Query 007371
Match_columns 606
No_of_seqs 385 out of 4088
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 22:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.3E-34 7.1E-39 329.7 27.4 471 4-551 296-944 (1153)
2 PLN00113 leucine-rich repeat r 100.0 9.2E-31 2E-35 301.4 25.5 454 65-584 89-581 (968)
3 PLN00113 leucine-rich repeat r 100.0 3.3E-30 7.2E-35 296.8 25.5 437 100-584 93-557 (968)
4 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-31 4.5E-36 290.8 13.3 75 2-84 259-333 (889)
5 PLN03210 Resistant to P. syrin 99.9 2.9E-24 6.3E-29 247.7 22.9 378 136-584 548-940 (1153)
6 KOG0444 Cytoskeletal regulator 99.9 2.9E-26 6.4E-31 227.2 -5.3 262 100-383 7-279 (1255)
7 KOG4194 Membrane glycoprotein 99.9 1.2E-23 2.6E-28 207.4 4.3 346 101-492 79-432 (873)
8 KOG4194 Membrane glycoprotein 99.9 3.8E-23 8.3E-28 203.9 6.4 372 102-554 54-432 (873)
9 KOG0444 Cytoskeletal regulator 99.9 7.1E-24 1.5E-28 210.5 -4.0 254 89-383 43-302 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 1.4E-24 2.9E-29 205.1 -8.8 259 102-383 47-308 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 7.4E-25 1.6E-29 206.9 -13.1 222 102-330 70-309 (565)
12 KOG0618 Serine/threonine phosp 99.8 6.7E-21 1.5E-25 198.1 -0.5 344 101-492 46-423 (1081)
13 KOG0618 Serine/threonine phosp 99.8 1.6E-20 3.4E-25 195.3 -1.9 384 106-554 4-423 (1081)
14 KOG0617 Ras suppressor protein 99.6 3.1E-18 6.7E-23 143.8 -4.8 164 114-289 25-191 (264)
15 KOG4658 Apoptotic ATPase [Sign 99.6 5.2E-16 1.1E-20 170.5 8.8 262 113-389 514-787 (889)
16 KOG0617 Ras suppressor protein 99.6 1.4E-17 3.1E-22 139.8 -3.8 154 100-256 33-190 (264)
17 PRK15387 E3 ubiquitin-protein 99.6 9.8E-14 2.1E-18 149.5 19.9 247 91-383 192-456 (788)
18 PRK15370 E3 ubiquitin-protein 99.6 5.9E-14 1.3E-18 152.1 16.5 276 71-383 147-426 (754)
19 PRK15387 E3 ubiquitin-protein 99.5 7.3E-14 1.6E-18 150.5 15.9 253 148-486 203-456 (788)
20 PRK15370 E3 ubiquitin-protein 99.5 1.8E-13 3.9E-18 148.4 10.6 225 100-357 199-427 (754)
21 KOG4237 Extracellular matrix p 99.4 1.6E-14 3.4E-19 137.4 0.4 226 100-334 67-362 (498)
22 cd00116 LRR_RI Leucine-rich re 99.3 5.2E-13 1.1E-17 134.2 0.7 136 143-283 78-233 (319)
23 cd00116 LRR_RI Leucine-rich re 99.2 3.1E-12 6.8E-17 128.5 2.7 254 120-383 21-318 (319)
24 KOG4237 Extracellular matrix p 99.2 1.2E-12 2.5E-17 124.8 -1.6 144 105-250 51-199 (498)
25 KOG0532 Leucine-rich repeat (L 99.2 1.4E-12 2.9E-17 130.0 -1.7 179 100-292 75-255 (722)
26 PF14580 LRR_9: Leucine-rich r 99.0 1.6E-10 3.5E-15 102.3 4.5 128 144-279 17-148 (175)
27 KOG0532 Leucine-rich repeat (L 99.0 2.4E-11 5.2E-16 121.2 -3.7 183 104-300 54-241 (722)
28 PF14580 LRR_9: Leucine-rich r 99.0 4E-10 8.7E-15 99.8 3.5 137 109-247 6-148 (175)
29 KOG3207 Beta-tubulin folding c 98.9 4.3E-10 9.4E-15 109.0 2.8 159 120-286 119-286 (505)
30 KOG4341 F-box protein containi 98.9 5.9E-11 1.3E-15 114.3 -4.4 292 171-526 140-442 (483)
31 COG4886 Leucine-rich repeat (L 98.8 2.8E-09 6E-14 110.3 5.5 184 105-300 98-284 (394)
32 COG4886 Leucine-rich repeat (L 98.8 2.7E-09 5.8E-14 110.5 4.6 190 126-330 97-289 (394)
33 KOG3207 Beta-tubulin folding c 98.8 8E-10 1.7E-14 107.2 -0.2 208 143-383 118-337 (505)
34 KOG1259 Nischarin, modulator o 98.8 8.8E-10 1.9E-14 101.6 -1.2 136 144-289 282-417 (490)
35 KOG1259 Nischarin, modulator o 98.7 1.8E-09 4E-14 99.6 -1.8 128 123-254 285-414 (490)
36 PLN03150 hypothetical protein; 98.5 1.9E-07 4.2E-12 101.3 8.6 105 170-283 419-527 (623)
37 KOG4341 F-box protein containi 98.5 7.7E-09 1.7E-13 100.0 -3.6 220 314-553 160-388 (483)
38 PF13855 LRR_8: Leucine rich r 98.4 3.5E-07 7.7E-12 66.3 4.0 55 147-201 2-59 (61)
39 PLN03150 hypothetical protein; 98.4 9.9E-07 2.1E-11 95.9 9.0 100 192-300 419-522 (623)
40 PF13855 LRR_8: Leucine rich r 98.4 3.2E-07 7E-12 66.5 3.3 60 122-181 1-61 (61)
41 KOG1909 Ran GTPase-activating 98.3 9.2E-08 2E-12 90.7 -0.5 188 93-284 84-311 (382)
42 KOG1859 Leucine-rich repeat pr 98.3 9E-09 1.9E-13 105.9 -7.8 129 145-284 163-292 (1096)
43 KOG2120 SCF ubiquitin ligase, 98.3 2.5E-08 5.4E-13 92.2 -4.7 66 314-383 309-374 (419)
44 PRK15386 type III secretion pr 98.3 2E-06 4.3E-11 85.8 8.2 134 344-547 51-187 (426)
45 KOG2120 SCF ubiquitin ligase, 98.2 1.6E-08 3.5E-13 93.4 -7.0 89 449-549 286-375 (419)
46 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.4E-12 96.7 0.1 81 143-224 92-172 (414)
47 PF00931 NB-ARC: NB-ARC domain 98.2 8.5E-08 1.8E-12 94.7 -3.3 71 5-84 102-173 (287)
48 KOG3665 ZYG-1-like serine/thre 98.2 7.1E-07 1.5E-11 96.7 1.9 147 100-247 122-283 (699)
49 KOG1909 Ran GTPase-activating 98.1 1.9E-07 4.1E-12 88.6 -2.9 149 211-383 154-309 (382)
50 KOG0531 Protein phosphatase 1, 98.1 2.7E-07 5.8E-12 95.7 -2.8 173 100-287 72-248 (414)
51 KOG3665 ZYG-1-like serine/thre 98.0 2.5E-06 5.4E-11 92.5 1.8 137 145-284 121-263 (699)
52 PRK15386 type III secretion pr 98.0 1.8E-05 3.9E-10 79.1 7.5 61 316-388 50-110 (426)
53 PF12799 LRR_4: Leucine Rich r 97.9 8.9E-06 1.9E-10 53.9 3.3 36 147-182 2-37 (44)
54 KOG1859 Leucine-rich repeat pr 97.8 3.6E-07 7.8E-12 94.5 -6.9 123 127-255 169-295 (1096)
55 PF12799 LRR_4: Leucine Rich r 97.8 2.3E-05 4.9E-10 52.0 3.9 33 192-224 2-34 (44)
56 KOG2982 Uncharacterized conser 97.8 4.1E-06 9E-11 77.8 -0.5 84 142-225 67-157 (418)
57 KOG4579 Leucine-rich repeat (L 97.8 1.9E-06 4.1E-11 70.8 -2.9 83 125-207 56-139 (177)
58 KOG1644 U2-associated snRNP A' 97.6 8.4E-05 1.8E-09 65.6 4.9 80 102-181 44-125 (233)
59 KOG2982 Uncharacterized conser 97.6 2.2E-05 4.7E-10 73.2 1.0 43 448-491 223-265 (418)
60 KOG1644 U2-associated snRNP A' 97.3 0.00037 8.1E-09 61.6 5.5 99 123-223 43-149 (233)
61 KOG4579 Leucine-rich repeat (L 97.3 2.8E-05 6E-10 64.1 -1.4 83 100-183 53-137 (177)
62 KOG1947 Leucine rich repeat pr 97.1 0.00011 2.4E-09 78.4 -0.0 37 511-550 352-389 (482)
63 KOG2123 Uncharacterized conser 97.0 4.6E-05 1E-09 70.4 -3.9 100 121-245 18-123 (388)
64 KOG2123 Uncharacterized conser 96.9 5.1E-05 1.1E-09 70.1 -4.2 107 168-279 18-125 (388)
65 KOG1947 Leucine rich repeat pr 96.8 0.00015 3.4E-09 77.2 -2.0 175 343-554 186-368 (482)
66 COG5238 RNA1 Ran GTPase-activa 96.6 0.0035 7.6E-08 58.1 5.2 37 143-179 27-68 (388)
67 COG5238 RNA1 Ran GTPase-activa 96.6 0.0011 2.5E-08 61.2 1.9 120 168-288 29-174 (388)
68 KOG2739 Leucine-rich acidic nu 96.5 0.00092 2E-08 61.8 1.1 104 145-249 42-153 (260)
69 KOG3864 Uncharacterized conser 96.3 0.00059 1.3E-08 60.4 -1.2 90 451-553 103-192 (221)
70 KOG3864 Uncharacterized conser 96.3 0.0011 2.4E-08 58.7 0.1 67 420-489 124-190 (221)
71 KOG2739 Leucine-rich acidic nu 96.3 0.0039 8.4E-08 57.8 3.5 115 166-287 40-159 (260)
72 PF00560 LRR_1: Leucine Rich R 95.8 0.0042 9.1E-08 34.1 1.0 21 192-212 1-21 (22)
73 PF13306 LRR_5: Leucine rich r 95.6 0.044 9.6E-07 46.3 7.0 101 141-247 7-111 (129)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0088 1.9E-07 32.8 0.8 21 147-167 1-21 (22)
75 PF13306 LRR_5: Leucine rich r 95.1 0.086 1.9E-06 44.5 7.4 115 120-241 10-128 (129)
76 PF13504 LRR_7: Leucine rich r 94.1 0.037 8E-07 28.1 1.6 16 192-207 2-17 (17)
77 PF13504 LRR_7: Leucine rich r 93.2 0.06 1.3E-06 27.3 1.4 16 538-554 2-17 (17)
78 smart00370 LRR Leucine-rich re 88.9 0.3 6.6E-06 27.8 1.7 21 190-210 1-21 (26)
79 smart00369 LRR_TYP Leucine-ric 88.9 0.3 6.6E-06 27.8 1.7 21 190-210 1-21 (26)
80 KOG0473 Leucine-rich repeat pr 88.7 0.011 2.3E-07 53.8 -6.8 82 143-224 39-121 (326)
81 smart00367 LRR_CC Leucine-rich 86.6 0.39 8.3E-06 27.5 1.2 16 510-525 2-17 (26)
82 KOG0473 Leucine-rich repeat pr 85.1 0.026 5.7E-07 51.3 -6.3 83 120-203 40-123 (326)
83 smart00369 LRR_TYP Leucine-ric 82.3 0.99 2.1E-05 25.7 1.6 19 146-164 2-20 (26)
84 smart00370 LRR Leucine-rich re 82.3 0.99 2.1E-05 25.7 1.6 19 146-164 2-20 (26)
85 smart00364 LRR_BAC Leucine-ric 70.6 2.8 6E-05 23.9 1.2 17 192-208 3-19 (26)
86 KOG3763 mRNA export factor TAP 64.9 2.6 5.7E-05 43.8 0.7 90 316-408 216-305 (585)
87 smart00365 LRR_SD22 Leucine-ri 59.9 7.2 0.00016 22.3 1.6 15 191-205 2-16 (26)
88 PF13516 LRR_6: Leucine Rich r 56.9 5.6 0.00012 22.0 0.8 11 192-202 3-13 (24)
89 PF05729 NACHT: NACHT domain 56.1 14 0.0003 32.2 3.7 44 38-81 118-163 (166)
90 smart00368 LRR_RI Leucine rich 40.2 19 0.00041 20.9 1.3 12 147-158 3-14 (28)
91 KOG4308 LRR-containing protein 31.9 1 2.2E-05 47.4 -8.7 131 148-283 146-302 (478)
92 PRK06893 DNA replication initi 21.8 93 0.002 29.2 3.3 43 39-82 123-175 (229)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.3e-34 Score=329.70 Aligned_cols=471 Identities=19% Similarity=0.241 Sum_probs=329.2
Q ss_pred hhhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccCCCCChHhHHHHhhhhhcC
Q 007371 4 VGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFN 83 (606)
Q Consensus 4 ~~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 83 (606)
..+..+.||||+..+|+.+.....+ .+.||+||||||+.+| +..++....|+++.+++++||+||+++||.
T Consensus 296 krvLLVLDdv~~~~~l~~L~~~~~~--------~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 296 RKVLIFIDDLDDQDVLDALAGQTQW--------FGSGSRIIVITKDKHF-LRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred CeEEEEEeCCCCHHHHHHHHhhCcc--------CCCCcEEEEEeCcHHH-HHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 3455678999999999999887788 8899999999999999 566777789999999999999999999985
Q ss_pred C--CChhhH-----------------------------------------------------------------------
Q 007371 84 I--PNVADL----------------------------------------------------------------------- 90 (606)
Q Consensus 84 ~--~~~~~l----------------------------------------------------------------------- 90 (606)
. |... +
T Consensus 367 ~~~~~~~-~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~i 445 (1153)
T PLN03210 367 KNSPPDG-FMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHI 445 (1153)
T ss_pred CCCCcHH-HHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhhee
Confidence 3 2111 0
Q ss_pred -----------------------------------------HHHHhhhcc------------------------------
Q 007371 91 -----------------------------------------EKKMEETIR------------------------------ 99 (606)
Q Consensus 91 -----------------------------------------~~~~~di~~------------------------------ 99 (606)
...|||+++
T Consensus 446 a~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl 525 (1153)
T PLN03210 446 ACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL 525 (1153)
T ss_pred hhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH
Confidence 113333333
Q ss_pred ------CCCeEEEecCCCCcc--cCCc--ccccccceeeccccc-------ccccchhHhcCCCCCcEEEeeCCcCccCC
Q 007371 100 ------KDPIAISLTYGGIQV--LPER--LQCPCLELLHTEGDG-------SMQVSDHFFKGTEGLKVLNFTRIHFSSLP 162 (606)
Q Consensus 100 ------~~l~~L~l~~~~~~~--l~~~--~~l~~L~~L~~~~~~-------~~~~~~~~~~~l~~L~~L~l~~~~l~~lp 162 (606)
..++.+.+....+.. +... ..+++|+.|.++.+. ...+|.++..-..+||.|++.++.+..+|
T Consensus 526 ~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP 605 (1153)
T PLN03210 526 EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP 605 (1153)
T ss_pred HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC
Confidence 112222222222211 1111 156778877765432 12355554322356888998888888888
Q ss_pred ccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCC-cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCC
Q 007371 163 SSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARS-TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQ 240 (606)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~ 240 (606)
..+ ...+|+.|++.++.+.. +..+..+++|++|+++++ .+..+| .++.+++|++|++.+|.....+|.. ++++++
T Consensus 606 ~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~ 682 (1153)
T PLN03210 606 SNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNK 682 (1153)
T ss_pred CcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCC
Confidence 877 56888889998888877 677788888999998887 466776 4778888999999888888888887 888888
Q ss_pred CCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCC-CCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCC
Q 007371 241 LEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADA-EILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEA 319 (606)
Q Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 319 (606)
|+.|++++|......+ ..+ ++++|+.|++++|.. ..+|.. ..+|+.|++.... ...++..+ .+++
T Consensus 683 L~~L~L~~c~~L~~Lp--------~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~--i~~lP~~~-~l~~ 748 (1153)
T PLN03210 683 LEDLDMSRCENLEILP--------TGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA--IEEFPSNL-RLEN 748 (1153)
T ss_pred CCEEeCCCCCCcCccC--------CcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc--cccccccc-cccc
Confidence 9999888875444333 222 677888888887653 444432 3577888774332 22333322 4667
Q ss_pred CcEEEecCcccccc----cccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccc
Q 007371 320 PRLMMLKGLEKVSI----LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRRE 395 (606)
Q Consensus 320 L~~L~L~~~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 395 (606)
|+.|.+.++..... .+.+......+++|+.|++++|.....+|..+. ++++|+.|+|++|+.++.+..
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~---~L~~L~~L~Ls~C~~L~~LP~----- 820 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ---NLHKLEHLEIENCINLETLPT----- 820 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh---CCCCCCEEECCCCCCcCeeCC-----
Confidence 77777766432110 111111222357899999999998888998776 899999999999998887621
Q ss_pred cccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcC
Q 007371 396 EGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLN 475 (606)
Q Consensus 396 ~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~ 475 (606)
...+++|+. |.+++|..+..++.. .++|+.|++.+ +.++.+ |. .+..++
T Consensus 821 ----~~~L~sL~~-----------------L~Ls~c~~L~~~p~~-------~~nL~~L~Ls~-n~i~~i-P~-si~~l~ 869 (1153)
T PLN03210 821 ----GINLESLES-----------------LDLSGCSRLRTFPDI-------STNISDLNLSR-TGIEEV-PW-WIEKFS 869 (1153)
T ss_pred ----CCCccccCE-----------------EECCCCCcccccccc-------ccccCEeECCC-CCCccC-hH-HHhcCC
Confidence 124667777 999999988876532 36899999988 578877 54 367899
Q ss_pred CCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccc----------cccccCCCcceEeec
Q 007371 476 NLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFT----------RNIIELPKLRYLTIE 545 (606)
Q Consensus 476 ~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~----------~~~~~~~~L~~L~i~ 545 (606)
+|+.|++.+|++++.++. ....+++|+.+++++|++|+.++... .....+|+...+.+.
