~~~~~~~~~ 509 (606)
..+|+||+|||||.|. .|.|+.+++..+
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999999999999884 799999998765
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-45 Score=421.83 Aligned_cols=336 Identities=20% Similarity=0.271 Sum_probs=267.6
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007368 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPI-SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~-i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
+|+++++++.+.+.++..+|.+|+|+|.++++. ++.++++++++|||||||++|.+|++..+.... .
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~------------~ 69 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG------------G 69 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC------------S
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC------------C
Confidence 589999999999999999999999999999998 888999999999999999999999998876431 3
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEe
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 301 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlD 301 (606)
++||++|+++|+.|+++.+++|.. .++++..++|+...... ....++|+|+||++|..++.+....++++++||+|
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 599999999999999999976654 37889988887654332 12358999999999999998876668999999999
Q ss_pred cccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEE------EE
Q 007368 302 EADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRV------EY 375 (606)
Q Consensus 302 Eah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~------~~ 375 (606)
|||++.++.+...+..++..+. ...|+|+||||+++. ..+.+ ++....+.... ....+...+ .+
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~----~~~~ii~lSATl~n~-~~~~~-~l~~~~~~~~~----rp~~l~~~~~~~~~~~~ 215 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHML----GKAQIIGLSATIGNP-EELAE-WLNAELIVSDW----RPVKLRRGVFYQGFVTW 215 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHB----TTBEEEEEECCCSCH-HHHHH-HTTEEEEECCC----CSSEEEEEEEETTEEEE
T ss_pred CCcccCCCcccHHHHHHHHHhh----cCCeEEEEcCCcCCH-HHHHH-HhCCcccCCCC----CCCcceEEEEeCCeeec
Confidence 9999999889999999999884 378999999999762 34444 44322211100 001111111 11
Q ss_pred eccc-hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC------------------------------
Q 007368 376 VHES-DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN------------------------------ 424 (606)
Q Consensus 376 ~~~~-~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~------------------------------ 424 (606)
.... .....+.+++.+.... ..++||||++++.++.++..|...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~-----~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 290 (720)
T 2zj8_A 216 EDGSIDRFSSWEELVYDAIRK-----KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLA 290 (720)
T ss_dssp TTSCEEECSSTTHHHHHHHHT-----TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHhC-----CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHH
Confidence 1100 0012223333333322 577999999999999999998653
Q ss_pred ---CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE----ec----CCCCHhHHHHHhhccc
Q 007368 425 ---GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FD----LPNDIDDYVHRIGRTG 493 (606)
Q Consensus 425 ---~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~----~d----~p~s~~~y~QRiGR~g 493 (606)
...+..+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.++.+|+||+||||
T Consensus 291 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaG 370 (720)
T 2zj8_A 291 KAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAG 370 (720)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBC
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcC
Confidence 124889999999999999999999999999999999999999999999998 77 6899999999999999
Q ss_pred cCC--CcceEEEEeccCC
Q 007368 494 RAG--KSGLATAFFNENN 509 (606)
Q Consensus 494 R~g--~~G~~~~~~~~~~ 509 (606)
|.| ..|.|+++++..+
T Consensus 371 R~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 371 RPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp CTTTCSEEEEEEECSSSC
T ss_pred CCCCCCCceEEEEecCcc
Confidence 988 4799999998876
No 27
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=9.9e-46 Score=409.07 Aligned_cols=323 Identities=18% Similarity=0.237 Sum_probs=232.0
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+|+|..+++.+++|+ |+.++||+|||++|++|++...+.. +.++||+||++||.|+++++..|
T Consensus 74 ~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-------------~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG-------------KGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCCEEEESSHHHHHHHHHHHHHH
T ss_pred CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC-------------CcEEEEcCCHHHHHHHHHHHHHH
Confidence 89999999999999998 9999999999999999998654321 34999999999999999999999
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhc------cccccceeEEEEecccccc-cCC-----
Q 007368 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG----- 310 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~g----- 310 (606)
....++++.+++||.+.. .+.+..+++|+|+||++| +++|... .+.++.+.++||||||+|+ +++
T Consensus 139 ~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 999999999999998753 445556799999999999 7888754 2467899999999999999 553
Q ss_pred ----------CHHHHHHHHHhcCCC----------------CCCCceEE------------------------EEeccCh
Q 007368 311 ----------FEPQIRKIVQQMDMP----------------PPGVRQTM------------------------LFSATFP 340 (606)
Q Consensus 311 ----------f~~~i~~i~~~l~~~----------------~~~~~q~l------------------------l~SAT~~ 340 (606)
|..++..|+..+... .++.+|++ +||||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 567788888877320 01245654 8999976
Q ss_pred HHHHHH---H--HHhhc---CcE----------------------------------EEEeccccCccCcee--------
Q 007368 341 KEIQKL---A--SDFLA---NYV----------------------------------FLAVGRVGSSTDLIV-------- 370 (606)
Q Consensus 341 ~~i~~l---~--~~~l~---~~~----------------------------------~~~~~~~~~~~~~i~-------- 370 (606)
..+..+ + ..++. +|+ .+.+.........|.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 422211 1 11111 010 111111111111111
Q ss_pred ---------------------------------------EEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcch
Q 007368 371 ---------------------------------------QRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETK 411 (606)
Q Consensus 371 ---------------------------------------~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~ 411 (606)
+.+.++....|...+.+.+..... +..++||||+|+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~-----~gqpvLVft~si 451 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTA-----KGQPVLVGTISI 451 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHT-----TTCCEEEEESSH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhc-----CCCCEEEEECcH
Confidence 123455667788888887765532 267899999999
Q ss_pred hhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCC----------------------
Q 007368 412 KGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPH---------------------- 469 (606)
Q Consensus 412 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~---------------------- 469 (606)
+.++.|++.|+..++++..||+++.+.+++.+.+.|+.| .|+|||++|+||+||+.
T Consensus 452 e~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~ 529 (853)
T 2fsf_A 452 EKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKI 529 (853)
T ss_dssp HHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHH
Confidence 999999999999999999999999999999999999988 69999999999999997
Q ss_pred ----------c-----cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007368 470 ----------V-----AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 470 ----------v-----~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
| .|||+++.|.|.+.|+||+|||||.|.+|.+++|++.+|.
T Consensus 530 ~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 530 KADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 3 5999999999999999999999999999999999998764
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3e-45 Score=430.19 Aligned_cols=323 Identities=23% Similarity=0.294 Sum_probs=264.1
Q ss_pred hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007368 159 RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
..+| +|||+|+++|+.+++++|+|++||||||||++|+++++..+.. ++++|||+||++||.|+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------------~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------------TCCEEEEESSHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------------CCeEEEEechHHHHHHHHH
Confidence 3567 7999999999999999999999999999999888887766521 2459999999999999999
Q ss_pred HHHHhhhcCCcEEEEEECCCCh---HHHHHHHhcC-CcEEEecHHHHHHHHHhccccccceeEEEEecccc---------
Q 007368 239 EAKKFSYQTGVKVVVAYGGAPI---NQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADR--------- 305 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~--------- 305 (606)
.+++|. ..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||+
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 999987 678999999999987 6677777776 99999999999988875 5688999999999965
Q ss_pred -ccc-CCCHHH-HHHHHHhcC-------CCCCCCceEEEEecc-ChHHHH-HHHHHhhcCcEEEEeccccCccCceeEEE
Q 007368 306 -MLD-MGFEPQ-IRKIVQQMD-------MPPPGVRQTMLFSAT-FPKEIQ-KLASDFLANYVFLAVGRVGSSTDLIVQRV 373 (606)
Q Consensus 306 -~~~-~gf~~~-i~~i~~~l~-------~~~~~~~q~ll~SAT-~~~~i~-~l~~~~l~~~~~~~~~~~~~~~~~i~~~~ 373 (606)
|++ ++|..+ +..++..+. .......|+++|||| +|..+. .+...++. +.+.........+.+.+
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 292 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEE
Confidence 555 899888 888888762 111267899999999 666554 23333333 33334444556666666
Q ss_pred EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcE-EeeCccCHHHHHHHHHhccCCCC
Q 007368 374 EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPAT-TIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 374 ~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
..+ .|...+.+++... ..++||||++++.++.+++.|...++.+. .+||+ |.+ ++.|++|+.
T Consensus 293 ~~~---~k~~~L~~ll~~~--------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~ 355 (1104)
T 4ddu_A 293 ISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKI 355 (1104)
T ss_dssp ESC---CCHHHHHHHHHHH--------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSC
T ss_pred Eec---CHHHHHHHHHHhc--------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCC
Confidence 544 5666777777662 46799999999999999999999999998 99993 455 999999999
Q ss_pred cEEEE----ccccccCCCCCC-ccEEEEecCCC-----------------------------------------------
Q 007368 453 PILVA----TDVAARGLDIPH-VAHVVNFDLPN----------------------------------------------- 480 (606)
Q Consensus 453 ~iLVa----T~v~~~GlDip~-v~~VI~~d~p~----------------------------------------------- 480 (606)
+|||| |+++++|||||+ |++|||||+|.
T Consensus 356 ~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~ 435 (1104)
T 4ddu_A 356 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQK 435 (1104)
T ss_dssp SEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHH
T ss_pred CEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99999 999999999999 99999999998
Q ss_pred -------------------------CHhHHHHHhhccccCCC----cceEEEEeccCChhhHHHHHHHHH
Q 007368 481 -------------------------DIDDYVHRIGRTGRAGK----SGLATAFFNENNLSLARPLAELMQ 521 (606)
Q Consensus 481 -------------------------s~~~y~QRiGR~gR~g~----~G~~~~~~~~~~~~~~~~l~~~l~ 521 (606)
++.+|+||+|||||.+. +|.+++|+ +|...++.|.+.++
T Consensus 436 ~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 436 EFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 78899999999999654 45555555 77888888888776
No 29
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.7e-45 Score=402.64 Aligned_cols=328 Identities=19% Similarity=0.226 Sum_probs=260.1
Q ss_pred hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007368 159 RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
..++ .|+++|..+++.+++|+ |++++||+|||++|++|++...+.. ..++||+||++||.|+++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g-------------~~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG-------------NGVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-------------SCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC-------------CCeEEEeCCHHHHHHHHH
Confidence 4577 99999999999999998 9999999999999999997655432 239999999999999999
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhc------cccccceeEEEEecccccc-cC-
Q 007368 239 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DM- 309 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~- 309 (606)
++..+...+++++.+++||.+.. .+.+..+|+|+|+||++| +++|... .+.+..+.++||||||+|+ |+
T Consensus 171 ~m~~l~~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 171 WMGRVHRFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHHhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 99999999999999999998743 344455799999999999 7887654 3567889999999999999 43
Q ss_pred --------------CCHHHHHHHHHhcCCC-----CCCCceEE-----------------EEeccChH---HHHHHH--H
Q 007368 310 --------------GFEPQIRKIVQQMDMP-----PPGVRQTM-----------------LFSATFPK---EIQKLA--S 348 (606)
Q Consensus 310 --------------gf~~~i~~i~~~l~~~-----~~~~~q~l-----------------l~SAT~~~---~i~~l~--~ 348 (606)
+|..++..|+..+... ..+.+|++ +||||.+. .+...+ .
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 5788999999998310 01678998 99999864 333322 1
Q ss_pred Hhhc-C--cE-----EEEeccc-----------------------------cCccCcee---------------------
Q 007368 349 DFLA-N--YV-----FLAVGRV-----------------------------GSSTDLIV--------------------- 370 (606)
Q Consensus 349 ~~l~-~--~~-----~~~~~~~-----------------------------~~~~~~i~--------------------- 370 (606)
.++. + |+ .+.+... ......|.
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 2221 1 11 1111100 00000011
Q ss_pred --------------------------EEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC
Q 007368 371 --------------------------QRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN 424 (606)
Q Consensus 371 --------------------------~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~ 424 (606)
+.+.++....|...+.+.+...... ..++||||+|++.++.|++.|...
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~-----gqpvLVft~Sie~sE~Ls~~L~~~ 483 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAK-----GQPVLIGTTSVERSEYLSRQFTKR 483 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHHHHHHHHC
Confidence 1134455667888888877665432 567999999999999999999999
Q ss_pred CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCc----------------------------------
Q 007368 425 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV---------------------------------- 470 (606)
Q Consensus 425 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v---------------------------------- 470 (606)
++++..||+++.+.+++.+.+.|+.| .|+|||++++||+||+.+
T Consensus 484 Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (922)
T 1nkt_A 484 RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELP 561 (922)
T ss_dssp TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHH
T ss_pred CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 99999999999888888888999988 699999999999999975
Q ss_pred ------------------cEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChh
Q 007368 471 ------------------AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 471 ------------------~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~ 511 (606)
.|||+++.|.|.+.|+||+|||||.|.+|.+++|++.+|.-
T Consensus 562 ~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 562 IVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred HHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 59999999999999999999999999999999999987753
No 30
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2e-45 Score=418.70 Aligned_cols=338 Identities=21% Similarity=0.295 Sum_probs=263.6
Q ss_pred ccccCC--CCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007368 143 TFAEID--LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 143 ~f~~~~--l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
+|++++ |++.+.+.++..+|.+|+|+|+++++.++.+++++++||||||||++|.+|++..+...
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 68 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG------------- 68 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------------
Confidence 477888 99999999999999999999999999999999999999999999999999999876532
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
.++||++|+++||.|+++.++++.. .++++..++|+...... ....++|+|+||++|..++.+....++++++||+
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 2499999999999999999976543 47889888887654332 1136899999999999999887666899999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEE------EE
Q 007368 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQR------VE 374 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~------~~ 374 (606)
||||++.++++...+..++..+... .+..|+|+||||+++ ...+++ ++....+....+. ..+... +.
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~-~~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~r~----~~l~~~~~~~~~~~ 217 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRM-NKALRVIGLSATAPN-VTEIAE-WLDADYYVSDWRP----VPLVEGVLCEGTLE 217 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHH-CTTCEEEEEECCCTT-HHHHHH-HTTCEEEECCCCS----SCEEEEEECSSEEE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhc-CcCceEEEECCCcCC-HHHHHH-HhCCCcccCCCCC----ccceEEEeeCCeee
Confidence 9999999988888888887766321 346899999999986 344444 4443332111110 011111 11
Q ss_pred Eeccch---hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC---------------------------
Q 007368 375 YVHESD---KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN--------------------------- 424 (606)
Q Consensus 375 ~~~~~~---k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--------------------------- 424 (606)
+..... +...+.+++.+... +..++||||++++.++.+++.|...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 292 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECVA-----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLA 292 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHHH-----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHH
T ss_pred ccCcchhhhhhhhHHHHHHHHHh-----cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHH
Confidence 111111 11113334433332 2677999999999999999988653
Q ss_pred ---CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE----ec---CCCCHhHHHHHhhcccc
Q 007368 425 ---GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FD---LPNDIDDYVHRIGRTGR 494 (606)
Q Consensus 425 ---~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~----~d---~p~s~~~y~QRiGR~gR 494 (606)
.+.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|++++||+ || .|.++.+|+||+|||||
T Consensus 293 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR 372 (702)
T 2p6r_A 293 ECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGR 372 (702)
T ss_dssp HHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSC
T ss_pred HHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCC
Confidence 245788999999999999999999999999999999999999999999998 76 78999999999999999
Q ss_pred CC--CcceEEEEeccCC
Q 007368 495 AG--KSGLATAFFNENN 509 (606)
Q Consensus 495 ~g--~~G~~~~~~~~~~ 509 (606)
.| ..|.|+++++..+
T Consensus 373 ~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 373 PGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TTTCSCEEEEEECCGGG
T ss_pred CCCCCCceEEEEecCcc
Confidence 98 4799999998766
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-44 Score=422.16 Aligned_cols=338 Identities=21% Similarity=0.224 Sum_probs=209.5
Q ss_pred hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007368 159 RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
..++.+|+|+|.++|+.++.++++|++++||+|||++|++|++..+..... ...+++|||+||++|+.||++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~vLvl~Pt~~L~~Q~~~ 314 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKN 314 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------SCCCCEEEECSSHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHHH
Confidence 345778999999999999999999999999999999999999877654321 113459999999999999999
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc-cccceeEEEEecccccccCCC-HHHHH
Q 007368 239 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGF-EPQIR 316 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~~~~~gf-~~~i~ 316 (606)
++++++...++++..++|+.....+...+..+++|+|+||++|.+++.+..+ .+.++++|||||||++...+. ...+.
T Consensus 315 ~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~ 394 (936)
T 4a2w_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (936)
T ss_dssp HHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHH
Confidence 9999988778999999999877666666666799999999999999988776 788999999999999987652 22222
Q ss_pred HHHHhcCCCCCCCceEEEEeccCh-----------HHHHHHHHHhhcCcEEEEeccc-c---CccCceeEEEEEec----
Q 007368 317 KIVQQMDMPPPGVRQTMLFSATFP-----------KEIQKLASDFLANYVFLAVGRV-G---SSTDLIVQRVEYVH---- 377 (606)
Q Consensus 317 ~i~~~l~~~~~~~~q~ll~SAT~~-----------~~i~~l~~~~l~~~~~~~~~~~-~---~~~~~i~~~~~~~~---- 377 (606)
.++...........|+++||||+. ..+..+...+-...+ ...... . .........+..+.
T Consensus 395 ~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i-~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 473 (936)
T 4a2w_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAI-STVRENIQELQRFMNKPEIDVRLVKRRIH 473 (936)
T ss_dssp HHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHSCCCCEEEEECCCCSC
T ss_pred HHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCcee-ecccccHHHHHHhccCCcceEEecccccC
Confidence 333321111245578999999984 223333222111111 100000 0 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007368 378 -------------------------------------------------------------------------------- 377 (606)
Q Consensus 378 -------------------------------------------------------------------------------- 377 (606)
T Consensus 474 ~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 553 (936)
T 4a2w_A 474 NPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 553 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------cchhhhHHHHHHHHHHhcccCCC
Q 007368 378 ---------------------------------------------------------ESDKRSHLMDLLHAQVANGVHGK 400 (606)
Q Consensus 378 ---------------------------------------------------------~~~k~~~l~~ll~~~~~~~~~~~ 400 (606)
...|...|.++|..... ...
T Consensus 554 ~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~---~~~ 630 (936)
T 4a2w_A 554 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR---YNP 630 (936)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT---SCT
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc---cCC
Confidence 11222333333333221 134
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC------------CCCcEEeeCccCHHHHHHHHHhccC-CCCcEEEEccccccCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN------------GFPATTIHGDRTQQERELALRSFKS-GKTPILVATDVAARGLDI 467 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLVaT~v~~~GlDi 467 (606)
..++||||++++.++.|+++|... |..+..+||+|++.+|.+++++|+. |+++|||||+++++||||
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDl 710 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 710 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------C
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcc
Confidence 688999999999999999999976 5556667899999999999999999 999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCCh
Q 007368 468 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNL 510 (606)
Q Consensus 468 p~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~ 510 (606)
|+|++||+||+|+|+..|+||+|| ||. +.|.++.|++..+.
T Consensus 711 p~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 711 VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999999999 999 88999999987554
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.8e-45 Score=430.84 Aligned_cols=325 Identities=18% Similarity=0.268 Sum_probs=262.6
Q ss_pred HhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007368 158 RRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 158 ~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
+.++|. | |+|+++|+.++.++|+|++||||||||+ |++|++..+... ++++|||+||++||.|++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~------------~~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK------------GKRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT------------SCCEEEEESCHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc------------CCeEEEEeccHHHHHHHH
Confidence 357898 9 9999999999999999999999999998 899998877542 245999999999999999
Q ss_pred HHHHHhhhcCCc----EEEEEECCCChHHH---HHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCC
Q 007368 238 DEAKKFSYQTGV----KVVVAYGGAPINQQ---LRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG 310 (606)
Q Consensus 238 ~~~~~~~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g 310 (606)
+.+++++...++ ++.+++|+.+...+ ...+.. ++|+|+||++|++++.+ +.++++|||||||+|++
T Consensus 117 ~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~-- 189 (1054)
T 1gku_B 117 ETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK-- 189 (1054)
T ss_dssp HHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--
T ss_pred HHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--
Confidence 999999887788 89999999887663 344455 99999999999998765 67899999999999998
Q ss_pred CHHHHHHHHHhcCCC-------CCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhh
Q 007368 311 FEPQIRKIVQQMDMP-------PPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRS 383 (606)
Q Consensus 311 f~~~i~~i~~~l~~~-------~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 383 (606)
|...++.++..+... .+..+|+++||||++.. ..++..++.++..+.+.........+.+.+. ...|..
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~ 265 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESIS 265 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTT
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHH
Confidence 568888888776311 13457899999999876 5444455544443444433444455655544 456666
Q ss_pred HHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEE----cc
Q 007368 384 HLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA----TD 459 (606)
Q Consensus 384 ~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVa----T~ 459 (606)
.+.+++... ..++||||++++.|+.+++.|+.. +.+..+||+| +.+++.|++|+.+|||| |+
T Consensus 266 ~L~~ll~~~--------~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Td 331 (1054)
T 1gku_B 266 TLSSILEKL--------GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYG 331 (1054)
T ss_dssp TTHHHHTTS--------CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC---
T ss_pred HHHHHHhhc--------CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCC
Confidence 666666432 456999999999999999999888 9999999998 47889999999999999 99
Q ss_pred ccccCCCCCCc-cEEEEecCC-----------------------------------------------------------
Q 007368 460 VAARGLDIPHV-AHVVNFDLP----------------------------------------------------------- 479 (606)
Q Consensus 460 v~~~GlDip~v-~~VI~~d~p----------------------------------------------------------- 479 (606)
++++|||||+| ++||+||+|
T Consensus 332 v~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (1054)
T 1gku_B 332 TLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQA 411 (1054)
T ss_dssp ---CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSC
T ss_pred eeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999996 999999999
Q ss_pred ------------CCHhHHHHHhhccccCCCcc--eEEEEeccCChhhHHHHHHHHHH
Q 007368 480 ------------NDIDDYVHRIGRTGRAGKSG--LATAFFNENNLSLARPLAELMQE 522 (606)
Q Consensus 480 ------------~s~~~y~QRiGR~gR~g~~G--~~~~~~~~~~~~~~~~l~~~l~~ 522 (606)
.+..+|+||+|||||.|+.| .+++|+..++...+..|.+.++.
T Consensus 412 ~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 412 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48888888888888888888774
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-43 Score=382.31 Aligned_cols=326 Identities=21% Similarity=0.236 Sum_probs=249.2
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
+|+|+|.++++.++.+ ++|++++||+|||++++++++..+... ..++|||+|+++|+.||+++++++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY------------GGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS------------CSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC------------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 6999999999999999 999999999999999999988776511 124999999999999999999998
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcC
Q 007368 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 323 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~ 323 (606)
......++..++|+....... .+...++|+|+||++|...+....+.+.++++||+||||++.+......+...+...
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~- 153 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ- 153 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH-
T ss_pred hCcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc-
Confidence 644455888888887755433 333458999999999999998887788999999999999998765444555555444
Q ss_pred CCCCCCceEEEEeccChH---HHHHHHHHhhcCcEEEEeccccCccC---ceeEEEEEe---------------------
Q 007368 324 MPPPGVRQTMLFSATFPK---EIQKLASDFLANYVFLAVGRVGSSTD---LIVQRVEYV--------------------- 376 (606)
Q Consensus 324 ~~~~~~~q~ll~SAT~~~---~i~~l~~~~l~~~~~~~~~~~~~~~~---~i~~~~~~~--------------------- 376 (606)
....++++||||+.. ++..+...+................. .....+..+
T Consensus 154 ---~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (494)
T 1wp9_A 154 ---AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDAL 230 (494)
T ss_dssp ---CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 456789999999863 34444443322222111100000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007368 377 -------------------------------------------------------------------------------- 376 (606)
Q Consensus 377 -------------------------------------------------------------------------------- 376 (606)
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (494)
T 1wp9_A 231 KPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA 310 (494)
T ss_dssp HHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc
Confidence
Q ss_pred -----------------------------ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCC
Q 007368 377 -----------------------------HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFP 427 (606)
Q Consensus 377 -----------------------------~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~ 427 (606)
....|...+.+++...... ....++||||++++.++.+++.|...++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~~~~ 387 (494)
T 1wp9_A 311 GSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR---KQNSKIIVFTNYRETAKKIVNELVKDGIK 387 (494)
T ss_dssp TCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH---CTTCCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc---CCCCeEEEEEccHHHHHHHHHHHHHcCCC
Confidence 1233445555555554321 23678999999999999999999999999
Q ss_pred cEEeeC--------ccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcc
Q 007368 428 ATTIHG--------DRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 499 (606)
Q Consensus 428 ~~~lhg--------~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G 499 (606)
+..+|| +|++.+|.+++++|++|+.+|||||+++++|||+|++++||+||+|+|+..|+||+||++|.|+ |
T Consensus 388 ~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g 466 (494)
T 1wp9_A 388 AKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-G 466 (494)
T ss_dssp EEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-S
T ss_pred cEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-c
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred eEEEEeccCChh
Q 007368 500 LATAFFNENNLS 511 (606)
Q Consensus 500 ~~~~~~~~~~~~ 511 (606)
.++.|+++.+.+
T Consensus 467 ~~~~l~~~~t~e 478 (494)
T 1wp9_A 467 RVIILMAKGTRD 478 (494)
T ss_dssp EEEEEEETTSHH
T ss_pred eEEEEEecCCHH
Confidence 999999987643
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-43 Score=406.92 Aligned_cols=314 Identities=20% Similarity=0.259 Sum_probs=248.3
Q ss_pred CCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007368 160 CKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 160 ~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
.+| +|+|+|+++|+.++.++++|++||||||||++|+++++..+.. +.++||++||++|+.|++++
T Consensus 83 ~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-------------g~rvL~l~PtkaLa~Q~~~~ 148 (1010)
T 2xgj_A 83 YPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------------KQRVIYTSPIKALSNQKYRE 148 (1010)
T ss_dssp CSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-------------TCEEEEEESSHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-------------CCeEEEECChHHHHHHHHHH
Confidence 355 5999999999999999999999999999999999998876632 23599999999999999999
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHH
Q 007368 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~ 319 (606)
+.++.. ++.+++|+.... ..++|+|+||++|.+++.+....+.++++|||||||+|.++++...+..++
T Consensus 149 l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 149 LLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp HHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHH
Confidence 998754 566777776543 257999999999999998877789999999999999999999999999999
Q ss_pred HhcCCCCCCCceEEEEeccChHHHH--HHHHHhhcCcEEEEeccccCccCceeEEEEE---------eccch--------
Q 007368 320 QQMDMPPPGVRQTMLFSATFPKEIQ--KLASDFLANYVFLAVGRVGSSTDLIVQRVEY---------VHESD-------- 380 (606)
Q Consensus 320 ~~l~~~~~~~~q~ll~SAT~~~~i~--~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~-------- 380 (606)
..+ +...|+|+||||+++..+ .++......+..+....... ..+.+.+.. +....
T Consensus 218 ~~l----~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1010)
T 2xgj_A 218 ILL----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQ 291 (1010)
T ss_dssp HHS----CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHH
T ss_pred Hhc----CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHH
Confidence 888 678899999999987532 33333334444433322111 112222211 11000
Q ss_pred ---------------------------h--------hhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCC
Q 007368 381 ---------------------------K--------RSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNG 425 (606)
Q Consensus 381 ---------------------------k--------~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~ 425 (606)
| ...+..++...... ...++||||++++.|+.+++.|...+
T Consensus 292 ~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~----~~~~~IVF~~sr~~~e~la~~L~~~~ 367 (1010)
T 2xgj_A 292 KAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK----KYNPVIVFSFSKRDCEELALKMSKLD 367 (1010)
T ss_dssp HHHHTCC------------------------------CHHHHHHHHHHHH----TCCSEEEEESSHHHHHHHHHTTTTSC
T ss_pred HHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhCC
Confidence 0 12223333333221 24579999999999999999987654
Q ss_pred CC---------------------------------------cEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCC
Q 007368 426 FP---------------------------------------ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLD 466 (606)
Q Consensus 426 ~~---------------------------------------~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlD 466 (606)
+. +..+||+|++.+|+.+++.|++|.++|||||+++++|||
T Consensus 368 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GID 447 (1010)
T 2xgj_A 368 FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 447 (1010)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTT
T ss_pred CCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCC
Confidence 42 678999999999999999999999999999999999999
Q ss_pred CCCccEEEE----ecC----CCCHhHHHHHhhccccCCC--cceEEEEeccC
Q 007368 467 IPHVAHVVN----FDL----PNDIDDYVHRIGRTGRAGK--SGLATAFFNEN 508 (606)
Q Consensus 467 ip~v~~VI~----~d~----p~s~~~y~QRiGR~gR~g~--~G~~~~~~~~~ 508 (606)
+|++++||+ ||. |.++.+|+||+|||||.|. .|.|++|+++.
T Consensus 448 iP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 448 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp CCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999999999 999 8999999999999999997 59999999865
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.3e-44 Score=409.31 Aligned_cols=333 Identities=21% Similarity=0.313 Sum_probs=230.0
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHH-HHHHH
Q 007368 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI-HDEAK 241 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi-~~~~~ 241 (606)
.+|+|+|.++|+.++.++++|+++|||+|||++|++|++..+...... ....++|||+|+++|+.|| +++++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-------~~~~~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-------SEPGKVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-------TCCCCBCCEESCSHHHHHHHHHTHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-------CCCCeEEEEECCHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999888765321 1113499999999999999 99999
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHH------HhccccccceeEEEEecccccccCC-CHHH
Q 007368 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL------ERARVSLQMIRYLALDEADRMLDMG-FEPQ 314 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l------~~~~~~l~~~~~lVlDEah~~~~~g-f~~~ 314 (606)
++... .+++..++|+.....+...+...++|+|+||++|.+.+ ....+.+..+++|||||||++.... +...
T Consensus 79 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 79 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred HHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 98755 48899999988766666666678999999999999988 4445678899999999999986544 2233
Q ss_pred HHHHHHhc---------CCCCCCCceEEEEeccChH-----------HHHHHHHHhhcCcEEEEecccc---CccCceeE
Q 007368 315 IRKIVQQM---------DMPPPGVRQTMLFSATFPK-----------EIQKLASDFLANYVFLAVGRVG---SSTDLIVQ 371 (606)
Q Consensus 315 i~~i~~~l---------~~~~~~~~q~ll~SAT~~~-----------~i~~l~~~~l~~~~~~~~~~~~---~~~~~i~~ 371 (606)
+..++... .....+..++|+||||+.. .+..+...+-...+........ ........
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 33222211 0111245689999999875 2222322221101000000000 00000000
Q ss_pred EEEEec--------------------------------------------------------------------------
Q 007368 372 RVEYVH-------------------------------------------------------------------------- 377 (606)
Q Consensus 372 ~~~~~~-------------------------------------------------------------------------- 377 (606)
.+..+.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 111100
Q ss_pred -------------------------------------------------------------cchhhhHHHHHHHHHHhcc
Q 007368 378 -------------------------------------------------------------ESDKRSHLMDLLHAQVANG 396 (606)
Q Consensus 378 -------------------------------------------------------------~~~k~~~l~~ll~~~~~~~ 396 (606)
...|...|.++|.......
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~ 397 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRT 397 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 1123333444444433221
Q ss_pred cCCCCceEEEEEcchhhHHHHHHHHHhC------CCCcEEeeCc--------cCHHHHHHHHHhccCCCCcEEEEccccc
Q 007368 397 VHGKQSLTLVFVETKKGADALEHWLYMN------GFPATTIHGD--------RTQQERELALRSFKSGKTPILVATDVAA 462 (606)
Q Consensus 397 ~~~~~~~~LVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~--------~~~~~R~~~l~~F~~g~~~iLVaT~v~~ 462 (606)
.+..++||||++++.++.|+++|... ++.+..+||+ |++.+|.+++++|++|+.+|||||++++
T Consensus 398 --~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~ 475 (699)
T 4gl2_A 398 --EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAE 475 (699)
T ss_dssp --SSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCC
T ss_pred --CCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Confidence 11578999999999999999999987 8999999999 9999999999999999999999999999
Q ss_pred cCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccC
Q 007368 463 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN 508 (606)
Q Consensus 463 ~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~ 508 (606)
+|||+|+|++||+||+|+|+..|+||+||++|. |.+++|+...
T Consensus 476 ~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~ 518 (699)
T 4gl2_A 476 EGLDIKECNIVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHS 518 (699)
T ss_dssp TTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEES
T ss_pred cCCccccCCEEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeC
Confidence 999999999999999999999999999997654 3555555543
No 36
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.4e-44 Score=397.85 Aligned_cols=324 Identities=17% Similarity=0.157 Sum_probs=242.1
Q ss_pred CCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEE
Q 007368 147 IDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALIL 226 (606)
Q Consensus 147 ~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil 226 (606)
+.+++.+.+.|... +.+++|+|+++++.+++++++|++|+||||||++|++|++..+... ++++|||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------~~~vLvl 221 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR------------RLRTLIL 221 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCeEEEE
Confidence 44555555444432 4779999999999999999999999999999999999999888653 2459999
Q ss_pred ccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEeccccc
Q 007368 227 APTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 306 (606)
Q Consensus 227 ~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~ 306 (606)
+|||+||.|+++.++.+ .+. +..... . .....+..|.++|.+.|...+... ..+.++++|||||||+|
T Consensus 222 ~PtreLa~Qi~~~l~~~------~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 222 APTRVVAAEMEEALRGL------PIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp ESSHHHHHHHHHHTTTS------CEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC
T ss_pred cChHHHHHHHHHHhcCC------cee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC
Confidence 99999999999888642 222 111110 0 001123467788999888776655 35899999999999998
Q ss_pred ccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHH
Q 007368 307 LDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLM 386 (606)
Q Consensus 307 ~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 386 (606)
+++|...+..++..+. ...+|+|+||||++..+..++. .++..+.+... ++ ..+...++
T Consensus 290 -~~~~~~~~~~i~~~l~---~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~-~~~~~~ll 348 (618)
T 2whx_A 290 -DPCSVAARGYISTRVE---MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IP-ERSWNTGF 348 (618)
T ss_dssp -SHHHHHHHHHHHHHHH---HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CC-SSCCSSSC
T ss_pred -CccHHHHHHHHHHHhc---ccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CC-HHHHHHHH
Confidence 7778888888887762 2578999999999876442222 12222222110 01 11222233
Q ss_pred HHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCC
Q 007368 387 DLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLD 466 (606)
Q Consensus 387 ~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlD 466 (606)
+.+.+ . ..++||||++++.|+.+++.|+..++.+..+|++ +|+++++.|++|+.+|||||+++++|||
T Consensus 349 ~~l~~---~-----~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiD 416 (618)
T 2whx_A 349 DWITD---Y-----QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGAN 416 (618)
T ss_dssp HHHHH---C-----CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCC
T ss_pred HHHHh---C-----CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcc
Confidence 33332 1 5579999999999999999999999999999984 7888999999999999999999999999
Q ss_pred CCCccEE--------------------EEecCCCCHhHHHHHhhccccCCC-cceEEEEec---cCChhhHHHHHHHHHH
Q 007368 467 IPHVAHV--------------------VNFDLPNDIDDYVHRIGRTGRAGK-SGLATAFFN---ENNLSLARPLAELMQE 522 (606)
Q Consensus 467 ip~v~~V--------------------I~~d~p~s~~~y~QRiGR~gR~g~-~G~~~~~~~---~~~~~~~~~l~~~l~~ 522 (606)
|| |++| |+||.|.+.++|+||+|||||.|. +|.|++|++ +.+...+..+.+.+..
T Consensus 417 i~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l 495 (618)
T 2whx_A 417 FR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLL 495 (618)
T ss_dssp CC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHH
T ss_pred cC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhcc
Confidence 97 8888 888889999999999999999965 899999998 7888888888887766
Q ss_pred hcCcccH
Q 007368 523 SNQEVPA 529 (606)
Q Consensus 523 ~~q~vp~ 529 (606)
...++|.
T Consensus 496 ~~~~~~~ 502 (618)
T 2whx_A 496 DNIYTPE 502 (618)
T ss_dssp TTCCCTT
T ss_pred ccccCCc
Confidence 5555543
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.2e-41 Score=396.53 Aligned_cols=306 Identities=20% Similarity=0.276 Sum_probs=236.9
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
+|+|+|.++|+.++++++++++||||||||++|+++++..+.. ++++||++||++|+.|+++.++++
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-------------g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-------------MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-------------TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999998765432 246999999999999999999986
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcC
Q 007368 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 323 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~ 323 (606)
.. ++++..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.+++|...+..++..+
T Consensus 106 ~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l- 175 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML- 175 (997)
T ss_dssp C----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS-
T ss_pred cC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhc-
Confidence 43 57788888877533 347999999999999998887788999999999999999999999999999988
Q ss_pred CCCCCCceEEEEeccChHHHHHHHHHhh---cCcEEEEeccccCccCceeEEE-------EEe-----------------
Q 007368 324 MPPPGVRQTMLFSATFPKEIQKLASDFL---ANYVFLAVGRVGSSTDLIVQRV-------EYV----------------- 376 (606)
Q Consensus 324 ~~~~~~~q~ll~SAT~~~~i~~l~~~~l---~~~~~~~~~~~~~~~~~i~~~~-------~~~----------------- 376 (606)
+...|+|+||||+++.. .++..+. ...+.+...... ...+.+.+ ..+
T Consensus 176 ---~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (997)
T 4a4z_A 176 ---PQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEI 249 (997)
T ss_dssp ---CTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHH
T ss_pred ---ccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHH
Confidence 67889999999997653 3333322 122222111111 01111111 000
Q ss_pred ---------------------------------------------------------------------ccchhhhHHHH
Q 007368 377 ---------------------------------------------------------------------HESDKRSHLMD 387 (606)
Q Consensus 377 ---------------------------------------------------------------------~~~~k~~~l~~ 387 (606)
....+...+++
T Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (997)
T 4a4z_A 250 LNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVN 329 (997)
T ss_dssp HC-----------------------------------------------------------------CCCCTTHHHHHHH
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 01111222333
Q ss_pred HHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCC---------------------------------------Cc
Q 007368 388 LLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGF---------------------------------------PA 428 (606)
Q Consensus 388 ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~---------------------------------------~~ 428 (606)
.+.. ....++||||++++.|+.++..|...++ .+
T Consensus 330 ~l~~-------~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 330 YLRK-------RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHH-------TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHh-------CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 3322 1256899999999999999999977655 46
Q ss_pred EEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCC---------CHhHHHHHhhccccCC--C
Q 007368 429 TTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN---------DIDDYVHRIGRTGRAG--K 497 (606)
Q Consensus 429 ~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~---------s~~~y~QRiGR~gR~g--~ 497 (606)
..+|++|++.+|+.+++.|+.|.++|||||+++++|||+|+ ..||+++.|. ++.+|+||+|||||.| .
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 89999999999999999999999999999999999999999 5555555544 9999999999999998 5
Q ss_pred cceEEEEec
Q 007368 498 SGLATAFFN 506 (606)
Q Consensus 498 ~G~~~~~~~ 506 (606)
.|.|++++.
T Consensus 482 ~G~vi~l~~ 490 (997)
T 4a4z_A 482 TGTVIVMAY 490 (997)
T ss_dssp SEEEEEECC
T ss_pred ceEEEEecC
Confidence 688888873
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-42 Score=390.34 Aligned_cols=334 Identities=18% Similarity=0.231 Sum_probs=248.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHhHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEE
Q 007368 151 EELNLNIRRCKYVKPTPVQRHAIPISVAG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLAL 224 (606)
Q Consensus 151 ~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~------~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~L 224 (606)
+.+.+.+...+| +||++|+++|+.++++ +++|++++||||||++|++|++..+... .++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-------------~qvl 421 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-------------FQTA 421 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-------------SCEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-------------CeEE
Confidence 445556677888 8999999999998875 5999999999999999999999877532 3499
Q ss_pred EEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHH---HHHHhcC-CcEEEecHHHHHHHHHhccccccceeEEEE
Q 007368 225 ILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQ---LRELERG-VDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 225 il~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
|++||++||.|+++.++++....++++..++|+....+. +..+..+ ++|+|+||+.|.+ .+.+.++++||+
T Consensus 422 vlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 422 FMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 999999999999999999988888999999999876553 3444554 8999999987754 456889999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccch
Q 007368 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESD 380 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 380 (606)
||+|++.... +. .+... ....++++||||+......+. +..+.....+.........+.. .+....
