Query 007372
Match_columns 606
No_of_seqs 277 out of 2849
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 22:41:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 7.9E-34 1.7E-38 260.8 13.4 253 298-562 203-461 (483)
2 KOG4341 F-box protein containi 100.0 1.6E-28 3.5E-33 226.0 10.0 327 234-587 127-458 (483)
3 PLN00113 leucine-rich repeat r 99.9 2.6E-27 5.7E-32 266.7 18.1 471 42-567 69-561 (968)
4 PLN00113 leucine-rich repeat r 99.9 1E-26 2.2E-31 261.9 15.9 465 40-568 116-586 (968)
5 KOG2120 SCF ubiquitin ligase, 99.9 8.3E-22 1.8E-26 173.8 12.8 287 2-341 99-391 (419)
6 KOG4194 Membrane glycoprotein 99.8 7.8E-23 1.7E-27 196.1 -1.5 327 176-568 102-431 (873)
7 KOG4194 Membrane glycoprotein 99.8 3.1E-21 6.6E-26 185.3 -0.2 356 170-595 72-431 (873)
8 cd00116 LRR_RI Leucine-rich re 99.8 1.9E-17 4.1E-22 162.7 21.3 221 362-591 80-318 (319)
9 cd00116 LRR_RI Leucine-rich re 99.8 4.7E-17 1E-21 159.9 23.6 192 363-564 108-318 (319)
10 KOG2120 SCF ubiquitin ligase, 99.7 5.9E-17 1.3E-21 143.4 11.6 261 312-595 137-401 (419)
11 KOG0444 Cytoskeletal regulator 99.6 5.4E-18 1.2E-22 164.5 -4.3 369 39-481 4-375 (1255)
12 PLN03210 Resistant to P. syrin 99.6 5.6E-15 1.2E-19 167.0 13.2 345 140-564 552-904 (1153)
13 KOG0618 Serine/threonine phosp 99.6 3.4E-17 7.4E-22 166.3 -4.5 222 311-564 241-487 (1081)
14 KOG0618 Serine/threonine phosp 99.6 2.5E-16 5.4E-21 160.1 -1.0 154 387-564 358-511 (1081)
15 KOG0444 Cytoskeletal regulator 99.6 4.3E-17 9.3E-22 158.4 -7.0 154 386-564 220-373 (1255)
16 KOG1909 Ran GTPase-activating 99.5 9.9E-14 2.2E-18 126.3 12.9 252 305-566 24-311 (382)
17 KOG1909 Ran GTPase-activating 99.5 3.6E-13 7.8E-18 122.7 12.6 258 272-548 25-321 (382)
18 PLN03210 Resistant to P. syrin 99.5 2.2E-13 4.7E-18 154.3 11.1 287 218-565 588-881 (1153)
19 KOG1947 Leucine rich repeat pr 99.4 7.5E-13 1.6E-17 138.3 12.6 273 229-548 173-449 (482)
20 KOG1947 Leucine rich repeat pr 99.4 6.6E-13 1.4E-17 138.7 11.4 258 298-568 175-442 (482)
21 KOG0472 Leucine-rich repeat pr 99.3 6.3E-15 1.4E-19 136.1 -10.1 199 42-288 68-286 (565)
22 PRK15387 E3 ubiquitin-protein 99.2 5.5E-11 1.2E-15 125.2 8.3 171 219-449 222-393 (788)
23 KOG3207 Beta-tubulin folding c 99.2 9.9E-12 2.1E-16 116.7 2.1 65 309-374 119-183 (505)
24 KOG3207 Beta-tubulin folding c 99.1 2.6E-11 5.5E-16 114.0 1.3 214 275-505 119-337 (505)
25 KOG0472 Leucine-rich repeat pr 99.1 7.1E-12 1.5E-16 116.2 -2.7 195 42-288 114-308 (565)
26 PRK15387 E3 ubiquitin-protein 99.0 4.2E-10 9.2E-15 118.6 7.2 243 176-516 222-466 (788)
27 KOG4237 Extracellular matrix p 98.8 5.1E-10 1.1E-14 104.0 0.3 271 300-595 55-361 (498)
28 PF12937 F-box-like: F-box-lik 98.8 3.1E-09 6.7E-14 69.9 3.3 35 1-36 1-35 (47)
29 COG5238 RNA1 Ran GTPase-activa 98.8 3.4E-08 7.4E-13 87.4 8.8 154 411-568 155-318 (388)
30 KOG3665 ZYG-1-like serine/thre 98.8 4.9E-08 1.1E-12 102.8 11.4 108 337-449 122-231 (699)
