Query 007371
Match_columns 606
No_of_seqs 385 out of 4088
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 00:07:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 1.2E-30 4.1E-35 284.9 32.9 452 100-584 33-557 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-31 2E-35 287.4 29.4 432 100-584 32-531 (606)
3 3vq2_A TLR4, TOLL-like recepto 100.0 4E-31 1.4E-35 288.6 27.7 412 100-555 56-538 (606)
4 3rgz_A Protein brassinosteroid 100.0 1.9E-31 6.5E-36 298.0 23.2 429 100-584 100-548 (768)
5 3rgz_A Protein brassinosteroid 100.0 3.7E-31 1.3E-35 295.7 25.2 439 120-592 198-723 (768)
6 2z63_A TOLL-like receptor 4, v 100.0 2.5E-30 8.4E-35 280.4 29.0 396 100-554 28-510 (570)
7 3t6q_A CD180 antigen; protein- 100.0 3.5E-30 1.2E-34 281.2 29.4 411 102-554 14-492 (606)
8 2z81_A CD282 antigen, TOLL-lik 100.0 5.9E-30 2E-34 276.0 24.9 425 100-584 26-507 (549)
9 1ziw_A TOLL-like receptor 3; i 100.0 8.4E-29 2.9E-33 274.0 32.6 155 100-255 25-187 (680)
10 4eco_A Uncharacterized protein 100.0 1.3E-29 4.3E-34 276.8 22.9 355 137-554 198-603 (636)
11 4ecn_A Leucine-rich repeat pro 100.0 2.5E-29 8.4E-34 279.2 25.1 398 100-553 323-842 (876)
12 2z63_A TOLL-like receptor 4, v 100.0 3.2E-29 1.1E-33 271.7 25.2 430 103-584 10-528 (570)
13 4eco_A Uncharacterized protein 100.0 1.2E-29 4.3E-34 276.9 19.3 379 109-551 192-633 (636)
14 1ziw_A TOLL-like receptor 3; i 100.0 8E-28 2.7E-32 266.1 32.4 265 103-383 7-283 (680)
15 2z81_A CD282 antigen, TOLL-lik 100.0 8.5E-29 2.9E-33 267.0 22.3 411 100-549 50-509 (549)
16 4ecn_A Leucine-rich repeat pro 100.0 8.7E-29 3E-33 274.8 22.7 379 110-551 435-873 (876)
17 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-28 1.6E-32 259.3 26.4 388 103-555 3-461 (520)
18 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-27 6.2E-32 268.6 29.2 432 100-567 24-535 (844)
19 1o6v_A Internalin A; bacterial 100.0 1.2E-26 4.1E-31 244.4 31.1 346 100-554 46-391 (466)
20 3v47_A TOLL-like receptor 5B a 100.0 6.5E-27 2.2E-31 246.1 26.5 372 104-548 14-406 (455)
21 3j0a_A TOLL-like receptor 5; m 100.0 8.6E-27 3E-31 263.1 28.7 425 103-584 7-514 (844)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-26 5.5E-31 249.5 27.2 145 100-251 31-181 (562)
23 2z7x_B TOLL-like receptor 1, v 99.9 6.3E-26 2.2E-30 242.7 28.5 411 125-584 3-478 (520)
24 1o6v_A Internalin A; bacterial 99.9 2.2E-25 7.4E-30 234.8 29.4 326 120-554 44-369 (466)
25 4fmz_A Internalin; leucine ric 99.9 8E-26 2.7E-30 228.8 24.6 303 120-521 42-344 (347)
26 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-25 5.6E-30 245.7 29.1 152 100-252 52-214 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-25 4E-30 242.7 25.7 386 120-555 29-490 (562)
28 3v47_A TOLL-like receptor 5B a 99.9 4.4E-26 1.5E-30 239.7 19.6 360 100-521 30-406 (455)
29 3o6n_A APL1; leucine-rich repe 99.9 8.9E-25 3E-29 224.7 27.8 306 118-521 41-350 (390)
30 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-25 7.6E-30 232.9 23.6 261 100-465 42-302 (457)
31 1jl5_A Outer protein YOPM; leu 99.9 3.3E-25 1.1E-29 231.3 23.3 298 125-525 74-371 (454)
32 2id5_A Lingo-1, leucine rich r 99.9 3.9E-25 1.3E-29 233.8 23.4 313 126-521 15-331 (477)
33 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-24 6.3E-29 237.3 27.4 151 104-256 35-190 (635)
34 3oja_B Anopheles plasmodium-re 99.9 3.3E-24 1.1E-28 232.7 27.8 305 119-521 48-356 (597)
35 2id5_A Lingo-1, leucine rich r 99.9 4.6E-24 1.6E-28 225.6 27.0 263 103-382 14-282 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 3.2E-24 1.1E-28 220.6 23.2 300 100-486 45-350 (390)
37 4fmz_A Internalin; leucine ric 99.9 8.4E-24 2.9E-28 213.9 25.4 301 100-486 44-344 (347)
38 1jl5_A Outer protein YOPM; leu 99.9 2.9E-23 9.9E-28 216.7 28.8 342 60-491 25-372 (454)
39 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-23 5.4E-28 218.9 24.0 289 100-490 64-353 (457)
40 3oja_B Anopheles plasmodium-re 99.9 2.6E-23 8.9E-28 225.6 23.7 300 100-486 51-356 (597)
41 4fcg_A Uncharacterized protein 99.9 2.2E-22 7.4E-27 201.2 19.0 221 145-382 80-311 (328)
42 1xku_A Decorin; proteoglycan, 99.9 1.4E-21 4.6E-26 196.1 24.6 241 122-383 31-274 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 4E-22 1.4E-26 200.2 20.1 240 122-383 33-275 (332)
44 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-22 4.3E-27 201.7 15.9 245 100-386 50-305 (313)
45 4fcg_A Uncharacterized protein 99.9 1.5E-21 5.3E-26 195.0 19.4 218 99-354 80-310 (328)
46 1ogq_A PGIP-2, polygalacturona 99.9 1E-21 3.4E-26 195.1 14.4 248 122-436 50-306 (313)
47 2z80_A TOLL-like receptor 2, v 99.9 2.2E-21 7.4E-26 196.5 16.6 269 102-383 33-312 (353)
48 2ft3_A Biglycan; proteoglycan, 99.9 5.9E-21 2E-25 191.6 19.6 263 101-384 34-306 (332)
49 3ogk_B Coronatine-insensitive 99.9 1.6E-22 5.4E-27 220.0 8.6 91 446-548 433-524 (592)
50 3ogk_B Coronatine-insensitive 99.9 5E-23 1.7E-27 223.9 4.3 353 143-551 109-501 (592)
51 1xku_A Decorin; proteoglycan, 99.9 2.3E-20 7.7E-25 187.2 23.1 264 101-384 32-305 (330)
52 1ozn_A Reticulon 4 receptor; N 99.9 8.8E-21 3E-25 186.0 18.5 264 103-382 14-284 (285)
53 2z66_A Variable lymphocyte rec 99.8 5.8E-21 2E-25 189.4 15.0 241 104-383 11-259 (306)
54 2z80_A TOLL-like receptor 2, v 99.8 1.1E-20 3.6E-25 191.4 16.5 199 120-356 29-233 (353)
55 2z66_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 183.7 19.1 254 100-365 28-294 (306)
56 3zyi_A Leucine-rich repeat-con 99.8 4.7E-20 1.6E-24 193.2 20.8 242 102-383 56-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 5E-20 1.7E-24 192.3 20.5 242 102-383 45-290 (440)
58 2p1m_B Transport inhibitor res 99.8 1.7E-22 5.9E-27 219.8 1.5 404 100-549 66-518 (594)
59 1z7x_W Ribonuclease inhibitor; 99.8 2.8E-22 9.5E-27 211.1 -0.3 158 123-284 4-183 (461)
60 2p1m_B Transport inhibitor res 99.8 7.9E-22 2.7E-26 214.6 0.7 375 120-549 64-493 (594)
61 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-18 5.2E-23 186.6 26.0 158 100-288 40-198 (622)
62 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-20 4.7E-25 187.4 7.1 218 120-385 32-250 (317)
63 3zyj_A Leucine-rich repeat-con 99.8 1.2E-18 4.1E-23 181.8 19.7 222 100-333 64-294 (440)
64 2z62_A TOLL-like receptor 4, v 99.8 1.8E-18 6E-23 168.7 19.3 223 105-335 12-241 (276)
65 1wwl_A Monocyte differentiatio 99.8 5.6E-20 1.9E-24 182.6 8.8 243 100-383 43-307 (312)
66 3zyi_A Leucine-rich repeat-con 99.8 1.6E-18 5.5E-23 181.5 19.8 222 100-333 75-305 (452)
67 2o6q_A Variable lymphocyte rec 99.8 5.6E-18 1.9E-22 164.4 21.6 200 101-333 17-220 (270)
68 1z7x_W Ribonuclease inhibitor; 99.8 7.9E-21 2.7E-25 199.9 1.0 384 102-522 5-439 (461)
69 1ozn_A Reticulon 4 receptor; N 99.8 2.8E-18 9.5E-23 168.1 19.0 218 125-383 14-236 (285)
70 3o53_A Protein LRIM1, AGAP0063 99.8 2E-19 6.8E-24 179.0 10.3 239 100-360 34-277 (317)
71 3rfs_A Internalin B, repeat mo 99.8 2.5E-18 8.4E-23 167.1 17.2 201 121-366 40-243 (272)
72 1p9a_G Platelet glycoprotein I 99.8 5.8E-18 2E-22 165.8 19.8 199 100-333 10-210 (290)
73 3g06_A SSPH2 (leucine-rich rep 99.8 2.1E-17 7.2E-22 177.7 24.9 235 100-384 61-296 (622)
74 1wwl_A Monocyte differentiatio 99.8 4.1E-19 1.4E-23 176.3 10.1 217 102-329 65-307 (312)
75 3oja_A Leucine-rich immune mol 99.8 3.2E-19 1.1E-23 188.0 7.2 124 123-253 35-158 (487)
76 3rfs_A Internalin B, repeat mo 99.8 6.6E-18 2.3E-22 164.1 15.8 173 100-283 41-217 (272)
77 2o6q_A Variable lymphocyte rec 99.8 2.3E-17 7.8E-22 160.1 18.3 176 100-284 37-218 (270)
78 1p9a_G Platelet glycoprotein I 99.8 1.2E-17 4E-22 163.6 16.1 158 120-289 8-166 (290)
79 1h6u_A Internalin H; cell adhe 99.8 1.9E-17 6.6E-22 163.7 17.6 170 100-286 41-210 (308)
80 1h6u_A Internalin H; cell adhe 99.7 4.2E-17 1.4E-21 161.3 19.8 202 110-331 29-230 (308)
81 3oja_A Leucine-rich immune mol 99.7 4.4E-18 1.5E-22 179.2 12.3 232 100-353 34-270 (487)
82 2z62_A TOLL-like receptor 4, v 99.7 2E-17 6.8E-22 161.2 15.0 192 100-301 28-232 (276)
83 2xwt_C Thyrotropin receptor; s 99.7 1.3E-17 4.5E-22 158.7 12.6 128 123-251 32-168 (239)
84 3m19_A Variable lymphocyte rec 99.7 5.8E-17 2E-21 155.4 16.9 174 101-284 15-192 (251)
85 2xwt_C Thyrotropin receptor; s 99.7 3E-17 1E-21 156.2 13.7 190 100-300 31-233 (239)
86 1h6t_A Internalin B; cell adhe 99.7 2.5E-16 8.6E-21 154.3 17.4 173 100-289 46-218 (291)
87 2ast_B S-phase kinase-associat 99.7 4E-17 1.4E-21 164.0 10.4 231 122-365 70-313 (336)
88 4glp_A Monocyte differentiatio 99.7 5.7E-17 1.9E-21 160.7 10.7 160 121-289 90-269 (310)
89 2ast_B S-phase kinase-associat 99.7 1.1E-16 3.8E-21 160.7 11.1 124 148-281 49-178 (336)
90 3m19_A Variable lymphocyte rec 99.7 2.2E-15 7.4E-20 144.4 18.5 177 122-333 14-194 (251)
91 1h6t_A Internalin B; cell adhe 99.7 1.1E-15 3.7E-20 149.8 16.6 177 107-300 31-207 (291)
92 4ay9_X Follicle-stimulating ho 99.7 1.3E-15 4.5E-20 153.6 15.8 234 126-381 13-255 (350)
93 1m9s_A Internalin B; cell inva 99.6 8.8E-16 3E-20 164.9 14.7 173 100-289 43-215 (605)
94 4ezg_A Putative uncharacterize 99.6 1.5E-15 5.3E-20 139.6 14.1 148 121-283 43-193 (197)
95 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 150.3 17.2 195 149-382 12-212 (350)
96 4glp_A Monocyte differentiatio 99.6 1.2E-15 4E-20 151.2 12.7 178 99-288 90-289 (310)
97 2ca6_A RAN GTPase-activating p 99.6 8.3E-17 2.8E-21 164.9 4.2 70 312-383 238-314 (386)
98 4ezg_A Putative uncharacterize 99.6 6.8E-15 2.3E-19 135.3 16.3 147 100-252 44-194 (197)
99 1m9s_A Internalin B; cell inva 99.6 3E-15 1E-19 160.7 15.8 179 105-300 26-204 (605)
100 2ca6_A RAN GTPase-activating p 99.6 7.5E-17 2.6E-21 165.2 2.6 238 100-360 32-318 (386)
101 3cvr_A Invasion plasmid antige 99.6 1.2E-14 4.1E-19 154.3 17.6 187 100-334 59-246 (571)
102 1xeu_A Internalin C; cellular 99.6 2.7E-15 9.4E-20 144.5 11.5 170 102-289 21-190 (263)
103 2o6s_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 138.8 11.4 170 103-289 10-184 (208)
104 3e6j_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 136.5 15.5 146 125-283 22-171 (229)
105 3goz_A Leucine-rich repeat-con 99.6 2.3E-16 7.8E-21 160.0 3.0 248 105-383 3-295 (362)
106 2v9t_B SLIT homolog 2 protein 99.6 1.3E-14 4.5E-19 135.7 14.4 148 125-284 14-165 (220)
107 2v9t_B SLIT homolog 2 protein 99.6 1.3E-14 4.5E-19 135.7 13.7 149 103-253 14-166 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 1.4E-14 4.7E-19 135.6 13.8 148 125-284 14-166 (220)
109 1xeu_A Internalin C; cellular 99.6 7.4E-15 2.5E-19 141.4 11.9 170 69-255 19-188 (263)
110 2v70_A SLIT-2, SLIT homolog 2 99.6 1.6E-14 5.4E-19 135.2 13.3 150 103-254 14-168 (220)
111 2o6s_A Variable lymphocyte rec 99.6 4.6E-14 1.6E-18 130.9 16.3 145 125-281 10-158 (208)
112 3e6j_A Variable lymphocyte rec 99.6 3.9E-14 1.3E-18 133.4 14.6 150 103-254 22-174 (229)
113 2xot_A Amphoterin-induced prot 99.6 1.6E-14 5.5E-19 146.2 12.8 149 104-254 22-178 (361)
114 3cvr_A Invasion plasmid antige 99.6 3.7E-14 1.3E-18 150.6 15.5 191 123-366 60-251 (571)
115 2ell_A Acidic leucine-rich nuc 99.5 7.7E-14 2.6E-18 124.6 12.0 139 144-289 22-165 (168)
116 3goz_A Leucine-rich repeat-con 99.5 5.4E-15 1.9E-19 149.8 4.1 199 100-302 22-262 (362)
117 1dce_A Protein (RAB geranylger 99.5 3.5E-16 1.2E-20 167.0 -5.1 179 100-289 349-551 (567)
118 2xot_A Amphoterin-induced prot 99.5 1.2E-13 4.1E-18 139.7 11.9 152 100-252 39-202 (361)
119 2ell_A Acidic leucine-rich nuc 99.5 2.3E-13 7.9E-18 121.5 11.3 131 122-255 24-163 (168)
120 1w8a_A SLIT protein; signaling 99.4 7.6E-13 2.6E-17 120.8 11.6 125 125-253 11-140 (192)
121 2je0_A Acidic leucine-rich nuc 99.4 4.2E-13 1.4E-17 117.2 8.7 106 146-253 17-127 (149)
122 2je0_A Acidic leucine-rich nuc 99.4 3.9E-13 1.3E-17 117.4 8.0 125 120-247 15-148 (149)
123 4b8c_D Glucose-repressible alc 99.4 6.5E-14 2.2E-18 154.3 3.6 154 100-256 173-333 (727)
124 1a9n_A U2A', U2A'; complex (nu 99.4 8.4E-13 2.9E-17 118.8 9.6 134 143-283 16-152 (176)
125 1w8a_A SLIT protein; signaling 99.4 2E-12 6.8E-17 118.1 12.0 128 103-231 11-143 (192)
126 2wfh_A SLIT homolog 2 protein 99.4 2.8E-12 9.6E-17 117.0 12.5 123 125-251 13-138 (193)
127 4b8c_D Glucose-repressible alc 99.4 1.8E-13 6.2E-18 150.7 3.5 147 107-255 208-357 (727)
128 2wfh_A SLIT homolog 2 protein 99.3 6.5E-12 2.2E-16 114.6 12.9 123 103-227 13-139 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.3 1.4E-12 4.8E-17 117.3 8.1 130 119-251 16-152 (176)
130 2o6r_A Variable lymphocyte rec 99.3 8.5E-12 2.9E-16 112.3 13.0 127 124-254 9-139 (177)
131 1dce_A Protein (RAB geranylger 99.3 1.3E-12 4.4E-17 139.5 8.6 151 120-278 407-567 (567)
132 2o6r_A Variable lymphocyte rec 99.3 4E-11 1.4E-15 107.8 13.5 126 148-284 9-137 (177)
133 1ds9_A Outer arm dynein; leuci 99.2 3.9E-13 1.3E-17 123.5 -2.2 104 120-225 46-151 (198)
134 1ds9_A Outer arm dynein; leuci 99.2 2.7E-13 9.4E-18 124.6 -4.2 140 134-277 37-180 (198)
135 3sb4_A Hypothetical leucine ri 99.1 1E-10 3.5E-15 116.5 9.9 78 100-178 49-157 (329)
136 2r9u_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 100.7 11.9 102 149-253 15-119 (174)
137 3g39_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 100.5 11.5 101 149-252 12-115 (170)
138 2r9u_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 100.9 11.2 100 125-227 15-118 (174)
139 3sb4_A Hypothetical leucine ri 99.1 4.2E-10 1.4E-14 112.1 11.0 106 145-255 24-140 (329)
140 3g39_A Variable lymphocyte rec 99.1 7.8E-10 2.7E-14 98.5 11.0 104 123-229 10-117 (170)
141 3un9_A NLR family member X1; l 98.9 2.9E-10 1E-14 114.7 0.8 192 65-284 43-252 (372)
142 4fdw_A Leucine rich hypothetic 98.8 9E-08 3.1E-12 97.4 16.2 233 123-382 136-380 (401)
143 4fdw_A Leucine rich hypothetic 98.8 2.1E-07 7.3E-12 94.6 17.7 236 121-383 112-356 (401)
144 3un9_A NLR family member X1; l 98.7 1.2E-09 4E-14 110.3 0.1 87 168-255 154-255 (372)
145 2ifg_A High affinity nerve gro 98.7 2.7E-08 9.1E-13 99.8 9.9 90 133-224 20-113 (347)
146 2ifg_A High affinity nerve gro 98.7 6.1E-08 2.1E-12 97.1 9.9 102 104-205 12-117 (347)
147 4fs7_A Uncharacterized protein 98.5 1.8E-06 6.1E-11 88.0 17.2 122 120-248 69-194 (394)
148 3e4g_A ATP synthase subunit S, 98.5 7.2E-08 2.4E-12 84.5 4.7 94 449-553 61-155 (176)
149 2ra8_A Uncharacterized protein 98.4 3.1E-07 1.1E-11 91.7 7.5 178 100-284 107-320 (362)
150 4fs7_A Uncharacterized protein 98.3 2.1E-05 7.2E-10 80.0 19.0 144 100-249 71-218 (394)
151 3e4g_A ATP synthase subunit S, 98.3 3.5E-07 1.2E-11 80.2 4.4 89 424-527 64-156 (176)
152 2a5y_B CED-4; apoptosis; HET: 98.1 5.4E-07 1.8E-11 96.0 0.9 80 5-99 244-324 (549)
153 1io0_A Tropomodulin; LRR prote 98.0 2.5E-06 8.7E-11 76.6 3.8 109 142-251 32-163 (185)
154 2ra8_A Uncharacterized protein 98.0 1.1E-05 3.8E-10 80.4 7.4 169 100-282 139-341 (362)
155 4gt6_A Cell surface protein; l 97.9 0.00047 1.6E-08 69.9 19.2 119 124-248 66-191 (394)
156 4gt6_A Cell surface protein; l 97.9 0.0032 1.1E-07 63.7 24.1 112 134-249 51-170 (394)
157 1io0_A Tropomodulin; LRR prote 97.9 5.8E-06 2E-10 74.2 3.0 119 161-284 28-164 (185)
158 3rw6_A Nuclear RNA export fact 97.8 7.9E-06 2.7E-10 77.2 2.6 56 189-245 194-257 (267)
159 3rw6_A Nuclear RNA export fact 97.7 5.6E-05 1.9E-09 71.4 6.6 78 143-220 167-257 (267)
160 4h09_A Hypothetical leucine ri 97.2 0.042 1.4E-06 55.0 21.6 59 445-517 282-340 (379)
161 1vt4_I APAF-1 related killer D 96.8 0.00013 4.4E-09 80.6 -1.8 64 4-83 244-313 (1221)
162 3sfz_A APAF-1, apoptotic pepti 96.7 0.00038 1.3E-08 81.9 1.5 65 5-84 237-302 (1249)
163 4h09_A Hypothetical leucine ri 95.1 0.13 4.4E-06 51.4 11.5 126 141-279 212-341 (379)
164 1pgv_A TMD-1, tropomodulin TMD 94.3 0.03 1E-06 49.8 3.8 81 143-223 38-135 (197)
165 1z6t_A APAF-1, apoptotic prote 94.0 0.022 7.6E-07 60.9 2.9 62 5-83 237-301 (591)
166 3rfe_A Platelet glycoprotein I 94.0 0.087 3E-06 43.5 5.8 31 171-201 33-65 (130)
167 3rfe_A Platelet glycoprotein I 92.9 0.14 4.7E-06 42.2 5.4 53 126-181 12-67 (130)
168 1pgv_A TMD-1, tropomodulin TMD 92.8 0.078 2.7E-06 47.1 3.9 113 165-282 37-168 (197)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-30 Score=284.90 Aligned_cols=452 Identities=12% Similarity=0.059 Sum_probs=265.3
Q ss_pred CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l 176 (606)
..+++|++++|.+..++. .. .+++|++|++++|.+..+....|.++++|++|++++|.+.. .|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 468999999999977744 34 89999999999998888876667899999999999999988 5778999999999999
Q ss_pred eCCCCCC--CcccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCC--EEEccCCCC
Q 007371 177 DYCRLKD--IAIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE--ELYMGNSFS 251 (606)
Q Consensus 177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~--~L~l~~~~~ 251 (606)
++|.++. +..++++++|++|++++|.++.++ +.+..+++|++|++++|...+..|.. ++.+++|+ +|++++|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCcc
Confidence 9999888 578899999999999999988763 34445999999999997655444544 89999999 889998887
Q ss_pred CCccccCCCc--------------------------------------------cchHhhccCCCCCEEEEeeCCCCCCC
Q 007371 252 GWEKVEGGSN--------------------------------------------ASLVELERLTKLATLEIEVADAEILP 287 (606)
Q Consensus 252 ~~~~~~~~~~--------------------------------------------~~~~~l~~l~~L~~L~l~~~~~~~~~ 287 (606)
....+..-.. ..+..+..+ +|+.|++.+|.+..++
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNIS 270 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-EEEEEECTTCCCSSCC
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC-ceeEEEeecCccCccC
Confidence 6554321100 000111111 4555555555555554
Q ss_pred ccc-c-ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccc
Q 007371 288 PNF-V-SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHEL 365 (606)
Q Consensus 288 ~~~-~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 365 (606)
... . .++|+.|++..+. ...++..+..+++|+.|++++|.+.+..+ ..+. .+++|++|++++|.....++...
T Consensus 271 ~~~~~~l~~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~--~~~~-~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQ--ISAS-NFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp TTTTTTCTTCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGG--GCGG-GCTTCSEEECCSCSSCCBCCSST
T ss_pred HHHhccccCCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCch--hhhh-ccCcCCEEECCCCCcccccchhh
Confidence 432 2 2566666653221 12344455566666666666655433221 1122 23566666666655443443321
Q ss_pred cCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh------hhhhhccccccceeccccccccccc
Q 007371 366 DDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC------YEEMIGFRDIIHLQLSHFPRLKEIW 438 (606)
Q Consensus 366 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~------~~~~~~~~~L~~L~l~~~~~l~~~~ 438 (606)
++.+++|++|++++|.-- .+... +.....+++|+. .+..+ +..+..+++|+.|++.++.-....+
T Consensus 346 --~~~l~~L~~L~l~~n~l~-~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 346 --LENLENLRELDLSHDDIE-TSDCC-----NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp --TTTCTTCCEEECCSSCCC-EEEES-----TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred --hhccCcCCEEECCCCccc-cccCc-----chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 225566666666655422 11100 000233444444 22222 1223344555557766654222111
Q ss_pred cCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeec
Q 007371 439 HGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLT 518 (606)
Q Consensus 439 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 518 (606)
. ..+..+++|++|++++| .+....+ ..+..+++|++|++++|.--...... ...+..+++|+.|+++
T Consensus 418 ~---~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 418 Q---SPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQK--------TNSLQTLGRLEILVLS 484 (606)
T ss_dssp C---CTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECS--------SCGGGGCTTCCEEECT
T ss_pred c---hhhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCCCCCcccccc--------chhhccCCCccEEECC
Confidence 1 11355667777777764 4554433 23456677777777766522111100 1223456677777777
Q ss_pred cccccccccccccccccCCCcceEeeccCCCCccccc-C---CccccccccC--------hhhhhhhccccceeeccc
Q 007371 519 DLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFIS-N---STSVLHMTAD--------NKEAQKLKSEKNLLVADQ 584 (606)
Q Consensus 519 ~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~-~---~~~~~~l~~~--------~~~~~~l~~l~~l~i~~~ 584 (606)
+| +++.++. .....+++|+.|++++|. +..++. . ...+ .+++. ...+..+++|+.+.++++
T Consensus 485 ~n-~l~~~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 485 FC-DLSSIDQ--HAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp TS-CCCEECT--TTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CC-ccCccCh--hhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 66 4444432 244556677777776663 333321 1 1111 22221 123566778888877665
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=5.8e-31 Score=287.38 Aligned_cols=432 Identities=17% Similarity=0.173 Sum_probs=243.3
Q ss_pred CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l 176 (606)
+.+++|++++|.+..++. .. ++++|++|++++|.+..++...|.++++|++|++++|.++.+ |..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 568888888888876665 23 788888888888887777666678888888888888888874 778888888888888
Q ss_pred eCCCCCC--CcccCCCCCCCEeeecCCcCC--cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCC----EEEccC
Q 007371 177 DYCRLKD--IAIVGQLKKLEILILARSTIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE----ELYMGN 248 (606)
Q Consensus 177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~----~L~l~~ 248 (606)
++|.+.. +..++++++|++|++++|.++ .+|..++++++|++|++++|...+..|.. ++.+++|+ +|++++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHHCTTCCCEEECTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhccccccceeeccC
Confidence 8888777 367888888888888888877 46888888888888888887655444433 55555444 788888
Q ss_pred CCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC--CCCccccc-cCCcEE---------------------------
Q 007371 249 SFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE--ILPPNFVS-VELQRY--------------------------- 298 (606)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~-~~L~~L--------------------------- 298 (606)
|.+...++ ..+ ...+|++|++++|... .+|..+.. +.++.+
T Consensus 191 n~l~~~~~--------~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 191 NPIDFIQD--------QAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp CCCCEECT--------TTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred CCcceeCc--------ccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 87765553 222 2236777777766542 11111111 222222
Q ss_pred -----EEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCC
Q 007371 299 -----RIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPR 373 (606)
Q Consensus 299 -----~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~ 373 (606)
.+...+......+. +..+++|+.++++++... .++ ++.. +++|++|++.+|.. +.+|. . .+++
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~---~l~~-~~~L~~L~l~~n~l-~~lp~----~-~l~~ 329 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE---DVPK-HFKWQSLSIIRCQL-KQFPT----L-DLPF 329 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC---CCCT-TCCCSEEEEESCCC-SSCCC----C-CCSS
T ss_pred cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh---hccc-cccCCEEEcccccC-ccccc----C-CCCc
Confidence 22111222222222 455556666666665542 222 1211 35566666666544 44442 2 4556
Q ss_pred CcEEEeecCCCceEeccccccccccccccccccch-hhhhh--------hhhhhccccccceeccccccccccccCCCCC
Q 007371 374 LKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC--------YEEMIGFRDIIHLQLSHFPRLKEIWHGQALP 444 (606)
Q Consensus 374 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~--------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 444 (606)
|++|++++|..+..+ + ...+++|+. .+..+ +..+..+++|+.|++.++. +..++. .
T Consensus 330 L~~L~l~~n~~~~~~--------~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~----~ 394 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF--------K--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA----N 394 (606)
T ss_dssp CCEEEEESCSSCEEC--------C--CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC----C
T ss_pred cceeeccCCcCccch--------h--hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchh----h
Confidence 666666665444332 0 233444444 12111 3344455555557766654 333331 2
Q ss_pred ccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccc
Q 007371 445 VSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLK 524 (606)
Q Consensus 445 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 524 (606)
+..+++|+.|++++| ++....+...+..+++|++|++++|. +.... +..+..+++|++|++.+|.--.
T Consensus 395 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----------~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 395 FMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDF----------DGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECC----------TTTTTTCTTCCEEECTTCEEGG
T ss_pred ccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccc----------hhhhcCCCCCCEEECCCCcCCC
Confidence 345566666666664 34444333334566666666666655 22211 1123345555555555542211
Q ss_pred c-ccccccccccCCCcceEeeccCCCCccccc----CCccccccccCh--------hhhhhhccccceeeccc
Q 007371 525 R-FCNFTRNIIELPKLRYLTIENCPDMETFIS----NSTSVLHMTADN--------KEAQKLKSEKNLLVADQ 584 (606)
Q Consensus 525 ~-l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~----~~~~~~~l~~~~--------~~~~~l~~l~~l~i~~~ 584 (606)
. ++ .....+++|+.|++++| +++.+++ ....++.+++.. ..+..+++|+.|.++++
T Consensus 463 ~~~~---~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 463 NTLS---NVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp GEEC---SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred cchH---HhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 1 22 13344455555555554 2333221 112233333222 24556788999999888
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=4e-31 Score=288.64 Aligned_cols=412 Identities=17% Similarity=0.127 Sum_probs=266.8
Q ss_pred CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l 176 (606)
+.+++|++++|.+..++. .. .+++|++|++++|.+..++...|.++++|++|++++|.+..++ ..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 889999999999977754 33 8999999999999998886666799999999999999999865 78999999999999
Q ss_pred eCCCCCC---CcccCCCCCCCEeeecCCcCCccc-ccccCCCCCC----EEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371 177 DYCRLKD---IAIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQ----LLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248 (606)
Q Consensus 177 ~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~----~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~ 248 (606)
++|.+.. |..++++++|++|++++|.++.++ ..++.+++|+ +|++++|.. ..++.. .....+|++|++++
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l-~~~~~~-~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQ-AFQGIKLHELTLRG 213 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC-CEECTT-TTTTCEEEEEEEES
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc-ceeCcc-cccCceeeeeeccC
Confidence 9999874 788999999999999999999764 4566655554 899999764 456655 34444899999888
Q ss_pred CCCCCcc-------------------------------------------------ccCCCccchHhhccCCCCCEEEEe
Q 007371 249 SFSGWEK-------------------------------------------------VEGGSNASLVELERLTKLATLEIE 279 (606)
Q Consensus 249 ~~~~~~~-------------------------------------------------~~~~~~~~~~~l~~l~~L~~L~l~ 279 (606)
|.+.... ...........+..+++|+.|++.
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence 8653100 000001112225667778888888
Q ss_pred eCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcc
Q 007371 280 VADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQ 359 (606)
Q Consensus 280 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 359 (606)
++.+..+|.....++|+.|++..+.. ..++ .+ .+++|+.|++++|........ . .+++|++|++++|....
T Consensus 294 ~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp-~~-~l~~L~~L~l~~n~~~~~~~~----~-~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 294 GVSIKYLEDVPKHFKWQSLSIIRCQL--KQFP-TL-DLPFLKSLTLTMNKGSISFKK----V-ALPSLSYLDLSRNALSF 364 (606)
T ss_dssp SCCCCCCCCCCTTCCCSEEEEESCCC--SSCC-CC-CCSSCCEEEEESCSSCEECCC----C-CCTTCCEEECCSSCEEE
T ss_pred CccchhhhhccccccCCEEEcccccC--cccc-cC-CCCccceeeccCCcCccchhh----c-cCCCCCEEECcCCccCC
Confidence 77777777222237778887754443 3333 33 677777777777644333311 1 24667777777654332
Q ss_pred c--ccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhhh-------hhhhccccccceecc
Q 007371 360 S--VVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKCY-------EEMIGFRDIIHLQLS 429 (606)
Q Consensus 360 ~--~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~~-------~~~~~~~~L~~L~l~ 429 (606)
. ++..+. .+++|++|++++|. +..+.. ....+++|+. .+..+. ..+..+++|+.|++.
T Consensus 365 ~~~~~~~~~---~~~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 365 SGCCSYSDL---GTNSLRHLDLSFNG-AIIMSA--------NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EEECCHHHH---CCSCCCEEECCSCS-EEEECC--------CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred Ccchhhhhc---cCCcccEeECCCCc-cccchh--------hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 2 133333 66677777777664 333310 0233445554 222221 133445556667777
Q ss_pred ccccccccccCCCCCccccCCccEEEeccCCCccc-ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCC
Q 007371 430 HFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSS-AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPL 508 (606)
Q Consensus 430 ~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~ 508 (606)
++.-....+. .++.+++|++|++++| .++. .+| ..+.++++|++|++++|. ++.++ +..+..
T Consensus 433 ~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~----------~~~~~~ 495 (606)
T 3vq2_A 433 YTNTKIDFDG----IFLGLTSLNTLKMAGN-SFKDNTLS-NVFANTTNLTFLDLSKCQ-LEQIS----------WGVFDT 495 (606)
T ss_dssp TSCCEECCTT----TTTTCTTCCEEECTTC-EEGGGEEC-SCCTTCTTCCEEECTTSC-CCEEC----------TTTTTT
T ss_pred CCCCCccchh----hhcCCCCCCEEECCCC-cCCCcchH-HhhccCCCCCEEECCCCc-CCccC----------hhhhcc
Confidence 7653332221 2356677777777775 3443 223 224567777777777764 44432 223456
Q ss_pred CCccceEeeccccccccccccccccccCCCcceEeeccCCCCccccc
Q 007371 509 FPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFIS 555 (606)
Q Consensus 509 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~ 555 (606)
+++|++|++++| +++.+.+ .....+++|+.|++++|. ++.+|.
T Consensus 496 l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 496 LHRLQLLNMSHN-NLLFLDS--SHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp CTTCCEEECCSS-CCSCEEG--GGTTTCTTCCEEECTTSC-CCCEES
T ss_pred cccCCEEECCCC-cCCCcCH--HHccCCCcCCEEECCCCc-CcccCH
Confidence 777777777777 4544422 355667777788877774 666664
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=1.9e-31 Score=298.00 Aligned_cols=429 Identities=17% Similarity=0.079 Sum_probs=269.8
Q ss_pred CCCeEEEecCCCC-cccCC--cc-cccccceeeccccccc-ccchhHhcCCCCCcEEEeeCCcCcc-CCcc---ccCCCC
Q 007371 100 KDPIAISLTYGGI-QVLPE--RL-QCPCLELLHTEGDGSM-QVSDHFFKGTEGLKVLNFTRIHFSS-LPSS---LGCLIN 170 (606)
Q Consensus 100 ~~l~~L~l~~~~~-~~l~~--~~-~l~~L~~L~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~---~~~l~~ 170 (606)
.++++|++++|.+ +.+|. .. .+++|++|++++|... .+|..++.++++|++|++++|.++. .|.. +.++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 6778888888777 34554 33 7778888887777543 3444444677788888888887776 3333 677788
Q ss_pred CcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCC
Q 007371 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSF 250 (606)
Q Consensus 171 L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~ 250 (606)
|++|++++|.+.+...+.++++|++|++++|.+...++.++++++|++|++++|...+.+|.. ++.+++|++|++++|.
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSC
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCc
Confidence 888888888776633347788888888888877754444788888888888887766667766 7888888888888887
Q ss_pred CCCccccCCCccchHhhccCCCCCEEEEeeCCCC-CCCccccc--cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecC
Q 007371 251 SGWEKVEGGSNASLVELERLTKLATLEIEVADAE-ILPPNFVS--VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKG 327 (606)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 327 (606)
+....+. . .+++|++|++++|.+. .+|..+.. ++|+.|++. ++......+..+..+++|+.|++++
T Consensus 259 l~~~~~~---------~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 259 FVGPIPP---------L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS-GNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp CEESCCC---------C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC-SSEEEECCCGGGGGCTTCCEEECCS
T ss_pred ccCccCc---------c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc-CCcCCCccchHHhcCCCccEEECCC
Confidence 6544431 1 6677777777777765 56666543 677777773 2333334555667777777777777
Q ss_pred cccccccccchhHHHhhccccceecccccCcccccccccCCCCCC-CCcEEEeecCCCceEecccccccccccccccccc
Q 007371 328 LEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFP-RLKHLHVKSCSEILHIVGSVRREEGELRRWEGNL 406 (606)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 406 (606)
|.+.+.++ ......+++|++|++++|.....+|..+. .++ +|++|++++|.--..+.... . ...+++|
T Consensus 328 n~l~~~ip--~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~~L~~L~Ls~N~l~~~~~~~~----~--~~~~~~L 396 (768)
T 3rgz_A 328 NNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLT---NLSASLLTLDLSSNNFSGPILPNL----C--QNPKNTL 396 (768)
T ss_dssp SEEEEECC--HHHHTTCTTCCEEECCSSEEEECCCTTHH---HHTTTCSEEECCSSEEEEECCTTT----T--CSTTCCC
T ss_pred CcccCcCC--HHHHhcCCCCCEEeCcCCccCccccHHHH---hhhcCCcEEEccCCCcCCCcChhh----h--hcccCCc
Confidence 76644433 22122346777777777765555665554 454 77777777664322221000 0 1114455
Q ss_pred ch-hhhhh------hhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcE
Q 007371 407 NS-TIQKC------YEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVY 479 (606)
Q Consensus 407 ~~-~i~~~------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~ 479 (606)
+. .+..| +..+..+++|+.|++.++.--..++ ..++.+++|+.|++++| .+....|.. +..+++|++
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~ 470 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP----SSLGSLSKLRDLKLWLN-MLEGEIPQE-LMYVKTLET 470 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC----GGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCE
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc----HHHhcCCCCCEEECCCC-cccCcCCHH-HcCCCCceE
Confidence 55 22222 2345556666667777764322333 22466777888888775 354443433 467778888
Q ss_pred EEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccccCCcc
Q 007371 480 LEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTS 559 (606)
Q Consensus 480 L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~~~~ 559 (606)
|++++|.-...++ ..+..+++|++|++++|.-...+|. ++..+++|+.|++++|.-...+|
T Consensus 471 L~L~~N~l~~~~p-----------~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p----- 531 (768)
T 3rgz_A 471 LILDFNDLTGEIP-----------SGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNIP----- 531 (768)
T ss_dssp EECCSSCCCSCCC-----------GGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCEEECC-----
T ss_pred EEecCCcccCcCC-----------HHHhcCCCCCEEEccCCccCCcCCh---HHhcCCCCCEEECCCCcccCcCC-----
Confidence 8887765332332 2345678888888888754335544 66677888888888875443554
Q ss_pred ccccccChhhhhhhccccceeeccc
Q 007371 560 VLHMTADNKEAQKLKSEKNLLVADQ 584 (606)
Q Consensus 560 ~~~l~~~~~~~~~l~~l~~l~i~~~ 584 (606)
..+..+++|+.|.++++
T Consensus 532 --------~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 532 --------AELGDCRSLIWLDLNTN 548 (768)
T ss_dssp --------GGGGGCTTCCEEECCSS
T ss_pred --------HHHcCCCCCCEEECCCC
Confidence 23456777777777776
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.7e-31 Score=295.67 Aligned_cols=439 Identities=15% Similarity=0.122 Sum_probs=247.9
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEee
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILI 197 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~ 197 (606)
.+++|++|++++|.+...... +.++++|++|++++|.++. +|..++++++|++|++++|.+.+ ++.. .+++|++|+
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~ 275 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLS 275 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEE
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEE
Confidence 344444444444443332222 3444455555555554443 44444445555555555554443 1111 445555555
Q ss_pred ecCCcCC-cccccccCC-CCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCE
Q 007371 198 LARSTIK-QLPLEIGQL-TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLAT 275 (606)
Q Consensus 198 l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 275 (606)
+++|.++ .+|..+..+ ++|++|++++|...+.+|.. ++++++|++|++++|.+.+..+ ...++++++|++
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip-------~~~l~~l~~L~~ 347 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELP-------MDTLLKMRGLKV 347 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECC-------HHHHTTCTTCCE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCC-------HHHHhcCCCCCE
Confidence 5555444 555555553 66666666666665566655 6667777777777666543322 133777777777
Q ss_pred EEEeeCCCC-CCCccccc-c-CCcEEEEEeCCCCCCCCCCcccC--CCCCcEEEecCcccccccccchhHHHhhccccce
Q 007371 276 LEIEVADAE-ILPPNFVS-V-ELQRYRIRIGDESEDEFDPLLVK--SEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGL 350 (606)
Q Consensus 276 L~l~~~~~~-~~~~~~~~-~-~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L 350 (606)
|++++|.+. .+|..+.. . +|+.|++.. +......+..+.. +++|+.|++++|.+.+.++ .++.. +++|+.|
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p--~~l~~-l~~L~~L 423 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSS-NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSN-CSELVSL 423 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCS-SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC--GGGGG-CTTCCEE
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccC-CCcCCCcChhhhhcccCCccEEECCCCccccccC--HHHhc-CCCCCEE
Confidence 777777764 56665543 3 777777732 2222222333333 5667777777776654432 23332 4777788
Q ss_pred ecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhh------hhhhhhccccc
Q 007371 351 WLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQK------CYEEMIGFRDI 423 (606)
Q Consensus 351 ~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~------~~~~~~~~~~L 423 (606)
++++|.....+|..+. .+++|++|++++|.....+ +.....+++|+. .+.. .+..+..+++|
T Consensus 424 ~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLG---SLSKLRDLKLWLNMLEGEI--------PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp ECCSSEEESCCCGGGG---GCTTCCEEECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred ECcCCcccCcccHHHh---cCCCCCEEECCCCcccCcC--------CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 8877766666666655 7777888888777533222 111334555555 2222 23456667778
Q ss_pred cceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccc------
Q 007371 424 IHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEEL------ 497 (606)
Q Consensus 424 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~------ 497 (606)
+.|++.++.-...++.. ++.+++|++|++++| ++....|.. +.++++|++|++++|+-...+|..-..
T Consensus 493 ~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKW----IGRLENLAILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp CEEECCSSCCCSCCCGG----GGGCTTCCEEECCSS-CCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred CEEEccCCccCCcCChH----HhcCCCCCEEECCCC-cccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 88888887644444432 467889999999996 455443544 578899999999887643333321000
Q ss_pred -----------------------------------------------------cccccCCCCCCCCccceEeeccccccc
Q 007371 498 -----------------------------------------------------INADKEHIGPLFPKLFKLRLTDLPKLK 524 (606)
Q Consensus 498 -----------------------------------------------------~~~~~~~~~~~~~~L~~L~l~~c~~L~ 524 (606)
.....+..+..+++|+.|+++++.--.
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 000012234556788888888874333
Q ss_pred cccccccccccCCCcceEeeccCCCCcccccC---CccccccccChh--------hhhhhccccceeeccc-chhhhccC
Q 007371 525 RFCNFTRNIIELPKLRYLTIENCPDMETFISN---STSVLHMTADNK--------EAQKLKSEKNLLVADQ-IQHLFNEK 592 (606)
Q Consensus 525 ~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~---~~~~~~l~~~~~--------~~~~l~~l~~l~i~~~-~~~~~~~~ 592 (606)
.+|. .+..+++|+.|+++++.--..+|.. ...++.+++... .+..+++|+.|.++.+ ....+|+.
T Consensus 647 ~ip~---~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 647 YIPK---EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCG---GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCCH---HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 5544 6677888888888877533355533 234444444332 3567778888888777 43344443
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=280.39 Aligned_cols=396 Identities=17% Similarity=0.144 Sum_probs=245.6
Q ss_pred CCCeEEEecCCCCcccCCc--ccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPER--LQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~--~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l 176 (606)
+.+++|++++|.+..++.. ..+++|++|++++|.+..++...|.++++|++|++++|.++.+| ..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 5688999999999777643 38899999999999888888777889999999999999998854 68899999999999
Q ss_pred eCCCCCC-C-cccCCCCCCCEeeecCCcCCc--ccccccCCCCCCEEecCCCcccccccHHHhhCCCCC----CEEEccC
Q 007371 177 DYCRLKD-I-AIVGQLKKLEILILARSTIKQ--LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL----EELYMGN 248 (606)
Q Consensus 177 ~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L----~~L~l~~ 248 (606)
++|.++. + ..++++++|++|++++|.++. +|..++++++|++|++++|...+..+.. ++.+++| ++|++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhcccCC
Confidence 9999888 3 468999999999999998885 6888999999999999997655444444 7777777 7888888
Q ss_pred CCCCCccccCCC--------------------------------------------------------------------
Q 007371 249 SFSGWEKVEGGS-------------------------------------------------------------------- 260 (606)
Q Consensus 249 ~~~~~~~~~~~~-------------------------------------------------------------------- 260 (606)
|.+....+..-.