T Consensus 497 DEaHr~g~~q-----r~---~l~~~-~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~---~~~~~~ 562 (780)
T 1gm5_A 497 DEQHRFGVKQ-----RE---ALMNK-GKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQT---MLVPMD 562 (780)
T ss_dssp ESCCCC----------C---CCCSS-SSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEE---CCCCSS
T ss_pred cccchhhHHH-----HH---HHHHh-CCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEE---EEeccc
Confidence 9999963221 11 11111 245789999999766443332 2332211122221111122221 222334
Q ss_pred hhhHHHHHHHHHHhcccCCCCceEEEEEcch--------hhHHHHHHHHHh---CCCCcEEeeCccCHHHHHHHHHhccC
Q 007368 381 KRSHLMDLLHAQVANGVHGKQSLTLVFVETK--------KGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKS 449 (606)
Q Consensus 381 k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~--------~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~ 449 (606)
+...+.+.+...... ..+++|||++. ..++.+++.|.. .++.+..+||+|++.+|+.+++.|++
T Consensus 563 ~~~~l~~~i~~~l~~-----g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~ 637 (780)
T 1gm5_A 563 RVNEVYEFVRQEVMR-----GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE 637 (780)
T ss_dssp THHHHHHHHHHHTTT-----SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhc-----CCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 455666666655432 56799999965 457888888887 47889999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEecCCC-CHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHh
Q 007368 450 GKTPILVATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQES 523 (606)
Q Consensus 450 g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~ 523 (606)
|+++|||||+++++|||+|++++||+++.|. +...|+||+||+||.|++|.|++++++.+... ....+.+++.
T Consensus 638 G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~-~~rl~~l~~~ 711 (780)
T 1gm5_A 638 GRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEA-MERLRFFTLN 711 (780)
T ss_dssp TSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHH-HHHHHHHHTC
T ss_pred CCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHH-HHHHHHHHhh
Confidence 9999999999999999999999999999996 78999999999999999999999998443333 3333444443
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.2e-42 Score=372.81 Aligned_cols=312 Identities=16% Similarity=0.137 Sum_probs=226.1
Q ss_pred CCCCCCHHHHhHHHHHhcCCCE-EEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007368 161 KYVKPTPVQRHAIPISVAGRDL-MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 161 ~~~~p~~~Q~~ai~~i~~~~d~-li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
|+.+|+|+|+ +||.+++++++ |+++|||||||++|++|++..+.... +++||++||++||.|+++.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~------------~~~lvl~Ptr~La~Q~~~~ 67 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR------------LRTLILAPTRVVAAEMEEA 67 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT------------CCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC------------CcEEEECCCHHHHHHHHHH
Confidence 4678999985 79999999887 99999999999999999998776532 4599999999999999998
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHH
Q 007368 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~ 319 (606)
+..+ .+......... ....+..|.++|++.|.+.+.+. ..+.++++|||||||++ +..+...+..+.
T Consensus 68 l~g~------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~ 134 (451)
T 2jlq_A 68 LRGL------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIS 134 (451)
T ss_dssp TTTS------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHH
T ss_pred hcCc------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHH
Confidence 8632 22211111100 11234579999999998888655 45889999999999987 444444433333
Q ss_pred HhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCC
Q 007368 320 QQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHG 399 (606)
Q Consensus 320 ~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~ 399 (606)
.... .+..|+++||||++..+.. .+..++.++.+..... ......+.+.+..
T Consensus 135 ~~~~---~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~p--------------~~~~~~~~~~l~~-------- 186 (451)
T 2jlq_A 135 TRVE---MGEAAAIFMTATPPGSTDP---FPQSNSPIEDIEREIP--------------ERSWNTGFDWITD-------- 186 (451)
T ss_dssp HHHH---TTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECCCC--------------SSCCSSSCHHHHH--------
T ss_pred Hhhc---CCCceEEEEccCCCccchh---hhcCCCceEecCccCC--------------chhhHHHHHHHHh--------
Confidence 3221 3568999999999874332 1222333332221100 0001112223322
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEec--
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFD-- 477 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d-- 477 (606)
...++||||++++.++.+++.|+..++.+..+|+++. +++++.|++|+.+|||||+++++|||||+ ++|||||
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 1457999999999999999999999999999999754 57899999999999999999999999999 9999999
Q ss_pred ------------------CCCCHhHHHHHhhccccCCC-cceEEEEeccCC---hhhHHHHHHHHHHhcCcccHHH
Q 007368 478 ------------------LPNDIDDYVHRIGRTGRAGK-SGLATAFFNENN---LSLARPLAELMQESNQEVPAWL 531 (606)
Q Consensus 478 ------------------~p~s~~~y~QRiGR~gR~g~-~G~~~~~~~~~~---~~~~~~l~~~l~~~~q~vp~~L 531 (606)
.|.+.++|+||+|||||.|+ +|.|++|+...+ ..+...+...+.....++|.++
T Consensus 262 ~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred ccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999999999998 899988875432 2333333444555566676555
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7.8e-40 Score=386.75 Aligned_cols=323 Identities=18% Similarity=0.188 Sum_probs=247.8
Q ss_pred CCCHHHHHHHH-hCCCCCCCHHHHhHHHHHhc----CC--CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007368 148 DLGEELNLNIR-RCKYVKPTPVQRHAIPISVA----GR--DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 148 ~l~~~l~~~l~-~~~~~~p~~~Q~~ai~~i~~----~~--d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
.++..+.+.+. .++| +|||+|.++|+.++. ++ ++|++++||+|||++|+++++..+.. +
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-------------g 652 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-------------H 652 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-------------T
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-------------C
Confidence 34444444443 4455 579999999999886 55 99999999999999999888765532 2
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHH---HHHHhc-CCcEEEecHHHHHHHHHhcccccccee
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
+++|||+||++||.|+++.++++....++++..+++.....++ +..+.. .++|+|+||+.|. ..+.+.+++
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~ 727 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLG 727 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccc
Confidence 3699999999999999999998877778888888776654443 344555 4899999997663 345689999
Q ss_pred EEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEe
Q 007368 297 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYV 376 (606)
Q Consensus 297 ~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 376 (606)
+||+||||++ ......++..+ ....++++||||+++....+....+.+...+... ......+...+..
T Consensus 728 lvIiDEaH~~-----g~~~~~~l~~l----~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~- 795 (1151)
T 2eyq_A 728 LLIVDEEHRF-----GVRHKERIKAM----RANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVRE- 795 (1151)
T ss_dssp EEEEESGGGS-----CHHHHHHHHHH----HTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEE-
T ss_pred eEEEechHhc-----ChHHHHHHHHh----cCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEec-
Confidence 9999999994 34455666666 4567999999998766666665555554333221 1111223332222
Q ss_pred ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhccCCCCcE
Q 007368 377 HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPI 454 (606)
Q Consensus 377 ~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~i 454 (606)
..+ ..+.+.+..... ...++||||++++.++.+++.|+.. ++.+..+||+|++.+|++++++|++|+++|
T Consensus 796 --~~~-~~i~~~il~~l~-----~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~V 867 (1151)
T 2eyq_A 796 --YDS-MVVREAILREIL-----RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNV 867 (1151)
T ss_dssp --CCH-HHHHHHHHHHHT-----TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCE
T ss_pred --CCH-HHHHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcE
Confidence 222 223333333322 2678999999999999999999887 789999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEecC-CCCHhHHHHHhhccccCCCcceEEEEeccCC
Q 007368 455 LVATDVAARGLDIPHVAHVVNFDL-PNDIDDYVHRIGRTGRAGKSGLATAFFNENN 509 (606)
Q Consensus 455 LVaT~v~~~GlDip~v~~VI~~d~-p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~ 509 (606)
||||+++++|||||++++||+++. +.++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 868 LVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 868 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp EEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred EEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999999999999998 5799999999999999999999999987643
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.6e-40 Score=399.09 Aligned_cols=350 Identities=17% Similarity=0.200 Sum_probs=256.5
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEc
Q 007368 149 LGEELNLNIRRCKYVKPTPVQRHAIPISVA-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILA 227 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~-~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~ 227 (606)
|.....+.+...+|..++|+|.++++.++. +++++++||||||||++|.+||+..+.+.. +.++|||+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----------~~kavyi~ 979 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----------EGRCVYIT 979 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----------TCCEEEEC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----------CCEEEEEc
Confidence 445666777777899999999999999876 578999999999999999999999887542 12499999
Q ss_pred cchHHHHHHHHHHHH-hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcc--ccccceeEEEEeccc
Q 007368 228 PTRELSSQIHDEAKK-FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEAD 304 (606)
Q Consensus 228 Ptr~La~Qi~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah 304 (606)
|+++||.|+++++++ |....++++..++|+...... ....++|+||||++|..++.+.. ..++++++||+||+|
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 999999999999865 666678999988887653322 22357999999999988876532 357899999999999
Q ss_pred ccccCCCHHHHHHHHHhcC---CCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchh
Q 007368 305 RMLDMGFEPQIRKIVQQMD---MPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDK 381 (606)
Q Consensus 305 ~~~~~gf~~~i~~i~~~l~---~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k 381 (606)
++.+. +...++.++..+. ...+...|+|+||||+++. ..+++.+-.+...+...........+...+........
T Consensus 1057 ~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~ 1134 (1724)
T 4f92_B 1057 LIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT 1134 (1724)
T ss_dssp GGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSH
T ss_pred hcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCc
Confidence 88774 6677766665442 1225678999999999863 44554432222111111111112223333333333332
Q ss_pred hhHHH---HHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC----------------------------------
Q 007368 382 RSHLM---DLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN---------------------------------- 424 (606)
Q Consensus 382 ~~~l~---~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~---------------------------------- 424 (606)
...+. ..+...... .....++||||++++.|+.++..|...
T Consensus 1135 ~~~~~~~~~~~~~~i~~--~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1135 QTRLLSMAKPVYHAITK--HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp HHHHHTTHHHHHHHHHH--HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhhhcchHHHHHHH--hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHH
Confidence 22222 222222211 123678999999999999888766311
Q ss_pred CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE----e------cCCCCHhHHHHHhhcccc
Q 007368 425 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----F------DLPNDIDDYVHRIGRTGR 494 (606)
Q Consensus 425 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~----~------d~p~s~~~y~QRiGR~gR 494 (606)
...+..+|++|++.+|..+++.|++|.++|||||+++++|||+|.+.+||. | ..|.++.+|+||+|||||
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 245788999999999999999999999999999999999999999999983 3 236789999999999999
Q ss_pred CCC--cceEEEEeccCChhhHHHH
Q 007368 495 AGK--SGLATAFFNENNLSLARPL 516 (606)
Q Consensus 495 ~g~--~G~~~~~~~~~~~~~~~~l 516 (606)
.|. .|.|++|+...+...++.+
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCceEEEEEecchHHHHHHHH
Confidence 987 6999999988777665554
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.9e-41 Score=370.83 Aligned_cols=313 Identities=16% Similarity=0.158 Sum_probs=236.1
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007368 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
.+|+|+|.++++.++++++++++++||+|||++|+++++..+...+ +++|||+||++|+.||++++++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS------------SEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC------------CeEEEEECcHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999998887664321 2599999999999999999999
Q ss_pred hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhc
Q 007368 243 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 243 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
+.....+++..++++.....+ +...++|+|+||+.|... ....+.++++||+||||++.. ..+..++..+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~ 249 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC
T ss_pred hhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc
Confidence 876666788888888765543 345689999999976542 334678899999999999876 5677777776
Q ss_pred CCCCCCCceEEEEeccChHHHHHHHH-HhhcCcEEEEeccccC-----ccCc-eeEEEEEec------------------
Q 007368 323 DMPPPGVRQTMLFSATFPKEIQKLAS-DFLANYVFLAVGRVGS-----STDL-IVQRVEYVH------------------ 377 (606)
Q Consensus 323 ~~~~~~~~q~ll~SAT~~~~i~~l~~-~~l~~~~~~~~~~~~~-----~~~~-i~~~~~~~~------------------ 377 (606)
....++++||||++.....+.. ..+.++..+.+..... ..+. +........
T Consensus 250 ----~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (510)
T 2oca_A 250 ----NNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKI 325 (510)
T ss_dssp ----TTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHH
T ss_pred ----ccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHH
Confidence 4567899999999765433221 1122333222211110 0010 111111111
Q ss_pred ---cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcE
Q 007368 378 ---ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPI 454 (606)
Q Consensus 378 ---~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~i 454 (606)
...+...+.+++..... ....++||||+ .++++.|++.|...+..+..+||+|++.+|+++++.|++|+.+|
T Consensus 326 ~~~~~~~~~~l~~~l~~~~~----~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~v 400 (510)
T 2oca_A 326 ITGLSKRNKWIAKLAIKLAQ----KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGII 400 (510)
T ss_dssp HHTCHHHHHHHHHHHHHHHT----TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCE
T ss_pred HhccHHHHHHHHHHHHHHHh----cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCE
Confidence 11122334444444332 22556677777 88899999999998889999999999999999999999999999
Q ss_pred EEEc-cccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEec
Q 007368 455 LVAT-DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 506 (606)
Q Consensus 455 LVaT-~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~ 506 (606)
|||| +++++|||+|++++||++++|+++.+|+||+||+||.|+.+.++++++
T Consensus 401 Lv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 401 IVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999 999999999999999999999999999999999999998875666655
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.6e-42 Score=368.11 Aligned_cols=289 Identities=21% Similarity=0.219 Sum_probs=204.3
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEE
Q 007368 175 ISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVA 254 (606)
Q Consensus 175 ~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~ 254 (606)
++++++++|+++|||||||++|++|++..+.... +++||++||++||.|+++.++.+ .+. .
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~------------~~~lil~Ptr~La~Q~~~~l~~~----~v~--~- 64 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR------------LRTLVLAPTRVVLSEMKEAFHGL----DVK--F- 64 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT------------CCEEEEESSHHHHHHHHHHTTTS----CEE--E-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC------------CeEEEEcchHHHHHHHHHHHhcC----CeE--E-
Confidence 4678899999999999999999999998776532 45999999999999999988854 222 1
Q ss_pred ECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc--------cccccceeEEEEecccccccCCCHHHHHHHHHhcCCCC
Q 007368 255 YGGAPINQQLRELERGVDILVATPGRLVDLLERA--------RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPP 326 (606)
Q Consensus 255 ~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~--------~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~ 326 (606)
..+.- -.|+||+++++++... ...+.++++||+||||++ +..+...+..+...+.
T Consensus 65 ~~~~~-------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~--- 127 (440)
T 1yks_A 65 HTQAF-------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR--- 127 (440)
T ss_dssp ESSCC-------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH---
T ss_pred ecccc-------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc---
Confidence 11110 0356665554333222 234789999999999998 4434333333333331
Q ss_pred CCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEE
Q 007368 327 PGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLV 406 (606)
Q Consensus 327 ~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LV 406 (606)
+...|+++||||++..+..++.. ..+ +......+.... ...++..+.+. ..++||
T Consensus 128 ~~~~~~l~~SAT~~~~~~~~~~~--~~~--------------~~~~~~~~~~~~-~~~~~~~l~~~--------~~~~lV 182 (440)
T 1yks_A 128 ANESATILMTATPPGTSDEFPHS--NGE--------------IEDVQTDIPSEP-WNTGHDWILAD--------KRPTAW 182 (440)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSSC-CSSSCHHHHHC--------CSCEEE
T ss_pred cCCceEEEEeCCCCchhhhhhhc--CCC--------------eeEeeeccChHH-HHHHHHHHHhc--------CCCEEE
Confidence 35689999999998754322221 011 111111111111 12222333221 567999
Q ss_pred EEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE-----------
Q 007368 407 FVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----------- 475 (606)
Q Consensus 407 F~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~----------- 475 (606)
||++++.++.+++.|+..++++..+|| .+|+++++.|++|+.+|||||+++++||||| +++||+
T Consensus 183 F~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~ 257 (440)
T 1yks_A 183 FLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVD 257 (440)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEET
T ss_pred EeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecc
Confidence 999999999999999999999999999 4688999999999999999999999999999 999996
Q ss_pred --------ecCCCCHhHHHHHhhccccC-CCcceEEEEe---ccCChhhHHHHHHHHHHhcCcccH
Q 007368 476 --------FDLPNDIDDYVHRIGRTGRA-GKSGLATAFF---NENNLSLARPLAELMQESNQEVPA 529 (606)
Q Consensus 476 --------~d~p~s~~~y~QRiGR~gR~-g~~G~~~~~~---~~~~~~~~~~l~~~l~~~~q~vp~ 529 (606)
|+.|.+.++|+||+||+||. +++|.|++|+ ++.+...+..+.+.+.....++|.
T Consensus 258 ~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 258 EGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp TTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred cccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 89999999999999999998 6899999997 678888888888877766666654
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.3e-41 Score=369.89 Aligned_cols=279 Identities=19% Similarity=0.181 Sum_probs=213.0
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.++++|+++++.+..+++++++||||||||++|++|+++. +.++||++|||+||.|+++.+.+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------------g~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------------GYKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------------TCCEEEEESCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------------CCeEEEEcchHHHHHHHHHHHHHH
Confidence 4567777777778888999999999999999999988751 124999999999999999987765
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcC
Q 007368 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 323 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~ 323 (606)
. +..+...+++.. +..+++|+|+||++| +.+..+.++++++||||||| +++++|...+..|++.+
T Consensus 281 ~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l- 345 (666)
T 3o8b_A 281 H---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQA- 345 (666)
T ss_dssp H---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHT-
T ss_pred h---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhh-
Confidence 3 445556666654 345689999999998 45666778899999999996 67778888899999888
Q ss_pred CCCCCCce--EEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCC
Q 007368 324 MPPPGVRQ--TMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQ 401 (606)
Q Consensus 324 ~~~~~~~q--~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~ 401 (606)
+..+| +++||||++..+. ...+....+... .... +......... . ..+.
T Consensus 346 ---~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~---~~~~---i~~~~~~~~l-----------~---~~~~ 396 (666)
T 3o8b_A 346 ---ETAGARLVVLATATPPGSVT------VPHPNIEEVALS---NTGE---IPFYGKAIPI-----------E---AIRG 396 (666)
T ss_dssp ---TTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB---SCSS---EEETTEEECG-----------G---GSSS
T ss_pred ---hhcCCceEEEECCCCCcccc------cCCcceEEEeec---ccch---hHHHHhhhhh-----------h---hccC
Confidence 44444 6778999987321 011111111000 0000 0111000000 0 1136
Q ss_pred ceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEE-------
Q 007368 402 SLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVV------- 474 (606)
Q Consensus 402 ~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI------- 474 (606)
.++||||++++.++.+++.|+..++.+..+||+|++.+ |+++..+|||||+++++||||| |++||
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~ 468 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVT 468 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccc
Confidence 78999999999999999999999999999999999875 5567779999999999999997 99988
Q ss_pred ---Eec-----------CCCCHhHHHHHhhccccCCCcceEEEEeccCChhh
Q 007368 475 ---NFD-----------LPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSL 512 (606)
Q Consensus 475 ---~~d-----------~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~ 512 (606)
||| .|.+.++|+||+||||| +++|. +.|+++.+...
T Consensus 469 ~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 469 QTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 777 89999999999999999 89999 99999877654
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.3e-39 Score=370.68 Aligned_cols=339 Identities=16% Similarity=0.176 Sum_probs=247.5
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCc
Q 007368 139 PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVA-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR 217 (606)
Q Consensus 139 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~-~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 217 (606)
.++..|+++++++.+.+.++..+ ..|+++|+++|+.++. +++++++||||||||+ ++|++.. ..... .
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~--~~~~~------~ 137 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVL--FDEMP------H 137 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHH--HHHCG------G
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHH--Hhccc------c
Confidence 34667999999999999998877 6899999999987765 5789999999999999 5666622 11110 0
Q ss_pred ccCcEEEEEccchHHHHHHHHHHHHhhh-cCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcccccccee
Q 007368 218 TVYPLALILAPTRELSSQIHDEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 218 ~~~p~~Lil~Ptr~La~Qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
..++.++|++|+++|+.|+++.+..... ..+..+........ .....++|+|+||++|.+.+.... .+.+++
T Consensus 138 ~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~ 210 (773)
T 2xau_A 138 LENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMEDH-DLSRYS 210 (773)
T ss_dssp GGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHST-TCTTEE
T ss_pred CCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhCc-cccCCC
Confidence 1235699999999999999987765431 11222211111111 012357999999999998887654 589999
Q ss_pred EEEEecccc-cccCCCH-HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEE
Q 007368 297 YLALDEADR-MLDMGFE-PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVE 374 (606)
Q Consensus 297 ~lVlDEah~-~~~~gf~-~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 374 (606)
+|||||+|. +++..+. ..+..+.... +..|+|+||||++. ..+. .++.+...+.+... ...+.+.+.
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~~~-----~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr---~~pv~~~~~ 279 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVKRR-----PDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGR---TYPVELYYT 279 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHHHC-----TTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCC---CCCEEEECC
T ss_pred EEEecCccccccchHHHHHHHHHHHHhC-----CCceEEEEeccccH--HHHH-HHhcCCCcccccCc---ccceEEEEe
Confidence 999999995 6664322 2334444332 46799999999964 3344 44554433333221 123444333
Q ss_pred EeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHh-----------CCCCcEEeeCccCHHHHHHH
Q 007368 375 YVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYM-----------NGFPATTIHGDRTQQERELA 443 (606)
Q Consensus 375 ~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~-----------~~~~~~~lhg~~~~~~R~~~ 443 (606)
.....++...++..+....... ..+++||||+++++++.+++.|.. .++.+..+||+|++.+|..+
T Consensus 280 ~~~~~~~~~~~l~~l~~~~~~~---~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v 356 (773)
T 2xau_A 280 PEFQRDYLDSAIRTVLQIHATE---EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRI 356 (773)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHS---CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGG
T ss_pred cCCchhHHHHHHHHHHHHHHhc---CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHH
Confidence 3334444444444444433221 267899999999999999999975 57889999999999999999
Q ss_pred HHhcc-----CCCCcEEEEccccccCCCCCCccEEEEecC------------------CCCHhHHHHHhhccccCCCcce
Q 007368 444 LRSFK-----SGKTPILVATDVAARGLDIPHVAHVVNFDL------------------PNDIDDYVHRIGRTGRAGKSGL 500 (606)
Q Consensus 444 l~~F~-----~g~~~iLVaT~v~~~GlDip~v~~VI~~d~------------------p~s~~~y~QRiGR~gR~g~~G~ 500 (606)
++.|+ +|..+|||||+++++|||||+|++||++++ |.+.++|+||+|||||. .+|.
T Consensus 357 ~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~ 435 (773)
T 2xau_A 357 FEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGK 435 (773)
T ss_dssp GSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEE
T ss_pred HhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCE
Confidence 99999 999999999999999999999999999887 88999999999999999 8999
Q ss_pred EEEEeccCCh
Q 007368 501 ATAFFNENNL 510 (606)
Q Consensus 501 ~~~~~~~~~~ 510 (606)
|+.|+++.+.
T Consensus 436 ~~~l~~~~~~ 445 (773)
T 2xau_A 436 CFRLYTEEAF 445 (773)
T ss_dssp EEESSCHHHH
T ss_pred EEEEecHHHh
Confidence 9999986543
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=9.5e-41 Score=373.27 Aligned_cols=307 Identities=17% Similarity=0.212 Sum_probs=218.7
Q ss_pred CCCHHHH-----hHHHHHh------cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHH
Q 007368 164 KPTPVQR-----HAIPISV------AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTREL 232 (606)
Q Consensus 164 ~p~~~Q~-----~ai~~i~------~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~L 232 (606)
.||++|+ ++||.++ .++++|++|+||||||++|++|++..+.... +++|||+||++|
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~------------~~~lilaPTr~L 282 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR------------LRTAVLAPTRVV 282 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT------------CCEEEEESSHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC------------CcEEEEccHHHH
Confidence 8999999 9999888 8999999999999999999999998876432 459999999999
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCH
Q 007368 233 SSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFE 312 (606)
Q Consensus 233 a~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~ 312 (606)
|.|+++.++.+ ++.. ...... ..-..+.-+-+.+.+.+...+... ..+.++++|||||||++ +..+.
T Consensus 283 a~Q~~~~l~~~----~i~~----~~~~l~---~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~ 349 (673)
T 2wv9_A 283 AAEMAEALRGL----PVRY----LTPAVQ---REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASI 349 (673)
T ss_dssp HHHHHHHTTTS----CCEE----CCC------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHH
T ss_pred HHHHHHHHhcC----Ceee----eccccc---ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHH
Confidence 99999988865 2221 100000 000112234555666665555443 46889999999999998 22222
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHH
Q 007368 313 PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQ 392 (606)
Q Consensus 313 ~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 392 (606)
..+..+...+. +..+|+|+||||++..+..+... ..+ +......+... +...++..+.+
T Consensus 350 ~~~~~l~~~~~---~~~~~vl~~SAT~~~~i~~~~~~--~~~--------------i~~v~~~~~~~-~~~~~l~~l~~- 408 (673)
T 2wv9_A 350 AARGYIATRVE---AGEAAAIFMTATPPGTSDPFPDT--NSP--------------VHDVSSEIPDR-AWSSGFEWITD- 408 (673)
T ss_dssp HHHHHHHHHHH---TTSCEEEEECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSS-CCSSCCHHHHS-
T ss_pred HHHHHHHHhcc---ccCCcEEEEcCCCChhhhhhccc--CCc--------------eEEEeeecCHH-HHHHHHHHHHh-
Confidence 33333333331 25689999999998653322110 011 11100011111 11222222221
Q ss_pred HhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccE
Q 007368 393 VANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAH 472 (606)
Q Consensus 393 ~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~ 472 (606)
...++||||++++.++.+++.|+..++.+..+||+ +|+++++.|++|+.+|||||+++++||||| +++
T Consensus 409 -------~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 409 -------YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp -------CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred -------CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 26679999999999999999999999999999994 899999999999999999999999999999 999
Q ss_pred EEE--------------------ecCCCCHhHHHHHhhccccC-CCcceEEEEe---ccCChhhHHHHHHHHHHhcCccc
Q 007368 473 VVN--------------------FDLPNDIDDYVHRIGRTGRA-GKSGLATAFF---NENNLSLARPLAELMQESNQEVP 528 (606)
Q Consensus 473 VI~--------------------~d~p~s~~~y~QRiGR~gR~-g~~G~~~~~~---~~~~~~~~~~l~~~l~~~~q~vp 528 (606)
||+ ||+|.++++|+||+||+||. +++|.|++|+ ++.+..++..+...+.....+++
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBT
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCC
Confidence 998 67999999999999999999 7899999996 56777777777666544333333
No 47
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.6e-39 Score=389.56 Aligned_cols=344 Identities=19% Similarity=0.257 Sum_probs=252.5
Q ss_pred CCCCCCHHHHhHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007368 161 KYVKPTPVQRHAIPISVA-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 161 ~~~~p~~~Q~~ai~~i~~-~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
+|.+++++|.+++|.++. ++++|++||||||||++|.+||+..+.+...... .....+.++|+|+|+++||.|+++.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~--~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG--TINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTS--SCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccc--cccCCCCEEEEECCHHHHHHHHHHH
Confidence 688999999999998765 6899999999999999999999999876432211 1123456799999999999999999
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcc--ccccceeEEEEecccccccCCCHHHHHH
Q 007368 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRMLDMGFEPQIRK 317 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah~~~~~gf~~~i~~ 317 (606)
+++.....+++|..++|+.....+ ....++|+||||++|..++.+.. ..++++++||+||+|.+.+ .+...++.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 998888889999999998764432 12458999999999876665432 2478999999999997765 56677766
Q ss_pred HHHhcCC---CCCCCceEEEEeccChHHHHHHHHHhhc-Cc---EEEEeccccCccCceeEEEEEeccchh---hhHHHH
Q 007368 318 IVQQMDM---PPPGVRQTMLFSATFPKEIQKLASDFLA-NY---VFLAVGRVGSSTDLIVQRVEYVHESDK---RSHLMD 387 (606)
Q Consensus 318 i~~~l~~---~~~~~~q~ll~SAT~~~~i~~l~~~~l~-~~---~~~~~~~~~~~~~~i~~~~~~~~~~~k---~~~l~~ 387 (606)
++..+.. ..+...|+|+||||+|+ .+.+++ ||. ++ .++ +.. ....-.+.+.+..+..... ...+.+
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~-~~~-~~RPvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFY-FDN-SFRPVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEE-CCG-GGCSSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEE-ECC-CCccCccEEEEeccCCcchhhhhHHHHH
Confidence 6543210 11456799999999986 334444 443 21 121 111 1111223444433333222 222333
Q ss_pred HHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-------------------------------------CCCcEE
Q 007368 388 LLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-------------------------------------GFPATT 430 (606)
Q Consensus 388 ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~ 430 (606)
.+...... .....++||||++++.|+.+++.|.+. ...+..
T Consensus 306 ~~~~~v~~--~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~ 383 (1724)
T 4f92_B 306 IVYEKIME--HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI 383 (1724)
T ss_dssp HHHHHHTT--CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEE
T ss_pred HHHHHHHH--HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEE
Confidence 33333332 223567999999999999888877421 234678
Q ss_pred eeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE----ecC------CCCHhHHHHHhhccccCCC--c
Q 007368 431 IHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FDL------PNDIDDYVHRIGRTGRAGK--S 498 (606)
Q Consensus 431 lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~----~d~------p~s~~~y~QRiGR~gR~g~--~ 498 (606)
+|++|++.+|..+.+.|++|.++|||||++++.|||+|.+++||. ||. |.++.+|.||+|||||.|. .
T Consensus 384 HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~ 463 (1724)
T 4f92_B 384 HHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTK 463 (1724)
T ss_dssp ECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred EcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999995 553 4689999999999999875 6
Q ss_pred ceEEEEeccCChhhHHHH
Q 007368 499 GLATAFFNENNLSLARPL 516 (606)
Q Consensus 499 G~~~~~~~~~~~~~~~~l 516 (606)
|.++++.+..+...+..|
T Consensus 464 G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 464 GEGILITSHGELQYYLSL 481 (1724)
T ss_dssp EEEEEEEESTTCCHHHHH
T ss_pred cEEEEEecchhHHHHHHH
Confidence 999999988776655444
No 48
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3e-39 Score=321.83 Aligned_cols=250 Identities=54% Similarity=0.896 Sum_probs=209.3
Q ss_pred CCcCCCcccccCCCCCCC--CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHH
Q 007368 122 FDAYEDIPVETSGENVPP--PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 122 ~~~~~~~~v~~~~~~~p~--~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llp 199 (606)
|++|+++++.+++...|. ++.+|+++++++.+.++|...+|.+|+|+|.++|+.+++++++++++|||||||++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~ 80 (253)
T 1wrb_A 1 FDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIP 80 (253)
T ss_dssp --CCCCCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CcchhhCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHH
Confidence 577888888888888877 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHH
Q 007368 200 IISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPG 279 (606)
Q Consensus 200 il~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~ 279 (606)
++..+........ ......++++|||+||++|+.|++++++++....++++..++|+.....+...+..+++|+|+||+
T Consensus 81 ~l~~l~~~~~~~~-~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~ 159 (253)
T 1wrb_A 81 IINHLVCQDLNQQ-RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPG 159 (253)
T ss_dssp HHHHHHTTCC-------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHH
T ss_pred HHHHHHhhccccc-cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHH
Confidence 9998875432110 011233467999999999999999999999888889999999999888888888888999999999
Q ss_pred HHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEe
Q 007368 280 RLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359 (606)
Q Consensus 280 ~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~ 359 (606)
+|.+++....+.+.++++||+||||+|++++|...+..++..+..+....+|+++||||++.+++.+++.++.+++.+.+
T Consensus 160 ~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 160 RLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp HHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 99999998888899999999999999999999999999999765443347899999999999999999999999999988
Q ss_pred ccccCccCceeEE
Q 007368 360 GRVGSSTDLIVQR 372 (606)
Q Consensus 360 ~~~~~~~~~i~~~ 372 (606)
.......+.+.|.
T Consensus 240 ~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 240 GRVGSTSDSIKQE 252 (253)
T ss_dssp C------------
T ss_pred CCCCCCcCCceec
Confidence 8776666666654
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.4e-38 Score=313.16 Aligned_cols=225 Identities=45% Similarity=0.777 Sum_probs=205.0
Q ss_pred ccccCCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhh
Q 007368 129 PVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQ 208 (606)
Q Consensus 129 ~v~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~ 208 (606)
.+.+.+...|.++.+|+++++++.+.+.+..++|.+|+|+|+++|+.++.+++++++||||||||++|++|++..+....
T Consensus 16 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~ 95 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP 95 (242)
T ss_dssp TEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC
T ss_pred ceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc
Confidence 45556778899999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred cccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc
Q 007368 209 YVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 288 (606)
Q Consensus 209 ~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~ 288 (606)
.. .+..++++|||+||++|+.|+++.++++....++++..++|+.....+...+..+++|+|+||++|.+++.+.
T Consensus 96 ~~-----~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 170 (242)
T 3fe2_A 96 FL-----ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 170 (242)
T ss_dssp CC-----CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT
T ss_pred cc-----ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 21 1233567999999999999999999999888899999999999999998889899999999999999999988
Q ss_pred cccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccc
Q 007368 289 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRV 362 (606)
Q Consensus 289 ~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~ 362 (606)
...+.++++||+||||+|++++|...+..++..+ +..+|+++||||+|.+++.+++.++.+++.+.+...
T Consensus 171 ~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 171 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI----RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhC----CccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 8889999999999999999999999999999888 667899999999999999999999999999887653
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=8.2e-40 Score=353.33 Aligned_cols=278 Identities=17% Similarity=0.186 Sum_probs=198.5
Q ss_pred HHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcC
Q 007368 168 VQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQT 247 (606)
Q Consensus 168 ~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~ 247 (606)
+|.....++..++++|++||||||||++|++|++..+.... +++||++|||+||.|+++.++.+
T Consensus 10 ~~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~------------~~~lvl~Ptr~La~Q~~~~l~g~---- 73 (459)
T 2z83_A 10 MGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR------------LRTAVLAPTRVVAAEMAEALRGL---- 73 (459)
T ss_dssp -----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT------------CCEEEEECSHHHHHHHHHHTTTS----
T ss_pred HHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC------------CcEEEECchHHHHHHHHHHhcCc----
Confidence 33444455677899999999999999999999998876432 35999999999999999988732
Q ss_pred CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccc-----cccCCCHHHHHHHHHhc
Q 007368 248 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-----MLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 248 ~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~-----~~~~gf~~~i~~i~~~l 322 (606)
.+......... .-..+..|.++|.+.|...+... ..+.++++|||||||+ ++..+|...+. .
T Consensus 74 --~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~----~- 140 (459)
T 2z83_A 74 --PVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV----E- 140 (459)
T ss_dssp --CEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH----H-
T ss_pred --eEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh----c-
Confidence 22211111100 01233467889999988776654 4588999999999998 44443322211 1
Q ss_pred CCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCc
Q 007368 323 DMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQS 402 (606)
Q Consensus 323 ~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~ 402 (606)
....|+++||||++..+..+... ..++.... . .++ ..+...+++++... ..
T Consensus 141 ----~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~-~-------------~~~-~~~~~~~~~~l~~~--------~~ 191 (459)
T 2z83_A 141 ----LGEAAAIFMTATPPGTTDPFPDS--NAPIHDLQ-D-------------EIP-DRAWSSGYEWITEY--------AG 191 (459)
T ss_dssp ----TTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE-C-------------CCC-SSCCSSCCHHHHHC--------CS
T ss_pred ----cCCccEEEEEcCCCcchhhhccC--CCCeEEec-c-------------cCC-cchhHHHHHHHHhc--------CC
Confidence 35689999999998754322111 11221110 0 011 11112222333321 56
Q ss_pred eEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEE-------
Q 007368 403 LTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN------- 475 (606)
Q Consensus 403 ~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~------- 475 (606)
++||||++++.++.+++.|+..++.+..+|++ +|+.+++.|++|+.+|||||+++++|||||+ ++||+
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~ 266 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKP 266 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCE
T ss_pred CEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccc
Confidence 79999999999999999999999999999995 7888999999999999999999999999999 99999
Q ss_pred -------------ecCCCCHhHHHHHhhccccCCC-cceEEEEeccC
Q 007368 476 -------------FDLPNDIDDYVHRIGRTGRAGK-SGLATAFFNEN 508 (606)
Q Consensus 476 -------------~d~p~s~~~y~QRiGR~gR~g~-~G~~~~~~~~~ 508 (606)
||.|.+.++|+||+|||||.|+ +|.|++|++..
T Consensus 267 ~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 267 TILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7899999999999999999997 99999999875
No 51
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=8.4e-40 Score=355.70 Aligned_cols=293 Identities=20% Similarity=0.222 Sum_probs=218.1
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007368 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
.+|+|+|.++++.++.+++++++++||+|||++|+.++... +..+|||+|+++|+.||++++++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------------~~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------------STPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------------CSCEEEEESSHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------------CCCEEEEECCHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999887643 12399999999999999999999
Q ss_pred hhhcCCcE-EEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007368 243 FSYQTGVK-VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 243 ~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
| +++ +.+++++... .++|+|+||+.|...+... ..++++||+||||++.+..|.. ++..
T Consensus 156 ~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~ 215 (472)
T 2fwr_A 156 F----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQM 215 (472)
T ss_dssp G----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHT
T ss_pred C----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHh
Confidence 5 677 7777766542 4799999999998766521 2468999999999999887653 4444
Q ss_pred cCCCCCCCceEEEEeccChH-------------------HHHHHHHHhhcCcEEEEeccccCc-----------------
Q 007368 322 MDMPPPGVRQTMLFSATFPK-------------------EIQKLASDFLANYVFLAVGRVGSS----------------- 365 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT~~~-------------------~i~~l~~~~l~~~~~~~~~~~~~~----------------- 365 (606)
+ ...++++||||+.. ....+...++.++....+...-..
T Consensus 216 ~-----~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (472)
T 2fwr_A 216 S-----IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFL 290 (472)
T ss_dssp C-----CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCS
T ss_pred c-----CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 4 34679999999862 122222222333222111000000
Q ss_pred ---------cCceeEEE---------------------EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHH
Q 007368 366 ---------TDLIVQRV---------------------EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGAD 415 (606)
Q Consensus 366 ---------~~~i~~~~---------------------~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~ 415 (606)
...+.+.+ ..+....|...+.+++.. ....++||||++++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-------~~~~k~lvF~~~~~~~~ 363 (472)
T 2fwr_A 291 RARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-------HRKDKIIIFTRHNELVY 363 (472)
T ss_dssp SSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-------TSSSCBCCBCSCHHHHH
T ss_pred HhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-------CCCCcEEEEECCHHHHH
Confidence 00000000 001123344555555544 13678999999999999
Q ss_pred HHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccC
Q 007368 416 ALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 495 (606)
Q Consensus 416 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~ 495 (606)
.+++.|. +..+|+++++.+|+++++.|++|+++|||||+++++|||+|++++||++|+|+++..|+||+||++|.
T Consensus 364 ~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 438 (472)
T 2fwr_A 364 RISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 438 (472)
T ss_dssp HHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCC
T ss_pred HHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCC
Confidence 9999873 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-c--eEEEEeccC
Q 007368 496 GKS-G--LATAFFNEN 508 (606)
Q Consensus 496 g~~-G--~~~~~~~~~ 508 (606)
|+. + .++.|++..
