BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007370
(606 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 319 bits (818), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 193/455 (42%), Positives = 265/455 (58%), Gaps = 38/455 (8%)
Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 212
N+VFV AE AP+SKTGGLGDV G LP A+AA GHRVMV+SPRY + + A D
Sbjct: 11 NVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRY-------DQYKDAWDTS 63
Query: 213 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSY-----HRPGNP-YGDINGA-FGDNQF 265
+I + + FFH Y+ GVD VF+DHPS+ + G YG G + DNQ
Sbjct: 64 VVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQM 123
Query: 266 RYTLLCYAACEAPLVLPLGGF-----TYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKD 320
R++LLC AA EAP +L L TYGE +F+ NDWH G + L + Y+P+G+Y++
Sbjct: 124 RFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRN 183
Query: 321 ARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDT---GEAVNVLK 377
A+ IHN+S+QG Y L L + + +++ DT G +N +K
Sbjct: 184 AKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFI-------DGYDTPVEGRKINWMK 236
Query: 378 GAIVTADRLLTVSKGYSWE-ITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEH 436
I+ ADR+LTVS Y+ E I+ + G L I+ R + + GI NG+D++EW+PS D++
Sbjct: 237 AGILEADRVLTVSPYYAEELISGIARGCELDNIM--RLTGITGIVNGMDVSEWDPSKDKY 294
Query: 437 IASHY-SIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA 495
I + Y + + K K ALQ E GLP+ PLI FIGRL+ QKG D++ A PE++
Sbjct: 295 ITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ 354
Query: 496 DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPC 555
+D+Q V+LG+G +FE ++ E Y K R V FN P++H I AG D+L +PSRFEPC
Sbjct: 355 EDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPC 414
Query: 556 GLNQLYAMRYGTIPVVHATGGL-----RWKTSIHL 585
GL QL MRYGT +TGGL KT H+
Sbjct: 415 GLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHM 449
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/448 (34%), Positives = 222/448 (49%), Gaps = 33/448 (7%)
Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 212
++ V++E P KTGGL DV G+LP A A G V+ P + + D
Sbjct: 2 QVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG------VTDAQ 55
Query: 213 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS-YHRPGNPYGDIN-GAFGDNQFRYTLL 270
+ F G + F H GV +D P Y RPG+PY D N A+ DN R+ LL
Sbjct: 56 VVSRRDTFAGHITLLFGH--YNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALL 113
Query: 271 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 330
+ E + G + + +DWHAGL P LA++ RP A+S+ +HNL
Sbjct: 114 GWVGAE----MASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNL 163
Query: 331 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390
++QG+ A ++ LP W F H L+ ++ LK + AD + VS
Sbjct: 164 AYQGMFYAHHMNDIQLP--------WSF---FNIHGLEFNGQISFLKAGLYYADHITAVS 212
Query: 391 KGYSWEITTVEGGYGLHEILSSR--KSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG 448
Y+ EIT + YG+ +L R + L+G+ NG+D W+P +D +AS Y+ D L
Sbjct: 213 PTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED 272
Query: 449 KVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDP 508
K + K LQ +GL + PL + RL QKG+DL+ A P +L Q +LG+GDP
Sbjct: 273 KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDP 332
Query: 509 QFESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTI 568
+ A Y + +G++ SHRI G D++L+PSRFEPCGL QLY ++YGT+