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 776554331100
Q ss_pred -----ccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccc
Q 007371 261 -----NASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQ 335 (606)
Q Consensus 261 -----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 335 (606)
+.....++.+++|++|++.++.+..+|..+...+|+.|++..+... .++. ..+++|+.|++.+|......+
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccc
Confidence 0011223444555555555555555555443335555555322221 1111 344555555555554433222
Q ss_pred cchhHHHhhccccceecccccCcccc--cccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhh
Q 007371 336 ENDGTKMLLQRTEGLWLETLEGVQSV--VHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKC 413 (606)
Q Consensus 336 ~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~ 413 (606)
. ..+++|++|++++|...... +..+. ++++|++|++++|. +..+... ...+++|+.
T Consensus 343 ~-----~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~~L~~L~l~~n~-l~~~~~~--------~~~l~~L~~----- 400 (570)
T 2z63_A 343 E-----VDLPSLEFLDLSRNGLSFKGCCSQSDF---GTTSLKYLDLSFNG-VITMSSN--------FLGLEQLEH----- 400 (570)
T ss_dssp C-----CBCTTCCEEECCSSCCBEEEEEEHHHH---TCSCCCEEECCSCS-EEEEEEE--------EETCTTCCE-----
T ss_pred c-----ccCCCCCEEeCcCCccCcccccccccc---ccCccCEEECCCCc-ccccccc--------ccccCCCCE-----
Confidence 1 12355666666555432211 22233 55566666665553 2222100 223344444
Q ss_pred hhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCc-ceee
Q 007371 414 YEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSL-EEVL 492 (606)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l-~~l~ 492 (606)
|.+.++.-....+. ..+..+++|++|++++| .+....+ ..+..+++|++|++++|.-. ..+
T Consensus 401 ------------L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~- 462 (570)
T 2z63_A 401 ------------LDFQHSNLKQMSEF---SVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFL- 462 (570)
T ss_dssp ------------EECTTSEEESCTTS---CTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEE-
T ss_pred ------------EEccCCccccccch---hhhhcCCCCCEEeCcCC-cccccch-hhhhcCCcCcEEECcCCcCccccc-
Confidence 77776542221111 12356677777777775 4555433 33466777777777776522 122
Q ss_pred ccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371 493 HLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI 554 (606)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~ 554 (606)
+..+..+++|++|++++| +++.+.. .....+++|++|++++| +++.++
T Consensus 463 ----------p~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 463 ----------PDIFTELRNLTFLDLSQC-QLEQLSP--TAFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp ----------CSCCTTCTTCCEEECTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCSCCC
T ss_pred ----------hhhhhcccCCCEEECCCC-ccccCCh--hhhhcccCCCEEeCCCC-cCCCCC
Confidence 224456777777777777 4554422 24556777777777777 466554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.5e-30 Score=281.16 Aligned_cols=411 Identities=16% Similarity=0.095 Sum_probs=276.9
Q ss_pred CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCC
Q 007371 102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~ 180 (606)
-+.++.++..+..+|.... +++++|++++|.+..++...|.++++|++|++++|.+.. .|..|+++++|++|++++|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3467788888888887552 379999999999999977778999999999999999988 57889999999999999999
Q ss_pred CCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371 181 LKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKV 256 (606)
Q Consensus 181 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 256 (606)
+.. |..++++++|++|++++|.++.+ |..++++++|++|++++|...+ ..|. +..+++|++|++++|.+....+
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSSCCCEECH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccCcccccCh
Confidence 888 68899999999999999999987 6789999999999999987655 2344 5569999999999998877654
Q ss_pred cCCCccchHhhccCCCCC--EEEEeeCCCCCCCccc-cccCCcEEEEE--------------------------------
Q 007371 257 EGGSNASLVELERLTKLA--TLEIEVADAEILPPNF-VSVELQRYRIR-------------------------------- 301 (606)
Q Consensus 257 ~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~-~~~~L~~L~l~-------------------------------- 301 (606)
..++.+++|+ +|++.+|.+..++... ....|+.|++.
T Consensus 171 --------~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 171 --------EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp --------HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred --------hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 7789999999 8888888876655432 22333333331
Q ss_pred -------------------eCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCccccc
Q 007371 302 -------------------IGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVV 362 (606)
Q Consensus 302 -------------------~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 362 (606)
.++......+..+..+++|+.|++++|.+. .+ |.++.. +++|++|++.+|......+
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l--p~~l~~-l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL--PSGLVG-LSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC--CSSCCS-CTTCCEEECTTCCCSBGGG
T ss_pred cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC--Chhhcc-cccCCEEECccCCcCcCch
Confidence 111122222333666777777777777653 22 223322 4677777777765554444
Q ss_pred ccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh--------hhhhhccccccceecccccc
Q 007371 363 HELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC--------YEEMIGFRDIIHLQLSHFPR 433 (606)
Q Consensus 363 ~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~--------~~~~~~~~~L~~L~l~~~~~ 433 (606)
..+. .+++|++|++++|.....+... ....+++|+. .+..+ +..+..+++|+.|.+.++.-
T Consensus 319 ~~~~---~l~~L~~L~l~~n~~~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 319 ISAS---NFPSLTHLSIKGNTKRLELGTG-------CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp GCGG---GCTTCSEEECCSCSSCCBCCSS-------TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred hhhh---ccCcCCEEECCCCCcccccchh-------hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence 4444 6777778877777533222100 0234555555 12211 33455566667777666532
Q ss_pred ccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccc
Q 007371 434 LKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLF 513 (606)
Q Consensus 434 l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 513 (606)
..+.. ..+..+++|++|++++| .++...+...+.++++|++|++++|. +...+ +..+..+++|+
T Consensus 389 -~~~~~---~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----------~~~~~~l~~L~ 452 (606)
T 3t6q_A 389 -LSLKT---EAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISS----------EQLFDGLPALQ 452 (606)
T ss_dssp -EEECT---TTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCC-CBTTC----------TTTTTTCTTCC
T ss_pred -CcCCH---HHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCc-cCCcC----------HHHHhCCCCCC
Confidence 22211 12355677777777774 44444343435667777777777765 32221 23455688888
Q ss_pred eEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371 514 KLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI 554 (606)
Q Consensus 514 ~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~ 554 (606)
+|++++|+--............+++|+.|++++| +++.++
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 492 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID 492 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccC
Confidence 8888888432211111234667888999999888 455553
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.9e-30 Score=276.03 Aligned_cols=425 Identities=16% Similarity=0.210 Sum_probs=254.5
Q ss_pred CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCcc-ccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSS-LGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l 176 (606)
+.+++|++++|.+..++. .. .+++|++|++++|.+..++...|.++++|++|++++|.++.+|.. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 568888888888866643 33 788888888888888777766678888888888888888886554 888888888888
Q ss_pred eCCCCCC---CcccCCCCCCCEeeecCCc-CCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCC
Q 007371 177 DYCRLKD---IAIVGQLKKLEILILARST-IKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFS 251 (606)
Q Consensus 177 ~~~~~~~---~~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 251 (606)
++|.++. |..++++++|++|++++|. +..+| ..++++++|++|++++|...+..|.. ++.+++|++|+++++..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcc
Confidence 8888764 4678888888888888886 56666 46788888888888887776667766 78888888888888776
Q ss_pred CCccccCCCccchHhhccCCCCCEEEEeeCCCCCCC---ccc--cccCCcEEEEEeCCCCCC---CCC------------
Q 007371 252 GWEKVEGGSNASLVELERLTKLATLEIEVADAEILP---PNF--VSVELQRYRIRIGDESED---EFD------------ 311 (606)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~---~~~------------ 311 (606)
...+. ..++.+++|++|++++|.+..++ ..+ ..++|+.|++........ .+.
T Consensus 185 ~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 185 AFLLE--------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp TTHHH--------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred cccch--------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 54432 33466888999999988876542 222 237788888743211000 000
Q ss_pred ------------------CcccCCCCCcEEEecCcccccccc--cchhHHHhhccccceecccccCcccccccccCCCCC
Q 007371 312 ------------------PLLVKSEAPRLMMLKGLEKVSILQ--ENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGF 371 (606)
Q Consensus 312 ------------------~~l~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l 371 (606)
..+..+.+++.+.+.++....... ....+...+++|+.|++.+|. ++.+|..+ .+.+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~--~~~l 333 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF--SQHL 333 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH--HHHC
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHH--HhcC
Confidence 111222333333333322111000 000011222445555555433 23344322 0134
Q ss_pred CCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh--------hhhhhccccccceeccccccccccccCCC
Q 007371 372 PRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC--------YEEMIGFRDIIHLQLSHFPRLKEIWHGQA 442 (606)
Q Consensus 372 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~--------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 442 (606)
++|++|++++|.-...+.... ...+.+++|+. .+..+ +..+..+++|+.|+++++ .++.++..
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 405 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNS-----ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS-- 405 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHH-----TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSC--
T ss_pred ccccEEEccCCccccccccch-----hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChh--
Confidence 555555555554221110000 00123344444 11111 122344455555888776 45555432
Q ss_pred CCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccc
Q 007371 443 LPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPK 522 (606)
Q Consensus 443 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 522 (606)
...+++|++|++++| +++.+ +.. -.++|++|++++|. ++.++ ..+++|++|++++| +
T Consensus 406 --~~~~~~L~~L~Ls~N-~l~~l-~~~---~~~~L~~L~Ls~N~-l~~~~--------------~~l~~L~~L~Ls~N-~ 462 (549)
T 2z81_A 406 --CQWPEKMRFLNLSST-GIRVV-KTC---IPQTLEVLDVSNNN-LDSFS--------------LFLPRLQELYISRN-K 462 (549)
T ss_dssp --CCCCTTCCEEECTTS-CCSCC-CTT---SCTTCSEEECCSSC-CSCCC--------------CCCTTCCEEECCSS-C
T ss_pred --hcccccccEEECCCC-Ccccc-cch---hcCCceEEECCCCC-hhhhc--------------ccCChhcEEECCCC-c
Confidence 356678888888885 46665 321 13578888887764 44432 25788888888887 6
Q ss_pred cccccccccccccCCCcceEeeccCCCCcccccCCccccccccChhhhhhhccccceeeccc
Q 007371 523 LKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQ 584 (606)
Q Consensus 523 L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~~~~~~~l~~~~~~~~~l~~l~~l~i~~~ 584 (606)
++.+|. ...+++|+.|+++++ +++.++.. .+..+++|+.|.++++
T Consensus 463 l~~ip~----~~~l~~L~~L~Ls~N-~l~~~~~~------------~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 463 LKTLPD----ASLFPVLLVMKISRN-QLKSVPDG------------IFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CSSCCC----GGGCTTCCEEECCSS-CCCCCCTT------------GGGGCTTCCEEECCSS
T ss_pred cCcCCC----cccCccCCEEecCCC-ccCCcCHH------------HHhcCcccCEEEecCC
Confidence 777765 345788888888887 56666532 2345666666666443
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=8.4e-29 Score=273.96 Aligned_cols=155 Identities=21% Similarity=0.153 Sum_probs=111.5
Q ss_pred CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 176 (606)
+.+++|++++|.+..++.. . .+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 4577888888887666653 2 77788888888777777766666778888888888888877665 4778888888888
Q ss_pred eCCCCCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhh--CCCCCCEEEccCCCC
Q 007371 177 DYCRLKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVIS--KLSQLEELYMGNSFS 251 (606)
Q Consensus 177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~--~l~~L~~L~l~~~~~ 251 (606)
++|.+.. +..++++++|++|++++|.++.. |..++++++|++|++++|...+..+.. ++ .+++|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-LDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH-HGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH-hhccccccccEEECCCCcc
Confidence 8887776 35677888888888888877754 445677888888888876644433332 33 457788888877766
Q ss_pred CCcc
Q 007371 252 GWEK 255 (606)
Q Consensus 252 ~~~~ 255 (606)
....
T Consensus 184 ~~~~ 187 (680)
T 1ziw_A 184 KEFS 187 (680)
T ss_dssp CCBC
T ss_pred cccC
Confidence 5544
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.3e-29 Score=276.84 Aligned_cols=355 Identities=15% Similarity=0.125 Sum_probs=262.0
Q ss_pred cchhHhcCCCCCcEEEeeCCcCcc------------------CCcccc--CCCCCcEEEeeCCCCCC--CcccCCCCCCC
Q 007371 137 VSDHFFKGTEGLKVLNFTRIHFSS------------------LPSSLG--CLINLQTLCLDYCRLKD--IAIVGQLKKLE 194 (606)
Q Consensus 137 ~~~~~~~~l~~L~~L~l~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~ 194 (606)
+|.. +.++++|++|++++|.++. +|..++ ++++|++|++++|.+.+ |..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 6665 4889999999999999998 999999 99999999999999777 78999999999
Q ss_pred EeeecCCc-CCc--ccccccCC------CCCCEEecCCCcccccccH--HHhhCCCCCCEEEccCCCCCCccccCCCccc
Q 007371 195 ILILARST-IKQ--LPLEIGQL------TRLQLLDLSNCWLLEVIAP--NVISKLSQLEELYMGNSFSGWEKVEGGSNAS 263 (606)
Q Consensus 195 ~L~l~~~~-l~~--lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (606)
+|++++|+ ++. +|..++++ ++|++|++++|... .+|. . ++++++|++|++++|.+.+..
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N~l~g~i-------- 346 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYNQLEGKL-------- 346 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSCCCEEEC--------
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCCcCccch--------
Confidence 99999998 884 89888887 99999999998766 8887 6 899999999999999876333
Q ss_pred hHhhccCCCCCEEEEeeCCCCCCCccccc-cC-CcEEEEEeCCCCCCCCCCcccCCC--CCcEEEecCcccccccccchh
Q 007371 264 LVELERLTKLATLEIEVADAEILPPNFVS-VE-LQRYRIRIGDESEDEFDPLLVKSE--APRLMMLKGLEKVSILQENDG 339 (606)
Q Consensus 264 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~L~~~~~~~~~~~~~~ 339 (606)
..++.+++|++|++++|.+..+|..+.. ++ |+.|++.... .. .++..+.... +|+.|++++|.+.+..+. +
T Consensus 347 -p~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~ 421 (636)
T 4eco_A 347 -PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK--N 421 (636)
T ss_dssp -CCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC--S
T ss_pred -hhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Cc-ccchhhhhcccCccCEEECcCCcCCCcchh--h
Confidence 2577888999999999998888887755 67 9999984433 33 5566666554 899999999888664432 1
Q ss_pred HH------HhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccc--cccccccccchhhh
Q 007371 340 TK------MLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEG--ELRRWEGNLNSTIQ 411 (606)
Q Consensus 340 ~~------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~--~~~~~~~~L~~~i~ 411 (606)
+. -.+++|+.|++++|... .+|..+ ...+++|++|++++|. ++.+... .+.. .....+++|+.
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~l~~L~~L~Ls~N~-l~~i~~~--~~~~~~~~~~~l~~L~~--- 492 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQIS-KFPKEL--FSTGSPLSSINLMGNM-LTEIPKN--SLKDENENFKNTYLLTS--- 492 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH--HHTTCCCSEEECCSSC-CSBCCSS--SSEETTEECTTGGGCCE---
T ss_pred hcccccccccCCCCCEEECcCCccC-cCCHHH--HccCCCCCEEECCCCC-CCCcCHH--HhccccccccccCCccE---
Confidence 11 01358999999997654 566543 2258999999999986 3333111 0000 00001115555
Q ss_pred hhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCC----
Q 007371 412 KCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDS---- 487 (606)
Q Consensus 412 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~---- 487 (606)
|++.++. +..++... ....+++|+.|+++++ +++.+ |.. +.++++|++|+++++..
T Consensus 493 --------------L~Ls~N~-l~~lp~~~--~~~~l~~L~~L~Ls~N-~l~~i-p~~-~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 493 --------------IDLRFNK-LTKLSDDF--RATTLPYLVGIDLSYN-SFSKF-PTQ-PLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp --------------EECCSSC-CCBCCGGG--STTTCTTCCEEECCSS-CCSSC-CCG-GGGCSSCCEEECCSCBCTTCC
T ss_pred --------------EECcCCc-CCccChhh--hhccCCCcCEEECCCC-CCCCc-Chh-hhcCCCCCEEECCCCcccccC
Confidence 9998864 44555332 0127899999999995 67776 544 46899999999976441
Q ss_pred --cceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371 488 --LEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI 554 (606)
Q Consensus 488 --l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~ 554 (606)
...+ +..+..+++|++|++++| +++.+|. .. .++|+.|++++|| +.++.
T Consensus 553 ~l~~~~-----------p~~l~~l~~L~~L~Ls~N-~l~~ip~---~~--~~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 553 RTLREW-----------PEGITLCPSLTQLQIGSN-DIRKVNE---KI--TPNISVLDIKDNP-NISID 603 (636)
T ss_dssp BCCCCC-----------CTTGGGCSSCCEEECCSS-CCCBCCS---CC--CTTCCEEECCSCT-TCEEE
T ss_pred cccccC-----------hHHHhcCCCCCEEECCCC-cCCccCH---hH--hCcCCEEECcCCC-Ccccc
Confidence 2222 335567999999999998 4588876 32 3899999999996 44443
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.5e-29 Score=279.20 Aligned_cols=398 Identities=15% Similarity=0.105 Sum_probs=293.6
Q ss_pred CCCeEEEecCCCC-cccCCcc-cccccceeec-cccc-------------------------------------------
Q 007371 100 KDPIAISLTYGGI-QVLPERL-QCPCLELLHT-EGDG------------------------------------------- 133 (606)
Q Consensus 100 ~~l~~L~l~~~~~-~~l~~~~-~l~~L~~L~~-~~~~------------------------------------------- 133 (606)
.++..|+++++.+ +.+|..+ ++++|++|++ ++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 6789999999999 6788776 8999999998 5542
Q ss_pred ----------------------------------ccccchhHhcCCCCCcEEEeeCCcCcc------------------C
Q 007371 134 ----------------------------------SMQVSDHFFKGTEGLKVLNFTRIHFSS------------------L 161 (606)
Q Consensus 134 ----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~l~~------------------l 161 (606)
+..+|.. +.++++|++|++++|.++. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1116666 4889999999999999998 9
Q ss_pred Ccccc--CCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCc-CCc--ccccccCCC-------CCCEEecCCCccc
Q 007371 162 PSSLG--CLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARST-IKQ--LPLEIGQLT-------RLQLLDLSNCWLL 227 (606)
Q Consensus 162 p~~~~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~~ 227 (606)
|..++ ++++|++|++++|.+.+ |..++++++|++|++++|+ ++. +|..+++++ +|++|++++|...
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99988 99999999999999776 8899999999999999997 884 888776665 9999999998766
Q ss_pred ccccH--HHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccc-cC-CcEEEEEeC
Q 007371 228 EVIAP--NVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVS-VE-LQRYRIRIG 303 (606)
Q Consensus 228 ~~~p~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~ 303 (606)
.+|. . ++++++|++|++++|.+... ..++.+++|+.|++++|.+..+|..+.. ++ |+.|++..+
T Consensus 562 -~ip~~~~-l~~L~~L~~L~Ls~N~l~~l----------p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 562 -EFPASAS-LQKMVKLGLLDCVHNKVRHL----------EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp -BCCCHHH-HTTCTTCCEEECTTSCCCBC----------CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred -ccCChhh-hhcCCCCCEEECCCCCcccc----------hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence 8887 6 99999999999999987622 2578899999999999999999987755 67 999999544
Q ss_pred CCCCCCCCCcccCCCC--CcEEEecCccccccccc-chhHHH-hhccccceecccccCcccccccccCCCCCCCCcEEEe
Q 007371 304 DESEDEFDPLLVKSEA--PRLMMLKGLEKVSILQE-NDGTKM-LLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHV 379 (606)
Q Consensus 304 ~~~~~~~~~~l~~~~~--L~~L~L~~~~~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l 379 (606)
. .. .++..+..... |+.|++++|.+.+.++. +..+.. ..++|+.|++++|... .+|..+ ...+++|++|++
T Consensus 630 ~-L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~--~~~l~~L~~L~L 704 (876)
T 4ecn_A 630 K-LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTEL--FATGSPISTIIL 704 (876)
T ss_dssp C-CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH--HHTTCCCSEEEC
T ss_pred C-CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHH--HccCCCCCEEEC
Confidence 4 33 55666666554 99999999988765432 111111 1258999999998655 566543 236899999999
Q ss_pred ecCCCceEeccccccccc--cccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEec
Q 007371 380 KSCSEILHIVGSVRREEG--ELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVD 457 (606)
Q Consensus 380 ~~c~~l~~~~~~~~~~~~--~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~ 457 (606)
++|. +..+... .+.. .....+++|+. |++.++ ++..++... ....+++|+.|+++
T Consensus 705 s~N~-L~~ip~~--~~~~~~~~l~nl~~L~~-----------------L~Ls~N-~L~~lp~~l--~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 705 SNNL-MTSIPEN--SLKPKDGNYKNTYLLTT-----------------IDLRFN-KLTSLSDDF--RATTLPYLSNMDVS 761 (876)
T ss_dssp CSCC-CSCCCTT--SSSCTTSCCTTGGGCCE-----------------EECCSS-CCCCCCGGG--STTTCTTCCEEECC
T ss_pred CCCc-CCccChH--HhccccccccccCCccE-----------------EECCCC-CCccchHHh--hhccCCCcCEEEeC
Confidence 9984 4443211 0000 00001224555 999987 555555332 11278999999999
Q ss_pred cCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCC
Q 007371 458 DCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELP 537 (606)
Q Consensus 458 ~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 537 (606)
++ +++.+ |.. +.++++|+.|++++++.+..-... ...+..+..+++|++|++++| .+..+|. . ..+
T Consensus 762 ~N-~L~~l-p~~-l~~L~~L~~L~Ls~N~~ls~N~l~-----~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~---~--l~~ 827 (876)
T 4ecn_A 762 YN-CFSSF-PTQ-PLNSSQLKAFGIRHQRDAEGNRIL-----RQWPTGITTCPSLIQLQIGSN-DIRKVDE---K--LTP 827 (876)
T ss_dssp SS-CCSSC-CCG-GGGCTTCCEEECCCCBCTTCCBCC-----CCCCTTGGGCSSCCEEECCSS-CCCBCCS---C--CCS
T ss_pred CC-CCCcc-chh-hhcCCCCCEEECCCCCCccccccc-----ccChHHHhcCCCCCEEECCCC-CCCccCH---h--hcC
Confidence 95 67776 544 468999999999875421110000 011345667999999999998 4588876 3 237
Q ss_pred CcceEeeccCCCCccc
Q 007371 538 KLRYLTIENCPDMETF 553 (606)
Q Consensus 538 ~L~~L~i~~Cp~L~~l 553 (606)
+|+.|++++|+ +.++
T Consensus 828 ~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 828 QLYILDIADNP-NISI 842 (876)
T ss_dssp SSCEEECCSCT-TCEE
T ss_pred CCCEEECCCCC-CCcc
Confidence 99999999997 4444
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=271.67 Aligned_cols=430 Identities=16% Similarity=0.161 Sum_probs=302.3
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~ 181 (606)
+.++-++.++..+|... .+++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 45666666777888744 35799999999999988877789999999999999999985 56789999999999999999
Q ss_pred CC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371 182 KD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKVE 257 (606)
Q Consensus 182 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 257 (606)
+. +..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+....+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~- 166 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC- 166 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECG-
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecH-
Confidence 88 4789999999999999999998876 68999999999999987655 46877 9999999999999998876654
Q ss_pred CCCccchHhhccCCCC----CEEEEeeCCCCCCCcccc-ccCCcEEEEEeCC----------------------------
Q 007371 258 GGSNASLVELERLTKL----ATLEIEVADAEILPPNFV-SVELQRYRIRIGD---------------------------- 304 (606)
Q Consensus 258 ~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~---------------------------- 304 (606)
..++.+++| ++|++++|.+..++.... ..+|+.|++....
T Consensus 167 -------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 167 -------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp -------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred -------HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 455666666 788888888766554332 2456666553210
Q ss_pred -----------------------------CCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccc
Q 007371 305 -----------------------------ESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETL 355 (606)
Q Consensus 305 -----------------------------~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 355 (606)
......+..+..+++|+.|++++|.+.. .|.++.. + +|++|++.+|
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---l~~~~~~-~-~L~~L~l~~n 314 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYN-F-GWQHLELVNC 314 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS---CCBCCSC-C-CCSEEEEESC
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh---hhhhhcc-C-CccEEeeccC
Confidence 1112223445566777788887766532 2223332 2 6777777776
Q ss_pred cCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh--------hhhhhccccccce
Q 007371 356 EGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC--------YEEMIGFRDIIHL 426 (606)
Q Consensus 356 ~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~--------~~~~~~~~~L~~L 426 (606)
... .+|. ..+++|++|++.++...... + ...+++|+. .+..+ +..+..+++|+.|
T Consensus 315 ~~~-~l~~-----~~l~~L~~L~l~~n~~~~~~--------~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 315 KFG-QFPT-----LKLKSLKRLTFTSNKGGNAF--------S--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378 (570)
T ss_dssp BCS-SCCB-----CBCSSCCEEEEESCBSCCBC--------C--CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred ccc-ccCc-----ccccccCEEeCcCCcccccc--------c--cccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence 543 3333 25677777777776533221 1 245666666 23222 3455667778888
Q ss_pred eccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCC
Q 007371 427 QLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIG 506 (606)
Q Consensus 427 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~ 506 (606)
++.++. +..++. .+..+++|++|++.+| .+....+...+.++++|++|++++|. +.... +..+
T Consensus 379 ~l~~n~-l~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----------~~~~ 441 (570)
T 2z63_A 379 DLSFNG-VITMSS----NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAF----------NGIF 441 (570)
T ss_dssp ECCSCS-EEEEEE----EEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSC-CEECC----------TTTT
T ss_pred ECCCCc-cccccc----cccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCc-ccccc----------hhhh
Confidence 888874 333332 2467889999999985 56665454456789999999999986 33322 2345
Q ss_pred CCCCccceEeecccccc-ccccccccccccCCCcceEeeccCCCCccccc----CCccccccccChh--------hhhhh
Q 007371 507 PLFPKLFKLRLTDLPKL-KRFCNFTRNIIELPKLRYLTIENCPDMETFIS----NSTSVLHMTADNK--------EAQKL 573 (606)
Q Consensus 507 ~~~~~L~~L~l~~c~~L-~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~----~~~~~~~l~~~~~--------~~~~l 573 (606)
..+++|++|++.+|.-. ..+|. ....+++|+.|++++|. ++.+++ ..+.++.+++..+ .+..+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hcCCcCcEEECcCCcCccccchh---hhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 67999999999999533 24544 67789999999999984 555532 1234555544333 24566
Q ss_pred ccccceeeccc
Q 007371 574 KSEKNLLVADQ 584 (606)
Q Consensus 574 ~~l~~l~i~~~ 584 (606)
++|+.|.++++
T Consensus 518 ~~L~~L~l~~N 528 (570)
T 2z63_A 518 TSLQKIWLHTN 528 (570)
T ss_dssp TTCCEEECCSS
T ss_pred cCCcEEEecCC
Confidence 77777777764
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.2e-29 Score=276.90 Aligned_cols=379 Identities=12% Similarity=0.083 Sum_probs=290.5
Q ss_pred CCCCcccCCcc-cccccceeecccccccc------------------cchhHhc--CCCCCcEEEeeCCcCcc-CCcccc
Q 007371 109 YGGIQVLPERL-QCPCLELLHTEGDGSMQ------------------VSDHFFK--GTEGLKVLNFTRIHFSS-LPSSLG 166 (606)
Q Consensus 109 ~~~~~~l~~~~-~l~~L~~L~~~~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~l~~-lp~~~~ 166 (606)
.|.+..+|..+ ++++|++|++++|.+.. +|..+ . ++++|++|++++|.+.. +|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHh
Confidence 34565588766 89999999999998877 88876 6 89999999999999876 999999
Q ss_pred CCCCCcEEEeeCCC-CCC---CcccCCC------CCCCEeeecCCcCCcccc--cccCCCCCCEEecCCCcccccccHHH
Q 007371 167 CLINLQTLCLDYCR-LKD---IAIVGQL------KKLEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNV 234 (606)
Q Consensus 167 ~l~~L~~L~l~~~~-~~~---~~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~ 234 (606)
++++|++|++++|. +++ |..++++ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~- 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A- 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-
Confidence 99999999999998 874 6777776 999999999999999999 99999999999999998887999 5
Q ss_pred hhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCC-CCEEEEeeCCCCCCCccccc---cCCcEEEEEeCCCCCCCC
Q 007371 235 ISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTK-LATLEIEVADAEILPPNFVS---VELQRYRIRIGDESEDEF 310 (606)
Q Consensus 235 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~ 310 (606)
++.+++|++|++++|.+...+ ..++.+++ |++|++++|.+..+|..+.. ++|+.|++. .+......
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp---------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls-~N~l~~~~ 418 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIP---------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS-YNEIGSVD 418 (636)
T ss_dssp CEEEEEESEEECCSSEEEECC---------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECC-SSCTTTTT
T ss_pred hCCCCCCCEEECCCCcccccc---------HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECc-CCcCCCcc
Confidence 999999999999999887443 66899999 99999999999999987654 379999884 34444444
Q ss_pred CCccc-------CCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccC-----CCCCCCCcEEE
Q 007371 311 DPLLV-------KSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD-----GEGFPRLKHLH 378 (606)
Q Consensus 311 ~~~l~-------~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-----~~~l~~L~~L~ 378 (606)
+..+. .+.+|+.|++++|.+. ..|..+...+++|++|++++|... .+|..... ..++++|++|+
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~---~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQIS---KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCC---SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEE
T ss_pred hhhhcccccccccCCCCCEEECcCCccC---cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEE
Confidence 45555 6779999999999875 345556666799999999998655 66654420 11234999999
Q ss_pred eecCCCceEecccccccccccc--ccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEe
Q 007371 379 VKSCSEILHIVGSVRREEGELR--RWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVV 456 (606)
Q Consensus 379 l~~c~~l~~~~~~~~~~~~~~~--~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i 456 (606)
+++|. ++.+... . ..+++|+. |++.++. +..++.. +..+++|+.|++
T Consensus 495 Ls~N~-l~~lp~~--------~~~~~l~~L~~-----------------L~Ls~N~-l~~ip~~----~~~l~~L~~L~L 543 (636)
T 4eco_A 495 LRFNK-LTKLSDD--------FRATTLPYLVG-----------------IDLSYNS-FSKFPTQ----PLNSSTLKGFGI 543 (636)
T ss_dssp CCSSC-CCBCCGG--------GSTTTCTTCCE-----------------EECCSSC-CSSCCCG----GGGCSSCCEEEC
T ss_pred CcCCc-CCccChh--------hhhccCCCcCE-----------------EECCCCC-CCCcChh----hhcCCCCCEEEC
Confidence 99985 4443110 2 25677777 9999864 4445533 478999999999
Q ss_pred ccC-----CCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccc---
Q 007371 457 DDC-----TNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCN--- 528 (606)
Q Consensus 457 ~~C-----~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~--- 528 (606)
+++ +++....|.. +.++++|++|++++|. ++.++.. .+++|+.|++++|+- ..+..
T Consensus 544 s~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~-l~~ip~~-------------~~~~L~~L~Ls~N~l-~~~~~~~~ 607 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSND-IRKVNEK-------------ITPNISVLDIKDNPN-ISIDLSYV 607 (636)
T ss_dssp CSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSC-CCBCCSC-------------CCTTCCEEECCSCTT-CEEECTTT
T ss_pred CCCcccccCcccccChHH-HhcCCCCCEEECCCCc-CCccCHh-------------HhCcCCEEECcCCCC-ccccHHhc
Confidence 653 3344444544 4789999999999987 5776541 348999999999953 33321
Q ss_pred ---cccccccCCCcceEeeccCCCCc
Q 007371 529 ---FTRNIIELPKLRYLTIENCPDME 551 (606)
Q Consensus 529 ---~~~~~~~~~~L~~L~i~~Cp~L~ 551 (606)
.......+...+..+|++||.|+
T Consensus 608 ~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 608 CPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp HHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred chhhhcccceeecCCccccCCCcccc
Confidence 00122233444666889999875
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=8e-28 Score=266.14 Aligned_cols=265 Identities=17% Similarity=0.090 Sum_probs=190.4
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~ 181 (606)
+.++.+++.+..+|.... +++++|++++|.+..++...|.++++|++|++++|.++. .|..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 467888888988887654 789999999999999998878999999999999999998 577889999999999999999
Q ss_pred CC-C-cccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371 182 KD-I-AIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG 258 (606)
Q Consensus 182 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 258 (606)
+. | ..++++++|++|++++|.++.+| ..++++++|++|++++|...+..|.. ++++++|++|++++|.+....+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~-- 162 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKS-- 162 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCH--
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCH--
Confidence 88 5 46999999999999999999887 57899999999999998876666655 8899999999999998876654
Q ss_pred CCccchHhhc--cCCCCCEEEEeeCCCCCCCcc-ccc-cCCcEEEEEeCCCCCCCCCCc---ccCCCCCcEEEecCcccc
Q 007371 259 GSNASLVELE--RLTKLATLEIEVADAEILPPN-FVS-VELQRYRIRIGDESEDEFDPL---LVKSEAPRLMMLKGLEKV 331 (606)
Q Consensus 259 ~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~~~~~---l~~~~~L~~L~L~~~~~~ 331 (606)
..++ .+++|++|++++|.+..++.. +.. .+|+.+.+..... ....... ....++|+.|++++|.+.
T Consensus 163 ------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 163 ------EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp ------HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC-HHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred ------HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc-ChhhHHHHHHHhhhccccEEEccCCccc
Confidence 4433 568999999999988766543 222 5666665421110 0000000 001245666666665553
Q ss_pred cccccchhHHHh-hccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 332 SILQENDGTKML-LQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 332 ~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
+..+ .++... .++|+.|++++|......+..+. .+++|++|++++|.
T Consensus 236 ~~~~--~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 236 TTSN--TTFLGLKWTNLTMLDLSYNNLNVVGNDSFA---WLPQLEYFFLEYNN 283 (680)
T ss_dssp EECT--TTTGGGGGSCCCEEECTTSCCCEECTTTTT---TCTTCCEEECCSCC
T ss_pred ccCh--hHhhccCcCCCCEEECCCCCcCccCccccc---CcccccEeeCCCCc
Confidence 3221 122211 12366666666544333333333 56666666666654
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=8.5e-29 Score=266.97 Aligned_cols=411 Identities=17% Similarity=0.118 Sum_probs=285.3
Q ss_pred CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc--CCccccCCCCCcEEE
Q 007371 100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS--LPSSLGCLINLQTLC 175 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~ 175 (606)
+++++|++++|.+..++. .. .+++|++|++++|.+..++...|.++++|++|++++|.++. .|..++++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 889999999999977764 33 89999999999999999998878999999999999999985 577899999999999
Q ss_pred eeCCC-CCC-C-cccCCCCCCCEeeecCCcCCc-ccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCC
Q 007371 176 LDYCR-LKD-I-AIVGQLKKLEILILARSTIKQ-LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFS 251 (606)
Q Consensus 176 l~~~~-~~~-~-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 251 (606)
+++|. +.. + ..+.++++|++|++++|.++. .|..++.+++|++|++++|. ...+|...++.+++|++|++++|.+
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCBC
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCcc
Confidence 99998 444 4 689999999999999999984 68899999999999999865 4567776567899999999999988
Q ss_pred CCccccCC-----------------------CccchHhhccCCCCCEEEEeeCCCCCCCcc-------c-cccCCcEEEE
Q 007371 252 GWEKVEGG-----------------------SNASLVELERLTKLATLEIEVADAEILPPN-------F-VSVELQRYRI 300 (606)
Q Consensus 252 ~~~~~~~~-----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------~-~~~~L~~L~l 300 (606)
........ .......+..+++|+.+++.++....++.. + ...+++.+.+
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 76421000 001112234556667777766544322111 1 1256666666
Q ss_pred EeCCCCCCC----CCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcE
Q 007371 301 RIGDESEDE----FDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKH 376 (606)
Q Consensus 301 ~~~~~~~~~----~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~ 376 (606)
......... .........+++.+++++|.+. ..|.++...+++|++|++++|.....+|......+.+++|++
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~---~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF---LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC---CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCccc---cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence 433221111 0011223456777777776652 234444444577777777777655544322111336777777
Q ss_pred EEeecCCCceEeccccccccccccccccccch-h-----hhhhhhhhhccccccceeccccccccccccCCCCCccccCC
Q 007371 377 LHVKSCSEILHIVGSVRREEGELRRWEGNLNS-T-----IQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNN 450 (606)
Q Consensus 377 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~-----i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~ 450 (606)
|++++|. ++.+... +.....+++|+. . +...+..+..+++|+.|++.++. +..++.. .+++
T Consensus 366 L~Ls~N~-l~~~~~~-----~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~------~~~~ 432 (549)
T 2z81_A 366 LVLSQNH-LRSMQKT-----GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTC------IPQT 432 (549)
T ss_dssp EECTTSC-CCCHHHH-----HHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTT------SCTT
T ss_pred EEccCCc-ccccccc-----hhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccch------hcCC
Confidence 7777764 3322100 000334555555 2 22333444556677779999875 5544322 2369
Q ss_pred ccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccc
Q 007371 451 LFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFT 530 (606)
Q Consensus 451 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 530 (606)
|++|++++| +++.++ ..+++|++|++++|. ++.++.. ..+++|+.|++++| +++.++.
T Consensus 433 L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N~-l~~ip~~------------~~l~~L~~L~Ls~N-~l~~~~~-- 490 (549)
T 2z81_A 433 LEVLDVSNN-NLDSFS-----LFLPRLQELYISRNK-LKTLPDA------------SLFPVLLVMKISRN-QLKSVPD-- 490 (549)
T ss_dssp CSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSSCCCG------------GGCTTCCEEECCSS-CCCCCCT--
T ss_pred ceEEECCCC-Chhhhc-----ccCChhcEEECCCCc-cCcCCCc------------ccCccCCEEecCCC-ccCCcCH--
Confidence 999999996 687762 478999999999974 7766542 35899999999997 7777765
Q ss_pred cccccCCCcceEeeccCCC
Q 007371 531 RNIIELPKLRYLTIENCPD 549 (606)
Q Consensus 531 ~~~~~~~~L~~L~i~~Cp~ 549 (606)
.....+++|+.|+++++|-
T Consensus 491 ~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp TGGGGCTTCCEEECCSSCB
T ss_pred HHHhcCcccCEEEecCCCc
Confidence 4577899999999999983
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=8.7e-29 Score=274.81 Aligned_cols=379 Identities=13% Similarity=0.108 Sum_probs=283.0
Q ss_pred CCCcccCCcc-cccccceeecccccccc------------------cchhH-hcCCCCCcEEEeeCCcCcc-CCccccCC
Q 007371 110 GGIQVLPERL-QCPCLELLHTEGDGSMQ------------------VSDHF-FKGTEGLKVLNFTRIHFSS-LPSSLGCL 168 (606)
Q Consensus 110 ~~~~~l~~~~-~l~~L~~L~~~~~~~~~------------------~~~~~-~~~l~~L~~L~l~~~~l~~-lp~~~~~l 168 (606)
|.+..+|..+ ++++|++|++++|.+.. +|..+ |.++++|++|++++|.+.. +|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4554488777 89999999999998877 88876 3489999999999998766 99999999
Q ss_pred CCCcEEEeeCCC-CCC---CcccCCCC-------CCCEeeecCCcCCcccc--cccCCCCCCEEecCCCcccccccHHHh
Q 007371 169 INLQTLCLDYCR-LKD---IAIVGQLK-------KLEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNVI 235 (606)
Q Consensus 169 ~~L~~L~l~~~~-~~~---~~~i~~l~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i 235 (606)
++|++|++++|. +++ |..++++. +|++|++++|.++.+|. .++++++|++|++++|... .+| . +
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-F 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-h
Confidence 999999999998 774 55555554 99999999999999999 9999999999999998765 888 4 9
Q ss_pred hCCCCCCEEEccCCCCCCccccCCCccchHhhccCCC-CCEEEEeeCCCCCCCccccc---cCCcEEEEEeCCCCC--CC
Q 007371 236 SKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTK-LATLEIEVADAEILPPNFVS---VELQRYRIRIGDESE--DE 309 (606)
Q Consensus 236 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~--~~ 309 (606)
+.+++|++|++++|.+...+ ..+.++++ |+.|++++|.+..+|..+.. ++|+.|++..+.... ..
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp---------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIP---------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp CTTSEESEEECCSSCCSCCC---------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred cCCCcceEEECcCCccccch---------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 99999999999999988443 56889999 99999999999999987654 459999985433221 11
Q ss_pred CCCccc--CCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccC-----CCCCCCCcEEEeecC
Q 007371 310 FDPLLV--KSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD-----GEGFPRLKHLHVKSC 382 (606)
Q Consensus 310 ~~~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-----~~~l~~L~~L~l~~c 382 (606)
++..+. ..++|+.|++++|.+. ..|.++...+++|+.|++++|... .+|..+.. ..++++|++|++++|
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~---~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQ---KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCC---SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred chhhhccccCCCcCEEEccCCcCC---ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence 112222 3458999999998875 345566666799999999998544 67765431 123459999999999
Q ss_pred CCceEecccccccccccc--ccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccC-
Q 007371 383 SEILHIVGSVRREEGELR--RWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDC- 459 (606)
Q Consensus 383 ~~l~~~~~~~~~~~~~~~--~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C- 459 (606)
. ++.+... . ..+++|+. |++.++. +..++. .+..+++|+.|+++++
T Consensus 739 ~-L~~lp~~--------l~~~~l~~L~~-----------------L~Ls~N~-L~~lp~----~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 739 K-LTSLSDD--------FRATTLPYLSN-----------------MDVSYNC-FSSFPT----QPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp C-CCCCCGG--------GSTTTCTTCCE-----------------EECCSSC-CSSCCC----GGGGCTTCCEEECCCCB
T ss_pred C-CccchHH--------hhhccCCCcCE-----------------EEeCCCC-CCccch----hhhcCCCCCEEECCCCC
Confidence 4 4443110 2 25677777 9999864 444543 3478999999999873
Q ss_pred ----CCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccc------c
Q 007371 460 ----TNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCN------F 529 (606)
Q Consensus 460 ----~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~------~ 529 (606)
+++....|.. +.++++|++|++++|. +..++.. .+++|+.|+|++|+ +..+.. .
T Consensus 788 ~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~-L~~Ip~~-------------l~~~L~~LdLs~N~-l~~i~~~~~~~~~ 851 (876)
T 4ecn_A 788 DAEGNRILRQWPTG-ITTCPSLIQLQIGSND-IRKVDEK-------------LTPQLYILDIADNP-NISIDVTSVCPYI 851 (876)
T ss_dssp CTTCCBCCCCCCTT-GGGCSSCCEEECCSSC-CCBCCSC-------------CCSSSCEEECCSCT-TCEEECGGGHHHH
T ss_pred CcccccccccChHH-HhcCCCCCEEECCCCC-CCccCHh-------------hcCCCCEEECCCCC-CCccChHHccccc
Confidence 3444444644 5789999999999987 5776542 34799999999996 333321 0
Q ss_pred ccccccCCCcceEeeccCCCCc
Q 007371 530 TRNIIELPKLRYLTIENCPDME 551 (606)
Q Consensus 530 ~~~~~~~~~L~~L~i~~Cp~L~ 551 (606)
......+..-+..+|.+||.|.
T Consensus 852 ~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 852 EAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp HTTCCEEECCTTSEEESCGGGC
T ss_pred cchheeecCCCccccCCCCCcc
Confidence 0111222223344778998764
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=259.33 Aligned_cols=388 Identities=14% Similarity=0.113 Sum_probs=252.1
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~ 181 (606)
+++++++|.+..+|.... ++|++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 689999999988887665 8999999999999888877779999999999999999884 77899999999999999998
Q ss_pred CC-CcccCCCCCCCEeeecCCcCCc--ccccccCCCCCCEEecCCCcccccccHHHhhCCCCC--CEEEccCCCC--CCc
Q 007371 182 KD-IAIVGQLKKLEILILARSTIKQ--LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL--EELYMGNSFS--GWE 254 (606)
Q Consensus 182 ~~-~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L--~~L~l~~~~~--~~~ 254 (606)
+. |.. .+++|++|++++|.++. +|..++++++|++|++++|...+ .. ++.+++| ++|++++|.+ ...
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeeccccccccc
Confidence 88 544 89999999999999885 57899999999999999976544 22 6777888 9999998876 222
Q ss_pred ccc-CCC-----------------------------------------------ccchHhhccCCCCCEEEEeeCCCCC-
Q 007371 255 KVE-GGS-----------------------------------------------NASLVELERLTKLATLEIEVADAEI- 285 (606)
Q Consensus 255 ~~~-~~~-----------------------------------------------~~~~~~l~~l~~L~~L~l~~~~~~~- 285 (606)
.+. ... ...+..++.+++|+.|++..+.+..
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 211 000 0011234555566666665544321
Q ss_pred ----CCccccccCCcEEEEEeCCCCCCCCCCcc-----cCCCCCcEEEecCcccccccccc-hhHHHhhc--cccceecc
Q 007371 286 ----LPPNFVSVELQRYRIRIGDESEDEFDPLL-----VKSEAPRLMMLKGLEKVSILQEN-DGTKMLLQ--RTEGLWLE 353 (606)
Q Consensus 286 ----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~l~--~L~~L~l~ 353 (606)
++.....++|+.|++..+. ....++..+ ..++.|+.+++++|.+ ..| .++...++ +|+.|+++
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~----~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVF----GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCC----CSCTHHHHHHHHTCCCSEEEEE
T ss_pred HHHHHHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccce----ecchhhhhcccccCceeEEEcC
Confidence 1111122488888884432 222344445 7888999999998776 223 44544443 48899998
Q ss_pred cccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccccc
Q 007371 354 TLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPR 433 (606)
Q Consensus 354 ~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~ 433 (606)
+|.... .+. ...+++|++|++++|.--..+ +.....+++|+. |.+.++.