T Consensus 439 g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 439 SKGKKEAVLYELISRG 454 (472)
T ss_dssp CTTTCCEEEEEEEECS
T ss_pred CCCCceEEEEEEEeCC
Confidence 854 3 344555543
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.8e-37 Score=329.05 Aligned_cols=270 Identities=17% Similarity=0.169 Sum_probs=192.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECC
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGG 257 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg 257 (606)
+++++|+++|||||||++|++|++..+.... +++||++||++||.|+++.++ ++.+....+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g------------~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR------------LRTVILAPTRVVASEMYEALR------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT------------CCEEEEESSHHHHHHHHHHTT------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC------------CCEEEECcHHHHHHHHHHHhC------CCeEEEEecC
Confidence 3689999999999999999999997765432 359999999999999998775 3344443333
Q ss_pred CChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEec
Q 007368 258 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 258 ~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SA 337 (606)
... .-..+..+.++|.+.+...+.. ...+.++++||+||+|++ +..+..++..+..... +...|+|+|||
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~---~~~~~~l~~SA 132 (431)
T 2v6i_A 63 VQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS---MGDAGAIFMTA 132 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH---TTSCEEEEEES
T ss_pred ccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh---CCCCcEEEEeC
Confidence 111 1122456778899998877666 456899999999999997 4334444444444331 35689999999
Q ss_pred cChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHH
Q 007368 338 TFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADAL 417 (606)
Q Consensus 338 T~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l 417 (606)
|++..+..+... ...+......+ ...+...+++.+.+ ...++||||++++.++.+
T Consensus 133 T~~~~~~~~~~~----------------~~~i~~~~~~~-~~~~~~~~~~~l~~--------~~~~~lVF~~~~~~~~~l 187 (431)
T 2v6i_A 133 TPPGTTEAFPPS----------------NSPIIDEETRI-PDKAWNSGYEWITE--------FDGRTVWFVHSIKQGAEI 187 (431)
T ss_dssp SCTTCCCSSCCC----------------SSCCEEEECCC-CSSCCSSCCHHHHS--------CSSCEEEECSSHHHHHHH
T ss_pred CCCcchhhhcCC----------------CCceeeccccC-CHHHHHHHHHHHHc--------CCCCEEEEeCCHHHHHHH
Confidence 998743211110 01111000011 11222233333322 145799999999999999
Q ss_pred HHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccE-----------------EEEecCCC
Q 007368 418 EHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAH-----------------VVNFDLPN 480 (606)
Q Consensus 418 ~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~-----------------VI~~d~p~ 480 (606)
++.|+..++.+..+||+ +|+++++.|++|+.+|||||+++++||||| +.+ ||+++.|.
T Consensus 188 ~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~ 262 (431)
T 2v6i_A 188 GTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAI 262 (431)
T ss_dssp HHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEEC
T ss_pred HHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccC
Confidence 99999999999999997 678899999999999999999999999999 554 67899999
Q ss_pred CHhHHHHHhhccccCCCc-ceEEEEe
Q 007368 481 DIDDYVHRIGRTGRAGKS-GLATAFF 505 (606)
Q Consensus 481 s~~~y~QRiGR~gR~g~~-G~~~~~~ 505 (606)
+.++|+||+||+||.|.. +.+++|.
T Consensus 263 ~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 263 TPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999999999999864 4445544
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=297.36 Aligned_cols=218 Identities=40% Similarity=0.638 Sum_probs=187.1
Q ss_pred CCCCCCCCCCcccc-CCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhccc
Q 007368 133 SGENVPPPVNTFAE-IDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 211 (606)
Q Consensus 133 ~~~~~p~~~~~f~~-~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~ 211 (606)
.....|+|..+|++ +++++.+.+++...+|.+|+|+|+++++.++++++++++||||||||++|++|++..+.......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34567889999999 79999999999999999999999999999999999999999999999999999998876432111
Q ss_pred CCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcccc
Q 007368 212 RPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 291 (606)
Q Consensus 212 ~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~ 291 (606)
....++++||++||++|+.|++++++++. ..++++..++++.....+...+..+++|+|+||++|.+++......
T Consensus 90 ----~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~ 164 (228)
T 3iuy_A 90 ----EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVN 164 (228)
T ss_dssp -------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCC
T ss_pred ----hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcC
Confidence 11235679999999999999999999986 4578899999999888888888889999999999999999888888
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEe
Q 007368 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~ 359 (606)
+.++++||+||||++++++|...+..++..+ +..+|+++||||+|.+++.++..++.+++.+.+
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDV----RPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhC----CcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999999999999999999999999999998 567899999999999999999999999887653
No 54
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.7e-37 Score=343.97 Aligned_cols=309 Identities=18% Similarity=0.206 Sum_probs=190.2
Q ss_pred CCCHHHHhHHHHHhc----C-CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH-
Q 007368 164 KPTPVQRHAIPISVA----G-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH- 237 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~----~-~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~- 237 (606)
.|+|+|.++|+.+++ + ++++++++||||||++++ +++..++....... .....+++|||+||++|+.|+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~~---~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNRT---GDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCSS---CSSSCCCEEEEEC----------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhcccccc---cccCCCeEEEEeCCHHHHHHHHH
Confidence 699999999998876 4 668999999999999865 45555554331110 0112356999999999999999
Q ss_pred HHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh----ccccccceeEEEEecccccccCCCHH
Q 007368 238 DEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER----ARVSLQMIRYLALDEADRMLDMGFEP 313 (606)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~----~~~~l~~~~~lVlDEah~~~~~gf~~ 313 (606)
+.++.|. ..+..+.++ ......+|+|+||++|...+.. ..+....+++||+||||++.... ..
T Consensus 254 ~~~~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 7777763 233333322 1234689999999999887652 23456779999999999987643 35
Q ss_pred HHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcC------------------cEEEEeccccCcc---------
Q 007368 314 QIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLAN------------------YVFLAVGRVGSST--------- 366 (606)
Q Consensus 314 ~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~------------------~~~~~~~~~~~~~--------- 366 (606)
.+..++..+. ..++|+||||+..........++.. +..+.+.......
T Consensus 321 ~~~~il~~~~-----~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 321 NWREILEYFE-----PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp -CHHHHHHST-----TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------
T ss_pred HHHHHHHhCC-----cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccc
Confidence 6677777772 3579999999764322222222222 2222211100000
Q ss_pred ----CceeEEEEEecc-------chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCC--------C
Q 007368 367 ----DLIVQRVEYVHE-------SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGF--------P 427 (606)
Q Consensus 367 ----~~i~~~~~~~~~-------~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~--------~ 427 (606)
..+......... ..+...+.+.+.+.+... ....++||||+++++|+.+++.|...+. .
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~--~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 473 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT--DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDY 473 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH--CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTS
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc--CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCe
Confidence 000000000000 112233333443333221 2357899999999999999999976533 2
Q ss_pred cEEeeCccCHHHHHHHHHhccCCCCc---EEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCC
Q 007368 428 ATTIHGDRTQQERELALRSFKSGKTP---ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 497 (606)
Q Consensus 428 ~~~lhg~~~~~~R~~~l~~F~~g~~~---iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~ 497 (606)
+..+||++++ +|++++++|++++.+ |||||+++++|||+|+|++||++++|+++..|+||+||++|.+.
T Consensus 474 ~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 474 VARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 6789998864 799999999998766 89999999999999999999999999999999999999999875
No 55
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=303.05 Aligned_cols=204 Identities=28% Similarity=0.467 Sum_probs=179.9
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCc
Q 007368 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR 217 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 217 (606)
+..+|++++|++.+.+.|..++|.+||++|.++||.++.+ +|+|++||||||||++|++|++..+...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---------- 159 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---------- 159 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT----------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc----------
Confidence 4678999999999999999999999999999999999998 9999999999999999999999887543
Q ss_pred ccCcEEEEEccchHHHHHHHHHHHHhhhc-CCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh-ccccccce
Q 007368 218 TVYPLALILAPTRELSSQIHDEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMI 295 (606)
Q Consensus 218 ~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~-~~~~l~~~ 295 (606)
..+|++|||+|||+||.|+++.++.+... .++.+.+++++....... ...++|+|+||++|++++.+ ..+.+.++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 23467999999999999999999998764 368888888877643322 34689999999999999976 45678999
Q ss_pred eEEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEec
Q 007368 296 RYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVG 360 (606)
Q Consensus 296 ~~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~ 360 (606)
++|||||||+|++ .+|...+..|+..+ +..+|+++||||++.++..+++.++.+++.+.+.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~----~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTS----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhC----CCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999999999998 68999999998887 6788999999999999999999999999988764
No 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=291.73 Aligned_cols=206 Identities=40% Similarity=0.634 Sum_probs=188.6
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCccc
Q 007368 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTV 219 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 219 (606)
+..+|+++++++.+.+.++.++|.+|+++|+++|+.++.+++++++++||||||++|++|++..+.... .
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~----------~ 110 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP----------Q 110 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----------C
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC----------C
Confidence 456799999999999999999999999999999999999999999999999999999999998887542 1
Q ss_pred CcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHh-ccccccceeEE
Q 007368 220 YPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMIRYL 298 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~-~~~~l~~~~~l 298 (606)
.+++||++||++|+.|++++++++....++++.+++|+.....+...+..+++|+|+||++|.+++.+ ..+.+.++++|
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 34599999999999999999999988888999999999988888888888999999999999999886 44578899999
Q ss_pred EEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEe
Q 007368 299 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359 (606)
Q Consensus 299 VlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~ 359 (606)
|+||||++++++|...+..++..+ +..+|+++||||++.+++.+++.++.+++.+.+
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVI----PRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSS----CSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEcChhhhhccChHHHHHHHHHhC----CCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999887 567899999999999999999999999988765
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.1e-35 Score=293.22 Aligned_cols=211 Identities=34% Similarity=0.528 Sum_probs=177.7
Q ss_pred CCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCC
Q 007368 136 NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 215 (606)
Q Consensus 136 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~ 215 (606)
+.+.+..+|+++++++.+.+.+..++|.+|+++|+++|+.+++++++++++|||||||++|++|++..+....
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~------- 96 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF------- 96 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS-------
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-------
Confidence 4556778899999999999999999999999999999999999999999999999999999999998765321
Q ss_pred CcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcC-CcEEEecHHHHHHHHHhccccccc
Q 007368 216 ARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERG-VDILVATPGRLVDLLERARVSLQM 294 (606)
Q Consensus 216 ~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~Ilv~Tp~~L~~~l~~~~~~l~~ 294 (606)
..+++||++||++|+.|++++++++....++.+..++++.....+...+..+ ++|+|+||++|.+++.+..+.+..
T Consensus 97 ---~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 ---KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp ---CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred ---CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 2345999999999999999999999887788899999998877777777665 899999999999999888778899
Q ss_pred eeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEec
Q 007368 295 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVG 360 (606)
Q Consensus 295 ~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~ 360 (606)
+++||+||||++++++|...+..++..+ +...|+++||||++.++..+++.++.+++.+.+.
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKL----NTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999988 5678999999999999999999999999887653
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.5e-35 Score=289.17 Aligned_cols=212 Identities=31% Similarity=0.545 Sum_probs=182.6
Q ss_pred CCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccC
Q 007368 133 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 212 (606)
Q Consensus 133 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~ 212 (606)
++...|.+..+|+++++++.+.+.+...+|.+|+++|+++++.+++++++++++|||+|||++|++|++..+....
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---- 90 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---- 90 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----
Confidence 3455667778899999999999999999999999999999999999999999999999999999999998775432
Q ss_pred CCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcC-CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcccc
Q 007368 213 PRGARTVYPLALILAPTRELSSQIHDEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 291 (606)
Q Consensus 213 ~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~ 291 (606)
.++++||++||++|+.|++++++++.... ++++.+++|+.....+...+ .+++|+|+||++|.+++....+.
T Consensus 91 ------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~ 163 (230)
T 2oxc_A 91 ------LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLN 163 (230)
T ss_dssp ------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSC
T ss_pred ------CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcc
Confidence 23469999999999999999999997554 78899999998877665554 46899999999999999888788
Q ss_pred ccceeEEEEecccccccCC-CHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEe
Q 007368 292 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~g-f~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~ 359 (606)
+.++++||+||||++++++ |...+..++..+ +..+|+++||||++.++..++..++.+++++.+
T Consensus 164 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 164 PGSIRLFILDEADKLLEEGSFQEQINWIYSSL----PASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp GGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred cccCCEEEeCCchHhhcCcchHHHHHHHHHhC----CCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 8999999999999999997 999999999988 567899999999999999999999999887654
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.6e-35 Score=319.97 Aligned_cols=310 Identities=15% Similarity=0.205 Sum_probs=215.0
Q ss_pred CCCHHHHhHHHHH----hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007368 164 KPTPVQRHAIPIS----VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai~~i----~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
+|+|||.++++++ ..++++|++++||+|||++++.. +..+..... ...+|||||+ .|+.||.++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~-i~~~~~~~~----------~~~~LIv~P~-~l~~qw~~e 104 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV-FSDAKKENE----------LTPSLVICPL-SVLKNWEEE 104 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHH-HHHHHHTTC----------CSSEEEEECS-TTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHH-HHHHHhcCC----------CCCEEEEccH-HHHHHHHHH
Confidence 6999999999876 35689999999999999986544 444433221 1239999995 699999999
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHH
Q 007368 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~ 319 (606)
+++|.. .+++.+++++... .....++|+|+||++|..... +....+++||+||||++.+.. ....+.+
T Consensus 105 ~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l 172 (500)
T 1z63_A 105 LSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAV 172 (500)
T ss_dssp HHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHH
T ss_pred HHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHH
Confidence 999864 4566665555421 112347999999999976543 334578999999999998754 3344555
Q ss_pred HhcCCCCCCCceEEEEeccChH----HHHHHH---------------------------------HHhhcCcEEEEeccc
Q 007368 320 QQMDMPPPGVRQTMLFSATFPK----EIQKLA---------------------------------SDFLANYVFLAVGRV 362 (606)
Q Consensus 320 ~~l~~~~~~~~q~ll~SAT~~~----~i~~l~---------------------------------~~~l~~~~~~~~~~~ 362 (606)
..+ ...+.+++|||+.. ++..++ ..++...+ +.....
T Consensus 173 ~~l-----~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~-lrr~k~ 246 (500)
T 1z63_A 173 KEL-----KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFI-LRRTKY 246 (500)
T ss_dssp HTS-----CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTE-ECCCTT
T ss_pred Hhh-----ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHe-eeeccc
Confidence 555 23578999999722 221111 11222222 111110
Q ss_pred c----CccCceeEEEEEec---------------------------------------------------------cchh
Q 007368 363 G----SSTDLIVQRVEYVH---------------------------------------------------------ESDK 381 (606)
Q Consensus 363 ~----~~~~~i~~~~~~~~---------------------------------------------------------~~~k 381 (606)
. ...+........+. ...|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 0 01111111122221 1234
Q ss_pred hhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-CCCcEEeeCccCHHHHHHHHHhccCC-CCc-EEEEc
Q 007368 382 RSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQERELALRSFKSG-KTP-ILVAT 458 (606)
Q Consensus 382 ~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~-iLVaT 458 (606)
...+.+++..... ...++||||+++..++.+++.|... ++.+..+||++++.+|++++++|+++ ..+ +||+|
T Consensus 327 ~~~l~~~l~~~~~-----~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st 401 (500)
T 1z63_A 327 MIRTMEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 401 (500)
T ss_dssp HHHHHHHHHHHHT-----TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC
T ss_pred HHHHHHHHHHHHc-----cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec
Confidence 4444555554432 3678999999999999999999885 99999999999999999999999988 555 89999
Q ss_pred cccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceE--EEEeccC
Q 007368 459 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA--TAFFNEN 508 (606)
Q Consensus 459 ~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~--~~~~~~~ 508 (606)
+++++|||+|.+++||+||+|+|+..|+||+||++|.|++..+ +.|+...
T Consensus 402 ~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 402 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred ccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999999999999999997765 4455543
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-34 Score=279.48 Aligned_cols=202 Identities=32% Similarity=0.598 Sum_probs=183.8
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCc
Q 007368 142 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP 221 (606)
Q Consensus 142 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p 221 (606)
.+|+++++++.+.+.+..++|.+|+|+|+++++.+++++++++++|||+|||++|++|++..+.... ..+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----------~~~ 72 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK----------DNI 72 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS----------CSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC----------CCe
Confidence 4699999999999999999999999999999999999999999999999999999999998764321 235
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcC-CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
++||++||++|+.|+++.++++.... ++++..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||+
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 69999999999999999999997665 78899999999888887777888999999999999999988778899999999
Q ss_pred ecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEE
Q 007368 301 DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFL 357 (606)
Q Consensus 301 DEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~ 357 (606)
||||++.+.+|...+..++..+ +...|+++||||+|.++..+++.++.+++.+
T Consensus 153 DEah~~~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 153 DEADKLLSQDFVQIMEDIILTL----PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHS----CTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EChHHhHhhCcHHHHHHHHHhC----CccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999988 5678999999999999999999999988754
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.3e-35 Score=326.61 Aligned_cols=282 Identities=16% Similarity=0.163 Sum_probs=207.0
Q ss_pred HHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcC
Q 007368 168 VQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQT 247 (606)
Q Consensus 168 ~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~ 247 (606)
.|.+.....+++++++++||||||||+. ++..+.... ..||++|||+||.|+++.++++
T Consensus 144 ~~~~p~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~~-------------~gl~l~PtR~LA~Qi~~~l~~~---- 202 (677)
T 3rc3_A 144 PNWYPDARAMQRKIIFHSGPTNSGKTYH----AIQKYFSAK-------------SGVYCGPLKLLAHEIFEKSNAA---- 202 (677)
T ss_dssp GGGCHHHHTSCCEEEEEECCTTSSHHHH----HHHHHHHSS-------------SEEEEESSHHHHHHHHHHHHHT----
T ss_pred hhhCHHHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhcC-------------CeEEEeCHHHHHHHHHHHHHhc----
Confidence 3444444567889999999999999983 333443321 2699999999999999999885
Q ss_pred CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCC
Q 007368 248 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 327 (606)
Q Consensus 248 ~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~ 327 (606)
++++..++|+...-. ....+..+++++|++.+. ....+++|||||||++++.+|...+..++..+. .
T Consensus 203 g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~---~ 269 (677)
T 3rc3_A 203 GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC---A 269 (677)
T ss_dssp TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC---E
T ss_pred CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccC---c
Confidence 678888888765300 000112567788764432 256789999999999999999999999998883 2
Q ss_pred CCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEE
Q 007368 328 GVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVF 407 (606)
Q Consensus 328 ~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF 407 (606)
...+++++|||. +.+..++...-....+....+. . .. .... .... .+. . .....|||
T Consensus 270 ~~i~il~~SAT~-~~i~~l~~~~~~~~~v~~~~r~---~-~l----~~~~--~~l~----~l~----~----~~~g~iIf 326 (677)
T 3rc3_A 270 EEVHLCGEPAAI-DLVMELMYTTGEEVEVRDYKRL---T-PI----SVLD--HALE----SLD----N----LRPGDCIV 326 (677)
T ss_dssp EEEEEEECGGGH-HHHHHHHHHHTCCEEEEECCCS---S-CE----EECS--SCCC----SGG----G----CCTTEEEE
T ss_pred cceEEEeccchH-HHHHHHHHhcCCceEEEEeeec---c-hH----HHHH--HHHH----HHH----h----cCCCCEEE
Confidence 678999999994 3355555443222222111100 0 00 0000 0000 000 0 02235899
Q ss_pred EcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccC--CCCcEEEEccccccCCCCCCccEEEEecC-------
Q 007368 408 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS--GKTPILVATDVAARGLDIPHVAHVVNFDL------- 478 (606)
Q Consensus 408 ~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVaT~v~~~GlDip~v~~VI~~d~------- 478 (606)
|++++.++.+++.|...++.+..+||+|++.+|+++++.|++ |+++|||||+++++|||| +|++||++++
T Consensus 327 ~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~ 405 (677)
T 3rc3_A 327 CFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINE 405 (677)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----
T ss_pred EcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccccccc
Confidence 999999999999999999999999999999999999999999 899999999999999999 8999999999
Q ss_pred -------CCCHhHHHHHhhccccCCCc---ceEEEEecc
Q 007368 479 -------PNDIDDYVHRIGRTGRAGKS---GLATAFFNE 507 (606)
Q Consensus 479 -------p~s~~~y~QRiGR~gR~g~~---G~~~~~~~~ 507 (606)
|.+..+|+||+|||||.|+. |.|+.++..
T Consensus 406 ~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 406 KGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp ------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred CCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 78999999999999999964 666665433
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.3e-35 Score=287.24 Aligned_cols=206 Identities=32% Similarity=0.509 Sum_probs=183.7
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccC
Q 007368 141 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVY 220 (606)
Q Consensus 141 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 220 (606)
..+|+++++++.+.+.++.++|.+|+++|+++++.+++++++++++|||||||++|++|++..+.... ..
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----------~~ 72 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER----------AE 72 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS----------CS
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc----------CC
Confidence 45799999999999999999999999999999999999999999999999999999999998775431 23
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcC----CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcccccccee
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQT----GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
+++||++||++|+.|++++++++.... ++++..++|+.....+...+..+++|+|+||++|.+++.+..+.+.+++
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 152 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAH 152 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcce
Confidence 469999999999999999999987655 6888888998876665555556789999999999999988877889999
Q ss_pred EEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEec
Q 007368 297 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVG 360 (606)
Q Consensus 297 ~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~ 360 (606)
+||+||||++++++|...+..++..+ +...|+++||||+|.++..+++.++.++..+.+.
T Consensus 153 ~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 153 ILVVDEADLMLDMGFITDVDQIAARM----PKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTS----CTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEEEcCchHHhhhChHHHHHHHHHhC----CcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999988 5678999999999999999999999999877654
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=284.75 Aligned_cols=211 Identities=32% Similarity=0.535 Sum_probs=185.3
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcc
Q 007368 139 PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGART 218 (606)
Q Consensus 139 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 218 (606)
.+..+|+++++++.+.+.+...+|..|+++|+++++.++.++++++++|||||||++|++|++..+...... ..
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~------~~ 95 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT------ST 95 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC------GG
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc------cc
Confidence 346679999999999999999999999999999999999999999999999999999999999988754211 12
Q ss_pred cCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhc-cccccceeE
Q 007368 219 VYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRY 297 (606)
Q Consensus 219 ~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~-~~~l~~~~~ 297 (606)
.++++||++||++|+.|++++++++....++++.+++|+.....+...+ .+++|+|+||++|.+++... .+.+.++++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 3456999999999999999999999887788999999998877666555 47899999999999988765 457889999
Q ss_pred EEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEec
Q 007368 298 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVG 360 (606)
Q Consensus 298 lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~ 360 (606)
||+||||++++++|...+..++..+ +..+|+++||||++..+..+++.++.++.++.+.
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENL----PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTS----CTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhC----CCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999988 6678999999999999999999999999887664
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.2e-34 Score=283.01 Aligned_cols=211 Identities=34% Similarity=0.546 Sum_probs=180.3
Q ss_pred CCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCC
Q 007368 136 NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 215 (606)
Q Consensus 136 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~ 215 (606)
..++++.+|+++++++.+.+.+..++|..|+|+|+++++.+++++++++++|||+|||++|++|++..+....
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~------- 80 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------- 80 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-------
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-------
Confidence 3456677899999999999999999999999999999999999999999999999999999999998775431
Q ss_pred CcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccce
Q 007368 216 ARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI 295 (606)
Q Consensus 216 ~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~ 295 (606)
..+++||++||++|+.|++++++++....++++..++|+.....+...+.. ++|+|+||++|.+++.+....+.++
T Consensus 81 ---~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 81 ---KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp ---CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ---CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhC
Confidence 234699999999999999999999988888999999998876666555544 8999999999999999888888999
Q ss_pred eEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEecc
Q 007368 296 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVGR 361 (606)
Q Consensus 296 ~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~ 361 (606)
++||+||||++.+++|...+..++..+ +...|+++||||++.++..+++.++.+++.+.+..
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhC----CccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999988 56789999999999999999999999998876643
No 65
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=289.45 Aligned_cols=203 Identities=35% Similarity=0.538 Sum_probs=179.7
Q ss_pred CccccCC--CCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCccc
Q 007368 142 NTFAEID--LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTV 219 (606)
Q Consensus 142 ~~f~~~~--l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 219 (606)
.+|+++. +++.+++.+..++|.+|+++|.++++.++.+++++++||||||||++|++|++..+.+.... ...
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~------~~~ 125 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM------PRN 125 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC------GGG
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc------ccC
Confidence 3566666 99999999999999999999999999999999999999999999999999999988764321 123
Q ss_pred CcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcc-ccccceeEE
Q 007368 220 YPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYL 298 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~-~~l~~~~~l 298 (606)
++++|||+||++||.|+++.++++....++.+..++|+.....+...+..+++|+|+||++|.+++.... +.+.++++|
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 4569999999999999999999998888899999999999888888888889999999999999887754 578999999
Q ss_pred EEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCc
Q 007368 299 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANY 354 (606)
Q Consensus 299 VlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~ 354 (606)
|+||||+|++++|...+..|+..+ +..+|+++||||++.+++.+++.++.++
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~----~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLL----PTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHS----CSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhC----CCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999999998 6778999999999999999999988743
No 66
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.2e-35 Score=344.40 Aligned_cols=319 Identities=18% Similarity=0.195 Sum_probs=217.8
Q ss_pred CCCCHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHH
Q 007368 163 VKPTPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 240 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~ 240 (606)
.+|+|||.+++..++.. .++|++++||+|||++++..+...+.... . .++|||||+ .|+.||.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~----------~rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-A----------ERVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-C----------CCEEEECCT-TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-C----------CeEEEEeCH-HHHHHHHHHH
Confidence 46999999999988774 58899999999999998776655443221 1 139999999 9999999999
Q ss_pred HHhhhcCCcEEEEEECCCChHHHHHH---HhcCCcEEEecHHHHHHHHHh-ccccccceeEEEEecccccccCCCHH-HH
Q 007368 241 KKFSYQTGVKVVVAYGGAPINQQLRE---LERGVDILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEP-QI 315 (606)
Q Consensus 241 ~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~~~Ilv~Tp~~L~~~l~~-~~~~l~~~~~lVlDEah~~~~~gf~~-~i 315 (606)
.+.. ++++.++.+... ...... .....+|+|+|++.|...... ..+...++++||+||||++....... ..
T Consensus 220 ~~~f---~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 220 LRRF---NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHHS---CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHHh---CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 6653 555555433221 111111 112468999999988643221 22345678999999999997654221 11
Q ss_pred HHHHHhcCCCCCCCceEEEEeccChH----HHHHHH----------------------------HHhhcC----------
Q 007368 316 RKIVQQMDMPPPGVRQTMLFSATFPK----EIQKLA----------------------------SDFLAN---------- 353 (606)
Q Consensus 316 ~~i~~~l~~~~~~~~q~ll~SAT~~~----~i~~l~----------------------------~~~l~~---------- 353 (606)
..++..+. ....++++||||+.. ++..++ ..++..
T Consensus 296 ~~~l~~L~---~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 372 (968)
T 3dmq_A 296 YQAIEQLA---EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNM 372 (968)
T ss_dssp HHHHHHHH---TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTS
T ss_pred HHHHHHHh---hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 22233331 233468999999732 111111 000000
Q ss_pred ------------------------------------------cEEEEeccccC--ccCceeEEE----------------
Q 007368 354 ------------------------------------------YVFLAVGRVGS--STDLIVQRV---------------- 373 (606)
Q Consensus 354 ------------------------------------------~~~~~~~~~~~--~~~~i~~~~---------------- 373 (606)
.+.+...+... ........+
T Consensus 373 L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~ 452 (968)
T 3dmq_A 373 LGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSG 452 (968)
T ss_dssp STTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_pred HHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHh
Confidence 00000000000 000000000
Q ss_pred ------------------------------EEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHh
Q 007368 374 ------------------------------EYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYM 423 (606)
Q Consensus 374 ------------------------------~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~ 423 (606)
..+....|...+.+++.. ....++||||+++..++.+++.|..
T Consensus 453 ~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-------~~~~k~iVF~~~~~~~~~l~~~L~~ 525 (968)
T 3dmq_A 453 IMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-------HRSQKVLVICAKAATALQLEQVLRE 525 (968)
T ss_dssp HTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-------TSSSCCCEECSSTHHHHHHHHHHHT
T ss_pred hhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-------CCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 112233456666666654 2367899999999999999999994
Q ss_pred -CCCCcEEeeCccCHHHHHHHHHhccCCC--CcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcce
Q 007368 424 -NGFPATTIHGDRTQQERELALRSFKSGK--TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 500 (606)
Q Consensus 424 -~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~ 500 (606)
.++++..+||+|++.+|+.+++.|++|+ ++|||||+++++|||+|++++||+||+|+++..|+||+||++|.|+.+.
T Consensus 526 ~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~ 605 (968)
T 3dmq_A 526 REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHD 605 (968)
T ss_dssp TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSC
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCce
Confidence 5999999999999999999999999998 9999999999999999999999999999999999999999999999997
Q ss_pred EEEEecc
Q 007368 501 ATAFFNE 507 (606)
Q Consensus 501 ~~~~~~~ 507 (606)
|++++..
T Consensus 606 v~v~~~~ 612 (968)
T 3dmq_A 606 IQIHVPY 612 (968)
T ss_dssp CEEEEEE
T ss_pred EEEEEec
Confidence 6666543
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.3e-34 Score=277.23 Aligned_cols=204 Identities=40% Similarity=0.639 Sum_probs=183.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcE
Q 007368 143 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL 222 (606)
Q Consensus 143 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~ 222 (606)
+|+++++++.+.+.++..+|.+|+|+|+++++.+++++++++++|||+|||++|++|++..+..... ...+++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-------~~~~~~ 74 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-------RGRKPR 74 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------TTCCCS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------cCCCCc
Confidence 5899999999999999999999999999999999999999999999999999999999987754211 123467
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEec
Q 007368 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 302 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDE 302 (606)
+||++||++|+.|++++++++... +++..++++.....+...+..+++|+|+||++|.+++.+..+.+.++++||+||
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 999999999999999999998654 678888999888888778888899999999999999998888899999999999
Q ss_pred ccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEEe
Q 007368 303 ADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAV 359 (606)
Q Consensus 303 ah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~ 359 (606)
||++++++|...+..++..+ +...|+++||||++.+++.+++.++.++..+.+
T Consensus 153 ah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSAT----PPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----CTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhHhhccchHHHHHHHHHhC----CccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999887 567899999999999999999999999987754
No 68
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=290.48 Aligned_cols=222 Identities=34% Similarity=0.560 Sum_probs=187.3
Q ss_pred ccccCCCCCCCCCCccccC----CCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 129 PVETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 129 ~v~~~~~~~p~~~~~f~~~----~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
.+++.+...|.|+.+|+++ ++++.+.+.+..++|.+|+|+|+++|+.++++++++++||||||||++|++|++..+
T Consensus 12 ~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 12 KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 4455677889999999987 899999999999999999999999999999999999999999999999999999887
Q ss_pred HhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHH-HHHhcCCcEEEecHHHHHH
Q 007368 205 MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQL-RELERGVDILVATPGRLVD 283 (606)
Q Consensus 205 ~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~Ilv~Tp~~L~~ 283 (606)
.... ..++++||++||++|+.|++++++++....++++..++++....... .....+++|+|+||++|.+
T Consensus 92 ~~~~---------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 162 (245)
T 3dkp_A 92 KQPA---------NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY 162 (245)
T ss_dssp CSCC---------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHH
T ss_pred hhcc---------cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHH
Confidence 5321 22456999999999999999999999888888887776654322221 1223468999999999999
Q ss_pred HHHhc--cccccceeEEEEeccccccc---CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEE
Q 007368 284 LLERA--RVSLQMIRYLALDEADRMLD---MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLA 358 (606)
Q Consensus 284 ~l~~~--~~~l~~~~~lVlDEah~~~~---~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~ 358 (606)
++... .+.+.++++||+||||++++ .+|...+..++..+. +...|+++||||+|.+++.+++.++.+++.+.
T Consensus 163 ~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 163 LLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT---SHKVRRAMFSATFAYDVEQWCKLNLDNVISVS 239 (245)
T ss_dssp HHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC---CTTCEEEEEESSCCHHHHHHHHHHSSSCEEEE
T ss_pred HHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC---CCCcEEEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence 99876 46788999999999999998 578899999887763 35689999999999999999999999999988
Q ss_pred eccc
Q 007368 359 VGRV 362 (606)
Q Consensus 359 ~~~~ 362 (606)
++..
T Consensus 240 ~~~~ 243 (245)
T 3dkp_A 240 IGAR 243 (245)
T ss_dssp ECC-
T ss_pred eCCC
Confidence 7653
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=8.3e-33 Score=299.82 Aligned_cols=323 Identities=17% Similarity=0.174 Sum_probs=240.2
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+++|.-..-.+++|+ |+.+.||+|||+++.+|++-..+..+ .+.||+||+.||.|-++++..+
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~-------------~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK-------------GVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS-------------CEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC-------------ceEEEeccHHHHHhHHHHHHHH
Confidence 68999998888888776 99999999999999999986655432 3999999999999999999999
Q ss_pred hhcCCcEEEEEECCC------------------------------------------------ChHHHHHHHhcCCcEEE
Q 007368 244 SYQTGVKVVVAYGGA------------------------------------------------PINQQLRELERGVDILV 275 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~------------------------------------------------~~~~~~~~l~~~~~Ilv 275 (606)
...+++++.+++... ......+.-...|||++
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItY 219 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTY 219 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEE
Confidence 999999999988721 00001122223489999
Q ss_pred ecHHHH-HHHHHhcc------ccccceeEEEEecccccc-cCC---------------CHHHHHHHHHhcC---------
Q 007368 276 ATPGRL-VDLLERAR------VSLQMIRYLALDEADRML-DMG---------------FEPQIRKIVQQMD--------- 323 (606)
Q Consensus 276 ~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~~~-~~g---------------f~~~i~~i~~~l~--------- 323 (606)
+|..-| .+.|.... .....+.+.|+||+|.+| |.. ....+..++..+.
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vde 299 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDE 299 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECC
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEc
Confidence 999887 45554321 124567899999999754 210 0001111111110
Q ss_pred -----------------------------------------------CC-------------------------------
Q 007368 324 -----------------------------------------------MP------------------------------- 325 (606)
Q Consensus 324 -----------------------------------------------~~------------------------------- 325 (606)
..
T Consensus 300 k~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLH 379 (822)
T 3jux_A 300 KARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLH 379 (822)
T ss_dssp SSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHH
T ss_pred ccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHH
Confidence 00
Q ss_pred ----------CCC----------------CceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeE-EEEEecc
Q 007368 326 ----------PPG----------------VRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQ-RVEYVHE 378 (606)
Q Consensus 326 ----------~~~----------------~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 378 (606)
... -.++.+||+|...+...+.+.|-.+ ++.+.. ......+.+ ...+...
T Consensus 380 QaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nkp~~R~d~~d~vy~t~ 456 (822)
T 3jux_A 380 QAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPT-HKPMIRKDHDDLVFRTQ 456 (822)
T ss_dssp HHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCC-SSCCCCEECCCEEESSH
T ss_pred HHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECC-CCCcceeecCcEEEecH
Confidence 000 0257899999988877777766433 333322 222222222 3566777
Q ss_pred chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc
Q 007368 379 SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT 458 (606)
Q Consensus 379 ~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 458 (606)
..|...+.+.+...... ..++||||+|++.++.|++.|...++++..||+++.+.++..+...|+.| .|+|||
T Consensus 457 ~eK~~al~~~I~~~~~~-----gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVAT 529 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKK-----GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIAT 529 (822)
T ss_dssp HHHHHHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEE
T ss_pred HHHHHHHHHHHHHHhhC-----CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEc
Confidence 88999999888876433 67899999999999999999999999999999997777777677777766 599999
Q ss_pred cccccCCCCC--------CccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChh
Q 007368 459 DVAARGLDIP--------HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLS 511 (606)
Q Consensus 459 ~v~~~GlDip--------~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~ 511 (606)
++|+||+||+ +..|||++++|.+.+.|+||+|||||+|.+|.+++|++.+|..
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 9999999998 5669999999999999999999999999999999999988743
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.3e-34 Score=277.67 Aligned_cols=206 Identities=32% Similarity=0.511 Sum_probs=180.6
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcc
Q 007368 139 PPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGART 218 (606)
Q Consensus 139 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 218 (606)
....+|+++++++.+.+.+...+|.+|+|+|+++++.+++++++++++|||+|||++|++|++..+....
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~---------- 80 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---------- 80 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT----------
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC----------
Confidence 3445799999999999999999999999999999999999999999999999999999999998764321
Q ss_pred cCcEEEEEccchHHHHHHHHHHHHhhhcC-CcEEEEEECCCChHHHHHHHhc-CCcEEEecHHHHHHHHHhcccccccee
Q 007368 219 VYPLALILAPTRELSSQIHDEAKKFSYQT-GVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 219 ~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
..+++||++||++|+.|++++++++.... ++++.+++|+.....+...+.. .++|+|+||++|.+++.+..+.+.+++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 160 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 160 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCC
Confidence 12459999999999999999999997655 7899999999888777777665 469999999999999998888899999
Q ss_pred EEEEeccccccc-CCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCcEEEE
Q 007368 297 YLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLA 358 (606)
Q Consensus 297 ~lVlDEah~~~~-~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~ 358 (606)
+||+||||++++ .+|...+..++..+ +...|+++||||++.+++.+++.++.+++.+.
T Consensus 161 ~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 161 HFILDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EEEEESHHHHHSSHHHHHHHHHHHHTS----CSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEEEcCHHHHhcccCcHHHHHHHHHhC----CCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999999987 57888888888876 56789999999999999999999999987764
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-32 Score=311.13 Aligned_cols=319 Identities=18% Similarity=0.242 Sum_probs=224.2
Q ss_pred CCCCHHHHhHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007368 163 VKPTPVQRHAIPISV----AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~----~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
.+|+|||.+++.+++ .++++|++.+||+|||++++..+...+...... ..+||||| ..|+.||.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~----------~~~LIV~P-~sll~qW~~ 303 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN----------GPHIIVVP-LSTMPAWLD 303 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCC----------SCEEEECC-TTTHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCC----------CCEEEEEC-chHHHHHHH
Confidence 369999999998765 679999999999999998766554443332211 12899999 678999999
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHHHh------------cCCcEEEecHHHHHHHHHhccccccceeEEEEeccccc
Q 007368 239 EAKKFSYQTGVKVVVAYGGAPINQQLRELE------------RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 306 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------------~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~ 306 (606)
++.+++. .+++.+++|.......++... ..++|+|+|++.|...... +....+++|||||||++
T Consensus 304 E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 304 TFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 9999863 567777666655444444322 2478999999999764332 22346889999999999
Q ss_pred ccCCCHHHHHHHHHhcCCCCCCCceEEEEeccC----hHHHHHHHHHh------------------------------hc
Q 007368 307 LDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF----PKEIQKLASDF------------------------------LA 352 (606)
Q Consensus 307 ~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~----~~~i~~l~~~~------------------------------l~ 352 (606)
.+.. ..+...+..+ .....+++|||+ ..++..++..+ +.
T Consensus 380 kn~~--s~~~~~l~~l-----~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 452 (800)
T 3mwy_W 380 KNAE--SSLYESLNSF-----KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQ 452 (800)
T ss_dssp CCSS--SHHHHHHTTS-----EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTG
T ss_pred cCch--hHHHHHHHHh-----hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHh
Confidence 7643 3445555554 344679999997 22333222211 11
Q ss_pred CcEEEEeccc-cCccCceeEEEEEec------------------------------------------------------
Q 007368 353 NYVFLAVGRV-GSSTDLIVQRVEYVH------------------------------------------------------ 377 (606)
Q Consensus 353 ~~~~~~~~~~-~~~~~~i~~~~~~~~------------------------------------------------------ 377 (606)
..+....... ....+........+.
T Consensus 453 p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~ 532 (800)
T 3mwy_W 453 PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEER 532 (800)
T ss_dssp GGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHH
T ss_pred HHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHH
Confidence 1111111000 000111111111111
Q ss_pred ---------------------cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccC
Q 007368 378 ---------------------ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 436 (606)
Q Consensus 378 ---------------------~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 436 (606)
...|...|.++|..... ...++||||+....++.|.++|...++.+..|||.++
T Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~-----~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 607 (800)
T 3mwy_W 533 VLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK-----DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP 607 (800)
T ss_dssp HCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT-----TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC
T ss_pred HHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhh-----CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 12344445555544432 3678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCC---cEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceE--EEEeccC
Q 007368 437 QQERELALRSFKSGKT---PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA--TAFFNEN 508 (606)
Q Consensus 437 ~~~R~~~l~~F~~g~~---~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~--~~~~~~~ 508 (606)
+.+|..+++.|+.+.. .+||+|+++++|||++.+++||+||+|+|+..++||+||+.|.|++..+ +.|++..