Sbjct: 333 VLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL 392
Query: 569 PVVHATGGLRWKTSIHLLEKAVVKVQGG 596
P+V TGGL S LE V G
Sbjct: 393 PLVRRTGGLADTVSDSSLENLADGVASG 420
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 238 bits (607), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 216/431 (50%), Gaps = 37/431 (8%)
Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY--FNGTAADENFTLAKD 210
++ V +E P KTGGL DV G+LP A A G V+ P + D +D
Sbjct: 2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRD 61
Query: 211 LGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS-YHRPGNPYGDIN-GAFGDNQFRYT 268
F G + F H GV +D P Y RPG+PY D N A+ DN R+
Sbjct: 62 --------TFAGHITLLFGH--YNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFA 111
Query: 269 LLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIH 328
LL + E + G + + +DWHAGL P LA++ RP A+S+ +H
Sbjct: 112 LLGWVGAE----MASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVH 161
Query: 329 NLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLT 388
NL++QG+ A ++ LP W F H L+ ++ LK + AD +
Sbjct: 162 NLAYQGMFYAHHMNDIQLP--------WSF---FNIHGLEFNGQISFLKAGLYYADHITA 210
Query: 389 VSKGYSWEITTVEGGYGLHEILSSR--KSVLNGITNGIDITEWNPSSDEHIASHYSIDDL 446
VS Y+ EIT + YG+ +L R + L+G+ NG+D W+P +D +AS Y+ D L
Sbjct: 211 VSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTL 270
Query: 447 SGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSG 506
K + K LQ +GL + PL + RL QKG+DL+ A P +L Q +LG+G
Sbjct: 271 EDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAG 330
Query: 507 DPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYG 566
DP + A Y + +G++ SHRI G D++L+PSRFEPCGL QLY ++YG
Sbjct: 331 DPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYG 390
Query: 567 TIPVVHATGGL 577
T+P+V TGGL
Sbjct: 391 TLPLVRRTGGL 401
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 215/431 (49%), Gaps = 37/431 (8%)
Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY--FNGTAADENFTLAKD 210
++ V +E P KTGGL DV G+LP A A G V+ P + D +D
Sbjct: 2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRD 61
Query: 211 LGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS-YHRPGNPYGDIN-GAFGDNQFRYT 268
F G + F H GV +D P Y RPG+PY D N A+ DN R+
Sbjct: 62 --------TFAGHITLLFGH--YNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFA 111
Query: 269 LLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIH 328
LL + E + G + + +DWHAGL P LA++ RP A+S+ +H
Sbjct: 112 LLGWVGAE----MASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVH 161
Query: 329 NLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLT 388
NL++QG+ A ++ LP W F H L+ ++ LK + AD +
Sbjct: 162 NLAYQGMFYAHHMNDIQLP--------WSF---FNIHGLEFNGQISFLKAGLYYADHITA 210
Query: 389 VSKGYSWEITTVEGGYGLHEILSSR--KSVLNGITNGIDITEWNPSSDEHIASHYSIDDL 446
VS Y+ EIT + YG+ +L R + L+G+ NG+D W+P +D +AS Y+ D L
Sbjct: 211 VSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTL 270
Query: 447 SGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSG 506
K + K LQ +GL + PL + RL QKG+DL+ A P +L Q +LG+G
Sbjct: 271 EDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAG 330
Query: 507 DPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYG 566
DP + A Y + +G++ SHRI G D++L+PSRF PCGL QLY ++YG
Sbjct: 331 DPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYG 390
Query: 567 TIPVVHATGGL 577
T+P+V TGGL