T Consensus 870 ~L~~L~L~~C~~L~~l~~-----------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~ 938 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSL-----------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFI 938 (1153)
T ss_pred CCCEEECCCCCCcCccCc-----------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccc
Confidence 999999999999988764 23468899999999999998765410 001234555667788
Q ss_pred cCCCCc
Q 007371 546 NCPDME 551 (606)
Q Consensus 546 ~Cp~L~ 551 (606)
+|.+|.
T Consensus 939 nC~~L~ 944 (1153)
T PLN03210 939 NCFNLD 944 (1153)
T ss_pred cccCCC
Confidence 888875
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=9.2e-31 Score=301.40 Aligned_cols=454 Identities=18% Similarity=0.162 Sum_probs=266.7
Q ss_pred CCCCChHhHHHHhhhhhc-CCCCh--hhHHHHHhhhccCCCeEEEecCCCCc-ccCCcccccccceeeccccccc-ccch
Q 007371 65 IDALPRKEALQLFEKRMF-NIPNV--ADLEKKMEETIRKDPIAISLTYGGIQ-VLPERLQCPCLELLHTEGDGSM-QVSD 139 (606)
Q Consensus 65 l~~L~~~~~~~Lf~~~~~-~~~~~--~~l~~~~~di~~~~l~~L~l~~~~~~-~l~~~~~l~~L~~L~~~~~~~~-~~~~ 139 (606)
+..++..+.++|..+... ..|.. ..+ .++++|++++|.+. .+| ...+++|++|++++|.+. .+|.
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l---------~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~ 158 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTS---------SSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPN 158 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccC---------CCCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCCh
Confidence 445566666666665432 33421 123 67888888888874 343 345778888888877765 4555
Q ss_pred hHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCCC
Q 007371 140 HFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLTR 215 (606)
Q Consensus 140 ~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~ 215 (606)
. +.++++|++|++++|.+.. +|..++++++|++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++
T Consensus 159 ~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 159 D-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred H-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 5 4778888888888887765 78888888888888888888765 677888888888888888776 67778888888
Q ss_pred CCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC-CCCccccc-c
Q 007371 216 LQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE-ILPPNFVS-V 293 (606)
Q Consensus 216 L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~ 293 (606)
|++|++++|...+.+|.. ++++++|++|++++|.+....+ ..+.++++|++|++++|.+. .+|..+.. +
T Consensus 238 L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIP--------PSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred CCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCc--------hhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 888888887777777776 7888888888888877655443 56667777777777776653 45554433 6
Q ss_pred CCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCccccccccc-------
Q 007371 294 ELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELD------- 366 (606)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~------- 366 (606)
+|+.|++. ++......+..+..+++|+.|++++|.+.+.++ .+++. +++|+.|++++|.....+|..+.
T Consensus 309 ~L~~L~l~-~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 309 NLEILHLF-SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP--KNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred CCcEEECC-CCccCCcCChhHhcCCCCCEEECcCCCCcCcCC--hHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 67776662 233333344455666666666666665543332 22222 25556666655544444443332
Q ss_pred --------------CCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh------hhhhhccccccc
Q 007371 367 --------------DGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC------YEEMIGFRDIIH 425 (606)
Q Consensus 367 --------------~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~------~~~~~~~~~L~~ 425 (606)
..+.+++|+.|++.+|.--..+ +.....+++|+. .+..+ +.....+++|+.
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--------PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--------ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 0114445555555544321111 000122333333 11111 112334555666
Q ss_pred eeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCC
Q 007371 426 LQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHI 505 (606)
Q Consensus 426 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~ 505 (606)
|.+.+|.-...++.. ...++|+.|++++| ++....|. .+..+++|++|++++|.-...++ ..
T Consensus 457 L~L~~n~~~~~~p~~-----~~~~~L~~L~ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p-----------~~ 518 (968)
T PLN00113 457 LSLARNKFFGGLPDS-----FGSKRLENLDLSRN-QFSGAVPR-KLGSLSELMQLKLSENKLSGEIP-----------DE 518 (968)
T ss_pred EECcCceeeeecCcc-----cccccceEEECcCC-ccCCccCh-hhhhhhccCEEECcCCcceeeCC-----------hH
Confidence 666665543333221 12356666777664 34433342 24566777777777665332332 12
Q ss_pred CCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccccCCccccccccChhhhhhhccccceeeccc
Q 007371 506 GPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQ 584 (606)
Q Consensus 506 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~~~~~~~l~~~~~~~~~l~~l~~l~i~~~ 584 (606)
+..+++|+.|+|++|.-...+|. ....+++|+.|++++|.-...+| ..+..+++|+.+.++++
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p-------------~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPA---SFSEMPVLSQLDLSQNQLSGEIP-------------KNLGNVESLVQVNISHN 581 (968)
T ss_pred HcCccCCCEEECCCCcccccCCh---hHhCcccCCEEECCCCcccccCC-------------hhHhcCcccCEEeccCC
Confidence 34566677777766643333433 44556667777776665444444 23344556666666555
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.3e-30 Score=296.77 Aligned_cols=437 Identities=16% Similarity=0.146 Sum_probs=311.0
Q ss_pred CCCeEEEecCCCC-cccCCcc--cccccceeeccccccc-ccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEE
Q 007371 100 KDPIAISLTYGGI-QVLPERL--QCPCLELLHTEGDGSM-QVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTL 174 (606)
Q Consensus 100 ~~l~~L~l~~~~~-~~l~~~~--~l~~L~~L~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L 174 (606)
+.++.|++++|.+ +.+|... .+++|++|++++|... .+|. ..+++|++|++++|.+.. +|..++++.+|++|
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 7899999999998 4788765 7899999999888764 4554 468999999999999985 89999999999999
Q ss_pred EeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCC
Q 007371 175 CLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFS 251 (606)
Q Consensus 175 ~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 251 (606)
++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL 248 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee
Confidence 999999876 789999999999999999887 68999999999999999999888889988 99999999999999988
Q ss_pred CCccccCCCccchHhhccCCCCCEEEEeeCCCC-CCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcc
Q 007371 252 GWEKVEGGSNASLVELERLTKLATLEIEVADAE-ILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLE 329 (606)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 329 (606)
....+ ..++++++|++|++++|.+. .+|..+.. ++|+.|++. .+.....++..+..+++|+.|++++|.
T Consensus 249 ~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 249 TGPIP--------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS-DNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred ccccC--------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc-CCeeccCCChhHcCCCCCcEEECCCCc
Confidence 76555 78999999999999999874 56766654 899999994 333444566778899999999999988
Q ss_pred cccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-
Q 007371 330 KVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS- 408 (606)
Q Consensus 330 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~- 408 (606)
+.+..+ .++. .+++|+.|++.+|.....+|..+. .+++|+.|++++|..-..+... ...+++|+.
T Consensus 320 ~~~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~l~---~~~~L~~L~Ls~n~l~~~~p~~--------~~~~~~L~~L 385 (968)
T PLN00113 320 FTGKIP--VALT-SLPRLQVLQLWSNKFSGEIPKNLG---KHNNLTVLDLSTNNLTGEIPEG--------LCSSGNLFKL 385 (968)
T ss_pred cCCcCC--hhHh-cCCCCCEEECcCCCCcCcCChHHh---CCCCCcEEECCCCeeEeeCChh--------HhCcCCCCEE
Confidence 766543 3343 359999999999988778887776 8999999999988643332110 122344444
Q ss_pred hhh------hhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEE
Q 007371 409 TIQ------KCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEV 482 (606)
Q Consensus 409 ~i~------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i 482 (606)
.+. ..+..+..+++|+.|.+.++.-...++. .+..+++|+.|+++++ .+...++. ....+++|++|++
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L 459 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS----EFTKLPLVYFLDISNN-NLQGRINS-RKWDMPSLQMLSL 459 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh----hHhcCCCCCEEECcCC-cccCccCh-hhccCCCCcEEEC
Confidence 121 2234456677777788887754333332 2356778888888774 45555343 2456778888888
Q ss_pred ecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccccC---Ccc
Q 007371 483 RNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISN---STS 559 (606)
Q Consensus 483 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~---~~~ 559 (606)
++|.-...++.. ...++|+.|++++|.--..++. ....+++|+.|++++|.-...+|.. ...
T Consensus 460 ~~n~~~~~~p~~------------~~~~~L~~L~ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 524 (968)
T PLN00113 460 ARNKFFGGLPDS------------FGSKRLENLDLSRNQFSGAVPR---KLGSLSELMQLKLSENKLSGEIPDELSSCKK 524 (968)
T ss_pred cCceeeeecCcc------------cccccceEEECcCCccCCccCh---hhhhhhccCEEECcCCcceeeCChHHcCccC
Confidence 777644333321 1224455555554432222222 2333444455554444322222211 122
Q ss_pred ccccccCh--------hhhhhhccccceeeccc
Q 007371 560 VLHMTADN--------KEAQKLKSEKNLLVADQ 584 (606)
Q Consensus 560 ~~~l~~~~--------~~~~~l~~l~~l~i~~~ 584 (606)
++.+++.. ..+..+++|+.|.++++
T Consensus 525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred CCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence 22222222 23557788888888887
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=2.1e-31 Score=290.79 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=67.9
Q ss_pred chhhhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccCCCCChHhHHHHhhhhh
Q 007371 2 AEVGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRM 81 (606)
Q Consensus 2 ~~~~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 81 (606)
+...+..+.||||+..+|+.++.|++. ..+||||++|||+++|+..+|++..++++++|+.+|||+||+++|
T Consensus 259 ~~krfllvLDDIW~~~dw~~I~~~~p~--------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v 330 (889)
T KOG4658|consen 259 EGKRFLLVLDDIWEEVDWDKIGVPFPS--------RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKV 330 (889)
T ss_pred ccCceEEEEecccccccHHhcCCCCCC--------ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhh
Confidence 345567789999999999999999999 889999999999999954449999999999999999999999999
Q ss_pred cCC
Q 007371 82 FNI 84 (606)
Q Consensus 82 ~~~ 84 (606)
|..
T Consensus 331 ~~~ 333 (889)
T KOG4658|consen 331 GPN 333 (889)
T ss_pred ccc
Confidence 865
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.9e-24 Score=247.67 Aligned_cols=378 Identities=20% Similarity=0.230 Sum_probs=262.1
Q ss_pred ccchhHhcCCCCCcEEEeeCCcC------c-cCCccccCCC-CCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcc
Q 007371 136 QVSDHFFKGTEGLKVLNFTRIHF------S-SLPSSLGCLI-NLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQL 206 (606)
Q Consensus 136 ~~~~~~~~~l~~L~~L~l~~~~l------~-~lp~~~~~l~-~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~l 206 (606)
.+....|.++++|+.|.+..+.. . .+|..+..++ +||+|.+.++.+.. |..+ ...+|+.|++.++.+..+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence 35566789999999999976632 2 2777777765 69999999998888 6665 679999999999999999
Q ss_pred cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC-CCCC
Q 007371 207 PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA-DAEI 285 (606)
Q Consensus 207 p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~ 285 (606)
|.++..+++|+.|++++|..+..+|. ++.+++|++|++++|......+ ..++++++|+.|++.+| .+..
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp--------~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP--------SSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc--------hhhhccCCCCEEeCCCCCCcCc
Confidence 99999999999999999888888886 8999999999999987655444 78899999999999975 4677
Q ss_pred CCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccc
Q 007371 286 LPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHEL 365 (606)
Q Consensus 286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 365 (606)
+|..+..++|+.|.+..+... ..++. ...+|+.|++.++.+ ..+ |..+ .+++|++|.+.++.... ++..+
T Consensus 697 Lp~~i~l~sL~~L~Lsgc~~L-~~~p~---~~~nL~~L~L~~n~i-~~l--P~~~--~l~~L~~L~l~~~~~~~-l~~~~ 766 (1153)
T PLN03210 697 LPTGINLKSLYRLNLSGCSRL-KSFPD---ISTNISWLDLDETAI-EEF--PSNL--RLENLDELILCEMKSEK-LWERV 766 (1153)
T ss_pred cCCcCCCCCCCEEeCCCCCCc-ccccc---ccCCcCeeecCCCcc-ccc--cccc--cccccccccccccchhh-ccccc
Confidence 887766678888877443321 11221 235677777777654 222 2222 24677777776543211 11000
Q ss_pred cC-----CCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccC
Q 007371 366 DD-----GEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHG 440 (606)
Q Consensus 366 ~~-----~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 440 (606)
.+ ...+++|+.|++++|+.+..+.. ..+.+++|+. |.+.+|.+++.+|.+
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--------si~~L~~L~~-----------------L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPS--------SIQNLHKLEH-----------------LEIENCINLETLPTG 821 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccCh--------hhhCCCCCCE-----------------EECCCCCCcCeeCCC
Confidence 00 11346777788877776655411 1234455555 888888888777643
Q ss_pred CCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccc
Q 007371 441 QALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDL 520 (606)
Q Consensus 441 ~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 520 (606)
. .+++|+.|++++|.+++.+ |. ..++|++|++++. .++.+|. .+..+++|+.|++.+|
T Consensus 822 ~-----~L~sL~~L~Ls~c~~L~~~-p~----~~~nL~~L~Ls~n-~i~~iP~-----------si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 822 I-----NLESLESLDLSGCSRLRTF-PD----ISTNISDLNLSRT-GIEEVPW-----------WIEKFSNLSFLDMNGC 879 (1153)
T ss_pred C-----CccccCEEECCCCCccccc-cc----cccccCEeECCCC-CCccChH-----------HHhcCCCCCEEECCCC
Confidence 2 5678888888888887776 31 2367888888764 4555543 4567999999999999
Q ss_pred cccccccccccccccCCCcceEeeccCCCCcccccCCccccccccChhhhhhhccccceeeccc
Q 007371 521 PKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQ 584 (606)
Q Consensus 521 ~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~~~~~~~l~~~~~~~~~l~~l~~l~i~~~ 584 (606)
++|+.++. ....+++|+.+.+.+|++|+.++..........+.......+.+...+...+|
T Consensus 880 ~~L~~l~~---~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC 940 (1153)
T PLN03210 880 NNLQRVSL---NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINC 940 (1153)
T ss_pred CCcCccCc---ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccc
Confidence 99999977 56778999999999999999876432221111222222233444455566677
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.9e-26 Score=227.24 Aligned_cols=262 Identities=18% Similarity=0.171 Sum_probs=194.2
Q ss_pred CCCeEEEecCCCC--cccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGI--QVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~--~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 176 (606)
+-+|-+++++|.+ ..+|... .++.++-|.+.......+|+++ +.+.+|..|.+.+|++..+...+..++.||.+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 4567788888888 5788877 7888888888888888899887 7888999999999988888888888899999999
Q ss_pred eCCCCCC---CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371 177 DYCRLKD---IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW 253 (606)
Q Consensus 177 ~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 253 (606)
..|++.. |..|.++..|.+||+++|++++.|..+..-+++-.|++++| .+..+|..++.+++.|-.|++++|.+..
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh
Confidence 9888655 78888999999999999999999998888889999999885 4788888878889999999999988877
Q ss_pred ccccCCCccchHhhccCCCCCEEEEeeCCCC-----CCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCc
Q 007371 254 EKVEGGSNASLVELERLTKLATLEIEVADAE-----ILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGL 328 (606)
Q Consensus 254 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 328 (606)
.+ ..++.+.+|++|.+++|.+. ++|+ .+.|+.|+++..+.....+|.++..+.+|+.++++.|
T Consensus 165 LP---------PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 165 LP---------PQIRRLSMLQTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred cC---------HHHHHHhhhhhhhcCCChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 76 56888889999999888764 3332 2567777776666666666777777777777777764
Q ss_pred ccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 329 EKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 329 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
... . .|+-+-. +++|+.|+|++|.. +.+.... +...+|+.|+++++.
T Consensus 233 ~Lp-~--vPecly~-l~~LrrLNLS~N~i-teL~~~~---~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 233 NLP-I--VPECLYK-LRNLRRLNLSGNKI-TELNMTE---GEWENLETLNLSRNQ 279 (1255)
T ss_pred CCC-c--chHHHhh-hhhhheeccCcCce-eeeeccH---HHHhhhhhhccccch
Confidence 431 1 1222222 25666666666432 2222111 244566666666553
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.2e-23 Score=207.43 Aligned_cols=346 Identities=15% Similarity=0.137 Sum_probs=200.0
Q ss_pred CCeEEEecCCCCcccCCc--ccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEee
Q 007371 101 DPIAISLTYGGIQVLPER--LQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLD 177 (606)
Q Consensus 101 ~l~~L~l~~~~~~~l~~~--~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~ 177 (606)
..+.|++++|.+..+.-. .++++|+.+.+.+|....+|... ....+|+.|+|.+|.|+++ ...+..++.||.|+++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 345666666666444322 36666666666666666666643 3445566666666666652 3355566666667776
Q ss_pred CCCCCC-C-cccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371 178 YCRLKD-I-AIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE 254 (606)
Q Consensus 178 ~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 254 (606)
.|.|+. + +.+..-.++++|++++|.|+.+- ..+..+.+|-.|.++.|. +..+|...+++|++|+.|++..|.+...
