BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007371
(606 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 41/192 (21%)
Query: 65 IDALPRKEALQLFEKRMFNIPNVA--DLEKKMEETIRKDPIAISLTYGGIQVLPERLQCP 122
+ LP L+LF+ R+ +P A L K E +R +PI +Y +V P +
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV-PSLRRLD 137
Query: 123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLK 182
EL E +S+ F+G L+NL+ L L C LK
Sbjct: 138 LGELKRLE-----YISEAAFEG-----------------------LVNLRYLNLGMCNLK 169
Query: 183 DIAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLE----VIAPNVISK 237
DI + L +LE L L+ + + + P LT L+ L WL+ I N
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL-----WLMHAQVATIERNAFDD 224
Query: 238 LSQLEELYMGNS 249
L LEEL + ++
Sbjct: 225 LKSLEELNLSHN 236
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 41/192 (21%)
Query: 65 IDALPRKEALQLFEKRMFNIPNVA--DLEKKMEETIRKDPIAISLTYGGIQVLPERLQCP 122
+ LP L+LF+ R+ +P A L K E +R +PI +Y +V P +
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV-PSLRRLD 137
Query: 123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLK 182
EL E +S+ F+G L+NL+ L L C LK
Sbjct: 138 LGELKRLE-----YISEAAFEG-----------------------LVNLRYLNLGMCNLK 169
Query: 183 DIAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEV----IAPNVISK 237
DI + L +LE L L+ + + + P LT L+ L WL+ I N
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL-----WLMHAQVATIERNAFDD 224
Query: 238 LSQLEELYMGNS 249
L LEEL + ++
Sbjct: 225 LKSLEELNLSHN 236
>pdb|2WRF|A Chain A, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|B Chain B, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|C Chain C, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|D Chain D, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|E Chain E, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|F Chain F, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|G Chain G, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|H Chain H, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|I Chain I, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
Length = 507
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 312 PLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGF 371
P VKSE RL++ GL V ++ + EG W ++G H D G G+
Sbjct: 317 PKYVKSE--RLVLATGLRNVPQIESRGLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGY 374
Query: 372 PRLKHLHVKSCSEILHIVGSV 392
K K+ I + V SV
Sbjct: 375 AADKESTQKAFDGITNKVNSV 395
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 147 GLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC--------RLKDIAIVGQ---LKKLEI 195
GL+ L R +LP+S+ L L+ L + C L G+ L L+
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 196 LILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEEL 244
L L + I+ LP I L L+ L + N L + P I L +LEEL
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGP-AIHHLPKLEEL 234
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 35/153 (22%)
Query: 112 IQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINL 171
I+ PE + P L T+ G Q G L+ L SLP+S+ L NL
Sbjct: 157 IRACPELTELP-EPLASTDASGEHQ-------GLVNLQSLRLEWTGIRSLPASIANLQNL 208
Query: 172 QTLCLDYCRLKDIA-IVGQLKKLEILIL--------------ARSTIKQL---------- 206
++L + L + + L KLE L L R+ +K+L
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268
Query: 207 -PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKL 238
PL+I +LT+L+ LDL C L + P++I++L
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQL 300
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI 230
L L LD C L + + G L L L L+ + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 231 APNVISKLSQLEELYM-GN 248
+ L +L+ELY+ GN
Sbjct: 117 L-GALRGLGELQELYLKGN 134
>pdb|2WR3|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR4|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR5|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
Length = 507
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 312 PLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGF 371
P VKS+ RL++ GL V ++ + EG W ++G H D G G+
Sbjct: 317 PKYVKSD--RLVLATGLRNVPQIESRGLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGY 374
Query: 372 PRLKHLHVKSCSEILHIVGSV 392
K K+ I + V SV
Sbjct: 375 AADKESTQKAFDGITNKVNSV 395
>pdb|2WR0|A Chain A, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|B Chain B, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|C Chain C, Structures Of Influenza H2 Hemagglutinins
pdb|2WR1|A Chain A, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|B Chain B, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|C Chain C, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR2|A Chain A, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|B Chain B, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|C Chain C, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
Length = 509
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 312 PLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGF 371
P VKS+ RL++ GL V ++ + EG W ++G H D G G+
Sbjct: 317 PKYVKSD--RLVLATGLRNVPQIESRGLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGY 374
Query: 372 PRLKHLHVKSCSEILHIVGSV 392
K K+ I + V SV
Sbjct: 375 AADKESTQKAFDGITNKVNSV 395
>pdb|2WR7|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WRB|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRC|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
Length = 506
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 312 PLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGF 371
P VKSE +L++ GL V ++ + EG W ++G H D G G+
Sbjct: 317 PKYVKSE--KLVLATGLRNVPQIESRGLFGAIAGFIEGGWQGMIDGWYGYHHSNDQGSGY 374
Query: 372 PRLKHLHVKSCSEILHIVGSV 392
K K+ I + V SV
Sbjct: 375 AADKESTQKAFDGITNKVNSV 395
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI 230
L L LD C L + + G L L L L+ + ++ LPL L L +LD+S L +
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 117
Query: 231 APNVISKLSQLEELYM-GN 248
+ L +L+ELY+ GN
Sbjct: 118 L-GALRGLGELQELYLKGN 135
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI 230
L L LD C L + + G L L L L+ + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 231 APNVISKLSQLEELYM-GN 248
+ L +L+ELY+ GN
Sbjct: 117 L-GALRGLGELQELYLKGN 134
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI 230
L L LD C L + + G L L L L+ + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 231 APNVISKLSQLEELYM-GN 248
+ L +L+ELY+ GN
Sbjct: 117 L-GALRGLGELQELYLKGN 134