Sbjct: 391 TLPLVRRTGGL 401
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 153/427 (35%), Positives = 216/427 (50%), Gaps = 30/427 (7%)
Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 212
N++ V++E P KTGGL DV G+LP+AL A G R + P Y AA D
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA------VTDPV 55
Query: 213 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYH-RPGNPY-GDINGAFGDNQFRYTLL 270
C + GE+ E +D + +D P+Y+ R G PY G + DN R+ L
Sbjct: 56 KCFEFTDLLGEKA-DLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAAL 114
Query: 271 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 330
AA + G + +DW A + PV + P + S+L IHN+
Sbjct: 115 SLAAAR----IGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETP-----EIPSLLTIHNI 165
Query: 331 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390
+ QG A + L LP+ +G ++ V+ LKG + TA L TVS
Sbjct: 166 AFQGQFGANIFSKLALPAHAFG-----------MEGIEYYNDVSFLKGGLQTATALSTVS 214
Query: 391 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKV 450
Y+ EI T E G GL ++ SR VL+GI NGID WNP++D I +YS +L +
Sbjct: 215 PSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRA 274
Query: 451 QCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQF 510
K A+ + + PL I RL +QKGIDL+ A EI++ + V+LG+GD
Sbjct: 275 LNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVAL 333
Query: 511 ESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPV 570
E + + + + +G+N P+SH + AGCD +++PSRFEPCGL QLYA+RYG IPV
Sbjct: 334 EGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPV 393
Query: 571 VHATGGL 577
V TGGL
Sbjct: 394 VARTGGL 400
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 221 bits (563), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 153/427 (35%), Positives = 212/427 (49%), Gaps = 30/427 (7%)
Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 212
N++ V++E P KTGGL DV G+LP+AL A G R + P Y AA D
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA------VTDPV 55
Query: 213 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYH-RPGNPY-GDINGAFGDNQFRYTLL 270
C + GE+ E +D + +D P+Y+ R G PY G + DN R+ L
Sbjct: 56 KCFEFTDLLGEKA-DLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAAL 114
Query: 271 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 330
AA + G +DW A PV Y + + S+L IHN+
Sbjct: 115 SLAAAR----IGAGVLPGWRPDXVHAHDWQAAXTPV-----YXRYAETPEIPSLLTIHNI 165
Query: 331 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390
+ QG A + L LP+ +G ++ V+ LKG + TA L TVS
Sbjct: 166 AFQGQFGANIFSKLALPAHAFG-----------XEGIEYYNDVSFLKGGLQTATALSTVS 214
Query: 391 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKV 450
Y+ EI T E G GL ++ SR VL+GI NGID WNP++D I +YS +L +
Sbjct: 215 PSYAEEILTAEFGXGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRA 274
Query: 451 QCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQF 510
K A+ + + PL I RL +QKGIDL A EI++ + V+LG+GD
Sbjct: 275 LNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDVAL 333
Query: 511 ESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPV 570
E + + + + +G+N P+SH AGCD +++PSRFEPCGL QLYA+RYG IPV
Sbjct: 334 EGALLAAASRHHGRVGVAIGYNEPLSHLXQAGCDAIIIPSRFEPCGLTQLYALRYGCIPV 393
Query: 571 VHATGGL 577
V TGGL
Sbjct: 394 VARTGGL 400
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 177/427 (41%), Gaps = 90/427 (21%)
Query: 166 KTGGLGDVCGSLPVALAARGHRVMVVSPRY--FNGTAADENFTLAKDLGCCMKICCFGGE 223