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee
Confidence 666666 2 55555566667777776666553 235556666666666643 5566666566677777777766665544
Q ss_pred cccCCCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccc
Q 007371 255 KVEGGSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVS 332 (606)
Q Consensus 255 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 332 (606)
.. ..+..+++|+.|.+..|++..+..++. ..+++.|++...... ..-...+-.+..|+.|+|+.|.+ .
T Consensus 237 e~--------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI-~ 306 (873)
T KOG4194|consen 237 EG--------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAI-Q 306 (873)
T ss_pred hh--------hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhh-h
Confidence 22 456666667777777666666655543 366666666332211 11112234556666777777665 3
Q ss_pred ccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhh
Q 007371 333 ILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQK 412 (606)
Q Consensus 333 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~ 412 (606)
.+....|- ..++|+.|+|++|....--+..|. .+..|++|.++++. +..+.+. . ...+.+|++
T Consensus 307 rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~---~L~~Le~LnLs~Ns-i~~l~e~-----a--f~~lssL~~---- 369 (873)
T KOG4194|consen 307 RIHIDSWS--FTQKLKELDLSSNRITRLDEGSFR---VLSQLEELNLSHNS-IDHLAEG-----A--FVGLSSLHK---- 369 (873)
T ss_pred eeecchhh--hcccceeEeccccccccCChhHHH---HHHHhhhhcccccc-hHHHHhh-----H--HHHhhhhhh----
Confidence 33332221 236677777776544333333333 56667777776653 3332110 0 223444444
Q ss_pred hhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceee
Q 007371 413 CYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVL 492 (606)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~ 492 (606)
|++.+-.--..+... +.++..+++|+.|.+.+ ++++++ +..-+..+++||+|++.+.. +.++.
T Consensus 370 -------------LdLr~N~ls~~IEDa-a~~f~gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~LdL~~Na-iaSIq 432 (873)
T KOG4194|consen 370 -------------LDLRSNELSWCIEDA-AVAFNGLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHLDLGDNA-IASIQ 432 (873)
T ss_pred -------------hcCcCCeEEEEEecc-hhhhccchhhhheeecC-ceeeec-chhhhccCcccceecCCCCc-ceeec
Confidence 777653211112222 24456688999999988 789988 54556788999999998744 55553
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.8e-23 Score=203.94 Aligned_cols=372 Identities=18% Similarity=0.190 Sum_probs=259.5
Q ss_pred CeEEEecCCCCcccCCcc----cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371 102 PIAISLTYGGIQVLPERL----QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD 177 (606)
Q Consensus 102 l~~L~l~~~~~~~l~~~~----~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 177 (606)
.+.|+.+.+++..+.... --+.-++|++++|.+.++....|.++++|+.+++..|.++.+|...+...||+.|++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 466788887775542211 2235678999999999998888899999999999999999999988888999999999
Q ss_pred CCCCCC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371 178 YCRLKD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE 254 (606)
Q Consensus 178 ~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 254 (606)
+|.|+. -+.+..++.||.||++.|.|+.+|. ++..=.++++|++++|. ++.+..+.+..+.+|-+|.++.|.+...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccccc
Confidence 999988 4788899999999999999998874 45556789999999965 4555555588899999999999999998
Q ss_pred cccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371 255 KVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL 334 (606)
Q Consensus 255 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 334 (606)
++ ..++++++|+.|++..|.+..+... .+..+++|+.|.|..|.+...
T Consensus 213 p~--------r~Fk~L~~L~~LdLnrN~irive~l-----------------------tFqgL~Sl~nlklqrN~I~kL- 260 (873)
T KOG4194|consen 213 PQ--------RSFKRLPKLESLDLNRNRIRIVEGL-----------------------TFQGLPSLQNLKLQRNDISKL- 260 (873)
T ss_pred CH--------HHhhhcchhhhhhccccceeeehhh-----------------------hhcCchhhhhhhhhhcCcccc-
Confidence 87 8899999999999998887643211 123344455555555443211
Q ss_pred ccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhh
Q 007371 335 QENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCY 414 (606)
Q Consensus 335 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~ 414 (606)
.++..-.+.++++|+|+.|.....--.++. +++.|+.|+++.+. ++.+..+. +...++|+.
T Consensus 261 --~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf---gLt~L~~L~lS~Na-I~rih~d~-------WsftqkL~~------ 321 (873)
T KOG4194|consen 261 --DDGAFYGLEKMEHLNLETNRLQAVNEGWLF---GLTSLEQLDLSYNA-IQRIHIDS-------WSFTQKLKE------ 321 (873)
T ss_pred --cCcceeeecccceeecccchhhhhhccccc---ccchhhhhccchhh-hheeecch-------hhhccccee------
Confidence 222222346677777776654443334455 77777777777763 44443221 344566666
Q ss_pred hhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeecc
Q 007371 415 EEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHL 494 (606)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~ 494 (606)
|+++. ..+..++.+. +..+..|++|.+++ +.+.++ ...-+..+.+|++|++++.. +.-.+..
T Consensus 322 -----------LdLs~-N~i~~l~~~s---f~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~IED 383 (873)
T KOG4194|consen 322 -----------LDLSS-NRITRLDEGS---FRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIED 383 (873)
T ss_pred -----------Eeccc-cccccCChhH---HHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEec
Confidence 77764 3444444333 45667788888877 677777 44455677888888887643 3222211
Q ss_pred ccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371 495 EELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI 554 (606)
Q Consensus 495 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~ 554 (606)
. ......+|+|++|.+.+. +|++++. .....+++|+.|++.+-+ +.++.
T Consensus 384 a-------a~~f~gl~~LrkL~l~gN-qlk~I~k--rAfsgl~~LE~LdL~~Na-iaSIq 432 (873)
T KOG4194|consen 384 A-------AVAFNGLPSLRKLRLTGN-QLKSIPK--RAFSGLEALEHLDLGDNA-IASIQ 432 (873)
T ss_pred c-------hhhhccchhhhheeecCc-eeeecch--hhhccCcccceecCCCCc-ceeec
Confidence 1 223455788888888775 7888776 445557778888776643 55554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=7.1e-24 Score=210.45 Aligned_cols=254 Identities=21% Similarity=0.262 Sum_probs=160.3
Q ss_pred hHHHHHhhhcc-CCCeEEEecCCCCcccCCcc-cccccceeecccccc--cccchhHhcCCCCCcEEEeeCCcCccCCcc
Q 007371 89 DLEKKMEETIR-KDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGS--MQVSDHFFKGTEGLKVLNFTRIHFSSLPSS 164 (606)
Q Consensus 89 ~l~~~~~di~~-~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 164 (606)
.+.++..++.+ .++.||+++.|.+..+.... .++.||++....|.. ..+|.++| .++.|.+|||++|++.+.|..
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~ 121 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTN 121 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchh
Confidence 33444444444 66777777777765555444 667777777655543 34666664 477777777777777777777
Q ss_pred ccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCC
Q 007371 165 LGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE 242 (606)
Q Consensus 165 ~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~ 242 (606)
+.+-+++-+|++++|+|.. | +.+.++..|-+||+++|++..+|+.+..|..|++|.+++|...-. --..+..+++|+
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLS 200 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhh
Confidence 7777777777777777666 5 445567777777777777777777777777777777777543211 111144556666
Q ss_pred EEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcE
Q 007371 243 ELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRL 322 (606)
Q Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 322 (606)
+|.+++.+.+-. .++..+..+.+|+.++++.|++..+|.. +-.+++|+.
T Consensus 201 vLhms~TqRTl~-------N~Ptsld~l~NL~dvDlS~N~Lp~vPec------------------------ly~l~~Lrr 249 (1255)
T KOG0444|consen 201 VLHMSNTQRTLD-------NIPTSLDDLHNLRDVDLSENNLPIVPEC------------------------LYKLRNLRR 249 (1255)
T ss_pred hhhcccccchhh-------cCCCchhhhhhhhhccccccCCCcchHH------------------------Hhhhhhhhe
Confidence 666666543221 1225566666777777777666655543 456677788
Q ss_pred EEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 323 MMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 323 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
|+|++|.+.. +... .+.+ .+|++|+++.| .++.+|..+- .+++|+.|.+.+++
T Consensus 250 LNLS~N~ite-L~~~--~~~W-~~lEtLNlSrN-QLt~LP~avc---KL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 250 LNLSGNKITE-LNMT--EGEW-ENLETLNLSRN-QLTVLPDAVC---KLTKLTKLYANNNK 302 (1255)
T ss_pred eccCcCceee-eecc--HHHH-hhhhhhccccc-hhccchHHHh---hhHHHHHHHhccCc
Confidence 8888876633 2221 2222 78999999986 4556776555 78888888887764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.4e-24 Score=205.11 Aligned_cols=259 Identities=24% Similarity=0.300 Sum_probs=178.4
Q ss_pred CeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCC
Q 007371 102 PIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 102 l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 180 (606)
+..+.++.|.+..+.+.. ++..+.+|....|....+|..+ .++..++.++.++|++..+|..++.+..|+.++.+.+.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 455666667665555555 6667777777777777777766 56777777777777777777777777777777777777
Q ss_pred CCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 181 LKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 181 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
+.. |+.++.+..|..++..+|++.++|++++++.+|..|++.+|. ...+|+..+. ++.|++|+...|.....+
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~tlP---- 199 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLETLP---- 199 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhhcCC----
Confidence 666 677777777777777777777777777777777777777744 4455555333 777777777666665554
Q ss_pred CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCc-ccCCCCCcEEEecCcccccccccch
Q 007371 260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPL-LVKSEAPRLMMLKGLEKVSILQEND 338 (606)
Q Consensus 260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~~~~~ 338 (606)
.+++.+.+|..|++..|++..+|..-++..|..|++ +.+.....+.+ ..+++++..|++.+|+. + ..|+
T Consensus 200 -----~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~--g~N~i~~lpae~~~~L~~l~vLDLRdNkl-k--e~Pd 269 (565)
T KOG0472|consen 200 -----PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV--GENQIEMLPAEHLKHLNSLLVLDLRDNKL-K--EVPD 269 (565)
T ss_pred -----hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh--cccHHHhhHHHHhcccccceeeecccccc-c--cCch
Confidence 567777777777777777777774444466666655 44444444444 34788888899988765 2 2355
Q ss_pred hHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 339 GTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 339 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
.+.. +.+|++|+++++ .++.+|..++ ++ .|+.|.+.|+|
T Consensus 270 e~cl-LrsL~rLDlSNN-~is~Lp~sLg---nl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICL-LRSLERLDLSNN-DISSLPYSLG---NL-HLKFLALEGNP 308 (565)
T ss_pred HHHH-hhhhhhhcccCC-ccccCCcccc---cc-eeeehhhcCCc
Confidence 5554 488999999986 4556676665 88 89999999887
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=7.4e-25 Score=206.86 Aligned_cols=222 Identities=20% Similarity=0.271 Sum_probs=106.0
Q ss_pred CeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCC
Q 007371 102 PIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 102 l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 180 (606)
+..+.++.|.+.++|..+ .+..+..++.+.|....+|+.+ ..+..|+.|++++|.+..+|++++.+..|..++..+|.
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc
Confidence 444444444444444433 4444444444444444444444 33444444444444444444444444444444444444
Q ss_pred CCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 181 LKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 181 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
+.. |+.++.+.+|-.+++.+|.++++|+..-+++.|++|+... +..+.+|++ ++.+.+|..|++..|.+...+ .++
T Consensus 149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg~l~~L~~LyL~~Nki~~lP-ef~ 225 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LGGLESLELLYLRRNKIRFLP-EFP 225 (565)
T ss_pred cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hcchhhhHHHHhhhcccccCC-CCC
Confidence 444 4444444444444444444444444433344444444433 233444444 444444444444444443333 121
Q ss_pred Cccc---------------hHhhccCCCCCEEEEeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEE
Q 007371 260 SNAS---------------LVELERLTKLATLEIEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLM 323 (606)
Q Consensus 260 ~~~~---------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 323 (606)
.... .+.++++++|..|++..|+++.+|..++. ++|++|++ +++.....+..++++ +|+.|
T Consensus 226 gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl--SNN~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 226 GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL--SNNDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc--cCCccccCCcccccc-eeeeh
Confidence 1110 02234566666666666666666666554 55666665 334444555566666 66666
Q ss_pred EecCccc
Q 007371 324 MLKGLEK 330 (606)
Q Consensus 324 ~L~~~~~ 330 (606)
-+.||..
T Consensus 303 ~leGNPl 309 (565)
T KOG0472|consen 303 ALEGNPL 309 (565)
T ss_pred hhcCCch
Confidence 6666543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=6.7e-21 Score=198.05 Aligned_cols=344 Identities=18% Similarity=0.174 Sum_probs=217.8
Q ss_pred CCeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 101 DPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 101 ~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
+++.|++++|.+..+|..+ .+.+|+.|.++.|.+..+|.+. .++++|++|.|.+|.+..+|.++..+++|++|++++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 3899999999999999887 8899999999999999999776 8899999999999999999999999999999999999
Q ss_pred CCCC-CcccCCCCCCCEeeecCC-cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371 180 RLKD-IAIVGQLKKLEILILARS-TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE 257 (606)
Q Consensus 180 ~~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 257 (606)
.+.. |..+..+..+..++.++| .+..++..- .+++++..+...+.++.+ +..++. .|++..|.+. .
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~-~--- 192 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME-V--- 192 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh-h---
Confidence 9888 888888888888888887 333333221 444455444444444444 444444 4555555443 1
Q ss_pred CCCccchHhhccC--------------------CCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCC
Q 007371 258 GGSNASLVELERL--------------------TKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKS 317 (606)
Q Consensus 258 ~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 317 (606)
..+..+ ++|+.|+...|.+..+-......+|+.+++..... ...+..+..+
T Consensus 193 -------~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--~~lp~wi~~~ 263 (1081)
T KOG0618|consen 193 -------LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--SNLPEWIGAC 263 (1081)
T ss_pred -------hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh--hcchHHHHhc
Confidence 112222 23444444444444333333336777777643322 2233556778
Q ss_pred CCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccc
Q 007371 318 EAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEG 397 (606)
Q Consensus 318 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 397 (606)
.+|+.++...|.+ ...|..+... .+|+.|.+..| .++.+|.... ++.+|++|++..+. +..+..
T Consensus 264 ~nle~l~~n~N~l---~~lp~ri~~~-~~L~~l~~~~n-el~yip~~le---~~~sL~tLdL~~N~-L~~lp~------- 327 (1081)
T KOG0618|consen 264 ANLEALNANHNRL---VALPLRISRI-TSLVSLSAAYN-ELEYIPPFLE---GLKSLRTLDLQSNN-LPSLPD------- 327 (1081)
T ss_pred ccceEecccchhH---HhhHHHHhhh-hhHHHHHhhhh-hhhhCCCccc---ccceeeeeeehhcc-ccccch-------
Confidence 8888888888766 2223333332 67788887775 4555666544 78899999998774 332210
Q ss_pred cccccccccchh---hhhhhhh--------hhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCccccc
Q 007371 398 ELRRWEGNLNST---IQKCYEE--------MIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAI 466 (606)
Q Consensus 398 ~~~~~~~~L~~~---i~~~~~~--------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~ 466 (606)
..|..+... +...... -...+.|+.|.+.+-.--...+ +.+..+.+||.|++++ ++|.++
T Consensus 328 ---~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~----p~l~~~~hLKVLhLsy-NrL~~f- 398 (1081)
T KOG0618|consen 328 ---NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF----PVLVNFKHLKVLHLSY-NRLNSF- 398 (1081)
T ss_pred ---HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch----hhhccccceeeeeecc-cccccC-
Confidence 001111100 0000000 0112334445554422111111 4456788899999988 788887
Q ss_pred chhHHhhcCCCcEEEEecCCCcceee
Q 007371 467 PANLLRCLNNLVYLEVRNCDSLEEVL 492 (606)
Q Consensus 467 ~~~~~~~l~~L~~L~i~~c~~l~~l~ 492 (606)
|...+.+++.|++|++++ +.|+.++
T Consensus 399 pas~~~kle~LeeL~LSG-NkL~~Lp 423 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSG-NKLTTLP 423 (1081)
T ss_pred CHHHHhchHHhHHHhccc-chhhhhh
Confidence 777788888888888888 4466665
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-20 Score=195.33 Aligned_cols=384 Identities=20% Similarity=0.221 Sum_probs=185.3
Q ss_pred EecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-
Q 007371 106 SLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD- 183 (606)
Q Consensus 106 ~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~- 183 (606)
+.+...+..+|..+ .-..+..|++..|.....|-++..+.-+|+.|+++.|.+..+|..+..+.+|+.|+++.|.+..
T Consensus 4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~v 83 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSV 83 (1081)
T ss_pred ccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhC
Confidence 34444444444443 2233555555555554444444444444666666666555555555555666666666655555
Q ss_pred CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCC--------------
Q 007371 184 IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS-------------- 249 (606)
Q Consensus 184 ~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~-------------- 249 (606)
|.+.+++.+|++|+|.+|.+..+|.++..+++|+.|++++|. .+.+|.- +..++.+..+..++|
T Consensus 84 p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~ 161 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKL 161 (1081)
T ss_pred chhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhh
Confidence 555555666666666655555566566666666666665543 3344443 444554444444444
Q ss_pred -----CCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEE
Q 007371 250 -----FSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMM 324 (606)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 324 (606)
.+.... +.++..+++ .|++..|.+. .-......+|+.+......... ....-++++.|.
T Consensus 162 ~l~~n~l~~~~--------~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~-----l~~~g~~l~~L~ 225 (1081)
T KOG0618|consen 162 DLRLNVLGGSF--------LIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSE-----LEISGPSLTALY 225 (1081)
T ss_pred hhhhhhcccch--------hcchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhcccce-----EEecCcchheee
Confidence 332222 133444433 4566655554 1111111233333221000000 001123344444
Q ss_pred ecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEecccccccccccccccc
Q 007371 325 LKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEG 404 (606)
Q Consensus 325 L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 404 (606)
...|........| ...+|++++++.+ ....+|.|+. .+.+|+.+.+.++.