T Consensus 608 ~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 608 SAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred HHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 9999999999998654 4999999999999999999999999999999999999999999987554 4455554
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-31 Score=298.01 Aligned_cols=323 Identities=15% Similarity=0.161 Sum_probs=218.3
Q ss_pred CCCHHHHhHHHHHh---------cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHH
Q 007368 164 KPTPVQRHAIPISV---------AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSS 234 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~---------~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~ 234 (606)
.|+|||.+++.++. .+..+|+..+||+|||++++..+...+ ....... .....+|||||+ .|+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~-~~~~~~~-----p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLL-KQSPDCK-----PEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHH-HCCTTSS-----CSCSCEEEEECH-HHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHH-HhCcccc-----CCCCcEEEEecH-HHHH
Confidence 69999999999874 346789999999999998766665443 3221111 111248999997 8999
Q ss_pred HHHHHHHHhhhcCCcEEEEEECCCChHH--HHHHHhc------CCcEEEecHHHHHHHHHhccccccceeEEEEeccccc
Q 007368 235 QIHDEAKKFSYQTGVKVVVAYGGAPINQ--QLRELER------GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 306 (606)
Q Consensus 235 Qi~~~~~~~~~~~~~~~~~~~gg~~~~~--~~~~l~~------~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~ 306 (606)
||.+++.+|... .+.++.++++..... ....... ..+|+|+|++.|..... .+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceec
Confidence 999999999755 466666666653221 2222211 37899999999976432 233457889999999999
Q ss_pred ccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHH----HHHH---------------HH-------------------
Q 007368 307 LDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKE----IQKL---------------AS------------------- 348 (606)
Q Consensus 307 ~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~----i~~l---------------~~------------------- 348 (606)
.+.. ......+..+. ....+++|||+-.+ +..+ .+
T Consensus 205 kn~~--~~~~~al~~l~-----~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 277 (644)
T 1z3i_X 205 KNSD--NQTYLALNSMN-----AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDR 277 (644)
T ss_dssp CTTC--HHHHHHHHHHC-----CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHH
T ss_pred CChh--hHHHHHHHhcc-----cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHH
Confidence 7654 34445555552 34689999996211 0000 00
Q ss_pred -----------HhhcCcEEEEecccc--CccCceeEEEEEecc-------------------------------------
Q 007368 349 -----------DFLANYVFLAVGRVG--SSTDLIVQRVEYVHE------------------------------------- 378 (606)
Q Consensus 349 -----------~~l~~~~~~~~~~~~--~~~~~i~~~~~~~~~------------------------------------- 378 (606)
..+... .+.-.... ...+.....+..+.-
T Consensus 278 ~~~~~~~~~L~~~l~~~-~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~L 356 (644)
T 1z3i_X 278 AAGEQKLQELISIVNRC-LIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSL 356 (644)
T ss_dssp HHHHHHHHHHHHHHHHH-EECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHH
Confidence 001101 11100000 001111111111111
Q ss_pred -----------------------------------------chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHH
Q 007368 379 -----------------------------------------SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADAL 417 (606)
Q Consensus 379 -----------------------------------------~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l 417 (606)
+.|...+..++..... ....++||||+....++.|
T Consensus 357 rk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~----~~~~k~lIFs~~~~~~~~l 432 (644)
T 1z3i_X 357 KKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRT----TTSDKVVLVSNYTQTLDLF 432 (644)
T ss_dssp HHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHH----HCCCEEEEEESCHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhh----cCCCEEEEEEccHHHHHHH
Confidence 1122222222222211 1257899999999999999
Q ss_pred HHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCc---EEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhcccc
Q 007368 418 EHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP---ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR 494 (606)
Q Consensus 418 ~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~---iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR 494 (606)
.++|...++.+..+||++++.+|++++++|+++... +||+|+++++|||++.+++||+||+|+|+..|.|++||++|
T Consensus 433 ~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R 512 (644)
T 1z3i_X 433 EKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWR 512 (644)
T ss_dssp HHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSS
T ss_pred HHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhh
Confidence 999999999999999999999999999999998764 89999999999999999999999999999999999999999
Q ss_pred CCCcce--EEEEeccC
Q 007368 495 AGKSGL--ATAFFNEN 508 (606)
Q Consensus 495 ~g~~G~--~~~~~~~~ 508 (606)
.|++.. ++.|++..
T Consensus 513 ~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 513 DGQKKTCYIYRLLSTG 528 (644)
T ss_dssp TTCCSCEEEEEEEETT
T ss_pred cCCCCceEEEEEEECC
Confidence 998764 44455554
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=4.1e-32 Score=314.64 Aligned_cols=329 Identities=14% Similarity=0.086 Sum_probs=218.9
Q ss_pred HHHHHHHHhCC-------CCCCCHHHHhHHHHHhc--------------CCCEEEEccCCCchhHHhHHHHHHHHHhhhc
Q 007368 151 EELNLNIRRCK-------YVKPTPVQRHAIPISVA--------------GRDLMACAQTGSGKTAAFCFPIISGIMREQY 209 (606)
Q Consensus 151 ~~l~~~l~~~~-------~~~p~~~Q~~ai~~i~~--------------~~d~li~a~TGsGKT~a~llpil~~l~~~~~ 209 (606)
+.++..+...- ...|+|+|.+|++.++. +++++++++||||||+++ ++++..+ ...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll-~~~- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLA-TEL- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHH-TTC-
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHH-Hhc-
Confidence 44555555442 23599999999998765 368999999999999997 6666433 221
Q ss_pred ccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHh-cCCcEEEecHHHHHHHHHhc
Q 007368 210 VQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERA 288 (606)
Q Consensus 210 ~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~Tp~~L~~~l~~~ 288 (606)
...+++|||+||++|+.|+.+++++|... .+.++.+.......+. ..++|+|+||++|..++...
T Consensus 328 --------~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~ 393 (1038)
T 2w00_A 328 --------DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE 393 (1038)
T ss_dssp --------TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHC
T ss_pred --------CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcc
Confidence 11246999999999999999999998643 1234555555555564 46899999999999988654
Q ss_pred c--ccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHH----HHHHHhhcCcEEEEec--
Q 007368 289 R--VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQ----KLASDFLANYVFLAVG-- 360 (606)
Q Consensus 289 ~--~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~----~l~~~~l~~~~~~~~~-- 360 (606)
. ..+..+.+||+||||++.. ...+..|...+ +..++++||||+..... .....++.++++....
T Consensus 394 ~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~-----p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~ 465 (1038)
T 2w00_A 394 SDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKF-----KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITD 465 (1038)
T ss_dssp CCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHC-----SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHH
T ss_pred cchhccccccEEEEEccchhcc---hHHHHHHHHhC-----CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHH
Confidence 2 2456789999999999764 23456666666 34789999999864221 1122222232221100
Q ss_pred --cccCccCceeEEEEE-------------------------eccchhhhHHHHHH-HHHHhccc----CCCCceEEEEE
Q 007368 361 --RVGSSTDLIVQRVEY-------------------------VHESDKRSHLMDLL-HAQVANGV----HGKQSLTLVFV 408 (606)
Q Consensus 361 --~~~~~~~~i~~~~~~-------------------------~~~~~k~~~l~~ll-~~~~~~~~----~~~~~~~LVF~ 408 (606)
..+...+ +...+.. +....+...+.+.+ ........ .....++||||
T Consensus 466 AI~dg~l~p-~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~ 544 (1038)
T 2w00_A 466 AIRDEKVLK-FKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAV 544 (1038)
T ss_dssp HHHHTSSCC-EEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEE
T ss_pred HHhCCCcCC-eEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEE
Confidence 0000000 0000000 00111222333322 22211110 01245799999
Q ss_pred cchhhHHHHHHHHHhCC------------CCcE-EeeCc----------c----------CH------------------
Q 007368 409 ETKKGADALEHWLYMNG------------FPAT-TIHGD----------R----------TQ------------------ 437 (606)
Q Consensus 409 ~s~~~~~~l~~~L~~~~------------~~~~-~lhg~----------~----------~~------------------ 437 (606)
++++.|..+++.|...+ +++. .+|++ + ++
T Consensus 545 ~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~ 624 (1038)
T 2w00_A 545 SSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFK 624 (1038)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhc
Confidence 99999999999997643 5554 55542 2 22
Q ss_pred -----------HHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCc----ceEE
Q 007368 438 -----------QERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS----GLAT 502 (606)
Q Consensus 438 -----------~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~----G~~~ 502 (606)
.+|..++++|++++++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++
T Consensus 625 ~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IV 703 (1038)
T 2w00_A 625 TNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIV 703 (1038)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEE
T ss_pred ccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEE
Confidence 248889999999999999999999999999999 788999999999999999999998754 6677
Q ss_pred EEec
Q 007368 503 AFFN 506 (606)
Q Consensus 503 ~~~~ 506 (606)
.|++
T Consensus 704 df~~ 707 (1038)
T 2w00_A 704 TFRD 707 (1038)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 6664
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=7.4e-31 Score=249.13 Aligned_cols=180 Identities=39% Similarity=0.664 Sum_probs=148.6
Q ss_pred HHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCC
Q 007368 348 SDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFP 427 (606)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~ 427 (606)
..+|.+|..+.+.........+.|.+..+....|...|.+++... ..++||||++++.++.+++.|...++.
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~g~~ 80 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--------PPPVLIFAEKKADVDAIHEYLLLKGVE 80 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS--------CSCEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--------CCCEEEEECCHHHHHHHHHHHHHcCCc
Confidence 356778888888877778889999999999999988888877531 457999999999999999999999999
Q ss_pred cEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEecc
Q 007368 428 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 428 ~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+||++|.|++|.|++|+++
T Consensus 81 ~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~ 160 (191)
T 2p6n_A 81 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINK 160 (191)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECT
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-ChhhHHHHHHHHHHhcCcccHHHHHHH
Q 007368 508 N-NLSLARPLAELMQESNQEVPAWLTRYA 535 (606)
Q Consensus 508 ~-~~~~~~~l~~~l~~~~q~vp~~L~~~~ 535 (606)
. +...++.|.++++...+++|++|.+++
T Consensus 161 ~~~~~~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 161 ACDESVLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp TSCHHHHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred chhHHHHHHHHHHHHHccCcCCHHHHhhc
Confidence 6 788899999999999999999998775
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=1.5e-28 Score=271.29 Aligned_cols=324 Identities=17% Similarity=0.179 Sum_probs=238.6
Q ss_pred hCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHH
Q 007368 159 RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 238 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~ 238 (606)
..++ +|+++|..++|.+++|+ |++++||+|||++|++|++...+.. ..++||+||++||.|+++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G-------------~qv~VvTPTreLA~Qdae 138 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG-------------KGVHVVTVNDYLARRDAE 138 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC-------------SCCEEEESSHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC-------------CCEEEEeCCHHHHHHHHH
Confidence 4578 99999999999999998 9999999999999999997555432 139999999999999999
Q ss_pred HHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHH-HHHHHhcc------cccc---ceeEEEEecccccc-
Q 007368 239 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQ---MIRYLALDEADRML- 307 (606)
Q Consensus 239 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L-~~~l~~~~------~~l~---~~~~lVlDEah~~~- 307 (606)
++..+...+++++.+++|+.+. +.+.+..+|+|+|+||++| +++|.... +.++ .+.++||||+|+|+
T Consensus 139 ~m~~l~~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 139 WMGPVYRGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp HHHHHHHTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred HHHHHHHhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 9999999999999999999874 3445556799999999999 88887653 4567 89999999999987
Q ss_pred cCCCH---------------HHHHHHHHhcCCCC----------------------------------------------
Q 007368 308 DMGFE---------------PQIRKIVQQMDMPP---------------------------------------------- 326 (606)
Q Consensus 308 ~~gf~---------------~~i~~i~~~l~~~~---------------------------------------------- 326 (606)
+.+.. ..+..++..+....
T Consensus 217 DeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~ 296 (997)
T 2ipc_A 217 DEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPE 296 (997)
T ss_dssp SSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTT
T ss_pred hCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCch
Confidence 33211 23444444442100
Q ss_pred ---------------------------------------------------------------CCC--------------
Q 007368 327 ---------------------------------------------------------------PGV-------------- 329 (606)
Q Consensus 327 ---------------------------------------------------------------~~~-------------- 329 (606)
...
T Consensus 297 n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr 376 (997)
T 2ipc_A 297 NMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFR 376 (997)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHH
Confidence 000
Q ss_pred --ceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEE
Q 007368 330 --RQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVF 407 (606)
Q Consensus 330 --~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF 407 (606)
..+.+||.|...+-..+.+.|--+. +.+.........-.....+.....|...+.+.+.+.... ..++||+
T Consensus 377 ~Y~kLsGMTGTA~tE~~Ef~~iY~l~V--v~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~-----GqPVLVg 449 (997)
T 2ipc_A 377 LYEKRAGMTGTAKTEEKEFQEIYGMDV--VVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYER-----GQPVLVG 449 (997)
T ss_dssp TSSEEEEEESSCGGGHHHHHHHHCCCE--EECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHH-----TCCEEEE
T ss_pred hChHheecCCCchHHHHHHHHHhCCCE--EEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHC-----CCCEEEE
Confidence 1345666776665555555443332 222221111112223345566778888888877766544 7889999
Q ss_pred EcchhhHHHHHHHHH-----------------------------------------------------------------
Q 007368 408 VETKKGADALEHWLY----------------------------------------------------------------- 422 (606)
Q Consensus 408 ~~s~~~~~~l~~~L~----------------------------------------------------------------- 422 (606)
|.|.+..+.|+++|+
T Consensus 450 T~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 529 (997)
T 2ipc_A 450 TISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEG 529 (997)
T ss_dssp CSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccc
Confidence 999999999999998
Q ss_pred -----------hCCCCcEEeeCccCHHHHHHHHHhccCCC-CcEEEEccccccCCCCCCc-------------------c
Q 007368 423 -----------MNGFPATTIHGDRTQQERELALRSFKSGK-TPILVATDVAARGLDIPHV-------------------A 471 (606)
Q Consensus 423 -----------~~~~~~~~lhg~~~~~~R~~~l~~F~~g~-~~iLVaT~v~~~GlDip~v-------------------~ 471 (606)
..+++..+|++..-..+- +++. ..|+ -.|-|||++|.||.||.-- .
T Consensus 530 ~~~~~~~~~~~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~ 606 (997)
T 2ipc_A 530 LKRAVHTLAVLRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYE 606 (997)
T ss_dssp HHHHHHHHHHHHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTH
T ss_pred cchhhhhhHHHHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccc
Confidence 567777778765433332 2222 2233 3499999999999999532 1
Q ss_pred -------------------------------------------------------EEEEecCCCCHhHHHHHhhccccCC
Q 007368 472 -------------------------------------------------------HVVNFDLPNDIDDYVHRIGRTGRAG 496 (606)
Q Consensus 472 -------------------------------------------------------~VI~~d~p~s~~~y~QRiGR~gR~g 496 (606)
|||--..+.|..--.|-.||+||.|
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQG 686 (997)
T 2ipc_A 607 WKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQG 686 (997)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSS
T ss_pred cccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCC
Confidence 8999999999999999999999999
Q ss_pred CcceEEEEeccCCh
Q 007368 497 KSGLATAFFNENNL 510 (606)
Q Consensus 497 ~~G~~~~~~~~~~~ 510 (606)
.+|.+..|++-+|.
T Consensus 687 DPGsSrF~LSLeDd 700 (997)
T 2ipc_A 687 DPGGSRFYVSFDDD 700 (997)
T ss_dssp CCCEEEEEEESSSH
T ss_pred CCCCeEEEEECChH
Confidence 99999999887653
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=1.1e-28 Score=276.88 Aligned_cols=177 Identities=24% Similarity=0.263 Sum_probs=136.9
Q ss_pred CceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEE
Q 007368 329 VRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFV 408 (606)
Q Consensus 329 ~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~ 408 (606)
..|+++||||++...... ....+...+...... ...+.......+...+++.+...... ..++||||
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~----~p~i~v~~~~~~~~~Ll~~l~~~~~~-----~~~vlVf~ 446 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLL----DPLVRVKPTENQILDLMEGIRERAAR-----GERTLVTV 446 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCC----CCEEEEECSTTHHHHHHHHHHHHHHT-----TCEEEEEC
T ss_pred cCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCC----CCeEEEecccchHHHHHHHHHHHHhc-----CCEEEEEE
Confidence 578999999987643211 111111111110111 11122334445566666666655433 56899999
Q ss_pred cchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecC-----CCCHh
Q 007368 409 ETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL-----PNDID 483 (606)
Q Consensus 409 ~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~-----p~s~~ 483 (606)
+++..++.|+++|...++++..+|+++++.+|.++++.|+.|+++|||||+++++|+|+|+|++||++|. |.+..
T Consensus 447 ~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~ 526 (664)
T 1c4o_A 447 LTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSER 526 (664)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHH
T ss_pred CCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHhhccccCCCcceEEEEeccCChhhHHHHHHH
Q 007368 484 DYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAEL 519 (606)
Q Consensus 484 ~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~ 519 (606)
+|+||+|||||. .+|.|++|++..+..+.+.+.+.
T Consensus 527 ~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~ 561 (664)
T 1c4o_A 527 SLIQTIGRAARN-ARGEVWLYADRVSEAMQRAIEET 561 (664)
T ss_dssp HHHHHHGGGTTS-TTCEEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHCccCcC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999 58999999998877665555443
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=238.52 Aligned_cols=169 Identities=63% Similarity=1.014 Sum_probs=143.7
Q ss_pred cCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHH
Q 007368 363 GSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 442 (606)
Q Consensus 363 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 442 (606)
....+.+.|.+..+....|...|.+++.... +..++||||++++.++.+++.|...++.+..+||+|++.+|+.
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~------~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 87 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHH
Confidence 3456789999999999999999999887632 3678999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHH
Q 007368 443 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQE 522 (606)
Q Consensus 443 ~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~ 522 (606)
+++.|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+||++|.|++|.|++|+++.+...++.+.+.+..
T Consensus 88 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 88 ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp HHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccHHHHHHHHh
Q 007368 523 SNQEVPAWLTRYASR 537 (606)
Q Consensus 523 ~~q~vp~~L~~~~~~ 537 (606)
..+++|.+|.+++..
T Consensus 168 ~~~~~~~~l~~~a~~ 182 (185)
T 2jgn_A 168 AKQEVPSWLENMAYE 182 (185)
T ss_dssp TTCCCCHHHHHHHC-
T ss_pred ccCCCCHHHHHHHHH
Confidence 999999999999864
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=5e-28 Score=271.36 Aligned_cols=178 Identities=21% Similarity=0.261 Sum_probs=138.1
Q ss_pred CCceEEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEE
Q 007368 328 GVRQTMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVF 407 (606)
Q Consensus 328 ~~~q~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF 407 (606)
..+|+++||||++...... ........+........ .+.......+...+++.+...... ..++|||
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~-----~~~vlVf 451 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIER-----NERVLVT 451 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHTT-----TCEEEEE
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHhc-----CCeEEEE
Confidence 3579999999987653222 11111111111111111 122333445556666666554422 5689999
Q ss_pred EcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccccccCCCCCCccEEEEecC-----CCCH
Q 007368 408 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL-----PNDI 482 (606)
Q Consensus 408 ~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~-----p~s~ 482 (606)
|+++..++.|++.|...++++..+|+++++.+|..+++.|+.|+++|||||+++++|+|+|+|++||++|. |.+.
T Consensus 452 ~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~ 531 (661)
T 2d7d_A 452 TLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSE 531 (661)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSH
T ss_pred ECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred hHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHH
Q 007368 483 DDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAEL 519 (606)
Q Consensus 483 ~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~ 519 (606)
++|+||+|||||. .+|.|++|+++.+..+.+.+.+.
T Consensus 532 ~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~ 567 (661)
T 2d7d_A 532 RSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINET 567 (661)
T ss_dssp HHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHH
Confidence 9999999999998 78999999999887766655543
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.1e-27 Score=221.74 Aligned_cols=157 Identities=37% Similarity=0.532 Sum_probs=143.7
Q ss_pred CccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHH
Q 007368 364 SSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELA 443 (606)
Q Consensus 364 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 443 (606)
.....+.|.+..+....|...|.+++.... ..++||||++++.++.+++.|...++.+..+||+|++.+|..+
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTEN-------PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcC-------CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 345668999999999999999999887642 5679999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHh
Q 007368 444 LRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQES 523 (606)
Q Consensus 444 l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~ 523 (606)
++.|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+||++|.|++|.|++|+++.+...++.+.+.+...
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888877655
Q ss_pred cCcc
Q 007368 524 NQEV 527 (606)
Q Consensus 524 ~q~v 527 (606)
.+++
T Consensus 158 ~~~~ 161 (163)
T 2hjv_A 158 IQKI 161 (163)
T ss_dssp CEEC
T ss_pred cCcc
Confidence 4443
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=7.1e-28 Score=224.86 Aligned_cols=161 Identities=30% Similarity=0.495 Sum_probs=143.8
Q ss_pred cCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHH
Q 007368 366 TDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALR 445 (606)
Q Consensus 366 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 445 (606)
...+.|.+..+....|...|.+++... +..++||||++++.++.+++.|...++.+..+||+|++.+|..+++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~ 75 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 75 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-------CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHH
Confidence 356888999999999999998888753 2567999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccC-ChhhHHHHHHHHHHhc
Q 007368 446 SFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN-NLSLARPLAELMQESN 524 (606)
Q Consensus 446 ~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~-~~~~~~~l~~~l~~~~ 524 (606)
.|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+||++|.|++|.+++|+++. +...++.+.+.+....
T Consensus 76 ~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (172)
T 1t5i_A 76 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 155 (172)
T ss_dssp HHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCE
T ss_pred HHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999999999999999999999999999999999999875 5677888888888888
Q ss_pred CcccHHHHH
Q 007368 525 QEVPAWLTR 533 (606)
Q Consensus 525 q~vp~~L~~ 533 (606)
+++|.++..
T Consensus 156 ~~~~~~~~~ 164 (172)
T 1t5i_A 156 SELPDEIDI 164 (172)
T ss_dssp EECC-----
T ss_pred hhCChhhch
Confidence 899988654
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=5.8e-28 Score=224.02 Aligned_cols=159 Identities=33% Similarity=0.581 Sum_probs=140.8
Q ss_pred CceeEEEEEeccch-hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHH
Q 007368 367 DLIVQRVEYVHESD-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALR 445 (606)
Q Consensus 367 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 445 (606)
..+.|.+..+.... |...|.+++... ...++||||++++.++.+++.|...++.+..+|++|++.+|..+++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 74 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMK 74 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-------TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 35778888888777 988888888763 2568999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcC
Q 007368 446 SFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQ 525 (606)
Q Consensus 446 ~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q 525 (606)
.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.|++|+++.+...+..+.+.+....+
T Consensus 75 ~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (165)
T 1fuk_A 75 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 154 (165)
T ss_dssp HHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCE
T ss_pred HHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred cccHHHH
Q 007368 526 EVPAWLT 532 (606)
Q Consensus 526 ~vp~~L~ 532 (606)
++|..+.
T Consensus 155 ~~~~~~~ 161 (165)
T 1fuk_A 155 ELPSDIA 161 (165)
T ss_dssp ECCSCCT
T ss_pred ccCccHH
Confidence 8876554
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=220.12 Aligned_cols=157 Identities=30% Similarity=0.510 Sum_probs=137.7
Q ss_pred ccCceeEEEEEeccch-hhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHH
Q 007368 365 STDLIVQRVEYVHESD-KRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELA 443 (606)
Q Consensus 365 ~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 443 (606)
....+.|.+..++... |...|.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|..+
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~ 76 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-------TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASI 76 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-------CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 3567889998888765 888777777542 26789999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcEEEEccccccCCCCCCccEEEEecCC------CCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHH
Q 007368 444 LRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP------NDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLA 517 (606)
Q Consensus 444 l~~F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p------~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~ 517 (606)
++.|++|+.+|||||+++++|||+|++++||+||+| .+..+|+||+||+||.|++|.|++|++..+...+..+.
T Consensus 77 ~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 156 (175)
T 2rb4_A 77 IQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQ 156 (175)
T ss_dssp HHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHH
T ss_pred HHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999988888888
Q ss_pred HHHHHhcCccc
Q 007368 518 ELMQESNQEVP 528 (606)
Q Consensus 518 ~~l~~~~q~vp 528 (606)
+.+....+++|
T Consensus 157 ~~~~~~~~~~~ 167 (175)
T 2rb4_A 157 DHFNSSIKQLN 167 (175)
T ss_dssp HHHTCCCEEEC
T ss_pred HHhcCcccccC
Confidence 88776665554
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=2.8e-26 Score=221.53 Aligned_cols=150 Identities=35% Similarity=0.540 Sum_probs=134.6
Q ss_pred eEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccC
Q 007368 370 VQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS 449 (606)
Q Consensus 370 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~ 449 (606)
.+....+....|...|.+++.... ..++||||++++.++.+++.|...++.+..+||+|++.+|+.+++.|++
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~ 79 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ 79 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHC-------CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCC-------CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 345566777889999998887542 6689999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcCc
Q 007368 450 GKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQE 526 (606)
Q Consensus 450 g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~ 526 (606)
|+.+|||||+++++|||||++++||+||+|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.+....++
T Consensus 80 g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 156 (212)
T 3eaq_A 80 GEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR 156 (212)
T ss_dssp SSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEE
T ss_pred CCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCee
Confidence 99999999999999999999999999999999999999999999999999999999999988888888777654433
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.3e-25 Score=227.20 Aligned_cols=146 Identities=35% Similarity=0.551 Sum_probs=129.3
Q ss_pred eeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhcc
Q 007368 369 IVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFK 448 (606)
Q Consensus 369 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~ 448 (606)
+.+.+..+....|...|.+++.... ..++||||++++.++.|++.|...++.+..+||+|++.+|+.+++.|+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-------~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~ 75 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFR 75 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-------CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh
Confidence 5677788888999999999887653 667999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHH
Q 007368 449 SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQ 521 (606)
Q Consensus 449 ~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~ 521 (606)
+|+.+|||||+++++|||||+|++||+||+|++.+.|+||+|||||.|++|.|++|+++.+...++.+.+.+.
T Consensus 76 ~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 76 QGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp HTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred cCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999988776666655544
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=1.1e-26 Score=216.57 Aligned_cols=151 Identities=35% Similarity=0.602 Sum_probs=136.1
Q ss_pred ceeEEEEEecc-chhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHh
Q 007368 368 LIVQRVEYVHE-SDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRS 446 (606)
Q Consensus 368 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 446 (606)
.+.|.+..++. ..|...|.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|..+++.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-------~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~ 75 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-------EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKR 75 (170)
Confidence 45666777776 77888888877653 25679999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceEEEEeccCChhhHHHHHHHHHHhcC
Q 007368 447 FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQ 525 (606)
Q Consensus 447 F~~g~~~iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~~~~~~~~~~~~~~~l~~~l~~~~q 525 (606)
|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+||++|.|++|.|++|++..+...+..+.+.+....+
T Consensus 76 f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (170)
T 2yjt_D 76 LTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIK 154 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999988888888877665443
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.9e-24 Score=207.60 Aligned_cols=170 Identities=19% Similarity=0.249 Sum_probs=122.7
Q ss_pred CCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHH-HHHH
Q 007368 161 KYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ-IHDE 239 (606)
Q Consensus 161 ~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Q-i~~~ 239 (606)
...+|+++|.++++.+++++++++++|||+|||++++++++..+...... ...+++||++|+++|+.| +.+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-------~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-------SEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-------TCCCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-------cCCCcEEEEECHHHHHHHHHHHH
Confidence 44589999999999999999999999999999999999998776654311 112459999999999999 8888
Q ss_pred HHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhcc------ccccceeEEEEecccccccCCCHH
Q 007368 240 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR------VSLQMIRYLALDEADRMLDMGFEP 313 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~------~~l~~~~~lVlDEah~~~~~gf~~ 313 (606)
++++... ++++..++++.....+...+...++|+|+||++|..++.... ..+.++++||+||||++.+.++..
T Consensus 103 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 103 FQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHH
T ss_pred HHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHH
Confidence 8888654 678888888776555444555568999999999999887653 567889999999999998876655
Q ss_pred HHH-HHHHhc---------CCCCCCCceEEEEecc
Q 007368 314 QIR-KIVQQM---------DMPPPGVRQTMLFSAT 338 (606)
Q Consensus 314 ~i~-~i~~~l---------~~~~~~~~q~ll~SAT 338 (606)
.+. .++... .....+..++|+||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 543 322221 1112256789999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.7e-22 Score=222.09 Aligned_cols=306 Identities=19% Similarity=0.184 Sum_probs=170.7
Q ss_pred CCCCCCHHHHhHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHH
Q 007368 161 KYVKPTPVQRHAIPI----SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 236 (606)
Q Consensus 161 ~~~~p~~~Q~~ai~~----i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi 236 (606)
+| +|+|+|.+++.. +..+++++++||||+|||++|++|++.. .+++||++||++|+.|+
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------------TCEEEEEESCHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------------CCcEEEEcCCHHHHHHH
Confidence 45 799999998654 5678999999999999999999998642 13599999999999999
Q ss_pred HHHHHHhhhcCCcEEEEEECCCC--------hH------------------------HHH---------------HHHhc
Q 007368 237 HDEAKKFSYQTGVKVVVAYGGAP--------IN------------------------QQL---------------RELER 269 (606)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~gg~~--------~~------------------------~~~---------------~~l~~ 269 (606)
.+++.++ ++++..+.|-.. .. ..+ +....
T Consensus 68 ~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~ 143 (540)
T 2vl7_A 68 YKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK 143 (540)
T ss_dssp HHHHGGG----TCCEEEC---------------------------------------------------------CTTGG
T ss_pred HHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh
Confidence 9998875 344444332110 00 000 11123
Q ss_pred CCcEEEecHHHHHHHHHhcccc-------ccceeEEEEecccccccCC-------CHHHHHH------------------
Q 007368 270 GVDILVATPGRLVDLLERARVS-------LQMIRYLALDEADRMLDMG-------FEPQIRK------------------ 317 (606)
Q Consensus 270 ~~~Ilv~Tp~~L~~~l~~~~~~-------l~~~~~lVlDEah~~~~~g-------f~~~i~~------------------ 317 (606)
.++|||+|+..|++.+....+. +....+|||||||+|.+.. -..++..
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~ 223 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKK 223 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHH
Confidence 5799999999999866543322 4567899999999984310 0000000
Q ss_pred -------HHHhcCC-----------------------------------------------------------------C
Q 007368 318 -------IVQQMDM-----------------------------------------------------------------P 325 (606)
Q Consensus 318 -------i~~~l~~-----------------------------------------------------------------~ 325 (606)
+...+.. .
T Consensus 224 l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 303 (540)
T 2vl7_A 224 VKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVK 303 (540)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 0000000 0
Q ss_pred CCCC--------ce----EEEEeccChHHHHHHHHHhhcCcEEEEeccccCccCceeEEEEEe--cc-chh----hhHHH
Q 007368 326 PPGV--------RQ----TMLFSATFPKEIQKLASDFLANYVFLAVGRVGSSTDLIVQRVEYV--HE-SDK----RSHLM 386 (606)
Q Consensus 326 ~~~~--------~q----~ll~SAT~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~~k----~~~l~ 386 (606)
.|.. .. +|++|||+...+. +...| +..+.. .. ...+.+... +. .+. ...+.
T Consensus 304 ~P~~~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f-----~~~~~~---~~-g~~~~~~~~~l~s~f~~r~~~~~~~~ 373 (540)
T 2vl7_A 304 VPSDVNQLIEDALNVKTFKVLMSGTLPESLT-LTNSY-----KIVVNE---SY-GRGEYYYCPNVTSELRKRNSNIPIYS 373 (540)
T ss_dssp ECSCHHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEE-----EEECCC---C--CCCEEEECTTCCCCGGGHHHHHHHHH
T ss_pred ehHHHHHHHHHhcCccCCeEEEcccCCCCcc-cchhc-----CCchhh---ee-cCCcceeccccCCCcccccCHHHHHH
Confidence 0000 11 3666666654100 00001 011100 00 001111111 00 111 13455
Q ss_pred HHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE--EccccccC
Q 007368 387 DLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV--ATDVAARG 464 (606)
Q Consensus 387 ~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV--aT~v~~~G 464 (606)
+.+...... ..+.+|||++|...++.+++.|.. + .+.+++.. .+|+++++.|+.+. .||+ +|..+.+|
T Consensus 374 ~~l~~~~~~----~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EG 443 (540)
T 2vl7_A 374 ILLKRIYEN----SSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHT----CSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------
T ss_pred HHHHHHHHh----CCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecc
Confidence 555554432 366799999999999999988854 2 34556654 47889999999864 6777 78999999
Q ss_pred CCCCC----ccEEEEecCCCC-H-----------------------------hHHHHHhhccccCCCcceEEEEecc
Q 007368 465 LDIPH----VAHVVNFDLPND-I-----------------------------DDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 465 lDip~----v~~VI~~d~p~s-~-----------------------------~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
||+|+ +++||++++|.. + ....|.+||+-|..++--++++++.
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 99997 899999999842 1 2245899999997554334555543
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=199.33 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=132.7
Q ss_pred CHHHHHHHHhCCCCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccc
Q 007368 150 GEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPT 229 (606)
Q Consensus 150 ~~~l~~~l~~~~~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Pt 229 (606)
++.+.+.+.......++++|+++++.+..+++++++|+||||||+++.++++..+..... ...+.+||++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------~~~~~~l~~~p~ 118 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------AAECNIVVTQPR 118 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------GGGCEEEEEESS
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------CCceEEEEeccc
Confidence 344444444444556899999999999999999999999999999999998887665431 123569999999
Q ss_pred hHHHHHHHHHHHHhhh-cCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEeccccc-c
Q 007368 230 RELSSQIHDEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM-L 307 (606)
Q Consensus 230 r~La~Qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~-~ 307 (606)
++|+.|+++.+..... ..+..+........ ......++|+|+||++|++++.. .++++++|||||||++ +
T Consensus 119 ~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~ 190 (235)
T 3llm_A 119 RISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDI 190 (235)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCH
T ss_pred hHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCc
Confidence 9999999988876542 22333332221111 00113478999999999999876 4899999999999996 7
Q ss_pred cCCCH-HHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhhcCc
Q 007368 308 DMGFE-PQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANY 354 (606)
Q Consensus 308 ~~gf~-~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l~~~ 354 (606)
+++|. ..++.++... +..|+++||||++.+. +.+.|...+
T Consensus 191 ~~~~~~~~l~~i~~~~-----~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 191 NTDFLLVVLRDVVQAY-----PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHHHHHHHHHHC-----TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred chHHHHHHHHHHHhhC-----CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 77776 4566666554 4689999999999875 555544444
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=5e-20 Score=203.13 Aligned_cols=314 Identities=14% Similarity=0.077 Sum_probs=199.1
Q ss_pred CCCHHHHhHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007368 164 KPTPVQRHAIPI----SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai~~----i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
+++|+|.+++.. +..+++++++||||+|||++|++|++.. .+++||++||++|+.|+.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------KPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------CSEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------CCeEEEEcCCHHHHHHHHHH
Confidence 689999997764 4568999999999999999999999861 24599999999999999999
Q ss_pred HHHhhhcCCcEEEEEECCCC---------------------------------hHHHH------------------HHHh
Q 007368 240 AKKFSYQTGVKVVVAYGGAP---------------------------------INQQL------------------RELE 268 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~gg~~---------------------------------~~~~~------------------~~l~ 268 (606)
+.++....+++++++.|..+ ..... +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 99987666788887766321 11111 2334
Q ss_pred cCCcEEEecHHHHHHHHHhccccc-cceeEEEEecccccccCC-------------------------------------
Q 007368 269 RGVDILVATPGRLVDLLERARVSL-QMIRYLALDEADRMLDMG------------------------------------- 310 (606)
Q Consensus 269 ~~~~Ilv~Tp~~L~~~l~~~~~~l-~~~~~lVlDEah~~~~~g------------------------------------- 310 (606)
..++|||+||..|++...+..+.+ ....+|||||||+|.+ -
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~ 225 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLR 225 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998765544333 4678999999999876 1
Q ss_pred ------------------CHHHHHHHHH----------------------------h--------------cC-CC----
Q 007368 311 ------------------FEPQIRKIVQ----------------------------Q--------------MD-MP---- 325 (606)
Q Consensus 311 ------------------f~~~i~~i~~----------------------------~--------------l~-~~---- 325 (606)
+...+..+.. . +. .+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~ 305 (551)
T 3crv_A 226 EVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEIS 305 (551)
T ss_dssp TSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTH
T ss_pred HHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHH
Confidence 0011111110 0 00 00
Q ss_pred -----CCCC-ceEEEEeccChHHHHHHHHHhhcC-cEEE--EeccccCccCceeEEEEEecc----------chhhhHHH
Q 007368 326 -----PPGV-RQTMLFSATFPKEIQKLASDFLAN-YVFL--AVGRVGSSTDLIVQRVEYVHE----------SDKRSHLM 386 (606)
Q Consensus 326 -----~~~~-~q~ll~SAT~~~~i~~l~~~~l~~-~~~~--~~~~~~~~~~~i~~~~~~~~~----------~~k~~~l~ 386 (606)
-... +.+|++|||+.. ...+.+.+--+ .... ......+.. ..+...++.. ..-...+.
T Consensus 306 ~~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~ 382 (551)
T 3crv_A 306 YYLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYA 382 (551)
T ss_dssp HHHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHH
T ss_pred HHHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHH
Confidence 0122 678999999976 33333332112 2210 011112222 2222223221 11134455
Q ss_pred HHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc--cccccC
Q 007368 387 DLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT--DVAARG 464 (606)
Q Consensus 387 ~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT--~v~~~G 464 (606)
+.+...... ..+.+|||++|.+.++.+++. .+.++..=..+++ +.++++.|+...-.||++| ..+.+|
T Consensus 383 ~~i~~l~~~----~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EG 452 (551)
T 3crv_A 383 DYLLKIYFQ----AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEG 452 (551)
T ss_dssp HHHHHHHHH----CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCS
T ss_pred HHHHHHHHh----CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccc
Confidence 555554432 266899999999999988872 3333333222444 4567788854445799998 699999
Q ss_pred CCCC-----CccEEEEecCCCC--------------------H----------hHHHHHhhccccCCCcceEEEEecc
Q 007368 465 LDIP-----HVAHVVNFDLPND--------------------I----------DDYVHRIGRTGRAGKSGLATAFFNE 507 (606)
Q Consensus 465 lDip-----~v~~VI~~d~p~s--------------------~----------~~y~QRiGR~gR~g~~G~~~~~~~~ 507 (606)
||+| .+..||...+|.. . ....|-+||+-|..++--++++++.
T Consensus 453 iD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 453 IELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp SCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred ccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 9999 4788998877641 1 1124899999998665445555554
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=2.8e-22 Score=202.38 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=123.9
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007368 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
.+|+++|.++++.++.+++.+++++||+|||+++++++...+.... .++|||+||++|+.||++++++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS------------SEEEEECSSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC------------CeEEEEECCHHHHHHHHHHHHH
Confidence 3799999999999998888999999999999999888776554221 2499999999999999999999
Q ss_pred hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhc
Q 007368 243 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 243 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
+.......+..++++..... .....++|+|+||++|... ....+.++++||+||||++.+ +.+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~ 249 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC
T ss_pred hcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh
Confidence 97666677777777765432 1224589999999987653 223578899999999999874 4677777766
Q ss_pred CCCCCCCceEEEEeccChHHHH
Q 007368 323 DMPPPGVRQTMLFSATFPKEIQ 344 (606)
Q Consensus 323 ~~~~~~~~q~ll~SAT~~~~i~ 344 (606)
....++++||||++....