K GGL + ++ ALA+ GH V+V +P + F G +++G KI FG E
Sbjct: 16 KVGGLAEALTAISEALASLGHEVLVFTPSHGRFQG----------EEIG---KIRVFGEE 62
Query: 224 QEIAFFHEYREGVDWV-----FVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAP 278
++ +E R + +D + PG G I A + LL E P
Sbjct: 63 VQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWD-GLIRKAVTFGRASVLLLNDLLREEP 121
Query: 279 LVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPA 338
L + +DWH L+ ++ V+ IH L+ + PA
Sbjct: 122 L-----------PDVVHFHDWHTVFAGALIKKYFKIPAVF-------TIHRLNKSKL-PA 162
Query: 339 ATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEIT 398
+ GL SE +P H TG + AD + TVS+GY +
Sbjct: 163 FYFHEAGL-SELAP-----YPDIDPEH---TGGYI---------ADIVTTVSRGYLID-- 202
Query: 399 TVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG-KVQCKIALQ 457
E G+ + + + + NGID + WN S L+G + + K +L
Sbjct: 203 --EWGF-----FRNFEGKITYVFNGIDCSFWNESY------------LTGSRDERKKSLL 243
Query: 458 KELGLPIRPDCPLIGFIGRLDY-QKGIDLIRLAAPEILA-----DDIQFVMLGSGDPQFE 511
+ G+ + FIGR D QKG+D++ L A EIL+ +++F+++G GDP+ E
Sbjct: 244 SKFGMD---EGVTFMFIGRFDRGQKGVDVL-LKAIEILSSKKEFQEMRFIIIGKGDPELE 299
Query: 512 SWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVV 571
W R E + + + + D +++PS FEP GL L AM G IP+
Sbjct: 300 GWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 359
Query: 572 HATGGLR 578
A GGLR
Sbjct: 360 SAVGGLR 366
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 173/427 (40%), Gaps = 90/427 (21%)
Query: 166 KTGGLGDVCGSLPVALAARGHRVMVVSPRY--FNGTAADENFTLAKDLGCCMKICCFGGE 223
K GGL + ++ ALA+ GH V+V +P + F G +++G KI FG E
Sbjct: 16 KVGGLAEALTAISEALASLGHEVLVFTPSHGRFQG----------EEIG---KIRVFGEE 62
Query: 224 QEIAFFHEYREGVDWV-----FVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAP 278
++ +E R + +D + PG G I A + LL E P
Sbjct: 63 VQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWD-GLIRKAVTFGRASVLLLNDLLREEP 121
Query: 279 LVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPA 338
L + +DWH L+ ++ V+ IH L+ + PA
Sbjct: 122 L-----------PDVVHFHDWHTVFAGALIKKYFKIPAVF-------TIHRLNKSKL-PA 162
Query: 339 ATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEIT 398
+ GL + TG + AD + TVS+GY +
Sbjct: 163 FYFHEAGLSE---------LAPYPDIDPEHTGGYI---------ADIVTTVSRGYLID-- 202
Query: 399 TVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG-KVQCKIALQ 457
E G+ + + + + NGID + WN S L+G + + K +L
Sbjct: 203 --EWGF-----FRNFEGKITYVFNGIDCSFWNESY------------LTGSRDERKKSLL 243
Query: 458 KELGLPIRPDCPLIGFIGRLDY-QKGIDLIRLAAPEILA-----DDIQFVMLGSGDPQFE 511
+ G+ + FIGR D QKG+D++ L A EIL+ +++F+++G GDP+ E
Sbjct: 244 SKFGMD---EGVTFMFIGRFDRGQKGVDVL-LKAIEILSSKKEFQEMRFIIIGKGDPELE 299
Query: 512 SWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVV 571
W R E + + + + D +++PS FEP GL L AM G IP+
Sbjct: 300 GWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 359
Query: 572 HATGGLR 578
A GGLR
Sbjct: 360 SAVGGLR 366
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 177/427 (41%), Gaps = 90/427 (21%)
Query: 166 KTGGLGDVCGSLPVALAARGHRVMVVSPRY--FNGTAADENFTLAKDLGCCMKICCFGGE 223
K GGL + ++ ALA+ GH V+V +P + F G +++G KI FG E
Sbjct: 17 KVGGLAEALTAISEALASLGHEVLVFTPSHGRFQG----------EEIG---KIRVFGEE 63
Query: 224 QEIAFFHEYREGVDWV-----FVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAP 278
++ +E R + +D + PG G I A + LL E P
Sbjct: 64 VQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWD-GLIRKAVTFGRASVLLLNDLLREEP 122