T Consensus 226 a~~n~l~~~~~~p-----~p~nl~~~dis~n-~l~~lp~wi~---~~~nle~l~~n~N~--------------------- 275 (1081)
T KOG0618|consen 226 ADHNPLTTLDVHP-----VPLNLQYLDISHN-NLSNLPEWIG---ACANLEALNANHNR--------------------- 275 (1081)
T ss_pred eccCcceeecccc-----ccccceeeecchh-hhhcchHHHH---hcccceEecccchh---------------------
Confidence 4444333222111 1134455555442 2333444333 44445544444433
Q ss_pred ccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCC-CcEEEEe
Q 007371 405 NLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNN-LVYLEVR 483 (606)
Q Consensus 405 ~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~-L~~L~i~ 483 (606)
+..-+..+....+|+.|.+..+ .++.++.. .+.+.+|++|++.. ++|.++ |..++.-+.. |+.|.++
T Consensus 276 -----l~~lp~ri~~~~~L~~l~~~~n-el~yip~~----le~~~sL~tLdL~~-N~L~~l-p~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 276 -----LVALPLRISRITSLVSLSAAYN-ELEYIPPF----LEGLKSLRTLDLQS-NNLPSL-PDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred -----HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc----ccccceeeeeeehh-cccccc-chHHHhhhhHHHHHHhhh
Confidence 2333344444444444666554 45555422 24577888888877 677777 3333333222 4444443
Q ss_pred cCCCcceeeccccccc--------------cccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCC
Q 007371 484 NCDSLEEVLHLEELIN--------------ADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPD 549 (606)
Q Consensus 484 ~c~~l~~l~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~ 549 (606)
. ..+...+..++... +..-..+..+++||-|++++. .|.++|. .....+..|+.|.++|- +
T Consensus 344 ~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpa--s~~~kle~LeeL~LSGN-k 418 (1081)
T KOG0618|consen 344 S-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPA--SKLRKLEELEELNLSGN-K 418 (1081)
T ss_pred h-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCH--HHHhchHHhHHHhcccc-h
Confidence 2 22333332221110 111223556788888888775 6777765 45566777788877774 5
Q ss_pred Ccccc
Q 007371 550 METFI 554 (606)
Q Consensus 550 L~~l~ 554 (606)
|+.+|
T Consensus 419 L~~Lp 423 (1081)
T KOG0618|consen 419 LTTLP 423 (1081)
T ss_pred hhhhh
Confidence 77776
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3.1e-18 Score=143.80 Aligned_cols=164 Identities=26% Similarity=0.339 Sum_probs=90.8
Q ss_pred ccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCC
Q 007371 114 VLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKK 192 (606)
Q Consensus 114 ~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~ 192 (606)
.++..+.+.++..|.+++|.+..+|..+ .++++|++|++.+|+++++|.+++.+++||.|++.-|++.. |..++.++-
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 3344444555555555555555555554 45555555555555555555555555555555555555544 555555555
Q ss_pred CCEeeecCCcCC--cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccC
Q 007371 193 LEILILARSTIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERL 270 (606)
Q Consensus 193 L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 270 (606)
|++||+.+|++. .+|..+..++-|+.|++++|. .+.+|.. ++++++||.|.+..|.+...+ .+++.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~lp---------keig~l 172 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLSLP---------KEIGDL 172 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhhCc---------HHHHHH
Confidence 555555555444 455555555555555555532 3455555 555556665555555544443 455566
Q ss_pred CCCCEEEEeeCCCCCCCcc
Q 007371 271 TKLATLEIEVADAEILPPN 289 (606)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~ 289 (606)
+.|++|.|.+|++..+|+.
T Consensus 173 t~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHhcccceeeecChh
Confidence 6666666666665555544
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.63 E-value=5.2e-16 Score=170.54 Aligned_cols=262 Identities=19% Similarity=0.199 Sum_probs=164.8
Q ss_pred cccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCc--CccCCc-cccCCCCCcEEEeeCCC-CCC-Cccc
Q 007371 113 QVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIH--FSSLPS-SLGCLINLQTLCLDYCR-LKD-IAIV 187 (606)
Q Consensus 113 ~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~~lp~-~~~~l~~L~~L~l~~~~-~~~-~~~i 187 (606)
...|........|...+.++....++.. .+.+.|+.|-+.+|. +..++. .|..+++|++|++++|. +.. |..|
T Consensus 514 ~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 514 SEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred cccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 3455555566777777777766666654 345577787777775 444444 35668888888888775 455 7888
Q ss_pred CCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhh
Q 007371 188 GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVEL 267 (606)
Q Consensus 188 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 267 (606)
+.|.+||+|+++++.++.+|.++++|++|.+|++..+.....+|.. +..|++|++|.+...... .+...+.++
T Consensus 592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~------~~~~~l~el 664 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALS------NDKLLLKEL 664 (889)
T ss_pred hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccc------cchhhHHhh
Confidence 8888888888888888888888888888888888876655555433 566888888877665411 122334566
Q ss_pred ccCCCCCEEEEeeCCCCCCCccccccCCc----EEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccccc--chhHH
Q 007371 268 ERLTKLATLEIEVADAEILPPNFVSVELQ----RYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQE--NDGTK 341 (606)
Q Consensus 268 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~--~~~~~ 341 (606)
.++.+|+.+.+.......+........|. .+.+ ...........+..+.+|+.|.+.+|........ .....
T Consensus 665 ~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~--~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~ 742 (889)
T KOG4658|consen 665 ENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI--EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV 742 (889)
T ss_pred hcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh--cccccceeecccccccCcceEEEEcCCCchhhcccccccch
Confidence 66666766666543331111111112222 2222 1122233445677788888888888776432221 11111
Q ss_pred H-hhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEec
Q 007371 342 M-LLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIV 389 (606)
Q Consensus 342 ~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~ 389 (606)
. .|+++..+.+.+|.......... -.|+|+.|.+..|+.++.+.
T Consensus 743 ~~~f~~l~~~~~~~~~~~r~l~~~~----f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 743 LLCFPNLSKVSILNCHMLRDLTWLL----FAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hhhHHHHHHHHhhccccccccchhh----ccCcccEEEEecccccccCC
Confidence 1 25778888888887777654322 56899999999999887763
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-17 Score=139.84 Aligned_cols=154 Identities=23% Similarity=0.333 Sum_probs=144.0
Q ss_pred CCCeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeC
Q 007371 100 KDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDY 178 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 178 (606)
..+.+|.++.|.+..+|..+ .+.+|++|++.+|.+.++|.++ +.++.||.|++.-|.+..+|..|+.++.|++|++.+
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 66789999999999998888 9999999999999999999998 899999999999999999999999999999999999
Q ss_pred CCCCC---CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 179 CRLKD---IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 179 ~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
|.+.. |..+..+..|+.|+++.|.+.-+|..++++++|+.|.+.+|. +-.+|.+ ++.++.|++|++.+|.+...+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceeeecC
Confidence 99877 889999999999999999999999999999999999999965 5578988 999999999999999988777
Q ss_pred c
Q 007371 256 V 256 (606)
Q Consensus 256 ~ 256 (606)
+
T Consensus 190 p 190 (264)
T KOG0617|consen 190 P 190 (264)
T ss_pred h
Confidence 4
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=9.8e-14 Score=149.53 Aligned_cols=247 Identities=17% Similarity=0.130 Sum_probs=154.1
Q ss_pred HHHHhhhccCCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCC
Q 007371 91 EKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLIN 170 (606)
Q Consensus 91 ~~~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~ 170 (606)
-..|.+.....-..|+++.+.+..+|..+. ++|+.|.+.+|.+..+|. .+++|++|++++|.++.+|.. .++
T Consensus 192 ~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~s 263 (788)
T PRK15387 192 VQKMRACLNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPG 263 (788)
T ss_pred HHHHHHHhcCCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccc
Confidence 446666666777889999999988888653 478899988888888875 267899999999998888754 356
Q ss_pred CcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhC------------
Q 007371 171 LQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISK------------ 237 (606)
Q Consensus 171 L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~------------ 237 (606)
|+.|++++|.++. |.. ..+|+.|++++|+++.+|.. +++|+.|++++|.. ..+|.. ...
T Consensus 264 L~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l-p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 264 LLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL-PSELCKLWAYNNQLT 335 (788)
T ss_pred cceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC-cccccccccccCccc
Confidence 7777777777665 321 23455666666666655542 34566666665432 233321 100
Q ss_pred -----CCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCC
Q 007371 238 -----LSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDP 312 (606)
Q Consensus 238 -----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 312 (606)
..+|++|++++|.+...+. ...+|+.|+++.|.+..+|... .+|+.|++..+. .. .++.
T Consensus 336 ~LP~lp~~Lq~LdLS~N~Ls~LP~------------lp~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~-Lt-~LP~ 399 (788)
T PRK15387 336 SLPTLPSGLQELSVSDNQLASLPT------------LPSELYKLWAYNNRLTSLPALP--SGLKELIVSGNR-LT-SLPV 399 (788)
T ss_pred cccccccccceEecCCCccCCCCC------------CCcccceehhhccccccCcccc--cccceEEecCCc-cc-CCCC
Confidence 1245666666665544331 0134555666666666555432 457777763322 11 2221
Q ss_pred cccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 313 LLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 313 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
..++|+.|++++|.+.. ++. .+.+|+.|++.+|. ++.+|..+. .+++|+.|++++|+
T Consensus 400 ---l~s~L~~LdLS~N~Lss-IP~------l~~~L~~L~Ls~Nq-Lt~LP~sl~---~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 ---LPSELKELMVSGNRLTS-LPM------LPSGLLSLSVYRNQ-LTRLPESLI---HLSSETTVNLEGNP 456 (788)
T ss_pred ---cccCCCEEEccCCcCCC-CCc------chhhhhhhhhccCc-ccccChHHh---hccCCCeEECCCCC
Confidence 13567788888877643 321 12567788888754 456777665 78888889988886
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=5.9e-14 Score=152.14 Aligned_cols=276 Identities=14% Similarity=0.153 Sum_probs=203.8
Q ss_pred HhHHHHhhhhhcC--CCChhhHHHHHhhhccCCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCC
Q 007371 71 KEALQLFEKRMFN--IPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGL 148 (606)
Q Consensus 71 ~~~~~Lf~~~~~~--~~~~~~l~~~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L 148 (606)
..+|+=..+.+.. .+...+.-..|.+....+...|+++++.+..+|..+ .++++.|++++|.+..+|..++ .+|
T Consensus 147 ~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL 222 (754)
T PRK15370 147 ELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNI 222 (754)
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCC
Confidence 3455544443322 233334444567777788899999999998888754 2579999999999999998763 589
Q ss_pred cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCccc
Q 007371 149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLL 227 (606)
Q Consensus 149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 227 (606)
++|++++|.++.+|..+. .+|+.|++++|.+.. |..+. .+|++|++++|+++.+|..+. .+|+.|++++|. +
T Consensus 223 ~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-L 295 (754)
T PRK15370 223 KTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-I 295 (754)
T ss_pred CEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-c
Confidence 999999999999987664 479999999999888 66554 589999999999999998764 589999999975 4
Q ss_pred ccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCC
Q 007371 228 EVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESE 307 (606)
Q Consensus 228 ~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 307 (606)
..+|.. +. ++|+.|++++|.+...+. .+ .++|+.|++.+|.+..+|..+. ++|+.|++..+.. .
T Consensus 296 t~LP~~-lp--~sL~~L~Ls~N~Lt~LP~---------~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L-~ 359 (754)
T PRK15370 296 RTLPAH-LP--SGITHLNVQSNSLTALPE---------TL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQI-T 359 (754)
T ss_pred ccCccc-ch--hhHHHHHhcCCccccCCc---------cc--cccceeccccCCccccCChhhc-CcccEEECCCCCC-C
Confidence 567754 33 478999999998876542 12 2589999999999988887654 7899999854432 2
Q ss_pred CCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccC-CCCCCCCcEEEeecCC
Q 007371 308 DEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD-GEGFPRLKHLHVKSCS 383 (606)
Q Consensus 308 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~l~~L~~L~l~~c~ 383 (606)
.++..+ .+.|+.|++++|.+. .+ |..+. ..|+.|++++|. +..+|..+.. .+.++++..|.+.+++
T Consensus 360 -~LP~~l--p~~L~~LdLs~N~Lt-~L--P~~l~---~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 360 -VLPETL--PPTITTLDVSRNALT-NL--PENLP---AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -cCChhh--cCCcCEEECCCCcCC-CC--CHhHH---HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 233333 368999999998774 33 33332 578999999975 4466654431 2346889999999887
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=7.3e-14 Score=150.50 Aligned_cols=253 Identities=19% Similarity=0.148 Sum_probs=122.1
Q ss_pred CcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcc
Q 007371 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWL 226 (606)
Q Consensus 148 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 226 (606)
-.+|+++.+.++.+|..+. .+|+.|++.+|.++. |. .+++|++|++++|+++.+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~- 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP- 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCc-
Confidence 3455555555555555443 245555555555554 32 134555555555555555532 2345555555543
Q ss_pred cccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCC
Q 007371 227 LEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDES 306 (606)
Q Consensus 227 ~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 306 (606)
+..+|.. .++|+.|++++|.+...+. ..++|+.|++++|.+..+|.. ...|+.|.+..+. .
T Consensus 274 L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~------------~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~-L 334 (788)
T PRK15387 274 LTHLPAL----PSGLCKLWIFGNQLTSLPV------------LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQ-L 334 (788)
T ss_pred hhhhhhc----hhhcCEEECcCCccccccc------------cccccceeECCCCccccCCCC--cccccccccccCc-c
Confidence 2233321 1345555555555443321 123455555555555544431 1234444432111 1
Q ss_pred CCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCce
Q 007371 307 EDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEIL 386 (606)
Q Consensus 307 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~ 386 (606)
. .++. ...+|+.|+|++|.+.. ++. ..++|+.|++.+|. +..+|. ..++|+.|+++++. ++
T Consensus 335 ~-~LP~---lp~~Lq~LdLS~N~Ls~-LP~------lp~~L~~L~Ls~N~-L~~LP~------l~~~L~~LdLs~N~-Lt 395 (788)
T PRK15387 335 T-SLPT---LPSGLQELSVSDNQLAS-LPT------LPSELYKLWAYNNR-LTSLPA------LPSGLKELIVSGNR-LT 395 (788)
T ss_pred c-cccc---cccccceEecCCCccCC-CCC------CCcccceehhhccc-cccCcc------cccccceEEecCCc-cc
Confidence 1 1111 11356666666665532 221 12566667666653 334443 22467777776663 33
Q ss_pred EeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCccccc
Q 007371 387 HIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAI 466 (606)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~ 466 (606)
.+ +..+++|+. |++++. .+..+|.. +.+|+.|++++ ++++.+
T Consensus 396 ~L-----------P~l~s~L~~-----------------LdLS~N-~LssIP~l-------~~~L~~L~Ls~-NqLt~L- 437 (788)
T PRK15387 396 SL-----------PVLPSELKE-----------------LMVSGN-RLTSLPML-------PSGLLSLSVYR-NQLTRL- 437 (788)
T ss_pred CC-----------CCcccCCCE-----------------EEccCC-cCCCCCcc-------hhhhhhhhhcc-Cccccc-
Confidence 22 222344555 666664 24444321 24566677766 456666
Q ss_pred chhHHhhcCCCcEEEEecCC
Q 007371 467 PANLLRCLNNLVYLEVRNCD 486 (606)
Q Consensus 467 ~~~~~~~l~~L~~L~i~~c~ 486 (606)
|.. +.++++|+.|++++++
T Consensus 438 P~s-l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 438 PES-LIHLSSETTVNLEGNP 456 (788)
T ss_pred ChH-HhhccCCCeEECCCCC
Confidence 433 3566777777776654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=1.8e-13 Score=148.39 Aligned_cols=225 Identities=16% Similarity=0.194 Sum_probs=162.3
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
+.++.|++++|.+..+|.... .+|++|++++|.+..+|..+ ..+|+.|++++|.+..+|..+. .+|++|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 568899999999988887553 58999999999888888765 3478999999999988887764 47999999999
Q ss_pred CCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371 180 RLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG 258 (606)
Q Consensus 180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 258 (606)
.++. |..+. .+|++|++++|+++.+|..+. .+|++|++++|.. ..+|.. + .++|+.|++++|.+...+
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~-l--~~sL~~L~Ls~N~Lt~LP--- 341 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL-TALPET-L--PPGLKTLEAGENALTSLP--- 341 (754)
T ss_pred ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcc-ccCCcc-c--cccceeccccCCccccCC---
Confidence 8887 65554 489999999999988886553 4788888888654 456654 2 267888888888776544
Q ss_pred CCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccch
Q 007371 259 GSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEND 338 (606)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 338 (606)
..+. ++|+.|++++|.+..+|..+ .+.|+.|++..+... .++..+. ..|+.|++++|.+. .+ |.
T Consensus 342 ------~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt--~LP~~l~--~sL~~LdLs~N~L~-~L--P~ 405 (754)
T PRK15370 342 ------ASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNALT--NLPENLP--AALQIMQASRNNLV-RL--PE 405 (754)
T ss_pred ------hhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCC--CCCHhHH--HHHHHHhhccCCcc-cC--ch
Confidence 2222 57888888888888777654 367888888443321 3333332 36888888887764 32 22
Q ss_pred hHHH---hhccccceecccccC
Q 007371 339 GTKM---LLQRTEGLWLETLEG 357 (606)
Q Consensus 339 ~~~~---~l~~L~~L~l~~~~~ 357 (606)
.+.. .++++..|++.+|..