T Consensus 311 ~n~l~~-~~~----~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~-----------------L~L~~N~- 359 (520)
T 2z7x_B 311 GTRMVH-MLC----PSKISPFLHLDFSNNLLTDTV--------FENCGHLTELET-----------------LILQMNQ- 359 (520)
T ss_dssp SSCCCC-CCC----CSSCCCCCEEECCSSCCCTTT--------TTTCCCCSSCCE-----------------EECCSSC-
T ss_pred CCcccc-ccc----hhhCCcccEEEeECCccChhh--------hhhhccCCCCCE-----------------EEccCCc-
Confidence 875432 221 137889999999888522211 111344566666 6666553
Q ss_pred ccccccCCCCCccccCCccEEEeccCCCccc-ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCC-Cc
Q 007371 434 LKEIWHGQALPVSFFNNLFDLVVDDCTNMSS-AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLF-PK 511 (606)
Q Consensus 434 l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~-~~ 511 (606)
+..++... ..++.+++|++|+++++ .++. + |...+..+++|++|++++|.--..++. .+ ++
T Consensus 360 l~~l~~~~-~~~~~l~~L~~L~Ls~N-~l~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------------~l~~~ 422 (520)
T 2z7x_B 360 LKELSKIA-EMTTQMKSLQQLDISQN-SVSYDE-KKGDCSWTKSLLSLNMSSNILTDTIFR--------------CLPPR 422 (520)
T ss_dssp CCBHHHHH-HHHTTCTTCCEEECCSS-CCBCCG-GGCSCCCCTTCCEEECCSSCCCGGGGG--------------SCCTT
T ss_pred cCccccch-HHHhhCCCCCEEECCCC-cCCccc-ccchhccCccCCEEECcCCCCCcchhh--------------hhccc
Confidence 22211100 11345667777777764 4554 4 333345566777777766652222211 12 56
Q ss_pred cceEeeccccccccccccccccccCCCcceEeeccCCCCccccc
Q 007371 512 LFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFIS 555 (606)
Q Consensus 512 L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~ 555 (606)
|+.|++++| +++.+|. ....+++|+.|++++| +++.+|.
T Consensus 423 L~~L~Ls~N-~l~~ip~---~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 423 IKVLDLHSN-KIKSIPK---QVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp CCEEECCSS-CCCCCCG---GGGGCTTCCEEECCSS-CCCCCCT
T ss_pred CCEEECCCC-cccccch---hhhcCCCCCEEECCCC-cCCccCH
Confidence 777777666 5555554 4446677777777666 4666553
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=268.58 Aligned_cols=432 Identities=15% Similarity=0.122 Sum_probs=242.4
Q ss_pred CCCeEEEecCCCCcccC-Ccc-cccccceeecccc-cccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEE
Q 007371 100 KDPIAISLTYGGIQVLP-ERL-QCPCLELLHTEGD-GSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLC 175 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~-~~~-~l~~L~~L~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~ 175 (606)
+.+++|++++|.+..+. ... .+++|++|++++| ....++...|.++++|++|++++|.+.. .|..++++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 67899999999996664 333 8899999998888 5566756667899999999999999988 588899999999999
Q ss_pred eeCCCCCC--Ccc--cCCCCCCCEeeecCCcCCccc--ccccCCCCCCEEecCCCcccccccHHHhhCC--CCCCEEEcc
Q 007371 176 LDYCRLKD--IAI--VGQLKKLEILILARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAPNVISKL--SQLEELYMG 247 (606)
Q Consensus 176 l~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l--~~L~~L~l~ 247 (606)
+++|.+.+ |.. ++++++|++|++++|.++.++ ..++++++|++|++++|...+..+.. ++.+ ++|+.|+++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECC
Confidence 99998876 443 889999999999999888653 56889999999999988766655555 6655 677777777
Q ss_pred CCCCCCccccCCCccchHhhccCC------CCCEEEEeeCCCC-CCCcccc-----------------------------
Q 007371 248 NSFSGWEKVEGGSNASLVELERLT------KLATLEIEVADAE-ILPPNFV----------------------------- 291 (606)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~~----------------------------- 291 (606)
+|.+....+ ..++.+. .|+.|++++|.+. ..+..+.
T Consensus 183 ~n~l~~~~~--------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 183 ANSLYSRVS--------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp CSBSCCCCC--------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred CCccccccc--------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 776554332 1122222 2555555555331 1111100
Q ss_pred ----------ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371 292 ----------SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV 361 (606)
Q Consensus 292 ----------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 361 (606)
.++|+.|++.. +......+..+..+++|+.|++++|.+.+..+ ..+. .+++|++|++++|......
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~-~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYNKINKIAD--EAFY-GLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTT-CCCCEECSCCSSSCCCCCEEEEESCCCCEECT--TTTT-TCSSCCEEEEESCCCSCCC
T ss_pred CChhhhhccccCCccEEECCC-CcccccChhhhhcCCCCCEEECCCCcCCCCCh--HHhc-CCCCCCEEECCCCCCCccC
Confidence 13455555421 11222223445556666666666655533221 1111 2356666666665443333
Q ss_pred cccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhhh-hhhhccccccceecccccccccccc
Q 007371 362 VHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKCY-EEMIGFRDIIHLQLSHFPRLKEIWH 439 (606)
Q Consensus 362 ~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~ 439 (606)
+..+. ++++|++|++++|. +..+.. .....+++|+. .+..+. ..+..+++|+.|.+.++. +..++.
T Consensus 331 ~~~~~---~l~~L~~L~L~~N~-i~~~~~-------~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~-l~~l~~ 398 (844)
T 3j0a_A 331 SSNFY---GLPKVAYIDLQKNH-IAIIQD-------QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK-LVTLPK 398 (844)
T ss_dssp SCSCS---SCTTCCEEECCSCC-CCCCCS-------SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCC-CCCCCC
T ss_pred HHHhc---CCCCCCEEECCCCC-CCccCh-------hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCC-cccccc
Confidence 33333 56666666666553 222210 00122344444 111111 011113333445555432 222221
Q ss_pred CC------------------CCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccc
Q 007371 440 GQ------------------ALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINAD 501 (606)
Q Consensus 440 ~~------------------~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~ 501 (606)
.. ......+++|+.|+++++ +++.+.+......+++|++|+++++. +..++.. ..
T Consensus 399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~-----~~ 471 (844)
T 3j0a_A 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM-LQLAWET-----EL 471 (844)
T ss_dssp CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCS-----CC
T ss_pred cccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc-ccccccc-----cc
Confidence 11 000113444555555442 33333221112234445555554432 2211110 00
Q ss_pred cCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccccC--CccccccccCh
Q 007371 502 KEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISN--STSVLHMTADN 567 (606)
Q Consensus 502 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~--~~~~~~l~~~~ 567 (606)
....+..+++|+.|++++| +++.++. .....+++|+.|+++++ +|+.+|.. +.+++.++++.
T Consensus 472 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~ 535 (844)
T 3j0a_A 472 CWDVFEGLSHLQVLYLNHN-YLNSLPP--GVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR 535 (844)
T ss_dssp CSSCSSCBCCEECCCCCHH-HHTTCCT--TSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEE
T ss_pred chhhhcCcccccEEECCCC-cccccCh--hHccchhhhheeECCCC-CCCccChhhhhccccEEECCC
Confidence 1233556788888888887 6777665 44567888888888887 67777653 23444444433
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.2e-26 Score=244.37 Aligned_cols=346 Identities=19% Similarity=0.201 Sum_probs=224.6
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
..++.|++.++.+..++....+++|++|++++|.+..++. +.++++|++|++++|.+..++. ++++++|++|++++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 7789999999999888876689999999999999888887 6889999999999999988776 899999999999999
Q ss_pred CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
.+...+.+.++++|++|++++|.+..+| .++.+++|++|++.+ . ...++. ++++++|++|++++|.+...
T Consensus 123 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~~~----- 192 (466)
T 1o6v_A 123 QITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVSDI----- 192 (466)
T ss_dssp CCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred CCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCCCC-----
Confidence 9888444899999999999999888876 488999999999864 2 334443 78999999999999876554
Q ss_pred CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchh
Q 007371 260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG 339 (606)
Q Consensus 260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 339 (606)
..+..+++|++|++++|.+..++.....++|+.|++..+.... ...+..+
T Consensus 193 -----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~~l~~l---------------------- 242 (466)
T 1o6v_A 193 -----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLASL---------------------- 242 (466)
T ss_dssp -----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC---CGGGGGC----------------------
T ss_pred -----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc---chhhhcC----------------------
Confidence 3478889999999998887665543223555555553221111 1223344
Q ss_pred HHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhc
Q 007371 340 TKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIG 419 (606)
Q Consensus 340 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~ 419 (606)
++|+.|++++|.... ++. + ..+++|++|++++|. +..+. + ...+++|+.
T Consensus 243 -----~~L~~L~l~~n~l~~-~~~-~---~~l~~L~~L~l~~n~-l~~~~-------~--~~~l~~L~~----------- 291 (466)
T 1o6v_A 243 -----TNLTDLDLANNQISN-LAP-L---SGLTKLTELKLGANQ-ISNIS-------P--LAGLTALTN----------- 291 (466)
T ss_dssp -----TTCSEEECCSSCCCC-CGG-G---TTCTTCSEEECCSSC-CCCCG-------G--GTTCTTCSE-----------
T ss_pred -----CCCCEEECCCCcccc-chh-h---hcCCCCCEEECCCCc-cCccc-------c--ccCCCccCe-----------
Confidence 445555555443222 221 2 245555555555553 11110 0 122333333
Q ss_pred cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccc
Q 007371 420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELIN 499 (606)
Q Consensus 420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~ 499 (606)
|++.++. +..+ .+.+.+++|+.|++++| +++.+.+ +..+++|++|++++|. +..++
T Consensus 292 ------L~L~~n~-l~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~------- 347 (466)
T 1o6v_A 292 ------LELNENQ-LEDI-----SPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS------- 347 (466)
T ss_dssp ------EECCSSC-CSCC-----GGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG-------
T ss_pred ------EEcCCCc-ccCc-----hhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch-------
Confidence 5555542 2222 12345566666666664 4555533 3456666666666653 44332
Q ss_pred cccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371 500 ADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI 554 (606)
Q Consensus 500 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~ 554 (606)
.+..+++|+.|++.+| .+..+++ ...+++|+.|++.+|+ +..+|
T Consensus 348 -----~l~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~n~-~~~~p 391 (466)
T 1o6v_A 348 -----SLANLTNINWLSAGHN-QISDLTP----LANLTRITQLGLNDQA-WTNAP 391 (466)
T ss_dssp -----GGTTCTTCCEEECCSS-CCCBCGG----GTTCTTCCEEECCCEE-EECCC
T ss_pred -----hhccCCCCCEEeCCCC-ccCccch----hhcCCCCCEEeccCCc-ccCCc
Confidence 1235666666666665 3444432 4456666666666653 44433
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=6.5e-27 Score=246.08 Aligned_cols=372 Identities=14% Similarity=0.125 Sum_probs=222.9
Q ss_pred EEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-C-CccccCCCCCcEEEeeCCCC
Q 007371 104 AISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-L-PSSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 104 ~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l-p~~~~~l~~L~~L~l~~~~~ 181 (606)
.++.+++.+..+|. -.++|++|++++|.+..++...|.++++|++|++++|.+.. + |..+.++++|++|++++|.+
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 34455555555555 22456666666666655544445666666666666665542 3 34556666666666666665
Q ss_pred CC--CcccCCCCCCCEeeecCCcCCc-cccc--ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371 182 KD--IAIVGQLKKLEILILARSTIKQ-LPLE--IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV 256 (606)
Q Consensus 182 ~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 256 (606)
.. |..++++++|++|++++|.++. +|.. ++++++|++|++++|...+..|...++++++|++|++++|.+....+
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 55 4556666666666666666653 2333 55666666666666554444444435566666666666665554433
Q ss_pred cCCCccchHhhccC--CCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371 257 EGGSNASLVELERL--TKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL 334 (606)
Q Consensus 257 ~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 334 (606)
..+..+ .+|+.|++..+.+..++..... +.....+..+++|+.|++++|.+.+..
T Consensus 172 --------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 172 --------EDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------------WEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp --------TTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------------HHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred --------hhhhccccccccccccccCcccccchhhcc---------------ccccccccccceeeeEecCCCcccccc
Confidence 233333 3555555555555443322100 000011234567888888888775543
Q ss_pred ccchhHHHh--hccccceecccccCcccccc----------cccCCCCCCCCcEEEeecCCCceEecccccccccccccc
Q 007371 335 QENDGTKML--LQRTEGLWLETLEGVQSVVH----------ELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRW 402 (606)
Q Consensus 335 ~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~----------~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 402 (606)
+ ..+... .++|+.|++.++........ .+. ....++|++|++++|.-.... +.....
T Consensus 229 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~--------~~~~~~ 297 (455)
T 3v47_A 229 A--KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK-GLEASGVKTCDLSKSKIFALL--------KSVFSH 297 (455)
T ss_dssp H--HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG-GGTTSCCCEEECCSSCCCEEC--------TTTTTT
T ss_pred h--hhhhccccccceeeEeeccccccccccchhhhccCcccccc-cccccCceEEEecCccccccc--------hhhccc
Confidence 2 223222 27788888887754332110 011 112468999999998643322 111344
Q ss_pred ccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEE
Q 007371 403 EGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEV 482 (606)
Q Consensus 403 ~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i 482 (606)
+++|+. |++.++. +..+.. ..+..+++|++|++++| .++.+.+ ..+..+++|++|++
T Consensus 298 l~~L~~-----------------L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L 354 (455)
T 3v47_A 298 FTDLEQ-----------------LTLAQNE-INKIDD---NAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDL 354 (455)
T ss_dssp CTTCCE-----------------EECTTSC-CCEECT---TTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEEC
T ss_pred CCCCCE-----------------EECCCCc-ccccCh---hHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEEC
Confidence 566666 9998875 333321 23467899999999995 6787744 44578999999999
Q ss_pred ecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCC
Q 007371 483 RNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCP 548 (606)
Q Consensus 483 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp 548 (606)
++|. +..++ +..+..+++|++|+++++ +++.++. .....+++|++|+++++|
T Consensus 355 s~N~-l~~~~----------~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 355 SYNH-IRALG----------DQSFLGLPNLKELALDTN-QLKSVPD--GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSSC-CCEEC----------TTTTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred CCCc-ccccC----------hhhccccccccEEECCCC-ccccCCH--hHhccCCcccEEEccCCC
Confidence 9975 55543 234567999999999997 7777765 445678999999998876
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=8.6e-27 Score=263.08 Aligned_cols=425 Identities=14% Similarity=0.065 Sum_probs=274.5
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCc-cC-CccccCCCCCcEEEeeCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFS-SL-PSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l-p~~~~~l~~L~~L~l~~~~ 180 (606)
+..+.+++++..+|. ..+++++|++++|.+..++...|.++++|++|++++|... .+ |..|+++++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 467788889999998 5679999999999988887666799999999999999544 45 7889999999999999999
Q ss_pred CCC--CcccCCCCCCCEeeecCCcCCc-cccc--ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 181 LKD--IAIVGQLKKLEILILARSTIKQ-LPLE--IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 181 ~~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++|...+..+...++++++|++|++++|.+....
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 987 7899999999999999999885 5554 8999999999999988766555333899999999999999887665
Q ss_pred ccCCCccchHhhccC--CCCCEEEEeeCCCCC-CCcccc-------ccCCcEEEEEeCCCCCCCCCCcccC---------
Q 007371 256 VEGGSNASLVELERL--TKLATLEIEVADAEI-LPPNFV-------SVELQRYRIRIGDESEDEFDPLLVK--------- 316 (606)
Q Consensus 256 ~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~l~~--------- 316 (606)
+ ..++.+ ++|+.|+++.|.+.. .|..+. ...|+.|++..+ ......+..+..
T Consensus 165 ~--------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 165 E--------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp S--------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSE
T ss_pred H--------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccc
Confidence 4 556555 899999999988743 333322 134888888433 222211111111
Q ss_pred -----------------------------CCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccC
Q 007371 317 -----------------------------SEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD 367 (606)
Q Consensus 317 -----------------------------~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 367 (606)
.++++.|++++|.+.+..+ ..+ ..+++|+.|++++|......+..+.
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~--~~~-~~l~~L~~L~L~~n~i~~~~~~~~~- 311 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS--RVF-ETLKDLKVLNLAYNKINKIADEAFY- 311 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS--CCS-SSCCCCCEEEEESCCCCEECTTTTT-
T ss_pred eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh--hhh-hcCCCCCEEECCCCcCCCCChHHhc-
Confidence 2455666666655432211 111 1235666666666544333333333
Q ss_pred CCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccc
Q 007371 368 GEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSF 447 (606)
Q Consensus 368 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 447 (606)
++++|++|++++|. ++.+. +.....+++|+. |++.++ .+..++.. .+..
T Consensus 312 --~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~-----------------L~L~~N-~i~~~~~~---~~~~ 360 (844)
T 3j0a_A 312 --GLDNLQVLNLSYNL-LGELY-------SSNFYGLPKVAY-----------------IDLQKN-HIAIIQDQ---TFKF 360 (844)
T ss_dssp --TCSSCCEEEEESCC-CSCCC-------SCSCSSCTTCCE-----------------EECCSC-CCCCCCSS---CSCS
T ss_pred --CCCCCCEEECCCCC-CCccC-------HHHhcCCCCCCE-----------------EECCCC-CCCccChh---hhcC
Confidence 56666666666653 22110 000223344444 777765 34443322 2456
Q ss_pred cCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccc---------cc--cCCCCCCCCccceEe
Q 007371 448 FNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELIN---------AD--KEHIGPLFPKLFKLR 516 (606)
Q Consensus 448 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~---------~~--~~~~~~~~~~L~~L~ 516 (606)
+++|++|+++++ .++.+ + .+++|+.|+++++. +..++....... .. ....+..+|+|+.|+
T Consensus 361 l~~L~~L~Ls~N-~l~~i-~-----~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 361 LEKLQTLDLRDN-ALTTI-H-----FIPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp CCCCCEEEEETC-CSCCC-S-----SCCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCC-CCCcc-c-----CCCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence 777888888774 56655 2 26777777777654 444432100000 00 000123678899999
Q ss_pred eccccccccccccccccccCCCcceEeeccCCCCcccc---------cCCccccccccChhh--------hhhhccccce
Q 007371 517 LTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI---------SNSTSVLHMTADNKE--------AQKLKSEKNL 579 (606)
Q Consensus 517 l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~---------~~~~~~~~l~~~~~~--------~~~l~~l~~l 579 (606)
++++ +++.++. ......+++|+.|+++++. ++..+ .....++.+++.+.. +..+++|+.|
T Consensus 433 Ls~N-~l~~~~~-~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 509 (844)
T 3j0a_A 433 LNQN-RFSSCSG-DQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509 (844)
T ss_dssp EESC-CCCCCCS-SSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred CCCC-ccccccc-ccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence 9887 4555433 1223447889999998874 43222 123456666666554 3466788888
Q ss_pred eeccc
Q 007371 580 LVADQ 584 (606)
Q Consensus 580 ~i~~~ 584 (606)
.++++
T Consensus 510 ~Ls~N 514 (844)
T 3j0a_A 510 SLNSN 514 (844)
T ss_dssp EEESC
T ss_pred ECCCC
Confidence 88887
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.6e-26 Score=249.50 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=121.2
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDY 178 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~ 178 (606)
...++++++++.+..+|.... +++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 344899999999988887554 7999999999999999877779999999999999999984 77899999999999999
Q ss_pred CCCCC-CcccCCCCCCCEeeecCCcCCccc--ccccCCCCCCEEecCCCcccccccHHHhhCCCCC--CEEEccCCCC
Q 007371 179 CRLKD-IAIVGQLKKLEILILARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL--EELYMGNSFS 251 (606)
Q Consensus 179 ~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L--~~L~l~~~~~ 251 (606)
|.++. |.. .+++|++|++++|.++.+| ..++++++|++|++++|..... . ++.+++| ++|++++|.+
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESSC
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeecccc
Confidence 99888 555 8999999999999998764 7899999999999999765432 2 4555666 9999998877
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.3e-26 Score=242.72 Aligned_cols=411 Identities=14% Similarity=0.117 Sum_probs=264.0
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARS 201 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~ 201 (606)
++++++++.+..+|..++ ++|++|++++|.++.++ ..+.++++|++|++++|.++. |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578899999999998763 89999999999999965 689999999999999999988 689999999999999999
Q ss_pred cCCcccccccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCC--CEEEE
Q 007371 202 TIKQLPLEIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKL--ATLEI 278 (606)
Q Consensus 202 ~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l 278 (606)
.++.+|.. .+++|++|++++|...+ .+|.. ++++++|++|++++|.+.. ..++.+++| ++|++
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~-----------~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK-----------SSVLPIAHLNISKVLL 145 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG-----------GGGGGGTTSCEEEEEE
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch-----------hhccccccceeeEEEe
Confidence 99999987 89999999999988665 46766 9999999999999998754 235666777 99999
Q ss_pred eeCCC---CCCCccccccCCcEEEEEeCCC--CCCCCCC------------------------------cccCCCCCcEE
Q 007371 279 EVADA---EILPPNFVSVELQRYRIRIGDE--SEDEFDP------------------------------LLVKSEAPRLM 323 (606)
Q Consensus 279 ~~~~~---~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~------------------------------~l~~~~~L~~L 323 (606)
.+|.+ ...|..+..-..+.+++..... ....... .+..+++|+.|
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L 225 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhc
Confidence 99887 2334433221112333321111 1111112 23444555555
Q ss_pred EecCcccccccccchhHH--HhhccccceecccccCcccccccccC--CCCCCCCcEEEeecCCCceEeccccccccccc
Q 007371 324 MLKGLEKVSILQENDGTK--MLLQRTEGLWLETLEGVQSVVHELDD--GEGFPRLKHLHVKSCSEILHIVGSVRREEGEL 399 (606)
Q Consensus 324 ~L~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 399 (606)
++++|.+.+.... .+. ...++|++|++++|.....+|..+.. .+.+++|+.++++++.. .+... ..
T Consensus 226 ~l~~~~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~--~~---- 295 (520)
T 2z7x_B 226 TLNNIETTWNSFI--RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS--YI---- 295 (520)
T ss_dssp EEEEEEEEHHHHH--HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTH--HH----
T ss_pred cccccccCHHHHH--HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchh--hh----
Confidence 5555443221110 111 11357888888888766567765510 03777777777777653 11000 00
Q ss_pred cccc--cccch-hhhhhhh---h-hhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccc-hhHH
Q 007371 400 RRWE--GNLNS-TIQKCYE---E-MIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIP-ANLL 471 (606)
Q Consensus 400 ~~~~--~~L~~-~i~~~~~---~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~~ 471 (606)
...+ ++|+. .+..+.. . ...+++|+.|++.++.--..++ ..++.+++|++|++++| +++.+.. ...+
T Consensus 296 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 370 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF----ENCGHLTELETLILQMN-QLKELSKIAEMT 370 (520)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT----TTCCCCSSCCEEECCSS-CCCBHHHHHHHH
T ss_pred hcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhh----hhhccCCCCCEEEccCC-ccCccccchHHH
Confidence 0000 11222 1111110 0 0234555559998875333233 23477899999999995 5776421 1346
Q ss_pred hhcCCCcEEEEecCCCcce-eeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCC
Q 007371 472 RCLNNLVYLEVRNCDSLEE-VLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDM 550 (606)
Q Consensus 472 ~~l~~L~~L~i~~c~~l~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L 550 (606)
..+++|++|++++|. +.. ++. .....+++|++|++++|.--..++. .. .++|+.|++++| ++
T Consensus 371 ~~l~~L~~L~Ls~N~-l~~~l~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~---~l--~~~L~~L~Ls~N-~l 433 (520)
T 2z7x_B 371 TQMKSLQQLDISQNS-VSYDEKK----------GDCSWTKSLLSLNMSSNILTDTIFR---CL--PPRIKVLDLHSN-KI 433 (520)
T ss_dssp TTCTTCCEEECCSSC-CBCCGGG----------CSCCCCTTCCEEECCSSCCCGGGGG---SC--CTTCCEEECCSS-CC
T ss_pred hhCCCCCEEECCCCc-CCccccc----------chhccCccCCEEECcCCCCCcchhh---hh--cccCCEEECCCC-cc
Confidence 789999999999876 444 442 1245689999999999853344433 11 279999999998 57
Q ss_pred cccccC---CccccccccChhh--------hhhhccccceeeccc
Q 007371 551 ETFISN---STSVLHMTADNKE--------AQKLKSEKNLLVADQ 584 (606)
Q Consensus 551 ~~l~~~---~~~~~~l~~~~~~--------~~~l~~l~~l~i~~~ 584 (606)
+.+|.. .+.++.+++.+.. +..+++|+.|.+++.
T Consensus 434 ~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 777743 2333444333322 344556666665543
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.2e-25 Score=234.81 Aligned_cols=326 Identities=19% Similarity=0.258 Sum_probs=249.6
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA 199 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~ 199 (606)
.+++++.|.+.++.+..++. +..+++|++|++++|.++.+|. ++++++|++|++++|.+.....++++++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECC
Confidence 56789999999998888876 5789999999999999999877 89999999999999999883339999999999999
Q ss_pred CCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371 200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE 279 (606)
Q Consensus 200 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 279 (606)
+|.++.+|. +.++++|++|++++|. ...++. ++.+++|++|+++++ .... ..++++++|++|+++
T Consensus 121 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~-~~~~----------~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 121 NNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQ-VTDL----------KPLANLTTLERLDIS 185 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEES-CCCC----------GGGTTCTTCCEEECC
T ss_pred CCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCc-ccCc----------hhhccCCCCCEEECc
Confidence 999998876 8999999999999976 445554 899999999998643 2221 348889999999999
Q ss_pred eCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcc
Q 007371 280 VADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQ 359 (606)
Q Consensus 280 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 359 (606)
+|.+..++. +..+++|+.|++++|.+.+..+ + ..+++|+.|++++|.. +
T Consensus 186 ~n~l~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~~----~-~~l~~L~~L~l~~n~l-~ 234 (466)
T 1o6v_A 186 SNKVSDISV-------------------------LAKLTNLESLIATNNQISDITP----L-GILTNLDELSLNGNQL-K 234 (466)
T ss_dssp SSCCCCCGG-------------------------GGGCTTCSEEECCSSCCCCCGG----G-GGCTTCCEEECCSSCC-C
T ss_pred CCcCCCChh-------------------------hccCCCCCEEEecCCccccccc----c-cccCCCCEEECCCCCc-c
Confidence 888765432 3556677777777766544322 1 2358889999988753 3
Q ss_pred cccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccccccccccc
Q 007371 360 SVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWH 439 (606)
Q Consensus 360 ~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 439 (606)
.++. ...+++|++|++++|. +..+. + ...+++|+. |.+.++. +..+
T Consensus 235 ~~~~----l~~l~~L~~L~l~~n~-l~~~~-------~--~~~l~~L~~-----------------L~l~~n~-l~~~-- 280 (466)
T 1o6v_A 235 DIGT----LASLTNLTDLDLANNQ-ISNLA-------P--LSGLTKLTE-----------------LKLGANQ-ISNI-- 280 (466)
T ss_dssp CCGG----GGGCTTCSEEECCSSC-CCCCG-------G--GTTCTTCSE-----------------EECCSSC-CCCC--
T ss_pred cchh----hhcCCCCCEEECCCCc-cccch-------h--hhcCCCCCE-----------------EECCCCc-cCcc--
Confidence 3432 3389999999999986 32221 1 344566666 9998874 3333
Q ss_pred CCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecc
Q 007371 440 GQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTD 519 (606)
Q Consensus 440 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 519 (606)
.+...+++|+.|++++| +++.+++ +..+++|++|++++|. +..++. +..+++|++|++++
T Consensus 281 ---~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~------------~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 281 ---SPLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP------------VSSLTKLQRLFFYN 340 (466)
T ss_dssp ---GGGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG------------GGGCTTCCEEECCS
T ss_pred ---ccccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh------------hccCccCCEeECCC
Confidence 23567899999999996 6887744 5789999999999985 555432 34789999999999
Q ss_pred ccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371 520 LPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI 554 (606)
Q Consensus 520 c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~ 554 (606)
| +++.++. ...+++|+.|++++|+ +..++
T Consensus 341 n-~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~ 369 (466)
T 1o6v_A 341 N-KVSDVSS----LANLTNINWLSAGHNQ-ISDLT 369 (466)
T ss_dssp S-CCCCCGG----GTTCTTCCEEECCSSC-CCBCG
T ss_pred C-ccCCchh----hccCCCCCEEeCCCCc-cCccc
Confidence 8 6777643 6779999999999985 54443
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=8e-26 Score=228.83 Aligned_cols=303 Identities=17% Similarity=0.212 Sum_probs=160.0
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA 199 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~ 199 (606)
.+++|++|.+.++....++. +..+++|++|++++|.++.+|. +..+++|++|++++|.++.++.+.++++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc
Confidence 33444444444444444433 3445555555555555555444 55555555555555555554445555555555555
Q ss_pred CCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371 200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE 279 (606)
Q Consensus 200 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 279 (606)
+|.++.+|. +..+++|++|++++|.....++. ++.+++|++|++++|.+.... .++.+++|++|+++
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~----------~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT----------PIANLTDLYSLSLN 185 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCG----------GGGGCTTCSEEECT
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCch----------hhccCCCCCEEEcc
Confidence 555555544 55555555555555544444433 555555555555555443332 14555555555555
Q ss_pred eCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcc
Q 007371 280 VADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQ 359 (606)
Q Consensus 280 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 359 (606)
+|.+..++.. ..+++|+.+++++|....... ...+++|++|++++|.. .
T Consensus 186 ~n~l~~~~~~-------------------------~~l~~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l-~ 234 (347)
T 4fmz_A 186 YNQIEDISPL-------------------------ASLTSLHYFTAYVNQITDITP-----VANMTRLNSLKIGNNKI-T 234 (347)
T ss_dssp TSCCCCCGGG-------------------------GGCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCC-C
T ss_pred CCcccccccc-------------------------cCCCccceeecccCCCCCCch-----hhcCCcCCEEEccCCcc-C
Confidence 5554443331 222223333333322211110 01124555555555432 2
Q ss_pred cccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccccccccccc
Q 007371 360 SVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWH 439 (606)
Q Consensus 360 ~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 439 (606)
.++. +. .+++|++|++++|. ++.+. . ...+++|+. |.+.++ .+..++
T Consensus 235 ~~~~-~~---~l~~L~~L~l~~n~-l~~~~-------~--~~~l~~L~~-----------------L~l~~n-~l~~~~- 281 (347)
T 4fmz_A 235 DLSP-LA---NLSQLTWLEIGTNQ-ISDIN-------A--VKDLTKLKM-----------------LNVGSN-QISDIS- 281 (347)
T ss_dssp CCGG-GT---TCTTCCEEECCSSC-CCCCG-------G--GTTCTTCCE-----------------EECCSS-CCCCCG-
T ss_pred CCcc-hh---cCCCCCEEECCCCc-cCCCh-------h--HhcCCCcCE-----------------EEccCC-ccCCCh-
Confidence 2222 22 56666666666653 22210 0 233444555 666665 333331
Q ss_pred CCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecc
Q 007371 440 GQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTD 519 (606)
Q Consensus 440 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 519 (606)
.+..+++|+.|++++| .++...+ ..+..+++|++|++++|+ ++.++. +..+++|++|++++
T Consensus 282 ----~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~------------~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 282 ----VLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP------------LASLSKMDSADFAN 342 (347)
T ss_dssp ----GGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG------------GGGCTTCSEESSSC
T ss_pred ----hhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC------------hhhhhccceeehhh
Confidence 2356788999999986 5666634 456789999999999987 555543 34689999999998
Q ss_pred cc
Q 007371 520 LP 521 (606)
Q Consensus 520 c~ 521 (606)
|+
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 84
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.6e-25 Score=245.73 Aligned_cols=152 Identities=23% Similarity=0.261 Sum_probs=124.4
Q ss_pred CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 176 (606)
..+++|++++|.+..++.. . .+++|++|++++|.+..++++.|.++++|++|+|++|.++.+|. .|.++.+|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4689999999999888764 3 89999999999999999998888999999999999999999765 6899999999999
Q ss_pred eCCCCCC-C-cccCCCCCCCEeeecCCcCC--cccccccCCCCCCEEecCCCcccccccHHHhhCCCCC----CEEEccC
Q 007371 177 DYCRLKD-I-AIVGQLKKLEILILARSTIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL----EELYMGN 248 (606)
Q Consensus 177 ~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L----~~L~l~~ 248 (606)
++|.++. + ..++++++|++|++++|.++ .+|..++.+++|++|++++|...+..+.. +..+.++ ..++++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhccc
Confidence 9999988 4 56899999999999999887 45788899999999999997655444433 4444333 2455555
Q ss_pred CCCC
Q 007371 249 SFSG 252 (606)
Q Consensus 249 ~~~~ 252 (606)
+.+.
T Consensus 211 n~l~ 214 (635)
T 4g8a_A 211 NPMN 214 (635)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 5443
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.2e-25 Score=242.73 Aligned_cols=386 Identities=14% Similarity=0.110 Sum_probs=229.3
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEe
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEIL 196 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L 196 (606)
.+...++++++++.+..+|..+ .++|++|++++|.++.++ ..++++++|++|++++|.++. |..++++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 4556689999999999999876 389999999999999965 689999999999999999988 6789999999999
Q ss_pred eecCCcCCcccccccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCE
Q 007371 197 ILARSTIKQLPLEIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLAT 275 (606)
Q Consensus 197 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 275 (606)
++++|.++.+|.. .+++|++|++++|...+ .+|.. ++++++|++|++++|.+.... +..+.++ +|++
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~~--------~~~l~~L-~L~~ 173 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQLD--------LLPVAHL-HLSC 173 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTTT--------TGGGTTS-CEEE
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCccccCc--------hhhhhhc-eeeE
Confidence 9999999999987 89999999999987554 34455 999999999999999875432 1334444 4499
Q ss_pred EEEeeCCC--C-CCCccccccCCcEEEEEeCCCCC--CCCCCcccCCCCCcEEEecCcc---------------------
Q 007371 276 LEIEVADA--E-ILPPNFVSVELQRYRIRIGDESE--DEFDPLLVKSEAPRLMMLKGLE--------------------- 329 (606)
Q Consensus 276 L~l~~~~~--~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~L~~~~--------------------- 329 (606)
|++++|.+ . ..|..+..-..+.+.+....... ......+..+++|+.+++++|.
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 99999987 3 33444332222333332222111 1111223344555555555542
Q ss_pred -------cccccc--cchhHHHhhccccceecccccCcccccccccCC--CCCCC-------------------------
Q 007371 330 -------KVSILQ--ENDGTKMLLQRTEGLWLETLEGVQSVVHELDDG--EGFPR------------------------- 373 (606)
Q Consensus 330 -------~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~--~~l~~------------------------- 373 (606)
..+... .+.+ ...++|++|++++|.....+|..+... ..++.
T Consensus 254 L~L~~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred EEecCCcCcHHHHHHHHHh--hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 111000 0000 012377777777776554555543100 12222
Q ss_pred -CcEEEeecCCCceEeccccccccccccccccccch-hhhh------hhhhhhccccccceeccccccccccccCCCCCc
Q 007371 374 -LKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQK------CYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPV 445 (606)
Q Consensus 374 -L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 445 (606)
|++|+++++.-.... ....+++|+. .+.. .+..+..+++|+.|.+.++ .+..++... ..+
T Consensus 332 ~L~~L~l~~n~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~ 399 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV----------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVA-LMT 399 (562)
T ss_dssp CCSEEEEESSCCCCCC----------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHH-HTT
T ss_pred cceEEEccCCCccccc----------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccch-hhh
Confidence 333333333211000 0134455555 1111 1222333444555666654 233222111 123
Q ss_pred cccCCccEEEeccCCCccc-ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCC-CccceEeecccccc
Q 007371 446 SFFNNLFDLVVDDCTNMSS-AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLF-PKLFKLRLTDLPKL 523 (606)
Q Consensus 446 ~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L 523 (606)
+.+++|++|+++++ +++. + |...+..+++|++|++++|.--..++ ..+ ++|+.|++++| ++
T Consensus 400 ~~l~~L~~L~l~~N-~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~--------------~~l~~~L~~L~L~~N-~l 462 (562)
T 3a79_B 400 KNMSSLETLDVSLN-SLNSHA-YDRTCAWAESILVLNLSSNMLTGSVF--------------RCLPPKVKVLDLHNN-RI 462 (562)
T ss_dssp TTCTTCCEEECTTS-CCBSCC-SSCCCCCCTTCCEEECCSSCCCGGGG--------------SSCCTTCSEEECCSS-CC
T ss_pred cCCCCCCEEECCCC-cCCCcc-ChhhhcCcccCCEEECCCCCCCcchh--------------hhhcCcCCEEECCCC-cC
Confidence 45566666666663 3444 3 33334456666666666654211111 123 57888888777 67
Q ss_pred ccccccccccccCCCcceEeeccCCCCccccc
Q 007371 524 KRFCNFTRNIIELPKLRYLTIENCPDMETFIS 555 (606)
Q Consensus 524 ~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~ 555 (606)
+.+|. ....+++|+.|+++++ +++.+|.
T Consensus 463 ~~ip~---~~~~l~~L~~L~L~~N-~l~~l~~ 490 (562)
T 3a79_B 463 MSIPK---DVTHLQALQELNVASN-QLKSVPD 490 (562)
T ss_dssp CCCCT---TTTSSCCCSEEECCSS-CCCCCCT
T ss_pred cccCh---hhcCCCCCCEEECCCC-CCCCCCH
Confidence 77765 4557788888888776 4777664
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=4.4e-26 Score=239.73 Aligned_cols=360 Identities=18% Similarity=0.146 Sum_probs=245.6
Q ss_pred CCCeEEEecCCCCccc-CCcc-cccccceeeccccccc-ccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEE
Q 007371 100 KDPIAISLTYGGIQVL-PERL-QCPCLELLHTEGDGSM-QVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLC 175 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l-~~~~-~l~~L~~L~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~ 175 (606)
+.+++|++++|.+..+ +... .+++|++|+++++... .++...|.++++|++|++++|.+.. .|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6789999999999776 4444 8999999999998765 6766667999999999999999988 588999999999999
Q ss_pred eeCCCCCC--Ccc--cCCCCCCCEeeecCCcCCcc-ccc-ccCCCCCCEEecCCCcccccccHHHhhCC--CCCCEEEcc
Q 007371 176 LDYCRLKD--IAI--VGQLKKLEILILARSTIKQL-PLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKL--SQLEELYMG 247 (606)
Q Consensus 176 l~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l--~~L~~L~l~ 247 (606)
+++|.+++ +.. ++++++|++|++++|.++.+ |.. ++++++|++|++++|...+..+.. +..+ .+|+.|+++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccc
Confidence 99999987 443 99999999999999999977 544 889999999999998876666655 6665 689999999
Q ss_pred CCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCC-CCcccc----ccCCcEEEEEeCCCCCCCCCCcccCCCCCcE
Q 007371 248 NSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEI-LPPNFV----SVELQRYRIRIGDESEDEFDPLLVKSEAPRL 322 (606)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 322 (606)
++.+.......-.......+..+++|++|++++|.+.. .|..+. ..+|+.|.+.........+ .......+.
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~- 265 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--GHTNFKDPD- 265 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--TCCSSCCCC-
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--chhhhccCc-
Confidence 99887665422111222234566889999999998753 333322 1567777663221111100 000000000
Q ss_pred EEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEecccccccccccccc
Q 007371 323 MMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRW 402 (606)
Q Consensus 323 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 402 (606)
.........++|+.|++++|......+..+. .+++|++|++++|. ++.+. +.....
T Consensus 266 -------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~-l~~~~-------~~~~~~ 321 (455)
T 3v47_A 266 -------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFS---HFTDLEQLTLAQNE-INKID-------DNAFWG 321 (455)
T ss_dssp -------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTT---TCTTCCEEECTTSC-CCEEC-------TTTTTT
T ss_pred -------------ccccccccccCceEEEecCccccccchhhcc---cCCCCCEEECCCCc-ccccC-------hhHhcC
Confidence 0000000125677777777766555555554 77788888887775 33221 000233
Q ss_pred ccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEE
Q 007371 403 EGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEV 482 (606)
Q Consensus 403 ~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i 482 (606)
+++|+. |++.++. +..+.. ..++.+++|++|+++++ +++.+.|. .+..+++|++|++
T Consensus 322 l~~L~~-----------------L~Ls~N~-l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L 378 (455)
T 3v47_A 322 LTHLLK-----------------LNLSQNF-LGSIDS---RMFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELAL 378 (455)
T ss_dssp CTTCCE-----------------EECCSSC-CCEECG---GGGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEEC
T ss_pred cccCCE-----------------EECCCCc-cCCcCh---hHhcCcccCCEEECCCC-cccccChh-hccccccccEEEC
Confidence 455555 7777763 333321 12456788888888885 67777453 3567888999999
Q ss_pred ecCCCcceeeccccccccccCCCCCCCCccceEeecccc
Q 007371 483 RNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLP 521 (606)
Q Consensus 483 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 521 (606)
+++. ++.++. ..+..+++|++|++++++
T Consensus 379 ~~N~-l~~~~~----------~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 379 DTNQ-LKSVPD----------GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSSC-CSCCCT----------TTTTTCTTCCEEECCSSC
T ss_pred CCCc-cccCCH----------hHhccCCcccEEEccCCC
Confidence 8854 665543 234568889999988774
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=8.9e-25 Score=224.75 Aligned_cols=306 Identities=13% Similarity=0.107 Sum_probs=211.3
Q ss_pred cccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCC
Q 007371 118 RLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLE 194 (606)
Q Consensus 118 ~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~ 194 (606)
...+++++.|.+.++.+..+|..+|..+++|++|++++|.++.++ ..++.+++|++|++++|.+.. |..++++++|+
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 346788899999988888899888888999999999999988854 478899999999999999887 46688999999
Q ss_pred EeeecCCcCCcccccc-cCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCC
Q 007371 195 ILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKL 273 (606)
Q Consensus 195 ~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 273 (606)
+|++++|.++.+|..+ +++++|++|++++|...+..|.. ++.+++|++|++++|.+.... ++.+++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-----------~~~l~~L 188 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVD-----------LSLIPSL 188 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBCC-----------GGGCTTC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCCCCCEEECCCCcCCccc-----------ccccccc
Confidence 9999999999888774 78999999999987655444444 888999999999988776532 5667888
Q ss_pred CEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecc
Q 007371 274 ATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLE 353 (606)
Q Consensus 274 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 353 (606)
+.|++++|.+..++. .++++.|++++|.+... +.. .+++|+.|+++
T Consensus 189 ~~L~l~~n~l~~~~~----------------------------~~~L~~L~l~~n~l~~~-~~~-----~~~~L~~L~l~ 234 (390)
T 3o6n_A 189 FHANVSYNLLSTLAI----------------------------PIAVEELDASHNSINVV-RGP-----VNVELTILKLQ 234 (390)
T ss_dssp SEEECCSSCCSEEEC----------------------------CSSCSEEECCSSCCCEE-ECC-----CCSSCCEEECC
T ss_pred ceeecccccccccCC----------------------------CCcceEEECCCCeeeec-ccc-----ccccccEEECC
Confidence 899888876653321 12344555555444221 111 12566666666
Q ss_pred cccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccccc
Q 007371 354 TLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPR 433 (606)
Q Consensus 354 ~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~ 433 (606)
+|.... .+ .+ +.+++|++|++++|. ++.+. +.....+++|+. |.+.++ .
T Consensus 235 ~n~l~~-~~-~l---~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~-----------------L~L~~n-~ 283 (390)
T 3o6n_A 235 HNNLTD-TA-WL---LNYPGLVEVDLSYNE-LEKIM-------YHPFVKMQRLER-----------------LYISNN-R 283 (390)
T ss_dssp SSCCCC-CG-GG---GGCTTCSEEECCSSC-CCEEE-------SGGGTTCSSCCE-----------------EECCSS-C
T ss_pred CCCCcc-cH-HH---cCCCCccEEECCCCc-CCCcC-------hhHccccccCCE-----------------EECCCC-c
Confidence 654332 22 23 266777777777764 32221 000233445555 776664 3
Q ss_pred ccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccc
Q 007371 434 LKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLF 513 (606)
Q Consensus 434 l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 513 (606)
+..++.. ...+++|++|++++| +++.+ |.. +..+++|++|++++|. ++.++ ...+++|+
T Consensus 284 l~~~~~~----~~~l~~L~~L~L~~n-~l~~~-~~~-~~~l~~L~~L~L~~N~-i~~~~-------------~~~~~~L~ 342 (390)
T 3o6n_A 284 LVALNLY----GQPIPTLKVLDLSHN-HLLHV-ERN-QPQFDRLENLYLDHNS-IVTLK-------------LSTHHTLK 342 (390)
T ss_dssp CCEEECS----SSCCTTCCEEECCSS-CCCCC-GGG-HHHHTTCSEEECCSSC-CCCCC-------------CCTTCCCS
T ss_pred CcccCcc----cCCCCCCCEEECCCC-cceec-Ccc-ccccCcCCEEECCCCc-cceeC-------------chhhccCC
Confidence 4444322 256788888888886 67776 433 4678888888888876 55442 24678888
Q ss_pred eEeecccc
Q 007371 514 KLRLTDLP 521 (606)
Q Consensus 514 ~L~l~~c~ 521 (606)
+|++++++
T Consensus 343 ~L~l~~N~ 350 (390)
T 3o6n_A 343 NLTLSHND 350 (390)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 88888764
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.2e-25 Score=232.88 Aligned_cols=261 Identities=15% Similarity=0.102 Sum_probs=167.9
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
+.+++|++++|.+..+|....+++|++|++++|.+..++ +..+++|++|++++|.++.+| ++++++|++|++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence 777888888887776765447777777777777776665 466777777777777777764 677777777777777
Q ss_pred CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
.++..+ ++++++|++|++++|.++.+| ++.+++|++|++++|...+.++ ++.+++|++|++++|.+...+
T Consensus 117 ~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---- 186 (457)
T 3bz5_A 117 KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---- 186 (457)
T ss_dssp CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC----
T ss_pred cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec----
Confidence 776632 677777777777777777664 6677777777777776666663 567777777777777665431
Q ss_pred CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchh
Q 007371 260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG 339 (606)
Q Consensus 260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 339 (606)
++.+++|+.|++++|.+..++ +..+++|+.|++++|.+.+ ++
T Consensus 187 -------l~~l~~L~~L~l~~N~l~~~~--------------------------l~~l~~L~~L~Ls~N~l~~-ip---- 228 (457)
T 3bz5_A 187 -------VSQNKLLNRLNCDTNNITKLD--------------------------LNQNIQLTFLDCSSNKLTE-ID---- 228 (457)
T ss_dssp -------CTTCTTCCEEECCSSCCSCCC--------------------------CTTCTTCSEEECCSSCCSC-CC----
T ss_pred -------cccCCCCCEEECcCCcCCeec--------------------------cccCCCCCEEECcCCcccc-cC----
Confidence 456667777777766655331 3455666666666665543 22
Q ss_pred HHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhc
Q 007371 340 TKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIG 419 (606)
Q Consensus 340 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~ 419 (606)
+. .+++|+.|++++|.... ++ .+.+++|+.|.++++ +|+.