31 KOG3665 ZYG-1-like serine/thre 98.7 3.3E-08 7.1E-13 104.1 9.8 160 362-536 121-285 (699)
32 COG5238 RNA1 Ran GTPase-activa 98.7 1.4E-07 3E-12 83.6 11.5 203 383-594 87-317 (388)
33 PRK15370 E3 ubiquitin-protein 98.7 7.9E-08 1.7E-12 102.3 10.5 96 218-347 198-293 (754)
34 PRK15370 E3 ubiquitin-protein 98.6 2.4E-08 5.3E-13 106.2 5.1 251 244-568 178-430 (754)
35 KOG1259 Nischarin, modulator o 98.6 9.3E-09 2E-13 92.2 1.4 135 408-568 279-414 (490)
36 KOG4237 Extracellular matrix p 98.6 7.3E-09 1.6E-13 96.5 -1.5 101 465-578 271-372 (498)
37 PF14580 LRR_9: Leucine-rich r 98.5 5.7E-08 1.2E-12 83.5 2.3 79 364-449 20-99 (175)
38 KOG2982 Uncharacterized conser 98.5 1.6E-07 3.4E-12 84.4 4.7 62 313-374 47-108 (418)
39 PF14580 LRR_9: Leucine-rich r 98.4 2.6E-08 5.6E-13 85.6 -1.5 13 493-505 87-99 (175)
40 KOG3864 Uncharacterized conser 98.3 7.7E-07 1.7E-11 75.7 4.0 87 440-539 103-189 (221)
41 KOG2982 Uncharacterized conser 98.3 1E-06 2.2E-11 79.3 4.6 188 218-428 70-264 (418)
42 PF00646 F-box: F-box domain; 98.2 3.7E-07 8.1E-12 60.5 1.4 34 2-36 4-37 (48)
43 KOG1259 Nischarin, modulator o 98.2 2.2E-07 4.8E-12 83.5 0.3 199 362-595 213-414 (490)
44 smart00256 FBOX A Receptor for 98.2 1E-06 2.2E-11 56.2 3.1 32 4-36 1-32 (41)
45 KOG3864 Uncharacterized conser 98.2 1.1E-06 2.4E-11 74.7 4.0 85 415-505 103-187 (221)
46 KOG4308 LRR-containing protein 98.1 7.2E-07 1.6E-11 90.0 1.4 346 221-595 89-475 (478)
47 KOG4308 LRR-containing protein 98.1 3.5E-07 7.5E-12 92.3 -2.0 219 365-592 89-330 (478)
48 PF13855 LRR_8: Leucine rich r 97.8 6.5E-06 1.4E-10 57.7 0.5 60 363-424 1-60 (61)
49 KOG4658 Apoptotic ATPase [Sign 97.6 2.7E-05 5.8E-10 84.8 2.9 231 218-483 544-785 (889)
50 KOG0617 Ras suppressor protein 97.6 1.2E-06 2.6E-11 72.2 -6.1 153 43-232 34-186 (264)
51 KOG1859 Leucine-rich repeat pr 97.5 1.4E-05 3.1E-10 80.9 -1.7 237 329-600 76-329 (1096)
52 KOG4658 Apoptotic ATPase [Sign 97.5 3.4E-05 7.3E-10 84.1 0.7 236 243-509 544-785 (889)
53 PF13855 LRR_8: Leucine rich r 97.4 2.6E-05 5.6E-10 54.7 -0.9 60 388-449 1-60 (61)
54 KOG0617 Ras suppressor protein 97.4 7.3E-06 1.6E-10 67.7 -4.2 81 66-156 32-112 (264)
55 KOG2123 Uncharacterized conser 97.3 3.5E-05 7.6E-10 69.0 -0.7 83 388-481 19-101 (388)
56 KOG1859 Leucine-rich repeat pr 97.3 4.4E-05 9.5E-10 77.6 -0.3 54 59-112 76-131 (1096)
57 PLN03150 hypothetical protein; 97.2 0.00074 1.6E-08 72.0 6.6 108 390-506 420-527 (623)
58 PLN03150 hypothetical protein; 97.1 0.00077 1.7E-08 71.8 6.4 108 415-538 420-527 (623)
59 KOG2123 Uncharacterized conser 97.0 0.00015 3.3E-09 65.1 -0.1 104 362-474 18-123 (388)
60 PRK15386 type III secretion pr 96.7 0.0029 6.3E-08 61.9 5.7 57 309-375 50-106 (426)
61 PF12799 LRR_4: Leucine Rich r 96.6 0.0032 7E-08 40.2 3.9 36 389-426 2-37 (44)
62 smart00367 LRR_CC Leucine-rich 96.6 0.0027 5.9E-08 35.2 2.7 22 494-515 2-23 (26)