T Consensus 250 ----~~~~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 250 ----NNCMFKFGLSGSLRDGKA 267 (282)
T ss_dssp ----TTCCEEEEECSSCCTTST
T ss_pred ----hcCCeEEEEeCCCCCcch
Confidence 457899999999976543
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.81 E-value=1.3e-18 Score=193.36 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=67.6
Q ss_pred CCCHHHHhHHH----HHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHH
Q 007368 164 KPTPVQRHAIP----ISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 239 (606)
Q Consensus 164 ~p~~~Q~~ai~----~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~ 239 (606)
+|+|.|.+.+. .+..+++++++||||+|||++|++|++..+.... ++++|++||++|+.|+.++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~------------~kvli~t~T~~l~~Qi~~e 70 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK------------LKVLYLVRTNSQEEQVIKE 70 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT------------CEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC------------CeEEEECCCHHHHHHHHHH
Confidence 68999999886 4567899999999999999999999998876432 3599999999999999999
Q ss_pred HHHhhhcCCcEEEEEEC
Q 007368 240 AKKFSYQTGVKVVVAYG 256 (606)
Q Consensus 240 ~~~~~~~~~~~~~~~~g 256 (606)
++++.....++++++.|
T Consensus 71 l~~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 71 LRSLSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHHHHSCCCEEECCC
T ss_pred HHHHhhccCeEEEEEEC
Confidence 99987766777766555
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=3.5e-19 Score=177.89 Aligned_cols=128 Identities=13% Similarity=0.218 Sum_probs=101.7
Q ss_pred eccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-CCCcEEeeCccCHHHHHHHHHhccCC-CCc
Q 007368 376 VHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQERELALRSFKSG-KTP 453 (606)
Q Consensus 376 ~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~ 453 (606)
.....|...|.++|...... ..++||||+++..++.|.+.|... ++.+..+||++++.+|.+++++|+++ ..+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~-----~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 166 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDE-----GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVK 166 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCC
T ss_pred cccCHHHHHHHHHHHHHHhC-----CCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCC
Confidence 45678999999999887643 678999999999999999999885 99999999999999999999999998 677
Q ss_pred -EEEEccccccCCCCCCccEEEEecCCCCHhHHHHHhhccccCCCcceE--EEEeccC
Q 007368 454 -ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA--TAFFNEN 508 (606)
Q Consensus 454 -iLVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QRiGR~gR~g~~G~~--~~~~~~~ 508 (606)
+||+|+++++|||++.+++||+||+|||+..|+||+||++|.|+++.+ +.|++..
T Consensus 167 v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 167 FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp EEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred EEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 799999999999999999999999999999999999999999998765 5556554
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=6.4e-19 Score=172.86 Aligned_cols=139 Identities=22% Similarity=0.159 Sum_probs=109.3
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007368 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
.+|+++|.++++.++++++++++++||+|||++++.++... ...+||++|+++|+.||.+++++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------------~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------------STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------------CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999988776542 12399999999999999999988
Q ss_pred hhhcCCcE-EEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007368 243 FSYQTGVK-VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 243 ~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
| +++ +..+.++.. ...+|+|+|++.|...+.. ....+++|||||||++.+..+ ..++..
T Consensus 156 ~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~ 215 (237)
T 2fz4_A 156 F----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQM 215 (237)
T ss_dssp G----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHT
T ss_pred C----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHh
Confidence 5 566 666666553 2479999999998876542 134689999999999987654 345555
Q ss_pred cCCCCCCCceEEEEeccChHH
Q 007368 322 MDMPPPGVRQTMLFSATFPKE 342 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT~~~~ 342 (606)
+ ...++|+||||++..
T Consensus 216 ~-----~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 216 S-----IAPFRLGLTATFERE 231 (237)
T ss_dssp C-----CCSEEEEEEESCC--
T ss_pred c-----cCCEEEEEecCCCCC
Confidence 4 246789999998764
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.88 E-value=1.8e-09 Score=119.87 Aligned_cols=146 Identities=19% Similarity=0.247 Sum_probs=89.1
Q ss_pred CHHHHhHHHHHhcCCCEEEEccCCCchh--HHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 166 TPVQRHAIPISVAGRDLMACAQTGSGKT--AAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 166 ~~~Q~~ai~~i~~~~d~li~a~TGsGKT--~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
++.|++|++.++.++.+++++++||||| ++++++++..+... .++++++++||.++|.++.+.+..+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-----------~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-----------ERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-----------CCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-----------CCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999999999999999999999 45555555433111 1245999999999999999988776
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcC
Q 007368 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 323 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~ 323 (606)
....++..... ...+ .+...+ ..++-.+|+... +.........+++||+|||+ |++ .+.+..++..+
T Consensus 220 ~~~l~l~~~~~-~~~~--~~~~Ti---h~ll~~~~~~~~--~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l- 286 (608)
T 1w36_D 220 LRQLPLTDEQK-KRIP--EDASTL---HRLLGAQPGSQR--LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDAL- 286 (608)
T ss_dssp HHHSSCCSCCC-CSCS--CCCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTC-
T ss_pred HhcCCCCHHHH-hccc--hhhhhh---HhhhccCCCchH--HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhC-
Confidence 54433321110 0000 000000 012222333211 11112223378999999999 555 46778888877
Q ss_pred CCCCCCceEEEEecc
Q 007368 324 MPPPGVRQTMLFSAT 338 (606)
Q Consensus 324 ~~~~~~~q~ll~SAT 338 (606)
+...|+|++--.
T Consensus 287 ---~~~~~liLvGD~ 298 (608)
T 1w36_D 287 ---PDHARVIFLGDR 298 (608)
T ss_dssp ---CTTCEEEEEECT
T ss_pred ---CCCCEEEEEcch
Confidence 567788887654
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.13 E-value=9.5e-06 Score=86.92 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=51.1
Q ss_pred hCCCCCCCHHHHhHHHHHhcC-----CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHH
Q 007368 159 RCKYVKPTPVQRHAIPISVAG-----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELS 233 (606)
Q Consensus 159 ~~~~~~p~~~Q~~ai~~i~~~-----~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La 233 (606)
.+.|..|++-|++++..++.. ..+++.|+.|||||.+ +..++..+..... ..+++++||...+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~-----------~~il~~a~T~~Aa 87 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE-----------TGIILAAPTHAAK 87 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC-----------CCEEEEESSHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC-----------ceEEEecCcHHHH
Confidence 345778999999999876442 4899999999999975 4455555554321 1399999999888
Q ss_pred HHHHHHH
Q 007368 234 SQIHDEA 240 (606)
Q Consensus 234 ~Qi~~~~ 240 (606)
..+.+.+
T Consensus 88 ~~l~~~~ 94 (459)
T 3upu_A 88 KILSKLS 94 (459)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 7766554
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.11 E-value=8.5e-06 Score=89.44 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=77.3
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+++.|++++..++..+.+++.++.|+|||++ +..++..+.... ..+++++||...+..+.+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~g------------~~Vl~~ApT~~Aa~~L~e~~~-- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESLG------------LEVGLCAPTGKAARRLGEVTG-- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHTT------------CCEEEEESSHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhcC------------CeEEEecCcHHHHHHhHhhhc--
Confidence 58999999999999999999999999999985 333444333221 239999999999887765432
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHH----HHhccccccceeEEEEecccccccCCCHHHHHHHH
Q 007368 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDL----LERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 319 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~----l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~ 319 (606)
.. ..|..+|+.. +.........+++||+||++++. ...+..++
T Consensus 254 -----~~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll 300 (574)
T 3e1s_A 254 -----RT------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLL 300 (574)
T ss_dssp -----SC------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHH
T ss_pred -----cc------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHH
Confidence 11 1121111110 01111233467899999999653 24666666
Q ss_pred HhcCCCCCCCceEEEEe
Q 007368 320 QQMDMPPPGVRQTMLFS 336 (606)
Q Consensus 320 ~~l~~~~~~~~q~ll~S 336 (606)
..+ +...+++++-
T Consensus 301 ~~~----~~~~~lilvG 313 (574)
T 3e1s_A 301 AAV----PPGARVLLVG 313 (574)
T ss_dssp TTS----CTTCEEEEEE
T ss_pred HhC----cCCCEEEEEe
Confidence 665 3445566653
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.10 E-value=1.3e-05 Score=89.25 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007368 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
+..+++.|++|+..++...-++|.+|+|+|||.+. ..++..+.... ..++|+++||...+.++.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~~-----------~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG-----------NGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTSS-----------SCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHcC-----------CCeEEEEeCcHHHHHHHHHHHH
Confidence 34689999999999888888999999999999864 34444444321 1249999999999999998887
Q ss_pred Hh
Q 007368 242 KF 243 (606)
Q Consensus 242 ~~ 243 (606)
+.
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=2.3e-05 Score=89.27 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=55.4
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007368 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
+..+++.|++|+..++...-++|.+|.|||||.+. ..++..+.+... .++|+++||...+.++.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~~~-----------~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKIHK-----------DRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHHHC-----------CCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhCCC-----------CeEEEEcCcHHHHHHHHHHHH
Confidence 34689999999999988778899999999999864 344444543211 239999999999999999887
Q ss_pred Hh
Q 007368 242 KF 243 (606)
Q Consensus 242 ~~ 243 (606)
+.
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 75
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.05 E-value=0.00036 Score=77.98 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=52.8
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007368 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
..+++-|++++. .....++|.|+.|||||.+.+--+ .+++...... .-.+|++++|+..+.++.+.+.+
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri-~~l~~~~~~~--------~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRI-AWLMSVENCS--------PYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHH-HHHHHTSCCC--------GGGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHH-HHHHHhCCCC--------hhhEEEEeccHHHHHHHHHHHHH
Confidence 368999999997 346789999999999999744444 3444432111 01399999999999999999887
Q ss_pred hh
Q 007368 243 FS 244 (606)
Q Consensus 243 ~~ 244 (606)
+.
T Consensus 77 ~~ 78 (647)
T 3lfu_A 77 LM 78 (647)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 100
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.02 E-value=9.8e-06 Score=90.68 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=52.7
Q ss_pred CCCHHHHhHHHHHhcCC-CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007368 164 KPTPVQRHAIPISVAGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~-d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
.+++-|++||..++..+ -.||++|.|||||.+.+ -++..+.+.. .++||++||..-+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~~------------~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQG------------LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHTT------------CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhCC------------CeEEEEcCchHHHHHHHHHHHh
Confidence 58999999999888766 46899999999999744 3444444432 2499999999999999888876
Q ss_pred h
Q 007368 243 F 243 (606)
Q Consensus 243 ~ 243 (606)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 4
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.96 E-value=5.6e-05 Score=75.62 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=99.4
Q ss_pred ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE
Q 007368 377 HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 456 (606)
Q Consensus 377 ~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 456 (606)
..+.|+..|..+|...... ..++|||++..+..+.|.++|...++....+.|.....++. . ....+.|.+
T Consensus 106 ~~SGKf~~L~~LL~~l~~~-----~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~L 175 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEY-----ETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHL 175 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTS-----CEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEE
T ss_pred HcCccHHHHHHHHHHHHhC-----CCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEE
Confidence 4678988888888876543 77999999999999999999999999999999985543322 1 234455555
Q ss_pred EccccccCCC-----CCCccEEEEecCCCCHhHH-HHHhhccccCC----CcceEEEEeccCChhhHHHHHHHHHHhcCc
Q 007368 457 ATDVAARGLD-----IPHVAHVVNFDLPNDIDDY-VHRIGRTGRAG----KSGLATAFFNENNLSLARPLAELMQESNQE 526 (606)
Q Consensus 457 aT~v~~~GlD-----ip~v~~VI~~d~p~s~~~y-~QRiGR~gR~g----~~G~~~~~~~~~~~~~~~~l~~~l~~~~q~ 526 (606)
.|....-|++ ....+.||.||..+|+..- +|.+-|+.|.+ ++-.++.|++.+-.+... ..+-+.....
T Consensus 176 ltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~--l~~~~~~~~~ 253 (328)
T 3hgt_A 176 FSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR--LFFGKKFDKN 253 (328)
T ss_dssp EESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH--HHHHHHTCTT
T ss_pred EECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH--HHccCCCCcc
Confidence 5665555665 6789999999999999885 99999998873 345677888765443211 1111112234
Q ss_pred ccHHHHHHHHh
Q 007368 527 VPAWLTRYASR 537 (606)
Q Consensus 527 vp~~L~~~~~~ 537 (606)
-..||.++...
T Consensus 254 ~~~~l~k~i~a 264 (328)
T 3hgt_A 254 SREYLENVTAA 264 (328)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45566666543
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.91 E-value=3.5e-05 Score=87.69 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=55.0
Q ss_pred CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007368 162 YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 162 ~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
...+++.|++|+..++...-++|.++.|+|||.+. ..++..+.... ..++|+++||...+.++.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~~-----------~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG-----------NGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTTC-----------SSCEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHcC-----------CCcEEEEcCcHHHHHHHHHHHH
Confidence 34689999999999888888999999999999863 44455554321 1249999999999999988887
Q ss_pred Hh
Q 007368 242 KF 243 (606)
Q Consensus 242 ~~ 243 (606)
+.
T Consensus 422 ~~ 423 (800)
T 2wjy_A 422 QT 423 (800)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.21 E-value=0.0045 Score=63.94 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=54.8
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..++... +..+++++|+++.|..+.+.++.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----------g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-----------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 689999999987755577889999999999976655554443311 235999999999999888888877
Q ss_pred hh
Q 007368 244 SY 245 (606)
Q Consensus 244 ~~ 245 (606)
..
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.12 E-value=0.0017 Score=59.48 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=21.9
Q ss_pred CHHHHhHHHHHh---------cCCCEEEEccCCCchhHH
Q 007368 166 TPVQRHAIPISV---------AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 166 ~~~Q~~ai~~i~---------~~~d~li~a~TGsGKT~a 195 (606)
.+-|++++..+. .++.+++.+|+|+|||+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 445666655432 368899999999999984
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.80 E-value=0.013 Score=64.39 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=56.3
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.|+|+|+..+..+...+-+++..+-++|||.+....++..++... +..+++++|++..|..+.+.++.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----------~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 589999999987755677899999999999976655554444321 224999999999999999888877
Q ss_pred hhcC
Q 007368 244 SYQT 247 (606)
Q Consensus 244 ~~~~ 247 (606)
....
T Consensus 232 i~~~ 235 (592)
T 3cpe_A 232 IELL 235 (592)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 6443
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.57 E-value=0.0064 Score=63.63 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=63.2
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCC
Q 007368 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAP 259 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~ 259 (606)
+-.++.++.|||||.... .++... ..+|++||++++..|.+.+.+. +. .
T Consensus 162 ~v~~I~G~aGsGKTt~I~-----~~~~~~-------------~~lVlTpT~~aa~~l~~kl~~~----~~--------~- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL-----SRVNFE-------------EDLILVPGRQAAEMIRRRANAS----GI--------I- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHH-----HHCCTT-------------TCEEEESCHHHHHHHHHHHTTT----SC--------C-
T ss_pred cEEEEEcCCCCCHHHHHH-----HHhccC-------------CeEEEeCCHHHHHHHHHHhhhc----Cc--------c-
Confidence 457899999999998432 222110 1799999999999988877542 10 0
Q ss_pred hHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007368 260 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 260 ~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
.....-|.|.+.++- .......-.+++||+|||- |++.+ .+..++..+ +. .+++++--+
T Consensus 211 ---------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~----~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHTG---CVNFLVEMS----LC-DIAYVYGDT 269 (446)
T ss_dssp ---------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCHH---HHHHHHHHT----TC-SEEEEEECT
T ss_pred ---------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCHH---HHHHHHHhC----CC-CEEEEecCc
Confidence 012344777766543 2222222347899999998 44433 344444443 22 445555433
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.44 E-value=0.012 Score=66.35 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=70.3
Q ss_pred CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHH
Q 007368 163 VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKK 242 (606)
Q Consensus 163 ~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~ 242 (606)
..+++-|++|+.. ....++|.|..|||||.+.+.-+. +++...... ...+|+|+.|+..|.++.+.+.+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~-~ll~~~~~~--------p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIA-YLMAEKHVA--------PWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHH-HHHHTTCCC--------GGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHH-HHHHhcCCC--------HHHeEEEeccHHHHHHHHHHHHH
Confidence 3689999999975 357899999999999997444444 444322111 01399999999999999998887
Q ss_pred hhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccc-ccc-ceeEEEEeccc
Q 007368 243 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQ-MIRYLALDEAD 304 (606)
Q Consensus 243 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~-~l~-~~~~lVlDEah 304 (606)
+.... ...+-|+|...|...+-+... .+. .-.+.|+|+.+
T Consensus 79 ~l~~~----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 79 LLGGA----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp HHGGG----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred Hhccc----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 63210 024678888877544433211 110 12256777765
No 108
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.37 E-value=0.0072 Score=66.47 Aligned_cols=112 Identities=23% Similarity=0.319 Sum_probs=74.7
Q ss_pred CCCHHHHhHHHHHhc--CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHH
Q 007368 164 KPTPVQRHAIPISVA--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAK 241 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~--~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~ 241 (606)
.+|.-|.+++..++. ....++.|+-|.|||++.-+. +..+.. .++|++|+.+-+..+.+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~-~a~~~~---------------~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQL-ISRIAG---------------RAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHH-HHHSSS---------------CEEEECSSCCSCHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHH-HHHHHh---------------CcEEECCCHHHHHHHHHHhh
Confidence 589999999988876 345789999999999754333 333321 17999999987765444322
Q ss_pred HhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHh
Q 007368 242 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 321 (606)
Q Consensus 242 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~ 321 (606)
+ .|-+..|..+.. .+...++||||||=.+- .+.+..++..
T Consensus 239 ~-----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~ 278 (671)
T 2zpa_A 239 E-----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR 278 (671)
T ss_dssp G-----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT
T ss_pred C-----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh
Confidence 1 144456655432 24468899999998653 3666666654
Q ss_pred cCCCCCCCceEEEEeccC
Q 007368 322 MDMPPPGVRQTMLFSATF 339 (606)
Q Consensus 322 l~~~~~~~~q~ll~SAT~ 339 (606)
. ..++||.|+
T Consensus 279 ~--------~~v~~~tTv 288 (671)
T 2zpa_A 279 F--------PRTLLTTTV 288 (671)
T ss_dssp S--------SEEEEEEEB
T ss_pred C--------CeEEEEecC
Confidence 3 257888885
No 109
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.24 E-value=0.0074 Score=67.62 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+++-|+++|.. ....++|.|..|||||.+.+--+. +++...... ...+|+|+.|+..|.++.+.+.+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~-~ll~~~~~~--------~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIA-HLIRGCGYQ--------ARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHH-HHHHHHCCC--------GGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHH-HHHHhcCCC--------HHHeEEEeccHHHHHHHHHHHHHH
Confidence 479999999975 367899999999999997544444 344332111 013999999999999999998876
Q ss_pred h
Q 007368 244 S 244 (606)
Q Consensus 244 ~ 244 (606)
.
T Consensus 71 l 71 (673)
T 1uaa_A 71 L 71 (673)
T ss_dssp S
T ss_pred c
Confidence 3
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.19 E-value=0.0085 Score=53.16 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.++.+++.+++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999983
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.051 Score=54.51 Aligned_cols=43 Identities=5% Similarity=0.082 Sum_probs=26.1
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEeccC
Q 007368 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF 339 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~ 339 (606)
...-+|||||+|.+.+ ...+..++..... .....-+|+.++|+
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~-~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISS-KNSKLSIICVGGHN 173 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHC-SSCCEEEEEECCSS
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccc-cCCcEEEEEEecCc
Confidence 3456899999999883 2444445543211 12344567778885
No 112
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.96 E-value=0.061 Score=52.58 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
..+++.+|+|+|||+.+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999853
No 113
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.90 E-value=0.0022 Score=59.22 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=24.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccc
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPT 229 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Pt 229 (606)
++-.++.+++|+|||+..+- ++..+.... ..++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~~g------------~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKLGK------------KKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHHTT------------CEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHHCC------------CeEEEEeec
Confidence 55678999999999996443 333332221 238888886
No 114
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.72 E-value=0.088 Score=53.95 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
...+++.+|+|+|||+.
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 47899999999999984
No 115
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.69 E-value=0.013 Score=54.32 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=25.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccch
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTR 230 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr 230 (606)
++-.++++++|+|||++.+ -++.++.... -+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~~g------------~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKIAK------------QKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHHTT------------CCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHHCC------------CEEEEEEecc
Confidence 4567889999999998644 3333333221 2389998873
No 116
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.58 E-value=0.011 Score=58.32 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
..+.+++.+|+|+|||+.
T Consensus 50 ~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCSEEEEESSSSSSHHHH
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 457899999999999984
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.53 E-value=0.052 Score=54.64 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
...+++.+|+|+|||+.
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 36899999999999984
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.42 E-value=0.071 Score=55.80 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=37.7
Q ss_pred cceeEEEEecccccc---cCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhh
Q 007368 293 QMIRYLALDEADRML---DMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFL 351 (606)
Q Consensus 293 ~~~~~lVlDEah~~~---~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l 351 (606)
..+++||+|++-++. +..+..++..+...+ .++.-++.++|+...+....++.|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~----~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL----KPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh----CCcceEEEEeCccchHHHHHHHHHh
Confidence 578899999998653 444566777777666 3455677888887665555665554
No 119
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.31 E-value=0.24 Score=45.88 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
..+++.+++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999984
No 120
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.09 E-value=0.16 Score=50.97 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+++.+|+|+|||+.
T Consensus 52 ~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 52 SGILLYGPPGTGKSYL 67 (322)
T ss_dssp CEEEEECSSSSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999984
No 121
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.08 E-value=0.078 Score=53.69 Aligned_cols=33 Identities=33% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCHHHHhHHHHHh----cCC---CEEEEccCCCchhHHhH
Q 007368 165 PTPVQRHAIPISV----AGR---DLMACAQTGSGKTAAFC 197 (606)
Q Consensus 165 p~~~Q~~ai~~i~----~~~---d~li~a~TGsGKT~a~l 197 (606)
+.|+|.+++..+. .++ .+++.+|.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888876543 342 48999999999998544
No 122
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.07 E-value=0.027 Score=53.54 Aligned_cols=90 Identities=13% Similarity=0.188 Sum_probs=48.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCC
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGA 258 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~ 258 (606)
+.-+++.+++|+|||++.+-. +.++.... -+++++.|...- . . ...+....++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~-~~r~~~~g------------~kVli~~~~~d~--r-~--~~~i~srlG~~~------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR-LHRLEYAD------------VKYLVFKPKIDT--R-S--IRNIQSRTGTSL------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH-HHHHHHTT------------CCEEEEEECCCG--G-G--CSSCCCCCCCSS-------
T ss_pred cEEEEEECCCCCcHHHHHHHH-HHHHHhcC------------CEEEEEEeccCc--h-H--HHHHHHhcCCCc-------
Confidence 456788999999999964443 33333221 138888775421 0 0 001111111110
Q ss_pred ChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEeccccc
Q 007368 259 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 306 (606)
Q Consensus 259 ~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~ 306 (606)
..+.+.+...+++.+.... .-..+++|||||++.+
T Consensus 67 ------------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ------------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ------------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ------------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1233455566666655432 2345789999999964
No 123
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.04 E-value=0.017 Score=54.20 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=24.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccch
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTR 230 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr 230 (606)
++-.++++++|+|||++.+--+. ++.... -+++|+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~-r~~~~g------------~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR-RTQFAK------------QHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH-HHHHTT------------CCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHH-HHHHCC------------CEEEEEEecc
Confidence 34567899999999987544433 332221 2389998864
No 124
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.96 E-value=0.034 Score=66.58 Aligned_cols=71 Identities=25% Similarity=0.261 Sum_probs=53.2
Q ss_pred CCCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 164 KPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 164 ~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
++|+-|.++|..- +.+++|.|..|||||.+.+--++..+....... ..-.+|||++|+..|..+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~-------~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPI-------DVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCC-------CGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCC-------CccceEEEeccHHHHHHHHHHHHHH
Confidence 6899999999653 789999999999999986655555544321000 0113999999999999999888764
No 125
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.91 E-value=0.021 Score=53.54 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=25.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccch
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTR 230 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr 230 (606)
.+.-.++++++|||||+..+- .+.++.... .+++|+.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr-~~~r~~~~g------------~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIR-RLRRGIYAK------------QKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHH-HHHHHHHTT------------CCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHH-HHHHHHHcC------------CceEEEEecc
Confidence 345678999999999985443 333333221 2389998854
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.87 E-value=0.12 Score=47.93 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+++.+++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999984
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.84 E-value=0.12 Score=54.46 Aligned_cols=45 Identities=13% Similarity=0.320 Sum_probs=26.2
Q ss_pred ceeEEEEecccccccC-CCHHHHHHHHHhcCCCCCCCceEEEEeccChH
Q 007368 294 MIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPK 341 (606)
Q Consensus 294 ~~~~lVlDEah~~~~~-gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~ 341 (606)
..++|||||+|.+... .....+..++..+. ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~---~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH---TTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH---HCCCeEEEEECCCHH
Confidence 5678999999998753 23344555554431 233456655544344
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.80 E-value=0.14 Score=52.61 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+++.+++|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5699999999999985
No 129
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.76 E-value=0.11 Score=52.01 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
.+.+++.+++|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999984
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.74 E-value=0.047 Score=51.80 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
..+.+++.+|+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357899999999999984
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.71 E-value=0.089 Score=53.81 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
...+++.+++|+|||+.
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999984
No 132
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.57 E-value=0.11 Score=58.82 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=64.4
Q ss_pred CceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc-cccccCCCCCCccEEEE
Q 007368 401 QSLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVAT-DVAARGLDIPHVAHVVN 475 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-~v~~~GlDip~v~~VI~ 475 (606)
..++||.++++.-+..+++.+.. .++.+..+||+++..++..+++.+.+|..+|+|+| ..+...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 45799999999988888776654 37899999999999999999999999999999999 55666788888888874
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.56 E-value=0.053 Score=54.00 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
..+++.+|+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999853
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.55 E-value=0.17 Score=51.94 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.9
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
.+++.+++|+|||+.
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999984
No 135
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.44 E-value=0.54 Score=42.18 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
..+++.+++|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 6799999999999984
No 136
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.40 E-value=0.088 Score=50.83 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
.+.+++.+|+|+|||+.
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999984
No 137
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.38 E-value=0.12 Score=52.11 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+++.+|+|+|||+.
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 6799999999999984
No 138
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.23 E-value=0.083 Score=48.75 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=25.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccc
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPT 229 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Pt 229 (606)
++=.++.+++|||||+-.+ -.+.+..... -+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll-~~i~n~~~~~------------~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELM-RRVRRFQIAQ------------YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHH-HHHHHHHHTT------------CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHH-HHHHHHHHcC------------CeEEEEccc
Confidence 5668899999999997533 3333333221 138888886
No 139
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.14 E-value=0.11 Score=46.88 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
...+++.+++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999984
No 140
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.08 E-value=0.17 Score=47.99 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=26.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccch
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTR 230 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr 230 (606)
.++-.++++++|+|||++.+--+....... -+++|+.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g-------------~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQ-------------YKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTT-------------CCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCC-------------CeEEEEeecC
Confidence 356678899999999987554443332221 2388888864
No 141
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.98 E-value=0.1 Score=52.36 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=19.2
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhc
Q 007368 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
....+|||||+|.+........+..+++..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~ 133 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAY 133 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhC
Confidence 367899999999986222334455555543
No 142
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.066 Score=56.06 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=33.0
Q ss_pred CCCCccccCCCCHHHHHHHHhCC---CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHH
Q 007368 139 PPVNTFAEIDLGEELNLNIRRCK---YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 139 ~~~~~f~~~~l~~~l~~~l~~~~---~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a 195 (606)
.|..+|++++--+...+.|...= +..|--++...+ ..-+.+|+.+|+|||||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 46678999976666666654321 112222222211 1247899999999999984
No 143
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.079 Score=54.74 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCccccCCCCHHHHHHHHhCC---CCCCCHHHHhHHHHHhcCCCEEEEccCCCchhHH
Q 007368 140 PVNTFAEIDLGEELNLNIRRCK---YVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~---~~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a 195 (606)
|..+|++++=-+...+.|+..- +..|--++... +..-+.+|+.+|+|||||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 5568998864444444443221 11111122111 12248899999999999984
No 144
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.53 E-value=0.11 Score=51.84 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
..+.+++.+|+|+|||+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCSEEEEECSSSSSHHHH
T ss_pred CCceEEEECCCCcCHHHH
Confidence 357899999999999984
No 145
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.48 E-value=1.5 Score=38.77 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=52.9
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhccccccceeEE
Q 007368 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRYL 298 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~l 298 (606)
+||.|+++..+..+++.+... ++.+..++++.+..+.... +.. ...|||+| +.+.. .+++..+++|
T Consensus 38 ~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~~~~V 107 (163)
T 2hjv_A 38 CIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIENISLV 107 (163)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhcCCEE
Confidence 999999999999999988875 6788888998775544333 333 47899999 33333 4578888888
Q ss_pred EEecc
Q 007368 299 ALDEA 303 (606)
Q Consensus 299 VlDEa 303 (606)
|.-+.
T Consensus 108 i~~~~ 112 (163)
T 2hjv_A 108 INYDL 112 (163)
T ss_dssp EESSC
T ss_pred EEeCC
Confidence 87544
No 146
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.22 E-value=0.54 Score=49.21 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
..+++++++|+|||++.
T Consensus 101 ~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV 117 (443)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45788999999999953
No 147
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.17 E-value=3.1 Score=37.94 Aligned_cols=72 Identities=24% Similarity=0.313 Sum_probs=53.7
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---h-cCCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+++..+..+++.++.. ++.+..++|+.+..+....+ . ..+.|||+| +.+.. .+++.++++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v~~ 125 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAIQH 125 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccCCE
Confidence 4999999999999999988875 67888889988765543333 2 257899999 44444 357888888
Q ss_pred EEEecc
Q 007368 298 LALDEA 303 (606)
Q Consensus 298 lVlDEa 303 (606)
||.=+.
T Consensus 126 VI~~d~ 131 (191)
T 2p6n_A 126 VINYDM 131 (191)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887443
No 148
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.10 E-value=0.13 Score=52.45 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
.+.+|+.+|+|+|||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 367999999999999843
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.05 E-value=0.45 Score=47.99 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
.++++.+|+|+|||+.
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4599999999999984
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.70 E-value=0.16 Score=53.21 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCCCccccCCCCHHHHHHHHhCCC---CCCCHHHHhHHHHHhcCCCEEEEccCCCchhHH
Q 007368 139 PPVNTFAEIDLGEELNLNIRRCKY---VKPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 139 ~~~~~f~~~~l~~~l~~~l~~~~~---~~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a 195 (606)
.|..+|++++=-+.+.+.|+..-. ..|--++... +..-+.+|+.+|+|||||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 355689998655555555543211 1111111111 12348899999999999983
No 151
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.11 Score=54.44 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
-+.+|+.+|+|||||+.
T Consensus 215 prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 38899999999999984
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.34 E-value=0.73 Score=45.69 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
.+++.+|+|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999853
No 153
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.33 E-value=0.32 Score=48.91 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
..+++.+++|+|||+.
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999984
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.31 E-value=0.29 Score=49.50 Aligned_cols=42 Identities=10% Similarity=0.254 Sum_probs=25.5
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007368 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
....++|||||+|. ++......+.++++.. +....+|+.|..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~----~~~~~~Il~t~~ 173 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY----SKNIRLIMVCDS 173 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS----TTTEEEEEEESC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh----cCCCEEEEEeCC
Confidence 34677999999998 4444445566666654 344455555544
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.07 E-value=0.4 Score=45.52 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=31.0
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 177 VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
..+.-+++.+++|+|||+.++..+ ..+.... -.++++.- .+...++.+.+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~-~~~~~~~------------~~v~~~~~-e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFL-WNGLKMG------------EPGIYVAL-EEHPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH-HHHHHTT------------CCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH-HHHHhcC------------CeEEEEEc-cCCHHHHHHHHHHc
Confidence 346788999999999998543333 3333221 11666653 33456666666543
No 156
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.95 E-value=2 Score=38.42 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=53.3
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+++..+..+++.+... ++.+..++++.+..+....+ .. ...||||| +.+.. .+++..+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldi~~~~~ 102 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLFGR-GMDIERVNI 102 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-----SCCST-TCCGGGCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC-----Cchhc-CcchhhCCE
Confidence 3999999999999999988875 67888889888765543333 32 57899999 32222 356788888
Q ss_pred EEEeccc
Q 007368 298 LALDEAD 304 (606)
Q Consensus 298 lVlDEah 304 (606)
||.-+..
T Consensus 103 Vi~~d~p 109 (172)
T 1t5i_A 103 AFNYDMP 109 (172)
T ss_dssp EEESSCC
T ss_pred EEEECCC
Confidence 8875443
No 157
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.89 E-value=0.43 Score=49.20 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
.+.+|+.+++|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999843
No 158
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.87 E-value=0.22 Score=52.44 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
.+.+|+.+|+|+|||+.
T Consensus 167 ~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 47899999999999984
No 159
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.85 E-value=0.6 Score=43.71 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.+.-+++.+++|+|||+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 457789999999999984
No 160
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.82 E-value=0.18 Score=53.23 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
..+|+.+|+|+|||+.+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999843
No 161
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.81 E-value=0.54 Score=46.25 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
.+.+++.+|+|+|||+.
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999984
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.77 E-value=0.23 Score=50.73 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
.+.+++.+|+|+|||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999843
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.52 E-value=0.29 Score=52.63 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+.+++++|+|+|||+.+
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67999999999999853
No 164
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.49 E-value=1.2 Score=41.54 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
.+++.+++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999984
No 165
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.44 E-value=0.83 Score=40.58 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=52.4
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+++..+..+++.+... ++.+..++++.+..+.... +.. ...|||+| +.+.. .+++..+++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-G~d~~~~~~ 101 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLAR-GIDVQQVSL 101 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTT-TCCCCSCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhhc-CCCcccCCE
Confidence 3999999999999999888874 6788888988875544333 332 47899999 33333 356778888
Q ss_pred EEEecc
Q 007368 298 LALDEA 303 (606)
Q Consensus 298 lVlDEa 303 (606)
||.-+.
T Consensus 102 Vi~~~~ 107 (165)
T 1fuk_A 102 VINYDL 107 (165)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887443
No 166
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.38 E-value=0.74 Score=42.96 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=52.0
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeEE
Q 007368 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYL 298 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~l 298 (606)
+||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+ .. ..+||||| +.+.. .+++..+++|
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~v~~V 103 (212)
T 3eaq_A 34 AMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQVDLV 103 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCCBSEE
T ss_pred EEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCccCcEE
Confidence 999999999999999888875 67888999998766554433 33 47899999 44433 4578888888
Q ss_pred EE
Q 007368 299 AL 300 (606)
Q Consensus 299 Vl 300 (606)
|.
T Consensus 104 i~ 105 (212)
T 3eaq_A 104 VH 105 (212)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 167
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.32 E-value=0.92 Score=41.74 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=31.6
Q ss_pred cceeEEEEecccccccCCC--HHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHH
Q 007368 293 QMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLA 347 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf--~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~ 347 (606)
..+++|||||+=..+..++ .+++..++... +...-+|+.+--.|.++..++
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R----p~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR----PGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS----CTTCEEEEECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhC----cCCCEEEEECCCCcHHHHHhC
Confidence 6689999999976555443 23444454443 455556666666677665444
No 168
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.24 E-value=0.88 Score=42.96 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCCchhHHhHH
Q 007368 178 AGRDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~ll 198 (606)
.+.-+++.+++|+|||+.+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 457789999999999985443
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.22 E-value=0.67 Score=43.05 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 007368 178 AGRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~l 197 (606)
.+.-+++.+++|+|||+.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45678999999999998544
No 170
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=91.10 E-value=0.56 Score=42.22 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=52.5
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+++..+..+++.+... ++.+..++++.+..+.... +.. .+.|||+| +.+. ..+++..+++
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~~~~ 105 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVCA-RGIDVKQVTI 105 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSCC-TTTCCTTEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cchh-cCCCcccCCE
Confidence 5999999999999999888874 6788888998876554333 333 47899999 3333 3457888998
Q ss_pred EEEec
Q 007368 298 LALDE 302 (606)
Q Consensus 298 lVlDE 302 (606)
||.-+
T Consensus 106 Vi~~d 110 (175)
T 2rb4_A 106 VVNFD 110 (175)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88533
No 171
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=91.09 E-value=0.13 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHhcCcccHHHHHHHH
Q 007368 510 LSLARPLAELMQESNQEVPAWLTRYAS 536 (606)
Q Consensus 510 ~~~~~~l~~~l~~~~q~vp~~L~~~~~ 536 (606)
...+..+.+.+-+..+..|..|..+..
T Consensus 231 ~~~l~~i~~~il~~y~~~~~~L~~i~~ 257 (358)
T 2pk2_A 231 LELLDELTHEFLQILEKTPNRLKRIWN 257 (358)
T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccchhc
Confidence 444555554444555556666666654
No 172
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.08 E-value=0.19 Score=52.23 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
-+.+|+.+|+|||||+.
T Consensus 216 prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CSEEEEESSTTTTHHHH
T ss_pred CCCCceECCCCchHHHH
Confidence 37899999999999983
No 173
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.01 E-value=0.21 Score=47.64 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=21.8
Q ss_pred ccceeEEEEeccccccc-----CCCHHHHHHHHHhc
Q 007368 292 LQMIRYLALDEADRMLD-----MGFEPQIRKIVQQM 322 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~-----~gf~~~i~~i~~~l 322 (606)
..+.++||+||.-.+++ ......+..++..+
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l 168 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTIL 168 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHH
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 35678999999998876 34444566666665
No 174
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.81 E-value=0.67 Score=47.97 Aligned_cols=75 Identities=15% Similarity=0.074 Sum_probs=61.9
Q ss_pred CceEEEEEcchhhHHHHHHHHHh---CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-ccc---cCCCCCCccEE
Q 007368 401 QSLTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VAA---RGLDIPHVAHV 473 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~~---~GlDip~v~~V 473 (606)
..++||.++++.-+..+++.++. .++.+..+||+.+..++...++.+..+..+|+|+|. .+. .-++..++.+|
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~i 143 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFV 143 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEE
Confidence 56799999999999999999988 588999999999999999999999999999999994 221 11455577777
Q ss_pred EE
Q 007368 474 VN 475 (606)
Q Consensus 474 I~ 475 (606)
|.
T Consensus 144 Vi 145 (414)
T 3oiy_A 144 FV 145 (414)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 175
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.73 E-value=0.68 Score=45.59 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=17.1
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 007368 176 SVAGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~ 196 (606)
+..+.-+++.+++|+|||+.+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHH
Confidence 345678899999999999843
No 176
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.55 E-value=1.2 Score=42.91 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=16.3
Q ss_pred hcCCCEEEEccCCCchhHH
Q 007368 177 VAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a 195 (606)
.....+++.+++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3458899999999999984
No 177
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.44 E-value=0.83 Score=43.82 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
.+.+++.+|+|+|||+.
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35799999999999984
No 178
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.41 E-value=1.2 Score=46.77 Aligned_cols=113 Identities=14% Similarity=0.043 Sum_probs=54.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEE-ECC
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVA-YGG 257 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~-~gg 257 (606)
+.-+++.|++|+|||...+ -++..+.... +-.+++++.- .-..|+...+..... ++....+ .+.
T Consensus 200 G~l~ii~G~pg~GKT~lal-~ia~~~a~~~-----------g~~vl~~slE-~~~~~l~~R~~~~~~--~i~~~~l~~g~ 264 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFAL-TIAQNAALKE-----------GVGVGIYSLE-MPAAQLTLRMMCSEA--RIDMNRVRLGQ 264 (444)
T ss_dssp TCEEEEEECTTSCHHHHHH-HHHHHHHHTT-----------CCCEEEEESS-SCHHHHHHHHHHHHT--TCCTTTCCGGG
T ss_pred CcEEEEEeCCCCCHHHHHH-HHHHHHHHhC-----------CCeEEEEECC-CCHHHHHHHHHHHHc--CCCHHHHhCCC
Confidence 4668999999999998444 3433333211 0126666442 223444444322111 1110000 111
Q ss_pred CChHHHHHH-------HhcCCcEEEe-----cHHHHHHHHHhccccccceeEEEEecccccccC
Q 007368 258 APINQQLRE-------LERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLDM 309 (606)
Q Consensus 258 ~~~~~~~~~-------l~~~~~Ilv~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~ 309 (606)
.+ ..++.. +. ...|.|. |+..+...+.+-.. -..+++||+|..+.|...
T Consensus 265 l~-~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 265 LT-DRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp CC-HHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC
T ss_pred CC-HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCC
Confidence 11 222221 22 2345553 45555554443221 135889999999988643
No 179
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.34 E-value=1 Score=47.38 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=18.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
.+.-+++.|++|+|||+.++ -++..+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l-~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFAL-NIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHHHH
Confidence 35678999999999998544 333333
No 180
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.11 E-value=0.85 Score=46.94 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.7
Q ss_pred CCEEE--EccCCCchhHH
Q 007368 180 RDLMA--CAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li--~a~TGsGKT~a 195 (606)
..+++ .++.|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 46788 89999999984
No 181
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.02 E-value=0.43 Score=49.78 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
-+.+|+.+|+|||||+.