T Consensus 229 ~~-~l~~L~~L~l~~N~l~~-~~-----~~~l~~L~~L~l~~n----------------------~L~~----------- 268 (457)
T 3bz5_A 229 VT-PLTQLTYFDCSVNPLTE-LD-----VSTLSKLTTLHCIQT----------------------DLLE----------- 268 (457)
T ss_dssp CT-TCTTCSEEECCSSCCSC-CC-----CTTCTTCCEEECTTC----------------------CCSC-----------
T ss_pred cc-ccCCCCEEEeeCCcCCC-cC-----HHHCCCCCEEeccCC----------------------CCCE-----------
Confidence 11 23566666666653322 22 225566666655432 2233
Q ss_pred cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccc
Q 007371 420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSA 465 (606)
Q Consensus 420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 465 (606)
|++.++..+..++ .+.+++|+.|++++|+.+..+
T Consensus 269 ------L~l~~n~~~~~~~------~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 269 ------IDLTHNTQLIYFQ------AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp ------CCCTTCTTCCEEE------CTTCTTCCCCCCTTCTTCCEE
T ss_pred ------EECCCCccCCccc------ccccccCCEEECCCCccccee
Confidence 6666666554443 245677777777777666655
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.3e-25 Score=231.35 Aligned_cols=298 Identities=20% Similarity=0.150 Sum_probs=153.6
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIK 204 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~ 204 (606)
++|+++++....+|. ..++|++|++++|.++.+|.. +.+|++|++++|.++..+.+ .++|++|++++|.++
T Consensus 74 ~~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 74 HELELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLE 144 (454)
T ss_dssp SEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCS
T ss_pred CEEEecCCccccCCC----CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCC
Confidence 444444444444433 124455555555555554432 24555555555554441111 145666666666555
Q ss_pred cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 205 QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 205 ~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
.+| .++++++|++|++++|... .+|.. ..+|++|++++|.+... ..++++++|++|++++|.+.
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~l----------~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEEL----------PELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSC----------CCCTTCTTCCEEECCSSCCS
T ss_pred CCc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCcC----------ccccCCCCCCEEECCCCcCC
Confidence 555 3556666666666655432 34432 23566666666555432 13566666666666666666
Q ss_pred CCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCccccccc
Q 007371 285 ILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHE 364 (606)
Q Consensus 285 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 364 (606)
.+|... .+|+.|++..+. .. .++ .+..+++|+.|++++|.+.+ ++. .+++|+.|++++|. ...+|.
T Consensus 209 ~l~~~~--~~L~~L~l~~n~-l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~------~~~~L~~L~l~~N~-l~~l~~- 274 (454)
T 1jl5_A 209 KLPDLP--LSLESIVAGNNI-LE-ELP-ELQNLPFLTTIYADNNLLKT-LPD------LPPSLEALNVRDNY-LTDLPE- 274 (454)
T ss_dssp SCCCCC--TTCCEEECCSSC-CS-SCC-CCTTCTTCCEEECCSSCCSS-CCS------CCTTCCEEECCSSC-CSCCCC-
T ss_pred cCCCCc--CcccEEECcCCc-CC-ccc-ccCCCCCCCEEECCCCcCCc-ccc------cccccCEEECCCCc-ccccCc-
Confidence 555432 466666663322 22 233 35666666777776665533 211 12566666666654 233433
Q ss_pred ccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCC
Q 007371 365 LDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALP 444 (606)
Q Consensus 365 l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 444 (606)
.+++|++|++++|. ++.+ +...++|+. |++.++. +..++.
T Consensus 275 -----~~~~L~~L~ls~N~-l~~l-----------~~~~~~L~~-----------------L~l~~N~-l~~i~~----- 314 (454)
T 1jl5_A 275 -----LPQSLTFLDVSENI-FSGL-----------SELPPNLYY-----------------LNASSNE-IRSLCD----- 314 (454)
T ss_dssp -----CCTTCCEEECCSSC-CSEE-----------SCCCTTCCE-----------------EECCSSC-CSEECC-----
T ss_pred -----ccCcCCEEECcCCc-cCcc-----------cCcCCcCCE-----------------EECcCCc-CCcccC-----
Confidence 23566677766664 3322 222245555 6666542 222211
Q ss_pred ccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccc
Q 007371 445 VSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLK 524 (606)
Q Consensus 445 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 524 (606)
..++|++|++++ ++++.+ |. .+++|++|++++|. ++.++. .+++|++|+++++ .++
T Consensus 315 --~~~~L~~L~Ls~-N~l~~l-p~----~~~~L~~L~L~~N~-l~~lp~--------------~l~~L~~L~L~~N-~l~ 370 (454)
T 1jl5_A 315 --LPPSLEELNVSN-NKLIEL-PA----LPPRLERLIASFNH-LAEVPE--------------LPQNLKQLHVEYN-PLR 370 (454)
T ss_dssp --CCTTCCEEECCS-SCCSCC-CC----CCTTCCEEECCSSC-CSCCCC--------------CCTTCCEEECCSS-CCS
T ss_pred --CcCcCCEEECCC-Cccccc-cc----cCCcCCEEECCCCc-cccccc--------------hhhhccEEECCCC-CCC
Confidence 114677777777 356665 32 24677777777653 554432 3567777777766 444
Q ss_pred c
Q 007371 525 R 525 (606)
Q Consensus 525 ~ 525 (606)
.
T Consensus 371 ~ 371 (454)
T 1jl5_A 371 E 371 (454)
T ss_dssp S
T ss_pred c
Confidence 4
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.9e-25 Score=233.84 Aligned_cols=313 Identities=18% Similarity=0.170 Sum_probs=175.7
Q ss_pred eeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCc
Q 007371 126 LLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARST 202 (606)
Q Consensus 126 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~ 202 (606)
.++..++....+|..+ .+++++|++++|.++.+ |..|.++++|++|++++|.++. |..+.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3444444455555433 34555666666655553 3455556666666666665555 4555566666666666665
Q ss_pred CCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371 203 IKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA 281 (606)
Q Consensus 203 l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 281 (606)
++.+|.. +.++++|++|++++|......+.. +.++++|++|++++|.+....+ ..++.+++|++|++++|
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISH--------RAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECT--------TSSTTCTTCCEEEEESC
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCccceeCh--------hhccCCCCCCEEECCCC
Confidence 5555543 455566666666655443333333 5556666666666555544433 34555556666666655
Q ss_pred CCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371 282 DAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV 361 (606)
Q Consensus 282 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 361 (606)
.+..++... +..+++|+.|++++|.+..... ..+ ..+++|+.|++++|.....+
T Consensus 163 ~l~~~~~~~-----------------------l~~l~~L~~L~l~~n~i~~~~~--~~~-~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 163 NLTSIPTEA-----------------------LSHLHGLIVLRLRHLNINAIRD--YSF-KRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp CCSSCCHHH-----------------------HTTCTTCCEEEEESCCCCEECT--TCS-CSCTTCCEEEEECCTTCCEE
T ss_pred cCcccChhH-----------------------hcccCCCcEEeCCCCcCcEeCh--hhc-ccCcccceeeCCCCcccccc
Confidence 554444321 1222333333333333221110 001 11367888888888777777
Q ss_pred cccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCC
Q 007371 362 VHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQ 441 (606)
Q Consensus 362 ~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 441 (606)
+.... ...+|++|++++|. ++.+.. .....+++|+. |++.++. +..++..
T Consensus 217 ~~~~~---~~~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~-----------------L~Ls~n~-l~~~~~~- 266 (477)
T 2id5_A 217 TPNCL---YGLNLTSLSITHCN-LTAVPY-------LAVRHLVYLRF-----------------LNLSYNP-ISTIEGS- 266 (477)
T ss_dssp CTTTT---TTCCCSEEEEESSC-CCSCCH-------HHHTTCTTCCE-----------------EECCSSC-CCEECTT-
T ss_pred Ccccc---cCccccEEECcCCc-ccccCH-------HHhcCccccCe-----------------eECCCCc-CCccChh-
Confidence 76554 45689999998884 333210 00234555555 8888764 4444322
Q ss_pred CCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecccc
Q 007371 442 ALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLP 521 (606)
Q Consensus 442 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 521 (606)
.+..+++|+.|++.++ +++.+.+. .+..+++|++|+++++. ++.++. ..+..+++|++|++.++|
T Consensus 267 --~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~----------~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 267 --MLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGNQ-LTTLEE----------SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp --SCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSSC-CSCCCG----------GGBSCGGGCCEEECCSSC
T ss_pred --hccccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCCc-CceeCH----------hHcCCCcccCEEEccCCC
Confidence 2467788888888884 67777443 34678888888888864 665543 133467888888888775
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.8e-24 Score=237.35 Aligned_cols=151 Identities=18% Similarity=0.204 Sum_probs=128.8
Q ss_pred EEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCC
Q 007371 104 AISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLK 182 (606)
Q Consensus 104 ~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~ 182 (606)
..+-++.++..+|..+. +++++|++++|.+..++...|.++++|++|++++|.++.+|. .|+++++|++|++++|+++
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 34445556677776442 379999999999999998888999999999999999999654 6899999999999999999
Q ss_pred C-C-cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371 183 D-I-AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKV 256 (606)
Q Consensus 183 ~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 256 (606)
. | ..+.++++|++|++++|+++.+|. .++++++|++|++++|.... ..|.. ++.+++|++|++++|.+....+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccccc
Confidence 8 4 678999999999999999998876 48999999999999987644 35655 8999999999999998876654
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-24 Score=232.71 Aligned_cols=305 Identities=13% Similarity=0.106 Sum_probs=204.7
Q ss_pred ccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCE
Q 007371 119 LQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEI 195 (606)
Q Consensus 119 ~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~ 195 (606)
..+.+++.+.+.++.+..+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.++. |..++++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35678888888888888888888888999999999999888844 488889999999999998887 456788999999
Q ss_pred eeecCCcCCcccccc-cCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCC
Q 007371 196 LILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLA 274 (606)
Q Consensus 196 L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 274 (606)
|++++|.++.+|..+ +++++|++|++++|...+..|.. ++.+++|++|++++|.+.... ++.+++|+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-----------~~~l~~L~ 195 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVD-----------LSLIPSLF 195 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBCC-----------GGGCTTCS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCcC-----------hhhhhhhh
Confidence 999999888888764 78899999999987765555544 888999999999888776542 45677888
Q ss_pred EEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceeccc
Q 007371 275 TLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLET 354 (606)
Q Consensus 275 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 354 (606)
.|++++|.+..++. ..+|+.|++++|.+... +.. .+++|+.|++++
T Consensus 196 ~L~l~~n~l~~l~~----------------------------~~~L~~L~ls~n~l~~~-~~~-----~~~~L~~L~L~~ 241 (597)
T 3oja_B 196 HANVSYNLLSTLAI----------------------------PIAVEELDASHNSINVV-RGP-----VNVELTILKLQH 241 (597)
T ss_dssp EEECCSSCCSEEEC----------------------------CTTCSEEECCSSCCCEE-ECS-----CCSCCCEEECCS
T ss_pred hhhcccCccccccC----------------------------CchhheeeccCCccccc-ccc-----cCCCCCEEECCC
Confidence 88888876653321 12344444444433211 110 124556666655
Q ss_pred ccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccc
Q 007371 355 LEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRL 434 (606)
Q Consensus 355 ~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l 434 (606)
|.... . ..+. .+++|++|++++|. +..+. +.....+++|+. |.+.++ .+
T Consensus 242 n~l~~-~-~~l~---~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~-----------------L~Ls~N-~l 290 (597)
T 3oja_B 242 NNLTD-T-AWLL---NYPGLVEVDLSYNE-LEKIM-------YHPFVKMQRLER-----------------LYISNN-RL 290 (597)
T ss_dssp SCCCC-C-GGGG---GCTTCSEEECCSSC-CCEEE-------SGGGTTCSSCCE-----------------EECTTS-CC
T ss_pred CCCCC-C-hhhc---cCCCCCEEECCCCc-cCCCC-------HHHhcCccCCCE-----------------EECCCC-CC
Confidence 53322 1 2222 56666666666654 22221 000233444444 666654 33
Q ss_pred cccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccce
Q 007371 435 KEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFK 514 (606)
Q Consensus 435 ~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ 514 (606)
..++.. ...+++|+.|++++| .+..+ |.. +..+++|++|++++|. +..++ ...+++|+.
T Consensus 291 ~~l~~~----~~~l~~L~~L~Ls~N-~l~~i-~~~-~~~l~~L~~L~L~~N~-l~~~~-------------~~~~~~L~~ 349 (597)
T 3oja_B 291 VALNLY----GQPIPTLKVLDLSHN-HLLHV-ERN-QPQFDRLENLYLDHNS-IVTLK-------------LSTHHTLKN 349 (597)
T ss_dssp CEEECS----SSCCTTCCEEECCSS-CCCCC-GGG-HHHHTTCSEEECCSSC-CCCCC-------------CCTTCCCSE
T ss_pred CCCCcc----cccCCCCcEEECCCC-CCCcc-Ccc-cccCCCCCEEECCCCC-CCCcC-------------hhhcCCCCE
Confidence 434322 255778888888885 56666 433 4678888888888876 44432 346788888
Q ss_pred Eeecccc
Q 007371 515 LRLTDLP 521 (606)
Q Consensus 515 L~l~~c~ 521 (606)
|+++++|
T Consensus 350 L~l~~N~ 356 (597)
T 3oja_B 350 LTLSHND 356 (597)
T ss_dssp EECCSSC
T ss_pred EEeeCCC
Confidence 8888775
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=4.6e-24 Score=225.60 Aligned_cols=263 Identities=18% Similarity=0.102 Sum_probs=180.4
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~ 181 (606)
+.++.+++.+..+|... .+++++|++++|.+..++...|.++++|++|++++|.++. .|..++++++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 46777777888887654 3588999999999888877777899999999999999988 477899999999999999998
Q ss_pred CC-C-cccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371 182 KD-I-AIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG 258 (606)
Q Consensus 182 ~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 258 (606)
+. | ..+.++++|++|++++|.+..+ |..+.++++|++|++++|......+.. ++.+++|++|++++|.+...+.
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-- 169 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPT-- 169 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCH--
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccCh--
Confidence 88 4 5678999999999999988865 567889999999999997655544544 8899999999999998877664
Q ss_pred CCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccccc
Q 007371 259 GSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQE 336 (606)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 336 (606)
..+.++++|+.|++.+|.+..++.... .++|+.|++..... ...++.......+|+.|++++|.+.. +
T Consensus 170 ------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~-~-- 239 (477)
T 2id5_A 170 ------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY-LDTMTPNCLYGLNLTSLSITHCNLTA-V-- 239 (477)
T ss_dssp ------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT-CCEECTTTTTTCCCSEEEEESSCCCS-C--
T ss_pred ------hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc-ccccCcccccCccccEEECcCCcccc-c--
Confidence 678899999999999988876654321 15666666633221 11222222233355555555544421 1
Q ss_pred chhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecC
Q 007371 337 NDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSC 382 (606)
Q Consensus 337 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c 382 (606)
+......+++|+.|++++|......+..+. .+++|++|++++|
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n 282 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLH---ELLRLQEIQLVGG 282 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCT---TCTTCCEEECCSS
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhcc---ccccCCEEECCCC
Confidence 111112234555555555432222222222 4555555555554
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-24 Score=220.62 Aligned_cols=300 Identities=16% Similarity=0.135 Sum_probs=229.9
Q ss_pred CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l 176 (606)
..+++++++++.+..+|... .+++|++|+++++.+..++...|..+++|++|++++|.+..+ |..++++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 78999999999999999864 799999999999999988887789999999999999999985 556899999999999
Q ss_pred eCCCCCC-Ccc-cCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371 177 DYCRLKD-IAI-VGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW 253 (606)
Q Consensus 177 ~~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 253 (606)
++|.++. |.. ++++++|++|++++|.++.++ ..++.+++|++|++++|... .++ ++.+++|++|++++|.+..
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeecccccccc
Confidence 9999998 544 689999999999999999775 45899999999999997644 444 6789999999999987643
Q ss_pred ccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371 254 EKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI 333 (606)
Q Consensus 254 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 333 (606)
+....+|++|++++|.+..+|... .++|+.|++++|.+.+.
T Consensus 201 -------------~~~~~~L~~L~l~~n~l~~~~~~~--------------------------~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 201 -------------LAIPIAVEELDASHNSINVVRGPV--------------------------NVELTILKLQHNNLTDT 241 (390)
T ss_dssp -------------EECCSSCSEEECCSSCCCEEECCC--------------------------CSSCCEEECCSSCCCCC
T ss_pred -------------cCCCCcceEEECCCCeeeeccccc--------------------------cccccEEECCCCCCccc
Confidence 344568999999999887654431 23556666666555332
Q ss_pred cccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhh
Q 007371 334 LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKC 413 (606)
Q Consensus 334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~ 413 (606)
.++. .+++|++|++++|......|..+. .+++|++|++++|. ++.+.. ....+|+|+.
T Consensus 242 ----~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~----- 299 (390)
T 3o6n_A 242 ----AWLL-NYPGLVEVDLSYNELEKIMYHPFV---KMQRLERLYISNNR-LVALNL--------YGQPIPTLKV----- 299 (390)
T ss_dssp ----GGGG-GCTTCSEEECCSSCCCEEESGGGT---TCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCE-----
T ss_pred ----HHHc-CCCCccEEECCCCcCCCcChhHcc---ccccCCEEECCCCc-CcccCc--------ccCCCCCCCE-----
Confidence 2222 247788888887765554455555 78888888888874 444311 0344667777
Q ss_pred hhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCC
Q 007371 414 YEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCD 486 (606)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 486 (606)
|++.++ .+..++.. ...+++|++|+++++ .++.+ + ...+++|++|++++++
T Consensus 300 ------------L~L~~n-~l~~~~~~----~~~l~~L~~L~L~~N-~i~~~-~---~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 300 ------------LDLSHN-HLLHVERN----QPQFDRLENLYLDHN-SIVTL-K---LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ------------EECCSS-CCCCCGGG----HHHHTTCSEEECCSS-CCCCC-C---CCTTCCCSEEECCSSC
T ss_pred ------------EECCCC-cceecCcc----ccccCcCCEEECCCC-cccee-C---chhhccCCEEEcCCCC
Confidence 888876 45444422 367789999999985 57776 3 3578899999998865
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=8.4e-24 Score=213.93 Aligned_cols=301 Identities=19% Similarity=0.156 Sum_probs=227.0
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
+.+++|+++++.+..++....+++|++|++++|.+..++. +..+++|++|++++|.++.+| .+.++++|++|++++|
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED 120 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC
Confidence 8899999999999999886699999999999999998887 689999999999999999876 5899999999999999
Q ss_pred CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
.+...+.+..+++|++|++++|.....+..+..+++|++|++++|.. ..++. ++.+++|++|++++|.+....
T Consensus 121 ~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~--~~~l~~L~~L~l~~n~l~~~~---- 193 (347)
T 4fmz_A 121 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP--IANLTDLYSLSLNYNQIEDIS---- 193 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECTTSCCCCCG----
T ss_pred cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh--hccCCCCCEEEccCCcccccc----
Confidence 99985449999999999999995554445699999999999999764 44444 789999999999999876543
Q ss_pred CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchh
Q 007371 260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG 339 (606)
Q Consensus 260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 339 (606)
.+..+++|+.|++.+|.+..++.. ..+++|+.|++++|.+.....
T Consensus 194 ------~~~~l~~L~~L~l~~n~l~~~~~~-------------------------~~~~~L~~L~l~~n~l~~~~~---- 238 (347)
T 4fmz_A 194 ------PLASLTSLHYFTAYVNQITDITPV-------------------------ANMTRLNSLKIGNNKITDLSP---- 238 (347)
T ss_dssp ------GGGGCTTCCEEECCSSCCCCCGGG-------------------------GGCTTCCEEECCSSCCCCCGG----
T ss_pred ------cccCCCccceeecccCCCCCCchh-------------------------hcCCcCCEEEccCCccCCCcc----
Confidence 378899999999999888765442 344455555555554422211
Q ss_pred HHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhc
Q 007371 340 TKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIG 419 (606)
Q Consensus 340 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~ 419 (606)
...+++|++|++++|. .+.++. ...+++|++|++++|. ++.+. . ...+++|+.
T Consensus 239 -~~~l~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n~-l~~~~-------~--~~~l~~L~~----------- 291 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQ-ISDINA----VKDLTKLKMLNVGSNQ-ISDIS-------V--LNNLSQLNS----------- 291 (347)
T ss_dssp -GTTCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSSC-CCCCG-------G--GGGCTTCSE-----------
T ss_pred -hhcCCCCCEEECCCCc-cCCChh----HhcCCCcCEEEccCCc-cCCCh-------h--hcCCCCCCE-----------
Confidence 1124677777777663 333332 3377888888888874 33321 0 344566666
Q ss_pred cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCC
Q 007371 420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCD 486 (606)
Q Consensus 420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 486 (606)
|++.+|.--...+ ..++.+++|++|++++|+ ++.++| +..+++|++|++++|+
T Consensus 292 ------L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 292 ------LFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp ------EECCSSCCCGGGH----HHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred ------EECcCCcCCCcCh----hHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 8888775322222 123567899999999974 777755 5789999999999876
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.9e-23 Score=216.68 Aligned_cols=342 Identities=18% Similarity=0.129 Sum_probs=247.8
Q ss_pred cccccCCCCChHhHHHHhhhhh-cCCCC-hhhHHH----HHhhhccCCCeEEEecCCCCcccCCcccccccceeeccccc
Q 007371 60 QKNFPIDALPRKEALQLFEKRM-FNIPN-VADLEK----KMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDG 133 (606)
Q Consensus 60 ~~~~~l~~L~~~~~~~Lf~~~~-~~~~~-~~~l~~----~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~ 133 (606)
..+-.+..++..+.+.+..... +..|. .+.+.. .+.+.....+++|++++|.+..+|.. .++|++|++++|.
T Consensus 25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~ 102 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNS 102 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSC
T ss_pred hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCc
Confidence 3455678888889998888754 34442 222221 11222226789999999999888774 4789999999999
Q ss_pred ccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCC
Q 007371 134 SMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQL 213 (606)
Q Consensus 134 ~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L 213 (606)
+..+|. .+++|++|++++|.++.+|... ++|++|++++|.++..+.++++++|++|++++|.++.+|..+
T Consensus 103 l~~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~--- 172 (454)
T 1jl5_A 103 LTELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP--- 172 (454)
T ss_dssp CSSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---
T ss_pred CCcccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---
Confidence 888875 2589999999999998876532 689999999999988337999999999999999999988654
Q ss_pred CCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcccccc
Q 007371 214 TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSV 293 (606)
Q Consensus 214 ~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 293 (606)
.+|++|++++|... .+| . ++++++|++|++++|.+...+. ..++|++|++++|.+..+|.....+
T Consensus 173 ~~L~~L~L~~n~l~-~l~-~-~~~l~~L~~L~l~~N~l~~l~~------------~~~~L~~L~l~~n~l~~lp~~~~l~ 237 (454)
T 1jl5_A 173 PSLEFIAAGNNQLE-ELP-E-LQNLPFLTAIYADNNSLKKLPD------------LPLSLESIVAGNNILEELPELQNLP 237 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-C-CTTCTTCCEEECCSSCCSSCCC------------CCTTCCEEECCSSCCSSCCCCTTCT
T ss_pred ccccEEECcCCcCC-cCc-c-ccCCCCCCEEECCCCcCCcCCC------------CcCcccEEECcCCcCCcccccCCCC
Confidence 58999999998654 477 4 8999999999999998876442 1248999999999999888643449
Q ss_pred CCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCC
Q 007371 294 ELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPR 373 (606)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~ 373 (606)
+|+.|++..+. .. .++. ..++|+.|++++|.+.+ ++. .+++|+.|++++|. .+.++. ..++
T Consensus 238 ~L~~L~l~~N~-l~-~l~~---~~~~L~~L~l~~N~l~~-l~~------~~~~L~~L~ls~N~-l~~l~~------~~~~ 298 (454)
T 1jl5_A 238 FLTTIYADNNL-LK-TLPD---LPPSLEALNVRDNYLTD-LPE------LPQSLTFLDVSENI-FSGLSE------LPPN 298 (454)
T ss_dssp TCCEEECCSSC-CS-SCCS---CCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSSC-CSEESC------CCTT
T ss_pred CCCEEECCCCc-CC-cccc---cccccCEEECCCCcccc-cCc------ccCcCCEEECcCCc-cCcccC------cCCc
Confidence 99999995432 22 2222 24789999999988754 322 13789999999975 333433 2369
Q ss_pred CcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccE
Q 007371 374 LKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFD 453 (606)
Q Consensus 374 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 453 (606)
|++|++++|. ++.+ ....++|+. |++.++ .+..++. .+++|++
T Consensus 299 L~~L~l~~N~-l~~i-----------~~~~~~L~~-----------------L~Ls~N-~l~~lp~-------~~~~L~~ 341 (454)
T 1jl5_A 299 LYYLNASSNE-IRSL-----------CDLPPSLEE-----------------LNVSNN-KLIELPA-------LPPRLER 341 (454)
T ss_dssp CCEEECCSSC-CSEE-----------CCCCTTCCE-----------------EECCSS-CCSCCCC-------CCTTCCE
T ss_pred CCEEECcCCc-CCcc-----------cCCcCcCCE-----------------EECCCC-ccccccc-------cCCcCCE
Confidence 9999999885 3333 222357777 999885 3554432 3589999
Q ss_pred EEeccCCCcccccchhHHhhcCCCcEEEEecCCCccee
Q 007371 454 LVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEV 491 (606)
Q Consensus 454 L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l 491 (606)
|++++| +++.+ |. .+++|++|+++++. +..+
T Consensus 342 L~L~~N-~l~~l-p~----~l~~L~~L~L~~N~-l~~l 372 (454)
T 1jl5_A 342 LIASFN-HLAEV-PE----LPQNLKQLHVEYNP-LREF 372 (454)
T ss_dssp EECCSS-CCSCC-CC----CCTTCCEEECCSSC-CSSC
T ss_pred EECCCC-ccccc-cc----hhhhccEEECCCCC-CCcC
Confidence 999995 78887 43 47999999999865 5543
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.6e-23 Score=218.88 Aligned_cols=289 Identities=16% Similarity=0.122 Sum_probs=230.3
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
+.+++|++++|.+..++ ...+++|++|++++|.+..++ +.++++|++|++++|.++.+| ++++++|++|++++|
T Consensus 64 ~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTS
T ss_pred CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCC
Confidence 88999999999998886 458999999999999988885 588999999999999999986 899999999999999
Q ss_pred CCCCCcccCCCCCCCEeeecCC-cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371 180 RLKDIAIVGQLKKLEILILARS-TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG 258 (606)
Q Consensus 180 ~~~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 258 (606)
.++.. .++++++|++|++++| .+..+ .++.+++|++|++++|.. ..+| ++.+++|++|++++|.+...
T Consensus 138 ~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~---l~~l~~L~~L~l~~N~l~~~---- 206 (457)
T 3bz5_A 138 TLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD---VSQNKLLNRLNCDTNNITKL---- 206 (457)
T ss_dssp CCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC---CTTCTTCCEEECCSSCCSCC----
T ss_pred cccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceec---cccCCCCCEEECcCCcCCee----
Confidence 99884 3889999999999999 55566 478999999999999764 4466 78999999999999987654
Q ss_pred CCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccch
Q 007371 259 GSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEND 338 (606)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 338 (606)
.++.+++|+.|++++|.+..+| ....++|+.|++.... ... . ....+++|+.|+++.
T Consensus 207 -------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~-l~~-~--~~~~l~~L~~L~l~~----------- 263 (457)
T 3bz5_A 207 -------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNP-LTE-L--DVSTLSKLTTLHCIQ----------- 263 (457)
T ss_dssp -------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSC-C--CCTTCTTCCEEECTT-----------
T ss_pred -------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCc-CCC-c--CHHHCCCCCEEeccC-----------
Confidence 2678899999999999998887 2234888888884332 222 1 246677888888776
Q ss_pred hHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhh
Q 007371 339 GTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMI 418 (606)
Q Consensus 339 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~ 418 (606)
.+|+.|++++|.....+| .+.+++|+.|++++|+.+..+ +..+++|+.
T Consensus 264 ------n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l-----------~~~~~~L~~---------- 311 (457)
T 3bz5_A 264 ------TDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLL-----------DCQAAGITE---------- 311 (457)
T ss_dssp ------CCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEE-----------ECTTCCCSC----------
T ss_pred ------CCCCEEECCCCccCCccc-----ccccccCCEEECCCCccccee-----------ccCCCcceE----------
Confidence 578889999888777665 337899999999999877766 444566666
Q ss_pred ccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcce
Q 007371 419 GFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEE 490 (606)
Q Consensus 419 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 490 (606)
|.+.++ ++|++|++++ ++++.+ + +.++++|++|+++++. +..
T Consensus 312 -------L~l~~~-----------------~~L~~L~L~~-N~l~~l-~---l~~l~~L~~L~l~~N~-l~~ 353 (457)
T 3bz5_A 312 -------LDLSQN-----------------PKLVYLYLNN-TELTEL-D---VSHNTKLKSLSCVNAH-IQD 353 (457)
T ss_dssp -------CCCTTC-----------------TTCCEEECTT-CCCSCC-C---CTTCTTCSEEECCSSC-CCB
T ss_pred -------echhhc-----------------ccCCEEECCC-Cccccc-c---cccCCcCcEEECCCCC-CCC
Confidence 655544 5677788877 467765 3 4678888888887743 443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.6e-23 Score=225.64 Aligned_cols=300 Identities=17% Similarity=0.139 Sum_probs=220.6
Q ss_pred CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l 176 (606)
..++.+++++|.+..+|... .+++|++|++++|.+..++...|..+++|++|++++|.++.+| ..++++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 78899999999999999865 7899999999999999888777899999999999999999955 46799999999999
Q ss_pred eCCCCCC-Cc-ccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371 177 DYCRLKD-IA-IVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW 253 (606)
Q Consensus 177 ~~~~~~~-~~-~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 253 (606)
++|.++. |+ .++++++|++|++++|.++.+|+ .++.+++|++|++++|... .++ ++.+++|++|++++|.+..
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEEECCSSCCSE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhhhcccCcccc
Confidence 9999998 54 46999999999999999997755 6899999999999997654 444 6789999999999987643
Q ss_pred ccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371 254 EKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI 333 (606)
Q Consensus 254 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 333 (606)
+....+|+.|++++|.+..++.... ++|+.|++++|.+.+
T Consensus 207 -------------l~~~~~L~~L~ls~n~l~~~~~~~~--------------------------~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 207 -------------LAIPIAVEELDASHNSINVVRGPVN--------------------------VELTILKLQHNNLTD- 246 (597)
T ss_dssp -------------EECCTTCSEEECCSSCCCEEECSCC--------------------------SCCCEEECCSSCCCC-
T ss_pred -------------ccCCchhheeeccCCcccccccccC--------------------------CCCCEEECCCCCCCC-
Confidence 4455689999999998876554321 345555555554432
Q ss_pred cccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhh
Q 007371 334 LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKC 413 (606)
Q Consensus 334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~ 413 (606)
+.++. .+++|+.|++++|......|..+. .+++|++|++++|. +..+.. ....+|+|+.
T Consensus 247 ---~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~----- 305 (597)
T 3oja_B 247 ---TAWLL-NYPGLVEVDLSYNELEKIMYHPFV---KMQRLERLYISNNR-LVALNL--------YGQPIPTLKV----- 305 (597)
T ss_dssp ---CGGGG-GCTTCSEEECCSSCCCEEESGGGT---TCSSCCEEECTTSC-CCEEEC--------SSSCCTTCCE-----
T ss_pred ---Chhhc-cCCCCCEEECCCCccCCCCHHHhc---CccCCCEEECCCCC-CCCCCc--------ccccCCCCcE-----
Confidence 12222 236677777776655554455454 67777777777764 333311 0234566666
Q ss_pred hhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCC
Q 007371 414 YEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCD 486 (606)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 486 (606)
|++.++. +..++. .+..+++|+.|++++| .+..+ + +..+++|++|++++++
T Consensus 306 ------------L~Ls~N~-l~~i~~----~~~~l~~L~~L~L~~N-~l~~~-~---~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 306 ------------LDLSHNH-LLHVER----NQPQFDRLENLYLDHN-SIVTL-K---LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ------------EECCSSC-CCCCGG----GHHHHTTCSEEECCSS-CCCCC-C---CCTTCCCSEEECCSSC
T ss_pred ------------EECCCCC-CCccCc----ccccCCCCCEEECCCC-CCCCc-C---hhhcCCCCEEEeeCCC
Confidence 7777653 333432 2356777888888774 46665 3 3466788888887765
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=2.2e-22 Score=201.18 Aligned_cols=221 Identities=21% Similarity=0.275 Sum_probs=156.0
Q ss_pred CCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCC
Q 007371 145 TEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSN 223 (606)
Q Consensus 145 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 223 (606)
..++++|++++|.++.+|..++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 466777777777777777777777777777777777666 6667777777777777777777777777777777777777
Q ss_pred CcccccccHHHhhC---------CCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccc-c
Q 007371 224 CWLLEVIAPNVISK---------LSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVS-V 293 (606)
Q Consensus 224 ~~~~~~~p~~~i~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~ 293 (606)
|+..+.+|.. ++. +++|++|++++|.+...+ ..++++++|++|++++|.+..+|..+.. +
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---------~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~ 229 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLP---------ASIANLQNLKSLKIRNSPLSALGPAIHHLP 229 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCCCC---------GGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCcch---------HhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence 6666666655 433 777777777777665332 4567777777777777777666665543 6
Q ss_pred CCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCC
Q 007371 294 ELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPR 373 (606)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~ 373 (606)
+|+.|++. ++......+..+..+++|+.|++++|...+.++. ++. .+++|+.|++++|...+.+|..+. .+++
T Consensus 230 ~L~~L~Ls-~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~--~~~-~l~~L~~L~L~~n~~~~~iP~~l~---~L~~ 302 (328)
T 4fcg_A 230 KLEELDLR-GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL--DIH-RLTQLEKLDLRGCVNLSRLPSLIA---QLPA 302 (328)
T ss_dssp TCCEEECT-TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT--TGG-GCTTCCEEECTTCTTCCCCCGGGG---GSCT
T ss_pred CCCEEECc-CCcchhhhHHHhcCCCCCCEEECCCCCchhhcch--hhh-cCCCCCEEeCCCCCchhhccHHHh---hccC
Confidence 67777663 3233444556678888899999999887666543 343 358899999999999999998877 8888
Q ss_pred CcEEEeecC
Q 007371 374 LKHLHVKSC 382 (606)
Q Consensus 374 L~~L~l~~c 382 (606)
|+.+.+...
T Consensus 303 L~~l~l~~~ 311 (328)
T 4fcg_A 303 NCIILVPPH 311 (328)
T ss_dssp TCEEECCGG
T ss_pred ceEEeCCHH
Confidence 888888653
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.4e-21 Score=196.13 Aligned_cols=241 Identities=16% Similarity=0.169 Sum_probs=175.7
Q ss_pred cccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeee
Q 007371 122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILIL 198 (606)
Q Consensus 122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l 198 (606)
.+++.++++++....+|..+ .+++++|++++|.++.++. .++++++|++|++++|.++. |..++++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36788888888888888754 4688999999999888655 78899999999999998887 678889999999999
Q ss_pred cCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEE
Q 007371 199 ARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEI 278 (606)
Q Consensus 199 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 278 (606)
++|.++.+|..+. ++|++|++++|... .++...++++++|++|++++|.+..... ....++.+++|++|++
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI------ENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGB------CTTGGGGCTTCCEEEC
T ss_pred CCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCc------ChhhccCCCCcCEEEC
Confidence 9999988887765 78999999987644 5555548899999999999987753211 1266788899999999
Q ss_pred eeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCc
Q 007371 279 EVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGV 358 (606)
Q Consensus 279 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 358 (606)
++|.+..+|..+. ++|+.|++. ++......+..+..+++|+.|++++|.+.+... ..+. .+++|++|++++|. +
T Consensus 179 ~~n~l~~l~~~~~-~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~-~l~~L~~L~L~~N~-l 252 (330)
T 1xku_A 179 ADTNITTIPQGLP-PSLTELHLD-GNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLA-NTPHLRELHLNNNK-L 252 (330)
T ss_dssp CSSCCCSCCSSCC-TTCSEEECT-TSCCCEECTGGGTTCTTCCEEECCSSCCCEECT--TTGG-GSTTCCEEECCSSC-C
T ss_pred CCCccccCCcccc-ccCCEEECC-CCcCCccCHHHhcCCCCCCEEECCCCcCceeCh--hhcc-CCCCCCEEECCCCc-C
Confidence 9998888877654 677777773 222333334556677777888887776543221 1222 24677777777763 3
Q ss_pred ccccccccCCCCCCCCcEEEeecCC
Q 007371 359 QSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 359 ~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
..+|..+. .+++|++|++++|+
T Consensus 253 ~~lp~~l~---~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 253 VKVPGGLA---DHKYIQVVYLHNNN 274 (330)
T ss_dssp SSCCTTTT---TCSSCCEEECCSSC
T ss_pred ccCChhhc---cCCCcCEEECCCCc
Confidence 45665554 67777777777764
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=4e-22 Score=200.16 Aligned_cols=240 Identities=16% Similarity=0.180 Sum_probs=167.3
Q ss_pred cccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeee
Q 007371 122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILIL 198 (606)
Q Consensus 122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l 198 (606)
.+++.++++++....+|..+ .++|++|++++|.+..+ |..++++++|++|++++|.++. |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 36888888888888888765 46889999999988885 4578899999999999998887 578889999999999
Q ss_pred cCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEE
Q 007371 199 ARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEI 278 (606)
Q Consensus 199 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 278 (606)
++|.++.+|..+. ++|++|++++|.. ..+|...++.+++|++|++++|.+..... ....++.+ +|++|++
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGF------EPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGS------CTTSSCSC-CCSCCBC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCC------CcccccCC-ccCEEEC
Confidence 9998888887766 7899999998764 45555548889999999999887753110 11455666 8889999
Q ss_pred eeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCc
Q 007371 279 EVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGV 358 (606)
Q Consensus 279 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 358 (606)
++|.+..+|..+. ++|+.|++. ++......+..+..+++|+.|++++|.+.+..+ .++. .+++|+.|++++|. +
T Consensus 180 ~~n~l~~l~~~~~-~~L~~L~l~-~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~-~l~~L~~L~L~~N~-l 253 (332)
T 2ft3_A 180 SEAKLTGIPKDLP-ETLNELHLD-HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN--GSLS-FLPTLRELHLDNNK-L 253 (332)
T ss_dssp CSSBCSSCCSSSC-SSCSCCBCC-SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT--TGGG-GCTTCCEEECCSSC-C
T ss_pred cCCCCCccCcccc-CCCCEEECC-CCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh--hHhh-CCCCCCEEECCCCc-C
Confidence 9888888776543 567766663 222222233445666667777777665533211 1122 23666666666653 3
Q ss_pred ccccccccCCCCCCCCcEEEeecCC
Q 007371 359 QSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 359 ~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
+.+|..+. .+++|++|++++++
T Consensus 254 ~~lp~~l~---~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 254 SRVPAGLP---DLKLLQVVYLHTNN 275 (332)
T ss_dssp CBCCTTGG---GCTTCCEEECCSSC
T ss_pred eecChhhh---cCccCCEEECCCCC
Confidence 35555444 56666666666653
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.2e-22 Score=201.69 Aligned_cols=245 Identities=15% Similarity=0.149 Sum_probs=183.0
Q ss_pred CCCeEEEecCCCCc---ccCCcc-cccccceeeccc-ccc-cccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCc
Q 007371 100 KDPIAISLTYGGIQ---VLPERL-QCPCLELLHTEG-DGS-MQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQ 172 (606)
Q Consensus 100 ~~l~~L~l~~~~~~---~l~~~~-~l~~L~~L~~~~-~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~ 172 (606)
.++++|++++|.+. .+|..+ .+++|++|++++ +.. +.+|..+ .++++|++|++++|.++. +|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46889999999885 577666 888999999873 544 4666664 789999999999998884 888889999999
Q ss_pred EEEeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCC-CCCEEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371 173 TLCLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLT-RLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248 (606)
Q Consensus 173 ~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~ 248 (606)
+|++++|.+.. |..+.++++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. ++.++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 99999998875 778888999999999999888 7888888888 8999999988877778877 78887 99999998
Q ss_pred CCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCc
Q 007371 249 SFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGL 328 (606)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 328 (606)
|.+....+ ..++.+++|+.|++++|.+...+.. +..+++|+.|++++|
T Consensus 207 N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 207 NMLEGDAS--------VLFGSDKNTQKIHLAKNSLAFDLGK------------------------VGLSKNLNGLDLRNN 254 (313)
T ss_dssp SEEEECCG--------GGCCTTSCCSEEECCSSEECCBGGG------------------------CCCCTTCCEEECCSS
T ss_pred CcccCcCC--------HHHhcCCCCCEEECCCCceeeecCc------------------------ccccCCCCEEECcCC
Confidence 88766554 6778888999999988876533222 234456666666666
Q ss_pred ccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCce
Q 007371 329 EKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEIL 386 (606)
Q Consensus 329 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~ 386 (606)
.+.+.+ |.++.. +++|+.|++++|.....+|.. +.+++|+.|++.+++.+.
T Consensus 255 ~l~~~~--p~~l~~-l~~L~~L~Ls~N~l~~~ip~~----~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 255 RIYGTL--PQGLTQ-LKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCEECC--CGGGGG-CTTCCEEECCSSEEEEECCCS----TTGGGSCGGGTCSSSEEE
T ss_pred cccCcC--ChHHhc-CcCCCEEECcCCcccccCCCC----ccccccChHHhcCCCCcc
Confidence 654333 223332 367777777776655556552 367777777777776443
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.5e-21 Score=194.98 Aligned_cols=218 Identities=22% Similarity=0.291 Sum_probs=175.5
Q ss_pred cCCCeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371 99 RKDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD 177 (606)
Q Consensus 99 ~~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 177 (606)
...++.|++++|.+..+|... .+++|++|++++|.+..+|..+ .++++|++|++++|.++.+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 378999999999999999877 8999999999999988888775 88999999999999999999999999999999999
Q ss_pred CCCCCC--CcccCC---------CCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEc
Q 007371 178 YCRLKD--IAIVGQ---------LKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM 246 (606)
Q Consensus 178 ~~~~~~--~~~i~~---------l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l 246 (606)
+|.+.+ |..++. +++|++|++++|.++.+|..++++++|++|++++|... .+|.. ++.+++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEEEC
Confidence 987555 665554 99999999999999999999999999999999997754 57776 899999999999
Q ss_pred cCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCC-CCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEe
Q 007371 247 GNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADA-EILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMML 325 (606)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L 325 (606)
++|.+....+ ..++.+++|++|++++|.. ..+|.. +..+++|+.|++
T Consensus 237 s~n~~~~~~p--------~~~~~l~~L~~L~L~~n~~~~~~p~~------------------------~~~l~~L~~L~L 284 (328)
T 4fcg_A 237 RGCTALRNYP--------PIFGGRAPLKRLILKDCSNLLTLPLD------------------------IHRLTQLEKLDL 284 (328)
T ss_dssp TTCTTCCBCC--------CCTTCCCCCCEEECTTCTTCCBCCTT------------------------GGGCTTCCEEEC
T ss_pred cCCcchhhhH--------HHhcCCCCCCEEECCCCCchhhcchh------------------------hhcCCCCCEEeC
Confidence 9988776655 6788899999999998765 445544 345556666666
Q ss_pred cCcccccccccchhHHHhhccccceeccc
Q 007371 326 KGLEKVSILQENDGTKMLLQRTEGLWLET 354 (606)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 354 (606)
++|...+.++ .++.. +++|+.+.+..