63 COG4886 Leucine-rich repeat (L 96.5 0.0021 4.6E-08 65.0 3.9 36 525-565 254-289 (394)
64 PF12799 LRR_4: Leucine Rich r 96.5 0.0024 5.1E-08 40.8 2.4 38 526-567 1-38 (44)
65 KOG1644 U2-associated snRNP A' 96.4 0.0016 3.4E-08 56.0 1.5 112 438-568 42-155 (233)
66 KOG2739 Leucine-rich acidic nu 96.4 0.00092 2E-08 60.0 0.1 65 384-449 61-127 (260)
67 PRK15386 type III secretion pr 96.3 0.004 8.6E-08 61.0 4.2 145 378-564 42-188 (426)
68 KOG2739 Leucine-rich acidic nu 96.3 0.00045 9.7E-09 61.9 -2.1 63 466-536 63-126 (260)
69 smart00367 LRR_CC Leucine-rich 96.2 0.0069 1.5E-07 33.6 3.0 23 468-490 2-24 (26)
70 KOG0531 Protein phosphatase 1, 96.1 0.00043 9.4E-09 70.2 -3.8 226 309-568 93-320 (414)
71 COG4886 Leucine-rich repeat (L 95.6 0.01 2.3E-07 60.0 3.7 173 66-288 115-288 (394)
72 KOG0281 Beta-TrCP (transducin 95.5 0.0048 1E-07 57.0 0.6 43 1-44 75-122 (499)
73 KOG0531 Protein phosphatase 1, 95.3 0.0022 4.7E-08 65.1 -2.4 175 361-568 93-270 (414)
74 KOG1644 U2-associated snRNP A' 95.1 0.0078 1.7E-07 51.9 0.9 108 467-590 41-150 (233)
75 KOG2997 F-box protein FBX9 [Ge 94.5 0.014 2.9E-07 53.8 0.8 35 1-36 107-146 (366)
76 KOG4579 Leucine-rich repeat (L 94.3 0.0077 1.7E-07 48.4 -1.1 63 384-449 49-111 (177)
77 KOG4579 Leucine-rich repeat (L 94.1 0.018 4E-07 46.4 0.7 84 468-566 53-136 (177)
78 PF13516 LRR_6: Leucine Rich r 93.5 0.058 1.3E-06 29.1 1.8 19 495-514 3-21 (24)
79 PLN03215 ascorbic acid mannose 93.0 0.072 1.6E-06 51.8 2.8 34 2-36 5-39 (373)
80 PF13516 LRR_6: Leucine Rich r 92.4 0.093 2E-06 28.3 1.6 12 416-427 5-16 (24)
81 KOG0532 Leucine-rich repeat (L 92.2 0.014 3.1E-07 58.3 -3.2 61 384-449 117-177 (722)
82 KOG0532 Leucine-rich repeat (L 90.7 0.032 7E-07 56.0 -2.4 37 219-257 211-247 (722)
83 smart00368 LRR_RI Leucine rich 90.6 0.44 9.6E-06 26.8 3.1 22 495-517 3-24 (28)
84 KOG3763 mRNA export factor TAP 88.9 0.73 1.6E-05 46.6 5.2 40 435-478 215-254 (585)
85 PF13013 F-box-like_2: F-box-l 88.6 0.44 9.5E-06 37.3 2.8 29 1-30 22-50 (109)
86 smart00368 LRR_RI Leucine rich 88.2 0.77 1.7E-05 25.8 2.9 22 413-434 2-23 (28)
87 PF13504 LRR_7: Leucine rich r 86.7 0.45 9.7E-06 23.1 1.2 12 554-565 2-13 (17)
88 KOG0274 Cdc4 and related F-box 82.3 0.53 1.2E-05 49.0 0.8 35 1-36 108-142 (537)
89 KOG3763 mRNA export factor TAP 82.2 2.3 5.1E-05 43.1 5.1 86 465-559 215-307 (585)
90 PF13306 LRR_5: Leucine rich r 74.6 0.99 2.1E-05 36.9 0.0 12 274-285 9-20 (129)
91 PF13306 LRR_5: Leucine rich r 73.5 0.81 1.7E-05 37.5 -0.8 12 409-420 54-65 (129)
92 PF00560 LRR_1: Leucine Rich R 68.2 3.3 7.1E-05 21.6 1.1 13 554-566 1-13 (22)
93 PF07723 LRR_2: Leucine Rich R 59.0 14 0.0003 20.3 2.6 26 554-581 1-26 (26)
94 KOG3735 Tropomodulin and leiom 56.8 22 0.00049 33.9 5.1 102 428-535 188-292 (353)
95 smart00369 LRR_TYP Leucine-ric 56.3 8.5 0.00018 20.9 1.5 15 553-567 2-16 (26)