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI 230
L L LD C L + + G L L L L+ + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 231 APNVISKLSQLEELYM-GN 248
+ L +L+ELY+ GN
Sbjct: 117 L-GALRGLGELQELYLKGN 134
>pdb|2WRE|A Chain A, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|B Chain B, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|C Chain C, Structure Of H2 Japan Hemagglutinin With Human Receptor
Length = 505
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 312 PLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGF 371
P VKSE +L++ GL V ++ + EG W ++G H D G G+
Sbjct: 317 PKYVKSE--KLVLATGLRNVPQIESRGLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGY 374
Query: 372 PRLKHLHVKSCSEILHIVGSV 392
K K+ I + V SV
Sbjct: 375 AADKESTQKAFDGITNKVNSV 395
>pdb|2WRD|A Chain A, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|B Chain B, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|C Chain C, Structure Of H2 Japan Hemagglutinin
Length = 505
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 312 PLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGF 371
P VKSE +L++ GL V ++ + EG W ++G H D G G+
Sbjct: 317 PKYVKSE--KLVLATGLRNVPQIESRGLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGY 374
Query: 372 PRLKHLHVKSCSEILHIVGSV 392
K K+ I + V SV
Sbjct: 375 AADKESTQKAFDGITNKVNSV 395
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI 230
L L LD C L + + G L L L L+ + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 231 APNVISKLSQLEELYM-GN 248
+ L +L+ELY+ GN
Sbjct: 117 L-GALRGLGELQELYLKGN 134
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI 230
L L LD C L + + G L L L L+ + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 231 APNVISKLSQLEELYM-GN 248
+ L +L+ELY+ GN
Sbjct: 117 L-GALRGLGELQELYLKGN 134
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 187 VGQLKKLEILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELY 245
+G + L IL L + I +P E+G L L +LDLS+ L I P +S L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI-PQAMSALTMLTEID 707
Query: 246 MGNS 249
+ N+
Sbjct: 708 LSNN 711
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 187 VGQLKKLEILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELY 245
+G + L IL L + I +P E+G L L +LDLS+ L I P +S L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI-PQAMSALTMLTEID 710
Query: 246 MGNS 249
+ N+
Sbjct: 711 LSNN 714
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 135 MQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCL--------------DYCR 180
+S + F GL+ L+ T H S LPS L L L+ L L ++
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326
Query: 181 LKDIAIVGQLKKLEI 195
L ++I G K+LE+
Sbjct: 327 LTHLSIKGNTKRLEL 341
>pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ9|A Chain A, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|B Chain B, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|C Chain C, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|D Chain D, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQA|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1HW8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW9|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HWI|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWJ|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWK|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWL|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
Length = 467
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 351 WLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHI 388
WLET EG + D F RL+ LH L+I
Sbjct: 187 WLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYI 224
>pdb|2Q1L|A Chain A, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|B Chain B, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|C Chain C, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|D Chain D, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|3BGL|A Chain A, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|B Chain B, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|C Chain C, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|D Chain D, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|2R4F|A Chain A, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|B Chain B, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|C Chain C, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|D Chain D, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|3CCT|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
Length = 441
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 351 WLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHI 388
WLET EG + D F RL+ LH L+I
Sbjct: 174 WLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYI 211
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 164 SLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQ 217
SL L NL+ L + +LK I ++G L KLE+L L + I G LTRL+
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN----TGGLTRLK 172
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDL 221
L L LD L+D + LK LEIL + + +K + + +G L++L++LDL
Sbjct: 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDL 157
>pdb|3GWO|A Chain A, Structure Of The C-Terminal Domain Of A Putative Hiv-1
Gp41 Fusion Intermediate
pdb|3GWO|B Chain B, Structure Of The C-Terminal Domain Of A Putative Hiv-1
Gp41 Fusion Intermediate
Length = 54
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 554 ISNSTSVLHMTADNKEAQKLKSEKNLLVADQIQHLFNEKGKTAEIGYI 601
I+N TS++H + + Q+ K+E+ LL D+ L+N T + YI
Sbjct: 6 INNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYI 53
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 168 LINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEI-GQLTRLQLLDLSNCWL 226
L N++ L L +L DI+ + +L L LIL + ++ LP + +LT L+ L L
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ- 120
Query: 227 LEVIAPNVISKLSQLEELYM 246
L+ + V KL+ L LY+
Sbjct: 121 LQSLPDGVFDKLTNLTYLYL 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,634,211
Number of Sequences: 62578
Number of extensions: 665096
Number of successful extensions: 1626
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 60
length of query: 606
length of database: 14,973,337
effective HSP length: 104
effective length of query: 502
effective length of database: 8,465,225
effective search space: 4249542950
effective search space used: 4249542950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)