T Consensus 285 ~~n~~~~~iP--~~l~~-L~~L~~l~l~~ 310 (328)
T 4fcg_A 285 RGCVNLSRLP--SLIAQ-LPANCIILVPP 310 (328)
T ss_dssp TTCTTCCCCC--GGGGG-SCTTCEEECCG
T ss_pred CCCCchhhcc--HHHhh-ccCceEEeCCH
Confidence 6666555443 23332 35555555543
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1e-21 Score=195.14 Aligned_cols=248 Identities=15% Similarity=0.092 Sum_probs=183.0
Q ss_pred cccceeeccccccc---ccchhHhcCCCCCcEEEeeC-CcCcc-CCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCC
Q 007371 122 PCLELLHTEGDGSM---QVSDHFFKGTEGLKVLNFTR-IHFSS-LPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLE 194 (606)
Q Consensus 122 ~~L~~L~~~~~~~~---~~~~~~~~~l~~L~~L~l~~-~~l~~-lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~ 194 (606)
.+++.|+++++.+. .+|..+ .++++|++|++++ |.+.. +|..++++++|++|++++|.+++ |..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46788887777765 466554 7788888888884 77764 78788888888888888888774 67788888888
Q ss_pred EeeecCCcCC-cccccccCCCCCCEEecCCCcccccccHHHhhCCC-CCCEEEccCCCCCCccccCCCccchHhhccCCC
Q 007371 195 ILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLS-QLEELYMGNSFSGWEKVEGGSNASLVELERLTK 272 (606)
Q Consensus 195 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 272 (606)
+|++++|.++ .+|..++.+++|++|++++|...+.+|.. ++.++ +|++|++++|.+....+ ..++.++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~--------~~~~~l~- 198 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP--------PTFANLN- 198 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC--------GGGGGCC-
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC--------hHHhCCc-
Confidence 8888888777 67778888888888888887776677777 77777 88888888887765444 5666666
Q ss_pred CCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceec
Q 007371 273 LATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWL 352 (606)
Q Consensus 273 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l 352 (606)
|++|++++|.+...+ +..+..+++|+.|++++|.+.+..+. + ..+++|++|++
T Consensus 199 L~~L~Ls~N~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~l~~~~~~---~-~~l~~L~~L~L 251 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDA-----------------------SVLFGSDKNTQKIHLAKNSLAFDLGK---V-GLSKNLNGLDL 251 (313)
T ss_dssp CSEEECCSSEEEECC-----------------------GGGCCTTSCCSEEECCSSEECCBGGG---C-CCCTTCCEEEC
T ss_pred ccEEECcCCcccCcC-----------------------CHHHhcCCCCCEEECCCCceeeecCc---c-cccCCCCEEEC
Confidence 888888777654222 23356778888999999877544332 2 23589999999
Q ss_pred ccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccc
Q 007371 353 ETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFP 432 (606)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~ 432 (606)
++|.....+|..+. .+++|++|++++|+--..+ |. ...+++|+. |.+.+.+
T Consensus 252 s~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~i--------p~-~~~l~~L~~-----------------l~l~~N~ 302 (313)
T 1ogq_A 252 RNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEI--------PQ-GGNLQRFDV-----------------SAYANNK 302 (313)
T ss_dssp CSSCCEECCCGGGG---GCTTCCEEECCSSEEEEEC--------CC-STTGGGSCG-----------------GGTCSSS
T ss_pred cCCcccCcCChHHh---cCcCCCEEECcCCcccccC--------CC-CccccccCh-----------------HHhcCCC
Confidence 99988778888777 8999999999999633232 11 245667777 8888877
Q ss_pred cccc
Q 007371 433 RLKE 436 (606)
Q Consensus 433 ~l~~ 436 (606)
.+..
T Consensus 303 ~lc~ 306 (313)
T 1ogq_A 303 CLCG 306 (313)
T ss_dssp EEES
T ss_pred CccC
Confidence 5554
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=196.55 Aligned_cols=269 Identities=17% Similarity=0.140 Sum_probs=205.0
Q ss_pred CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCC
Q 007371 102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~ 180 (606)
....+.+++.+..+|.... ++|++|+++++.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 33 ~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3457888888888887542 4899999999988888886678899999999999998884 5678899999999999999
Q ss_pred CCC-Cc-ccCCCCCCCEeeecCCcCCcccc--cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371 181 LKD-IA-IVGQLKKLEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV 256 (606)
Q Consensus 181 ~~~-~~-~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 256 (606)
++. +. .++++++|++|++++|.++.+|. .+.++++|++|++++|...+.++...++++++|++|++++|.+....+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 888 54 48889999999999999988887 688899999999998865666655448889999999999988776654
Q ss_pred cCCCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEEeCCCCCCC--CCCcccCCCCCcEEEecCccccc
Q 007371 257 EGGSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIRIGDESEDE--FDPLLVKSEAPRLMMLKGLEKVS 332 (606)
Q Consensus 257 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~L~~~~~~~ 332 (606)
..++.+++|++|++++|.+..+|..+. .++|+.|++......... ..........++.+++.++.+.+
T Consensus 192 --------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 192 --------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp --------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred --------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 678888999999999998887776553 388999998544332211 11123346678888998876644
Q ss_pred cc--ccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 333 IL--QENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 333 ~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
.- ..|.++. .+++|+.|++++|.. +.+|..+ ++.+++|++|++++|+
T Consensus 264 ~~l~~l~~~l~-~l~~L~~L~Ls~N~l-~~i~~~~--~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 264 ESLFQVMKLLN-QISGLLELEFSRNQL-KSVPDGI--FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHH-TCTTCCEEECCSSCC-CCCCTTT--TTTCTTCCEEECCSSC
T ss_pred cchhhhHHHHh-cccCCCEEECCCCCC-CccCHHH--HhcCCCCCEEEeeCCC
Confidence 21 1233333 358999999999854 4677653 2489999999999997
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=5.9e-21 Score=191.60 Aligned_cols=263 Identities=15% Similarity=0.143 Sum_probs=192.8
Q ss_pred CCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCC
Q 007371 101 DPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 101 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~ 179 (606)
.++.++++++.+..+|... .+++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4678888888888887655 36888899888888888766678899999999999988884 778888999999999998
Q ss_pred CCCC-CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccc--cccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 180 RLKD-IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLE--VIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~--~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
.+.. |..+. .+|++|++++|.++.+|.. +.++++|++|++++|.... ..+.. ++.+ +|++|++++|.+...+
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSBCSSCC
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcCCCCCccC
Confidence 8887 55554 7899999999988887764 7888999999998876532 33443 6666 8889999888877654
Q ss_pred ccCCCccchHhhccCCCCCEEEEeeCCCCCCCc-ccc-ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371 256 VEGGSNASLVELERLTKLATLEIEVADAEILPP-NFV-SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI 333 (606)
Q Consensus 256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 333 (606)
. .+. ++|++|++++|.+..++. .+. .++|+.|++.. +......+..+..+++|+.|++++|.+. .
T Consensus 189 ~---------~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 189 K---------DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp S---------SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred c---------ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 3 122 578888888888877663 333 37888888843 3333333446788899999999998775 3
Q ss_pred cccchhHHHhhccccceecccccCcccccccccC---CCCCCCCcEEEeecCCC
Q 007371 334 LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD---GEGFPRLKHLHVKSCSE 384 (606)
Q Consensus 334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~l~~L~~L~l~~c~~ 384 (606)
.|.++.. +++|+.|++++|.....-+..+.+ ...+++|+.|++.+++.
T Consensus 256 --lp~~l~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 256 --VPAGLPD-LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp --CCTTGGG-CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred --cChhhhc-CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 3444443 589999999987544332233321 11267899999999873
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.6e-22 Score=220.05 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=54.0
Q ss_pred cccCCccEEEeccCCC-cccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccc
Q 007371 446 SFFNNLFDLVVDDCTN-MSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLK 524 (606)
Q Consensus 446 ~~l~~L~~L~i~~C~~-L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 524 (606)
..+++|++|++++|.+ +.+.........+++|++|++++|. +.+... +.....+++|++|+|++|+ ++
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~---------~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL---------MEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH---------HHHHTCCTTCCEEEEESCC-CB
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH---------HHHHhcCcccCeeeccCCC-Cc
Confidence 3467788888877654 4443333344557778888887765 332111 1112356788888888886 44
Q ss_pred cccccccccccCCCcceEeeccCC
Q 007371 525 RFCNFTRNIIELPKLRYLTIENCP 548 (606)
Q Consensus 525 ~l~~~~~~~~~~~~L~~L~i~~Cp 548 (606)
.... +.....+++|+.|++++|+
T Consensus 502 ~~~~-~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 502 ERAI-AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHH-HHHHHHCSSCCEEEEESCB
T ss_pred HHHH-HHHHHhcCccCeeECcCCc
Confidence 3211 1134457888888888886
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=5e-23 Score=223.95 Aligned_cols=353 Identities=16% Similarity=0.080 Sum_probs=198.9
Q ss_pred cCCCCCcEEEeeCCcCcc-CCccccC-C-CCCcEEEeeCCC-CCC---CcccCCCCCCCEeeecCCcCCc-----ccccc
Q 007371 143 KGTEGLKVLNFTRIHFSS-LPSSLGC-L-INLQTLCLDYCR-LKD---IAIVGQLKKLEILILARSTIKQ-----LPLEI 210 (606)
Q Consensus 143 ~~l~~L~~L~l~~~~l~~-lp~~~~~-l-~~L~~L~l~~~~-~~~---~~~i~~l~~L~~L~l~~~~l~~-----lp~~i 210 (606)
..+++|++|+++++.++. .+..+.. + .+|++|++++|. +.. +....++++|++|++++|.+.. ++...
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 467777777777776654 3334444 2 337777777765 222 1333466777777777775542 33334
Q ss_pred cCCCCCCEEecCCCccc----ccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC--
Q 007371 211 GQLTRLQLLDLSNCWLL----EVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE-- 284 (606)
Q Consensus 211 ~~L~~L~~L~l~~~~~~----~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-- 284 (606)
..+++|++|++++|... ..++.. +.++++|++|++++|.+...+ ..++.+++|++|++..+...
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~l~---------~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETI-ARNCRSLVSVKVGDFEILELV---------GFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHH-HHHCTTCCEEECSSCBGGGGH---------HHHHHCTTCCEEEECBCCCCTT
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHH-HhhCCCCcEEeccCccHHHHH---------HHHhhhhHHHhhcccccccccc
Confidence 56677777777776543 223332 566777777777776554432 56677777777777643221
Q ss_pred --CCCcccc-ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371 285 --ILPPNFV-SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV 361 (606)
Q Consensus 285 --~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 361 (606)
..+..+. .++|+.+.+.. .....++..+..+++|+.|++++|.+.. .... .+...+++|+.|++.++.....+
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~--~~~~~l~~~~~~~~~L~~L~Ls~~~l~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~l 334 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSY--MGPNEMPILFPFAAQIRKLDLLYALLET-EDHC-TLIQKCPNLEVLETRNVIGDRGL 334 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETT--CCTTTGGGGGGGGGGCCEEEETTCCCCH-HHHH-HHHTTCTTCCEEEEEGGGHHHHH
T ss_pred hHHHHHHhhccccccccCccc--cchhHHHHHHhhcCCCcEEecCCCcCCH-HHHH-HHHHhCcCCCEEeccCccCHHHH
Confidence 1112221 26777776622 2333445556677788888888866321 1111 12234578888888744333333
Q ss_pred cccccCCCCCCCCcEEEeec----------CCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccc
Q 007371 362 VHELDDGEGFPRLKHLHVKS----------CSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHF 431 (606)
Q Consensus 362 ~~~l~~~~~l~~L~~L~l~~----------c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~ 431 (606)
+.... .+++|++|++++ |..++.... ..+...+++|+. |.+ .|
T Consensus 335 ~~~~~---~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~------~~l~~~~~~L~~-----------------L~l-~~ 387 (592)
T 3ogk_B 335 EVLAQ---YCKQLKRLRIERGADEQGMEDEEGLVSQRGL------IALAQGCQELEY-----------------MAV-YV 387 (592)
T ss_dssp HHHHH---HCTTCCEEEEECCCCSSTTSSTTCCCCHHHH------HHHHHHCTTCSE-----------------EEE-EE
T ss_pred HHHHH---hCCCCCEEEeecCccccccccccCccCHHHH------HHHHhhCccCeE-----------------EEe-ec
Confidence 33223 677888888884 655543100 000233566666 877 44
Q ss_pred ccccccccCCCCCcc-ccCCccEEEec---cCCCcccccc----hhHHhhcCCCcEEEEecCCC-cceeecccccccccc
Q 007371 432 PRLKEIWHGQALPVS-FFNNLFDLVVD---DCTNMSSAIP----ANLLRCLNNLVYLEVRNCDS-LEEVLHLEELINADK 502 (606)
Q Consensus 432 ~~l~~~~~~~~~~~~-~l~~L~~L~i~---~C~~L~~l~~----~~~~~~l~~L~~L~i~~c~~-l~~l~~~~~~~~~~~ 502 (606)
.++...... .++ .+++|+.|++. .|+.+++.+. ...+.++++|++|++++|.. +......
T Consensus 388 ~~l~~~~~~---~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~-------- 456 (592)
T 3ogk_B 388 SDITNESLE---SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS-------- 456 (592)
T ss_dssp SCCCHHHHH---HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH--------
T ss_pred CCccHHHHH---HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH--------
Confidence 544432111 112 36788888887 3667776421 12356788888888887764 2221110
Q ss_pred CCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCc
Q 007371 503 EHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDME 551 (606)
Q Consensus 503 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~ 551 (606)
.....+++|++|++.+|. ++.... +.....+++|++|++++|+ +.
T Consensus 457 -~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 457 -YIGQYSPNVRWMLLGYVG-ESDEGL-MEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp -HHHHSCTTCCEEEECSCC-SSHHHH-HHHHTCCTTCCEEEEESCC-CB
T ss_pred -HHHHhCccceEeeccCCC-CCHHHH-HHHHhcCcccCeeeccCCC-Cc
Confidence 011247888888888774 443211 1134557888888888887 53
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2.3e-20 Score=187.20 Aligned_cols=264 Identities=14% Similarity=0.150 Sum_probs=193.2
Q ss_pred CCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCC
Q 007371 101 DPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 101 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~ 179 (606)
.++.++++++.+..+|... .+++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 4678888888887777644 26788888888888888876678899999999999988884 778888999999999998
Q ss_pred CCCC-CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccc--cccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 180 RLKD-IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLE--VIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
.++. |..+. ++|++|++++|.++.++. .+.++++|++|++++|.... ..+.. ++++++|++|++++|.+...+
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSCC
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccccCC
Confidence 8877 55544 789999999988887765 47888999999998876532 34444 788899999999888877654
Q ss_pred ccCCCccchHhhccCCCCCEEEEeeCCCCCCC-ccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371 256 VEGGSNASLVELERLTKLATLEIEVADAEILP-PNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI 333 (606)
Q Consensus 256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 333 (606)
. .+ .++|++|++++|.+..++ ..+.. ++|+.|++..+ ......+..+..+++|+.|++++|.+.
T Consensus 188 ~---------~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-- 253 (330)
T 1xku_A 188 Q---------GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV-- 253 (330)
T ss_dssp S---------SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS--
T ss_pred c---------cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc--
Confidence 3 12 268889999888887664 33433 78888888433 233333346788899999999998775
Q ss_pred cccchhHHHhhccccceecccccCcccccccccC---CCCCCCCcEEEeecCCC
Q 007371 334 LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD---GEGFPRLKHLHVKSCSE 384 (606)
Q Consensus 334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~l~~L~~L~l~~c~~ 384 (606)
..|.++.. +++|++|++++|.....-+..+.+ ....++|+.|++.+++.
T Consensus 254 -~lp~~l~~-l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 254 -KVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp -SCCTTTTT-CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred -cCChhhcc-CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 23444433 488999999987644332232321 12357899999999873
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=8.8e-21 Score=185.99 Aligned_cols=264 Identities=18% Similarity=0.185 Sum_probs=180.7
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCC-
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCR- 180 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~- 180 (606)
+.++.+++.+..+|... .+++++|+++++.+..++...|..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 56777777777777543 45788888888888888776678888888888888888774 6778888888888888886
Q ss_pred CCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371 181 LKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE 257 (606)
Q Consensus 181 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 257 (606)
+.. +..+..+++|++|++++|.++.+ |..+.++++|++|++++|... .++...++.+++|++|++++|.+...+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 170 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPE- 170 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECT-
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCH-
Confidence 666 56788888888888888888766 456778888888888886544 4444447788888888888887765553
Q ss_pred CCCccchHhhccCCCCCEEEEeeCCCCCC-Cccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccc
Q 007371 258 GGSNASLVELERLTKLATLEIEVADAEIL-PPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQ 335 (606)
Q Consensus 258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 335 (606)
..+..+++|++|++++|.+..+ |..+.. ++|+.|++... ......+..+..+++|+.|++++|.+.....
T Consensus 171 -------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 171 -------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred -------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 4577788888888888887655 444433 77787777332 2222222346778888999999988766544
Q ss_pred cchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecC
Q 007371 336 ENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSC 382 (606)
Q Consensus 336 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c 382 (606)
.. ++. ..++.+....+...-..|..+. ...+..++..++.+|
T Consensus 243 ~~-~~~---~~l~~~~~~~~~~~c~~p~~l~-g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 243 AR-PLW---AWLQKFRGSSSEVPCSLPQRLA-GRDLKRLAANDLQGC 284 (285)
T ss_dssp GH-HHH---HHHHHCCSEECCCBEEESGGGT-TCBGGGSCGGGSCCC
T ss_pred cH-HHH---HHHHhcccccCccccCCchHhC-CcChhhcCHHHhccC
Confidence 33 222 2344444444443334555443 233455555555555
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=5.8e-21 Score=189.39 Aligned_cols=241 Identities=20% Similarity=0.136 Sum_probs=169.7
Q ss_pred EEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC---CccccCCCCCcEEEeeCCC
Q 007371 104 AISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL---PSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 104 ~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~ 180 (606)
.++.+++.+..+|.... +++++|+++++.+..+|..+|.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 56667777777776442 5788888888887778877777888888888888877653 5666677888888888887
Q ss_pred CCC-CcccCCCCCCCEeeecCCcCCcccc--cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC-ccc
Q 007371 181 LKD-IAIVGQLKKLEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW-EKV 256 (606)
Q Consensus 181 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~-~~~ 256 (606)
+.. +..+..+++|++|++++|.++.++. .+..+++|++|++++|...+..+.. ++.+++|++|++++|.+.. ..+
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEEC
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccch
Confidence 777 6667778888888888887776654 6777888888888887655555544 7778888888888876654 222
Q ss_pred cCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccccc
Q 007371 257 EGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQE 336 (606)
Q Consensus 257 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 336 (606)
..++.+++|++|++++|.+..++. ..+..+++|+.|++++|.+.+....
T Consensus 169 --------~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 169 --------DIFTELRNLTFLDLSQCQLEQLSP-----------------------TAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp --------SCCTTCTTCCEEECTTSCCCEECT-----------------------TTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred --------hHHhhCcCCCEEECCCCCcCCcCH-----------------------HHhcCCCCCCEEECCCCccCccChh
Confidence 456777788888888777654422 2235566777777777766432221
Q ss_pred chhHHHhhccccceecccccCcccccccccCCCCCC-CCcEEEeecCC
Q 007371 337 NDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFP-RLKHLHVKSCS 383 (606)
Q Consensus 337 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~-~L~~L~l~~c~ 383 (606)
.+ ..+++|+.|++++|......+..+. .++ +|++|++++++
T Consensus 218 --~~-~~l~~L~~L~L~~N~l~~~~~~~~~---~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 218 --PY-KCLNSLQVLDYSLNHIMTSKKQELQ---HFPSSLAFLNLTQND 259 (306)
T ss_dssp --GG-TTCTTCCEEECTTSCCCBCSSSSCC---CCCTTCCEEECTTCC
T ss_pred --hc-cCcccCCEeECCCCCCcccCHHHHH---hhhccCCEEEccCCC
Confidence 12 2357889999988876666665554 664 89999999986
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=191.44 Aligned_cols=199 Identities=20% Similarity=0.208 Sum_probs=130.5
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEe
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEIL 196 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L 196 (606)
.|+.....+.+++....+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|.++. +..++++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4555555667777777777755 3578888888888877555 67788888888888887777 4567788888888
Q ss_pred eecCCcCCccccc-ccCCCCCCEEecCCCcccccccH-HHhhCCCCCCEEEccCCC-CCCccccCCCccchHhhccCCCC
Q 007371 197 ILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAP-NVISKLSQLEELYMGNSF-SGWEKVEGGSNASLVELERLTKL 273 (606)
Q Consensus 197 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l~~L 273 (606)
++++|.++.+|.. ++++++|++|++++|.. ..+|. ..++.+++|++|++++|. +....+ ..++.+++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------~~~~~l~~L 176 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQR--------KDFAGLTFL 176 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECT--------TTTTTCCEE
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCH--------HHccCCCCC
Confidence 8888888777765 67788888888887653 35554 336777788888877773 333332 456677777
Q ss_pred CEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecc
Q 007371 274 ATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLE 353 (606)
Q Consensus 274 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 353 (606)
++|++++|.+..++ +..+..+++|+.|++++|.+. . .+..+...+++|+.|+++
T Consensus 177 ~~L~l~~n~l~~~~-----------------------~~~l~~l~~L~~L~l~~n~l~-~--~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 177 EELEIDASDLQSYE-----------------------PKSLKSIQNVSHLILHMKQHI-L--LLEIFVDVTSSVECLELR 230 (353)
T ss_dssp EEEEEEETTCCEEC-----------------------TTTTTTCSEEEEEEEECSCST-T--HHHHHHHHTTTEEEEEEE
T ss_pred CEEECCCCCcCccC-----------------------HHHHhccccCCeecCCCCccc-c--chhhhhhhcccccEEECC
Confidence 77777777665331 122345556666666665541 1 122233334666666666
Q ss_pred ccc
Q 007371 354 TLE 356 (606)
Q Consensus 354 ~~~ 356 (606)
+|.
T Consensus 231 ~n~ 233 (353)
T 2z80_A 231 DTD 233 (353)
T ss_dssp SCB
T ss_pred CCc
Confidence 654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.5e-20 Score=183.72 Aligned_cols=254 Identities=15% Similarity=0.104 Sum_probs=199.8
Q ss_pred CCCeEEEecCCCCcccCCcc--cccccceeeccccccccc---chhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEE
Q 007371 100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQV---SDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTL 174 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 174 (606)
+.+++|++++|.+..++... .+++|++|++++|.+..+ +..+ ..+++|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 56899999999999888753 899999999999987655 4444 67999999999999999999999999999999
Q ss_pred EeeCCCCCC-C--cccCCCCCCCEeeecCCcCCc-ccccccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCC
Q 007371 175 CLDYCRLKD-I--AIVGQLKKLEILILARSTIKQ-LPLEIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNS 249 (606)
Q Consensus 175 ~l~~~~~~~-~--~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~ 249 (606)
++++|.+.. + ..+..+++|++|++++|.+.. .|..+..+++|++|++++|...+ .+|.. ++.+++|++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCEEECCCC
Confidence 999999877 3 579999999999999998884 45668899999999999987665 45655 899999999999999
Q ss_pred CCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccc-c-ccCCcEEEEEeCCCCCCCCCCcccCC-CCCcEEEec
Q 007371 250 FSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNF-V-SVELQRYRIRIGDESEDEFDPLLVKS-EAPRLMMLK 326 (606)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~-~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~L~ 326 (606)
.+....+ ..++.+++|++|++++|.+..++... . .++|+.|++. ++......+..+..+ ++|+.|+++
T Consensus 186 ~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 186 QLEQLSP--------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS-LNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCCEECT--------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT-TSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CcCCcCH--------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC-CCCCcccCHHHHHhhhccCCEEEcc
Confidence 8877654 67889999999999999998877643 2 3899999984 344444455566776 489999999
Q ss_pred CcccccccccchhHHHhhccccceecccccCcccccccc
Q 007371 327 GLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHEL 365 (606)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 365 (606)
+|.+.+..... ++..++...+.+.+..+...-..|..+
T Consensus 257 ~N~~~~~c~~~-~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 257 QNDFACTCEHQ-SFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp TCCEECSGGGH-HHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred CCCeecccChH-HHHHHHHhhhhhhccccccccCCchhh
Confidence 99886654432 334444556655554433333334433
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=4.7e-20 Score=193.22 Aligned_cols=242 Identities=20% Similarity=0.168 Sum_probs=180.6
Q ss_pred CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCC
Q 007371 102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~ 180 (606)
...++.++..+..+|.... +++++|++++|.+..++...|.++++|++|++++|.++. .|..+.++++|++|++++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4567777777777776442 578888888888888876667888889999999888888 44678888889999998888
Q ss_pred CCC-C-cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371 181 LKD-I-AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE 257 (606)
Q Consensus 181 ~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 257 (606)
++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+..+.++...+..+++|++|++++|.+...+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--
Confidence 877 3 558888889999998888887765 57788888999888887788887766888888888888888776543
Q ss_pred CCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccc
Q 007371 258 GGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEN 337 (606)
Q Consensus 258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 337 (606)
.+..+++|++|++++|.+..++.. .+..+++|+.|++++|.+....+
T Consensus 213 --------~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~-- 259 (452)
T 3zyi_A 213 --------NLTPLVGLEELEMSGNHFPEIRPG-----------------------SFHGLSSLKKLWVMNSQVSLIER-- 259 (452)
T ss_dssp --------CCTTCTTCCEEECTTSCCSEECGG-----------------------GGTTCTTCCEEECTTSCCCEECT--
T ss_pred --------cccccccccEEECcCCcCcccCcc-----------------------cccCccCCCEEEeCCCcCceECH--
Confidence 367788888888888877655332 24556677777777766643221
Q ss_pred hhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 338 DGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 338 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
..+. .+++|+.|++++|.. +.++... +..+++|++|++++++
T Consensus 260 ~~~~-~l~~L~~L~L~~N~l-~~~~~~~--~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 260 NAFD-GLASLVELNLAHNNL-SSLPHDL--FTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTT-TCTTCCEEECCSSCC-SCCCTTS--STTCTTCCEEECCSSC
T ss_pred HHhc-CCCCCCEEECCCCcC-CccChHH--hccccCCCEEEccCCC
Confidence 1222 247888888888744 4444322 3378999999999886
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=5e-20 Score=192.32 Aligned_cols=242 Identities=20% Similarity=0.201 Sum_probs=179.3
Q ss_pred CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCC
Q 007371 102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~ 180 (606)
.+.++..+..+..+|.... ++++.|++++|.+..++...|.++++|++|++++|.+..++ ..|.++++|++|++++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4567777777777776543 57888888888888887766788888888888888888744 678888888888888888
Q ss_pred CCC-C-cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371 181 LKD-I-AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE 257 (606)
Q Consensus 181 ~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 257 (606)
++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+..+.++...+.++++|++|++++|.+...+
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence 887 3 568888888888888888887765 57788888888888877777777766788888888888888776543
Q ss_pred CCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccc
Q 007371 258 GGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEN 337 (606)
Q Consensus 258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 337 (606)
.+..+++|++|++++|.+..++.. .+..+++|+.|++++|.+....+
T Consensus 202 --------~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~-- 248 (440)
T 3zyj_A 202 --------NLTPLIKLDELDLSGNHLSAIRPG-----------------------SFQGLMHLQKLWMIQSQIQVIER-- 248 (440)
T ss_dssp --------CCTTCSSCCEEECTTSCCCEECTT-----------------------TTTTCTTCCEEECTTCCCCEECT--
T ss_pred --------ccCCCcccCEEECCCCccCccChh-----------------------hhccCccCCEEECCCCceeEECh--
Confidence 367788888888888877654322 23556667777777766533221
Q ss_pred hhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 338 DGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 338 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
..+. .+++|+.|+|++|... .++... +..+++|+.|++++++
T Consensus 249 ~~~~-~l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 249 NAFD-NLQSLVEINLAHNNLT-LLPHDL--FTPLHHLERIHLHHNP 290 (440)
T ss_dssp TSST-TCTTCCEEECTTSCCC-CCCTTT--TSSCTTCCEEECCSSC
T ss_pred hhhc-CCCCCCEEECCCCCCC-ccChhH--hccccCCCEEEcCCCC
Confidence 1122 2478888888887544 444322 3378999999999887
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.7e-22 Score=219.81 Aligned_cols=404 Identities=16% Similarity=0.100 Sum_probs=229.4
Q ss_pred CCCeEEEecCCCC-ccc---CC------------cc-cccccceeecccccccccc-hhHhcCCCCCcEEEeeCC-cCcc
Q 007371 100 KDPIAISLTYGGI-QVL---PE------------RL-QCPCLELLHTEGDGSMQVS-DHFFKGTEGLKVLNFTRI-HFSS 160 (606)
Q Consensus 100 ~~l~~L~l~~~~~-~~l---~~------------~~-~l~~L~~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~l~~ 160 (606)
+.++.|+++++.. ..+ |. .. .+++|++|+++++.+.... ..+...+++|++|++++| .+..
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 6688888888653 211 11 11 4677888887777654332 233235788888888887 5544
Q ss_pred --CCccccCCCCCcEEEeeCCCCCC--Cc----ccCCCCCCCEeeecCCc--CC--cccccccCCCCCCEEecCCCcccc
Q 007371 161 --LPSSLGCLINLQTLCLDYCRLKD--IA----IVGQLKKLEILILARST--IK--QLPLEIGQLTRLQLLDLSNCWLLE 228 (606)
Q Consensus 161 --lp~~~~~l~~L~~L~l~~~~~~~--~~----~i~~l~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~~~ 228 (606)
++..+.++++|++|++++|.+++ +. ....+++|++|++++|. +. .++..+.++++|++|++++|....
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 55555678888888888887654 22 22366788888888875 22 233334557888888888875555
Q ss_pred cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEE-EEeeCCCCCCCcccc-ccCCcEEEEEeCCCC
Q 007371 229 VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATL-EIEVADAEILPPNFV-SVELQRYRIRIGDES 306 (606)
Q Consensus 229 ~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 306 (606)
.++.. +.++++|++|++..+....... ........++++++|+.| .+.......++.... .++|+.|++..+...
T Consensus 226 ~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 226 KLATL-LQRAPQLEELGTGGYTAEVRPD--VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHHHH-HHHCTTCSEEECSBCCCCCCHH--HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHHHH-HhcCCcceEcccccccCccchh--hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 56555 7788888888876553211000 011123466777788877 333332233443332 267777777433311
Q ss_pred CCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceeccc--------ccCccccc-ccccCCCCCCCCcEE
Q 007371 307 EDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLET--------LEGVQSVV-HELDDGEGFPRLKHL 377 (606)
Q Consensus 307 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~--------~~~~~~~~-~~l~~~~~l~~L~~L 377 (606)
...+...+..+++|+.|++.+| . +... ...+...+++|++|++.+ +..++... ..+ ..++++|++|
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~-~~~~-l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l--~~~~~~L~~L 377 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-I-EDAG-LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESV 377 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-G-HHHH-HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH--HHHCTTCCEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-c-CHHH-HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH--HHhchhHHHH
Confidence 1112222456777777777775 1 1111 112333457777777743 22222211 111 1136777777
Q ss_pred EeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecc-----ccccccccccC--CCCCccccCC
Q 007371 378 HVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLS-----HFPRLKEIWHG--QALPVSFFNN 450 (606)
Q Consensus 378 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~-----~~~~l~~~~~~--~~~~~~~l~~ 450 (606)
.+ +|..++.... ..+...+|+|+. |++. +|..+...+.. .......+++
T Consensus 378 ~~-~~~~l~~~~~------~~l~~~~~~L~~-----------------L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 378 LY-FCRQMTNAAL------ITIARNRPNMTR-----------------FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp EE-EESCCCHHHH------HHHHHHCTTCCE-----------------EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred HH-hcCCcCHHHH------HHHHhhCCCcce-----------------eEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 44 3333332100 000123455555 8888 56666643211 0011356789
Q ss_pred ccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccc
Q 007371 451 LFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFT 530 (606)
Q Consensus 451 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 530 (606)
|+.|++++ .+++.........+++|++|++++|. +.+..... ....+++|++|++++|+. ..... .
T Consensus 434 L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~---------l~~~~~~L~~L~L~~n~~-~~~~~-~ 499 (594)
T 2p1m_B 434 LRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHH---------VLSGCDSLRKLEIRDCPF-GDKAL-L 499 (594)
T ss_dssp CCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHH---------HHHHCTTCCEEEEESCSC-CHHHH-H
T ss_pred ccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHH---------HHhcCCCcCEEECcCCCC-cHHHH-H
Confidence 99999966 66665344444568999999999887 43221110 113589999999999975 33222 1
Q ss_pred cccccCCCcceEeeccCCC
Q 007371 531 RNIIELPKLRYLTIENCPD 549 (606)
Q Consensus 531 ~~~~~~~~L~~L~i~~Cp~ 549 (606)
.....+++|++|++++|+.
T Consensus 500 ~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 500 ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HTGGGGGGSSEEEEESSCC
T ss_pred HHHHhCCCCCEEeeeCCCC
Confidence 2344578999999999975
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=2.8e-22 Score=211.08 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=82.3
Q ss_pred ccceeecccccccccc-hhHhcCCCCCcEEEeeCCcCc-----cCCccccCCCCCcEEEeeCCCCCC--CcccC-CCC--
Q 007371 123 CLELLHTEGDGSMQVS-DHFFKGTEGLKVLNFTRIHFS-----SLPSSLGCLINLQTLCLDYCRLKD--IAIVG-QLK-- 191 (606)
Q Consensus 123 ~L~~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~-~l~-- 191 (606)
++++|+++++.+...+ ..++..+++|++|++++|.++ .++..+..+++|++|++++|.+.+ +..+. .+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4555555555443332 222455666666666666655 244555566666666666666544 22221 233
Q ss_pred --CCCEeeecCCcCC-----cccccccCCCCCCEEecCCCcccccccHH----HhhCCCCCCEEEccCCCCCCccccCCC
Q 007371 192 --KLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLEVIAPN----VISKLSQLEELYMGNSFSGWEKVEGGS 260 (606)
Q Consensus 192 --~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~----~i~~l~~L~~L~l~~~~~~~~~~~~~~ 260 (606)
+|++|++++|.++ .+|..+..+++|++|++++|......+.. .....++|++|++++|.+.....
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~---- 159 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC---- 159 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH----
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH----
Confidence 4666666666655 34556666666666666665533222221 11124456666666665543221
Q ss_pred ccchHhhccCCCCCEEEEeeCCCC
Q 007371 261 NASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 261 ~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
......++.+++|++|++++|.+.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHHhhCCCCCEEECcCCCcc
Confidence 112244555666666666666553
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=7.9e-22 Score=214.61 Aligned_cols=375 Identities=14% Similarity=0.083 Sum_probs=232.7
Q ss_pred cccccceeecccccc-ccc---c-----------hhHhcCCCCCcEEEeeCCcCcc-CCcccc-CCCCCcEEEeeCCC-C
Q 007371 120 QCPCLELLHTEGDGS-MQV---S-----------DHFFKGTEGLKVLNFTRIHFSS-LPSSLG-CLINLQTLCLDYCR-L 181 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~-~~~---~-----------~~~~~~l~~L~~L~l~~~~l~~-lp~~~~-~l~~L~~L~l~~~~-~ 181 (606)
.+++|++|.+.++.. .++ | ..++..+++|++|+++++.++. .+..+. .+++|++|++++|. +
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 667899999777542 111 1 2334578999999999998876 444554 68999999999994 5
Q ss_pred CC--C-cccCCCCCCCEeeecCCcCCc-----ccccccCCCCCCEEecCCCccccccc----HHHhhCCCCCCEEEccCC
Q 007371 182 KD--I-AIVGQLKKLEILILARSTIKQ-----LPLEIGQLTRLQLLDLSNCWLLEVIA----PNVISKLSQLEELYMGNS 249 (606)
Q Consensus 182 ~~--~-~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~~p----~~~i~~l~~L~~L~l~~~ 249 (606)
+. + ..+.++++|++|++++|.++. ++.....+++|++|++++|. ..+. ...+.++++|++|++++|
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 54 3 444589999999999997653 34444578899999999875 2222 222456799999999988
Q ss_pred CCCCccccCCCccchHhhccCCCCCEEEEeeCCC-------CCCCcccc-ccCCcEEEEEeCCCCCCCCCCcccCCCCCc
Q 007371 250 FSGWEKVEGGSNASLVELERLTKLATLEIEVADA-------EILPPNFV-SVELQRYRIRIGDESEDEFDPLLVKSEAPR 321 (606)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 321 (606)
..... ....+..+++|++|++..+.. ..++..+. .++|+.+.- ........++.....+++|+
T Consensus 222 ~~~~~--------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~-~~~~~~~~l~~~~~~~~~L~ 292 (594)
T 2p1m_B 222 VPLEK--------LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSRLT 292 (594)
T ss_dssp SCHHH--------HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEEC-CBTCCGGGGGGGHHHHTTCC
T ss_pred CcHHH--------HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccC-CcccchhhHHHHHHhhCCCC
Confidence 32221 236778899999999765532 12222222 267777631 11122222333344678999
Q ss_pred EEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC--------CceEeccccc
Q 007371 322 LMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS--------EILHIVGSVR 393 (606)
Q Consensus 322 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~--------~l~~~~~~~~ 393 (606)
.|++++|.+. ... ...+...+++|++|++.+|.....++... ..+++|++|++.+|. .+....
T Consensus 293 ~L~L~~~~l~-~~~-l~~~~~~~~~L~~L~l~~~~~~~~l~~l~---~~~~~L~~L~L~~~~~~g~~~~~~l~~~~---- 363 (594)
T 2p1m_B 293 TLNLSYATVQ-SYD-LVKLLCQCPKLQRLWVLDYIEDAGLEVLA---STCKDLRELRVFPSEPFVMEPNVALTEQG---- 363 (594)
T ss_dssp EEECTTCCCC-HHH-HHHHHTTCTTCCEEEEEGGGHHHHHHHHH---HHCTTCCEEEEECSCTTCSSCSSCCCHHH----
T ss_pred EEEccCCCCC-HHH-HHHHHhcCCCcCEEeCcCccCHHHHHHHH---HhCCCCCEEEEecCcccccccCCCCCHHH----
Confidence 9999997742 211 11223346889999999873322233222 257899999996642 222100
Q ss_pred cccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEec-----cCCCcccccch
Q 007371 394 REEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVD-----DCTNMSSAIPA 468 (606)
Q Consensus 394 ~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~-----~C~~L~~l~~~ 468 (606)
...+...+++|+. |. .+|.++....... -...+++|+.|++. +|+.+++.+..
T Consensus 364 --l~~l~~~~~~L~~-----------------L~-~~~~~l~~~~~~~--l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 364 --LVSVSMGCPKLES-----------------VL-YFCRQMTNAALIT--IARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp --HHHHHHHCTTCCE-----------------EE-EEESCCCHHHHHH--HHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred --HHHHHHhchhHHH-----------------HH-HhcCCcCHHHHHH--HHhhCCCcceeEeecccCCCcccccCCchh
Confidence 0000122445555 84 4555554322111 01247899999999 78888855221
Q ss_pred ----hHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEee
Q 007371 469 ----NLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTI 544 (606)
Q Consensus 469 ----~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i 544 (606)
..+.++++|++|++++ .+.+...... ...+++|+.|++.+|. ++.... ......+++|++|++
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l---------~~~~~~L~~L~L~~~~-i~~~~~-~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI---------GTYAKKMEMLSVAFAG-DSDLGM-HHVLSGCDSLRKLEI 488 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS--SCCHHHHHHH---------HHHCTTCCEEEEESCC-SSHHHH-HHHHHHCTTCCEEEE
T ss_pred hHHHHHHhhCCCccEEeecC--cccHHHHHHH---------HHhchhccEeeccCCC-CcHHHH-HHHHhcCCCcCEEEC
Confidence 2367889999999966 4443221110 1148899999999985 433221 011245899999999
Q ss_pred ccCCC
Q 007371 545 ENCPD 549 (606)
Q Consensus 545 ~~Cp~ 549 (606)
++|+-
T Consensus 489 ~~n~~ 493 (594)
T 2p1m_B 489 RDCPF 493 (594)
T ss_dssp ESCSC
T ss_pred cCCCC
Confidence 99984
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.5e-18 Score=186.60 Aligned_cols=158 Identities=20% Similarity=0.175 Sum_probs=121.8
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
..++.|++++|.+..+|.... ++|++|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 568899999999988887655 788889988888888776 47888999999988888876 6788888888888
Q ss_pred CCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371 180 RLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG 258 (606)
Q Consensus 180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 258 (606)
.++. |. .+.+|++|++++|+++.+|.. +++|++|++++|.. ..+|. .+++|+.|++++|.+...+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~N~l~~l~--- 177 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQLTSLP--- 177 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSCCC---
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-CCcCC----ccCCCCEEECCCCCCCCCc---
Confidence 8887 44 567888888888888888864 47888888888753 44553 3467888888888766543
Q ss_pred CCccchHhhccCCCCCEEEEeeCCCCCCCc
Q 007371 259 GSNASLVELERLTKLATLEIEVADAEILPP 288 (606)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 288 (606)
..+++|+.|++++|.+..+|.
T Consensus 178 ---------~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 178 ---------MLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp ---------CCCTTCCEEECCSSCCSCCCC
T ss_pred ---------ccCCCCcEEECCCCCCCCCCC
Confidence 235678888888877766554
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=1.4e-20 Score=187.43 Aligned_cols=218 Identities=14% Similarity=0.044 Sum_probs=141.8
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA 199 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~ 199 (606)
.+++|++|++++|.+..++...|..+++|++|++++|.++..+. +..+++|++|++++|.++.. ...++|++|+++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEECC
Confidence 44567777777777666665556777777777777777766443 67777777777777766551 123677777777
Q ss_pred CCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhh-ccCCCCCEEEE
Q 007371 200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVEL-ERLTKLATLEI 278 (606)
Q Consensus 200 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l 278 (606)
+|.++.++.. .+++|++|++++|...+..+.. ++.+++|++|++++|.+....+ ..+ +.+++|++|++
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNF--------AELAASSDTLEHLNL 176 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEEG--------GGGGGGTTTCCEEEC
T ss_pred CCccCCcCcc--ccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCcccH--------HHHhhccCcCCEEEC
Confidence 7777766543 3567777777776544333323 6667777777777776655443 333 35677777777
Q ss_pred eeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCc
Q 007371 279 EVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGV 358 (606)
Q Consensus 279 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 358 (606)
++|.+..++.. ..+++|+.|++++|.+.+ + +..+. .+++|+.|++++|. +
T Consensus 177 ~~N~l~~~~~~-------------------------~~l~~L~~L~Ls~N~l~~-l--~~~~~-~l~~L~~L~L~~N~-l 226 (317)
T 3o53_A 177 QYNFIYDVKGQ-------------------------VVFAKLKTLDLSSNKLAF-M--GPEFQ-SAAGVTWISLRNNK-L 226 (317)
T ss_dssp TTSCCCEEECC-------------------------CCCTTCCEEECCSSCCCE-E--CGGGG-GGTTCSEEECTTSC-C
T ss_pred CCCcCcccccc-------------------------cccccCCEEECCCCcCCc-c--hhhhc-ccCcccEEECcCCc-c
Confidence 77766544322 235677777777776643 2 22233 35889999999874 4
Q ss_pred ccccccccCCCCCCCCcEEEeecCCCc
Q 007371 359 QSVVHELDDGEGFPRLKHLHVKSCSEI 385 (606)
Q Consensus 359 ~~~~~~l~~~~~l~~L~~L~l~~c~~l 385 (606)
+.+|..+. .+++|++|++++++-.
T Consensus 227 ~~l~~~~~---~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 227 VLIEKALR---FSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEECTTCC---CCTTCCEEECTTCCCB
T ss_pred cchhhHhh---cCCCCCEEEccCCCcc
Confidence 46776665 8899999999998743
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=181.82 Aligned_cols=222 Identities=16% Similarity=0.185 Sum_probs=181.4
Q ss_pred CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 176 (606)
..++.|++++|.+..++.. . .+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 6689999999999777643 3 89999999999999999988888999999999999999999765 6899999999999
Q ss_pred eCCCCCC--CcccCCCCCCCEeeecCC-cCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCC
Q 007371 177 DYCRLKD--IAIVGQLKKLEILILARS-TIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG 252 (606)
Q Consensus 177 ~~~~~~~--~~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 252 (606)
++|.+.. +..+.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|. +..+++|++|++++|.+.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEECCCCccC
Confidence 9999988 468999999999999995 6777765 58899999999999975 457775 899999999999999988
Q ss_pred CccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccc
Q 007371 253 WEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEK 330 (606)
Q Consensus 253 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 330 (606)
...+ ..+..+++|++|++.+|.+..++.... .++|+.|++. ++......+..+..+++|+.|+|++|.+
T Consensus 221 ~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 221 AIRP--------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA-HNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECT--------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT-TSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccCh--------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC-CCCCCccChhHhccccCCCEEEcCCCCc
Confidence 7765 778999999999999999887655432 2777777773 2333333334456677777777777766
Q ss_pred ccc
Q 007371 331 VSI 333 (606)
Q Consensus 331 ~~~ 333 (606)
...
T Consensus 292 ~Cd 294 (440)
T 3zyj_A 292 NCN 294 (440)
T ss_dssp ECS
T ss_pred cCC
Confidence 443
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=1.8e-18 Score=168.69 Aligned_cols=223 Identities=16% Similarity=0.196 Sum_probs=159.2
Q ss_pred EEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC
Q 007371 105 ISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD 183 (606)
Q Consensus 105 L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~ 183 (606)
++.....+..+|.... +++++|+++++.+..++...|.++++|++|++++|.++.++ ..+.++++|++|++++|.++.