T Consensus 406 sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 406 SLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hHHHHhhcCCCccEEEeeCCCc
Confidence 2322 236777888887754
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=1.6e-14 Score=137.37 Aligned_cols=226 Identities=17% Similarity=0.161 Sum_probs=142.3
Q ss_pred CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeC-CcCccCCc-cccCCCCCcEEE
Q 007371 100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTR-IHFSSLPS-SLGCLINLQTLC 175 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L~ 175 (606)
+....+.+..|.++.+|... .+++||.|++++|.+..|.+..|..++.|..|-+.+ |.|+++|+ .|++|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 44567777788887777765 677888888888887777777777777777776666 67777665 567777777777
Q ss_pred eeCCCCCC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCc---------------------------
Q 007371 176 LDYCRLKD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCW--------------------------- 225 (606)
Q Consensus 176 l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~--------------------------- 225 (606)
+.-|.+.- ...+..+++|..|.+..|.+..++. .+..+..++++++..|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 77776655 3666777777777777776666655 45555555555443321
Q ss_pred ----------------------------------ccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCC
Q 007371 226 ----------------------------------LLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLT 271 (606)
Q Consensus 226 ----------------------------------~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 271 (606)
.....|...+++|++|++|++++|.+..+.. ..+..+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~--------~aFe~~a 298 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED--------GAFEGAA 298 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh--------hhhcchh
Confidence 1112233345666666666666666655544 5555666
Q ss_pred CCCEEEEeeCCCCCCCccccc--cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371 272 KLATLEIEVADAEILPPNFVS--VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL 334 (606)
Q Consensus 272 ~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 334 (606)
++++|.+..|+++.+...+.. ..|+.|++ .++......+..+.....|..++|-.|.+...-
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L-~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSL-YDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeee-cCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 666666666666555544432 56666666 334444444455556666666666666554443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=5.2e-13 Score=134.20 Aligned_cols=136 Identities=24% Similarity=0.237 Sum_probs=59.8
Q ss_pred cCCCCCcEEEeeCCcCcc-CCccccCCCC---CcEEEeeCCCCCC------CcccCCC-CCCCEeeecCCcCC-----cc
Q 007371 143 KGTEGLKVLNFTRIHFSS-LPSSLGCLIN---LQTLCLDYCRLKD------IAIVGQL-KKLEILILARSTIK-----QL 206 (606)
Q Consensus 143 ~~l~~L~~L~l~~~~l~~-lp~~~~~l~~---L~~L~l~~~~~~~------~~~i~~l-~~L~~L~l~~~~l~-----~l 206 (606)
..+++|+.|++++|.+.. .+..+..+.+ |++|++++|.+.+ ...+..+ ++|+.|++++|.++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 445555555555555542 2222322222 5555555555442 1233344 55555555555544 22
Q ss_pred cccccCCCCCCEEecCCCcccc----cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCC
Q 007371 207 PLEIGQLTRLQLLDLSNCWLLE----VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVAD 282 (606)
Q Consensus 207 p~~i~~L~~L~~L~l~~~~~~~----~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 282 (606)
+..+..+++|++|++++|...+ .++.. +..+++|++|++++|.+..... ......+..+++|++|++++|.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~----~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDEGA----SALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCccChHHH----HHHHHHhcccCCCCEEecCCCc
Confidence 3334444555555555544332 11222 3334455555555554432110 1112333444555555555544
Q ss_pred C
Q 007371 283 A 283 (606)
Q Consensus 283 ~ 283 (606)
+
T Consensus 233 l 233 (319)
T cd00116 233 L 233 (319)
T ss_pred C
Confidence 3
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=3.1e-12 Score=128.52 Aligned_cols=254 Identities=18% Similarity=0.105 Sum_probs=145.5
Q ss_pred cccccceeeccccccc-----ccchhHhcCCCCCcEEEeeCCcCcc-------CCccccCCCCCcEEEeeCCCCCC--Cc
Q 007371 120 QCPCLELLHTEGDGSM-----QVSDHFFKGTEGLKVLNFTRIHFSS-------LPSSLGCLINLQTLCLDYCRLKD--IA 185 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~l~~-------lp~~~~~l~~L~~L~l~~~~~~~--~~ 185 (606)
.+.+|+.+.+.++.+. .++.. +...+.++.++++++.+.. ++..+..+.+|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 4445666666665542 23332 3456667777777776552 33456667788888888887764 33
Q ss_pred ccCCCC---CCCEeeecCCcCC-----cccccccCC-CCCCEEecCCCcccc----cccHHHhhCCCCCCEEEccCCCCC
Q 007371 186 IVGQLK---KLEILILARSTIK-----QLPLEIGQL-TRLQLLDLSNCWLLE----VIAPNVISKLSQLEELYMGNSFSG 252 (606)
Q Consensus 186 ~i~~l~---~L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~~~----~~p~~~i~~l~~L~~L~l~~~~~~ 252 (606)
.+..+. +|++|++++|.+. .+...+..+ ++|+.|++++|...+ .++.. +..+++|++|++++|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCc
Confidence 343333 4888888888765 233445566 788888888876552 22223 566677888888887665
Q ss_pred CccccCCCccchHhhccCCCCCEEEEeeCCCCCCC-----cccc-ccCCcEEEEEeCCCCCCCCCCccc----CCCCCcE
Q 007371 253 WEKVEGGSNASLVELERLTKLATLEIEVADAEILP-----PNFV-SVELQRYRIRIGDESEDEFDPLLV----KSEAPRL 322 (606)
Q Consensus 253 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~-~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~ 322 (606)
.... ......+..+++|++|++++|.+.... ..+. .++|+.|++..+............ ..+.|+.
T Consensus 179 ~~~~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 179 DAGI----RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred hHHH----HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 3211 112244566678888888877764221 1121 267888877443322111111011 2367888
Q ss_pred EEecCccccc--ccccchhHHHhhccccceecccccCccc----ccccccCCCCC-CCCcEEEeecCC
Q 007371 323 MMLKGLEKVS--ILQENDGTKMLLQRTEGLWLETLEGVQS----VVHELDDGEGF-PRLKHLHVKSCS 383 (606)
Q Consensus 323 L~L~~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~l-~~L~~L~l~~c~ 383 (606)
|++.+|.+.. .......+. .+++|+++++++|..... +...+. .+ +.|++|++.+.+
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~-~~~~L~~l~l~~N~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 318 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLA-EKESLLELDLRGNKFGEEGAQLLAESLL---EPGNELESLWVKDDS 318 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHh-cCCCccEEECCCCCCcHHHHHHHHHHHh---hcCCchhhcccCCCC
Confidence 8888876641 111111122 236788888888765433 333332 45 688888887654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=1.2e-12 Score=124.79 Aligned_cols=144 Identities=19% Similarity=0.268 Sum_probs=116.5
Q ss_pred EEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeC-CCCC
Q 007371 105 ISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDY-CRLK 182 (606)
Q Consensus 105 L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~-~~~~ 182 (606)
.+-++-++..+|..... .-..+.+..|.+..+|+..|+.+++||.|||++|.|+. -|+.|..+..|-.|-+.+ |+|+
T Consensus 51 VdCr~~GL~eVP~~LP~-~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP-ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCCC-cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34444555666653311 33456699999999999999999999999999999999 788999999988888777 7899
Q ss_pred C-C-cccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCC
Q 007371 183 D-I-AIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSF 250 (606)
Q Consensus 183 ~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~ 250 (606)
+ | ..|++|..|+.|.+.-|++..++ ..+..+++|+.|.+.+| ....++.+.+..+..++++.+..+.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 9 5 78999999999999988888554 56889999999999984 4677777557888888988877665
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=1.4e-12 Score=129.95 Aligned_cols=179 Identities=23% Similarity=0.317 Sum_probs=160.8
Q ss_pred CCCeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeC
Q 007371 100 KDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDY 178 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 178 (606)
......+++.|.+..+|... .+..|..+.++.|.+..+|..+ .++..|.+|+|+.|+++.+|..++.|+ |+.|.+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 44567788999999999887 8889999999999999999887 789999999999999999999988776 99999999
Q ss_pred CCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371 179 CRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE 257 (606)
Q Consensus 179 ~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 257 (606)
|+++. |..++.+.+|..||.+.|.+..+|..++.+.+|+.|++..|. ...+|.+ +..| .|..|+++.|.+...+
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis~iP-- 227 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKISYLP-- 227 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCceeecc--
Confidence 99998 999999999999999999999999999999999999999855 5678887 6755 5999999999988776
Q ss_pred CCCccchHhhccCCCCCEEEEeeCCCCCCCccccc
Q 007371 258 GGSNASLVELERLTKLATLEIEVADAEILPPNFVS 292 (606)
Q Consensus 258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 292 (606)
..+.+|++|++|.+.+|.+..-|+.++.
T Consensus 228 -------v~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 228 -------VDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred -------hhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 7899999999999999999998888866
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.6e-10 Score=102.27 Aligned_cols=128 Identities=26% Similarity=0.305 Sum_probs=33.3
Q ss_pred CCCCCcEEEeeCCcCccCCcccc-CCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccc-cCCCCCCEEec
Q 007371 144 GTEGLKVLNFTRIHFSSLPSSLG-CLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEI-GQLTRLQLLDL 221 (606)
Q Consensus 144 ~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l 221 (606)
+..+++.|+|++|.|+.+. .++ .+.+|+.|++++|.++..+.+..+++|++|++++|.++.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3444555555555555442 233 34555555555555555444555555555555555555554333 23555555555
Q ss_pred CCCccc--ccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371 222 SNCWLL--EVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE 279 (606)
Q Consensus 222 ~~~~~~--~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 279 (606)
++|... +.+-. +..+++|++|++.+|++.... ......+..+++|+.||-.
T Consensus 96 ~~N~I~~l~~l~~--L~~l~~L~~L~L~~NPv~~~~-----~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEP--LSSLPKLRVLSLEGNPVCEKK-----NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGG--GGG-TT--EEE-TT-GGGGST-----THHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHH--HHcCCCcceeeccCCcccchh-----hHHHHHHHHcChhheeCCE
Confidence 554321 11111 455555555555555443221 1223344555555555543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=2.4e-11 Score=121.23 Aligned_cols=183 Identities=20% Similarity=0.243 Sum_probs=155.6
Q ss_pred EEEecCCCCcccCCcc---cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCC
Q 007371 104 AISLTYGGIQVLPERL---QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 104 ~L~l~~~~~~~l~~~~---~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 180 (606)
.|.|++-.++.+|... .+..-...+++.|.+..+|..+ ..+-.|..+.+.+|.+..+|..++++..|.+|+++.|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 4566666666666544 3444455668999999999886 67888999999999999999999999999999999999
Q ss_pred CCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 181 LKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 181 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
++. |..++.|+ |+.|-+++|+++.+|..++.+..|.+|+.+.|. ...+|.. ++.+.+|+.|.+..|+....+
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~~lp---- 205 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLEDLP---- 205 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhhhCC----
Confidence 998 88888775 999999999999999999999999999999865 6678877 999999999999999887776
Q ss_pred CccchHhhccCCCCCEEEEeeCCCCCCCccccc-cCCcEEEE
Q 007371 260 SNASLVELERLTKLATLEIEVADAEILPPNFVS-VELQRYRI 300 (606)
Q Consensus 260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l 300 (606)
.++..| .|.+|++++|++..+|..+.. ++|+.|.+
T Consensus 206 -----~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 206 -----EELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred -----HHHhCC-ceeeeecccCceeecchhhhhhhhheeeee
Confidence 677755 589999999999999988754 77777776
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=4e-10 Score=99.77 Aligned_cols=137 Identities=24% Similarity=0.238 Sum_probs=43.2
Q ss_pred CCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCC-ccc
Q 007371 109 YGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIV 187 (606)
Q Consensus 109 ~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~i 187 (606)
.+.+..++...+..+++.|++.++.+..+.. +-..+.+|++|++++|.++.++ .+..+++|++|++++|.++.. +.+
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp ------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 3444455555555566777777776666543 2124667777777777777664 466677777777777777763 333
Q ss_pred -CCCCCCCEeeecCCcCCccc--ccccCCCCCCEEecCCCcccccc--cHHHhhCCCCCCEEEcc
Q 007371 188 -GQLKKLEILILARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVI--APNVISKLSQLEELYMG 247 (606)
Q Consensus 188 -~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~--p~~~i~~l~~L~~L~l~ 247 (606)
..+++|++|++++|+|..+- ..+..+++|++|++.+|.....- -.-++..+++|+.||-.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 35677777777777666432 34566777777777776544321 12347788888888643
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.3e-10 Score=109.03 Aligned_cols=159 Identities=17% Similarity=0.149 Sum_probs=92.6
Q ss_pred cccccceeecccccccccch-hHhcCCCCCcEEEeeCCcCcc---CCccccCCCCCcEEEeeCCCCCCC---cccCCCCC
Q 007371 120 QCPCLELLHTEGDGSMQVSD-HFFKGTEGLKVLNFTRIHFSS---LPSSLGCLINLQTLCLDYCRLKDI---AIVGQLKK 192 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~---lp~~~~~l~~L~~L~l~~~~~~~~---~~i~~l~~ 192 (606)
++++||...+.++.....+. +....+++++.||+++|-+.. +-.....+++|+.|+++.|++..| ..-..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45556666666655554442 233566777777777765544 223345667777777777765442 12235666
Q ss_pred CCEeeecCCcCC--cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccC
Q 007371 193 LEILILARSTIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERL 270 (606)
Q Consensus 193 L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 270 (606)
|..|.++.|+++ .+-.....+++|..|++.+|......... ..-+..|+.|++++|.+...... ..++.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~-------~~~~~l 270 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQG-------YKVGTL 270 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccc-------cccccc
Confidence 777777777665 33334455677777777776322211111 34556677777777766555432 566777
Q ss_pred CCCCEEEEeeCCCCCC
Q 007371 271 TKLATLEIEVADAEIL 286 (606)
Q Consensus 271 ~~L~~L~l~~~~~~~~ 286 (606)
+.|+.|+++.+++.++
T Consensus 271 ~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASI 286 (505)
T ss_pred cchhhhhccccCcchh
Confidence 7777777777776543
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=5.9e-11 Score=114.30 Aligned_cols=292 Identities=15% Similarity=0.068 Sum_probs=141.8
Q ss_pred CcEEEeeCCCCCC--C--cccCCCCCCCEeeecCC-cCC--cccccccCCCCCCEEecCCCcccccccH-HHhhCCCCCC
Q 007371 171 LQTLCLDYCRLKD--I--AIVGQLKKLEILILARS-TIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAP-NVISKLSQLE 242 (606)
Q Consensus 171 L~~L~l~~~~~~~--~--~~i~~l~~L~~L~l~~~-~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~ 242 (606)
|+.|.++++.-.. + ....+++++++|++.+| +++ .+-.--..+++|++|++..|.......- .....+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 5566666665222 1 33446677777777777 344 1222234677888888877665443322 2345788888
Q ss_pred EEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcE
Q 007371 243 ELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRL 322 (606)
Q Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 322 (606)
++++++|..... ..+-.-.+..++++++...++.-....... ..-..+..+.+
T Consensus 220 ~lNlSwc~qi~~------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~---------------------~~~~~~~~i~~ 272 (483)
T KOG4341|consen 220 YLNLSWCPQISG------NGVQALQRGCKELEKLSLKGCLELELEALL---------------------KAAAYCLEILK 272 (483)
T ss_pred HhhhccCchhhc------CcchHHhccchhhhhhhhcccccccHHHHH---------------------HHhccChHhhc
Confidence 888888843211 112233444445555544443221111000 00011222333
Q ss_pred EEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEecccccccccccccc
Q 007371 323 MMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRW 402 (606)
Q Consensus 323 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 402 (606)
+++..|...+... -+.+...+..|+.|..++|...++.+-+-- ..+.++|+.|.+.+|..+..... ..+...
T Consensus 273 lnl~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL-g~~~~~L~~l~l~~c~~fsd~~f------t~l~rn 344 (483)
T KOG4341|consen 273 LNLQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWAL-GQHCHNLQVLELSGCQQFSDRGF------TMLGRN 344 (483)
T ss_pred cchhhhccccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHH-hcCCCceEEEeccccchhhhhhh------hhhhcC
Confidence 3333332222221 122333456778888888777665443221 34668888888888876554310 111344
Q ss_pred ccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccc---hhHHhhcCCCcE
Q 007371 403 EGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIP---ANLLRCLNNLVY 479 (606)
Q Consensus 403 ~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~ 479 (606)
.+.|+. +.+.+|....+-... ....+.+.|+.|.+++|..+++..- .....++..|+.