T Consensus 206 prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CCEEEEESCTTTTHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 37899999999999984
No 182
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.88 E-value=1.1 Score=53.21 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=64.3
Q ss_pred CceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc-cccccCCCCCCccEEEE
Q 007368 401 QSLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVAT-DVAARGLDIPHVAHVVN 475 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-~v~~~GlDip~v~~VI~ 475 (606)
..++||.|++..-+..+++.+.. .++.+..+++..+..++..+++.+..|..+|+|+| ..+...+.+.++.+||.
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 45899999999998888887764 35778899999999999999999999999999999 66677788888888773
No 183
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.84 E-value=0.49 Score=46.71 Aligned_cols=16 Identities=25% Similarity=0.166 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999984
No 184
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.64 E-value=1.1 Score=44.96 Aligned_cols=21 Identities=24% Similarity=0.036 Sum_probs=16.6
Q ss_pred CCCEEEEccCCCchhHHhHHH
Q 007368 179 GRDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llp 199 (606)
+.-+++.+++|+|||..++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~l 127 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQL 127 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHH
Confidence 467899999999999854433
No 185
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.60 E-value=1.4 Score=43.58 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
.+++.+|.|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 499999999999984
No 186
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.57 E-value=2.3 Score=42.92 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
.+++.++.|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999853
No 187
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.55 E-value=2.7 Score=38.89 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=53.3
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC-----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc-----ccCCCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPH 469 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~-----~~GlDip~ 469 (606)
..++||.|+++.-+..+++.++.. ++.+..++|+.+..++...+. .+..+|+|+|. .+ ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347999999999999888877654 688889999988766655443 45678999994 22 23466777
Q ss_pred ccEEEE
Q 007368 470 VAHVVN 475 (606)
Q Consensus 470 v~~VI~ 475 (606)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887774
No 188
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.35 E-value=3 Score=41.30 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.1
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
++-+++.+++|+|||+.
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 34578899999999984
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.19 E-value=1.2 Score=44.88 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=23.3
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q 007368 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLF 335 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~ 335 (606)
...+++|+||+|.|... ....+.++++.. +....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~----~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERY----TKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHT----TTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcC----CCCeEEEEE
Confidence 34789999999987543 234455555553 344444444
No 190
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.05 E-value=0.55 Score=50.04 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
.+.+|+.+|+|+|||+.+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 367999999999999843
No 191
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.99 E-value=12 Score=37.08 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=26.2
Q ss_pred cHHHHHHHHHhccccccceeEEEEeccccccc---CCCHHHHHHHHHhc
Q 007368 277 TPGRLVDLLERARVSLQMIRYLALDEADRMLD---MGFEPQIRKIVQQM 322 (606)
Q Consensus 277 Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~---~gf~~~i~~i~~~l 322 (606)
+...+++.+..... . --+|||||+|.+.+ ..+...+..++...
T Consensus 123 ~~~~l~~~l~~~~~--~-~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 123 SFANLLESFEQASK--D-NVIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp CHHHHHHHHHHTCS--S-CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred hHHHHHHHHHhcCC--C-CeEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 34455555543211 2 34899999999864 35666777666553
No 192
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.92 E-value=1.4 Score=43.64 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHhH
Q 007368 181 DLMACAQTGSGKTAAFC 197 (606)
Q Consensus 181 d~li~a~TGsGKT~a~l 197 (606)
..|+.+|.|+|||.++.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999998543
No 193
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.61 E-value=1.3 Score=47.03 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=54.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECC
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGG 257 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg 257 (606)
.+....+.+-|||+||++. +. +.+.. .+ .+|||+|+..+|.|++++++.|... .|..+-..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~--a~---l~~~~--~~---------p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~ 73 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV--AE---IAERH--AG---------PVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADW 73 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH--HH---HHHHS--SS---------CEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCC
T ss_pred CCCeEEEeCCCchHHHHHH--HH---HHHHh--CC---------CEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCc
Confidence 3456788999999999842 22 22211 00 1899999999999999999998543 23322111
Q ss_pred -------CC-----hHHHHHHHh----cCCcEEEecHHHHHHHH
Q 007368 258 -------AP-----INQQLRELE----RGVDILVATPGRLVDLL 285 (606)
Q Consensus 258 -------~~-----~~~~~~~l~----~~~~Ilv~Tp~~L~~~l 285 (606)
.. ....+..+. ....|||+|...|+..+
T Consensus 74 e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp CSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred ccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcC
Confidence 11 112222222 34569999988887543
No 194
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.60 E-value=2.1 Score=42.68 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.++.++|.++.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 357899999999999983
No 195
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.57 E-value=0.96 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=18.6
Q ss_pred HhcCCCEEEEccCCCchhHHhHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~ll 198 (606)
+..+.-+++.+++|+|||+.++.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 45678899999999999985443
No 196
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.55 E-value=4.7 Score=40.32 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=34.9
Q ss_pred ceeEEEEecccccc-cCCCHHHHHHHHHhcCCCCCCCceEEEEeccChHHHHHHHHHhh
Q 007368 294 MIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFL 351 (606)
Q Consensus 294 ~~~~lVlDEah~~~-~~gf~~~i~~i~~~l~~~~~~~~q~ll~SAT~~~~i~~l~~~~l 351 (606)
..+++++|.+-++- +.....++..+...+ ..+..++.+.+|...++...++.|.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral----~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVT----KPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHH----CCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHh----cCCCCEEEEecHHHHHHHHHHHHHH
Confidence 45678899887643 233455666666555 3445678888887777666666654
No 197
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=88.54 E-value=4.7 Score=36.41 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=44.0
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHH---HHHHh-cCCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQ---LRELE-RGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+++..+..+++.++.. ++.+..++|+.+..+. +..+. ..+.|||+| +.+.. .+++..+++
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldi~~~~~ 117 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNVKH 117 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSBSE
T ss_pred eEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhhc-CCCcccCCE
Confidence 4999999999999999888774 6788888887754433 33333 357899999 33333 346778888
Q ss_pred EEEec
Q 007368 298 LALDE 302 (606)
Q Consensus 298 lVlDE 302 (606)
||.=+
T Consensus 118 VI~~d 122 (185)
T 2jgn_A 118 VINFD 122 (185)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88633
No 198
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.07 E-value=1.2 Score=43.97 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=52.9
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeEE
Q 007368 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYL 298 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~l 298 (606)
+||.|+|++-+..+++.+... ++.+..++|+.+..++...+ .. ..+||||| +.+.+ .+++..+++|
T Consensus 31 ~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v~~V 100 (300)
T 3i32_A 31 AMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQVDLV 100 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-CccccceeEE
Confidence 999999999999888888764 78889999998766554433 22 47899999 44443 4578889888
Q ss_pred EEecc
Q 007368 299 ALDEA 303 (606)
Q Consensus 299 VlDEa 303 (606)
|.=+.
T Consensus 101 I~~d~ 105 (300)
T 3i32_A 101 VHYRM 105 (300)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 85333
No 199
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.33 E-value=1.6 Score=43.46 Aligned_cols=116 Identities=7% Similarity=-0.040 Sum_probs=55.8
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEE---
Q 007368 177 VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVV--- 253 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~--- 253 (606)
..+.-+++.|++|+|||+.++. ++..+.... -.+++++-- +-..|+...+........+.-..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~-ia~~~a~~g------------~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~l~~~~ 131 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALK-QAKNMSDND------------DVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAAR 131 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH-HHHHHHTTT------------CEEEEEESS-SCHHHHHHHHHHHHTTCCHHHHHSCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH-HHHHHHHcC------------CeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCC
Confidence 3456789999999999985443 333333221 126666532 34455555544332111110000
Q ss_pred --EECCCC--hHHHHHHHhcCCcEEEe-----cHHHHHHHHHhcccccccee--EEEEeccccccc
Q 007368 254 --AYGGAP--INQQLRELERGVDILVA-----TPGRLVDLLERARVSLQMIR--YLALDEADRMLD 308 (606)
Q Consensus 254 --~~gg~~--~~~~~~~l~~~~~Ilv~-----Tp~~L~~~l~~~~~~l~~~~--~lVlDEah~~~~ 308 (606)
+..+.. .......+. ...|.|. |+..|...+.+... -..++ +||+|-.+.|..
T Consensus 132 ~~l~~~~~~~l~~a~~~l~-~~~i~i~d~~~~~~~~i~~~i~~l~~-~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 132 RDFASEDWGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HHHCSSCHHHHHHHHHHHH-TSCEEEECCSCCBHHHHHHHHHHHHH-TSSSCCEEEEEECGGGSBC
T ss_pred CCCCHHHHHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCeEEEEeCchhcCC
Confidence 011110 001111222 2355543 45566555543221 23577 999999998753
No 200
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.30 E-value=0.8 Score=48.53 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+++.+|+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999984
No 201
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.89 E-value=1.1 Score=45.05 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=55.0
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEEC
Q 007368 177 VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYG 256 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~g 256 (606)
..+.-+++.|++|+|||+.++. ++..+.... -.++|++. -.-..|+...+........+.-. ..+
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~-ia~~~a~~g------------~~Vl~fSl-Ems~~ql~~Rlls~~~~v~~~~l-~~g 108 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMN-MVLSALNDD------------RGVAVFSL-EMSAEQLALRALSDLTSINMHDL-ESG 108 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHH-HHHHHHHTT------------CEEEEEES-SSCHHHHHHHHHHHHHCCCHHHH-HHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHH-HHHHHHHcC------------CeEEEEeC-CCCHHHHHHHHHHHhhCCCHHHH-hcC
Confidence 3456789999999999985443 333333321 12666654 23345555444322111111000 011
Q ss_pred CCChHHHHHHHh------cCCcEEEe-----cHHHHHHHHHhccccccceeEEEEeccccccc
Q 007368 257 GAPINQQLRELE------RGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLD 308 (606)
Q Consensus 257 g~~~~~~~~~l~------~~~~Ilv~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~ 308 (606)
..+ ..++..+. ....|.|. |+..|...+.+-......+++||+|-.+.|..
T Consensus 109 ~Ls-~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 109 RLD-DDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp CCC-HHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred CCC-HHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 111 22222111 12345553 34455444443221112689999999997753
No 202
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.84 E-value=0.62 Score=46.35 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
...+++.+++|+|||+.
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 37899999999999984
No 203
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.79 E-value=3.1 Score=40.30 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+++.+|+|+|||+.
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 4599999999999983
No 204
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.75 E-value=0.76 Score=49.70 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.+..+++.+|+|+|||+.
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367899999999999984
No 205
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=86.38 E-value=1.5 Score=51.73 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=62.2
Q ss_pred CceEEEEEcchhhHHHHHHHHHh---CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc----ccCCCCCCccE
Q 007368 401 QSLTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA----ARGLDIPHVAH 472 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~----~~GlDip~v~~ 472 (606)
..++||.++++.-|..+++.|+. .++.+..+||+++..+|...++.+..+..+|||+|. .+ .. ++..++.+
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~ 199 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDF 199 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSE
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCE
Confidence 56799999999999999999988 567899999999998999999999999999999994 22 22 45567788
Q ss_pred EEE
Q 007368 473 VVN 475 (606)
Q Consensus 473 VI~ 475 (606)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 206
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.18 E-value=4.6 Score=39.65 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=14.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.++-+.++++.|+|||+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTT 114 (295)
T ss_dssp SSEEEEEECCTTTTHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345677889999999984
No 207
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.05 E-value=2.9 Score=42.83 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=53.0
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---h-cCCcEEEecHHHHHHHHHhcccccccee
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
.++||.|++++.+..+++.+++. ++.+..++++.+..+....+ . ...+||||| +.+.. .+++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip~v~ 346 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNVK 346 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCCCEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCcccCC
Confidence 45999999999999999988874 67888889988765543333 2 257899999 44444 45788899
Q ss_pred EEEE
Q 007368 297 YLAL 300 (606)
Q Consensus 297 ~lVl 300 (606)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 208
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.95 E-value=1.2 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=17.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHH
Q 007368 179 GRDLMACAQTGSGKTAAFCFPII 201 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil 201 (606)
+.-+++.+++|+|||..++..+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36689999999999985444333
No 209
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=85.17 E-value=7.1 Score=39.68 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=53.7
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+++.-+..+++.+.+. ++.+..++++.+..++...+ .. ..+||||| +.+. ..+++.++++
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~~~ 337 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCA-RGIDVEQVSV 337 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-SSCCCTTEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Cccc-cCCCccCCCE
Confidence 5999999999999999998875 67788889988765544333 33 47899999 3333 3457889999
Q ss_pred EEEecc
Q 007368 298 LALDEA 303 (606)
Q Consensus 298 lVlDEa 303 (606)
||.-..
T Consensus 338 Vi~~~~ 343 (412)
T 3fht_A 338 VINFDL 343 (412)
T ss_dssp EEESSC
T ss_pred EEEECC
Confidence 885443
No 210
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.12 E-value=4.2 Score=39.98 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
++.+++.+++|+|||+..
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467888999999999843
No 211
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.60 E-value=1.6 Score=46.96 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=54.7
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007368 401 QSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
...+||.++++.-+....+.|...++.+..+|+..+..++..++..+..+..+|||+|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46799999999999999999999999999999999999999999999999999999994
No 212
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.49 E-value=4.3 Score=43.69 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=55.8
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---h-cCCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
.+||.|+|+.-+..+++.+++... .++.+..++++.+..+....+ . ...+||||| +.+.. .+++.++++
T Consensus 341 ~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~~-GiDip~v~~ 413 (563)
T 3i5x_A 341 KAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNVHE 413 (563)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTCCE
T ss_pred cEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhhc-CCCcccCCE
Confidence 599999999999999999987643 267888889888765544333 2 357899999 44443 457888998
Q ss_pred EEEeccc
Q 007368 298 LALDEAD 304 (606)
Q Consensus 298 lVlDEah 304 (606)
||.-..-
T Consensus 414 VI~~~~p 420 (563)
T 3i5x_A 414 VLQIGVP 420 (563)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 8865543
No 213
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.48 E-value=6.2 Score=37.45 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=52.5
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-c----cc--cCCCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-V----AA--RGLDIPH 469 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v----~~--~GlDip~ 469 (606)
..++||.++++.-+..+++.++.. ++.+..++|+....++...+. ...+|+|+|. . +. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 456999999999988888777554 788899999988766554443 3578999993 2 22 4567778
Q ss_pred ccEEEE
Q 007368 470 VAHVVN 475 (606)
Q Consensus 470 v~~VI~ 475 (606)
+.+||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887774
No 214
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.25 E-value=1.1 Score=50.63 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCccccCCCCHHHHHHHHhCCCC---CCCHHHHhHHHHHhcCCCEEEEccCCCchhHH
Q 007368 140 PVNTFAEIDLGEELNLNIRRCKYV---KPTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~---~p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a 195 (606)
|..+|.+++.-+...+.|+..-.. .|.-+++.- +...+.+|+.+|.|||||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 445788887777777776644211 111111100 11236899999999999973
No 215
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=84.25 E-value=1 Score=48.52 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=19.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
..+++|.+.||||||.+ +..++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999995 444444444
No 216
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.16 E-value=0.84 Score=46.60 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
.++-+++.+++|+|||.. ++.++..+.
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHHH
Confidence 346789999999999984 444444443
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.12 E-value=4.5 Score=46.20 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
.++++++++|+|||+.
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 5799999999999984
No 218
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=83.90 E-value=8.8 Score=42.37 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=57.4
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhcccccccee
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
.++||.|+|+..+..+++.+... ++++..++++.+..+.... +.. .++|+|+| +.+.+ .+++.+++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l~~-GlDip~v~ 515 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLLRE-GLDIPEVS 515 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCCST-TCCCTTEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chhhC-CcccCCCC
Confidence 35999999999999998888875 6788888887765544333 333 47999999 34333 45788999
Q ss_pred EEEEeccccc
Q 007368 297 YLALDEADRM 306 (606)
Q Consensus 297 ~lVlDEah~~ 306 (606)
+||+-|++..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999999864
No 219
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.82 E-value=4.1 Score=38.09 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=51.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC-----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc-----ccCCCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPH 469 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~-----~~GlDip~ 469 (606)
..++||.++++.-+..+++.++.. ++.+..++|+....++...++ ..+|+|+|. .+ ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCCccccc
Confidence 567999999999999998888653 677889999988776655442 478999994 22 23455666
Q ss_pred ccEEEE
Q 007368 470 VAHVVN 475 (606)
Q Consensus 470 v~~VI~ 475 (606)
+.+||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 666663
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.60 E-value=6 Score=41.83 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=30.5
Q ss_pred cceeEEEEeccccccc-CCCHHHHHHHHHhcCC--CCCCCceEEEEeccChHHHHHHHHHhh
Q 007368 293 QMIRYLALDEADRMLD-MGFEPQIRKIVQQMDM--PPPGVRQTMLFSATFPKEIQKLASDFL 351 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~-~gf~~~i~~i~~~l~~--~~~~~~q~ll~SAT~~~~i~~l~~~~l 351 (606)
..+++||+|=+=++-. .....++.+++..++. +..+..-++.++||...+....++.|.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 3466888887755321 1122344444333221 111233467888887666555566554
No 221
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.56 E-value=1.8 Score=47.27 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=53.9
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhc--cCCCCcEEEEcc
Q 007368 401 QSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSF--KSGKTPILVATD 459 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F--~~g~~~iLVaT~ 459 (606)
...+||.++++.-+....+.|...++.+..++++++..++..++..+ ..+..+|||+|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46799999999999999999999999999999999999999998888 578899999996
No 222
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.51 E-value=3.6 Score=38.84 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=52.9
Q ss_pred CceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-----ccc-cCCCCCCc
Q 007368 401 QSLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VAA-RGLDIPHV 470 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-----v~~-~GlDip~v 470 (606)
..++||.++++.-+..+++.++. .++.+..++|+.+..++...+.. ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 55699999999988888776654 48899999999888777666553 478999994 222 34577788
Q ss_pred cEEEE
Q 007368 471 AHVVN 475 (606)
Q Consensus 471 ~~VI~ 475 (606)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87774
No 223
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.47 E-value=1.6 Score=47.76 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.2
Q ss_pred HHhcCCCEEEEccCCCchhHH
Q 007368 175 ISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 175 ~i~~~~d~li~a~TGsGKT~a 195 (606)
.+..+..+++.+|+|+|||+.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 456778999999999999984
No 224
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.25 E-value=1.5 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCchhHHhHHH
Q 007368 178 AGRDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llp 199 (606)
.++-+++.++.|+|||+.++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~l 81 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHA 81 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4577899999999999854433
No 225
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=83.25 E-value=12 Score=37.61 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=55.8
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhcccccccee
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
..+||.|+++.-+..+++.++.. ++.+..++++.+..++... +.. ..+|||+| +.+. ..+++.+++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~~ 313 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVLA-RGIDIPTVS 313 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGGS-SSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-cCCCcccCC
Confidence 35999999999999999988875 6778888888876544333 333 47899999 3333 346788999
Q ss_pred EEEEecccc
Q 007368 297 YLALDEADR 305 (606)
Q Consensus 297 ~lVlDEah~ 305 (606)
+||.-+...
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 999866654
No 226
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=83.15 E-value=16 Score=29.29 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=41.4
Q ss_pred EEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCC
Q 007368 404 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG 450 (606)
Q Consensus 404 ~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g 450 (606)
.+||.+..+....+...++..|..++.++++.....|.+-++.|...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 57888888888889999999999999999999999999999999754
No 227
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=82.95 E-value=11 Score=37.34 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=52.8
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
.+||.|++++-+..+++.+++. ++.+..++++.+..+.... +.. ..+|||+| +.+.. .+++.++++
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~-Gid~~~~~~ 309 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMSR-GIDVNDLNC 309 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHHH-HCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCCcccCCE
Confidence 4899999999999999988875 6788888888775544333 222 47899999 33333 357888888
Q ss_pred EEEecc
Q 007368 298 LALDEA 303 (606)
Q Consensus 298 lVlDEa 303 (606)
||.-+.
T Consensus 310 Vi~~~~ 315 (367)
T 1hv8_A 310 VINYHL 315 (367)
T ss_dssp EEESSC
T ss_pred EEEecC
Confidence 886544
No 228
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.93 E-value=3.4 Score=38.32 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.+.-+.+.+|+|||||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 457789999999999984
No 229
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.83 E-value=0.99 Score=39.06 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=17.4
Q ss_pred HHhcCCCEEEEccCCCchhHH
Q 007368 175 ISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 175 ~i~~~~d~li~a~TGsGKT~a 195 (606)
.......+++.+++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345568999999999999974
No 230
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=82.82 E-value=3.3 Score=40.60 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
.+++.+|+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999984
No 231
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.65 E-value=2.6 Score=39.28 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=47.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC---CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc-----ccCCCCCCcc
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPHVA 471 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~-----~~GlDip~v~ 471 (606)
..++||.++++.-+..+++.+... ++.+..++++.+..++...+. ...+|+|+|. .+ ...+++.++.
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDIS----KGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHH----SCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 566999999999999999888764 678888898876555444332 2478999994 11 2355677777
Q ss_pred EEEE
Q 007368 472 HVVN 475 (606)
Q Consensus 472 ~VI~ 475 (606)
+||.
T Consensus 170 ~lVi 173 (228)
T 3iuy_A 170 YLVI 173 (228)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 232
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.46 E-value=7.2 Score=39.36 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=53.7
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC-----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc-----ccCCCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPH 469 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~-----~~GlDip~ 469 (606)
..++||.|+++.-+..+++.+... ++.+..++|+.+..+....+. .+..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 457999999999999988877654 788999999988776655543 45678999993 22 23456777
Q ss_pred ccEEEE
Q 007368 470 VAHVVN 475 (606)
Q Consensus 470 v~~VI~ 475 (606)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 787773
No 233
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=82.40 E-value=2.2 Score=44.71 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=17.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHH
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPII 201 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil 201 (606)
.+.-+++.|++|+|||+.++..+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHH
Confidence 346689999999999985444433
No 234
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=82.17 E-value=6.7 Score=42.47 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=56.1
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---h-cCCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
.+||.|+|+..+..+++.+++... .++.+..++++.+..+....+ . ...+||||| +.+.. .+++.++++
T Consensus 290 ~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~-GiDip~v~~ 362 (579)
T 3sqw_A 290 KAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNVHE 362 (579)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTCCE
T ss_pred cEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhc-CCCcccCCE
Confidence 599999999999999999987643 267888889888765543333 2 357899999 44443 457888999
Q ss_pred EEEeccc
Q 007368 298 LALDEAD 304 (606)
Q Consensus 298 lVlDEah 304 (606)
||.-..-
T Consensus 363 VI~~~~p 369 (579)
T 3sqw_A 363 VLQIGVP 369 (579)
T ss_dssp EEEESCC
T ss_pred EEEcCCC
Confidence 8876654
No 235
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.54 E-value=4.7 Score=36.69 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=51.3
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhC--CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-----cc-ccCCCCCCcc
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VA-ARGLDIPHVA 471 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-----v~-~~GlDip~v~ 471 (606)
...++||.|+++..+..+++.++.. .+.+..++++....+....+.. ..+|+|+|. .+ ...+++.++.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999999988765 4678888988765554444432 477999994 12 2345677777
Q ss_pred EEEE
Q 007368 472 HVVN 475 (606)
Q Consensus 472 ~VI~ 475 (606)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 236
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.07 E-value=1.2 Score=38.59 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=17.4
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 007368 176 SVAGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~ 196 (606)
......+++.+++|+|||+.+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345689999999999999843
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.68 E-value=2.6 Score=47.55 Aligned_cols=16 Identities=31% Similarity=0.574 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+|+.+|.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999983
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.55 E-value=1.2 Score=45.11 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=18.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
+.-++|.+++|+|||+. ++.++..+
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~ 85 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEA 85 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHH
Confidence 46789999999999984 44444433
No 239
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.20 E-value=1 Score=40.71 Aligned_cols=121 Identities=11% Similarity=0.100 Sum_probs=69.5
Q ss_pred CHHHHhHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 166 TPVQRHAIPISVAG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 166 ~~~Q~~ai~~i~~~--~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+-|..++..++.. +-.++.+.-|++||...+.-++ .+.++. +-.+.||+|+..-.....+.+..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~-~~a~~~-----------Gr~V~vLAp~~~s~~~l~~~~~l- 102 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV-MMAREQ-----------GREVQIIAADRRSQMNMKQDERL- 102 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHH-HHHHHT-----------TCCEEEECSTTHHHHHHSCTTTC-
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHH-HHHHhc-----------CeEEEEEcCchHHHHHHHhhcCc-
Confidence 45688888888664 4677889999999997544433 233222 22499999998766553332221
Q ss_pred hhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEEEecccccccCCCHHHHHHHHHhcC
Q 007368 244 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 323 (606)
Q Consensus 244 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~ 323 (606)
.. +++ |- ..+......|..=++||+|||-.|.- .++..++..-.
T Consensus 103 ------~~--------------------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~ 146 (189)
T 2l8b_A 103 ------SG--------------------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAA 146 (189)
T ss_dssp ------SS--------------------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHH
T ss_pred ------Cc--------------------cee--eh----hhhhcCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHH
Confidence 00 011 10 11222333345566899999998764 34444444332
Q ss_pred CCCCCCceEEEEecc
Q 007368 324 MPPPGVRQTMLFSAT 338 (606)
Q Consensus 324 ~~~~~~~q~ll~SAT 338 (606)
..+.|+|++--+
T Consensus 147 ---~~naqvvll~~~ 158 (189)
T 2l8b_A 147 ---RHNVQVLITDSG 158 (189)
T ss_dssp ---HTTCCEEEEESS
T ss_pred ---hcCCEEEEeCCc
Confidence 234577776443
No 240
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=79.91 E-value=3.7 Score=41.35 Aligned_cols=26 Identities=15% Similarity=-0.075 Sum_probs=18.8
Q ss_pred HHHHhc-----CCCEEEEccCCCchhHHhHH
Q 007368 173 IPISVA-----GRDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 173 i~~i~~-----~~d~li~a~TGsGKT~a~ll 198 (606)
+..++. +.-+++.+++|+|||..++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~ 141 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHT 141 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 555553 35689999999999985443
No 241
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=79.76 E-value=13 Score=40.94 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=56.4
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+|+..+..+++.+... ++++..++++.+..+.... +.. .++||||| +.+.. .+++..+++
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~~-GlDip~v~l 510 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLRE-GLDIPEVSL 510 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCCT-TCCCTTEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhhc-CccCCCCCE
Confidence 5999999999999999888875 6788888887765544333 333 47899999 44433 357889999
Q ss_pred EEEeccccc
Q 007368 298 LALDEADRM 306 (606)
Q Consensus 298 lVlDEah~~ 306 (606)
||+=+++..
T Consensus 511 VI~~d~d~~ 519 (664)
T 1c4o_A 511 VAILDADKE 519 (664)
T ss_dssp EEETTTTSC
T ss_pred EEEeCCccc
Confidence 999888753
No 242
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=79.71 E-value=21 Score=35.95 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=52.5
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---Hhc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|++++-+..+++.++.. ++.+..++++.+..+.... +.. ...|||+| +.+. ..+++..+++
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-----~~~~-~Gidip~~~~ 329 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-----DLLT-RGIDIQAVNV 329 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-----SCSS-SSCCCTTEEE
T ss_pred cEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-----Cccc-cCCCccCCCE
Confidence 5999999999999999988875 6778888888876544333 333 47899999 3333 3457888998
Q ss_pred EEEec
Q 007368 298 LALDE 302 (606)
Q Consensus 298 lVlDE 302 (606)
||.-+
T Consensus 330 Vi~~~ 334 (400)
T 1s2m_A 330 VINFD 334 (400)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88644
No 243
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.69 E-value=11 Score=34.16 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=49.6
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC-----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-c----ccc-CCCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-V----AAR-GLDIPH 469 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v----~~~-GlDip~ 469 (606)
..++||.++++.-+..+++.+... ++.+..++++....+....+ .....|+|+|. . +.+ -+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999998888877553 57788899988765543332 24678999995 2 222 345667
Q ss_pred ccEEEE
Q 007368 470 VAHVVN 475 (606)
Q Consensus 470 v~~VI~ 475 (606)
+.+||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 244
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=79.37 E-value=1.3 Score=44.10 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=16.9
Q ss_pred hcCCCEEEEccCCCchhHHhHH
Q 007368 177 VAGRDLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~ll 198 (606)
..++.+++.+++|+|||..++.
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHH
Confidence 3456679999999999985443
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.29 E-value=3.1 Score=44.24 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+.+++.+|+|+|||+.
T Consensus 65 ~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHL 80 (499)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999984
No 246
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.95 E-value=22 Score=36.02 Aligned_cols=71 Identities=13% Similarity=0.232 Sum_probs=52.6
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---h-cCCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+++..+..+++.+... ++.+..++++.+..+....+ . ....|||+| +.+. ..+++.++++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidi~~v~~ 347 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVWA-RGLDVPQVSL 347 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGGS-SSCCCTTEEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-CcCCcccCCE
Confidence 4999999999999998888874 67788888888755443333 2 257899999 3333 3457889999
Q ss_pred EEEec
Q 007368 298 LALDE 302 (606)
Q Consensus 298 lVlDE 302 (606)
||.-.
T Consensus 348 Vi~~~ 352 (410)
T 2j0s_A 348 IINYD 352 (410)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88644
No 247
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.88 E-value=11 Score=35.34 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=44.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-----cccc-CCCCCCc
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VAAR-GLDIPHV 470 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-----v~~~-GlDip~v 470 (606)
..++||.++++..+..+++.++.. ++.+..++++....+ .++.+..+...|+|+|. .+.+ .+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 567999999999999888888654 566777787654332 33445566789999993 3333 3566677
Q ss_pred cEEEE
Q 007368 471 AHVVN 475 (606)
Q Consensus 471 ~~VI~ 475 (606)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77764
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.68 E-value=7.5 Score=43.68 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
..++++++++|+|||+.+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 478999999999999853
No 249
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=78.38 E-value=1.6 Score=45.63 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=32.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHH
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSS 234 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~ 234 (606)
...++++.++||||||.. +..++..++... ..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~g------------~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLRG------------DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHTT------------CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHCC------------CcEEEEeCCCchhH
Confidence 458999999999999996 444555554432 24888899888864
No 250
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.32 E-value=1.9 Score=41.70 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=20.2
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
+..+.-+++++|||||||+. +-++..++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl--l~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT--IASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH--HHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHH--HHHHHHhC
Confidence 45677889999999999983 33444444
No 251
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=77.95 E-value=5.1 Score=41.65 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=51.6
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeEE
Q 007368 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYL 298 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~l 298 (606)
+||.|+++.-|..+++.+.+. ++.+..++|+.+..+....+ .. .+.||||| +.+.+ .+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v~~r-GlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SVASR-GLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GGGTS-SCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hhhhC-CCCcccCCEE
Confidence 999999999999999888874 67888889988765544333 33 47899999 33333 4578888888
Q ss_pred EE
Q 007368 299 AL 300 (606)
Q Consensus 299 Vl 300 (606)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.67 E-value=4.7 Score=49.93 Aligned_cols=48 Identities=17% Similarity=0.070 Sum_probs=31.3
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 237 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~ 237 (606)
+..++.+++++++|||||+.++..+.+.+... -.++++. .-++..++.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~G-------------e~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-------------KTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTT-------------CCEEEEC-TTSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEE-ccccHHHHH
Confidence 34568999999999999996555554443221 1266664 455666666
No 253
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.15 E-value=0.46 Score=42.57 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=48.0
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|+++..+..+++.++.. ++.+..++++.+..+....+ .. .+.|||+| +.+.. .+++..+++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gid~~~~~~ 101 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAAR-GIDIPDVSH 101 (170)
Confidence 4999999999999988888774 67788888876544333222 22 46899999 33332 245667777
Q ss_pred EEEec
Q 007368 298 LALDE 302 (606)
Q Consensus 298 lVlDE 302 (606)
||.-+
T Consensus 102 Vi~~~ 106 (170)
T 2yjt_D 102 VFNFD 106 (170)
Confidence 76533
No 254
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=77.58 E-value=5.7 Score=40.60 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=25.4
Q ss_pred CHHHHhHHHHH---hcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 166 TPVQRHAIPIS---VAGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 166 ~~~Q~~ai~~i---~~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
-..=..+|..+ -.|+.+.+.+++|+|||.. +-.+.+..
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL--l~~Iar~i 198 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTML--LQNIAQSI 198 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH--HHHHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHH--HHHHHHHH
Confidence 33444566654 4579999999999999984 33344444
No 255
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.54 E-value=7.2 Score=43.83 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
.+++.+|||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999853
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.53 E-value=2.1 Score=43.42 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=17.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPI 200 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpi 200 (606)
.++-+++.++.|+|||+.++..+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45778999999999999544433
No 257
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=77.45 E-value=2.7 Score=39.01 Aligned_cols=38 Identities=21% Similarity=0.076 Sum_probs=29.3
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
-+.-|+.++..+..+.-+.+.+|.|||||+ ++-++..+
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKST--Ll~~l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTY--LAMAKAVQ 45 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTH--HHHHHHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 344577788888889999999999999998 44444444
No 258
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.83 E-value=4.7 Score=37.72 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=48.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc----cc--CCCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA----AR--GLDIPH 469 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~----~~--GlDip~ 469 (606)
..++||.++++.-+..+++.++.. ++.+..++|+.+..+....+ ...+|+|+|. .+ .+ .++..+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 557999999999999888888664 47788899987655544433 3578999994 22 12 356667
Q ss_pred ccEEEE
Q 007368 470 VAHVVN 475 (606)
Q Consensus 470 v~~VI~ 475 (606)
+.+||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 776663
No 259
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.82 E-value=6 Score=46.34 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=56.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CC----CcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-ccccCCC-CCCc
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN----GF----PATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLD-IPHV 470 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~----~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~~~GlD-ip~v 470 (606)
..++||.++++.-+..+++.++.. ++ .+..+||+.+..++.+.++.+.. .+|||+|. .+..-+. +..+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 567999999999998888877643 56 78899999999988888888877 89999994 3332222 5577
Q ss_pred cEEEE
Q 007368 471 AHVVN 475 (606)
Q Consensus 471 ~~VI~ 475 (606)
.+||.
T Consensus 177 ~~lVi 181 (1054)
T 1gku_B 177 DFIFV 181 (1054)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77773
No 260
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.58 E-value=6.8 Score=40.58 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=61.9
Q ss_pred ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-CC---CcEEeeCccCHHHHHHHHHhccCCCC
Q 007368 377 HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-GF---PATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 377 ~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
....|....+.++...... ...++||.|+++.-+...++.+... +. .+..+||+....++..... ..
T Consensus 32 tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~ 102 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RA 102 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HC
T ss_pred CCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CC
Confidence 3445655555554444321 2667999999999999888888765 55 7889999998887766554 35
Q ss_pred cEEEEc-ccccc-----CCCCCCccEEEE
Q 007368 453 PILVAT-DVAAR-----GLDIPHVAHVVN 475 (606)
Q Consensus 453 ~iLVaT-~v~~~-----GlDip~v~~VI~ 475 (606)
+|+|+| +.+.. -+...++++||.
T Consensus 103 ~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 103 KVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp SEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred CEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 799999 33322 456777777774
No 261
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=76.51 E-value=2.4 Score=48.05 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.++.+++++|+|||||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 357899999999999984
No 262
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=75.58 E-value=2.4 Score=39.97 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=31.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+.-+++.+++|+|||..++-.+.+.+.+... .+++++- -+-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~------------~v~~~s~-E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE------------PGVFVTL-EERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC------------CEEEEES-SSCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC------------Cceeecc-cCCHHHHHHHHHHc
Confidence 35678999999999998544444443333221 1555543 34455666665543
No 263
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.17 E-value=3.6 Score=41.68 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.4
Q ss_pred hcCCCEEEEccCCCchhHH
Q 007368 177 VAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a 195 (606)
..+..+++++|||||||+.
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3445789999999999983
No 264
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=73.92 E-value=2 Score=53.04 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=21.7
Q ss_pred HHHHhc------CCCEEEEccCCCchhHHhHHHHH
Q 007368 173 IPISVA------GRDLMACAQTGSGKTAAFCFPII 201 (606)
Q Consensus 173 i~~i~~------~~d~li~a~TGsGKT~a~llpil 201 (606)
+..++. ++.+++++|+|+|||..++..+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 555555 68999999999999986544433
No 265
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=73.58 E-value=17 Score=37.79 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHhH
Q 007368 180 RDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~l 197 (606)
+.+++++++|+|||+.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999998543
No 266
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.25 E-value=10 Score=34.86 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=43.8
Q ss_pred CceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc-----ccCCCCCCc
Q 007368 401 QSLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPHV 470 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~-----~~GlDip~v 470 (606)
..++||.++++.-+..+++.+.. .++.+..++|+....++... +. ..+|+|+|. .+ ...+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 56799999999999888887765 36788889998765544333 22 278999994 21 235566677
Q ss_pred cEEEE
Q 007368 471 AHVVN 475 (606)
Q Consensus 471 ~~VI~ 475 (606)
.+||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77663
No 267
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.06 E-value=7.7 Score=39.06 Aligned_cols=19 Identities=26% Similarity=0.120 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHhH
Q 007368 179 GRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~l 197 (606)
++-+.+.++.|||||+...
T Consensus 131 G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567899999999998433
No 268
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=72.99 E-value=4.2 Score=43.26 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=17.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHH
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPII 201 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil 201 (606)
.+.-+++.+++|+|||+..+..+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHH
Confidence 356789999999999985444333
No 269
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=72.71 E-value=5.3 Score=41.14 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHhH
Q 007368 179 GRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~l 197 (606)
+.-++|.++.|||||+...
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4678999999999998544
No 270
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=72.71 E-value=3.2 Score=43.44 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=45.0
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEEE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLAL 300 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVl 300 (606)
++||.||+++-+..+++.+++. ++++..+++. .....+..+.. ..+||||| +.+..+ +++. +++||.
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~e~G-iDip-v~~VI~ 246 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIAEMG-ANLC-VERVLD 246 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEES-----SSTTCC-TTCC-CSEEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chhhee-eccC-ceEEEe
Confidence 5999999999999999998875 6788888873 33444455544 47999999 444433 4677 887763
No 271
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=72.70 E-value=30 Score=36.63 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
.+++++.+|+|||+.+
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999853
No 272
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=71.56 E-value=16 Score=37.82 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.2
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
++.++++++.|+|||+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345778899999999853
No 273
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=71.51 E-value=2.5 Score=42.89 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556778865 677889999999874
No 274
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=71.40 E-value=6.9 Score=38.88 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=47.5
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCCh
Q 007368 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPI 260 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~ 260 (606)
-+++.++.|+|||+..+.. +....+.. .+-.++++..--.+. |. .++++....
T Consensus 30 iteI~G~pGsGKTtL~Lq~-~~~~~~~g----------~g~~vlyId~E~s~~-~~--ra~~lGvd~------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTM-VSSYMRQY----------PDAVCLFYDSEFGIT-PA--YLRSMGVDP------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHH-HHHHHHHC----------TTCEEEEEESSCCCC-HH--HHHHTTCCG-------------
T ss_pred eEEEECCCCCCHHHHHHHH-HHHHHhcC----------CCceEEEEeccchhh-HH--HHHHhCCCH-------------
Confidence 4788999999999854444 33333320 012377776644443 22 345542111
Q ss_pred HHHHHHHhcCCcEEEecH---HHH-HHHHHhc-cccccceeEEEEecccccc
Q 007368 261 NQQLRELERGVDILVATP---GRL-VDLLERA-RVSLQMIRYLALDEADRML 307 (606)
Q Consensus 261 ~~~~~~l~~~~~Ilv~Tp---~~L-~~~l~~~-~~~l~~~~~lVlDEah~~~ 307 (606)
-+++++.| +.+ +.+++.- .+.-..+++||+|-+..|.