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3444455566665432 46888888888888887766788888899999888888854 467888889999998888877
Q ss_pred --CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 184 --IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 184 --~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
+..+.++++|++|++++|.+..++. .++++++|++|++++|.... .+|.. ++.+++|++|++++|.+...++
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~--- 166 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC--- 166 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG---
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCH---
Confidence 4678888889999998888887765 67888889999888876544 35666 8888889999988888766543
Q ss_pred CccchHhhccCCCCC-EEEEeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccc
Q 007371 260 SNASLVELERLTKLA-TLEIEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQ 335 (606)
Q Consensus 260 ~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 335 (606)
..+..+..++.|. +|++++|.+..++..... .+|+.|++..+ ......+..+..+++|+.|++++|.+.+..+
T Consensus 167 --~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 167 --TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp --GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred --HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccccCC
Confidence 1223344444444 788888888777655433 57777777332 2332223345677888888888887765544
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=5.6e-20 Score=182.55 Aligned_cols=243 Identities=15% Similarity=0.096 Sum_probs=169.1
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeeccccccc--ccchhHh------cCCCCCcEEEeeCCcCcc-CCccc--cCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSM--QVSDHFF------KGTEGLKVLNFTRIHFSS-LPSSL--GCL 168 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~--~~~~~~~------~~l~~L~~L~l~~~~l~~-lp~~~--~~l 168 (606)
..++.+++++|.+ .+|.... ..++.|+++++.+. .++..+. .++++|++|++++|.++. +|..+ +.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 4466667777777 6665431 12777787777653 3454431 268889999999998885 77766 888
Q ss_pred CCCcEEEeeCCCCCC-CcccCCC-----CCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCccccc--ccHHHh--hC
Q 007371 169 INLQTLCLDYCRLKD-IAIVGQL-----KKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEV--IAPNVI--SK 237 (606)
Q Consensus 169 ~~L~~L~l~~~~~~~-~~~i~~l-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~--~p~~~i--~~ 237 (606)
++|++|++++|.+++ |..++.+ ++|++|++++|++..+| ..++++++|++|++++|...+. ++.. + +.
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTTS
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhcc
Confidence 899999999988887 6666666 88999999999888776 6788889999999988776554 2333 4 78
Q ss_pred CCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCC
Q 007371 238 LSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKS 317 (606)
Q Consensus 238 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 317 (606)
+++|++|++++|.+..... .....+..+++|++|++++|.+...+.. ..+..+
T Consensus 200 l~~L~~L~L~~N~l~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------~~~~~l 252 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSG-----VCSALAAARVQLQGLDLSHNSLRDAAGA----------------------PSCDWP 252 (312)
T ss_dssp CTTCCEEECTTSCCCCHHH-----HHHHHHHTTCCCSEEECTTSCCCSSCCC----------------------SCCCCC
T ss_pred CCCCCEEECCCCcCcchHH-----HHHHHHhcCCCCCEEECCCCcCCcccch----------------------hhhhhc
Confidence 8899999998887763321 0013345778888998888887654311 112335
Q ss_pred CCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 318 EAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 318 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
++|+.|++++|.+. .+ |.++. ++|++|++++|.. +.+|. +. .+++|++|++++++
T Consensus 253 ~~L~~L~Ls~N~l~-~i--p~~~~---~~L~~L~Ls~N~l-~~~p~-~~---~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QV--PKGLP---AKLSVLDLSYNRL-DRNPS-PD---ELPQVGNLSLKGNP 307 (312)
T ss_dssp TTCCEEECTTSCCS-SC--CSSCC---SEEEEEECCSSCC-CSCCC-TT---TSCEEEEEECTTCT
T ss_pred CCCCEEECCCCccC-hh--hhhcc---CCceEEECCCCCC-CCChh-Hh---hCCCCCEEeccCCC
Confidence 67777777777764 33 32332 6888888888743 44455 44 88999999998875
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.6e-18 Score=181.50 Aligned_cols=222 Identities=18% Similarity=0.182 Sum_probs=179.7
Q ss_pred CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 176 (606)
..++.|++++|.+..++.. . .+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .+.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5789999999999777543 3 89999999999999998887778999999999999999999665 4889999999999
Q ss_pred eCCCCCC-C-cccCCCCCCCEeeecCC-cCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCC
Q 007371 177 DYCRLKD-I-AIVGQLKKLEILILARS-TIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG 252 (606)
Q Consensus 177 ~~~~~~~-~-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 252 (606)
++|.+.. + ..+.++++|++|++++| .+..+|. .+..+++|++|++++|.. ..+|. +..+++|++|++++|.+.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPN--LTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCC--CTTCTTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-ccccc--ccccccccEEECcCCcCc
Confidence 9999988 4 68899999999999995 6777765 588999999999999764 45665 899999999999999988
Q ss_pred CccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcc-cc-ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccc
Q 007371 253 WEKVEGGSNASLVELERLTKLATLEIEVADAEILPPN-FV-SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEK 330 (606)
Q Consensus 253 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 330 (606)
...+ ..+.++++|++|++++|.+..++.. +. .++|+.|++.. +......+..+..+++|+.|+|++|.+
T Consensus 232 ~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 232 EIRP--------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECG--------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ccCc--------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCCc
Confidence 7765 7889999999999999998766543 22 27777777733 233333334456677777777777766
Q ss_pred ccc
Q 007371 331 VSI 333 (606)
Q Consensus 331 ~~~ 333 (606)
...
T Consensus 303 ~Cd 305 (452)
T 3zyi_A 303 NCD 305 (452)
T ss_dssp ECS
T ss_pred CCC
Confidence 444
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=5.6e-18 Score=164.41 Aligned_cols=200 Identities=22% Similarity=0.288 Sum_probs=147.3
Q ss_pred CCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCcc-ccCCCCCcEEEeeCC
Q 007371 101 DPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSS-LGCLINLQTLCLDYC 179 (606)
Q Consensus 101 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 179 (606)
..+.++++++.+..+|.... +++++|+++++.+..++...|.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 45678888888877776443 5788888888888877776677888888888888888876654 477888888888888
Q ss_pred CCCC-C-cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371 180 RLKD-I-AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV 256 (606)
Q Consensus 180 ~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 256 (606)
.+.. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++|. +..+|...++.+++|++|++++|.+...++
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 8777 3 566788888888888888887664 35788888888888865 445555547788888888888887766654
Q ss_pred cCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371 257 EGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI 333 (606)
Q Consensus 257 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 333 (606)
..+..+++|++|++++|.+..+|.. .+..+++|+.|++++|.+...
T Consensus 175 --------~~~~~l~~L~~L~L~~N~l~~~~~~-----------------------~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 --------GAFDKLTELKTLKLDNNQLKRVPEG-----------------------AFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp --------TTTTTCTTCCEEECCSSCCSCCCTT-----------------------TTTTCTTCCEEECCSSCBCCS
T ss_pred --------hHhccCCCcCEEECCCCcCCcCCHH-----------------------HhccccCCCEEEecCCCeeCC
Confidence 4567778888888888777665543 234566777777887766444
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=7.9e-21 Score=199.94 Aligned_cols=384 Identities=18% Similarity=0.117 Sum_probs=185.2
Q ss_pred CeEEEecCCCCcccC--Ccc-cccccceeecccccccc-----cchhHhcCCCCCcEEEeeCCcCcc-CCccc-cCCC--
Q 007371 102 PIAISLTYGGIQVLP--ERL-QCPCLELLHTEGDGSMQ-----VSDHFFKGTEGLKVLNFTRIHFSS-LPSSL-GCLI-- 169 (606)
Q Consensus 102 l~~L~l~~~~~~~l~--~~~-~l~~L~~L~~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~-~~l~-- 169 (606)
+++|+++++.+...+ ... .+++|++|++++|.+.. ++. .+..+++|++|++++|.+.+ .+..+ ..+.
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 455666655553222 111 45556666655555442 222 23455666666666665543 11111 2233
Q ss_pred --CCcEEEeeCCCCCC------CcccCCCCCCCEeeecCCcCCcc-----ccc-ccCCCCCCEEecCCCccccc----cc
Q 007371 170 --NLQTLCLDYCRLKD------IAIVGQLKKLEILILARSTIKQL-----PLE-IGQLTRLQLLDLSNCWLLEV----IA 231 (606)
Q Consensus 170 --~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~l-----p~~-i~~L~~L~~L~l~~~~~~~~----~p 231 (606)
+|++|++++|.++. +..+.++++|++|++++|.+... ... ....++|++|++++|..... ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 46666666665552 34555566666666666655411 111 11244566666666543331 22
Q ss_pred HHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhc-cCCCCCEEEEeeCCCCC-----CCcccc-ccCCcEEEEEeCC
Q 007371 232 PNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELE-RLTKLATLEIEVADAEI-----LPPNFV-SVELQRYRIRIGD 304 (606)
Q Consensus 232 ~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~-----~~~~~~-~~~L~~L~l~~~~ 304 (606)
.. +..+++|++|++++|.+..... ......+. ..++|++|++++|.+.. ++..+. .++|+.|++..+.
T Consensus 164 ~~-l~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 164 SV-LRAKPDFKELTVSNNDINEAGV----RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HH-HHHCTTCCEEECCSSBCHHHHH----HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HH-HhhCCCCCEEECcCCCcchHHH----HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 22 4455666666666655432211 00001111 24456666666655543 222222 2556666553221
Q ss_pred CCCCC---C-CCcccCCCCCcEEEecCcccccccc--cchhHHHhhccccceecccccCcccccccccC--CCCCCCCcE
Q 007371 305 ESEDE---F-DPLLVKSEAPRLMMLKGLEKVSILQ--ENDGTKMLLQRTEGLWLETLEGVQSVVHELDD--GEGFPRLKH 376 (606)
Q Consensus 305 ~~~~~---~-~~~l~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~l~~L~~ 376 (606)
..... + ......+++|+.|++++|.+...-. .+..+. .+++|++|++++|......+..+.. ....++|++
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 10000 0 0112246788888888876533210 122222 2478888888887543322211110 123468999
Q ss_pred EEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCC-CCCc-cccCCccEE
Q 007371 377 LHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQ-ALPV-SFFNNLFDL 454 (606)
Q Consensus 377 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~-~~l~~L~~L 454 (606)
|++++|. ++.... ...+.....+++|+. |++.++. +....... .... ...++|++|
T Consensus 318 L~L~~n~-l~~~~~---~~l~~~l~~~~~L~~-----------------L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 318 LWVKSCS-FTAACC---SHFSSVLAQNRFLLE-----------------LQISNNR-LEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp EECTTSC-CBGGGH---HHHHHHHHHCSSCCE-----------------EECCSSB-CHHHHHHHHHHHHTSTTCCCCEE
T ss_pred eEcCCCC-CchHHH---HHHHHHHhhCCCccE-----------------EEccCCc-cccccHHHHHHHHcCCCCceEEE
Confidence 9999886 221100 000000223456666 8888773 43321100 0000 125799999
Q ss_pred EeccCCCccc----ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccc
Q 007371 455 VVDDCTNMSS----AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPK 522 (606)
Q Consensus 455 ~i~~C~~L~~----l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 522 (606)
++++| .+++ ..+ ..+..+++|++|++++|+ +.......-. ...-...++|+.|.+.++..
T Consensus 376 ~L~~n-~i~~~~~~~l~-~~l~~~~~L~~L~l~~N~-i~~~~~~~l~-----~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 376 WLADC-DVSDSSCSSLA-ATLLANHSLRELDLSNNC-LGDAGILQLV-----ESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp ECTTS-CCCHHHHHHHH-HHHHHCCCCCEEECCSSS-CCHHHHHHHH-----HHHTSTTCCCCEEECTTCCC
T ss_pred ECCCC-CCChhhHHHHH-HHHHhCCCccEEECCCCC-CCHHHHHHHH-----HHhccCCcchhheeeccccc
Confidence 99997 5664 213 335679999999999985 4432211100 00012345688888877643
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.8e-18 Score=168.12 Aligned_cols=218 Identities=19% Similarity=0.156 Sum_probs=165.7
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARS 201 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~ 201 (606)
++++.+++.+..+|..+ .++|++|++++|.++.+| ..+.++++|++|++++|.+.. +..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56778888888888754 678999999999999865 568999999999999999887 678999999999999999
Q ss_pred c-CCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371 202 T-IKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE 279 (606)
Q Consensus 202 ~-l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 279 (606)
. +..+ |..+..+++|++|++++|...+..|.. ++++++|++|++++|.+...++ ..++.+++|++|+++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPD--------DTFRDLGNLTHLFLH 161 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCCcccccCH--------hHhccCCCccEEECC
Confidence 6 8877 677899999999999998765544544 8899999999999998877664 568889999999999
Q ss_pred eCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcc
Q 007371 280 VADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQ 359 (606)
Q Consensus 280 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 359 (606)
+|.+..++... +..+++|+.|++++|.+.+.. +.++. .+++|+.|++++|....
T Consensus 162 ~n~l~~~~~~~-----------------------~~~l~~L~~L~l~~n~l~~~~--~~~~~-~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 162 GNRISSVPERA-----------------------FRGLHSLDRLLLHQNRVAHVH--PHAFR-DLGRLMTLYLFANNLSA 215 (285)
T ss_dssp SSCCCEECTTT-----------------------TTTCTTCCEEECCSSCCCEEC--TTTTT-TCTTCCEEECCSSCCSC
T ss_pred CCcccccCHHH-----------------------hcCccccCEEECCCCcccccC--HhHcc-CcccccEeeCCCCcCCc
Confidence 99887665531 244556666666666553322 12222 23677777777764443
Q ss_pred cccccccCCCCCCCCcEEEeecCC
Q 007371 360 SVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 360 ~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
..+..+. .+++|++|++++++
T Consensus 216 ~~~~~~~---~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 216 LPTEALA---PLRALQYLRLNDNP 236 (285)
T ss_dssp CCHHHHT---TCTTCCEEECCSSC
T ss_pred CCHHHcc---cCcccCEEeccCCC
Confidence 3223344 78888888888876
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2e-19 Score=179.02 Aligned_cols=239 Identities=18% Similarity=0.127 Sum_probs=189.3
Q ss_pred CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371 100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD 177 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 177 (606)
+++++|++++|.+..++. .. .+++|++|++++|.+..++. +..+++|++|++++|.++.+|. .++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEECC
Confidence 579999999999977764 33 89999999999998877766 6899999999999999987653 4899999999
Q ss_pred CCCCCC-CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 178 YCRLKD-IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 178 ~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
+|.++. +.. .+++|++|++++|.++.++. .++.+++|++|++++|...+..+....+.+++|++|++++|.+...+
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 999988 432 37889999999999997754 78889999999999987666556553358999999999999887653
Q ss_pred ccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371 256 VEGGSNASLVELERLTKLATLEIEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL 334 (606)
Q Consensus 256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 334 (606)
. ...+++|++|++++|.+..+|..+.. ++|+.|++..+. . ..++..+..+++|+.|++++|.+...
T Consensus 186 ~----------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l-~~l~~~~~~l~~L~~L~l~~N~~~~~- 252 (317)
T 3o53_A 186 G----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-L-VLIEKALRFSQNLEHFDLRGNGFHCG- 252 (317)
T ss_dssp C----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-C-CEECTTCCCCTTCCEEECTTCCCBHH-
T ss_pred c----------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-c-cchhhHhhcCCCCCEEEccCCCccCc-
Confidence 2 33588999999999999988877654 899999884332 2 24566678888999999999887532
Q ss_pred ccchhHHHhhccccceecccccCccc
Q 007371 335 QENDGTKMLLQRTEGLWLETLEGVQS 360 (606)
Q Consensus 335 ~~~~~~~~~l~~L~~L~l~~~~~~~~ 360 (606)
..+.++.. +++|+.|++.++..++.
T Consensus 253 ~~~~~~~~-~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 253 TLRDFFSK-NQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHHS
T ss_pred CHHHHHhc-cccceEEECCCchhccC
Confidence 23444443 47888888886665554
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=2.5e-18 Score=167.11 Aligned_cols=201 Identities=17% Similarity=0.179 Sum_probs=95.7
Q ss_pred ccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeee
Q 007371 121 CPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILIL 198 (606)
Q Consensus 121 l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l 198 (606)
+++|+.|.+.++.+..++. +..+++|++|++++|.+..++ .++++++|++|++++|.++. + ..++++++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3344444444444433332 244455555555555444432 34445555555555555444 2 23445555555555
Q ss_pred cCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEE
Q 007371 199 ARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE 277 (606)
Q Consensus 199 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 277 (606)
++|.++.+|.. ++.+++|++|++++|... .++...++.+++|++|++++|.+...++ ..++.+++|++|+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPE--------GVFDKLTQLKDLR 187 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCH--------HHhcCCccCCEEE
Confidence 55555544432 344555555555554322 3333324455555555555554443332 3344555555555
Q ss_pred EeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccC
Q 007371 278 IEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEG 357 (606)
Q Consensus 278 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 357 (606)
+++|.+..++.. .+..+++|+.|++++|.+.+. +++|+.|++..+..
T Consensus 188 L~~N~l~~~~~~-----------------------~~~~l~~L~~L~l~~N~~~~~----------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 188 LYQNQLKSVPDG-----------------------VFDRLTSLQYIWLHDNPWDCT----------CPGIRYLSEWINKH 234 (272)
T ss_dssp CCSSCCSCCCTT-----------------------TTTTCTTCCEEECCSSCBCCC----------TTTTHHHHHHHHHT
T ss_pred CCCCcCCccCHH-----------------------HHhCCcCCCEEEccCCCcccc----------CcHHHHHHHHHHhC
Confidence 555544433321 123344455555555444322 25667777777766
Q ss_pred ccccccccc
Q 007371 358 VQSVVHELD 366 (606)
Q Consensus 358 ~~~~~~~l~ 366 (606)
...+|.+++
T Consensus 235 ~g~ip~~~~ 243 (272)
T 3rfs_A 235 SGVVRNSAG 243 (272)
T ss_dssp GGGBBCTTS
T ss_pred CCcccCccc
Confidence 666766554
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=5.8e-18 Score=165.77 Aligned_cols=199 Identities=22% Similarity=0.227 Sum_probs=142.8
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
..++.++++++.+..+|.... ++++.|++++|.+..++...|..+++|++|++++|.++.++.. +.+++|++|++++|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN 87 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS
T ss_pred CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC
Confidence 456777888887777776543 5777888888777777666667788888888888887776554 67778888888888
Q ss_pred CCCC-CcccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371 180 RLKD-IAIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE 257 (606)
Q Consensus 180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 257 (606)
.+.. |..+..+++|++|++++|+++.+| ..+..+++|++|++++|.. ..+|...+..+++|++|++++|.+...+.
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~- 165 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPA- 165 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCSCCCT-
T ss_pred cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEECCCCcCCccCH-
Confidence 7777 667777888888888888877776 3577788888888887653 45555546777888888888887766554
Q ss_pred CCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371 258 GGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI 333 (606)
Q Consensus 258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 333 (606)
..+..+++|+.|++++|.+..+|..+ .....|+.+.+++|.....
T Consensus 166 -------~~~~~l~~L~~L~L~~N~l~~ip~~~------------------------~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 166 -------GLLNGLENLDTLLLQENSLYTIPKGF------------------------FGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCTTT------------------------TTTCCCSEEECCSCCBCCS
T ss_pred -------HHhcCcCCCCEEECCCCcCCccChhh------------------------cccccCCeEEeCCCCccCc
Confidence 45567778888888877777666553 3344667777777665443
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=2.1e-17 Score=177.72 Aligned_cols=235 Identities=16% Similarity=0.093 Sum_probs=193.7
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
++++.|++++|.+..+|. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|. .+.+|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 678999999999998888 67899999999999988886 68999999999999999887 6789999999999
Q ss_pred CCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371 180 RLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG 258 (606)
Q Consensus 180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 258 (606)
.++. |.. +++|++|++++|.++.+|.. +.+|+.|++++|. +..+| ..+++|+.|++++|.+...+.
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~l~~l~~-- 198 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLP----MLPSGLQELSVSDNQLASLPT-- 198 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSCCCC--
T ss_pred CCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCC-CCCCc----ccCCCCcEEECCCCCCCCCCC--
Confidence 9988 543 48999999999999998863 5789999999976 44566 457899999999998876542
Q ss_pred CCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccch
Q 007371 259 GSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEND 338 (606)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 338 (606)
.+++|+.|++.+|.+..+|.. .++|+.|++..+.. . .++ ..+++|+.|++++|.+. .++.
T Consensus 199 ----------~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L-~-~lp---~~l~~L~~L~Ls~N~L~-~lp~-- 258 (622)
T 3g06_A 199 ----------LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRL-T-SLP---VLPSELKELMVSGNRLT-SLPM-- 258 (622)
T ss_dssp ----------CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCC-S-CCC---CCCTTCCEEECCSSCCS-CCCC--
T ss_pred ----------ccchhhEEECcCCcccccCCC--CCCCCEEEccCCcc-C-cCC---CCCCcCcEEECCCCCCC-cCCc--
Confidence 247899999999999988864 37899999854322 2 233 56689999999999775 3332
Q ss_pred hHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCC
Q 007371 339 GTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSE 384 (606)
Q Consensus 339 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~ 384 (606)
.+++|+.|++++|. ++.+|..+. ++++|+.|++++|+-
T Consensus 259 ----~~~~L~~L~Ls~N~-L~~lp~~l~---~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 259 ----LPSGLLSLSVYRNQ-LTRLPESLI---HLSSETTVNLEGNPL 296 (622)
T ss_dssp ----CCTTCCEEECCSSC-CCSCCGGGG---GSCTTCEEECCSCCC
T ss_pred ----ccccCcEEeCCCCC-CCcCCHHHh---hccccCEEEecCCCC
Confidence 35899999999985 457887776 899999999999973
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=4.1e-19 Score=176.34 Aligned_cols=217 Identities=16% Similarity=0.145 Sum_probs=162.2
Q ss_pred CeEEEecCCCCcc--cCCcc--------cccccceeeccccccc-ccchhHh-cCCCCCcEEEeeCCcCccCCccccCC-
Q 007371 102 PIAISLTYGGIQV--LPERL--------QCPCLELLHTEGDGSM-QVSDHFF-KGTEGLKVLNFTRIHFSSLPSSLGCL- 168 (606)
Q Consensus 102 l~~L~l~~~~~~~--l~~~~--------~l~~L~~L~~~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~l~~lp~~~~~l- 168 (606)
++.|++++|.+.. ++... .+++|++|++++|.+. .+|..+| ..+++|++|++++|.++..|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 5566777776633 33322 4789999999999876 5676654 88999999999999999988888877
Q ss_pred ----CCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCc---ccccc--cCCCCCCEEecCCCcccc--cccHHHh
Q 007371 169 ----INLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQ---LPLEI--GQLTRLQLLDLSNCWLLE--VIAPNVI 235 (606)
Q Consensus 169 ----~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~~~--~~p~~~i 235 (606)
++|++|++++|.+.. +..++++++|++|++++|++.. +|..+ +.+++|++|++++|...+ .++...+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 899999999999988 4889999999999999998763 45555 899999999999987542 4455546
Q ss_pred hCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCccc
Q 007371 236 SKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLV 315 (606)
Q Consensus 236 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 315 (606)
..+++|++|++++|.+....+. ..+..+++|++|++++|.+..+|..+. ++|+.|++..... .. .+. +.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~-------~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l-~~-~p~-~~ 293 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGA-------PSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRL-DR-NPS-PD 293 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCC-------SCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCC-CS-CCC-TT
T ss_pred hcCCCCCEEECCCCcCCcccch-------hhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCC-CC-Chh-Hh
Confidence 7899999999999998775521 445668899999999999998887755 5666665532221 11 111 44
Q ss_pred CCCCCcEEEecCcc
Q 007371 316 KSEAPRLMMLKGLE 329 (606)
Q Consensus 316 ~~~~L~~L~L~~~~ 329 (606)
.+++|+.|++++|.
T Consensus 294 ~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 294 ELPQVGNLSLKGNP 307 (312)
T ss_dssp TSCEEEEEECTTCT
T ss_pred hCCCCCEEeccCCC
Confidence 44445555554443
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=3.2e-19 Score=187.96 Aligned_cols=124 Identities=17% Similarity=0.090 Sum_probs=53.8
Q ss_pred ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCc
Q 007371 123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARST 202 (606)
Q Consensus 123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~ 202 (606)
+|++|++++|.+..++...|..+++|++|++++|.++..+. ++.+++|++|++++|.++..+ ..++|++|++++|.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCCc
Confidence 44444444444444443333444444444444444444222 444444444444444443310 11444444444444
Q ss_pred CCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371 203 IKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW 253 (606)
Q Consensus 203 l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 253 (606)
++.+|.. .+++|++|++++|...+..|.. ++.+++|++|++++|.+..
T Consensus 111 l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 111 ISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCE
T ss_pred CCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCC
Confidence 4444321 2344444444444433332322 4444444444444444443
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=6.6e-18 Score=164.07 Aligned_cols=173 Identities=25% Similarity=0.261 Sum_probs=152.4
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDY 178 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~ 178 (606)
+.++.|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++|.++.+|. .++++++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 8899999999999988887799999999999999888763 6899999999999999999655 479999999999999
Q ss_pred CCCCC-C-cccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 179 CRLKD-I-AIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 179 ~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
|.++. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|... .++...++.+++|++|++++|.+...+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccC
Confidence 99988 4 5689999999999999999988765 589999999999998755 555554789999999999999988776
Q ss_pred ccCCCccchHhhccCCCCCEEEEeeCCC
Q 007371 256 VEGGSNASLVELERLTKLATLEIEVADA 283 (606)
Q Consensus 256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 283 (606)
+ ..++.+++|+.|++.+|.+
T Consensus 198 ~--------~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 198 D--------GVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp T--------TTTTTCTTCCEEECCSSCB
T ss_pred H--------HHHhCCcCCCEEEccCCCc
Confidence 5 5678999999999998865
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=2.3e-17 Score=160.12 Aligned_cols=176 Identities=26% Similarity=0.333 Sum_probs=154.6
Q ss_pred CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 176 (606)
..+++|++++|.+..++.. . .+++|++|++++|.+..++..+|.++++|++|++++|.++.+|. .+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 5689999999999888763 3 89999999999999999999988999999999999999999665 5689999999999
Q ss_pred eCCCCCC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371 177 DYCRLKD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW 253 (606)
Q Consensus 177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 253 (606)
++|.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..++...+.++++|++|++++|.+..
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCEEECCCCcCCc
Confidence 9999988 46789999999999999999988875 78999999999999764 45555548899999999999999887
Q ss_pred ccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 254 EKVEGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 254 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
.++ ..+..+++|+.|++.+|.+.
T Consensus 196 ~~~--------~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 196 VPE--------GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCT--------TTTTTCTTCCEEECCSSCBC
T ss_pred CCH--------HHhccccCCCEEEecCCCee
Confidence 664 56788999999999988753
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.2e-17 Score=163.60 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=126.6
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeee
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILIL 198 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l 198 (606)
.+++++++++.++.+..+|..+ .+++++|++++|.++. .|..+.++++|++|++++|.++..+..+.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 5678888888888888888765 4688899999998888 45678889999999999998888333478889999999
Q ss_pred cCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEE
Q 007371 199 ARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEI 278 (606)
Q Consensus 199 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 278 (606)
++|.++.+|..+..+++|++|++++|... .+|...++.+++|++|++++|.+...++ ..+..+++|+.|++
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEKLSL 155 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEEC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccCh--------hhcccccCCCEEEC
Confidence 99988888888888999999999887644 5554448888899999999888876654 55677888888888
Q ss_pred eeCCCCCCCcc
Q 007371 279 EVADAEILPPN 289 (606)
Q Consensus 279 ~~~~~~~~~~~ 289 (606)
++|.+..+|..
T Consensus 156 ~~N~l~~l~~~ 166 (290)
T 1p9a_G 156 ANNNLTELPAG 166 (290)
T ss_dssp TTSCCSCCCTT
T ss_pred CCCcCCccCHH
Confidence 88887766654
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.9e-17 Score=163.73 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=101.9
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
+.+++|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 5666666666666666544466666666666666666555 456666666666666666554 4566666666666666
Q ss_pred CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
.++..+.+..+++|++|++++|.++.+|. ++.+++|++|++++|.. ..++. +..+++|++|++++|.+...+
T Consensus 118 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~~---- 189 (308)
T 1h6u_A 118 QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV-SDLTP--LANLSKLTTLKADDNKISDIS---- 189 (308)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCCG----
T ss_pred CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC-CCChh--hcCCCCCCEEECCCCccCcCh----
Confidence 66653346666666666666666665554 55666666666666543 33433 566666666666666554432
Q ss_pred CccchHhhccCCCCCEEEEeeCCCCCC
Q 007371 260 SNASLVELERLTKLATLEIEVADAEIL 286 (606)
Q Consensus 260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~ 286 (606)
.+..+++|++|++++|.+..+
T Consensus 190 ------~l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 190 ------PLASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp ------GGGGCTTCCEEECTTSCCCBC
T ss_pred ------hhcCCCCCCEEEccCCccCcc
Confidence 155566666666666655443
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=4.2e-17 Score=161.27 Aligned_cols=202 Identities=19% Similarity=0.233 Sum_probs=167.3
Q ss_pred CCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCC
Q 007371 110 GGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQ 189 (606)
Q Consensus 110 ~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~ 189 (606)
+.+..+.....+++|++|++.++.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++.+..
T Consensus 29 ~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~ 105 (308)
T 1h6u_A 29 SNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAG 105 (308)
T ss_dssp SSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTT
T ss_pred CCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcC
Confidence 344443344478899999999999888874 5889999999999999999877 9999999999999999988778999
Q ss_pred CCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhcc
Q 007371 190 LKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELER 269 (606)
Q Consensus 190 l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 269 (606)
+++|++|++++|.++.+|. +..+++|++|++++|.. ..++. ++.+++|++|++++|.+.... .++.
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~~----------~l~~ 171 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP--LAGLTNLQYLSIGNAQVSDLT----------PLAN 171 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCG----------GGTT
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc--ccCCCCccEEEccCCcCCCCh----------hhcC
Confidence 9999999999999998875 89999999999999764 45554 789999999999999876543 3889
Q ss_pred CCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccc
Q 007371 270 LTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKV 331 (606)
Q Consensus 270 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 331 (606)
+++|++|++++|.+..++.....++|+.|++..+.... . ..+..+++|+.|++++|.+.
T Consensus 172 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~--~-~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD--V-SPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB--C-GGGTTCTTCCEEEEEEEEEE
T ss_pred CCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCc--c-ccccCCCCCCEEEccCCeee
Confidence 99999999999999888774455899999984433222 2 24788999999999998773
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=4.4e-18 Score=179.25 Aligned_cols=232 Identities=19% Similarity=0.136 Sum_probs=179.1
Q ss_pred CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371 100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD 177 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 177 (606)
++++.|++++|.+..++. .+ .+++|++|++++|.+...++ +..+++|++|++++|.++.+|. .++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 479999999999977764 33 89999999999998877666 6899999999999999988664 3899999999
Q ss_pred CCCCCC-CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 178 YCRLKD-IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 178 ~~~~~~-~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
+|.++. +. ..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|....+.+++|++|++++|.+...+
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 999998 43 2468999999999999976 5578999999999999998777777763348999999999999987664
Q ss_pred ccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371 256 VEGGSNASLVELERLTKLATLEIEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL 334 (606)
Q Consensus 256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 334 (606)
. ...+++|+.|++++|.+..+|..+.. ++|+.|++..+. . ..++..+..+++|+.|++++|.+.+.
T Consensus 186 ~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l-~~lp~~l~~l~~L~~L~l~~N~l~c~- 252 (487)
T 3oja_A 186 G----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-L-VLIEKALRFSQNLEHFDLRGNGFHCG- 252 (487)
T ss_dssp C----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-C-CEECTTCCCCTTCCEEECTTCCBCHH-
T ss_pred c----------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-C-cccchhhccCCCCCEEEcCCCCCcCc-
Confidence 2 34689999999999999888776543 778888773322 2 23555566777777777777766422
Q ss_pred ccchhHHHhhccccceecc
Q 007371 335 QENDGTKMLLQRTEGLWLE 353 (606)
Q Consensus 335 ~~~~~~~~~l~~L~~L~l~ 353 (606)
..+.++.. ++.|+.+.+.
T Consensus 253 ~~~~~~~~-l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSK-NQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTT-CHHHHHHHHH
T ss_pred chHHHHHh-CCCCcEEecc
Confidence 22223322 3555555554
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=2e-17 Score=161.17 Aligned_cols=192 Identities=21% Similarity=0.263 Sum_probs=161.7
Q ss_pred CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l 176 (606)
..+++|++++|.+..++. .. .+++|++|++++|.+..++...|..+++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 568999999999988775 33 8999999999999999888877899999999999999999854 67899999999999
Q ss_pred eCCCCCC--CcccCCCCCCCEeeecCCcCCc--ccccccCCCCCCEEecCCCcccccccHHHhhCCCCCC----EEEccC
Q 007371 177 DYCRLKD--IAIVGQLKKLEILILARSTIKQ--LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE----ELYMGN 248 (606)
Q Consensus 177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~----~L~l~~ 248 (606)
++|.+.. +..++++++|++|++++|.++. +|..++++++|++|++++|...+..+.. +..+++|+ +|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH-hhhhhhccccceeeecCC
Confidence 9999888 3579999999999999999986 7889999999999999998755443333 66666666 899999
Q ss_pred CCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEE
Q 007371 249 SFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIR 301 (606)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~ 301 (606)
|.+...++ ......+|++|++++|.+..+|.... .++|+.|++.
T Consensus 187 n~l~~~~~---------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 187 NPMNFIQP---------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp SCCCEECT---------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred CcccccCc---------cccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 98876653 23334489999999999998887653 3899999983
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.3e-17 Score=158.70 Aligned_cols=128 Identities=15% Similarity=0.135 Sum_probs=57.0
Q ss_pred ccceeecccccccccchhHhcCCCCCcEEEeeCCc-CccCCc-cccCCCCCcEEEeeC-CCCCC--CcccCCCCCCCEee
Q 007371 123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIH-FSSLPS-SLGCLINLQTLCLDY-CRLKD--IAIVGQLKKLEILI 197 (606)
Q Consensus 123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~-~~~~~--~~~i~~l~~L~~L~ 197 (606)
++++|+++++.+..++...|..+++|++|++++|. ++.++. .+.++++|++|++++ |.++. +..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444444434444445555555443 444332 344444455555544 44444 23344444444444
Q ss_pred ecCCcCCcccccccCCCCCC---EEecCCCcccccccHHHhhCCCCCC-EEEccCCCC
Q 007371 198 LARSTIKQLPLEIGQLTRLQ---LLDLSNCWLLEVIAPNVISKLSQLE-ELYMGNSFS 251 (606)
Q Consensus 198 l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~~~~~p~~~i~~l~~L~-~L~l~~~~~ 251 (606)
+++|.++.+|. ++.+++|+ +|++++|.....+|...+..+++|+ +|++++|.+
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 44444444443 44444444 4444443223333332244444444 444444433
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=5.8e-17 Score=155.41 Aligned_cols=174 Identities=24% Similarity=0.315 Sum_probs=138.3
Q ss_pred CCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCC
Q 007371 101 DPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 101 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~ 179 (606)
..++++++++.+..+|.... ++++.|+++++.+..++...|.++++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34678888888888887654 5788888888888888777678888999999999888884 445788888999999988
Q ss_pred CCCC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371 180 RLKD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV 256 (606)
Q Consensus 180 ~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 256 (606)
.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..+|...++.+++|++|++++|.+...++
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 8887 36678888899999998888888765 57888899999888754 45555447888889999988888876664
Q ss_pred cCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 257 EGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 257 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
..+..+++|+.|++++|.+.
T Consensus 173 --------~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 --------GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------TTTTTCTTCCEEECCSCCBC
T ss_pred --------HHHhCCCCCCEEEeeCCcee
Confidence 56778888888888888764
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3e-17 Score=156.19 Aligned_cols=190 Identities=14% Similarity=0.170 Sum_probs=160.1
Q ss_pred CCCeEEEecCCCCcccCCc-c-cccccceeeccccc-ccccchhHhcCCCCCcEEEeeC-CcCccCC-ccccCCCCCcEE
Q 007371 100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDG-SMQVSDHFFKGTEGLKVLNFTR-IHFSSLP-SSLGCLINLQTL 174 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~~~~l~~L~~L 174 (606)
..++.|++++|.+..++.. . .+++|++|++++|. +..++...|.++++|++|++++ |.++.+| ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5689999999999888873 3 89999999999996 8899987789999999999999 9999966 578999999999
Q ss_pred EeeCCCCCCCcccCCCCCCC---EeeecCC-cCCccccc-ccCCCCCC-EEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371 175 CLDYCRLKDIAIVGQLKKLE---ILILARS-TIKQLPLE-IGQLTRLQ-LLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248 (606)
Q Consensus 175 ~l~~~~~~~~~~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~ 248 (606)
++++|.++..+.+..+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|.. ..+|...+.. ++|++|++++
T Consensus 111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTT-CEEEEEECTT
T ss_pred eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCC-CCCCEEEcCC
Confidence 99999998833388888888 9999999 99988764 88999999 999999765 4777763444 8999999999
Q ss_pred CC-CCCccccCCCccchHhhccC-CCCCEEEEeeCCCCCCCccccccCCcEEEE
Q 007371 249 SF-SGWEKVEGGSNASLVELERL-TKLATLEIEVADAEILPPNFVSVELQRYRI 300 (606)
Q Consensus 249 ~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 300 (606)
|. +...++ ..++.+ ++|+.|++++|.+..+|.. ..++|+.|++
T Consensus 189 n~~l~~i~~--------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 189 NKYLTVIDK--------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp CTTCCEECT--------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred CCCcccCCH--------HHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 95 766554 567888 9999999999999888765 3356666654
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.5e-16 Score=154.26 Aligned_cols=173 Identities=23% Similarity=0.283 Sum_probs=144.8
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
+.++.|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++|.++.+|. +..+++|++|++++|
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence 7789999999999888776688999999999998888877 6889999999999999888765 888999999999999
Q ss_pred CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
.++.++.+..+++|++|++++|.++.+ ..++.+++|++|++++|.. ..++. +..+++|++|++++|.+...
T Consensus 123 ~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~--l~~l~~L~~L~L~~N~i~~l----- 193 (291)
T 1h6t_A 123 GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP--LAGLTKLQNLYLSKNHISDL----- 193 (291)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCBC-----
T ss_pred cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc-ccchh--hcCCCccCEEECCCCcCCCC-----
Confidence 988877788899999999999988887 5788899999999998764 44544 78899999999999877654
Q ss_pred CccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371 260 SNASLVELERLTKLATLEIEVADAEILPPN 289 (606)
Q Consensus 260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 289 (606)
..+..+++|+.|++++|.+...|..
T Consensus 194 -----~~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 194 -----RALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp -----GGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred -----hhhccCCCCCEEECcCCcccCCccc
Confidence 3478889999999998877655543
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=4e-17 Score=163.96 Aligned_cols=231 Identities=15% Similarity=0.094 Sum_probs=104.5
Q ss_pred cccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc--CCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEee
Q 007371 122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS--LPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILI 197 (606)
Q Consensus 122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~ 197 (606)
++++.|.+.++.+...+..+ ..+++|++|++++|.+.. +|..+..+++|++|++++|.+++ +..++++++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 44555555444444433332 245555555555555442 44444555555555555555443 34445555555555
Q ss_pred ecCC-cCC--cccccccCCCCCCEEecCCC-ccccc-ccHHHhhCCC-CCCEEEccCCCCCCccccCCCccchHhhccCC
Q 007371 198 LARS-TIK--QLPLEIGQLTRLQLLDLSNC-WLLEV-IAPNVISKLS-QLEELYMGNSFSGWEKVEGGSNASLVELERLT 271 (606)
Q Consensus 198 l~~~-~l~--~lp~~i~~L~~L~~L~l~~~-~~~~~-~p~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 271 (606)
+++| .++ .+|..+.++++|++|++++| ..... ++.. ++.++ +|++|++++|.... .+......++.++
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~-----~~~~l~~~~~~~~ 222 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNL-----QKSDLSTLVRRCP 222 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGS-----CHHHHHHHHHHCT
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccC-----CHHHHHHHHhhCC
Confidence 5555 344 24444455555555555554 22221 2322 44555 55555555552100 0011123444555
Q ss_pred CCCEEEEeeCC-CC-CCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhcccc
Q 007371 272 KLATLEIEVAD-AE-ILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTE 348 (606)
Q Consensus 272 ~L~~L~l~~~~-~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~ 348 (606)
+|++|++++|. ++ ..+..+.. ++|+.|++..+..........+..+++|+.|++++| . + ...+.....+++
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i----~-~~~~~~l~~~l~ 296 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V----P-DGTLQLLKEALP 296 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S----C-TTCHHHHHHHST
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c----C-HHHHHHHHhhCc
Confidence 55555555544 22 12222211 444444442222111111123556777777777775 1 1 112232324566
Q ss_pred ceecccccCcccccccc
Q 007371 349 GLWLETLEGVQSVVHEL 365 (606)
Q Consensus 349 ~L~l~~~~~~~~~~~~l 365 (606)
.|++.++......|..+
T Consensus 297 ~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 297 HLQINCSHFTTIARPTI 313 (336)
T ss_dssp TSEESCCCSCCTTCSSC
T ss_pred ceEEecccCccccCCcc
Confidence 77776665555455433
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=160.74 Aligned_cols=160 Identities=16% Similarity=0.057 Sum_probs=82.5
Q ss_pred ccccceeeccccccccc-chhHh-cCCCCCcEEEeeCCcCcc-CC----ccccCCCCCcEEEeeCCCCCC--CcccCCCC
Q 007371 121 CPCLELLHTEGDGSMQV-SDHFF-KGTEGLKVLNFTRIHFSS-LP----SSLGCLINLQTLCLDYCRLKD--IAIVGQLK 191 (606)
Q Consensus 121 l~~L~~L~~~~~~~~~~-~~~~~-~~l~~L~~L~l~~~~l~~-lp----~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~ 191 (606)
+++|++|++++|.+... |..++ ..+++|++|++++|.+.. .+ ..+..+++|++|++++|.+.. +..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 34455555555554332 22222 455666666666665554 22 223345666666666666555 34555666
Q ss_pred CCCEeeecCCcCCc---ccc--cccCCCCCCEEecCCCcccccccH---HHhhCCCCCCEEEccCCCCCCccccCCCccc
Q 007371 192 KLEILILARSTIKQ---LPL--EIGQLTRLQLLDLSNCWLLEVIAP---NVISKLSQLEELYMGNSFSGWEKVEGGSNAS 263 (606)
Q Consensus 192 ~L~~L~l~~~~l~~---lp~--~i~~L~~L~~L~l~~~~~~~~~p~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (606)
+|++|++++|++.. ++. .++.+++|++|++++|.. ..++. ..++.+++|++|++++|.+....+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p------- 241 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVN------- 241 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-------
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccch-------
Confidence 66666666665442 222 224566666666666543 22222 123555666666666666554422
Q ss_pred hHhhccC---CCCCEEEEeeCCCCCCCcc
Q 007371 264 LVELERL---TKLATLEIEVADAEILPPN 289 (606)
Q Consensus 264 ~~~l~~l---~~L~~L~l~~~~~~~~~~~ 289 (606)
..+..+ ++|++|++++|.+..+|..
T Consensus 242 -~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 269 (310)
T 4glp_A 242 -PSAPRCMWSSALNSLNLSFAGLEQVPKG 269 (310)
T ss_dssp -SCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred -hhHHhccCcCcCCEEECCCCCCCchhhh
Confidence 222333 4666666666666555544
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=1.1e-16 Score=160.73 Aligned_cols=124 Identities=20% Similarity=0.159 Sum_probs=61.3
Q ss_pred CcEEEeeCCcCccCCccccCC--CCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCc--ccccccCCCCCCEEecC
Q 007371 148 LKVLNFTRIHFSSLPSSLGCL--INLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQ--LPLEIGQLTRLQLLDLS 222 (606)
Q Consensus 148 L~~L~l~~~~l~~lp~~~~~l--~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~ 222 (606)
++.++++++.+. |..+..+ .++++|+++++.+.+ +..+.++++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 444555544443 2333333 455555555555444 3334455555555555555441 45555555666666666
Q ss_pred CCcccccccHHHhhCCCCCCEEEccCC-CCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371 223 NCWLLEVIAPNVISKLSQLEELYMGNS-FSGWEKVEGGSNASLVELERLTKLATLEIEVA 281 (606)
Q Consensus 223 ~~~~~~~~p~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 281 (606)
+|......+.. ++++++|++|++++| .+... .....++.+++|++|++++|
T Consensus 127 ~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~-------~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 127 GLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEF-------ALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHH-------HHHHHHHHCTTCCEEECCCC
T ss_pred CcccCHHHHHH-HhcCCCCCEEECCCCCCCCHH-------HHHHHHhcCCCCCEEcCCCC
Confidence 55443344444 555666666666555 22211 01133455555555555554
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=2.2e-15 Score=144.38 Aligned_cols=177 Identities=21% Similarity=0.284 Sum_probs=144.2
Q ss_pred cccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeee
Q 007371 122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILIL 198 (606)
Q Consensus 122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l 198 (606)
...++++.+++....+|..+ .++++.|++++|.+..+ +..+.++++|++|++++|.++. +..+.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45778888888888998865 46899999999999884 4578999999999999999888 466899999999999
Q ss_pred cCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEE
Q 007371 199 ARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE 277 (606)
Q Consensus 199 ~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 277 (606)
++|.++.+|. .+..+++|++|++++|.. ..+|...++.+++|++|++++|.+...++ ..++.+++|++|+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~ 161 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPA--------GAFDKLTNLQTLS 161 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccCH--------HHcCcCcCCCEEE
Confidence 9999998875 468899999999999754 46666557889999999999998887764 5688899999999
Q ss_pred EeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371 278 IEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI 333 (606)
Q Consensus 278 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 333 (606)
+++|.+..++.. .+..+++|+.|++++|.+.+.
T Consensus 162 L~~N~l~~~~~~-----------------------~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 162 LSTNQLQSVPHG-----------------------AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCSCCCTT-----------------------TTTTCTTCCEEECCSCCBCTT
T ss_pred CCCCcCCccCHH-----------------------HHhCCCCCCEEEeeCCceeCC
Confidence 999988766543 235566778888888777554
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=1.1e-15 Score=149.75 Aligned_cols=177 Identities=21% Similarity=0.204 Sum_probs=141.5
Q ss_pred ecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcc
Q 007371 107 LTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAI 186 (606)
Q Consensus 107 l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 186 (606)
+..+.+..+.....+++|+.|+++++.+..++. +..+++|++|++++|.++.++. +.++++|++|++++|.++.++.