T Consensus 345 ~~~Le~-----------------l~~e~~~~~~d~tL~--sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~ 405 (483)
T KOG4341|consen 345 CPHLER-----------------LDLEECGLITDGTLA--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEV 405 (483)
T ss_pred Chhhhh-----------------hcccccceehhhhHh--hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccce
Confidence 555555 555555433221000 1123456666666666665555310 011123455666
Q ss_pred EEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccc
Q 007371 480 LEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRF 526 (606)
Q Consensus 480 L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 526 (606)
+.+.+|+.+++-... .+..+++|+.+++.+|.....-
T Consensus 406 lEL~n~p~i~d~~Le----------~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 406 LELDNCPLITDATLE----------HLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred eeecCCCCchHHHHH----------HHhhCcccceeeeechhhhhhh
Confidence 666666655442211 2234556666666666555443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.84 E-value=2.8e-09 Score=110.33 Aligned_cols=184 Identities=25% Similarity=0.313 Sum_probs=99.8
Q ss_pred EEecCCCC-cccCCcccccccceeecccccccccchhHhcCCC-CCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCC
Q 007371 105 ISLTYGGI-QVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTE-GLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLK 182 (606)
Q Consensus 105 L~l~~~~~-~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~ 182 (606)
+....+.+ .........+.++.|.+.++...+++... ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 44444444 33333334455666666666666665543 3332 566666666666666555666666666666666666
Q ss_pred C-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCc
Q 007371 183 D-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSN 261 (606)
Q Consensus 183 ~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 261 (606)
+ +...+.+.+|+.|+++++.+..+|..+..+..|++|.+.+|... ..+.. +.++.++..+.+.++.+...+
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~~~------ 248 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLEDLP------ 248 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceeeecc------
Confidence 5 44444666666666666666666655555555666666654322 22222 555566666655555443321
Q ss_pred cchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEE
Q 007371 262 ASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRI 300 (606)
Q Consensus 262 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 300 (606)
..++.+++++.|+++.|.+..++......+++.|++
T Consensus 249 ---~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~ 284 (394)
T COG4886 249 ---ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284 (394)
T ss_pred ---chhccccccceeccccccccccccccccCccCEEec
Confidence 445555556666666666655555222255555555
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=2.7e-09 Score=110.47 Aligned_cols=190 Identities=24% Similarity=0.236 Sum_probs=116.0
Q ss_pred eeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCC-CCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcC
Q 007371 126 LLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLI-NLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTI 203 (606)
Q Consensus 126 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l 203 (606)
.+....+........+ ..+..+..|++.++.+.++|.....+. +|+.|+++++.+.. |..++.+++|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 3455555442233332 345667777777777777777666664 77777777777766 46677777777777777777
Q ss_pred CcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCC
Q 007371 204 KQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADA 283 (606)
Q Consensus 204 ~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 283 (606)
..+|...+.+++|+.|++++|. ...+|.. ++.+..|++|.+++|.....+ ..++++.++..+.+..+..
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~~~~---------~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNSIIELL---------SSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCcceecc---------hhhhhcccccccccCCcee
Confidence 7777666677777777777743 5566654 455556777777776422222 4566666666666666666
Q ss_pred CCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccc
Q 007371 284 EILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEK 330 (606)
Q Consensus 284 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 330 (606)
..++..+.. ..++.|++........ ..+.....++.|+++++..
T Consensus 245 ~~~~~~~~~l~~l~~L~~s~n~i~~i---~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 245 EDLPESIGNLSNLETLDLSNNQISSI---SSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred eeccchhccccccceecccccccccc---ccccccCccCEEeccCccc
Confidence 554444433 4566666633222222 1156666777777777554
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=8e-10 Score=107.21 Aligned_cols=208 Identities=17% Similarity=0.126 Sum_probs=130.7
Q ss_pred cCCCCCcEEEeeCCcCccCC--ccccCCCCCcEEEeeCCCCCC----CcccCCCCCCCEeeecCCcCCccccc--ccCCC
Q 007371 143 KGTEGLKVLNFTRIHFSSLP--SSLGCLINLQTLCLDYCRLKD----IAIVGQLKKLEILILARSTIKQLPLE--IGQLT 214 (606)
Q Consensus 143 ~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~----~~~i~~l~~L~~L~l~~~~l~~lp~~--i~~L~ 214 (606)
+++++|+...+.++.+...+ .....|++++.|++++|-+.. ......|++|+.|+++.|.+...-.+ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 67889999999988877766 367889999999999987766 25667889999999998876633221 22567
Q ss_pred CCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccC
Q 007371 215 RLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVE 294 (606)
Q Consensus 215 ~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 294 (606)
.|+.|.+++|.....--..++..+++|+.|++..|....... ..-..+..|++|++++|.+-.++..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~--------~~~~i~~~L~~LdLs~N~li~~~~~----- 264 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA--------TSTKILQTLQELDLSNNNLIDFDQG----- 264 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec--------chhhhhhHHhhccccCCcccccccc-----
Confidence 788888888876654444546777888888888774222111 2334455677778877766544422
Q ss_pred CcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchh----HHHhhccccceecccccCcccccccccCCCC
Q 007371 295 LQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG----TKMLLQRTEGLWLETLEGVQSVVHELDDGEG 370 (606)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 370 (606)
...+.++.|+.|+++.+... ++..|+. ....|++|++|.+..|.. .+++. +..+..
T Consensus 265 -----------------~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~s-l~~l~~ 324 (505)
T KOG3207|consen 265 -----------------YKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRS-LNHLRT 324 (505)
T ss_pred -----------------cccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCcc-ccccc-cchhhc
Confidence 22355566666666665542 2222221 113467788888777654 12221 111335
Q ss_pred CCCCcEEEeecCC
Q 007371 371 FPRLKHLHVKSCS 383 (606)
Q Consensus 371 l~~L~~L~l~~c~ 383 (606)
+++|+.|.+..++
T Consensus 325 l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 325 LENLKHLRITLNY 337 (505)
T ss_pred cchhhhhhccccc
Confidence 6677777665443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=8.8e-10 Score=101.63 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=113.6
Q ss_pred CCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCC
Q 007371 144 GTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSN 223 (606)
Q Consensus 144 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 223 (606)
..+.|..+|+++|.|+.+-.++.-.+.+|.|++++|.+..+..+..+++|+.||+++|.++++-.+=.+|-+.+.|.+.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 35678899999999999888888889999999999998887778999999999999998887766666888999999998
Q ss_pred CcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371 224 CWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPN 289 (606)
Q Consensus 224 ~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 289 (606)
| .++.+.. ++++-+|..|++++|.+..... ...+++++-|+.+.+.+|.+..++..
T Consensus 362 N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~lde-------V~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 362 N-KIETLSG--LRKLYSLVNLDLSSNQIEELDE-------VNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred h-hHhhhhh--hHhhhhheeccccccchhhHHH-------hcccccccHHHHHhhcCCCccccchH
Confidence 5 4566554 7889999999999998765432 37789999999999999988766654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=1.8e-09 Score=99.59 Aligned_cols=128 Identities=26% Similarity=0.228 Sum_probs=59.6
Q ss_pred ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCC-cccCCCCCCCEeeecCC
Q 007371 123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILILARS 201 (606)
Q Consensus 123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~i~~l~~L~~L~l~~~ 201 (606)
.|+.+++++|.+..+.+++ .-.+.+|+|++++|.+..+-. +..+++|+.|++++|.++.. .-=.++-|.++|.+++|
T Consensus 285 ~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 4445555555555554443 444555555555555544322 44455555555555544441 11123344445555555
Q ss_pred cCCcccccccCCCCCCEEecCCCccccccc-HHHhhCCCCCCEEEccCCCCCCc
Q 007371 202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIA-PNVISKLSQLEELYMGNSFSGWE 254 (606)
Q Consensus 202 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~~i~~l~~L~~L~l~~~~~~~~ 254 (606)
.+..+ .++++|.+|..|++++|+. +.+. ...||+++.|+++.+.+|.+...
T Consensus 363 ~iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 363 KIETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hHhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcccc
Confidence 44444 3445555555555555432 1111 11155555555555555554443
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.9e-07 Score=101.32 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=79.6
Q ss_pred CCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEc
Q 007371 170 NLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM 246 (606)
Q Consensus 170 ~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l 246 (606)
.++.|+++++.+.+ |..++++++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 36778888888776 677888888888888888877 67778888888888888888777788877 788888888888
Q ss_pred cCCCCCCccccCCCccchHhhccC-CCCCEEEEeeCCC
Q 007371 247 GNSFSGWEKVEGGSNASLVELERL-TKLATLEIEVADA 283 (606)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 283 (606)
++|.+.+..+ ..++.+ .++..+++.+|..
T Consensus 498 s~N~l~g~iP--------~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVP--------AALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCC--------hHHhhccccCceEEecCCcc
Confidence 8887766555 455443 3566777776653
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.48 E-value=7.7e-09 Score=100.00 Aligned_cols=220 Identities=20% Similarity=0.220 Sum_probs=133.3
Q ss_pred ccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccc
Q 007371 314 LVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVR 393 (606)
Q Consensus 314 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 393 (606)
...+++++.|.+.+|.+.+.... ..+...+++|++|++..|..+++..-... ..++++|++|.+++|+.+..- +..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~-~sla~~C~~l~~l~L~~c~~iT~~~Lk~l-a~gC~kL~~lNlSwc~qi~~~--gv~ 235 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSL-LSLARYCRKLRHLNLHSCSSITDVSLKYL-AEGCRKLKYLNLSWCPQISGN--GVQ 235 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHH-HHHHHhcchhhhhhhcccchhHHHHHHHH-HHhhhhHHHhhhccCchhhcC--cch
Confidence 46788888888888775444332 34566788999999999888887543322 458999999999999987651 100
Q ss_pred cccccccccccccch-hhhhhhhh----h----hccccccceeccccccccccccCCCCCccccCCccEEEeccCCCccc
Q 007371 394 REEGELRRWEGNLNS-TIQKCYEE----M----IGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSS 464 (606)
Q Consensus 394 ~~~~~~~~~~~~L~~-~i~~~~~~----~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 464 (606)
.. ......+++ ..+.|-+. + .....+..+++.+|..+.+...-. .......|+.|..++|..+.+
T Consensus 236 ~~----~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~--i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 236 AL----QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL--IACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred HH----hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH--HhhhhhHhhhhcccCCCCCch
Confidence 00 222333444 22333211 0 112334556666666555432100 012346778888888888777
Q ss_pred ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEee
Q 007371 465 AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTI 544 (606)
Q Consensus 465 l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i 544 (606)
..-..+.++.++|+.|.+..|.++.+..... -..+.+.|+.+++.+|--..+-.. -.....+|.|+.+.+
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~---------l~rn~~~Le~l~~e~~~~~~d~tL-~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTM---------LGRNCPHLERLDLEECGLITDGTL-ASLSRNCPRLRVLSL 379 (483)
T ss_pred HHHHHHhcCCCceEEEeccccchhhhhhhhh---------hhcCChhhhhhcccccceehhhhH-hhhccCCchhccCCh
Confidence 6445566778888888888888776654322 124677888888888755443311 112345777888888
Q ss_pred ccCCCCccc
Q 007371 545 ENCPDMETF 553 (606)
Q Consensus 545 ~~Cp~L~~l 553 (606)
+.|...+..
T Consensus 380 shce~itD~ 388 (483)
T KOG4341|consen 380 SHCELITDE 388 (483)
T ss_pred hhhhhhhhh
Confidence 877655543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3.5e-07 Score=66.31 Aligned_cols=55 Identities=27% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371 147 GLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARS 201 (606)
Q Consensus 147 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~ 201 (606)
+|++|++++|.++.+|. .|.++++|++|++++|.+.. +..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444444444332 33444444444444444433 234444444444444444
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=9.9e-07 Score=95.87 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=83.2
Q ss_pred CCCEeeecCCcCC-cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccC
Q 007371 192 KLEILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERL 270 (606)
Q Consensus 192 ~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 270 (606)
.++.|+++++.+. .+|..++++++|+.|++++|...+.+|.. ++.+++|+.|++++|.+.+..+ ..++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP--------~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIP--------ESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCc--------hHHhcC
Confidence 4788899999887 78888999999999999998888889987 8999999999999998887665 788999
Q ss_pred CCCCEEEEeeCCCC-CCCccccc--cCCcEEEE
Q 007371 271 TKLATLEIEVADAE-ILPPNFVS--VELQRYRI 300 (606)
Q Consensus 271 ~~L~~L~l~~~~~~-~~~~~~~~--~~L~~L~l 300 (606)
++|+.|++++|.+. .+|..+.. .++..+++
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999998874 67776543 35556665
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=3.2e-07 Score=66.53 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=50.6
Q ss_pred cccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCC
Q 007371 122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 181 (606)
++|++|++++|.+..++.+.|..+++|++|++++|.++.++ ..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888888888888889999999999999988854 5778999999999998864
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.32 E-value=9.2e-08 Score=90.67 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=134.1
Q ss_pred HHhhhcc-CCCeEEEecCCCCc--ccCC---cc-cccccceeecccccccccchhH-------------hcCCCCCcEEE
Q 007371 93 KMEETIR-KDPIAISLTYGGIQ--VLPE---RL-QCPCLELLHTEGDGSMQVSDHF-------------FKGTEGLKVLN 152 (606)
Q Consensus 93 ~~~di~~-~~l~~L~l~~~~~~--~l~~---~~-~l~~L~~L~~~~~~~~~~~~~~-------------~~~l~~L~~L~ 152 (606)
...-++. ++++.++||.|.++ .++. .+ .+..|+.|.+.+|.++...... ...-+.||++.
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 3333333 58999999999982 2222 22 6889999999999876543322 24567899999
Q ss_pred eeCCcCcc-----CCccccCCCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcCC-----cccccccCCCCC
Q 007371 153 FTRIHFSS-----LPSSLGCLINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTIK-----QLPLEIGQLTRL 216 (606)
Q Consensus 153 l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L 216 (606)
...|.+.. +...+...+.|+.+.+..|.|.. . ..+..+++|++||+..|.++ .+-..+..+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 99998765 33456777899999999998765 2 56789999999999999766 344556678899
Q ss_pred CEEecCCCccccc----ccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 217 QLLDLSNCWLLEV----IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 217 ~~L~l~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
+.|++++|..... +....-...++|++|.+.+|.+..... ......+...+.|++|++.+|.+.
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~----~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA----LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH----HHHHHHHhcchhhHHhcCCccccc
Confidence 9999999865432 223323457899999999987654321 223345566889999999998873
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=9e-09 Score=105.94 Aligned_cols=129 Identities=24% Similarity=0.238 Sum_probs=96.4
Q ss_pred CCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCC
Q 007371 145 TEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSN 223 (606)
Q Consensus 145 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~ 223 (606)
...|.+.++++|.+..+-.++.-+++|+.|+|++|++.+...+..+++|.+||+++|.+..+|.- ...+ +|+.|.+++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 34567778888888777777778888999999999888877888889999999999988888752 3333 388888888
Q ss_pred CcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 224 CWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 224 ~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
|. +..+-. |.+|++|+.|++++|-+..... +.-+..+..|+.|.+.+|.+-
T Consensus 242 N~-l~tL~g--ie~LksL~~LDlsyNll~~hse-------L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NA-LTTLRG--IENLKSLYGLDLSYNLLSEHSE-------LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cH-HHhhhh--HHhhhhhhccchhHhhhhcchh-------hhHHHHHHHHHHHhhcCCccc
Confidence 65 444443 7888899999988887654432 355666677888888887653
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.5e-08 Score=92.24 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=44.6
Q ss_pred ccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 314 LVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 314 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
...|+++..|+|++|..... ..-. ...-|+.|++|.++.|..+. |..+-.++..|+|.+|++.+|-
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~-~~~~-~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKN-DCFQ-EFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhCCceeeeccccccccCc-hHHH-HHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 35688888888888655433 1111 12236889999999887653 3333336689999999999885
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=2e-06 Score=85.79 Aligned_cols=134 Identities=16% Similarity=0.270 Sum_probs=78.9
Q ss_pred hccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEecccccccccccccc-ccccchhhhhhhhhhhcccc
Q 007371 344 LQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRW-EGNLNSTIQKCYEEMIGFRD 422 (606)
Q Consensus 344 l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~-~~~L~~~i~~~~~~~~~~~~ 422 (606)
+++++.|++++| .++.+|. +. ++|++|.+++|..++.+ ++. .++|+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~-LP-----~sLtsL~Lsnc~nLtsL-----------P~~LP~nLe~-------------- 98 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV-LP-----NELTEITIENCNNLTTL-----------PGSIPEGLEK-------------- 98 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC-CC-----CCCcEEEccCCCCcccC-----------Cchhhhhhhh--------------
Confidence 377888888887 6666663 32 46888888888877655 222 246666
Q ss_pred ccceeccccccccccccCCCCCccccCCccEEEecc--CCCcccccchhHHhhcCCCcEEEEecCCCcceeecccccccc
Q 007371 423 IIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDD--CTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINA 500 (606)
Q Consensus 423 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~--C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~ 500 (606)
|.+.+|.++..+| ++|+.|.+.. |..+..+ | ++|++|.+.++........
T Consensus 99 ---L~Ls~Cs~L~sLP----------~sLe~L~L~~n~~~~L~~L-P-------ssLk~L~I~~~n~~~~~~l------- 150 (426)
T PRK15386 99 ---LTVCHCPEISGLP----------ESVRSLEIKGSATDSIKNV-P-------NGLTSLSINSYNPENQARI------- 150 (426)
T ss_pred ---eEccCcccccccc----------cccceEEeCCCCCcccccC-c-------chHhheecccccccccccc-------
Confidence 8888887766543 3566666653 3334444 2 3566777654321111100
Q ss_pred ccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccC
Q 007371 501 DKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENC 547 (606)
Q Consensus 501 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C 547 (606)
.....++|+.|.+.+|..+. +|. ..+.+|+.|.+..+
T Consensus 151 ----p~~LPsSLk~L~Is~c~~i~-LP~-----~LP~SLk~L~ls~n 187 (426)
T PRK15386 151 ----DNLISPSLKTLSLTGCSNII-LPE-----KLPESLQSITLHIE 187 (426)
T ss_pred ----ccccCCcccEEEecCCCccc-Ccc-----cccccCcEEEeccc
Confidence 00123678888888887553 222 12468888888665
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.6e-08 Score=93.44 Aligned_cols=89 Identities=20% Similarity=0.166 Sum_probs=54.9
Q ss_pred CCccEEEeccCCCcccc-cchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecccccccccc
Q 007371 449 NNLFDLVVDDCTNMSSA-IPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFC 527 (606)
Q Consensus 449 ~~L~~L~i~~C~~L~~l-~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 527 (606)
++|+.|+|++|.+--.. -...+...+|+|.+|++++|..++.--. ..+..|+.|++|.++.|=.+----
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~----------~~~~kf~~L~~lSlsRCY~i~p~~ 355 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF----------QEFFKFNYLQHLSLSRCYDIIPET 355 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH----------HHHHhcchheeeehhhhcCCChHH
Confidence 56777777777532111 1123456788888888888887765111 124568888888888885432110
Q ss_pred ccccccccCCCcceEeeccCCC
Q 007371 528 NFTRNIIELPKLRYLTIENCPD 549 (606)
Q Consensus 528 ~~~~~~~~~~~L~~L~i~~Cp~ 549 (606)
-......|+|.+|++.||-.