Query: 279 LVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPA 338
L + +DWH L+ ++ V+ IH L+ + PA
Sbjct: 123 L-----------PDVVHFHDWHTVFAGALIKKYFKIPAVF-------TIHRLNKSKL-PA 163
Query: 339 ATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEIT 398
+ GL SE +P H TG + AD + TVS+GY +
Sbjct: 164 FYFHEAGL-SELAP-----YPDIDPEH---TGGYI---------ADIVTTVSRGYLID-- 203
Query: 399 TVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG-KVQCKIALQ 457
E G+ + + + + NGID + WN S L+G + + K +L
Sbjct: 204 --EWGF-----FRNFEGKITYVFNGIDCSFWNESY------------LTGSRDERKKSLL 244
Query: 458 KELGLPIRPDCPLIGFIGRLDY-QKGIDLIRLAAPEILA-----DDIQFVMLGSGDPQFE 511
+ G+ + FIGR D QKG+D++ L A EIL+ +++F+++G GDP+ E
Sbjct: 245 SKFGMD---EGVTFMFIGRFDRGQKGVDVL-LKAIEILSSKKEFQEMRFIIIGKGDPELE 300
Query: 512 SWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVV 571
W R E + + + + D +++PS FEP GL L AM G IP+
Sbjct: 301 GWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 360
Query: 572 HATGGLR 578
A GGLR
Sbjct: 361 SAVGGLR 367
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 23/167 (13%)
Query: 419 GITNGIDITEWNPSSDEHIASHYSIDDLSG-KVQCKIALQKELGLPIRPDCPLIGFIGRL 477
G NGID + WN S L+G + + K +L + G+ + FIGR
Sbjct: 1 GSHNGIDCSFWNESY------------LTGSRDERKKSLLSKFGMD---EGVTFMFIGRF 45
Query: 478 DY-QKGIDLIRLAAPEILA-----DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGF 531
D QKG+D++ L A EIL+ +++F+++G GDP+ E W R E + +
Sbjct: 46 DRGQKGVDVL-LKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEML 104
Query: 532 NVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLR 578
+ + D +++PS FEP GL L AM G IP+ A GGLR
Sbjct: 105 SREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLR 151
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 34/168 (20%)
Query: 420 ITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDY 479
+ +G+D+ + P++ E K A +K+LG P+I RL
Sbjct: 168 LPSGVDVKRFTPATPED----------------KSATRKKLGF--TDTTPVIACNSRLVP 209
Query: 480 QKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRD--TEATYKDKYRGWVGFNVPI 535
+KG D + A P+++A D Q +++GSG ++ES +R T+ + K+ G + + I
Sbjct: 210 RKGQDSLIKAMPQVIAARPDAQLLIVGSG--RYESTLRRLATDVSQNVKFLGRLEYQDMI 267
Query: 536 SHRITAGCDILLMPSR-------FEPCGLNQLYAMRYGTIPVVHATGG 576
+ A DI MP+R E G+ L A G +PV+ T G
Sbjct: 268 N--TLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACG-VPVIAGTSG 312
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 34/168 (20%)
Query: 420 ITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDY 479
+ +G+D+ + P++ E K A +K+LG P+I RL
Sbjct: 168 LPSGVDVKRFTPATPED----------------KSATRKKLGF--TDTTPVIACNSRLVP 209
Query: 480 QKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRD--TEATYKDKYRGWVGFNVPI 535
+KG D + A P+++A D Q +++GSG ++ES +R T+ + K+ G + + I
Sbjct: 210 RKGQDSLIKAMPQVIAARPDAQLLIVGSG--RYESTLRRLATDVSQNVKFLGRLEYQDMI 267
Query: 536 SHRITAGCDILLMPSR-------FEPCGLNQLYAMRYGTIPVVHATGG 576
+ A DI MP+R E G+ L A G +PV+ T G
Sbjct: 268 N--TLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACG-VPVIAGTSG 312
>pdb|2Z8D|A Chain A, The Galacto-N-Biose-LACTO-N-Biose I-Binding Protein
(Gl-Bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Lacto-N- Biose
pdb|2Z8D|B Chain B, The Galacto-N-Biose-LACTO-N-Biose I-Binding Protein
(Gl-Bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Lacto-N- Biose