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 107 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS 107 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG
T ss_pred hcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh
Confidence 344444444444578899999999998888865 5789999999999999999776 8999999999999999988667
Q ss_pred cCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHh
Q 007371 187 VGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVE 266 (606)
Q Consensus 187 i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (606)
+..+++|++|++++|.++.++ .+..+++|++|++++|... .++ . ++.+++|++|++++|.+.... .
T Consensus 108 l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~L~~N~l~~~~---------~- 173 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DIT-V-LSRLTKLDTLSLEDNQISDIV---------P- 173 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCCCG---------G-
T ss_pred hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCC-cch-h-hccCCCCCEEEccCCccccch---------h-
Confidence 999999999999999998874 6889999999999997654 444 3 899999999999999877653 2
Q ss_pred hccCCCCCEEEEeeCCCCCCCccccccCCcEEEE
Q 007371 267 LERLTKLATLEIEVADAEILPPNFVSVELQRYRI 300 (606)
Q Consensus 267 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 300 (606)
+..+++|+.|++++|.+..++.....++|+.|++
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred hcCCCccCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 7889999999999998876654222244444444
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=1.3e-15 Score=153.58 Aligned_cols=234 Identities=11% Similarity=0.065 Sum_probs=119.7
Q ss_pred eeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--C-cccCCCCCCCE-eeecC
Q 007371 126 LLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--I-AIVGQLKKLEI-LILAR 200 (606)
Q Consensus 126 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~-~~i~~l~~L~~-L~l~~ 200 (606)
++..+++.+..+|..+ .+++++|++++|.|+.+|. .|.++++|++|++++|.+.+ + ..+.++++|+. +.+.+
T Consensus 13 ~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3444444445555443 2445555555555555443 34555555555555555433 1 34455555443 33333
Q ss_pred CcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCC-CCCCccccCCCccchHhhccC-CCCCEEE
Q 007371 201 STIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS-FSGWEKVEGGSNASLVELERL-TKLATLE 277 (606)
Q Consensus 201 ~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l-~~L~~L~ 277 (606)
|+++.+| ..+..+++|++|++++|.. ..+|........++..|++.++ .+...+. ..+..+ ..++.|+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~--------~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIER--------NSFVGLSFESVILW 160 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECT--------TSSTTSBSSCEEEE
T ss_pred CcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccc--------cchhhcchhhhhhc
Confidence 4555443 3345555555555555432 2233221333344445554432 2222211 122222 2455566
Q ss_pred EeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceeccccc
Q 007371 278 IEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLE 356 (606)
Q Consensus 278 l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 356 (606)
+++|+++.++..... .+|+.+.+..++....--...+..+++|+.|++++|.+. .++. + .+.+|+.|.+.++.
T Consensus 161 L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~---~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--Y---GLENLKKLRARSTY 234 (350)
T ss_dssp CCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--S---SCTTCCEEECTTCT
T ss_pred cccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--h---hhccchHhhhccCC
Confidence 666666555544322 445555442222222222234567778888888887663 3322 1 25788888888888
Q ss_pred CcccccccccCCCCCCCCcEEEeec
Q 007371 357 GVQSVVHELDDGEGFPRLKHLHVKS 381 (606)
Q Consensus 357 ~~~~~~~~l~~~~~l~~L~~L~l~~ 381 (606)
..+.+|. +..+++|+.+++.+
T Consensus 235 ~l~~lP~----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 235 NLKKLPT----LEKLVALMEASLTY 255 (350)
T ss_dssp TCCCCCC----TTTCCSCCEEECSC
T ss_pred CcCcCCC----chhCcChhhCcCCC
Confidence 8888875 44889999998864
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=8.8e-16 Score=164.94 Aligned_cols=173 Identities=23% Similarity=0.293 Sum_probs=146.9
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
..++.|++++|.+..++....+++|+.|++++|.+..++. +..+++|++|+|++|.+..+| .+..+++|++|++++|
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC
Confidence 8899999999999888876689999999999998888877 688999999999999998876 6889999999999999
Q ss_pred CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371 180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG 259 (606)
Q Consensus 180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 259 (606)
.+..++.+..+++|+.|++++|.++.+ ..+..+++|++|++++|...+ +++ +..+++|++|++++|.+...
T Consensus 120 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~l----- 190 (605)
T 1m9s_A 120 GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDL----- 190 (605)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCBC-----
T ss_pred CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCCC-----
Confidence 988877788999999999999998887 578899999999999976544 443 78999999999999987654
Q ss_pred CccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371 260 SNASLVELERLTKLATLEIEVADAEILPPN 289 (606)
Q Consensus 260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 289 (606)
..+..+++|+.|++++|.+...|..
T Consensus 191 -----~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 191 -----RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp -----GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred -----hHHccCCCCCEEEccCCcCcCCccc
Confidence 4578889999999998877655443
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.5e-15 Score=139.57 Aligned_cols=148 Identities=19% Similarity=0.194 Sum_probs=84.5
Q ss_pred ccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeee
Q 007371 121 CPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILIL 198 (606)
Q Consensus 121 l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l 198 (606)
+++|+.|+++++.+..++ . +..+++|++|++++|.++.++ .+..+++|++|++++|.++. +..++.+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 344455555444444444 2 355566666666666554443 45556666666666666554 555666666666666
Q ss_pred cCCcCCc-ccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEE
Q 007371 199 ARSTIKQ-LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE 277 (606)
Q Consensus 199 ~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 277 (606)
++|.++. .|..++.+++|++|++++|...+.+|. ++.+++|++|++++|.+... ..+..+++|++|+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~----------~~l~~l~~L~~L~ 187 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY----------RGIEDFPKLNQLY 187 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC----------TTGGGCSSCCEEE
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh----------HHhccCCCCCEEE
Confidence 6666653 455566666666666666554555552 56666666666666655432 2355666666666
Q ss_pred EeeCCC
Q 007371 278 IEVADA 283 (606)
Q Consensus 278 l~~~~~ 283 (606)
+++|.+
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 666654
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=3.6e-15 Score=150.35 Aligned_cols=195 Identities=15% Similarity=0.142 Sum_probs=109.3
Q ss_pred cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCCcCC-cccc-cccCCCCCCEEecCCC
Q 007371 149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARSTIK-QLPL-EIGQLTRLQLLDLSNC 224 (606)
Q Consensus 149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~-~lp~-~i~~L~~L~~L~l~~~ 224 (606)
++++.++++++.+|..+ ..++++|++++|+++. | ..+.++++|++|++++|.+. .+|. .+.++++++++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777778888888765 3567788888877777 4 45777777777777777764 3543 3566777666544443
Q ss_pred cccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEee-CCCCCCCccccccCCcEEEEEeC
Q 007371 225 WLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEV-ADAEILPPNFVSVELQRYRIRIG 303 (606)
Q Consensus 225 ~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~ 303 (606)
+.+..+++..++.+++|++|++++|.+...+. .......++..|++.. +.+..++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~-------------- 147 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERN-------------- 147 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTT--------------
T ss_pred CcccccCchhhhhccccccccccccccccCCc--------hhhcccchhhhhhhcccccccccccc--------------
Confidence 44555544446666677777766666554443 2222333444555543 233333322
Q ss_pred CCCCCCCCCcccC-CCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecC
Q 007371 304 DESEDEFDPLLVK-SEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSC 382 (606)
Q Consensus 304 ~~~~~~~~~~l~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c 382 (606)
.+.. ...++.|++++|.+. .++. .... ..+|++|.+.++..++.+|... ++++++|++|+++++
T Consensus 148 ---------~f~~~~~~l~~L~L~~N~i~-~i~~--~~f~-~~~L~~l~l~~~n~l~~i~~~~--f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 148 ---------SFVGLSFESVILWLNKNGIQ-EIHN--SAFN-GTQLDELNLSDNNNLEELPNDV--FHGASGPVILDISRT 212 (350)
T ss_dssp ---------SSTTSBSSCEEEECCSSCCC-EECT--TSST-TEEEEEEECTTCTTCCCCCTTT--TTTEECCSEEECTTS
T ss_pred ---------chhhcchhhhhhcccccccc-CCCh--hhcc-ccchhHHhhccCCcccCCCHHH--hccCcccchhhcCCC
Confidence 1111 224556666665542 2211 1111 2456666666666666665432 226666666666666
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=151.24 Aligned_cols=178 Identities=17% Similarity=0.086 Sum_probs=143.7
Q ss_pred cCCCeEEEecCCCCc-ccCCc---ccccccceeeccccccccc----chhHhcCCCCCcEEEeeCCcCcc-CCccccCCC
Q 007371 99 RKDPIAISLTYGGIQ-VLPER---LQCPCLELLHTEGDGSMQV----SDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLI 169 (606)
Q Consensus 99 ~~~l~~L~l~~~~~~-~l~~~---~~l~~L~~L~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~ 169 (606)
...+++|++++|.+. ..+.. ..+++|++|++++|.+... +...+..+++|++|++++|.+.. .|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 377999999999984 44444 5689999999999987652 22233579999999999999988 457889999
Q ss_pred CCcEEEeeCCCCCC------CcccCCCCCCCEeeecCCcCCccccc----ccCCCCCCEEecCCCcccccccHHHhhCC-
Q 007371 170 NLQTLCLDYCRLKD------IAIVGQLKKLEILILARSTIKQLPLE----IGQLTRLQLLDLSNCWLLEVIAPNVISKL- 238 (606)
Q Consensus 170 ~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~~~p~~~i~~l- 238 (606)
+|++|++++|.+.. ...++.+++|++|++++|+++.+|.. ++.+++|++|++++|...+..|.. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 99999999999754 23347899999999999999877653 578899999999998877666766 6666
Q ss_pred --CCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCc
Q 007371 239 --SQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPP 288 (606)
Q Consensus 239 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 288 (606)
++|++|++++|.+...+. .+. ++|++|++++|.+..+|.
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~---------~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPK---------GLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCS---------CCC--SCCSCEECCSCCCCSCCC
T ss_pred CcCcCCEEECCCCCCCchhh---------hhc--CCCCEEECCCCcCCCCch
Confidence 699999999999886543 232 799999999999876654
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=8.3e-17 Score=164.90 Aligned_cols=70 Identities=17% Similarity=-0.009 Sum_probs=46.2
Q ss_pred CcccCCCCCcEEEecCccccccc--ccchhHHH-hhccccceecccccCcc----cccccccCCCCCCCCcEEEeecCC
Q 007371 312 PLLVKSEAPRLMMLKGLEKVSIL--QENDGTKM-LLQRTEGLWLETLEGVQ----SVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 312 ~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~~-~l~~L~~L~l~~~~~~~----~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
..+..+++|+.|+|++|.+...- ..+.++.. .+++|+.|++++|.... .+|..+. .++++|++|++++|+
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~--~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID--EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH--HHCTTCCEEECTTSB
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH--hcCCCceEEEccCCc
Confidence 34567788888888888764331 11222211 15889999999886555 3666551 257999999999886
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=6.8e-15 Score=135.26 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=129.9
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDY 178 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~ 178 (606)
+.+++|++++|.+..++....+++|++|++++|....++. +..+++|++|++++|.++. .|..++.+++|++|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 7899999999999998865599999999999997776653 6889999999999999987 788899999999999999
Q ss_pred CCCCC--CcccCCCCCCCEeeecCCc-CCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCC
Q 007371 179 CRLKD--IAIVGQLKKLEILILARST-IKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG 252 (606)
Q Consensus 179 ~~~~~--~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 252 (606)
|.++. +..++.+++|++|++++|. ++.+| .+..+++|++|++++|.. ..++ . +..+++|++|++++|.+.
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~-l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-G-IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-T-GGGCSSCCEEEECBC---
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-H-hccCCCCCEEEeeCcccC
Confidence 99987 7889999999999999997 88887 799999999999999764 4565 3 899999999999999764
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=3e-15 Score=160.73 Aligned_cols=179 Identities=21% Similarity=0.195 Sum_probs=145.3
Q ss_pred EEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCC
Q 007371 105 ISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI 184 (606)
Q Consensus 105 L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~ 184 (606)
+.+..+.+..+.....+++|+.|.++++.+..++. +..+++|+.|+|++|.+..+|. +..+++|++|++++|.+..+
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence 33444555555555578899999999999888875 5889999999999999999776 89999999999999999887
Q ss_pred cccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccch
Q 007371 185 AIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASL 264 (606)
Q Consensus 185 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (606)
+.+..+++|++|++++|.+..+| .+..+++|+.|++++|... .++ . ++.+++|+.|++++|.+....
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~~~--------- 169 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DIT-V-LSRLTKLDTLSLEDNQISDIV--------- 169 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC-CCG-G-GGSCTTCSEEECCSSCCCCCG---------
T ss_pred hhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC-Cch-h-hcccCCCCEEECcCCcCCCch---------
Confidence 78999999999999999999875 5889999999999997654 444 3 899999999999999887654
Q ss_pred HhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEE
Q 007371 265 VELERLTKLATLEIEVADAEILPPNFVSVELQRYRI 300 (606)
Q Consensus 265 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 300 (606)
. +..+++|+.|++++|.+..++.....++|+.|++
T Consensus 170 ~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 170 P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 204 (605)
T ss_dssp G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred h-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence 2 8889999999999998876654322355555555
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=7.5e-17 Score=165.22 Aligned_cols=238 Identities=13% Similarity=0.036 Sum_probs=133.4
Q ss_pred CCCeEEEecCCCCcc-----cCCcc-cccccceeecccccccc----cchhH------hcCCCCCcEEEeeCCcCcc---
Q 007371 100 KDPIAISLTYGGIQV-----LPERL-QCPCLELLHTEGDGSMQ----VSDHF------FKGTEGLKVLNFTRIHFSS--- 160 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~-----l~~~~-~l~~L~~L~~~~~~~~~----~~~~~------~~~l~~L~~L~l~~~~l~~--- 160 (606)
+.+++|++++|.+.. +.... .+++|++|+++++.... +|..+ +..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 567777777776633 22222 56677777766654332 23332 2566777777777777665
Q ss_pred --CCccccCCCCCcEEEeeCCCCCC--Ccc----cCCC---------CCCCEeeecCCcCC--ccc---ccccCCCCCCE
Q 007371 161 --LPSSLGCLINLQTLCLDYCRLKD--IAI----VGQL---------KKLEILILARSTIK--QLP---LEIGQLTRLQL 218 (606)
Q Consensus 161 --lp~~~~~l~~L~~L~l~~~~~~~--~~~----i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~L~~L~~ 218 (606)
+|..+.++++|++|++++|.+.. +.. +..+ ++|++|++++|.+. .+| ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 55666777777777777777654 222 3333 67777777777665 334 35566777777
Q ss_pred EecCCCccccc----ccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccC
Q 007371 219 LDLSNCWLLEV----IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVE 294 (606)
Q Consensus 219 L~l~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 294 (606)
|++++|..... +.+..+..+++|++|++++|.+.... ....+..+..+++|++|++++|.+......
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~----- 262 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLLSARGAA----- 262 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCCCHHHHH-----
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----HHHHHHHHccCCCcCEEECCCCCCchhhHH-----
Confidence 77777653311 22211566777777777777653110 011225566777777777777665432100
Q ss_pred CcEEEEEeCCCCCCCCCCcc--cCCCCCcEEEecCcccccc--cccchhHHHhhccccceecccccCccc
Q 007371 295 LQRYRIRIGDESEDEFDPLL--VKSEAPRLMMLKGLEKVSI--LQENDGTKMLLQRTEGLWLETLEGVQS 360 (606)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~ 360 (606)
.++..+ ..+++|+.|+|++|.+... ...+..+...+++|++|++++|.....
T Consensus 263 --------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 263 --------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp --------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred --------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 001112 2256677777777665431 112333433457777777777664443
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1.2e-14 Score=154.32 Aligned_cols=187 Identities=17% Similarity=0.185 Sum_probs=137.5
Q ss_pred CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371 100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 179 (606)
.+++.|++++|.+..+|... .++|++|++++|.+..+| ..+++|++|++++|.++.+|. +.+ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 57899999999998788755 378899998888888888 347889999999998888887 655 8899999998
Q ss_pred CCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371 180 RLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG 258 (606)
Q Consensus 180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 258 (606)
.++. |. .+++|++|++++|.++.+|. .+++|++|++++|... .+|. ++ ++|++|++++|.+...+. .
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~lp~--l~--~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-FLPE--LP--ESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC--CC--TTCCEEECCSSCCSSCCC-C
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-Ccch--hh--CCCCEEECcCCCCCchhh-H
Confidence 8888 44 67889999999988888886 5788888888887644 4776 44 788888888887775442 1
Q ss_pred CCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371 259 GSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL 334 (606)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 334 (606)
.. .-....+.|+.|++++|.+..+|.. +..+++|+.|+|++|.+.+..
T Consensus 199 ~~----~L~~~~~~L~~L~Ls~N~l~~lp~~------------------------l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 199 PV----RNHHSEETEIFFRCRENRITHIPEN------------------------ILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp C------------CCEEEECCSSCCCCCCGG------------------------GGGSCTTEEEECCSSSCCHHH
T ss_pred HH----hhhcccccceEEecCCCcceecCHH------------------------HhcCCCCCEEEeeCCcCCCcC
Confidence 00 0011122338888888877766654 344677788888887775543
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=2.7e-15 Score=144.47 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=132.4
Q ss_pred CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCC
Q 007371 102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 181 (606)
+..++++.+.+..++....+++|++|+++++.+..++. +..+++|++|++++|.++.+|. +.++++|++|++++|.+
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence 44455667777776655578888888888888887773 5788899999999998888776 88889999999999988
Q ss_pred CCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCc
Q 007371 182 KDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSN 261 (606)
Q Consensus 182 ~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 261 (606)
+..+.+.. .+|++|++++|.++.+| .+..+++|++|++++|.. ..++. ++.+++|++|++++|.+...
T Consensus 98 ~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N~i~~~------- 165 (263)
T 1xeu_A 98 KNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGNEITNT------- 165 (263)
T ss_dssp SCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTSCCCBC-------
T ss_pred CCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCCcCcch-------
Confidence 88333344 88999999999888875 588899999999988764 44553 78899999999998877654
Q ss_pred cchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371 262 ASLVELERLTKLATLEIEVADAEILPPN 289 (606)
Q Consensus 262 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 289 (606)
..++.+++|+.|++++|.+...|..
T Consensus 166 ---~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 166 ---GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp ---TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred ---HHhccCCCCCEEeCCCCcccCCccc
Confidence 4577888999999998877655543
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=3.2e-15 Score=138.83 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=116.5
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 181 (606)
+.++.+++.+..+|... .+++++|+++++.+..++...|..+++|++|++++|.++.+|. .+..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 34566666666666443 3477788887777777777767778888888888887777554 357778888888888877
Q ss_pred CC-C-cccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371 182 KD-I-AIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG 258 (606)
Q Consensus 182 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 258 (606)
+. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++|... .++...+..+++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee------
Confidence 77 3 4467788888888888877777654 577788888888776543 455444677788888888777443
Q ss_pred CCccchHhhccCCCCCEEEEeeCCCC-CCCcc
Q 007371 259 GSNASLVELERLTKLATLEIEVADAE-ILPPN 289 (606)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~ 289 (606)
+.+++|+.|++..|.+. .+|.+
T Consensus 162 ---------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 ---------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ---------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred ---------cCCCCHHHHHHHHHhCCceeecc
Confidence 23446666666665553 45544
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.4e-14 Score=136.47 Aligned_cols=146 Identities=19% Similarity=0.237 Sum_probs=78.3
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARS 201 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~ 201 (606)
+.++.+++....+|..+ .++|++|++++|.++.+ |..+.++++|++|++++|.+.. + ..+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44445555555555433 35555555555555553 4445555555566555555554 2 33455555666666555
Q ss_pred cCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEee
Q 007371 202 TIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEV 280 (606)
Q Consensus 202 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 280 (606)
.++.+|.. +..+++|++|++++|.. ..+|.. +..+++|++|++++|.+...+. ..+..+++|+.|++.+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKL-TELPRG-IERLTHLTHLALDQNQLKSIPH--------GAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEECTT
T ss_pred cCCccChhHhCcchhhCeEeccCCcc-cccCcc-cccCCCCCEEECCCCcCCccCH--------HHHhCCCCCCEEEeeC
Confidence 55555443 34555566666655442 355544 5555566666666555554433 3455555666666655
Q ss_pred CCC
Q 007371 281 ADA 283 (606)
Q Consensus 281 ~~~ 283 (606)
|.+
T Consensus 169 N~~ 171 (229)
T 3e6j_A 169 NPW 171 (229)
T ss_dssp SCB
T ss_pred CCc
Confidence 554
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=2.3e-16 Score=159.98 Aligned_cols=248 Identities=12% Similarity=0.033 Sum_probs=147.9
Q ss_pred EEecCCCCc-ccCCccc-ccccceeecccccccccch----hHhcCCC-CCcEEEeeCCcCcc-CCccccCC-----CCC
Q 007371 105 ISLTYGGIQ-VLPERLQ-CPCLELLHTEGDGSMQVSD----HFFKGTE-GLKVLNFTRIHFSS-LPSSLGCL-----INL 171 (606)
Q Consensus 105 L~l~~~~~~-~l~~~~~-l~~L~~L~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~-lp~~~~~l-----~~L 171 (606)
+.++.|.+. .+|.... .++|++|++++|.+...+. ..+..++ +|++|++++|.+.. .+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 456667663 4444443 3448888888887777765 5567777 78888888888776 34445543 788
Q ss_pred cEEEeeCCCCCC--Ccc----cCCC-CCCCEeeecCCcCCcccc-----cccC-CCCCCEEecCCCcccc----cccHHH
Q 007371 172 QTLCLDYCRLKD--IAI----VGQL-KKLEILILARSTIKQLPL-----EIGQ-LTRLQLLDLSNCWLLE----VIAPNV 234 (606)
Q Consensus 172 ~~L~l~~~~~~~--~~~----i~~l-~~L~~L~l~~~~l~~lp~-----~i~~-L~~L~~L~l~~~~~~~----~~p~~~ 234 (606)
++|++++|.++. +.. +..+ ++|++|++++|.++..+. .+.. .++|++|++++|.... .++..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~- 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI- 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-
Confidence 888888888765 232 4444 788888888887775443 2334 3588888888876543 23333
Q ss_pred hhCCC-CCCEEEccCCCCCCccccCCCccchHhhccC-CCCCEEEEeeCCCCC-----CCccccccCCcEEEEEeCCCCC
Q 007371 235 ISKLS-QLEELYMGNSFSGWEKVEGGSNASLVELERL-TKLATLEIEVADAEI-----LPPNFVSVELQRYRIRIGDESE 307 (606)
Q Consensus 235 i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~ 307 (606)
+..++ +|++|++++|.+..... ......+... ++|++|++++|.+.. ++..+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~--------------- 222 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNC----AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--------------- 222 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH---------------
T ss_pred HhcCCccccEeeecCCCCchhhH----HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc---------------
Confidence 45555 78888888887654432 1222344555 488888888877654 2222111
Q ss_pred CCCCCcccCCCCCcEEEecCccccccccc-chhHHHhhccccceeccccc-------CcccccccccCCCCCCCCcEEEe
Q 007371 308 DEFDPLLVKSEAPRLMMLKGLEKVSILQE-NDGTKMLLQRTEGLWLETLE-------GVQSVVHELDDGEGFPRLKHLHV 379 (606)
Q Consensus 308 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~~~~l~~L~~L~l 379 (606)
..++|+.|+|++|.+...... -......+++|+.|++++|. ....++..+. .+++|++|++
T Consensus 223 --------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~---~l~~L~~LdL 291 (362)
T 3goz_A 223 --------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP---NIQKIILVDK 291 (362)
T ss_dssp --------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST---TCCEEEEECT
T ss_pred --------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc---cCCceEEEec
Confidence 123455555555544221110 00111224667777777765 1222333333 7888889999
Q ss_pred ecCC
Q 007371 380 KSCS 383 (606)
Q Consensus 380 ~~c~ 383 (606)
++++
T Consensus 292 ~~N~ 295 (362)
T 3goz_A 292 NGKE 295 (362)
T ss_dssp TSCB
T ss_pred CCCc
Confidence 8876
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1.3e-14 Score=135.71 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=97.9
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARS 201 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~ 201 (606)
+.++..++.+..+|..+ .+++++|++++|.++.+|. .+..+++|++|++++|.++. |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45556666666666544 3567777777777776443 56677777777777777666 466777777777777777
Q ss_pred cCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEee
Q 007371 202 TIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEV 280 (606)
Q Consensus 202 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 280 (606)
.++.+|.. +..+++|++|++++|...+..|.. +..+++|++|++++|.+...++ ..+..+++|+.|++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKLQTIAK--------GTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEECCS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcCCEECH--------HHHhCCCCCCEEEeCC
Confidence 77777655 356777777777776544333433 6777777777777777666554 4566677777777777
Q ss_pred CCCC
Q 007371 281 ADAE 284 (606)
Q Consensus 281 ~~~~ 284 (606)
|.+.
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 6653
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.3e-14 Score=135.71 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=117.6
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~ 181 (606)
+.++.+++.+..+|.... ++++.|++++|.+..++...|..+++|++|++++|.++. .|..|.++++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 467778888887876543 678888888888888887777888888888888888888 477888888888898888888
Q ss_pred CC-C-cccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371 182 KD-I-AIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW 253 (606)
Q Consensus 182 ~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 253 (606)
+. | ..+..+++|++|++++|.++.+ |..+..+++|++|++++|... .++...+..+++|++|++++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcCC
Confidence 87 4 4567888888888888888876 456788888888888887644 4444447888888888888886543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=135.60 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=93.3
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC--ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP--SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILAR 200 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~ 200 (606)
++++++++.+..+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.++. +..+..+.+|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45556666666666543 344566777777666642 235666777777777776666 34666777777777777
Q ss_pred CcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371 201 STIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE 279 (606)
Q Consensus 201 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 279 (606)
|.++.+|.. +..+++|++|++++|...+..|.. +..+++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTVAP--------GAFDTLHSLSTLNLL 161 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCBCT--------TTTTTCTTCCEEECC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEECH--------HHhcCCCCCCEEEec
Confidence 766665543 666777777777776544443444 6667777777777776666544 556667777777777
Q ss_pred eCCCC
Q 007371 280 VADAE 284 (606)
Q Consensus 280 ~~~~~ 284 (606)
+|.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 66653
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=7.4e-15 Score=141.43 Aligned_cols=170 Identities=21% Similarity=0.230 Sum_probs=142.0
Q ss_pred ChHhHHHHhhhhhcCCCChhhHHHHHhhhccCCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCC
Q 007371 69 PRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGL 148 (606)
Q Consensus 69 ~~~~~~~Lf~~~~~~~~~~~~l~~~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L 148 (606)
.......+-.+.....+...++ +.++.|++++|.+..++....+++|++|++++|.+..++. +..+++|
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l---------~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L 87 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKEL---------SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKL 87 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHH---------TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred HHHHHHHhcCCCcccccchhhc---------CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCC
Confidence 3333444433333334445566 8999999999999999865699999999999999999988 6899999
Q ss_pred cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccc
Q 007371 149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLE 228 (606)
Q Consensus 149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 228 (606)
++|++++|.++.+|.... .+|++|++++|.++.++.+.++++|++|++++|+++.+| .++.+++|++|++++|...+
T Consensus 88 ~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 88 EELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred CEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 999999999999876444 999999999999999777999999999999999999987 78999999999999987554
Q ss_pred cccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 229 VIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 229 ~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
. + . +..+++|+.|++++|.+...+
T Consensus 165 ~-~-~-l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 T-G-G-LTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C-T-T-STTCCCCCEEEEEEEEEECCC
T ss_pred h-H-H-hccCCCCCEEeCCCCcccCCc
Confidence 4 3 3 899999999999999876554
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=135.17 Aligned_cols=150 Identities=16% Similarity=0.214 Sum_probs=120.7
Q ss_pred eEEEecCCCCcccCCcccccccceeeccccccccc-chhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQV-SDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCR 180 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 180 (606)
+.+++++|.+..+|... .+.++.|++++|.+..+ +...|..+++|++|++++|.++.++. .+.++.+|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47888888888888654 34568888888888877 44556889999999999999888554 78899999999999999
Q ss_pred CCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371 181 LKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE 254 (606)
Q Consensus 181 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 254 (606)
++. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+..|.. +..+++|++|++++|.+...
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSCCEECS
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCcCCcCC
Confidence 888 35688899999999999988877 567888999999999987765554555 88899999999998876543
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=4.6e-14 Score=130.94 Aligned_cols=145 Identities=23% Similarity=0.283 Sum_probs=81.0
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARS 201 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~ 201 (606)
+.+..+++....+|..+ .++|++|++++|.++.+|. .++++++|++|++++|.++. + ..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34455555555566533 4566667777666666443 34666666666666666665 3 34566666666666666
Q ss_pred cCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEee
Q 007371 202 TIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEV 280 (606)
Q Consensus 202 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 280 (606)
.++.+|.. +..+++|++|++++|.. ..++...++.+++|++|++++|.+...+. ..++.+++|++|++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPD--------GVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEECCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCCccceeCH--------HHhccCCCccEEEecC
Confidence 66655543 45666666666666543 33333334556666666666655544332 2344445555555544
Q ss_pred C
Q 007371 281 A 281 (606)
Q Consensus 281 ~ 281 (606)
|
T Consensus 158 N 158 (208)
T 2o6s_A 158 N 158 (208)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=3.9e-14 Score=133.44 Aligned_cols=150 Identities=21% Similarity=0.267 Sum_probs=128.2
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 181 (606)
..++.+++.+..+|.... ++|++|++++|.+..++...|..+++|++|++++|.+..+|. .+..+++|++|++++|.+
T Consensus 22 ~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 467888888888887554 789999999999988877777899999999999999988775 468999999999999999
Q ss_pred CC-C-cccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371 182 KD-I-AIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE 254 (606)
Q Consensus 182 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 254 (606)
+. + ..+..+.+|++|++++|.++.+|..+..+++|++|++++|.. ..++...+..+++|++|++++|.+...
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 88 4 557899999999999999999999999999999999999764 466655588999999999999976543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1.6e-14 Score=146.20 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=68.8
Q ss_pred EEEecCCCCcccCCcccccccceeecccccccccchhHhc-CCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCC
Q 007371 104 AISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFK-GTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 104 ~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 181 (606)
.++++++.+..+|... .+.++.|++++|.+..++...|. ++++|++|++++|.++.++ ..+.++++|++|++++|.+
T Consensus 22 ~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 4445555554444432 12344555555555544444443 4555555555555555433 2345555555555555554
Q ss_pred CC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHh---hCCCCCCEEEccCCCCCCc
Q 007371 182 KD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVI---SKLSQLEELYMGNSFSGWE 254 (606)
Q Consensus 182 ~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i---~~l~~L~~L~l~~~~~~~~ 254 (606)
+. +..+..+.+|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+ ..+++|++|++++|.+...
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 44 23344555555555555555443 2344455555555555433 233443322 3344555555555544433
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=3.7e-14 Score=150.62 Aligned_cols=191 Identities=18% Similarity=0.132 Sum_probs=130.3
Q ss_pred ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCC
Q 007371 123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARS 201 (606)
Q Consensus 123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~ 201 (606)
+++.|+++++.+..+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++. |. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 7778888877777777755 367888888888887777 456788888888888777 44 554 7888888888
Q ss_pred cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371 202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA 281 (606)
Q Consensus 202 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 281 (606)
.++.+|. .+++|++|++++|... .+|. .+++|++|++++|.+...+ . +. ++|+.|++++|
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp---------~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTFLP---------E-LP--ESLEALDVSTN 190 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC---------C-CC--TTCCEEECCSS
T ss_pred cCCCCCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCCcc---------h-hh--CCCCEEECcCC
Confidence 8877776 5778888888876543 4654 4677888888888776643 2 33 67888888887
Q ss_pred CCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371 282 DAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV 361 (606)
Q Consensus 282 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 361 (606)
.+..+|. +.. +| ......|+.|+|++|.+. . .|.++.. +++|+.|++++|.....+
T Consensus 191 ~L~~lp~-~~~-~L------------------~~~~~~L~~L~Ls~N~l~-~--lp~~l~~-l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 191 LLESLPA-VPV-RN------------------HHSEETEIFFRCRENRIT-H--IPENILS-LDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCSSCCC-CC---------------------------CCEEEECCSSCCC-C--CCGGGGG-SCTTEEEECCSSSCCHHH
T ss_pred CCCchhh-HHH-hh------------------hcccccceEEecCCCcce-e--cCHHHhc-CCCCCEEEeeCCcCCCcC
Confidence 7776665 221 11 012233578888887764 2 3445555 688888888888777766
Q ss_pred ccccc
Q 007371 362 VHELD 366 (606)
Q Consensus 362 ~~~l~ 366 (606)
|..+.
T Consensus 247 p~~l~ 251 (571)
T 3cvr_A 247 RESLS 251 (571)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=7.7e-14 Score=124.61 Aligned_cols=139 Identities=21% Similarity=0.163 Sum_probs=104.9
Q ss_pred CCCCCcEEEeeCCcCc--cCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCc-ccccccCCCCCCEEe
Q 007371 144 GTEGLKVLNFTRIHFS--SLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQ-LPLEIGQLTRLQLLD 220 (606)
Q Consensus 144 ~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~ 220 (606)
..++|++|++++|.++ .+|..+..+++|++|++++|.++....+..+++|++|++++|.++. +|..+.++++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3577888888888887 5887778888888888888887777777888888888888888886 666666788888888
Q ss_pred cCCCccccccc--HHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371 221 LSNCWLLEVIA--PNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPN 289 (606)
Q Consensus 221 l~~~~~~~~~p--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 289 (606)
+++|.. ..+| .. ++.+++|++|++++|.+...+. .....+..+++|++|++.+|....+|..
T Consensus 102 Ls~N~l-~~~~~~~~-l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKL-KDISTLEP-LKKLECLKSLDLFNCEVTNLND-----YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSC-CSSGGGGG-GSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCcc-CcchhHHH-HhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 888754 4443 33 7888888888888887765541 0013677888888888888888777654
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=5.4e-15 Score=149.83 Aligned_cols=199 Identities=11% Similarity=0.138 Sum_probs=144.9
Q ss_pred CCCeEEEecCCCCcccCC-----cc-ccc-ccceeecccccccccchhHhcCC-----CCCcEEEeeCCcCccCC-cc--
Q 007371 100 KDPIAISLTYGGIQVLPE-----RL-QCP-CLELLHTEGDGSMQVSDHFFKGT-----EGLKVLNFTRIHFSSLP-SS-- 164 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~-----~~-~l~-~L~~L~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~lp-~~-- 164 (606)
..+++|++++|.+...+. .. .++ +|++|++++|.+.......+..+ ++|++|++++|.++..+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999977663 22 677 89999999998887654444544 99999999999998743 32
Q ss_pred --ccCC-CCCcEEEeeCCCCCC-C-cc----cCC-CCCCCEeeecCCcCC-----cccccccCCC-CCCEEecCCCcccc
Q 007371 165 --LGCL-INLQTLCLDYCRLKD-I-AI----VGQ-LKKLEILILARSTIK-----QLPLEIGQLT-RLQLLDLSNCWLLE 228 (606)
Q Consensus 165 --~~~l-~~L~~L~l~~~~~~~-~-~~----i~~-l~~L~~L~l~~~~l~-----~lp~~i~~L~-~L~~L~l~~~~~~~ 228 (606)
+..+ ++|++|++++|.++. + .. +.. ..+|++|++++|.++ .++..+..++ +|++|++++|....
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 4455 899999999999877 2 33 444 369999999999888 5566667776 99999999987655
Q ss_pred cccHH---HhhCC-CCCCEEEccCCCCCCccccCCCccchHhhccC-CCCCEEEEeeCCCCCCCccc------cccCCcE
Q 007371 229 VIAPN---VISKL-SQLEELYMGNSFSGWEKVEGGSNASLVELERL-TKLATLEIEVADAEILPPNF------VSVELQR 297 (606)
Q Consensus 229 ~~p~~---~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~------~~~~L~~ 297 (606)
..+.. .+..+ ++|++|++++|.+..... ......+... ++|++|++++|.+...+... ..++|+.
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSY----AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 54432 24455 599999999998765321 1233556664 59999999999987655421 1155666
Q ss_pred EEEEe
Q 007371 298 YRIRI 302 (606)
Q Consensus 298 L~l~~ 302 (606)
|++..
T Consensus 258 L~L~~ 262 (362)
T 3goz_A 258 VYLDY 262 (362)
T ss_dssp EEEEH
T ss_pred EEecc
Confidence 66643
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=3.5e-16 Score=167.04 Aligned_cols=179 Identities=20% Similarity=0.202 Sum_probs=123.6
Q ss_pred CCCeEEEecCCCCcccCCcc-cccccceeeccccc-------------ccccchhHhcCCCCCcEEE-eeCCcCccCCc-
Q 007371 100 KDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDG-------------SMQVSDHFFKGTEGLKVLN-FTRIHFSSLPS- 163 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~l~~lp~- 163 (606)
+.+++|++++|.++.+|..+ .+++|+.|+++++. ....+...+..+++|+.|+ ++.+.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 56677788888887777766 77788887765553 2223333346667777776 44443322211
Q ss_pred -----cccC--CCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhh
Q 007371 164 -----SLGC--LINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVIS 236 (606)
Q Consensus 164 -----~~~~--l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~ 236 (606)
.+.. ...|++|++++|.++.++.++.+++|++|++++|.++.+|..++++++|++|++++|... .+| . ++
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~-l~ 505 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G-VA 505 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G-GT
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c-cC
Confidence 0111 124788888888887733388888888888888888888888888888888888886644 466 4 78
Q ss_pred CCCCCCEEEccCCCCCCcc-ccCCCccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371 237 KLSQLEELYMGNSFSGWEK-VEGGSNASLVELERLTKLATLEIEVADAEILPPN 289 (606)
Q Consensus 237 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 289 (606)
.+++|++|++++|.+.... + ..++.+++|+.|++++|.+..+|..
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p--------~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAI--------QPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTT--------GGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCcEEECCCCCCCCCCCc--------HHHhcCCCCCEEEecCCcCCCCccH
Confidence 8888888888888877663 3 6778888888888888887766553
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.2e-13 Score=139.74 Aligned_cols=152 Identities=22% Similarity=0.272 Sum_probs=131.9
Q ss_pred CCCeEEEecCCCCcccCCcc---cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEE
Q 007371 100 KDPIAISLTYGGIQVLPERL---QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLC 175 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~---~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~ 175 (606)
..++.|++++|.+..++... .+++|++|++++|.+..++...|..+++|++|++++|.++.++. .+.++.+|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 45789999999998877654 78999999999999999998878999999999999999999654 689999999999
Q ss_pred eeCCCCCC--CcccCCCCCCCEeeecCCcCCcccccc----cCCCCCCEEecCCCcccccccHHHhhCCCC--CCEEEcc
Q 007371 176 LDYCRLKD--IAIVGQLKKLEILILARSTIKQLPLEI----GQLTRLQLLDLSNCWLLEVIAPNVISKLSQ--LEELYMG 247 (606)
Q Consensus 176 l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~--L~~L~l~ 247 (606)
+++|.+.. +..+..+++|++|++++|.++.+|..+ ..+++|++|++++|. +..+|...+..++. |+.|+++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEec
Confidence 99999988 678999999999999999999999876 679999999999976 45677655888887 4889999
Q ss_pred CCCCC
Q 007371 248 NSFSG 252 (606)
Q Consensus 248 ~~~~~ 252 (606)
+|.+.
T Consensus 198 ~N~~~ 202 (361)
T 2xot_A 198 NNPLE 202 (361)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 88764
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=2.3e-13 Score=121.47 Aligned_cols=131 Identities=22% Similarity=0.192 Sum_probs=86.0
Q ss_pred cccceeeccccccc--ccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEee
Q 007371 122 PCLELLHTEGDGSM--QVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILI 197 (606)
Q Consensus 122 ~~L~~L~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~ 197 (606)
++|++|++++|.+. .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555555544 45543 35667777777777777666 566777777777777777666 34445577777777
Q ss_pred ecCCcCCccc--ccccCCCCCCEEecCCCcccccccH---HHhhCCCCCCEEEccCCCCCCcc
Q 007371 198 LARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAP---NVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 198 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~---~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
+++|.++.+| ..+..+++|++|++++|... .+|. ..+..+++|++|++++|.....+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777777665 56777777777777776543 3343 23777788888887777665443
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=7.6e-13 Score=120.82 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=85.9
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCcc--ccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSS--LGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILAR 200 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~ 200 (606)
++++++++.+..+|..+ ..++++|++++|.++.++.. ++.+++|++|++++|.++. |..+..+.+|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56666666666666654 23677777777777775543 6777777777777777776 46677777777777777
Q ss_pred CcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371 201 STIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW 253 (606)
Q Consensus 201 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 253 (606)
|.++.++.. +..+++|++|++++|...+..|.. ++.+++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccC
Confidence 777766543 667777777777776655555544 6777777777777776543
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=4.2e-13 Score=117.18 Aligned_cols=106 Identities=22% Similarity=0.169 Sum_probs=53.2
Q ss_pred CCCcEEEeeCCcCc--cCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCc-ccccccCCCCCCEEecC
Q 007371 146 EGLKVLNFTRIHFS--SLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQ-LPLEIGQLTRLQLLDLS 222 (606)
Q Consensus 146 ~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~ 222 (606)
++|+.|++++|.++ .+|..++.+++|++|++++|.++....++++++|++|++++|.++. +|..++.+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 44555555555554 3555455555555555555554444445555555555555555554 44444445555555555
Q ss_pred CCccccccc--HHHhhCCCCCCEEEccCCCCCC
Q 007371 223 NCWLLEVIA--PNVISKLSQLEELYMGNSFSGW 253 (606)
Q Consensus 223 ~~~~~~~~p--~~~i~~l~~L~~L~l~~~~~~~ 253 (606)
+|... .++ .. ++.+++|++|++++|.+..
T Consensus 97 ~N~i~-~~~~~~~-~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 97 GNKIK-DLSTIEP-LKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp TSCCC-SHHHHGG-GGGCTTCCEEECTTCGGGG
T ss_pred CCcCC-ChHHHHH-HhhCCCCCEEeCcCCcccc
Confidence 54422 221 22 4555555555555554433
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=3.9e-13 Score=117.39 Aligned_cols=125 Identities=25% Similarity=0.239 Sum_probs=102.7
Q ss_pred cccccceeeccccccc--ccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCE
Q 007371 120 QCPCLELLHTEGDGSM--QVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEI 195 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~ 195 (606)
..++++.|+++++.+. .+|.. +..+++|++|++++|.++.+ ..++++++|++|++++|.++. |..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3468999999988877 67764 47899999999999998888 778899999999999999887 455667999999
Q ss_pred eeecCCcCCccc--ccccCCCCCCEEecCCCcccccccH---HHhhCCCCCCEEEcc
Q 007371 196 LILARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAP---NVISKLSQLEELYMG 247 (606)
Q Consensus 196 L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~---~~i~~l~~L~~L~l~ 247 (606)
|++++|.++.+| ..++.+++|++|++++|... .+|. ..++.+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 999999998765 78899999999999997654 4443 348889999998765
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=6.5e-14 Score=154.31 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=90.1
Q ss_pred CCCeEEEecCCCCcccCCcc-cccccceee-----cccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcE
Q 007371 100 KDPIAISLTYGGIQVLPERL-QCPCLELLH-----TEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQT 173 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 173 (606)
..++.|++..+.+...+... ...+|+.+. ...+... ++...|..++.|++|+|++|.+..+|..+.++.+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 44667777777665544333 333333333 2233333 4445567788888888888888888887778888888
Q ss_pred EEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCC
Q 007371 174 LCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG 252 (606)
Q Consensus 174 L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 252 (606)
|+|++|.++. |..++++.+|++|+|++|.++.+|..+++|++|++|++++|. ++.+|.. ++++++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 8888888777 777888888888888888888888888888888888888865 4577777 788888888888888776
Q ss_pred Cccc
Q 007371 253 WEKV 256 (606)
Q Consensus 253 ~~~~ 256 (606)
..++
T Consensus 330 ~~~p 333 (727)
T 4b8c_D 330 KQFL 333 (727)
T ss_dssp SHHH
T ss_pred CCCh
Confidence 6554
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=8.4e-13 Score=118.77 Aligned_cols=134 Identities=14% Similarity=0.194 Sum_probs=72.1
Q ss_pred cCCCCCcEEEeeCCcCccCCccccCCC-CCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccc-cCCCCCCEEe
Q 007371 143 KGTEGLKVLNFTRIHFSSLPSSLGCLI-NLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEI-GQLTRLQLLD 220 (606)
Q Consensus 143 ~~l~~L~~L~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~ 220 (606)
.++.+|++|++++|.++.+|. +..+. +|++|++++|.++.+..++.+++|++|++++|.++.+|..+ +.+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 445556666666665555543 33333 56666666665555445555666666666666666555444 5566666666
Q ss_pred cCCCcccccccH-HHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCC
Q 007371 221 LSNCWLLEVIAP-NVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADA 283 (606)
Q Consensus 221 l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 283 (606)
+++|.. +.+|. ..++.+++|++|++++|.+...+. .....++.+++|+.|+++.+..