T Consensus 83 ----------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ----------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ----------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ----------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 02334332 333 3322211 1223468999999999875
No 275
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.77 E-value=15 Score=35.07 Aligned_cols=71 Identities=20% Similarity=0.107 Sum_probs=50.6
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-----ccc--cCCCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VAA--RGLDIPH 469 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-----v~~--~GlDip~ 469 (606)
..++||.++++.-+..+++.|+.. +..+..++|+....+....+. .+ .+|+|+|. .+. ..+++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG---NG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---HC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---CC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 556999999999999988887653 566778888877665544443 23 78999993 222 2467778
Q ss_pred ccEEEE
Q 007368 470 VAHVVN 475 (606)
Q Consensus 470 v~~VI~ 475 (606)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887764
No 276
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.08 E-value=2.2 Score=45.53 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=22.4
Q ss_pred CCHHHHhHHHH-HhcCCCEEEEccCCCchhHH
Q 007368 165 PTPVQRHAIPI-SVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 165 p~~~Q~~ai~~-i~~~~d~li~a~TGsGKT~a 195 (606)
+++.+..-+.. +..+..++++++||||||+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444444443 45678899999999999983
No 277
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=68.99 E-value=26 Score=32.88 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=49.4
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc-----ccCCCCCCc
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPHV 470 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~-----~~GlDip~v 470 (606)
..++||.|+++.-+..+++.++.. ++.+..++++....+....+ ....+|+|+|. .+ ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 357999999999998888777543 56778888887655544333 23578999994 22 123567777
Q ss_pred cEEEE
Q 007368 471 AHVVN 475 (606)
Q Consensus 471 ~~VI~ 475 (606)
.+||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77764
No 278
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=68.83 E-value=2.6 Score=42.87 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=20.9
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 175 ISVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 175 ~i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
.+..+..++++++||||||+ ++-++..+
T Consensus 171 ~i~~G~~i~ivG~sGsGKST--ll~~l~~~ 198 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT--LMKALMQE 198 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH--HHHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHH--HHHHHHhc
Confidence 35668899999999999999 34444333
No 279
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=68.42 E-value=11 Score=34.59 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=47.2
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC--------CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-----cccc-CCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN--------GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VAAR-GLD 466 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-----v~~~-GlD 466 (606)
..++||.++++.-+..+++.++.. ++.+..++|+.+..+.. +.+ ....+|+|+|. .+.+ .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 457999999999998888876543 57778888886543321 222 23578999994 2222 355
Q ss_pred CCCccEEEE
Q 007368 467 IPHVAHVVN 475 (606)
Q Consensus 467 ip~v~~VI~ 475 (606)
+..+.+||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 666777663
No 280
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=68.14 E-value=3.3 Score=41.37 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455677866 677899999999874
No 281
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=67.96 E-value=13 Score=39.04 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.3
Q ss_pred HhcCCCEEEEccCCCchhHH
Q 007368 176 SVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a 195 (606)
+.+++.+++.++.|+|||..
T Consensus 148 i~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp EETTCEEEEECCSSSCHHHH
T ss_pred hccCCEEEEECCCCCCccHH
Confidence 45688899999999999984
No 282
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.95 E-value=20 Score=37.20 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHhH
Q 007368 180 RDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~l 197 (606)
+.+++++++|+|||++..
T Consensus 101 ~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467788999999998544
No 283
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=67.47 E-value=4.9 Score=41.65 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=18.2
Q ss_pred HHhHHHHHh--cCCCEEEEccCCCchhHH
Q 007368 169 QRHAIPISV--AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 169 Q~~ai~~i~--~~~d~li~a~TGsGKT~a 195 (606)
+..++..++ .+.-+++++|||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 344444333 334578999999999993
No 284
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=67.29 E-value=3.1 Score=49.94 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=27.5
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhcCCCCCCCceEEEEec
Q 007368 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSA 337 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l~~~~~~~~q~ll~SA 337 (606)
+++-++|||||+=--+|..-+..+.+.+..+ ...+-+|+.+.
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~----~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRA----REGRTCIVIAH 1274 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTT----SSSSEEEEECS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHH----cCCCEEEEecc
Confidence 4566789999998888876666666666554 33444454443
No 285
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=66.69 E-value=3.6 Score=41.82 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4455677865 577889999999864
No 286
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=66.64 E-value=4.4 Score=38.17 Aligned_cols=72 Identities=25% Similarity=0.269 Sum_probs=48.2
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-c----ccc---CCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-V----AAR---GLDIP 468 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v----~~~---GlDip 468 (606)
..++||.++++.-+..+++.++.. ++.+..++++..... ..........+|+|+|. . +.+ .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 457999999999999998888664 666777776532221 12233456778999993 2 222 46777
Q ss_pred CccEEEE
Q 007368 469 HVAHVVN 475 (606)
Q Consensus 469 ~v~~VI~ 475 (606)
++.+||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8887764
No 287
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=66.62 E-value=3.7 Score=41.36 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=19.9
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5666778866 577889999999875
No 288
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=66.52 E-value=3.6 Score=41.63 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556678866 577889999999874
No 289
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=66.50 E-value=3.9 Score=37.38 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=14.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.++-+.+++|+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999993
No 290
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=66.47 E-value=3.6 Score=41.83 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=18.8
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445677765 577889999999874
No 291
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=66.35 E-value=3.5 Score=41.46 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=18.8
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445677765 577889999999874
No 292
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=66.31 E-value=59 Score=31.59 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCchhHHhH
Q 007368 179 GRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~l 197 (606)
++-+++.+++|+|||+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457778999999998533
No 293
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=66.30 E-value=3.7 Score=41.40 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=18.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445677765 577889999999874
No 294
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=66.21 E-value=3.8 Score=41.02 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=20.5
Q ss_pred hHHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 171 HAIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 171 ~ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
..|..++.|.+ +++.++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 45667788866 577889999999875
No 295
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=66.14 E-value=6.2 Score=43.67 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=47.3
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEE
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 299 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lV 299 (606)
.++||.||+++-++.+++.+++. ++++..+++. .....+..+.. ..+||||| +.+..+ +++. +++||
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e~G-IDip-v~~VI 478 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISEMG-ANFG-ASRVI 478 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGGTT-CCCC-CSEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhhcc-eeeC-CcEEE
Confidence 45999999999999999888875 6788888873 33333344443 47899999 444443 4566 76665
No 296
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=66.02 E-value=3.8 Score=41.36 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455677765 677889999999875
No 297
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=65.99 E-value=3.8 Score=42.24 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHhH
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAFC 197 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~l 197 (606)
.|..++.|.+ +++.++||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3445677755 6778899999998753
No 298
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=65.87 E-value=3.8 Score=36.74 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.++-+++++|+|||||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999993
No 299
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=65.63 E-value=3.5 Score=41.77 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455677865 577889999999864
No 300
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=65.62 E-value=3.9 Score=41.38 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=18.4
Q ss_pred HHHHhcCCC--EEEEccCCCchhHHh
Q 007368 173 IPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 173 i~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
|..++.|.+ +++.++||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445677765 677889999999864
No 301
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=65.60 E-value=3.8 Score=41.37 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=20.1
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667788866 577889999999875
No 302
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=65.59 E-value=8.4 Score=40.94 Aligned_cols=94 Identities=10% Similarity=0.138 Sum_probs=57.4
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCc
Q 007368 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTP 453 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 453 (606)
...|....+-.+.............++||.|+++.-+..+.+.+... ++.+..+||+.+..++...+.. ..+
T Consensus 29 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ 104 (555)
T 3tbk_A 29 GCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DND 104 (555)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCS
T ss_pred CChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCC
Confidence 34555443334433333322223667999999998888777766554 8999999999865544333321 367
Q ss_pred EEEEcc-ccc----cC-C-CCCCccEEEE
Q 007368 454 ILVATD-VAA----RG-L-DIPHVAHVVN 475 (606)
Q Consensus 454 iLVaT~-v~~----~G-l-Dip~v~~VI~ 475 (606)
|+|+|. .+. .+ + ++.++.+||.
T Consensus 105 i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 105 IIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp EEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred EEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 999993 222 22 3 4556777763
No 303
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=65.55 E-value=3.9 Score=41.37 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4456678866 577889999999875
No 304
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=65.26 E-value=4 Score=41.32 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=18.8
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445677765 577889999999874
No 305
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=65.25 E-value=19 Score=40.45 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=54.2
Q ss_pred EEEEEccchHHHHHHHHHHHHhh-------hcCCcEEEEEECCCChHHHHHHHhc---------CCcEEEecHHHHHHHH
Q 007368 222 LALILAPTRELSSQIHDEAKKFS-------YQTGVKVVVAYGGAPINQQLRELER---------GVDILVATPGRLVDLL 285 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~-------~~~~~~~~~~~gg~~~~~~~~~l~~---------~~~Ilv~Tp~~L~~~l 285 (606)
.+||.+|++.-+..+++.+.+.. ...++.+..++++.+..++...+.. ...||||| +.+
T Consensus 305 ~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ia 379 (773)
T 2xau_A 305 DILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----NIA 379 (773)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----THH
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----cHH
Confidence 59999999999999999887632 2247889999999887766554432 35799999 444
Q ss_pred HhccccccceeEEEE
Q 007368 286 ERARVSLQMIRYLAL 300 (606)
Q Consensus 286 ~~~~~~l~~~~~lVl 300 (606)
+.+ +++..+.+||-
T Consensus 380 e~G-idIp~v~~VId 393 (773)
T 2xau_A 380 ETS-LTIDGIVYVVD 393 (773)
T ss_dssp HHT-CCCTTEEEEEE
T ss_pred HhC-cCcCCeEEEEe
Confidence 443 57888887774
No 306
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=65.20 E-value=2.3 Score=39.28 Aligned_cols=43 Identities=12% Similarity=0.011 Sum_probs=26.7
Q ss_pred eeEEEEecccccccCC--CHHHHHHHHHhcCCCCCCCceEEEEecc
Q 007368 295 IRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGVRQTMLFSAT 338 (606)
Q Consensus 295 ~~~lVlDEah~~~~~g--f~~~i~~i~~~l~~~~~~~~q~ll~SAT 338 (606)
-.+|||||||.++... ..+. ..++..+........++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCC-CHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchh-HHHHHHHHhcCcCCeEEEEECCC
Confidence 4589999999985321 1111 23555555444556688888776
No 307
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=65.11 E-value=11 Score=40.22 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=55.8
Q ss_pred cchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCc
Q 007368 378 ESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTP 453 (606)
Q Consensus 378 ~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 453 (606)
...|....+-.+.............++||.|+++.-+..+.+.+... ++.+..+||+.+..++...+.. ...
T Consensus 32 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ 107 (556)
T 4a2p_A 32 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSD 107 (556)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCS
T ss_pred CChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCC
Confidence 34455443333333333322223667999999999888888777654 8999999999866554333321 367
Q ss_pred EEEEcc-ccc----cC-C-CCCCccEEEE
Q 007368 454 ILVATD-VAA----RG-L-DIPHVAHVVN 475 (606)
Q Consensus 454 iLVaT~-v~~----~G-l-Dip~v~~VI~ 475 (606)
|+|+|. .+. .+ + ++..+++||.
T Consensus 108 i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 108 IIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp EEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred EEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 999993 222 22 3 5677787774
No 308
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=65.08 E-value=35 Score=34.10 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=51.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc-----ccCCCCCCc
Q 007368 401 QSLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPHV 470 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~-----~~GlDip~v 470 (606)
..++||.|+++.-+..+++.+.. .++.+..++|+....+....+. ..+|+|+|. .+ ...+++..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 56799999999999888887754 3678889999988777666554 367999993 21 224556677
Q ss_pred cEEEE
Q 007368 471 AHVVN 475 (606)
Q Consensus 471 ~~VI~ 475 (606)
.+||.
T Consensus 164 ~~vIi 168 (394)
T 1fuu_A 164 KMFIL 168 (394)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77763
No 309
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=65.05 E-value=4.1 Score=41.39 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=18.8
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445677765 677899999999874
No 310
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=64.93 E-value=3.7 Score=41.84 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=18.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445667765 677889999999864
No 311
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.67 E-value=4.5 Score=41.69 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=20.1
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667788866 577889999999975
No 312
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=64.58 E-value=23 Score=37.24 Aligned_cols=74 Identities=19% Similarity=0.119 Sum_probs=49.3
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHH---HHh-cCCcEEEecHHHHHHHHHhccccccceeEE
Q 007368 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLR---ELE-RGVDILVATPGRLVDLLERARVSLQMIRYL 298 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~l 298 (606)
.+|++.+.+-+..+++.+... +.++..++|+.+..+... .+. ...+|||||+..+-. .+++.++++|
T Consensus 350 ~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~v 420 (510)
T 2oca_A 350 AFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHHV 420 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEEE
T ss_pred eEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcEE
Confidence 445555566666666666653 347888888877554332 232 347899999766544 4578899999
Q ss_pred EEecccc
Q 007368 299 ALDEADR 305 (606)
Q Consensus 299 VlDEah~ 305 (606)
|+.....
T Consensus 421 i~~~~~~ 427 (510)
T 2oca_A 421 VLAHGVK 427 (510)
T ss_dssp EESSCCC
T ss_pred EEeCCCC
Confidence 9988773
No 313
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=64.38 E-value=4.5 Score=40.75 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=18.9
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445677765 577889999999874
No 314
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=64.08 E-value=16 Score=41.17 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=56.7
Q ss_pred ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCC
Q 007368 377 HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 377 ~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
....|....+-.+.............++||.|+++.-+..+.+.++.. ++.+..+||+.+...+...+. ...
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~ 347 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDS 347 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTC
T ss_pred CCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCC
Confidence 345565544444444443322223677999999999888887777654 899999999987665433332 246
Q ss_pred cEEEEcc-ccc----c-CC-CCCCccEEEE
Q 007368 453 PILVATD-VAA----R-GL-DIPHVAHVVN 475 (606)
Q Consensus 453 ~iLVaT~-v~~----~-Gl-Dip~v~~VI~ 475 (606)
+|+|+|. .+. . -+ .+.++.+||.
T Consensus 348 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 348 DIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp SEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 7999993 222 2 23 4556777773
No 315
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=63.97 E-value=2.9 Score=41.86 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=20.3
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
+..+..++++++||||||+ ++-++..+
T Consensus 168 i~~g~~v~i~G~~GsGKTT--ll~~l~g~ 194 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT--YIKSIMEF 194 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH--HHHHGGGG
T ss_pred ccCCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 4568899999999999999 34444333
No 316
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=63.72 E-value=4.3 Score=42.34 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445677865 677889999999875
No 317
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=63.24 E-value=4.4 Score=41.42 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHhHH
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAFCF 198 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ll 198 (606)
.|..++.|.+ +++.++||||||.+..-
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 3445677755 67788999999987543
No 318
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=63.24 E-value=5.1 Score=40.89 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=44.9
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhccccccceeE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 297 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~ 297 (606)
++||.|++++.+..+++.+.+. ++.+..++++.+..++...+ .. ...|||+| +.+. ..+++.++++
T Consensus 282 ~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~v~~ 351 (414)
T 3eiq_A 282 QAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT-----DLLA-RGIDVQQVSL 351 (414)
T ss_dssp SCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEEC-----SSCC---CCGGGCSC
T ss_pred cEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEEC-----Cccc-cCCCccCCCE
Confidence 4899999999999988888764 67788888887655443333 22 46899999 3332 2356778888
Q ss_pred EEEec
Q 007368 298 LALDE 302 (606)
Q Consensus 298 lVlDE 302 (606)
||.-.
T Consensus 352 Vi~~~ 356 (414)
T 3eiq_A 352 VINYD 356 (414)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 87543
No 319
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.69 E-value=33 Score=36.42 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=62.6
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEE
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAY 255 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~ 255 (606)
+..+.-+++.+++|+|||+.... ++ .+.... +-.++++++.. -..|+...+..+ ++
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~-l~-g~~~~~-----------G~~vi~~~~ee-~~~~l~~~~~~~----g~------ 333 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSR-FV-ENACAN-----------KERAILFAYEE-SRAQLLRNAYSW----GM------ 333 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHH-HH-HHHHTT-----------TCCEEEEESSS-CHHHHHHHHHTT----SC------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH-HH-HHHHhC-----------CCCEEEEEEeC-CHHHHHHHHHHc----CC------
Confidence 34567889999999999984332 22 222111 11256665532 234555554432 11
Q ss_pred CCCChHHHHHHHhcCCcEEE-------ecHHHHHHHHHhccccccceeEEEEecccccccCC-----CHHHHHHHHHhcC
Q 007368 256 GGAPINQQLRELERGVDILV-------ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-----FEPQIRKIVQQMD 323 (606)
Q Consensus 256 gg~~~~~~~~~l~~~~~Ilv-------~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~~~~~g-----f~~~i~~i~~~l~ 323 (606)
...+ .. ..+ .+-+ .+.+.....+.... ...+.++||+| -=.-++.. ....+..++..+.
T Consensus 334 ---~~~~-~~--~~g-~~~~~~~~p~~LS~g~~q~~~~a~~-l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 334 ---DFEE-ME--RQN-LLKIVCAYPESAGLEDHLQIIKSEI-NDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp ---CHHH-HH--HTT-SEEECCCCGGGSCHHHHHHHHHHHH-HTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred ---CHHH-HH--hCC-CEEEEEeccccCCHHHHHHHHHHHH-HhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH
Confidence 1111 11 111 1111 13444444333322 24567899999 65666666 5666666666652
Q ss_pred CCCCCCceEEEEecc
Q 007368 324 MPPPGVRQTMLFSAT 338 (606)
Q Consensus 324 ~~~~~~~q~ll~SAT 338 (606)
....-+|+.|..
T Consensus 405 ---~~g~tvilvsh~ 416 (525)
T 1tf7_A 405 ---QEEITGLFTNTS 416 (525)
T ss_dssp ---HTTCEEEEEEEC
T ss_pred ---hCCCEEEEEECc
Confidence 122334555544
No 320
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=62.37 E-value=4.6 Score=41.14 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4566778865 577889999999864
No 321
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=62.33 E-value=4 Score=41.46 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=19.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..++.|.+ +++.++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778865 577889999999874
No 322
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=62.27 E-value=8.9 Score=39.81 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=39.3
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhc-CCcEEEec
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVAT 277 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~T 277 (606)
++||+||+++-+..+++.+++. ++++..+++.. ....+..+.. ..+|||||
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC
T ss_pred CEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC
Confidence 5999999999999999998875 67888888763 3334444443 57999999
No 323
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=62.26 E-value=3.8 Score=41.81 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=19.8
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
+..+..++++++||||||+. +-++..++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl--l~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT--IASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH--HHHHHhhc
Confidence 34567789999999999993 33444444
No 324
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=62.20 E-value=11 Score=40.83 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=25.4
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhc
Q 007368 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
+.+-+++|+||.-.-+|...+..+.+.+..+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4566799999999999887777787777776
No 325
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=61.91 E-value=3.8 Score=41.91 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=17.7
Q ss_pred HHHhcCCC--EEEEccCCCchhHHh
Q 007368 174 PISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 174 ~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
..++.|.+ +++.++||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567765 577889999999874
No 326
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=61.19 E-value=5.2 Score=41.32 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=20.5
Q ss_pred hHHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 171 HAIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 171 ~ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
..|..++.|.+ +++.++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 36677788866 577889999999874
No 327
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=60.94 E-value=4.9 Score=40.67 Aligned_cols=19 Identities=47% Similarity=0.527 Sum_probs=15.6
Q ss_pred cCCC--EEEEccCCCchhHHh
Q 007368 178 AGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 178 ~~~d--~li~a~TGsGKT~a~ 196 (606)
.+.+ +++.++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3665 688999999999864
No 328
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=60.83 E-value=14 Score=36.60 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=21.0
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCCcEE
Q 007368 401 QSLTLVFVETKKGADALEHWLYMNGFPATT 430 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~ 430 (606)
..+++.||- ...=+.+.+.|+..++.+..
T Consensus 226 ~~~v~a~aG-IgnP~~F~~~L~~~g~~i~~ 254 (315)
T 4ehx_A 226 EREVIAFSG-LGDNGQFRKVLKNLGIKVKE 254 (315)
T ss_dssp TCCEEEEES-STHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhhhh-cCCcHHHHHHHHHcCCceee
Confidence 455777764 55667788999998887753
No 329
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=60.78 E-value=5.7 Score=36.15 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.++.+++++++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467899999999999994
No 330
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=60.62 E-value=5.5 Score=37.02 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.7
Q ss_pred HhcCCCEEEEccCCCchhH
Q 007368 176 SVAGRDLMACAQTGSGKTA 194 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~ 194 (606)
+..++-+.+++|+|||||+
T Consensus 20 i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp --CCCCEEEECSTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3467889999999999998
No 331
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=60.07 E-value=15 Score=40.47 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=54.6
Q ss_pred EEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChH---HHHHHHhc---CCcEEEecHHHHHHHHHhcccccccee
Q 007368 223 ALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPIN---QQLRELER---GVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 223 ~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~---~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
.+|+++++.-+.++++.+.+. ++.+..++|+.+.. .+...+.. ..+||||| +.+.. .+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di~e~-GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DAIGM-GLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GGGGS-SCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cHHHC-CcCc-Ccc
Confidence 467789998888888888874 67889999998866 45555554 37999999 44444 4577 899
Q ss_pred EEEEeccccc
Q 007368 297 YLALDEADRM 306 (606)
Q Consensus 297 ~lVlDEah~~ 306 (606)
+||.-...+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999888654
No 332
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=60.01 E-value=5.6 Score=36.14 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=13.8
Q ss_pred CCEEEEccCCCchhH
Q 007368 180 RDLMACAQTGSGKTA 194 (606)
Q Consensus 180 ~d~li~a~TGsGKT~ 194 (606)
|-+++++|.|+|||+
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 568999999999998
No 333
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=59.73 E-value=5.6 Score=36.11 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.+.-+.+.+|+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788999999999983
No 334
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=59.66 E-value=8.4 Score=42.39 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=49.0
Q ss_pred CcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHHHHHHhccccccceeEEE
Q 007368 220 YPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 299 (606)
Q Consensus 220 ~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lV 299 (606)
...+||.++|++-++++++.+++. ++++..++++.+..+. ...+.+||||| +.+.++- ++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerGI-DId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTGY-TGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHHC-CCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHccC-CCC-CcEEE
Confidence 346999999999999999988874 6889999998875431 12456999999 5555543 454 77766
No 335
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=59.54 E-value=2.3 Score=41.33 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHH-hHHHHH--hcCCCEEEEccCCCchhHH
Q 007368 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQR-HAIPIS--VAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~-~ai~~i--~~~~d~li~a~TGsGKT~a 195 (606)
|..+|+++.--+.+.+.|+..- ..|+.. +++..+ .-.+.+++.+|.|||||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 3456888876566666554321 112211 222211 1125599999999999983
No 336
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=59.35 E-value=4.2 Score=38.63 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=28.3
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhHHHHHh--cCCCEEEEccCCCchhHH
Q 007368 140 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISV--AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 140 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~ai~~i~--~~~d~li~a~TGsGKT~a 195 (606)
|..+|+++.-.+.....++..... .. ...++..+- -.+.+++.+|+|+|||+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 445677776555555554432110 00 012222211 124599999999999983
No 337
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=59.22 E-value=14 Score=37.26 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q 007368 178 AGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~ 196 (606)
....+++.+|+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3478999999999999843
No 338
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.03 E-value=11 Score=46.04 Aligned_cols=120 Identities=17% Similarity=0.298 Sum_probs=64.3
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCC
Q 007368 180 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAP 259 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~ 259 (606)
+-+.+.+|.|||||+.++ ++++...+.. -.++++.+--.|.... ++++ ++.+
T Consensus 1432 ~~iei~g~~~sGkttl~~-~~~a~~~~~g------------~~~~~i~~e~~~~~~~---~~~~----Gv~~-------- 1483 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTL-QVIAAAQREG------------KTCAFIDAEHALDPIY---ARKL----GVDI-------- 1483 (1706)
T ss_dssp SEEEEECSTTSSHHHHHH-HHHHHHHHTT------------CCEEEECTTSCCCHHH---HHHT----TCCG--------
T ss_pred CEEEEEcCCCCCHHHHHH-HHHHHHHhcC------------CeEEEEecCCCCCHHH---HHHc----CCCH--------
Confidence 668999999999999644 4444333322 2378887765554443 5554 2221
Q ss_pred hHHHHHHHhcCCcEEEecHHH---HHHHHHhccccccceeEEEEecccccccCC-----------------CHHHHHHHH
Q 007368 260 INQQLRELERGVDILVATPGR---LVDLLERARVSLQMIRYLALDEADRMLDMG-----------------FEPQIRKIV 319 (606)
Q Consensus 260 ~~~~~~~l~~~~~Ilv~Tp~~---L~~~l~~~~~~l~~~~~lVlDEah~~~~~g-----------------f~~~i~~i~ 319 (606)
-+++|+-|+. .+..++.. +.-..+++||+|.+--+.... +...++++.
T Consensus 1484 -----------~~l~~~~p~~~e~~l~~~~~~-~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~ 1551 (1706)
T 3cmw_A 1484 -----------DNLLCSQPDTGEQALEICDAL-ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 1551 (1706)
T ss_dssp -----------GGCEEECCSSHHHHHHHHHHH-HHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHH
T ss_pred -----------HHeEEeCCCcHHHHHHHHHHH-HHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHH
Confidence 1255555533 22222221 122457899999988665321 223355555
Q ss_pred HhcCCCCCCCceEEEEeccChHHH
Q 007368 320 QQMDMPPPGVRQTMLFSATFPKEI 343 (606)
Q Consensus 320 ~~l~~~~~~~~q~ll~SAT~~~~i 343 (606)
..+ ....-+++|...+...+
T Consensus 1552 ~~~----~~~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1552 GNL----KQSNTLLIFINQIRMKI 1571 (1706)
T ss_dssp HHH----HHHTCEEEEEECBC---
T ss_pred HHH----HhCCcEEEEeecccccc
Confidence 544 22234677777766554
No 339
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=58.34 E-value=5.9 Score=36.37 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=19.6
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 175 ISVAGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 175 ~i~~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
.+..++-+.+.+|+|||||+ ++-++..++
T Consensus 16 ~i~~Gei~~l~GpnGsGKST--Ll~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST--VVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH--HHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHH--HHHHHHhhC
Confidence 46678889999999999998 333444443
No 340
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.28 E-value=17 Score=35.17 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
...+++.+|+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999843
No 341
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=58.01 E-value=4.5 Score=35.83 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
++-+++++++|||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999943
No 342
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=57.39 E-value=5.4 Score=39.98 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+-++|++|||||||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999853
No 343
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=57.30 E-value=5.5 Score=35.44 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.7
Q ss_pred hcCCCEEEEccCCCchhHHh
Q 007368 177 VAGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~ 196 (606)
...+.+++++++|||||+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999943
No 344
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=57.22 E-value=11 Score=38.48 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=28.2
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHH
Q 007368 177 VAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTREL 232 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~L 232 (606)
..+.+++++++||+|||+..- .++..+... +..++|+=|..+.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~-~~~~~~~~~------------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAK-MLLLREYMQ------------GSRVIIIDPEREY 75 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHH-HHHHHHHTT------------TCCEEEEESSCCS
T ss_pred cccCceEEEcCCCCCHHHHHH-HHHHHHHHC------------CCEEEEEeCCcCH
Confidence 356789999999999998533 333333221 1237888887664
No 345
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=57.16 E-value=6.7 Score=35.27 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=13.7
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+-+.+.+|+|||||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999983
No 346
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=57.13 E-value=13 Score=40.53 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=46.6
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 299 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lV 299 (606)
.+||.|+|+.-+..+++.+++. ++++..+++. .....+..+.. ..+||||| +.+.++ +++. +++||
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaT-----dv~~rG-iDi~-v~~VI 423 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTT-----DISEMG-ANFR-AGRVI 423 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEEC-----GGGGTT-CCCC-CSEEE
T ss_pred CEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEEC-----cHHHcC-cccC-ceEEE
Confidence 5999999999999999998875 6778887764 33334444443 57899999 444444 3554 66664
No 347
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=57.12 E-value=10 Score=40.25 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=22.0
Q ss_pred HHHhHHHHHhcCCCEEEEccCCCchhHH
Q 007368 168 VQRHAIPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 168 ~Q~~ai~~i~~~~d~li~a~TGsGKT~a 195 (606)
.-+.++..+..+.++++.+|+|+|||..
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3344555667789999999999999983
No 348
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=57.05 E-value=7.6 Score=34.11 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
+..++++++.|||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46789999999999984
No 349
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.96 E-value=5.2 Score=36.85 Aligned_cols=18 Identities=22% Similarity=0.483 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.++-+++.++||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 356789999999999974
No 350
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=56.42 E-value=6.3 Score=36.22 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.++-+++++|+|+|||+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456788999999999984
No 351
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=56.00 E-value=5.2 Score=39.73 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=18.4
Q ss_pred HHHhcCCCEEEEccCCCchhHH
Q 007368 174 PISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 174 ~~i~~~~d~li~a~TGsGKT~a 195 (606)
..+..+..+++.+|+|+|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3455678999999999999984
No 352
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=55.98 E-value=4.9 Score=35.13 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
-+++++++|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999994
No 353
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.86 E-value=6.6 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCchhHHhHHH
Q 007368 179 GRDLMACAQTGSGKTAAFCFP 199 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llp 199 (606)
+..+++.+++|+|||+.++..
T Consensus 732 G~lVlI~G~PG~GKTtLal~l 752 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQV 752 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHH
Confidence 478999999999999854433
No 354
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=55.54 E-value=5.5 Score=39.47 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+-++|++|||||||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 45788999999999853
No 355
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=55.40 E-value=9 Score=31.05 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=32.9
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCH
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 437 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~ 437 (606)
+..+++|||.+-..+...+..|...|+.+..|.|++..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 46679999999888899999999999988899998653
No 356
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=54.94 E-value=4 Score=36.72 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=16.0
Q ss_pred hcCCCEEEEccCCCchhHH
Q 007368 177 VAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a 195 (606)
..+.-+++++++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 4567789999999999993
No 357
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=54.77 E-value=7.7 Score=38.16 Aligned_cols=18 Identities=17% Similarity=0.422 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
....+++.+++|+|||+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457899999999999984
No 358
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=54.73 E-value=9.3 Score=39.90 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=45.8
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhc-CCcEEEecHHHHHHHHHhccccccceeEEE
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 299 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lV 299 (606)
.+||.||++.-+.++++.+++. ++++..+++... ...+..+.. ..+||||| +.+..+ +++.. ++||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT-----~v~~~G-iDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DISEMG-ANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEEC-----GGGGSS-CCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEEC-----CHHHhC-cCCCC-CEEE
Confidence 4999999999999999888774 677777776543 333333333 47999999 454443 45666 6665
No 359
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=54.72 E-value=67 Score=25.72 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=38.0
Q ss_pred CceEEEEEc------chhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE
Q 007368 401 QSLTLVFVE------TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 456 (606)
Q Consensus 401 ~~~~LVF~~------s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 456 (606)
..+++||.. ....|..+.++|...+++...+.=......++.+.+.......+.++
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if 78 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 78 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 556999987 48899999999999998877765444455555554433333344443
No 360
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=54.67 E-value=9.4 Score=34.66 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=20.0
Q ss_pred ccceeEEEEeccccc--ccCCCHHHHHHHHH
Q 007368 292 LQMIRYLALDEADRM--LDMGFEPQIRKIVQ 320 (606)
Q Consensus 292 l~~~~~lVlDEah~~--~~~gf~~~i~~i~~ 320 (606)
+.+.++||+||+..| .+..|...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 466789999998877 44445555555554
No 361
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=54.45 E-value=28 Score=28.79 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=31.2
Q ss_pred ceEEEEE-cchhhHHHHHHHHHhCCCCcEEeeCccCHH
Q 007368 402 SLTLVFV-ETKKGADALEHWLYMNGFPATTIHGDRTQQ 438 (606)
Q Consensus 402 ~~~LVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 438 (606)
.+++||| .+-..+..++..|+..|+.+..|.|++..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 6799999 476778889999999999999999987643
No 362
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=54.30 E-value=7.4 Score=35.71 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=18.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
.+.-+.|.+++|||||+ ++-+|..++.
T Consensus 21 ~g~~v~I~G~sGsGKST--l~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST--LSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHH--HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHHHHHHh
Confidence 34567889999999998 3444444443
No 363
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=54.04 E-value=6.6 Score=38.80 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
-++|++|||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999843
No 364
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=54.04 E-value=14 Score=44.45 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=24.9
Q ss_pred ccceeEEEEecccccccCCCHHHHHHHHHhc
Q 007368 292 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 292 l~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
+++-+++||||+=--+|..-+..+.+.+..+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 5677899999999989888777777777665
No 365
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=54.04 E-value=6.9 Score=34.90 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
.+.+++++++|||||+..
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999853
No 366
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=54.03 E-value=6.6 Score=37.46 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
-++++++||||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 368899999999984
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.00 E-value=12 Score=36.82 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=19.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
+.-+.+.+++|||||+ ++.++..++.
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHH
Confidence 4678889999999998 4455555554
No 368
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.70 E-value=7.2 Score=35.36 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.1
Q ss_pred hcCCCEEEEccCCCchhHH
Q 007368 177 VAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a 195 (606)
..+.-+++++++|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567789999999999984
No 369
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=53.62 E-value=8.4 Score=34.55 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=16.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHH
Q 007368 181 DLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
.+.+.+|.|||||+ ++-++..++
T Consensus 2 ~i~l~G~nGsGKTT--Ll~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTT--LVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHHHHh
Confidence 46789999999998 334444443
No 370
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=53.61 E-value=5.7 Score=36.33 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.8
Q ss_pred HhcCCCEEEEccCCCchhHH
Q 007368 176 SVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a 195 (606)
+..++-+++++++|||||+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34567899999999999984
No 371
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=53.42 E-value=9.3 Score=30.36 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=32.0
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccC
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 436 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 436 (606)
+..+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3678999999988899999999999998888888754
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=53.32 E-value=7.9 Score=36.09 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.6
Q ss_pred HhcCCCEEEEccCCCchhH
Q 007368 176 SVAGRDLMACAQTGSGKTA 194 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~ 194 (606)
+..++-+++++|.|||||+
T Consensus 13 ~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp --CCCEEEEECCTTSCHHH
T ss_pred CCCCcEEEEECCCCCCHHH
Confidence 4567788999999999999
No 373
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=53.32 E-value=9.1 Score=30.56 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=31.9
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccC
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 436 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 436 (606)
+..+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3678999999988889999999999998888888753
No 374
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=53.06 E-value=11 Score=36.98 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=19.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
.+.-+.+.+++|+|||+ ++.++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTT--ll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTT--SLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHH--HHHHHHHHHH
Confidence 34567899999999999 4445555554
No 375
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=53.04 E-value=10 Score=30.62 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCcc
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDR 435 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~ 435 (606)
+..+++|||.+-..+...+..|...|+.++.+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 367799999998888899999999999988888875
No 376
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=52.86 E-value=1.2e+02 Score=26.57 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=55.7
Q ss_pred hhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007368 380 DKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 380 ~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
+-...+.+.+.. ... ...-+-|.|.+..++..+.+.|...++++..+..+.. .| .-.|.|+|-
T Consensus 45 ~e~~~i~~~I~~-~~~----g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~ 107 (174)
T 3dmn_A 45 AGVDQVVDQLAM-NDS----ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPS 107 (174)
T ss_dssp HHHHHHHHHHHH-HHH----TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEG
T ss_pred HHHHHHHHHHHH-hcc----CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEc
Confidence 334445555554 222 1445888899999999999999999998877765431 12 246999999
Q ss_pred ccccCCCCCCccEEEEecCC
Q 007368 460 VAARGLDIPHVAHVVNFDLP 479 (606)
Q Consensus 460 v~~~GlDip~v~~VI~~d~p 479 (606)
-.+.|+.+ ++||.+++.
T Consensus 108 ~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 108 FLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp GGCTTCCE---EEEEEETCB
T ss_pred cccCCcCC---CEEEEecCC
Confidence 99999987 566666653
No 377
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=52.58 E-value=31 Score=26.09 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=28.6
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCcc
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDR 435 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~ 435 (606)
+..+++|||.+-..+...+..|...|+..+.+-|++
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~ 75 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGL 75 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEET
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCH
Confidence 467899999998888899999999999754333664
No 378
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=52.28 E-value=67 Score=34.35 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
.+-++|+++.|.|||..+
T Consensus 147 ~~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999999854
No 379
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=52.16 E-value=3 Score=43.94 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHH---hc-CCcEEEecHHHHHHHHHhcccccccee
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 296 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~~~~~l~~~~ 296 (606)
..+||.|+++.-+..+++.+... ++.+..++++.+..+....+ .. ..+||||| +.+.. .+++.+++
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----~~~~~-GlDip~v~ 403 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCAR-GIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-----ccccc-CCccccCC
Confidence 46999999999999988888775 56777888877654433222 22 47899999 44433 34677788
Q ss_pred EEE
Q 007368 297 YLA 299 (606)
Q Consensus 297 ~lV 299 (606)
+||
T Consensus 404 ~VI 406 (479)
T 3fmp_B 404 VVI 406 (479)
T ss_dssp ---
T ss_pred EEE
Confidence 776
No 380
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=52.10 E-value=7.5 Score=43.03 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=47.6
Q ss_pred EEEEEccchHHHHHHHHHHHHh--hhcCCcEEEEEECC--------CChHHHHHHH---hc-CCcEEEecHHHHHHHHHh
Q 007368 222 LALILAPTRELSSQIHDEAKKF--SYQTGVKVVVAYGG--------APINQQLREL---ER-GVDILVATPGRLVDLLER 287 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~--~~~~~~~~~~~~gg--------~~~~~~~~~l---~~-~~~Ilv~Tp~~L~~~l~~ 287 (606)
++||.|+++..+..+++.++.. ....++++..++|+ .+..++...+ .. ..+||||| +.+.
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT-----~~~~- 475 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT-----TVAE- 475 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE-----CSCC-
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc-----cccc-
Confidence 4999999999999999998864 12236788888888 6655444333 22 47899999 3333
Q ss_pred ccccccceeEEEE
Q 007368 288 ARVSLQMIRYLAL 300 (606)
Q Consensus 288 ~~~~l~~~~~lVl 300 (606)
..+++.++++||.
T Consensus 476 ~GIDip~v~~VI~ 488 (699)
T 4gl2_A 476 EGLDIKECNIVIR 488 (699)
T ss_dssp TTSCCCSCCCCEE
T ss_pred cCCccccCCEEEE
Confidence 3457888888874
No 381
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=52.10 E-value=6.4 Score=35.13 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
+.-+++++++|||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999994
No 382
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=51.98 E-value=9.8 Score=34.56 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.+..++++++.|||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 457789999999999984
No 383
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=51.70 E-value=8.3 Score=35.34 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=16.2
Q ss_pred hcCCCEEEEccCCCchhHH
Q 007368 177 VAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a 195 (606)
+.++-+++++|+|+|||+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3567889999999999983
No 384
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.59 E-value=7.4 Score=36.01 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+.+++.+|.|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999843
No 385
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=51.56 E-value=8.3 Score=38.04 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=20.7
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 177 VAGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
..++-+.|.+|+|||||+ ++-+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 456888999999999998 445555555
No 386
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=51.36 E-value=27 Score=35.10 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
...+++.+|+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999843
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=50.63 E-value=9.2 Score=33.95 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=15.8
Q ss_pred CEEEEccCCCchhHHhHHHHHHHH
Q 007368 181 DLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l 204 (606)
-.++.+++|||||.. +-++..+
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHH
T ss_pred cEEEECCCCCCHHHH--HHHHHHH
Confidence 568899999999983 3344433
No 388
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=50.62 E-value=13 Score=29.00 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=30.4
Q ss_pred ceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccC
Q 007368 402 SLTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 436 (606)
Q Consensus 402 ~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 436 (606)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988888999999999999777888764
No 389
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=50.45 E-value=7.2 Score=34.95 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q 007368 178 AGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~ 196 (606)
.+..+++++++|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3467999999999999843
No 390
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=50.37 E-value=13 Score=32.52 Aligned_cols=27 Identities=15% Similarity=0.007 Sum_probs=19.4
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 177 VAGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
..+.-+.+.+|.|+|||+ ++-++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 456678899999999998 444444444
No 391
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=50.24 E-value=36 Score=33.12 Aligned_cols=68 Identities=10% Similarity=-0.038 Sum_probs=46.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC-----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEccc-c-----c-cCCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQERELALRSFKSGKTPILVATDV-A-----A-RGLDIP 468 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~v-~-----~-~GlDip 468 (606)
...+||.+++++-|..+++.+... ++.+..++++...... .....+|||+|.- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999988877653 4566677765442211 1345679999942 2 1 357778
Q ss_pred CccEEEE
Q 007368 469 HVAHVVN 475 (606)
Q Consensus 469 ~v~~VI~ 475 (606)
.+.+||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888774
No 392
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=50.12 E-value=22 Score=39.12 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=48.4
Q ss_pred CceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc----ccC-C-CCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA----ARG-L-DIPH 469 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~----~~G-l-Dip~ 469 (606)
..++||.++++.-+....+.++.. ++.+..++|+.+...+...+. ...+|+|+|. .+ ..+ + ++.+
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~ 136 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSI 136 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 368999999998888887777654 789999999875433322222 1478999994 32 222 3 5666
Q ss_pred ccEEEE
Q 007368 470 VAHVVN 475 (606)
Q Consensus 470 v~~VI~ 475 (606)
+.+||.