pdb|2Z8E|A Chain A, The Galacto-n-biose-/lacto-n-biose I-binding Protein
(gl-bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Galacto- N-biose
pdb|2Z8E|B Chain B, The Galacto-n-biose-/lacto-n-biose I-binding Protein
(gl-bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Galacto- N-biose
pdb|2Z8F|A Chain A, The Galacto-N-Biose-LACTO-N-Biose I-Binding Protein
(Gl-Bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Lacto-N- Tetraose
pdb|2Z8F|B Chain B, The Galacto-N-Biose-LACTO-N-Biose I-Binding Protein
(Gl-Bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Lacto-N- Tetraose
Length = 412
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 21/94 (22%)
Query: 273 AACEAPLVL-PLGGFTYGEKCIFLVNDW--HAG--------LVPVLLASKYRPHGVYKDA 321
AA EAPL + GG GE + + DW +AG V VL SK+ K+A
Sbjct: 250 AAWEAPLFMTSSGGTGSGEWQVAQLGDWFGNAGKTGPDGGSAVAVLKNSKHP-----KEA 304
Query: 322 RSIL-----VIHNLSHQGVEPAATYKNLGLPSEW 350
L + +L QG+ PAAT ++ PSEW
Sbjct: 305 MEFLDWFNTQVPDLVSQGLVPAATTEDAETPSEW 338
>pdb|3T79|A Chain A, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
pdb|3T79|D Chain D, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
Length = 402
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 374 NVLKGAIVTADRLLTVSKGYSWEITTV----EGGYGLHEILSSRKSVLNGITNGIDITEW 429
++ K + T D ++ S+ E V + YGL ++L S + I I I W
Sbjct: 59 DIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFDYSNVIAILQKISINLW 118
Query: 430 NPSSDEHIASHY 441
NPS+D + H+
Sbjct: 119 NPSTDSLQSKHF 130
>pdb|3SQI|A Chain A, Dna Binding Domain Of Ndc10
Length = 534
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 374 NVLKGAIVTADRLLTVSKGYSWEITTV----EGGYGLHEILSSRKSVLNGITNGIDITEW 429
++ K + T D ++ S+ E V + YGL ++L S + I I I W
Sbjct: 59 DIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFDYSNVIAILQKISINLW 118
Query: 430 NPSSDEHIASHY 441
NPS+D + H+
Sbjct: 119 NPSTDSLQSKHF 130
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 156 FVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCM 215
F T P G G+ G P+ L G ++ + DE +T+ G
Sbjct: 8 FETFTEEPIRLIGEEGEWLGDFPLDL--EGEKLRRLYRDMLAARMLDERYTILIRTGKTS 65
Query: 216 KICCFGGEQ--EIAFFHEYREGVDWVF 240
I G + ++A H R G DWVF
Sbjct: 66 FIAPAAGHEAAQVAIAHAIRPGFDWVF 92
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Query: 442 SIDDLSGK-VQCKIALQKEL-----GLPIRPDCPLIGFIGRLDYQKGI----DLIRLAAP 491
SID LS K V+ K Q E+ + P+ P+I + R D KGI ++ R
Sbjct: 202 SIDPLSEKNVELK---QTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKE 258
Query: 492 EILADDIQFV-MLGSGDPQ----FESWMRDTEATYKDK-YRGWVGFNVPISHRITAGCDI 545
+I + V ++ DP+ FE +R Y K +G + + D+
Sbjct: 259 KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDV 318
Query: 546 LLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRWK 580
+L S E GL AM G + A GG++++
Sbjct: 319 ILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQ 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,945,352
Number of Sequences: 62578
Number of extensions: 908614
Number of successful extensions: 1651
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1604
Number of HSP's gapped (non-prelim): 20
length of query: 606
length of database: 14,973,337
effective HSP length: 104
effective length of query: 502
effective length of database: 8,465,225
effective search space: 4249542950
effective search space used: 4249542950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)