T Consensus 356 --~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 356 --LLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred --eeeeccCcceEEEEeccccC
Confidence 02355678888888888853
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=2e-07 Score=96.66 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=36.7
Q ss_pred cCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecC
Q 007371 143 KGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLS 222 (606)
Q Consensus 143 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 222 (606)
..+++|.+|++.+|.+..+...+..+.+|++|++++|.|+....+..+..|+.|++++|.++.+. ++..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 33444444444444444443334444444444444444444444444444444444444444332 23334444444444
Q ss_pred CC
Q 007371 223 NC 224 (606)
Q Consensus 223 ~~ 224 (606)
+|
T Consensus 171 ~n 172 (414)
T KOG0531|consen 171 YN 172 (414)
T ss_pred cc
Confidence 43
No 47
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.22 E-value=8.5e-08 Score=94.66 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=51.4
Q ss_pred hhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCc-cccccCCCCChHhHHHHhhhhhcC
Q 007371 5 GLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSC-QKNFPIDALPRKEALQLFEKRMFN 83 (606)
Q Consensus 5 ~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~ 83 (606)
....+.||||+..+|+.+..+++. +..||+||||||+..| +..+.. ...+++++|+.+++++||.+.++.
T Consensus 102 ~~LlVlDdv~~~~~~~~l~~~~~~--------~~~~~kilvTTR~~~v-~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 102 RCLLVLDDVWDEEDLEELREPLPS--------FSSGSKILVTTRDRSV-AGSLGGTDKVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp SEEEEEEEE-SHHHH-------HC--------HHSS-EEEEEESCGGG-GTTHHSCEEEEECSS--HHHHHHHHHHHHTS
T ss_pred cceeeeeeeccccccccccccccc--------cccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 556788999999999999988887 7789999999999999 455443 788999999999999999999874
Q ss_pred C
Q 007371 84 I 84 (606)
Q Consensus 84 ~ 84 (606)
.
T Consensus 173 ~ 173 (287)
T PF00931_consen 173 K 173 (287)
T ss_dssp H
T ss_pred c
Confidence 3
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=7.1e-07 Score=96.66 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=104.7
Q ss_pred CCCeEEEecCCCC--cccCCcc--cccccceeeccccccccc-chhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEE
Q 007371 100 KDPIAISLTYGGI--QVLPERL--QCPCLELLHTEGDGSMQV-SDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTL 174 (606)
Q Consensus 100 ~~l~~L~l~~~~~--~~l~~~~--~l~~L~~L~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 174 (606)
.++++|++++... ...+... .+|.|++|.+.+-....- -..++.++++|+.||+++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 8899999998665 3333333 789999999776543211 234467899999999999999888 678999999999
Q ss_pred EeeCCCCCC---CcccCCCCCCCEeeecCCcCCcccc-------cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEE
Q 007371 175 CLDYCRLKD---IAIVGQLKKLEILILARSTIKQLPL-------EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEEL 244 (606)
Q Consensus 175 ~l~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~-------~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L 244 (606)
.+.+-.+.. ...+.+|++|++||+|......-+. .-..|++||.||.++....+.+-+..+..-++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 998887765 4778889999999999874443221 123488888888887555555544445555566655
Q ss_pred Ecc
Q 007371 245 YMG 247 (606)
Q Consensus 245 ~l~ 247 (606)
.+-
T Consensus 281 ~~~ 283 (699)
T KOG3665|consen 281 AAL 283 (699)
T ss_pred hhh
Confidence 433
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=1.9e-07 Score=88.58 Aligned_cols=149 Identities=17% Similarity=0.045 Sum_probs=70.9
Q ss_pred cCCCCCCEEecCCCccccccc----HHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCC
Q 007371 211 GQLTRLQLLDLSNCWLLEVIA----PNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEIL 286 (606)
Q Consensus 211 ~~L~~L~~L~l~~~~~~~~~p----~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 286 (606)
.+-++||++....|. ++.-+ ...+...+.|+.+.+..|.+.... .......+..+++|+.|++..|-++.-
T Consensus 154 ~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG----~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEG----VTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred CCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCch----hHHHHHHHHhCCcceeeecccchhhhH
Confidence 344556666555533 22211 112445556666666655443221 123345566666666666666654311
Q ss_pred CccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccc--ccccchhHHHhhccccceecccccCccccccc
Q 007371 287 PPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVS--ILQENDGTKMLLQRTEGLWLETLEGVQSVVHE 364 (606)
Q Consensus 287 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 364 (606)
.... +...++.+++|+.+++++|.... .......+....|+|+.|.+.+|....+-...
T Consensus 229 gs~~-------------------LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 229 GSVA-------------------LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred HHHH-------------------HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 1100 00112233344555555543322 22223333344577777877777654432111
Q ss_pred cc-CCCCCCCCcEEEeecCC
Q 007371 365 LD-DGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 365 l~-~~~~l~~L~~L~l~~c~ 383 (606)
+. +....|.|+.|.+.+|.
T Consensus 290 la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhcchhhHHhcCCccc
Confidence 10 12357888888888886
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=2.7e-07 Score=95.74 Aligned_cols=173 Identities=21% Similarity=0.196 Sum_probs=119.6
Q ss_pred CCCeEEEecCCCCcccCC-cccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeC
Q 007371 100 KDPIAISLTYGGIQVLPE-RLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDY 178 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 178 (606)
..+..+++..|.+..+.. ...+.++..|++.+|.+..+...+ ..+.+|++|++++|.|+.+. .+..+..|+.|++.+
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccch-hhhhcchheecccccccccc-chhhccchhhheecc
Confidence 445556677777766444 337788888888888887776643 67899999999999988863 467788899999999
Q ss_pred CCCCCCcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371 179 CRLKDIAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE 257 (606)
Q Consensus 179 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 257 (606)
|.++.+..+..+.+|+.+++++|.+..+... ...+.+++.+.+.+|... .+.. +..+..+..+++..+.+...
T Consensus 150 N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~--~~~~~~l~~~~l~~n~i~~~--- 223 (414)
T KOG0531|consen 150 NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEG--LDLLKKLVLLSLLDNKISKL--- 223 (414)
T ss_pred CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccc--hHHHHHHHHhhcccccceec---
Confidence 9988877777799999999999988877553 578888888888885432 2221 33444444445555554332
Q ss_pred CCCccchHhhccCC--CCCEEEEeeCCCCCCC
Q 007371 258 GGSNASLVELERLT--KLATLEIEVADAEILP 287 (606)
Q Consensus 258 ~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~ 287 (606)
..+..+. +|+.+++.++++..++
T Consensus 224 -------~~l~~~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 224 -------EGLNELVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred -------cCcccchhHHHHHHhcccCcccccc
Confidence 2222222 2777777777776553
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=2.5e-06 Score=92.46 Aligned_cols=137 Identities=19% Similarity=0.205 Sum_probs=90.1
Q ss_pred CCCCcEEEeeCCcC-cc-CCcccc-CCCCCcEEEeeCCCCCC---CcccCCCCCCCEeeecCCcCCcccccccCCCCCCE
Q 007371 145 TEGLKVLNFTRIHF-SS-LPSSLG-CLINLQTLCLDYCRLKD---IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQL 218 (606)
Q Consensus 145 l~~L~~L~l~~~~l-~~-lp~~~~-~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 218 (606)
-.+|+.|+++|... .. .|..++ .++.|+.|.+.+-.+.. -....+++||+.||+++++++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 45678888888643 22 555554 46788888888876544 24455788888888888888877 78888888888
Q ss_pred EecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 219 LDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 219 L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
|.+.+-.....-.-..+-+|++|+.||+|......... -....++.-..+++||.|+.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~--ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK--IIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH--HHHHHHHhcccCccccEEecCCcchh
Confidence 88876443321111127788888888888765443321 11122334455788888888876653
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=1.8e-05 Score=79.11 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=40.2
Q ss_pred CCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEe
Q 007371 316 KSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHI 388 (606)
Q Consensus 316 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~ 388 (606)
.+.+++.|++++|.+ ..++. ..++|++|.+.+|..++.+|..+. ++|++|.+++|..+..+
T Consensus 50 ~~~~l~~L~Is~c~L-~sLP~------LP~sLtsL~Lsnc~nLtsLP~~LP-----~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 50 EARASGRLYIKDCDI-ESLPV------LPNELTEITIENCNNLTTLPGSIP-----EGLEKLTVCHCPEISGL 110 (426)
T ss_pred HhcCCCEEEeCCCCC-cccCC------CCCCCcEEEccCCCCcccCCchhh-----hhhhheEccCccccccc
Confidence 356677777777643 33321 235788888888888777775442 58888888888766543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.9e-06 Score=53.92 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=15.9
Q ss_pred CCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCC
Q 007371 147 GLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLK 182 (606)
Q Consensus 147 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~ 182 (606)
+|++|++++|.++++|..+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 344455555544444444444444444444444433
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.85 E-value=3.6e-07 Score=94.46 Aligned_cols=123 Identities=24% Similarity=0.254 Sum_probs=90.7
Q ss_pred eecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCCcCC
Q 007371 127 LHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARSTIK 204 (606)
Q Consensus 127 L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~ 204 (606)
.++++|....+..++ .-++.|+.|+|++|++++.- .+..|.+|++||+++|.+.. | -....+. |+.|++++|.++
T Consensus 169 a~fsyN~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT 245 (1096)
T ss_pred hhcchhhHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH
Confidence 334444444444443 56788999999999998864 67889999999999999887 4 2223333 999999999888
Q ss_pred cccccccCCCCCCEEecCCCcccc--cccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 205 QLPLEIGQLTRLQLLDLSNCWLLE--VIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 205 ~lp~~i~~L~~L~~L~l~~~~~~~--~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
.+ .+|.+|.+|+.|++++|-..+ .+.+ ++.|..|+.|++.+|.+-..+
T Consensus 246 tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 246 TL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCccccCH
Confidence 87 578999999999999864433 2222 678888999999998765443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2.3e-05 Score=51.98 Aligned_cols=33 Identities=42% Similarity=0.578 Sum_probs=16.9
Q ss_pred CCCEeeecCCcCCcccccccCCCCCCEEecCCC
Q 007371 192 KLEILILARSTIKQLPLEIGQLTRLQLLDLSNC 224 (606)
Q Consensus 192 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 224 (606)
+|++|++++|+++.+|+.+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555555555555555555554
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=4.1e-06 Score=77.84 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=58.9
Q ss_pred hcCCCCCcEEEeeCCcCcc---CCccccCCCCCcEEEeeCCCCCC-Cccc-CCCCCCCEeeecCCcCC--cccccccCCC
Q 007371 142 FKGTEGLKVLNFTRIHFSS---LPSSLGCLINLQTLCLDYCRLKD-IAIV-GQLKKLEILILARSTIK--QLPLEIGQLT 214 (606)
Q Consensus 142 ~~~l~~L~~L~l~~~~l~~---lp~~~~~l~~L~~L~l~~~~~~~-~~~i-~~l~~L~~L~l~~~~l~--~lp~~i~~L~ 214 (606)
.+...+++.+||.+|.|++ +...+.++++|++|+++.|++.. +.+. ..+.+|++|-+.++.+. .....+..++
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 4567788888888888776 33445778888888888888766 4444 46678888888877544 4445566677
Q ss_pred CCCEEecCCCc
Q 007371 215 RLQLLDLSNCW 225 (606)
Q Consensus 215 ~L~~L~l~~~~ 225 (606)
+++.|+++.|+
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 77777776653
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=1.9e-06 Score=70.75 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=43.4
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTI 203 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l 203 (606)
...++++|.+.++|..+-.+++....|++++|.++++|..+..++.||.|+++.|.+.. |..+..|.+|-+|+..++.+
T Consensus 56 ~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 56 TKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred EEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 33344444444555444444445555555555555555555555555555555555544 54455555555555555544
Q ss_pred Cccc
Q 007371 204 KQLP 207 (606)
Q Consensus 204 ~~lp 207 (606)
..+|
T Consensus 136 ~eid 139 (177)
T KOG4579|consen 136 AEID 139 (177)
T ss_pred ccCc
Confidence 4444
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=8.4e-05 Score=65.56 Aligned_cols=80 Identities=21% Similarity=0.124 Sum_probs=35.3
Q ss_pred CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC--ccccCCCCCcEEEeeCC
Q 007371 102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP--SSLGCLINLQTLCLDYC 179 (606)
Q Consensus 102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~ 179 (606)
...++++.|.+..++....++.|.+|.+++|.+..+.+.+-.-+++|..|.+.+|++..+- ..+..++.|++|.+-+|
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 3344455555544444334444455555555444444444333444455555554443321 12233444444444444
Q ss_pred CC
Q 007371 180 RL 181 (606)
Q Consensus 180 ~~ 181 (606)
.+
T Consensus 124 pv 125 (233)
T KOG1644|consen 124 PV 125 (233)
T ss_pred ch
Confidence 43
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=2.2e-05 Score=73.20 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=21.1
Q ss_pred cCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCccee
Q 007371 448 FNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEV 491 (606)
Q Consensus 448 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l 491 (606)
+|.+--|.+.. .++.++....-+..+|+|..|.+.+.|-...+
T Consensus 223 ~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 223 FPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 34444444443 34444433334455666666666665544433
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00037 Score=61.59 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=57.7
Q ss_pred ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccC-CCCCcEEEeeCCCCCC---CcccCCCCCCCEeee
Q 007371 123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGC-LINLQTLCLDYCRLKD---IAIVGQLKKLEILIL 198 (606)
Q Consensus 123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~-l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l 198 (606)
....+++.+|.+..++. |..++.|..|.+..|.|+.+-..+.. +++|..|.+.+|++.. ...+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44455566666655554 56667777777777777665444433 3456777777666544 455556666666666
Q ss_pred cCCcCCccc----ccccCCCCCCEEecCC
Q 007371 199 ARSTIKQLP----LEIGQLTRLQLLDLSN 223 (606)
Q Consensus 199 ~~~~l~~lp----~~i~~L~~L~~L~l~~ 223 (606)
-+|.++.-. ..+.++++|+.|++..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 666555332 1345555566655544
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.33 E-value=2.8e-05 Score=64.05 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371 100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD 177 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 177 (606)
..+...++++|.++++|... ..+.+++|++.+|.+.++|.+ +..++.||.|+++.|.+...|..+..+.++-+|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 66888999999999999876 677999999999999999999 588999999999999999999999999999999999
Q ss_pred CCCCCC
Q 007371 178 YCRLKD 183 (606)
Q Consensus 178 ~~~~~~ 183 (606)
++....
T Consensus 132 ~na~~e 137 (177)
T KOG4579|consen 132 ENARAE 137 (177)
T ss_pred CCcccc
Confidence 987665
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=0.00011 Score=78.39 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=17.7
Q ss_pred ccceEeeccccccccccccccccccCCCcc-eEeeccCCCC
Q 007371 511 KLFKLRLTDLPKLKRFCNFTRNIIELPKLR-YLTIENCPDM 550 (606)
Q Consensus 511 ~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~-~L~i~~Cp~L 550 (606)
.+..+.+.+|++++.+.. .... ..... .+.+.+||.|
T Consensus 352 ~~~~~~~~~~~~l~~~~l--~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSL--SYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred hHhHHHHhcCCCcchhhh--hhhh-ccCcchHHHhcCCccc
Confidence 455555666666655533 1111 22222 3555666666
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=4.6e-05 Score=70.40 Aligned_cols=100 Identities=24% Similarity=0.199 Sum_probs=52.1
Q ss_pred ccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecC
Q 007371 121 CPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILAR 200 (606)
Q Consensus 121 l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~ 200 (606)
+.+++.|++.++.+.++.- ..+++.|++|.|+-|.|+.+ ..+.++++|+.|+|..
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL-----------------------~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSL-----------------------APLQRCTRLKELYLRK 72 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccc-----------------------hhHHHHHHHHHHHHHh
Confidence 3455556666665555532 45566666666666655553 3334444444444444
Q ss_pred CcCCccc--ccccCCCCCCEEecCCCcccccccH----HHhhCCCCCCEEE
Q 007371 201 STIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAP----NVISKLSQLEELY 245 (606)
Q Consensus 201 ~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~~i~~l~~L~~L~ 245 (606)
|.|..+- ..+.++++|+.|.+..|...+.-+. .++.-|++|++|+
T Consensus 73 N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 73 NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4444332 2345566666666666554444332 2355666666665
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=5.1e-05 Score=70.11 Aligned_cols=107 Identities=27% Similarity=0.306 Sum_probs=79.9
Q ss_pred CCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCccccccc-HHHhhCCCCCCEEEc
Q 007371 168 LINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIA-PNVISKLSQLEELYM 246 (606)
Q Consensus 168 l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~~i~~l~~L~~L~l 246 (606)
+.+.+.|+..||.+.++....+|+.|++|.|+-|+|+.+ ..+..+++|++|++..|. +..+. -..+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 556788899999998888888999999999999999988 457899999999999864 33333 234788999999998
Q ss_pred cCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371 247 GNSFSGWEKVEGGSNASLVELERLTKLATLEIE 279 (606)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 279 (606)
..|.=.+... .......++-|++|++|+=.