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~-----~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKH-----YRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTT-----HHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHh-----HHHHHHHHCCccceeCCCcCCH
Confidence 666443 44443 115566666666666665543321 0011355666666666665543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=2e-12 Score=118.05 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=113.0
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchh-HhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDH-FFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~ 180 (606)
+.++++++.++.+|.... .++++|++++|.+..++.. +|..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 678999999999988652 3899999999999888764 568999999999999999994 7889999999999999999
Q ss_pred CCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCccccccc
Q 007371 181 LKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIA 231 (606)
Q Consensus 181 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p 231 (606)
++. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|......+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 998 46699999999999999999966 7789999999999999988765544
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=2.8e-12 Score=117.03 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=87.6
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCc
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARST 202 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~ 202 (606)
++++.+++.+..+|..+ .++|++|++++|.++.+|..+.++.+|++|++++|.++. +..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 45666667777777654 357778888888877777777778888888888887777 3567777888888888877
Q ss_pred CCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCC
Q 007371 203 IKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFS 251 (606)
Q Consensus 203 l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 251 (606)
++.+|. .+..+++|++|++++|.. ..+|...+..+++|++|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCe
Confidence 776654 467777777777777553 455554466777777777777654
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.8e-13 Score=150.71 Aligned_cols=147 Identities=19% Similarity=0.185 Sum_probs=115.4
Q ss_pred ecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C
Q 007371 107 LTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I 184 (606)
Q Consensus 107 l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~ 184 (606)
+..|.+...+... .+++|+.|++++|.+..+|..++ ++++|++|+|++|.++.+|..++++++|++|+|++|.++. |
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 286 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286 (727)
T ss_dssp --------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC
Confidence 3334443334444 78899999999999999998885 7999999999999999999999999999999999999988 8
Q ss_pred cccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCC-CCEEEccCCCCCCcc
Q 007371 185 AIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQ-LEELYMGNSFSGWEK 255 (606)
Q Consensus 185 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~-L~~L~l~~~~~~~~~ 255 (606)
..++++.+|++|+|++|.++.+|..++++++|++|++++|...+.+|.. +..+.. +..+++++|.+....
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCC
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcC
Confidence 8999999999999999999999999999999999999998877777765 443321 223566667665444
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=6.5e-12 Score=114.56 Aligned_cols=123 Identities=24% Similarity=0.333 Sum_probs=109.3
Q ss_pred eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCC
Q 007371 103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 181 (606)
+.++++++.+..+|... .+++++|++++|.+..+|.. |..+++|++|++++|.++.++ ..|.++.+|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 47889999999888755 36899999999999999954 589999999999999999965 5789999999999999999
Q ss_pred CC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCccc
Q 007371 182 KD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLL 227 (606)
Q Consensus 182 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 227 (606)
+. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88 46799999999999999999999874 788999999999998654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.4e-12 Score=117.31 Aligned_cols=130 Identities=18% Similarity=0.117 Sum_probs=94.7
Q ss_pred ccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-Ccc-cCCCCCCCEe
Q 007371 119 LQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAI-VGQLKKLEIL 196 (606)
Q Consensus 119 ~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~-i~~l~~L~~L 196 (606)
..+++|+.|++++|.+..++. +....++|++|++++|.++.+ ..++.+++|++|++++|.++. |+. +..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 356677777777777666654 323334888888888888777 567788888888888888777 543 4788888888
Q ss_pred eecCCcCCcccc--cccCCCCCCEEecCCCcccccccHH---HhhCCCCCCEEEccCCCC
Q 007371 197 ILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPN---VISKLSQLEELYMGNSFS 251 (606)
Q Consensus 197 ~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~---~i~~l~~L~~L~l~~~~~ 251 (606)
++++|.+..+|. .+..+++|++|++++|... .+|.. .++.+++|+.|+++.+..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 888888887776 7778888888888886643 45542 477888888888877754
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=8.5e-12 Score=112.29 Aligned_cols=127 Identities=20% Similarity=0.330 Sum_probs=83.1
Q ss_pred cceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecC
Q 007371 124 LELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILAR 200 (606)
Q Consensus 124 L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~ 200 (606)
.+.++.+++....+|..+ .++|++|++++|.++.+|. .++.+++|++|++++|.++. + ..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 355556666666666543 3567777777777766544 35667777777777777766 3 4456777777777777
Q ss_pred CcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371 201 STIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE 254 (606)
Q Consensus 201 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 254 (606)
|.++.+|.. +..+++|++|++++|.. ..+|...+..+++|++|++++|.+...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCeecc
Confidence 777766654 46677777777777643 355555456677777777777766544
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=1.3e-12 Score=139.45 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=119.7
Q ss_pred cccccceee-cccccccccchhHh-----c--CCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCC
Q 007371 120 QCPCLELLH-TEGDGSMQVSDHFF-----K--GTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQL 190 (606)
Q Consensus 120 ~l~~L~~L~-~~~~~~~~~~~~~~-----~--~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l 190 (606)
.+++|+.|+ +..+....++...+ . ....|++|++++|.++.+|. ++++++|++|++++|.++. |..++++
T Consensus 407 ~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l 485 (567)
T 1dce_A 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAAL 485 (567)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGC
T ss_pred HHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcC
Confidence 667777777 55543333322100 0 12359999999999999987 9999999999999999999 8999999
Q ss_pred CCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccc-cHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhcc
Q 007371 191 KKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI-APNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELER 269 (606)
Q Consensus 191 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 269 (606)
++|++|++++|.++.+| .++++++|++|++++|...+.. |.. ++.+++|++|++++|.+...++. ....+..
T Consensus 486 ~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~~ 558 (567)
T 1dce_A 486 RCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEGI-----QERLAEM 558 (567)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSSC-----TTHHHHH
T ss_pred CCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCccH-----HHHHHHH
Confidence 99999999999999998 8999999999999998765554 777 99999999999999998776541 1233455
Q ss_pred CCCCCEEEE
Q 007371 270 LTKLATLEI 278 (606)
Q Consensus 270 l~~L~~L~l 278 (606)
+++|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 788888853
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=4e-11 Score=107.82 Aligned_cols=126 Identities=23% Similarity=0.286 Sum_probs=106.4
Q ss_pred CcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCC
Q 007371 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNC 224 (606)
Q Consensus 148 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 224 (606)
.+.++++++.++.+|..+. .+|++|++++|.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4788999999999886554 689999999999988 4 5678999999999999999988765 589999999999997
Q ss_pred cccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 225 WLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 225 ~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
... .+|...++.+++|++|++++|.+...++ ..+..+++|++|++++|.+.
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPD--------GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEECCSSCBC
T ss_pred Ccc-ccCHHHhhCCcccCEEECcCCcceEeCH--------HHhcCCcccCEEEecCCCee
Confidence 654 5555547899999999999999886664 45688999999999988764
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=3.9e-13 Score=123.49 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=53.5
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA 199 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~ 199 (606)
.+++|++|++++|.+..+| . +..+++|++|++++|.++.+|..+..+++|++|++++|.++.++.+..+++|++|+++
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES
T ss_pred cCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC
Confidence 4455555555555555544 2 3445555555555555555555444455555555555555552244455555555555
Q ss_pred CCcCCcccc--cccCCCCCCEEecCCCc
Q 007371 200 RSTIKQLPL--EIGQLTRLQLLDLSNCW 225 (606)
Q Consensus 200 ~~~l~~lp~--~i~~L~~L~~L~l~~~~ 225 (606)
+|.++.+|. .+..+++|++|++++|.
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 555554432 44555555555555544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=2.7e-13 Score=124.55 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=107.4
Q ss_pred ccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccC
Q 007371 134 SMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQ 212 (606)
Q Consensus 134 ~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 212 (606)
+..+|.. +..+++|++|++++|.++.+| .+.++++|++|++++|.++. |..+..+++|++|++++|.++.+| .++.
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 3445544 478999999999999999888 88999999999999999888 777777899999999999999887 6888
Q ss_pred CCCCCEEecCCCcccccccH-HHhhCCCCCCEEEccCCCCCCccccCC--CccchHhhccCCCCCEEE
Q 007371 213 LTRLQLLDLSNCWLLEVIAP-NVISKLSQLEELYMGNSFSGWEKVEGG--SNASLVELERLTKLATLE 277 (606)
Q Consensus 213 L~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~l~~l~~L~~L~ 277 (606)
+++|++|++++|.. ..++. ..+..+++|++|++++|.+....+... .......+..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999998754 44443 338899999999999987654432100 001113477888888886
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=1e-10 Score=116.52 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=49.1
Q ss_pred CCCeEEEecCCCCc--------------------ccCCcc--c--------ccccceeecccccccccchhHhcCCCCCc
Q 007371 100 KDPIAISLTYGGIQ--------------------VLPERL--Q--------CPCLELLHTEGDGSMQVSDHFFKGTEGLK 149 (606)
Q Consensus 100 ~~l~~L~l~~~~~~--------------------~l~~~~--~--------l~~L~~L~~~~~~~~~~~~~~~~~l~~L~ 149 (606)
++++.|++++|.+. .++... . +++|+.+.+.+ .+..++...|..+++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 77999999999886 233332 4 66677777666 56666666667777777
Q ss_pred EEEeeCCcCccCC-ccccCCCCCcEEEeeC
Q 007371 150 VLNFTRIHFSSLP-SSLGCLINLQTLCLDY 178 (606)
Q Consensus 150 ~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~ 178 (606)
.+++..|.+..++ ..|..+.++.++....
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 7777777665533 3455555555554433
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=4.1e-10 Score=100.66 Aligned_cols=102 Identities=23% Similarity=0.391 Sum_probs=57.7
Q ss_pred cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCc
Q 007371 149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCW 225 (606)
Q Consensus 149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 225 (606)
+.++++++.+..+|..+. .+|++|++++|.++. |..+.++++|++|++++|+++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455666666655555443 556666666666555 34556666666666666666666554 3556666666666644
Q ss_pred ccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371 226 LLEVIAPNVISKLSQLEELYMGNSFSGW 253 (606)
Q Consensus 226 ~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 253 (606)
. ..+|...++.+++|++|++++|.+..
T Consensus 93 l-~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 L-KSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp C-CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred c-ceeCHHHhccccCCCEEEeCCCCccc
Confidence 3 34444335566666666666665443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=3.8e-10 Score=100.51 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=52.3
Q ss_pred cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCc
Q 007371 149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCW 225 (606)
Q Consensus 149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 225 (606)
++++++++.++.+|..+. .+|++|++++|.++. +..+.++.+|++|++++|+++.+|.. +..+++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 445555555555554442 455555555555554 34455555555555555555555443 2455555555555543
Q ss_pred ccccccHHHhhCCCCCCEEEccCCCCC
Q 007371 226 LLEVIAPNVISKLSQLEELYMGNSFSG 252 (606)
Q Consensus 226 ~~~~~p~~~i~~l~~L~~L~l~~~~~~ 252 (606)
. ..+|...++.+++|++|++++|.+.
T Consensus 90 l-~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 L-KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 2 3333333555555555555555443
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=3.7e-10 Score=100.91 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=81.7
Q ss_pred ceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCC
Q 007371 125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARS 201 (606)
Q Consensus 125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~ 201 (606)
+.++++++.+..+|..+ .++|++|++++|.++.+ |..++++++|++|++++|.++. | ..+.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777888888888765 37888999999988885 6678888999999999998888 4 44688899999999999
Q ss_pred cCCccccc-ccCCCCCCEEecCCCccc
Q 007371 202 TIKQLPLE-IGQLTRLQLLDLSNCWLL 227 (606)
Q Consensus 202 ~l~~lp~~-i~~L~~L~~L~l~~~~~~ 227 (606)
.++.+|.. +..+++|++|++++|...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 88888875 788999999999887643
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=4.2e-10 Score=112.06 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=56.5
Q ss_pred CCCCcEEEeeCCcCccCCccccC-CCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccc-cccC--------C
Q 007371 145 TEGLKVLNFTRIHFSSLPSSLGC-LINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPL-EIGQ--------L 213 (606)
Q Consensus 145 l~~L~~L~l~~~~l~~lp~~~~~-l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~--------L 213 (606)
+.+++.|.++++--..-...+.. +.+|++|++++|.+.. ...-+.+..++.+.+..+ .+|. .+.+ +
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 45677777776521110112222 6778888888887663 111112222344444433 2332 2334 7
Q ss_pred CCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371 214 TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 214 ~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
++|+.|.+.+ .+..++...+..+++|+.+++..+.+....
T Consensus 101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~ 140 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLL 140 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEEC
T ss_pred CCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccc
Confidence 7777777766 345566555677777777777766654443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=7.8e-10 Score=98.46 Aligned_cols=104 Identities=21% Similarity=0.211 Sum_probs=85.0
Q ss_pred ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeec
Q 007371 123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILA 199 (606)
Q Consensus 123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~ 199 (606)
..++++++++.+..+|..+ .++|++|++++|.++.+ |..+.++.+|++|++++|.++. + ..+.++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567788888888888755 47889999999999885 6678889999999999999888 4 456889999999999
Q ss_pred CCcCCccccc-ccCCCCCCEEecCCCccccc
Q 007371 200 RSTIKQLPLE-IGQLTRLQLLDLSNCWLLEV 229 (606)
Q Consensus 200 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~ 229 (606)
+|.++.+|.. +..+++|++|++++|.....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999988764 78899999999998765433
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=2.9e-10 Score=114.69 Aligned_cols=192 Identities=16% Similarity=0.133 Sum_probs=93.6
Q ss_pred CCCCChHhHHHHhhhhhcCCCChhhHHHHHhhhccCCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcC
Q 007371 65 IDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKG 144 (606)
Q Consensus 65 l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~ 144 (606)
.+.++.+++.++|.-... . +-..+..++. +.++.|++++|.+...... .+...+...
T Consensus 43 ~~~~~~~~~lnl~~cl~e-~----~~~~l~~~~~-~~L~~L~Ls~n~l~~~~~~-----------------~l~~~L~~~ 99 (372)
T 3un9_A 43 RQVLPPSELLDHLFFHYE-F----QNQRFSAEVL-SSLRQLNLAGVRMTPVKCT-----------------VVAAVLGSG 99 (372)
T ss_dssp CCCSCHHHHHHHHHHHHH-H----HTHHHHHHHH-TTCCEEECTTSCCCHHHHH-----------------HHHHHHSSC
T ss_pred ccCCChhhhHHHHHHHHH-h----cCHHHHHHHH-hhCCEEEecCCCCCHHHHH-----------------HHHHHHhhC
Confidence 345777778887764211 0 0011222222 6688888888877432110 011111112
Q ss_pred CCCCcEEEeeCCcCcc--CCccccCCCCCcEEEeeCCCCCC--Cccc-----CCCCCCCEeeecCCcCC-----cccccc
Q 007371 145 TEGLKVLNFTRIHFSS--LPSSLGCLINLQTLCLDYCRLKD--IAIV-----GQLKKLEILILARSTIK-----QLPLEI 210 (606)
Q Consensus 145 l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~--~~~i-----~~l~~L~~L~l~~~~l~-----~lp~~i 210 (606)
.++|++|++++|.+.. +......+.+|++|++++|.+++ ...+ ...++|++|++++|.++ .++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 2455555555555543 11122234455566666665544 2222 23455666666666554 234444
Q ss_pred cCCCCCCEEecCCCcccc----cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 211 GQLTRLQLLDLSNCWLLE----VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 211 ~~L~~L~~L~l~~~~~~~----~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
..+++|++|++++|.... .++.. +...++|++|++++|.+..... ......+...++|++|++++|.+.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~----~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAA----LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHHH----HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHHH----HHHHHHHHhCCCCCEEeccCCCCC
Confidence 556666666666654322 12222 4555666666666665543211 122244555566677777666654
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=9e-08 Score=97.44 Aligned_cols=233 Identities=13% Similarity=0.123 Sum_probs=104.2
Q ss_pred ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeec
Q 007371 123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILA 199 (606)
Q Consensus 123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~ 199 (606)
+|+.+.+.++ +..++...|.++ +|+.+.+.. .+..++ ..|.++.+|+.+++..+.++. + ..+. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4555554443 444444445442 455555553 344422 345555555555555555444 2 2222 3555555554
Q ss_pred CCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEE
Q 007371 200 RSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEI 278 (606)
Q Consensus 200 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 278 (606)
. .++.++. .+.++++|+.+.+..+ +..++...+.+ .+|+.+.+..+ +..... ..+.++++|+.+.+
T Consensus 212 ~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~--------~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 212 V-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTNIAS--------RAFYYCPELAEVTT 278 (401)
T ss_dssp T-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCEECT--------TTTTTCTTCCEEEE
T ss_pred C-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccEECh--------hHhhCCCCCCEEEe
Confidence 3 2444432 3445555555555542 33344333333 45555555322 222211 34455555555555
Q ss_pred eeCCCC-----CCCcccc--ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhcccccee
Q 007371 279 EVADAE-----ILPPNFV--SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLW 351 (606)
Q Consensus 279 ~~~~~~-----~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~ 351 (606)
..+... .++.... ..+|+.+.+. +....-....+..|.+|+.+.+..+ ...+. ......+ +|+.+.
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~--~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIPAN--VTQIN--FSAFNNT-GIKEVK 351 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEECTT--CCEEC--TTSSSSS-CCCEEE
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEECcc--ccEEc--HHhCCCC-CCCEEE
Confidence 544332 2333221 1455555442 1111112234555666666666442 11111 1111123 677777
Q ss_pred cccccCcccccccccCCCCCC-CCcEEEeecC
Q 007371 352 LETLEGVQSVVHELDDGEGFP-RLKHLHVKSC 382 (606)
Q Consensus 352 l~~~~~~~~~~~~l~~~~~l~-~L~~L~l~~c 382 (606)
+.++.........|. +++ +++.|.+-..
T Consensus 352 l~~n~~~~l~~~~F~---~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 352 VEGTTPPQVFEKVWY---GFPDDITVIRVPAE 380 (401)
T ss_dssp ECCSSCCBCCCSSCC---CSCTTCCEEEECGG
T ss_pred EcCCCCccccccccc---CCCCCccEEEeCHH
Confidence 776543322222232 453 6677776543
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=2.1e-07 Score=94.63 Aligned_cols=236 Identities=12% Similarity=0.065 Sum_probs=166.0
Q ss_pred ccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEee
Q 007371 121 CPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILI 197 (606)
Q Consensus 121 l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~ 197 (606)
+..++.+.+.+. ...++...|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .+.. ...+.++.+|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 355666666543 556777778875 7999998876 666544 5555 4799999986 5555 57899999999999
Q ss_pred ecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEE
Q 007371 198 LARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE 277 (606)
Q Consensus 198 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 277 (606)
+..+.++.+|.......+|+.+.+..+ +..++...+.++++|+.+.+..+ +..... ..+.+ .+|+.+.
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--------~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--------EAFRE-SGITTVK 254 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECT--------TTTTT-CCCSEEE
T ss_pred cCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccc--------ccccc-CCccEEE
Confidence 999999999887777899999999863 67777777899999999999875 222222 34445 6899999
Q ss_pred EeeCCCCCCCccccc--cCCcEEEEEeCCCC----CCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhcccccee
Q 007371 278 IEVADAEILPPNFVS--VELQRYRIRIGDES----EDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLW 351 (606)
Q Consensus 278 l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~ 351 (606)
+ .+.+..++..... .+|+.+.+...... ..-....+..|++|+.+.+..+ ...+ +......+++|+.+.
T Consensus 255 l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I--~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 255 L-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRIL--GQGLLGGNRKVTQLT 329 (401)
T ss_dssp E-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEE--CTTTTTTCCSCCEEE
T ss_pred e-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEE--hhhhhcCCCCccEEE
Confidence 9 4667777665433 89999998433221 0123356788999999998852 1222 222333357899999
Q ss_pred cccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371 352 LETLEGVQSVVHELDDGEGFPRLKHLHVKSCS 383 (606)
Q Consensus 352 l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~ 383 (606)
+..+ ++.+...- ..++ +|+.+.+.++.
T Consensus 330 lp~~--l~~I~~~a--F~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 330 IPAN--VTQINFSA--FNNT-GIKEVKVEGTT 356 (401)
T ss_dssp ECTT--CCEECTTS--SSSS-CCCEEEECCSS
T ss_pred ECcc--ccEEcHHh--CCCC-CCCEEEEcCCC
Confidence 8653 55554321 3477 99999999874
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.73 E-value=1.2e-09 Score=110.26 Aligned_cols=87 Identities=17% Similarity=0.085 Sum_probs=50.8
Q ss_pred CCCCcEEEeeCCCCCC------CcccCCCCCCCEeeecCCcCC-----cccccccCCCCCCEEecCCCcccc----cccH
Q 007371 168 LINLQTLCLDYCRLKD------IAIVGQLKKLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLE----VIAP 232 (606)
Q Consensus 168 l~~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~----~~p~ 232 (606)
..+|++|++++|.++. ...+..+++|++|++++|.+. .++..+...++|++|++++|.... .++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4456666666665543 123345566666666666655 234555666677777777765432 2233
Q ss_pred HHhhCCCCCCEEEccCCCCCCcc
Q 007371 233 NVISKLSQLEELYMGNSFSGWEK 255 (606)
Q Consensus 233 ~~i~~l~~L~~L~l~~~~~~~~~ 255 (606)
. +...++|++|++++|.+....
T Consensus 234 ~-L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 234 A-AREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp H-HHHCSSCCEEECTTSSCCHHH
T ss_pred H-HHhCCCCCEEeccCCCCCHHH
Confidence 3 456677888888888765443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=2.7e-08 Score=99.81 Aligned_cols=90 Identities=23% Similarity=0.178 Sum_probs=43.7
Q ss_pred cccccchhHhcCCCCCcEEEeeC-CcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCcccc
Q 007371 133 GSMQVSDHFFKGTEGLKVLNFTR-IHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPL 208 (606)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~ 208 (606)
.+..+|. +..+.+|++|+|++ |.++.+| ..|+++.+|++|+|++|.++. +..|.++.+|++|+|++|.++.+|.
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 4444444 34455555555553 5555533 344555555555555555544 2344555555555555555555544
Q ss_pred cccCCCCCCEEecCCC
Q 007371 209 EIGQLTRLQLLDLSNC 224 (606)
Q Consensus 209 ~i~~L~~L~~L~l~~~ 224 (606)
.+....+|+.|++.+|
T Consensus 98 ~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGN 113 (347)
T ss_dssp TTTCSCCCCEEECCSS
T ss_pred HHcccCCceEEEeeCC
Confidence 3333223555555444
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=6.1e-08 Score=97.14 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=86.7
Q ss_pred EEEecCC-CCcccCCcccccccceeeccc-ccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCC
Q 007371 104 AISLTYG-GIQVLPERLQCPCLELLHTEG-DGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCR 180 (606)
Q Consensus 104 ~L~l~~~-~~~~l~~~~~l~~L~~L~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~ 180 (606)
.++.+++ .+..+|....+++|+.|++++ |.+..++...|..+++|++|+|++|.++.+ |..|+++++|++|+|++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4677887 888999933889999999996 999999988889999999999999999995 5578999999999999999
Q ss_pred CCC-CcccCCCCCCCEeeecCCcCCc
Q 007371 181 LKD-IAIVGQLKKLEILILARSTIKQ 205 (606)
Q Consensus 181 ~~~-~~~i~~l~~L~~L~l~~~~l~~ 205 (606)
++. |..+....+|++|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccC
Confidence 998 5444333349999999998763
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.54 E-value=1.8e-06 Score=88.03 Aligned_cols=122 Identities=13% Similarity=0.237 Sum_probs=52.0
Q ss_pred cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEe
Q 007371 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEIL 196 (606)
Q Consensus 120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L 196 (606)
+|.+|+.+.+..+ ...+....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ +.. ...+..+..+...
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 4455555555432 44455555555666666655432 33322 23444555554433322 111 1222222222111
Q ss_pred eecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371 197 ILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248 (606)
Q Consensus 197 ~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~ 248 (606)
... .+..+ ...+.++.+|+.+.+.++ ...++...+..+.+|+.+.+..
T Consensus 146 ~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 146 IPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 111 11111 123445566666665542 2334444455556666555543
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=7.2e-08 Score=84.54 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=67.1
Q ss_pred CCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCC-CCCCccceEeecccccccccc
Q 007371 449 NNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIG-PLFPKLFKLRLTDLPKLKRFC 527 (606)
Q Consensus 449 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~L~~l~ 527 (606)
.+|+.|++++|. +++. ....+.++++|++|++++|..+++........ . ...++|++|+|++|+++++-.
T Consensus 61 ~~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~-------~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ-------LENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT-------CHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh-------cccccCCCCEEEcCCCCcCCHHH
Confidence 468999999986 7776 33335788999999999998887643221110 0 013579999999999888754
Q ss_pred ccccccccCCCcceEeeccCCCCccc
Q 007371 528 NFTRNIIELPKLRYLTIENCPDMETF 553 (606)
Q Consensus 528 ~~~~~~~~~~~L~~L~i~~Cp~L~~l 553 (606)
. ..+..+++|+.|++++||+++..
T Consensus 132 l--~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 132 I--IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp H--HHGGGCTTCCEEEEESCTTCCCH
T ss_pred H--HHHhcCCCCCEEECCCCCCCCch
Confidence 4 33556899999999999988763
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=3.1e-07 Score=91.70 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=109.6
Q ss_pred CCCeEEEecCCCCc--c-------cCCcc-cccccceeecccccc----------cccchhHhcCCCCCcEEEeeCCcCc
Q 007371 100 KDPIAISLTYGGIQ--V-------LPERL-QCPCLELLHTEGDGS----------MQVSDHFFKGTEGLKVLNFTRIHFS 159 (606)
Q Consensus 100 ~~l~~L~l~~~~~~--~-------l~~~~-~l~~L~~L~~~~~~~----------~~~~~~~~~~l~~L~~L~l~~~~l~ 159 (606)
..++.|.+....+. . +.+.. .+++|+.|.+..... ..+ ..++..+++|+.|+++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCc
Confidence 45777877755432 1 11212 567888887654321 112 244577889999999887422
Q ss_pred cCCccccCCCCCcEEEeeCCCCCC--CcccC--CCCCCCEeeecCC--c------CCcccccc--cCCCCCCEEecCCCc
Q 007371 160 SLPSSLGCLINLQTLCLDYCRLKD--IAIVG--QLKKLEILILARS--T------IKQLPLEI--GQLTRLQLLDLSNCW 225 (606)
Q Consensus 160 ~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~--~l~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~ 225 (606)
.++. + .+.+|+.|++..|.+.. ...+. .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 3444 3 37889999998888765 34443 7889999988632 1 22222222 357889999998876
Q ss_pred ccccccHHHh--hCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 226 LLEVIAPNVI--SKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 226 ~~~~~p~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
.....+..+. +.+++|++|+++.|.+..... .+....+.++++|+.|+++.|.+.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA----RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHH----HHHHhhcccCCcceEEECCCCcCC
Confidence 5443333311 357789999998876654321 122234567788888888877654
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.34 E-value=2.1e-05 Score=80.00 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=96.0
Q ss_pred CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEe
Q 007371 100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCL 176 (606)
Q Consensus 100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l 176 (606)
..++.+.+.. .+..+.... +|++|+.+.+.++ ...++...|.++..|+.+.+..+ +..+ ...|.++..+.....
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 5678888864 477776654 7899999998755 66778888899999988766544 3332 234555544443332
Q ss_pred eCCCCCCCcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCC
Q 007371 177 DYCRLKDIAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS 249 (606)
Q Consensus 177 ~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 249 (606)
..........+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ ...++...+.++..|+.+.+..+
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC
Confidence 2222112467888999999998764 444543 4667889999888763 45565555778888888776554
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=3.5e-07 Score=80.17 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=66.5
Q ss_pred cceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhh----cCCCcEEEEecCCCcceeeccccccc
Q 007371 424 IHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRC----LNNLVYLEVRNCDSLEEVLHLEELIN 499 (606)
Q Consensus 424 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~----l~~L~~L~i~~c~~l~~l~~~~~~~~ 499 (606)
++|++++|. +..... .....+++|++|++++|..+++- ....+.. .++|++|+|++|+++++-...
T Consensus 64 ~~LDLs~~~-Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~----- 133 (176)
T 3e4g_A 64 QAIDATDSC-IMSIGF---DHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII----- 133 (176)
T ss_dssp EEEEEESCC-CCGGGG---GGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-----
T ss_pred eEEeCcCCC-ccHHHH---HHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-----
Confidence 339999997 544322 23467899999999999999986 2222333 357999999999999874432
Q ss_pred cccCCCCCCCCccceEeecccccccccc
Q 007371 500 ADKEHIGPLFPKLFKLRLTDLPKLKRFC 527 (606)
Q Consensus 500 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 527 (606)
.+..+++|++|+|++|+++++..
T Consensus 134 -----~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 134 -----ALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -----HGGGCTTCCEEEEESCTTCCCHH
T ss_pred -----HHhcCCCCCEEECCCCCCCCchH
Confidence 23468999999999999998753
No 152
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.09 E-value=5.4e-07 Score=95.96 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=62.6
Q ss_pred hhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCC-ccccccCCCCChHhHHHHhhhhhcC
Q 007371 5 GLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMS-CQKNFPIDALPRKEALQLFEKRMFN 83 (606)
Q Consensus 5 ~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~ 83 (606)
.+..+.||||+..++ .+. ..+||+||||||+..| +..++ ...+|++++|+.++||+||.++++.
T Consensus 244 r~LlVLDdv~~~~~~-~~~-------------~~~gs~ilvTTR~~~v-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 308 (549)
T 2a5y_B 244 NTLFVFDDVVQEETI-RWA-------------QELRLRCLVTTRDVEI-SNAASQTCEFIEVTSLEIDECYDFLEAYGMP 308 (549)
T ss_dssp TEEEEEEEECCHHHH-HHH-------------HHTTCEEEEEESBGGG-GGGCCSCEEEEECCCCCHHHHHHHHHHTSCC
T ss_pred cEEEEEECCCCchhh-ccc-------------ccCCCEEEEEcCCHHH-HHHcCCCCeEEECCCCCHHHHHHHHHHHhcC
Confidence 566788999997655 221 2269999999999999 56665 4467999999999999999999987
Q ss_pred CCChhhHHHHHhhhcc
Q 007371 84 IPNVADLEKKMEETIR 99 (606)
Q Consensus 84 ~~~~~~l~~~~~di~~ 99 (606)
.+...+++.++.+|++
T Consensus 309 ~~~~~~~~~~~~~I~~ 324 (549)
T 2a5y_B 309 MPVGEKEEDVLNKTIE 324 (549)
T ss_dssp CC--CHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHH
Confidence 7654577778888876
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=2.5e-06 Score=76.60 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=62.5
Q ss_pred hcCCCCCcEEEeeCC-cCcc-----CCccccCCCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcCC-----
Q 007371 142 FKGTEGLKVLNFTRI-HFSS-----LPSSLGCLINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTIK----- 204 (606)
Q Consensus 142 ~~~l~~L~~L~l~~~-~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~----- 204 (606)
+...+.|++|++++| .+.. +...+...++|++|++++|.+.+ . ..+...++|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456777777777777 6643 34445556677777777777654 1 33444566777777777665
Q ss_pred cccccccCCCCCCEEec--CCCccccc----ccHHHhhCCCCCCEEEccCCCC
Q 007371 205 QLPLEIGQLTRLQLLDL--SNCWLLEV----IAPNVISKLSQLEELYMGNSFS 251 (606)
Q Consensus 205 ~lp~~i~~L~~L~~L~l--~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~ 251 (606)
.+...+...++|++|++ ++|..... +... +...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence 24445555666666666 44432221 2222 34445566666655543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=1.1e-05 Score=80.44 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=111.0
Q ss_pred CCCeEEEecCCCCc----------ccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCcccc-
Q 007371 100 KDPIAISLTYGGIQ----------VLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLG- 166 (606)
Q Consensus 100 ~~l~~L~l~~~~~~----------~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~- 166 (606)
++++.|.+...... .+.... .+++|+.|.+.++....++. +. .++|+.|++..+.+.. ....+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHH
Confidence 78999998664331 122222 67899999998774334544 23 8899999999988764 223333
Q ss_pred -CCCCCcEEEeeCC--C-CCC-----C-ccc--CCCCCCCEeeecCCcCCc-ccccc---cCCCCCCEEecCCCccccc-
Q 007371 167 -CLINLQTLCLDYC--R-LKD-----I-AIV--GQLKKLEILILARSTIKQ-LPLEI---GQLTRLQLLDLSNCWLLEV- 229 (606)
Q Consensus 167 -~l~~L~~L~l~~~--~-~~~-----~-~~i--~~l~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~l~~~~~~~~- 229 (606)
.+++|++|+|+.+ . ... . ..+ ..+++|++|++.+|.+.. .+..+ ..+++|++|+++.|.....
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 7899999998642 1 111 1 122 358999999999997762 22222 3588999999998764432
Q ss_pred ---ccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhcc-CCCCCEEEEeeCC
Q 007371 230 ---IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELER-LTKLATLEIEVAD 282 (606)
Q Consensus 230 ---~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 282 (606)
++.. +..+++|+.|++++|.+..... ..+.. + ..+++++.++
T Consensus 296 ~~~L~~~-L~~l~~L~~L~L~~n~i~d~~~--------~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 296 ARLLLDH-VDKIKHLKFINMKYNYLSDEMK--------KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHTT-HHHHTTCSEEECCSBBCCHHHH--------HHHHHHC--CSEEECCSBC
T ss_pred HHHHHhh-cccCCcceEEECCCCcCCHHHH--------HHHHHHc--CCEEEecCCc
Confidence 3333 4678999999999997654332 34443 2 4567777665
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.93 E-value=0.00047 Score=69.93 Aligned_cols=119 Identities=8% Similarity=0.140 Sum_probs=56.0
Q ss_pred cceeecccccccccchhHhcCCCCCcEEEeeCCc---CccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEee
Q 007371 124 LELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIH---FSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILI 197 (606)
Q Consensus 124 L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~ 197 (606)
|+++.+... ...+....|.++.+|+.+.+..+. ++.+. ..|.++.+|+.+.+..+ +.. ...+..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 444444322 344555555666666666665442 33332 23455555555444332 222 24455566666666
Q ss_pred ecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371 198 LARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248 (606)
Q Consensus 198 l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~ 248 (606)
+... +..++ ..+..+.+|+.+.+.++ ...+....+. ..+|+.+.+..
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECT
T ss_pred ccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECC
Confidence 6432 33332 23445666666666542 3333333232 24566665544
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.87 E-value=0.0032 Score=63.72 Aligned_cols=112 Identities=11% Similarity=0.143 Sum_probs=70.2
Q ss_pred ccccchhHhcCCC-CCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCC---CCC--CcccCCCCCCCEeeecCCcCCcc
Q 007371 134 SMQVSDHFFKGTE-GLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCR---LKD--IAIVGQLKKLEILILARSTIKQL 206 (606)
Q Consensus 134 ~~~~~~~~~~~l~-~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~---~~~--~~~i~~l~~L~~L~l~~~~l~~l 206 (606)
...+.+..|.+++ .|+.+.+..+ ++.+. ..|.++.+|+.+.+..+. ++. ...+..+.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4456667777774 5888888653 55543 467788888888887653 333 356667777777666543 4444
Q ss_pred cc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCC
Q 007371 207 PL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS 249 (606)
Q Consensus 207 p~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 249 (606)
+. .+..+.+|+.+.+.. ....++...+..+.+|+.+.+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence 43 356677777777764 234445444667777777776543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=5.8e-06 Score=74.23 Aligned_cols=119 Identities=12% Similarity=0.067 Sum_probs=86.0
Q ss_pred CCccccCCCCCcEEEeeCC-CCCC------CcccCCCCCCCEeeecCCcCC-----cccccccCCCCCCEEecCCCcccc
Q 007371 161 LPSSLGCLINLQTLCLDYC-RLKD------IAIVGQLKKLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLE 228 (606)
Q Consensus 161 lp~~~~~l~~L~~L~l~~~-~~~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~ 228 (606)
+...+...++|++|++++| .+.. ...+...++|++|++++|.+. .+...+...++|++|++++|....
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445677889999999999 7775 255667789999999999887 345566677889999999876433
Q ss_pred c----ccHHHhhCCCCCCEEEc--cCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371 229 V----IAPNVISKLSQLEELYM--GNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE 284 (606)
Q Consensus 229 ~----~p~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 284 (606)
. +... +...++|++|++ ++|.+..... ......+...+.|++|++++|.+.
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~----~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE----MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH----HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH----HHHHHHHHhCCCcCEEeccCCCCC
Confidence 2 3334 677788999999 7777654321 123456677788999999887753
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=7.9e-06 Score=77.24 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=27.3
Q ss_pred CCCCCCEeeecCCcCCcccccccCCC--CCCEEecCCCccccccc------HHHhhCCCCCCEEE
Q 007371 189 QLKKLEILILARSTIKQLPLEIGQLT--RLQLLDLSNCWLLEVIA------PNVISKLSQLEELY 245 (606)
Q Consensus 189 ~l~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~~p------~~~i~~l~~L~~L~ 245 (606)
.+++|++|+|++|.++.+ ..+..+. +|++|++.+|...+.+| ..++..+++|+.|+
T Consensus 194 ~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 444444444444444433 1122222 55555555555444333 12356677777775
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=5.6e-05 Score=71.39 Aligned_cols=78 Identities=26% Similarity=0.235 Sum_probs=40.6
Q ss_pred cCCCCCcEEEeeCCcCccC---CccccCCCCCcEEEeeCCCCCCCcccCCCC--CCCEeeecCCcCC-ccc-------cc
Q 007371 143 KGTEGLKVLNFTRIHFSSL---PSSLGCLINLQTLCLDYCRLKDIAIVGQLK--KLEILILARSTIK-QLP-------LE 209 (606)
Q Consensus 143 ~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~i~~l~--~L~~L~l~~~~l~-~lp-------~~ 209 (606)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.+++...+..+. +|++|++++|.+. .+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3455666666666655542 234455666666666666655532333333 5666666666554 232 12
Q ss_pred ccCCCCCCEEe
Q 007371 210 IGQLTRLQLLD 220 (606)
Q Consensus 210 i~~L~~L~~L~ 220 (606)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555666554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.20 E-value=0.042 Score=54.99 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=35.3
Q ss_pred ccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEee
Q 007371 445 VSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRL 517 (606)
Q Consensus 445 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 517 (606)
+..+++|+.+.+.+ ..++.+ +...+.++++|+.+.+.+ +++.+.. .....+++|+++.+
T Consensus 282 F~~c~~L~~i~l~~-~~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~~----------~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDN-SAIETL-EPRVFMDCVKLSSVTLPT--ALKTIQV----------YAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECC-TTCCEE-CTTTTTTCTTCCEEECCT--TCCEECT----------TTTTTCTTCCCCCC
T ss_pred cccccccccccccc-ccccee-hhhhhcCCCCCCEEEcCc--cccEEHH----------HHhhCCCCCCEEEE
Confidence 45567788888765 356666 334456778888877742 3555432 23445566666665
No 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.75 E-value=0.00013 Score=80.65 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=49.7
Q ss_pred hhhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccCC------CCChHhHHHHh
Q 007371 4 VGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPID------ALPRKEALQLF 77 (606)
Q Consensus 4 ~~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l~------~L~~~~~~~Lf 77 (606)
..+..+.||||+...|+.+. .||+||||||+..+ +..+.....|+++ .|+.+|||+||
T Consensus 244 KRvLLVLDDVwd~eqLe~f~---------------pGSRILVTTRd~~V-a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF 307 (1221)
T 1vt4_I 244 ENCLLVLLNVQNAKAWNAFN---------------LSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLL 307 (1221)
T ss_dssp SSCEEEEESCCCHHHHHHHH---------------SSCCEEEECSCSHH-HHHHHHHSSCEEEECSSSSCCCHHHHHHHH
T ss_pred CCEEEEEeCcChHHHHHhhC---------------CCeEEEEeccChHH-HHhcCCCeEEEecCccccCCcCHHHHHHHH
Confidence 34566889999988887542 38999999999999 4444444467777 89999999999
Q ss_pred hhhhcC
Q 007371 78 EKRMFN 83 (606)
Q Consensus 78 ~~~~~~ 83 (606)
.+.++.
T Consensus 308 ~~~~g~ 313 (1221)
T 1vt4_I 308 LKYLDC 313 (1221)
T ss_dssp HHHHCC
T ss_pred HHHcCC
Confidence 998543
No 162
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.70 E-value=0.00038 Score=81.93 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=52.9
Q ss_pred hhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccCCC-CChHhHHHHhhhhhcC
Q 007371 5 GLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDA-LPRKEALQLFEKRMFN 83 (606)
Q Consensus 5 ~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~ 83 (606)
.+..+.||||+..+|+.+ ++||+||||||+..|+...++....+++.. |+++++|+||...++.
T Consensus 237 ~~LlvlDd~~~~~~~~~~---------------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 237 RSLLILDDVWDPWVLKAF---------------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp SCEEEEESCCCHHHHTTT---------------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred CEEEEEecCCCHHHHHhh---------------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC
Confidence 567788999998776654 348999999999999434567778899985 9999999999998764
Q ss_pred C
Q 007371 84 I 84 (606)
Q Consensus 84 ~ 84 (606)
.
T Consensus 302 ~ 302 (1249)
T 3sfz_A 302 K 302 (1249)
T ss_dssp C
T ss_pred C
Confidence 3
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.11 E-value=0.13 Score=51.39 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=69.2
Q ss_pred HhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCC
Q 007371 141 FFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRL 216 (606)
Q Consensus 141 ~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L 216 (606)
.+.....|+.+.+..+ +.. -...+.++.+|+.+.+..+ ++. ...+.++.+|+.+.+.. .++.++. .+..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence 3455666666666543 222 2234556666776666554 333 35556666677766644 3444443 34566777
Q ss_pred CEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371 217 QLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE 279 (606)
Q Consensus 217 ~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 279 (606)
+.+.+.++ .+..++...+.++.+|+.+.+..+ +..... ..+.++++|+++.+.
T Consensus 289 ~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--------~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQV--------YAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT--------TTTTTCTTCCCCCCC
T ss_pred cccccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHH--------HHhhCCCCCCEEEEC
Confidence 77776653 244555554667777777776543 222221 455666667666553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.31 E-value=0.03 Score=49.80 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=43.4
Q ss_pred cCCCCCcEEEeeCC-cCcc-----CCccccCCCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcCC-----c
Q 007371 143 KGTEGLKVLNFTRI-HFSS-----LPSSLGCLINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTIK-----Q 205 (606)
Q Consensus 143 ~~l~~L~~L~l~~~-~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~-----~ 205 (606)
.+-+.|+.|+|+++ .+.. +-..+..-..|+.|+|++|.+.+ - ..+..=+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44566677777664 5532 33344444566666666666654 1 23334455666666666655 2
Q ss_pred ccccccCCCCCCEEecCC
Q 007371 206 LPLEIGQLTRLQLLDLSN 223 (606)
Q Consensus 206 lp~~i~~L~~L~~L~l~~ 223 (606)
+-..+..-+.|++|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 233344444556665554
No 165
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.99 E-value=0.022 Score=60.90 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=45.2
Q ss_pred hhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccC---CCCChHhHHHHhhhhh
Q 007371 5 GLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPI---DALPRKEALQLFEKRM 81 (606)
Q Consensus 5 ~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~ 81 (606)
.+..+.||||+...++. ...|++||||||+..++ ..+. ...+++ ++|+.+++++||...+
T Consensus 237 ~~LLVLDdv~~~~~l~~---------------l~~~~~ilvTsR~~~~~-~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~ 299 (591)
T 1z6t_A 237 RSLLILDDVWDSWVLKA---------------FDSQCQILLTTRDKSVT-DSVM-GPKYVVPVESSLGKEKGLEILSLFV 299 (591)
T ss_dssp TCEEEEEEECCHHHHHT---------------TCSSCEEEEEESCGGGG-TTCC-SCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCHHHHHH---------------hcCCCeEEEECCCcHHH-HhcC-CCceEeecCCCCCHHHHHHHHHHHh
Confidence 35678899998655442 23489999999999984 4432 223333 5899999999999988
Q ss_pred cC
Q 007371 82 FN 83 (606)
Q Consensus 82 ~~ 83 (606)
+.
T Consensus 300 ~~ 301 (591)
T 1z6t_A 300 NM 301 (591)
T ss_dssp TS
T ss_pred CC
Confidence 75
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.95 E-value=0.087 Score=43.45 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=12.3
Q ss_pred CcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371 171 LQTLCLDYCRLKD--IAIVGQLKKLEILILARS 201 (606)
Q Consensus 171 L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~ 201 (606)
|++|+|++|.++. +..+..+.+|++|+|.+|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444333 123333444444444443
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.93 E-value=0.14 Score=42.22 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=34.5
Q ss_pred eeeccccccc--ccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCC
Q 007371 126 LLHTEGDGSM--QVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRL 181 (606)
Q Consensus 126 ~L~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 181 (606)
.++.+++.+. .+|..+ ..+|++|+|++|.|+.+|. .|..+.+|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4445555555 666543 3457777777777777655 456677778888777754
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.85 E-value=0.078 Score=47.08 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=61.8
Q ss_pred ccCCCCCcEEEeeCC-CCCC------CcccCCCCCCCEeeecCCcCC-----cccccccCCCCCCEEecCCCccccc---
Q 007371 165 LGCLINLQTLCLDYC-RLKD------IAIVGQLKKLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLEV--- 229 (606)
Q Consensus 165 ~~~l~~L~~L~l~~~-~~~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~--- 229 (606)
+.+-..|+.|+++++ .+.+ -..+..-..|+.|+|++|.+. .+-..+..-+.|++|+++.|.....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566788888775 5654 144555567777777777765 3344455556677777777543221
Q ss_pred -ccHHHhhCCCCCCEEEccCCCC---CCccccCCCccchHhhccCCCCCEEEEeeCC
Q 007371 230 -IAPNVISKLSQLEELYMGNSFS---GWEKVEGGSNASLVELERLTKLATLEIEVAD 282 (606)
Q Consensus 230 -~p~~~i~~l~~L~~L~l~~~~~---~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 282 (606)
+... +..=+.|++|+++++.. .... ..+....+..-+.|++|+++++.
T Consensus 117 ala~a-L~~N~tL~~L~L~n~~~~~ig~~g----~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRS-TLVTQSIVEFKADNQRQSVLGNQV----EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHH-TTTTCCCSEEECCCCSSCCCCHHH----HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHH-HhhCCceeEEECCCCcCcCcCHHH----HHHHHHHHHhCCCcCeEeccCCC
Confidence 2222 34445577777765422 1100 11233455555666666665443
Done!