T Consensus 137 ~~~vVi 142 (696)
T 2ykg_A 137 FTLMIF 142 (696)
T ss_dssp CSEEEE
T ss_pred ccEEEE
Confidence 777774
No 393
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=49.64 E-value=7.1 Score=34.14 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
.++++++.|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999984
No 394
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=49.16 E-value=5.4 Score=35.41 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q 007368 178 AGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~ 196 (606)
.+.-+.++++.|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566889999999999843
No 395
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=49.05 E-value=7.4 Score=34.31 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
-++++++.|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478899999999984
No 396
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=49.03 E-value=8.8 Score=38.17 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+.++++++||||||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999843
No 397
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=48.57 E-value=10 Score=34.47 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=20.3
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHH
Q 007368 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a 195 (606)
.+..+...+ ....+.-+++.+++|||||+.
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHH
Confidence 444444333 224467788999999999984
No 398
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=48.50 E-value=10 Score=33.37 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
+..++++++.|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45688999999999984
No 399
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=48.36 E-value=98 Score=24.32 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=37.7
Q ss_pred ceEEEEE------cchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE
Q 007368 402 SLTLVFV------ETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 456 (606)
Q Consensus 402 ~~~LVF~------~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 456 (606)
.+++||. +....|..+..+|...++....+.=+.....++.+...+....++.|+
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 3588887 567889999999999888877776665555555555555433444443
No 400
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=48.35 E-value=78 Score=25.50 Aligned_cols=56 Identities=9% Similarity=-0.027 Sum_probs=37.8
Q ss_pred CceEEEEE------cchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE
Q 007368 401 QSLTLVFV------ETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 456 (606)
Q Consensus 401 ~~~~LVF~------~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 456 (606)
..+++||. ++...|..+.++|...+++...+.=......++.+.+.......+.++
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 56799998 578899999999999998877765444555555544432333444444
No 401
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=48.28 E-value=25 Score=31.06 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=13.1
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
-++++++.|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999984
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=48.21 E-value=14 Score=35.30 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=16.8
Q ss_pred hcCCCEEEEccCCCchhHH
Q 007368 177 VAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a 195 (606)
+.++.+++.+++|||||+.
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3488999999999999994
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=48.13 E-value=15 Score=37.20 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=19.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHh
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
+.-+++.+++|||||+ ++..+..++.
T Consensus 157 g~vi~lvG~nGsGKTT--ll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTT--SLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHH--HHHHHHhhcc
Confidence 3567899999999999 4445555554
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=48.02 E-value=17 Score=33.18 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=21.8
Q ss_pred CCHHHHhHHHHHhcCCCEEEEccCCCchhHH
Q 007368 165 PTPVQRHAIPISVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 165 p~~~Q~~ai~~i~~~~d~li~a~TGsGKT~a 195 (606)
.++.++... .+..+.-+++++++|||||+.
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHH
Confidence 455555553 345567789999999999984
No 405
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=47.22 E-value=15 Score=29.46 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.8
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCC-cEEeeCccC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 436 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 436 (606)
..+++|||.+-..+...+..|...|+. +..|.|++.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 567999999988899999999999996 778888764
No 406
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=47.07 E-value=9.7 Score=38.22 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+.+++.+|+|+|||+.+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999843
No 407
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=47.04 E-value=13 Score=32.16 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999984
No 408
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=46.68 E-value=16 Score=43.34 Aligned_cols=51 Identities=10% Similarity=-0.023 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhcccCCCCceEEEEEcch-hhHHHHHHHHHhCCCCcEEeeC
Q 007368 382 RSHLMDLLHAQVANGVHGKQSLTLVFVETK-KGADALEHWLYMNGFPATTIHG 433 (606)
Q Consensus 382 ~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~-~~~~~l~~~L~~~~~~~~~lhg 433 (606)
...+.+.+....... .....-+.|.|.+. ..+..+...|...++++....+
T Consensus 324 a~~ia~~I~~l~~~~-g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 324 LEGIAREIHALVREK-GYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp HHHHHHHHHHHHHTS-CCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred HHHHHHHHHHHHHhc-CCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 344555555544311 11233478888887 4788899999999998876544
No 409
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=46.30 E-value=6.1 Score=37.32 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=19.2
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 177 VAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
..|.-+.+.+|.|||||+ ++-++..+
T Consensus 29 ~~Ge~~~iiG~nGsGKST--Ll~~l~Gl 54 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST--MLNIIGCL 54 (235)
T ss_dssp CTTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhcC
Confidence 456778999999999998 44444443
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=46.22 E-value=7.8 Score=34.60 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=16.6
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHh
Q 007368 181 DLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
-+.+++++|||||+. +-++..++.
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 467889999999983 344444444
No 411
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=46.02 E-value=6.7 Score=34.96 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
+..++++++.|||||+..
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999943
No 412
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=45.86 E-value=22 Score=40.98 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=54.1
Q ss_pred ccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC----CCCcEEeeCccCHHHHHHHHHhccCCCC
Q 007368 377 HESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKT 452 (606)
Q Consensus 377 ~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 452 (606)
....|....+-.+.............++||.++++.-+..+.+.++.. ++.+..+||+.+...+...+.. ..
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~ 347 (936)
T 4a2w_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DS 347 (936)
T ss_dssp TTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HC
T ss_pred CCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CC
Confidence 345555443333333332222222667999999998888877776553 8999999999866554333221 36
Q ss_pred cEEEEcc-ccc----cC-C-CCCCccEEEE
Q 007368 453 PILVATD-VAA----RG-L-DIPHVAHVVN 475 (606)
Q Consensus 453 ~iLVaT~-v~~----~G-l-Dip~v~~VI~ 475 (606)
+|+|+|. .+. ++ + .+.++++||.
T Consensus 348 ~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 348 DIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp SEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 7999993 222 22 2 4556677763
No 413
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=45.80 E-value=13 Score=33.80 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=17.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 179 GRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
+.-+.+.+++|||||+. +-++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl--~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL--AQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHH--HHHHHHHH
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHHh
Confidence 34577899999999983 33444443
No 414
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=45.47 E-value=37 Score=32.96 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=49.5
Q ss_pred CceEEEEEcchhhHHHHHHHHHh----CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc-cc----c-cCCCCCCc
Q 007368 401 QSLTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA----A-RGLDIPHV 470 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~-v~----~-~GlDip~v 470 (606)
..++||.++++.-+..+++.++. .+..+..+|++.+..+....+. ..+|+|+|. .+ . .-+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 45699999999999998888874 3578889999888766544443 267999993 22 1 23455666
Q ss_pred cEEEE
Q 007368 471 AHVVN 475 (606)
Q Consensus 471 ~~VI~ 475 (606)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 76663
No 415
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=45.44 E-value=15 Score=38.36 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
.+.+|+.+|+|+|||+.+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 368999999999999853
No 416
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=45.41 E-value=11 Score=37.81 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
-++|+++||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999854
No 417
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=45.18 E-value=13 Score=36.87 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
..+++.+|+|+|||+.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999984
No 418
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=44.99 E-value=15 Score=39.04 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=18.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 178 AGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
.+.+++|.+.||||||.+ +-.++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~-L~~li~sL 191 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG-VNAMILSM 191 (512)
T ss_dssp GSCSEEEECCTTSSHHHH-HHHHHHHH
T ss_pred cCceEEEECCCCCCHHHH-HHHHHHHH
Confidence 357899999999999995 33344333
No 419
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=44.92 E-value=18 Score=34.88 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHh-HHHHHhcCC-----CEEEEccCCCchhHHhH
Q 007368 151 EELNLNIRRCKYVKPTPVQRH-AIPISVAGR-----DLMACAQTGSGKTAAFC 197 (606)
Q Consensus 151 ~~l~~~l~~~~~~~p~~~Q~~-ai~~i~~~~-----d~li~a~TGsGKT~a~l 197 (606)
..+.+.|+..++ .|++-. ++..+++++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 356667766665 355533 344555543 58999999999998443
No 420
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=44.84 E-value=1.7e+02 Score=26.04 Aligned_cols=68 Identities=9% Similarity=-0.118 Sum_probs=17.4
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
.+.+-.+-+....|-|=|+.+.+|+...-.................++||+-........+...+..+
T Consensus 17 ~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 17 GSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp --------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred cccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 34455666777889999998888874332211111111111223456888887777666666666654
No 421
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=44.83 E-value=29 Score=41.11 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=39.0
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHh
Q 007368 181 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKF 243 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~ 243 (606)
..+|.|.-|||||.+...-++..++......... ....-..+|+|+=|+.-|..+.+.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~-~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFP-RPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCS-SCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccC-CCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999986665665554321000000 0001124999999999888888777654
No 422
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=44.70 E-value=7.9 Score=36.11 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=12.5
Q ss_pred HhcCCCEEEEccCCCchhHH
Q 007368 176 SVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a 195 (606)
+..++-+.+.+|+|||||+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34567788999999999984
No 423
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=44.65 E-value=28 Score=29.37 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=31.5
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCC-cEEeeCccC
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 436 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 436 (606)
+..+++|||.+-..+...+..|...|+. +..|.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4678999999988888999999999996 778888864
No 424
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=44.45 E-value=69 Score=30.61 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=58.1
Q ss_pred CCCchhHHhHHHHHHHHHhhhcccCCCCCcccCcEEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHH---
Q 007368 188 TGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQL--- 264 (606)
Q Consensus 188 TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~p~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~--- 264 (606)
.-++|..+ +.-++..+.... -++||.+.++..+..+.+.+.+. .++.+..++|+.+..+..
T Consensus 93 ~~s~K~~~-L~~ll~~~~~~~------------~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i 156 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALDEG------------DKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDII 156 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHHTT------------CCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHH
T ss_pred ccCHHHHH-HHHHHHHHHhCC------------CeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHH
Confidence 45788764 445555443321 13999999999988888888762 156777788887754433
Q ss_pred HHHhcC--Cc-EEEecHHHHHHHHHhccccccceeEEEEeccc
Q 007368 265 RELERG--VD-ILVATPGRLVDLLERARVSLQMIRYLALDEAD 304 (606)
Q Consensus 265 ~~l~~~--~~-Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlDEah 304 (606)
..+..+ +. +|++| +.. ...+++..+++||+=+..
T Consensus 157 ~~F~~~~~~~v~L~st-----~~~-g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 157 SKFQNNPSVKFIVLSV-----KAG-GFGINLTSANRVIHFDRW 193 (271)
T ss_dssp HHHHHCTTCCEEEEEC-----CTT-CCCCCCTTCSEEEECSCC
T ss_pred HHhcCCCCCCEEEEeh-----hhh-cCCcCcccCCEEEEECCC
Confidence 333333 45 56666 111 224567777777764443
No 425
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.26 E-value=9.7 Score=34.07 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
-+++++++|||||+.
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467899999999994
No 426
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=43.93 E-value=24 Score=31.28 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=13.1
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
+-+.+.++.|||||+.
T Consensus 5 ~~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTL 20 (169)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3477899999999983
No 427
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=43.92 E-value=32 Score=33.68 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=40.9
Q ss_pred CceEEEEEcc-----------hhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccC
Q 007368 401 QSLTLVFVET-----------KKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS 449 (606)
Q Consensus 401 ~~~~LVF~~s-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~ 449 (606)
...+|||++. ...++.|.+.|+..||.|. ++-+++..+-.+++++|..
T Consensus 60 ~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 60 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred ccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 3568999987 5689999999999999875 5568999999999999964
No 428
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=43.91 E-value=11 Score=33.75 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.3
Q ss_pred hcCCCEEEEccCCCchhHHh
Q 007368 177 VAGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~ 196 (606)
....-++++++.|||||++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34567899999999999943
No 429
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=43.84 E-value=9.9 Score=34.49 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
.-++++++.|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4789999999999994
No 430
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=43.65 E-value=15 Score=40.97 Aligned_cols=25 Identities=44% Similarity=0.611 Sum_probs=19.8
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 007368 172 AIPISVAGRD--LMACAQTGSGKTAAF 196 (606)
Q Consensus 172 ai~~i~~~~d--~li~a~TGsGKT~a~ 196 (606)
.|..+++|.+ +++.++||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667788866 566789999999874
No 431
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=43.27 E-value=10 Score=33.87 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.3
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
+.-++++++.|||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999994
No 432
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=42.94 E-value=15 Score=33.67 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHhHH
Q 007368 181 DLMACAQTGSGKTAAFCF 198 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ll 198 (606)
-.+++++.|||||+.++.
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 368899999999996433
No 433
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=42.90 E-value=12 Score=33.56 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
...-+++++++|||||+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999984
No 434
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=42.82 E-value=12 Score=38.41 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.4
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
-++|++|||||||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4688999999999853
No 435
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=42.81 E-value=9.2 Score=34.13 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
.-+++++++|||||+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999854
No 436
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=42.76 E-value=2.4e+02 Score=27.26 Aligned_cols=188 Identities=12% Similarity=0.058 Sum_probs=89.6
Q ss_pred cEEEEEccch---HHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHH---H-h--cCCcEEEecH--HHHHHHHHhcc
Q 007368 221 PLALILAPTR---ELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRE---L-E--RGVDILVATP--GRLVDLLERAR 289 (606)
Q Consensus 221 p~~Lil~Ptr---~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~--~~~~Ilv~Tp--~~L~~~l~~~~ 289 (606)
+++.|++|.. .-..++.+.+++.+...++.+.++....+...+... + . .+++-||.+| ......++..
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~- 82 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLS- 82 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHH-
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHH-
Confidence 3477777753 234555555666666668888887776665544333 2 3 3777666554 2222333211
Q ss_pred ccccceeEEEEecccccc-------------------cCC----CHHHHHHHHHhcCCCCCCC-ceEEEEeccChH-HHH
Q 007368 290 VSLQMIRYLALDEADRML-------------------DMG----FEPQIRKIVQQMDMPPPGV-RQTMLFSATFPK-EIQ 344 (606)
Q Consensus 290 ~~l~~~~~lVlDEah~~~-------------------~~g----f~~~i~~i~~~l~~~~~~~-~q~ll~SAT~~~-~i~ 344 (606)
.-..+-+|++|-...-. ... -....+.+++.....+... +++++++..... ...
T Consensus 83 -~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~ 161 (350)
T 3h75_A 83 -QGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQ 161 (350)
T ss_dssp -TTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHH
T ss_pred -HhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHH
Confidence 12345556665432110 011 1233344444442111223 678888765322 111
Q ss_pred HHHH---HhhcCcEEEEeccccCccCceeEEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHH
Q 007368 345 KLAS---DFLANYVFLAVGRVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWL 421 (606)
Q Consensus 345 ~l~~---~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L 421 (606)
...+ ..+... ..+.. ..........+...+.+...+... .....|||.+-..+..+.+.|
T Consensus 162 ~R~~Gf~~~l~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~----~~~~aI~~~~d~~a~g~~~al 224 (350)
T 3h75_A 162 LRERGLRRALAEH------------PQVHL-RQLVYGEWNRERAYRQAQQLLKRY----PKTQLVWSANDEMALGAMQAA 224 (350)
T ss_dssp HHHHHHHHHHHHC------------TTEEE-EEEEECTTCHHHHHHHHHHHHHHC----TTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC------------CCeEE-EEEeeCCCcHHHHHHHHHHHHHhC----CCcCEEEECChHHHHHHHHHH
Confidence 1111 122111 00111 111111112222333333333221 456789999999999999999
Q ss_pred HhCCCC
Q 007368 422 YMNGFP 427 (606)
Q Consensus 422 ~~~~~~ 427 (606)
++.++.
T Consensus 225 ~~~G~~ 230 (350)
T 3h75_A 225 RELGRK 230 (350)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 988765
No 437
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=42.53 E-value=85 Score=34.59 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=50.6
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhc--------------------------------CCcEEEEEECCCChHHHHHHHh-
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQ--------------------------------TGVKVVVAYGGAPINQQLRELE- 268 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~l~- 268 (606)
.+||.+|++.-+..+++.+...... ....+..++++.+..++.....
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 3999999999999999888764321 0124777888887665544332
Q ss_pred ---cCCcEEEecHHHHHHHHHhccccccceeEEEEe
Q 007368 269 ---RGVDILVATPGRLVDLLERARVSLQMIRYLALD 301 (606)
Q Consensus 269 ---~~~~Ilv~Tp~~L~~~l~~~~~~l~~~~~lVlD 301 (606)
....||||| +.+.. .+++..+.+||.+
T Consensus 334 f~~g~~~vlvaT-----~~l~~-Gidip~~~~VI~~ 363 (715)
T 2va8_A 334 FRQRKIKVIVAT-----PTLAA-GVNLPARTVIIGD 363 (715)
T ss_dssp HHTTCSCEEEEC-----GGGGG-SSCCCBSEEEECC
T ss_pred HHcCCCeEEEEC-----hHHhc-ccCCCceEEEEeC
Confidence 247899999 44433 4578888776643
No 438
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=42.47 E-value=1.1e+02 Score=35.82 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=25.6
Q ss_pred CcEEEEEECCCChHHHHHHHhcCCcEEEecHHHHH
Q 007368 248 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLV 282 (606)
Q Consensus 248 ~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~L~ 282 (606)
+-++.++.......+++..+..++.|||+|-....
T Consensus 243 ~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277 (1221)
T ss_dssp TSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHH
T ss_pred CCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHH
Confidence 34566667776667777777889999999965543
No 439
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=42.37 E-value=23 Score=33.15 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=15.8
Q ss_pred CEEEEccCCCchhHHhHHHH
Q 007368 181 DLMACAQTGSGKTAAFCFPI 200 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpi 200 (606)
.+++.++.|+|||+.++--+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58899999999999654433
No 440
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=42.21 E-value=23 Score=31.42 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHHh
Q 007368 178 AGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~ 196 (606)
.+.-+++++..|||||+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456889999999999843
No 441
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=41.90 E-value=38 Score=39.70 Aligned_cols=64 Identities=20% Similarity=0.107 Sum_probs=48.6
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEc-----cccccCCC-CCCccEEE
Q 007368 401 QSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT-----DVAARGLD-IPHVAHVV 474 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----~v~~~GlD-ip~v~~VI 474 (606)
..++||.++++.-+...++.|....-.+..++|+.+ ..+..+|||+| +.+.++-. +.++.+||
T Consensus 227 g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVV 295 (1108)
T 3l9o_A 227 KQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVI 295 (1108)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEE
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEEE
Confidence 567999999999999999998876557888999876 34568899999 34444433 55677776
Q ss_pred E
Q 007368 475 N 475 (606)
Q Consensus 475 ~ 475 (606)
.
T Consensus 296 I 296 (1108)
T 3l9o_A 296 F 296 (1108)
T ss_dssp E
T ss_pred E
Confidence 3
No 442
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=41.87 E-value=31 Score=27.78 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=31.5
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCCcEEeeCccC
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 436 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 436 (606)
+..+++|||.+-..+...+..|...|+....|.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4677999999988888999999999997777888864
No 443
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=41.77 E-value=14 Score=32.21 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+.+++.+..|||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67899999999999954
No 444
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=41.72 E-value=27 Score=29.87 Aligned_cols=36 Identities=6% Similarity=0.007 Sum_probs=30.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCC-cEEeeCccC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 436 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 436 (606)
..+++|||.+-..+...+..|...|+. +..|.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 667999999987888899999999995 778888863
No 445
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=41.48 E-value=10 Score=34.21 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.+.-++++++.|||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356789999999999994
No 446
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=41.39 E-value=11 Score=36.74 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.8
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
.-+++++++|||||+.
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999984
No 447
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=41.35 E-value=21 Score=30.64 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCceEEEEEcch--hhHHHHHHHHHhCCCCcEEeeCccCH
Q 007368 400 KQSLTLVFVETK--KGADALEHWLYMNGFPATTIHGDRTQ 437 (606)
Q Consensus 400 ~~~~~LVF~~s~--~~~~~l~~~L~~~~~~~~~lhg~~~~ 437 (606)
+..+++|||.+- ..+..++..|...|+.+..|.|++..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 366799999987 57888999999999998889998653
No 448
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.34 E-value=18 Score=47.04 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=32.6
Q ss_pred CCHHHHHHHHhCCCCCCCHHHH-hHHH---HHhcCCCEEEEccCCCchhHHhH
Q 007368 149 LGEELNLNIRRCKYVKPTPVQR-HAIP---ISVAGRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~-~ai~---~i~~~~d~li~a~TGsGKT~a~l 197 (606)
|.+.+.+.+...++ .+.+.+. +++. .+.....+|+.+|||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 44566777777777 4555443 3332 34445789999999999999654
No 449
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=41.30 E-value=26 Score=44.95 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=31.8
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHh-HH---HHHhcCCCEEEEccCCCchhHHhH
Q 007368 149 LGEELNLNIRRCKYVKPTPVQRH-AI---PISVAGRDLMACAQTGSGKTAAFC 197 (606)
Q Consensus 149 l~~~l~~~l~~~~~~~p~~~Q~~-ai---~~i~~~~d~li~a~TGsGKT~a~l 197 (606)
+.+.+.+.+...++ .+++.+.. ++ ..+...+.+|+.+|||||||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34456666666666 45565533 22 234556889999999999999654
No 450
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=41.11 E-value=7.8 Score=35.36 Aligned_cols=20 Identities=25% Similarity=0.091 Sum_probs=15.8
Q ss_pred HhcCCCEEEEccCCCchhHH
Q 007368 176 SVAGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a 195 (606)
+..+.-+.+.+++|||||+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34456688999999999984
No 451
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=41.00 E-value=44 Score=31.12 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=21.2
Q ss_pred cHHHHHHHHHhccccccceeEEEEecc
Q 007368 277 TPGRLVDLLERARVSLQMIRYLALDEA 303 (606)
Q Consensus 277 Tp~~L~~~l~~~~~~l~~~~~lVlDEa 303 (606)
||..|++.|.+..++++++.++-+||-
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr 70 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADER 70 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeec
Confidence 455666666667788999999999994
No 452
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=40.85 E-value=16 Score=32.07 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+.++++++.|||||+..
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999843
No 453
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=40.71 E-value=88 Score=26.36 Aligned_cols=55 Identities=11% Similarity=-0.061 Sum_probs=37.6
Q ss_pred ceEEEEEc------chhhHHHHHHHHHhCCCCcEEeeCccCHHHHHHHHHhccCCCCcEEE
Q 007368 402 SLTLVFVE------TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 456 (606)
Q Consensus 402 ~~~LVF~~------s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 456 (606)
.+++||+. ....|..+.++|...+++...+.=+.....++++.+....-..++|+
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 45888876 68899999999999999887776655555555555443333344443
No 454
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=40.70 E-value=13 Score=32.46 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
+.++++++.|||||++.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999843
No 455
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=40.60 E-value=17 Score=32.54 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
.+++.+++|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378899999999994
No 456
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=40.56 E-value=7.9 Score=36.93 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
.+.+++.+|+|+|||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 367999999999999843
No 457
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=40.42 E-value=14 Score=35.97 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
..+++.+|+|+|||+.+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999853
No 458
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=40.05 E-value=21 Score=35.23 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
-+++.++.|||||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 468899999999993
No 459
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=39.70 E-value=12 Score=34.15 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
.+++.++.|||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999953
No 460
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=39.67 E-value=8.7 Score=36.03 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=19.8
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
+..|.-+.+.+|.|||||+ ++-++..+
T Consensus 31 i~~Ge~~~i~G~nGsGKST--Ll~~l~Gl 57 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTS--LLMMIMGE 57 (229)
T ss_dssp EETTCEEEEECCTTSSHHH--HHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 3457788999999999998 44444443
No 461
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=39.67 E-value=30 Score=39.93 Aligned_cols=74 Identities=11% Similarity=0.197 Sum_probs=54.4
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHH---HHHHhcC---CcEEEecHHHHHHHHHhccccccce
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQ---LRELERG---VDILVATPGRLVDLLERARVSLQMI 295 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~---~~Ilv~Tp~~L~~~l~~~~~~l~~~ 295 (606)
++||.|+++.-+..+++.+... .++++..++|+.+..+. +..+..+ ++||||| +.+. ..+++..+
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-----~v~~-~GlDl~~~ 575 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-----EIGS-EGRNFQFA 575 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-----CCTT-CSSCCTTC
T ss_pred CEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-----chhh-cCCCcccC
Confidence 3999999999999888888742 37889999998765443 3344444 8999999 2222 34678889
Q ss_pred eEEEEeccc
Q 007368 296 RYLALDEAD 304 (606)
Q Consensus 296 ~~lVlDEah 304 (606)
++||+-+.+
T Consensus 576 ~~VI~~d~p 584 (968)
T 3dmq_A 576 SHMVMFDLP 584 (968)
T ss_dssp CEEECSSCC
T ss_pred cEEEEecCC
Confidence 999987766
No 462
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=39.66 E-value=13 Score=34.98 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.2
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l~ 205 (606)
+..|.-+.+.++.|||||+ ++-++..++
T Consensus 28 i~~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSS--LLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHH--HHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 3456788999999999998 444444443
No 463
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=39.52 E-value=17 Score=32.06 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCCchhHH
Q 007368 178 AGRDLMACAQTGSGKTAA 195 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a 195 (606)
.+.-++++++.|||||++
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345688999999999984
No 464
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=39.19 E-value=8.7 Score=37.24 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=19.7
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
+..|.-+.+.+|.|||||+ ++-++..+
T Consensus 31 i~~Ge~~~iiGpnGsGKST--Ll~~l~Gl 57 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKST--LFQNFNGI 57 (275)
T ss_dssp EETTSEEEEECCTTSSHHH--HHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHHcC
Confidence 3456778999999999999 44444443
No 465
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=39.14 E-value=9 Score=36.45 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=19.9
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
+..|.-+.+.++.|||||+ ++-++..+
T Consensus 32 i~~Ge~~~i~G~nGsGKST--Ll~~l~Gl 58 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKST--LTKLIQRF 58 (247)
T ss_dssp EETTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 3457788999999999999 44444444
No 466
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=39.11 E-value=20 Score=28.79 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCceEEEEEcchhhHHHHHHHHHhCCCC-cEEeeCccCHH
Q 007368 400 KQSLTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQQ 438 (606)
Q Consensus 400 ~~~~~LVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 438 (606)
+..+++|||.+-..+...+..|...|+. +..+.|++..-
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 3677999999988889999999999995 77888887543
No 467
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=39.09 E-value=2.9e+02 Score=27.18 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=37.8
Q ss_pred EEEEEccchHHHHHHHHHHHHhhhcCCcEEEEEECCCChHHHHHHHhcCCcEEEe-cH----------HHHHHHHHhccc
Q 007368 222 LALILAPTRELSSQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVA-TP----------GRLVDLLERARV 290 (606)
Q Consensus 222 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~-Tp----------~~L~~~l~~~~~ 290 (606)
.+|+..|+-.-... .+..+....+.++..+-- .+...-...+...+.+++. +| ..|.++.++..
T Consensus 93 ~vl~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~- 167 (386)
T 1cs1_A 93 LLVAPHDCYGGSYR---LFDSLAKRGCYRVLFVDQ-GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVG- 167 (386)
T ss_dssp EEEEETTCCHHHHH---HHHHHHTTTSCEEEEECT-TCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTT-
T ss_pred EEEEecCCcHhHHH---HHHHHHHhcCCEEEEeCC-CCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcC-
Confidence 37777776543222 222233334666655432 2333333444445554443 33 23344433322
Q ss_pred cccceeEEEEecccccc
Q 007368 291 SLQMIRYLALDEADRML 307 (606)
Q Consensus 291 ~l~~~~~lVlDEah~~~ 307 (606)
-+||+||+|...
T Consensus 168 -----~~li~De~~~~~ 179 (386)
T 1cs1_A 168 -----AVSVVDNTFLSP 179 (386)
T ss_dssp -----CEEEEECTTTCT
T ss_pred -----CEEEEECCCccc
Confidence 279999999754
No 468
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=39.05 E-value=18 Score=36.63 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.5
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
-.+|++|||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999843
No 469
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=38.93 E-value=13 Score=34.51 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
...+++++++|||||+.
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35689999999999994
No 470
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=38.71 E-value=19 Score=33.06 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.8
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
..+.+.+++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999984
No 471
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=38.49 E-value=28 Score=34.41 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=17.0
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHh
Q 007368 181 DLMACAQTGSGKTAAFCFPIISGIMR 206 (606)
Q Consensus 181 d~li~a~TGsGKT~a~llpil~~l~~ 206 (606)
-+.+.+++|||||+. +-++..++.
T Consensus 94 iigI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhc
Confidence 467799999999984 344555543
No 472
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=38.48 E-value=1.6e+02 Score=24.00 Aligned_cols=45 Identities=13% Similarity=-0.024 Sum_probs=31.1
Q ss_pred CceEEEEEcc------hhhHHHHHHHHHhCCCC---cEEeeCccCHHHHHHHHH
Q 007368 401 QSLTLVFVET------KKGADALEHWLYMNGFP---ATTIHGDRTQQERELALR 445 (606)
Q Consensus 401 ~~~~LVF~~s------~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~R~~~l~ 445 (606)
..+++||..+ ...|..+.++|...+++ ...+.=......++.+.+
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 5569999884 88999999999998887 444443344444444433
No 473
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=38.46 E-value=26 Score=34.66 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 007368 179 GRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a~ 196 (606)
++-+++++++|+|||+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356788999999999843
No 474
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=38.44 E-value=16 Score=32.42 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
..++++++.|||||++.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999853
No 475
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=38.40 E-value=16 Score=33.94 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=19.8
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
+..|.-+.+.+|.|||||+ ++-++..+
T Consensus 32 i~~Ge~~~iiG~NGsGKST--Llk~l~Gl 58 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTT--LLKTISTY 58 (214)
T ss_dssp EETTCCEEEECCTTSSHHH--HHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 3457788999999999999 44444444
No 476
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=38.36 E-value=16 Score=36.26 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHH
Q 007368 179 GRDLMACAQTGSGKTAA 195 (606)
Q Consensus 179 ~~d~li~a~TGsGKT~a 195 (606)
...+++.+++|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 35799999999999984
No 477
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=38.17 E-value=2.6e+02 Score=26.25 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=22.6
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMNGFP 427 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~ 427 (606)
.....|||.+-..+..+.+.|++.++.
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 212 (305)
T 3g1w_A 186 PNLAGIFATEANGGVGVGDAVRLESRA 212 (305)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred CCceEEEECCCcchhhHHHHHHhcCCC
Confidence 456899999999999999999888763
No 478
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=38.14 E-value=14 Score=33.91 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
.++++++.|||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999953
No 479
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=37.98 E-value=20 Score=32.66 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
-.+|.+++|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 468899999999984
No 480
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=37.94 E-value=21 Score=31.80 Aligned_cols=15 Identities=40% Similarity=0.419 Sum_probs=13.0
Q ss_pred CCEEEEccCCCchhH
Q 007368 180 RDLMACAQTGSGKTA 194 (606)
Q Consensus 180 ~d~li~a~TGsGKT~ 194 (606)
.-++++++.|||||+
T Consensus 7 ~~i~i~G~sGsGKTT 21 (174)
T 1np6_A 7 PLLAFAAWSGTGKTT 21 (174)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred eEEEEEeCCCCCHHH
Confidence 457889999999998
No 481
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=37.89 E-value=32 Score=31.07 Aligned_cols=16 Identities=31% Similarity=0.100 Sum_probs=13.6
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
.-+.+.++.|||||+.
T Consensus 23 ~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999984
No 482
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=37.81 E-value=26 Score=31.56 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=33.7
Q ss_pred CceEEEEEcchhhHHH-HHHHHHh---CCCCcEEeeCccCHHHHHHHHHhccCCCCcEEEEcc
Q 007368 401 QSLTLVFVETKKGADA-LEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 459 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~-l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT~ 459 (606)
..++||+|+++..++. +.+.+.. .++.+..++++....++...+. ....|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5679999999988777 5554433 3678888888754332221111 1467999983
No 483
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=37.73 E-value=1.9e+02 Score=30.25 Aligned_cols=112 Identities=7% Similarity=0.011 Sum_probs=70.9
Q ss_pred EEEEEeccchhhhHHHHHHHHHHhcccCCCCceEEEEEcchhhHHHHHHHHHhC-CCCcEEeeC-------c-----cCH
Q 007368 371 QRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHWLYMN-GFPATTIHG-------D-----RTQ 437 (606)
Q Consensus 371 ~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~-~~~~~~lhg-------~-----~~~ 437 (606)
+.+.-+....|.-.+..++... ..++||.|++...|..|++.|+.. +-.+..+-+ . -..
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~--------~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~ 88 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH--------AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDII 88 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS--------SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHH
Confidence 3444455566655555555431 557999999999999999999864 222332211 1 122
Q ss_pred HHHHHHHHhccCCCCcEEEEc-cccccCCCCCC----ccEEEEecCCCCHhHHHHHhh
Q 007368 438 QERELALRSFKSGKTPILVAT-DVAARGLDIPH----VAHVVNFDLPNDIDDYVHRIG 490 (606)
Q Consensus 438 ~~R~~~l~~F~~g~~~iLVaT-~v~~~GlDip~----v~~VI~~d~p~s~~~y~QRiG 490 (606)
.+|..++.++..++..|||+| +.+-.-+.-+. -.+.+..+...+.+++.++.=
T Consensus 89 ~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~ 146 (483)
T 3hjh_A 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 (483)
T ss_dssp HHHHHHHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHH
Confidence 568889999988888899988 43333333332 245566666777888877653
No 484
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=37.73 E-value=17 Score=32.14 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 007368 181 DLMACAQTGSGKTAAF 196 (606)
Q Consensus 181 d~li~a~TGsGKT~a~ 196 (606)
-++++++.|||||++.
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999943
No 485
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=43.94 E-value=6.9 Score=22.16 Aligned_cols=12 Identities=50% Similarity=0.839 Sum_probs=9.2
Q ss_pred Cccccccccccc
Q 007368 2 STSWADSVSASE 13 (606)
Q Consensus 2 ~~~~~~~~~~~~ 13 (606)
+++|+|||...+
T Consensus 8 r~nWs~RV~E~~ 19 (26)
T 2yka_B 8 KTSWADRVREAA 19 (26)
Confidence 578999987544
No 486
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=37.67 E-value=52 Score=29.58 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchhHHh
Q 007368 178 AGRDLMACAQTGSGKTAAF 196 (606)
Q Consensus 178 ~~~d~li~a~TGsGKT~a~ 196 (606)
.+.-++++++.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999943
No 487
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=37.58 E-value=16 Score=33.73 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
..+++++++|||||+..
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999943
No 488
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=37.57 E-value=9.8 Score=36.39 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=19.8
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
+..|.-+.+.+|.|||||+ ++-++..+
T Consensus 30 i~~Ge~~~liG~nGsGKST--Llk~l~Gl 56 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKST--LINVITGF 56 (257)
T ss_dssp EETTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred EeCCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 3456778899999999999 44444444
No 489
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=37.54 E-value=14 Score=33.37 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHH
Q 007368 180 RDLMACAQTGSGKTAA 195 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a 195 (606)
..++++++.|||||+.
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999994
No 490
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=37.46 E-value=15 Score=32.01 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 007368 181 DLMACAQTGSGKTAA 195 (606)
Q Consensus 181 d~li~a~TGsGKT~a 195 (606)
.+++++..|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999984
No 491
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=37.46 E-value=53 Score=35.25 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=49.6
Q ss_pred cEEEEEccchHHHHHHHHHHHHhhhc----CCcEEEEEECCCCh--HHHHHHHhcC-Cc---EEEecHHHHHHHHHhccc
Q 007368 221 PLALILAPTRELSSQIHDEAKKFSYQ----TGVKVVVAYGGAPI--NQQLRELERG-VD---ILVATPGRLVDLLERARV 290 (606)
Q Consensus 221 p~~Lil~Ptr~La~Qi~~~~~~~~~~----~~~~~~~~~gg~~~--~~~~~~l~~~-~~---Ilv~Tp~~L~~~l~~~~~ 290 (606)
.++||.|+++.-|..+++.+.+.... ..-.+..++|..+. ...+..+..+ .+ |+|+| +++.. .+
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l~~-Gi 513 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLLTT-GV 513 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STTTT-TC
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chhhc-Cc
Confidence 45999999999999999999876421 12224555565542 2223344442 23 77777 44433 35
Q ss_pred cccceeEEEEeccc
Q 007368 291 SLQMIRYLALDEAD 304 (606)
Q Consensus 291 ~l~~~~~lVlDEah 304 (606)
++..+++||++..-
T Consensus 514 Dip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 514 DAPTCKNVVLARVV 527 (590)
T ss_dssp CCTTEEEEEEESCC
T ss_pred cchheeEEEEEecC
Confidence 78899999987664
No 492
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=37.44 E-value=17 Score=30.10 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=31.0
Q ss_pred CCceEEEEEcchhh--HHHHHHHHHhCCCCcEEeeCccC
Q 007368 400 KQSLTLVFVETKKG--ADALEHWLYMNGFPATTIHGDRT 436 (606)
Q Consensus 400 ~~~~~LVF~~s~~~--~~~l~~~L~~~~~~~~~lhg~~~ 436 (606)
+..+++|||.+-.. +..++..|...|+.+..|.|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 36789999998776 78899999999999878888864
No 493
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=37.39 E-value=8.6 Score=36.44 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=21.9
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhc
Q 007368 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
.+-++|++||.-.-+|......+..++..+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 345678888888888877667777776665
No 494
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=37.20 E-value=14 Score=33.29 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHHh
Q 007368 180 RDLMACAQTGSGKTAAF 196 (606)
Q Consensus 180 ~d~li~a~TGsGKT~a~ 196 (606)
.-++++++.|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999999843
No 495
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=37.19 E-value=10 Score=36.41 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=20.7
Q ss_pred cceeEEEEecccccccCCCHHHHHHHHHhc
Q 007368 293 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 322 (606)
Q Consensus 293 ~~~~~lVlDEah~~~~~gf~~~i~~i~~~l 322 (606)
.+-++|++||--.-+|......+..++..+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 345688888888777766666666666655
No 496
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=37.17 E-value=10 Score=35.88 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=19.3
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 177 VAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 177 ~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
..|.-+.+.+|.|||||+ ++-++..+
T Consensus 30 ~~Ge~~~l~G~nGsGKST--Ll~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTT--TLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 456778899999999999 44444444
No 497
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=37.16 E-value=15 Score=35.13 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=20.0
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 007368 176 SVAGRDLMACAQTGSGKTAAFCFPIISGI 204 (606)
Q Consensus 176 i~~~~d~li~a~TGsGKT~a~llpil~~l 204 (606)
+..|.-+.+.++.|||||+ ++-++..+
T Consensus 43 i~~Ge~~~i~G~nGsGKST--Ll~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKST--IAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHH--HHHHHhcc
Confidence 3467888999999999999 44444443
No 498
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=37.10 E-value=24 Score=29.75 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=31.1
Q ss_pred CceEEEEEcchhhHHHHHHHHHhCCCC-cEEeeCccC
Q 007368 401 QSLTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 436 (606)
Q Consensus 401 ~~~~LVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 436 (606)
..+++|||.+-..+..++..|+..|+. +..|.|++.
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 677999999988888899999999996 788888864
No 499
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=37.08 E-value=19 Score=36.32 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHH
Q 007368 182 LMACAQTGSGKTAAFCFPIISGIM 205 (606)
Q Consensus 182 ~li~a~TGsGKT~a~llpil~~l~ 205 (606)
.+++++||+|||. ++-++...+
T Consensus 28 ~vi~G~NGaGKT~--ileAI~~~l 49 (371)
T 3auy_A 28 VAIIGENGSGKSS--IFEAVFFAL 49 (371)
T ss_dssp EEEEECTTSSHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHHHHH
No 500
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=36.99 E-value=22 Score=29.65 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCCceEEEEEcchhhHHHHHHHHHhCCCC-cEEeeCcc
Q 007368 399 GKQSLTLVFVETKKGADALEHWLYMNGFP-ATTIHGDR 435 (606)
Q Consensus 399 ~~~~~~LVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~ 435 (606)
.+..+++|||.+-..+..++..|...|+. +..|.|++
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 117 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGY 117 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcH
Done!