T Consensus 96 ~ENPCc~~ag---~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 96 DENPCCGEAG---QNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred ccCCcccccc---hhHHHHHHHHcccchhccCc
Confidence 8875433222 12233556777788877643
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00015 Score=77.22 Aligned_cols=175 Identities=20% Similarity=0.208 Sum_probs=112.5
Q ss_pred hhccccceecccccCccc--ccccccCCCCCCCCcEEEeecC-CCceEeccccccccccccccccccchhhhhhhhhhhc
Q 007371 343 LLQRTEGLWLETLEGVQS--VVHELDDGEGFPRLKHLHVKSC-SEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIG 419 (606)
Q Consensus 343 ~l~~L~~L~l~~~~~~~~--~~~~l~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~ 419 (606)
..++|+.|.+.+|..... +.... ...++|+.|++.+| .......... .......++|+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~L~~----------- 247 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALA---LKCPNLEELDLSGCCLLITLSPLLL----LLLLSICRKLKS----------- 247 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHH---hhCchhheecccCcccccccchhHh----hhhhhhcCCcCc-----------
Confidence 368999999999988876 32323 37899999999984 3222211000 000223345555
Q ss_pred cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccc
Q 007371 420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELIN 499 (606)
Q Consensus 420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~ 499 (606)
|.+..|..+.+..... -...+++|+.|.+.+|..+++..-......+++|++|+++.|..+.+-...
T Consensus 248 ------l~l~~~~~isd~~l~~--l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~----- 314 (482)
T KOG1947|consen 248 ------LDLSGCGLVTDIGLSA--LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE----- 314 (482)
T ss_pred ------cchhhhhccCchhHHH--HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH-----
Confidence 9888887655432211 112368999999999998887755667788999999999999987442111
Q ss_pred cccCCCCCCCCccceEeecccc---ccccccccccccccC--CCcceEeeccCCCCcccc
Q 007371 500 ADKEHIGPLFPKLFKLRLTDLP---KLKRFCNFTRNIIEL--PKLRYLTIENCPDMETFI 554 (606)
Q Consensus 500 ~~~~~~~~~~~~L~~L~l~~c~---~L~~l~~~~~~~~~~--~~L~~L~i~~Cp~L~~l~ 554 (606)
.....+|+|+.|.+..++ .++.... ...... -.+..+.+.+||+++.+-
T Consensus 315 ----~~~~~c~~l~~l~~~~~~~c~~l~~~~l--~~~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 315 ----ALLKNCPNLRELKLLSLNGCPSLTDLSL--SGLLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred ----HHHHhCcchhhhhhhhcCCCccHHHHHH--HHhhccCchhHhHHHHhcCCCcchhh
Confidence 113357777776665554 4666543 112222 278889999999998864
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.59 E-value=0.0035 Score=58.12 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=24.3
Q ss_pred cCCCCCcEEEeeCCcCcc-----CCccccCCCCCcEEEeeCC
Q 007371 143 KGTEGLKVLNFTRIHFSS-----LPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 143 ~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~ 179 (606)
..+..+..++|++|.|.. +...+.+-.+|+..+++.-
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ 68 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA 68 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence 347777888888887753 4445556666777666654
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.56 E-value=0.0011 Score=61.24 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=54.7
Q ss_pred CCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcC---C-ccc-------ccccCCCCCCEEecCCCcccccc
Q 007371 168 LINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTI---K-QLP-------LEIGQLTRLQLLDLSNCWLLEVI 230 (606)
Q Consensus 168 l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l---~-~lp-------~~i~~L~~L~~L~l~~~~~~~~~ 230 (606)
+..+..+++++|.|.. . ..|.+-.+|+..+++.-.. . .+| +.+-++++|+..++++|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4445555555555443 1 3344445555555543211 1 222 22345555555555555544444
Q ss_pred cHH---HhhCCCCCCEEEccCCCCCCccccCCCc------cchHhhccCCCCCEEEEeeCCCCCCCc
Q 007371 231 APN---VISKLSQLEELYMGNSFSGWEKVEGGSN------ASLVELERLTKLATLEIEVADAEILPP 288 (606)
Q Consensus 231 p~~---~i~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~ 288 (606)
|+. .|.+-+.|.+|.+++|.......+ ..+ +......+-+.|+...+..|++...+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~-rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGG-RIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchh-HHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 332 234445566666555544322110 000 111233455666666666666655443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.53 E-value=0.00092 Score=61.77 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=54.6
Q ss_pred CCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC--CCCC--CcccCCCCCCCEeeecCCcCCcc--cccccCCCCCCE
Q 007371 145 TEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC--RLKD--IAIVGQLKKLEILILARSTIKQL--PLEIGQLTRLQL 218 (606)
Q Consensus 145 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~--~~~~--~~~i~~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~ 218 (606)
+..|..|++.+..++.+ ..+-.|++|++|.++.| .+.. +....++++|++|++++|+++.+ -..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 34444444444433332 12334566666666666 3333 23334457777777777765521 123456666777
Q ss_pred EecCCCccccc--ccHHHhhCCCCCCEEEccCC
Q 007371 219 LDLSNCWLLEV--IAPNVISKLSQLEELYMGNS 249 (606)
Q Consensus 219 L~l~~~~~~~~--~p~~~i~~l~~L~~L~l~~~ 249 (606)
|++.+|..... --..++.-+++|.+|+-...
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 77777654331 11233566778887765443
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00059 Score=60.44 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=64.7
Q ss_pred ccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccc
Q 007371 451 LFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFT 530 (606)
Q Consensus 451 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 530 (606)
++.++-++| .+... ....+.++++++.|.+.+|..+.++.-.. ..+.+|+|+.|+|++||++++-..
T Consensus 103 IeaVDAsds-~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~---------l~~~~~~L~~L~lsgC~rIT~~GL-- 169 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLER---------LGGLAPSLQDLDLSGCPRITDGGL-- 169 (221)
T ss_pred EEEEecCCc-hHHHH-HHHHHhccchhhhheeccccchhhHHHHH---------hcccccchheeeccCCCeechhHH--
Confidence 455666664 34444 33446778889999999999888754321 123689999999999999988754
Q ss_pred cccccCCCcceEeeccCCCCccc
Q 007371 531 RNIIELPKLRYLTIENCPDMETF 553 (606)
Q Consensus 531 ~~~~~~~~L~~L~i~~Cp~L~~l 553 (606)
.++..+++|+.|.|.+.|....+
T Consensus 170 ~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HHHHHhhhhHHHHhcCchhhhch
Confidence 56778899999999888765544
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.0011 Score=58.72 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=49.8
Q ss_pred cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcc
Q 007371 420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLE 489 (606)
Q Consensus 420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~ 489 (606)
+++++.|.+.+|..+.+|..+. .. +-.++|+.|+|++|+++++- ...++.++++|+.|.+.+.+.+.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~-l~-~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLER-LG-GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred cchhhhheeccccchhhHHHHH-hc-ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 4445558999999988886555 22 25688999999999999887 55567788888888888765443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0039 Score=57.76 Aligned_cols=115 Identities=22% Similarity=0.220 Sum_probs=71.5
Q ss_pred cCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCC--cCC-cccccccCCCCCCEEecCCCcc--cccccHHHhhCCCC
Q 007371 166 GCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARS--TIK-QLPLEIGQLTRLQLLDLSNCWL--LEVIAPNVISKLSQ 240 (606)
Q Consensus 166 ~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~--~~~~p~~~i~~l~~ 240 (606)
..+..|+.|++.++.++....+-.|++|++|+++.| ++. .++.-..++++|++|++++|+. +.++++ +..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcc
Confidence 345566666676666666666677788888888888 444 5555556678888888888753 345554 577777
Q ss_pred CCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCC
Q 007371 241 LEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILP 287 (606)
Q Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 287 (606)
|..|++.+|...... ...-..+.-+++|+.|+-........|
T Consensus 118 L~~Ldl~n~~~~~l~-----dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLD-----DYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred hhhhhcccCCccccc-----cHHHHHHHHhhhhccccccccCCcccc
Confidence 778887777654421 112234455566666665544443333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.83 E-value=0.0042 Score=34.10 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=14.4
Q ss_pred CCCEeeecCCcCCcccccccC
Q 007371 192 KLEILILARSTIKQLPLEIGQ 212 (606)
Q Consensus 192 ~L~~L~l~~~~l~~lp~~i~~ 212 (606)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.55 E-value=0.044 Score=46.30 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=32.4
Q ss_pred HhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCC
Q 007371 141 FFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRL 216 (606)
Q Consensus 141 ~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L 216 (606)
.|.++.+|+.+.+.. .+..++. .|.++.+|+.+.+..+ +.. -..+..+.+|+.+.+.. .+..++. .+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444444444432 2333222 2334444444444432 222 13344444444444433 2333322 22334555
Q ss_pred CEEecCCCcccccccHHHhhCCCCCCEEEcc
Q 007371 217 QLLDLSNCWLLEVIAPNVISKLSQLEELYMG 247 (606)
Q Consensus 217 ~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~ 247 (606)
+.+.+..+ ...++...+.+. +|+.+.+.
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 55554331 223333334444 55555544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.0088 Score=32.81 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=14.6
Q ss_pred CCcEEEeeCCcCccCCccccC
Q 007371 147 GLKVLNFTRIHFSSLPSSLGC 167 (606)
Q Consensus 147 ~L~~L~l~~~~l~~lp~~~~~ 167 (606)
+|++|++++|.++.+|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.15 E-value=0.086 Score=44.51 Aligned_cols=115 Identities=16% Similarity=0.288 Sum_probs=60.0
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEe
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEIL 196 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L 196 (606)
.+.+|+.+.+.. ....+....|..+..|+.+.+..+ +..++. .+.++..++.+.+.. .+.. ...+..+.+|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 566788888764 466777777888888999988774 666444 567777888888865 3333 3567778888888
Q ss_pred eecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCC
Q 007371 197 ILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL 241 (606)
Q Consensus 197 ~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L 241 (606)
++..+ +..++. .+.+. +|+.+.+.. ....++...+.++++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 88764 655554 34555 888887765 3445555556666555
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.14 E-value=0.037 Score=28.09 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=7.8
Q ss_pred CCCEeeecCCcCCccc
Q 007371 192 KLEILILARSTIKQLP 207 (606)
Q Consensus 192 ~L~~L~l~~~~l~~lp 207 (606)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.19 E-value=0.06 Score=27.31 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=6.3
Q ss_pred CcceEeeccCCCCcccc
Q 007371 538 KLRYLTIENCPDMETFI 554 (606)
Q Consensus 538 ~L~~L~i~~Cp~L~~l~ 554 (606)
+|+.|++++|. |+++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555554 54443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.94 E-value=0.3 Score=27.85 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=14.3
Q ss_pred CCCCCEeeecCCcCCcccccc
Q 007371 190 LKKLEILILARSTIKQLPLEI 210 (606)
Q Consensus 190 l~~L~~L~l~~~~l~~lp~~i 210 (606)
+.+|++|++++|+++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776653
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.94 E-value=0.3 Score=27.85 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=14.3
Q ss_pred CCCCCEeeecCCcCCcccccc
Q 007371 190 LKKLEILILARSTIKQLPLEI 210 (606)
Q Consensus 190 l~~L~~L~l~~~~l~~lp~~i 210 (606)
+.+|++|++++|+++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776653
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.70 E-value=0.011 Score=53.77 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=48.5
Q ss_pred cCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEec
Q 007371 143 KGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDL 221 (606)
Q Consensus 143 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 221 (606)
..++...+||++.|.+..+-..++-+..|..|+++.+.+.. |..++.+..++.+++..|+.+..|.+.++++.++.++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34555666666666555555555555556666666555555 55556666666666666666666666666666666655
Q ss_pred CCC
Q 007371 222 SNC 224 (606)
Q Consensus 222 ~~~ 224 (606)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 554
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.64 E-value=0.39 Score=27.47 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=8.2
Q ss_pred CccceEeecccccccc
Q 007371 510 PKLFKLRLTDLPKLKR 525 (606)
Q Consensus 510 ~~L~~L~l~~c~~L~~ 525 (606)
|+|++|+|++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4455555555555444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.09 E-value=0.026 Score=51.29 Aligned_cols=83 Identities=7% Similarity=0.000 Sum_probs=47.0
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeee
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILIL 198 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l 198 (606)
.......|+++.+....+... |+.+..|..|+++.|.+..+|..++.+..++.+++..|..+. |.+.+..+++++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 334444455444444333333 245555666666666666666666666666666666666555 666666666666666
Q ss_pred cCCcC
Q 007371 199 ARSTI 203 (606)
Q Consensus 199 ~~~~l 203 (606)
.++.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 66543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.27 E-value=0.99 Score=25.66 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=12.4
Q ss_pred CCCcEEEeeCCcCccCCcc
Q 007371 146 EGLKVLNFTRIHFSSLPSS 164 (606)
Q Consensus 146 ~~L~~L~l~~~~l~~lp~~ 164 (606)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777777666654
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.27 E-value=0.99 Score=25.66 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=12.4
Q ss_pred CCCcEEEeeCCcCccCCcc
Q 007371 146 EGLKVLNFTRIHFSSLPSS 164 (606)
Q Consensus 146 ~~L~~L~l~~~~l~~lp~~ 164 (606)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777777666654
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.60 E-value=2.8 Score=23.93 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=13.2
Q ss_pred CCCEeeecCCcCCcccc
Q 007371 192 KLEILILARSTIKQLPL 208 (606)
Q Consensus 192 ~L~~L~l~~~~l~~lp~ 208 (606)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57788888888887775
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.94 E-value=2.6 Score=43.80 Aligned_cols=90 Identities=13% Similarity=-0.033 Sum_probs=55.1
Q ss_pred CCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccc
Q 007371 316 KSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRRE 395 (606)
Q Consensus 316 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 395 (606)
+.+.+..++|++|.+. .+..-..+....|+|+.|+|++|.....-..++. .-....|++|.+.|+|-.+.........
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhh-hhcCCCHHHeeecCCccccchhhhHHHH
Confidence 4556667777777663 3333334555569999999999854444333444 2345678999999999777654322111
Q ss_pred cccccccccccch
Q 007371 396 EGELRRWEGNLNS 408 (606)
Q Consensus 396 ~~~~~~~~~~L~~ 408 (606)
..+...||+|..
T Consensus 294 -~~i~~~FPKL~~ 305 (585)
T KOG3763|consen 294 -SAIRELFPKLLR 305 (585)
T ss_pred -HHHHHhcchhee
Confidence 122456777766
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.89 E-value=7.2 Score=22.30 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=8.9
Q ss_pred CCCCEeeecCCcCCc
Q 007371 191 KKLEILILARSTIKQ 205 (606)
Q Consensus 191 ~~L~~L~l~~~~l~~ 205 (606)
.+|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666665543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.88 E-value=5.6 Score=21.96 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=4.1
Q ss_pred CCCEeeecCCc
Q 007371 192 KLEILILARST 202 (606)
Q Consensus 192 ~L~~L~l~~~~ 202 (606)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44444444443
No 89
>PF05729 NACHT: NACHT domain
Probab=56.07 E-value=14 Score=32.24 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=36.0
Q ss_pred CCCceEEEEecchhh--hhccCCccccccCCCCChHhHHHHhhhhh
Q 007371 38 QRRCTIILTSRKQDL--LRIDMSCQKNFPIDALPRKEALQLFEKRM 81 (606)
Q Consensus 38 ~~gs~IivTTR~~~v--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 81 (606)
..+.+|+||+|.... ..........+++.++++.+..+++.+..
T Consensus 118 ~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 118 PPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 458999999999887 44555556789999999999999988754
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=40.18 E-value=19 Score=20.85 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=6.6
Q ss_pred CCcEEEeeCCcC
Q 007371 147 GLKVLNFTRIHF 158 (606)
Q Consensus 147 ~L~~L~l~~~~l 158 (606)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=31.90 E-value=1 Score=47.38 Aligned_cols=131 Identities=24% Similarity=0.215 Sum_probs=55.3
Q ss_pred CcEEEeeCCcCcc-----CCccccCCCCCcEEEeeCCCCCC------Cccc----CCCCCCCEeeecCCcCC-----ccc
Q 007371 148 LKVLNFTRIHFSS-----LPSSLGCLINLQTLCLDYCRLKD------IAIV----GQLKKLEILILARSTIK-----QLP 207 (606)
Q Consensus 148 L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~------~~~i----~~l~~L~~L~l~~~~l~-----~lp 207 (606)
+++|++..|.++. +...+....+++.++++.|.+.. +..+ ....++++|.+.+|.++ .+-
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 4445555554432 33334445555555555554321 1222 23455555555555444 111
Q ss_pred ccccCCCC-CCEEecCCCccccc----ccHHHhhCC-CCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371 208 LEIGQLTR-LQLLDLSNCWLLEV----IAPNVISKL-SQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA 281 (606)
Q Consensus 208 ~~i~~L~~-L~~L~l~~~~~~~~----~p~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 281 (606)
..+...+. ++.|++..|..-.. +.+. +..+ ..++++++..|.+..... ......+....+++++.+..|
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~----~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPC-LSVLSETLRVLDLSRNSITEKGV----RDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHH-hcccchhhhhhhhhcCCccccch----HHHHHHHhhhHHHHHhhcccC
Confidence 22233333 44455554332211 1111 2333 344555555555433221 122233444445555555555
Q ss_pred CC
Q 007371 282 DA 283 (606)
Q Consensus 282 ~~ 283 (606)
.+
T Consensus 301 ~l 302 (478)
T KOG4308|consen 301 PL 302 (478)
T ss_pred cc
Confidence 44
No 92
>PRK06893 DNA replication initiation factor; Validated
Probab=21.79 E-value=93 Score=29.16 Aligned_cols=43 Identities=14% Similarity=0.352 Sum_probs=31.8
Q ss_pred CCceEEEEecch----------hhhhccCCccccccCCCCChHhHHHHhhhhhc
Q 007371 39 RRCTIILTSRKQ----------DLLRIDMSCQKNFPIDALPRKEALQLFEKRMF 82 (606)
Q Consensus 39 ~gs~IivTTR~~----------~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 82 (606)
.|..|+|+|.+. ++ +..+.....++++.+++++.++++++.+.
T Consensus 123 ~~~~illits~~~p~~l~~~~~~L-~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 123 QGKTLLLISADCSPHALSIKLPDL-ASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred cCCcEEEEeCCCChHHccccchhH-HHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 366665555443 55 55666667889999999999999998764
Done!