96 smart00370 LRR Leucine-rich re 56.3 8.5 0.00018 20.9 1.5 15 553-567 2-16 (26)
97 KOG3735 Tropomodulin and leiom 42.9 45 0.00098 31.9 4.8 25 466-490 196-220 (353)
98 smart00365 LRR_SD22 Leucine-ri 41.9 17 0.00037 20.0 1.1 15 553-567 2-16 (26)
99 KOG3926 F-box proteins [Amino 32.6 13 0.00027 34.1 -0.4 46 2-48 203-250 (332)
100 smart00364 LRR_BAC Leucine-ric 31.6 24 0.00052 19.5 0.7 16 553-568 2-17 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=7.9e-34 Score=260.83 Aligned_cols=253 Identities=23% Similarity=0.405 Sum_probs=219.1
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
+++..++.+++.|++|++|++++|+.+++.++..+..++..++.+...+|.......+..+...++-+.++++..|..++
T Consensus 203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence 56666666777777777777777777777777777788888888877788888888888888888888889999998899
Q ss_pred HHHHHHhc-CCCCCcEEEccCCCCCChHHHHccc-CCCCCCEEEccCC-CCChHHHHHHHhcCCCccEEEccCCCCCCHH
Q 007372 378 SETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDK 454 (606)
Q Consensus 378 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 454 (606)
+..+..+. .+..|+.|+.++|..++|..+..+. ++++|+.+.+.+| .+++.+++.+.++++.|+.+++.+|..+++.
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 98888777 5899999999999889999888885 7899999999999 7999999999999999999999999988888
Q ss_pred HHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHH---cCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEE
Q 007372 455 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRL 531 (606)
Q Consensus 455 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L 531 (606)
.+..++ .+++.|+.+.++.|..+++.++..+.. +...|+.+.+++|+.+++..++.+.. |++||++
T Consensus 363 tL~sls----~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~-------c~~Leri 431 (483)
T KOG4341|consen 363 TLASLS----RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI-------CRNLERI 431 (483)
T ss_pred hHhhhc----cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh-------Cccccee
Confidence 788777 789999999999999999998888753 35789999999999999999999985 9999999
Q ss_pred eccCCCCCCHHHHHHhhcCCCCCceEEEeec
Q 007372 532 DLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQ 562 (606)
Q Consensus 532 ~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~ 562 (606)
++.+|..++..++..+. ..+|++++.-...
T Consensus 432 ~l~~~q~vtk~~i~~~~-~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 432 ELIDCQDVTKEAISRFA-THLPNIKVHAYFA 461 (483)
T ss_pred eeechhhhhhhhhHHHH-hhCccceehhhcc
Confidence 99999999999999987 6788887766543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=1.6e-28 Score=226.00 Aligned_cols=327 Identities=22% Similarity=0.318 Sum_probs=288.3
Q ss_pred HHHHHHHhhC-CCCCEEEcCCCCCCCcccccccChhHHhhcc-CCCCccEEEeccccccCCCCccccChHHHHHHHhcCC
Q 007372 234 ELLITITASL-PFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCK 311 (606)
Q Consensus 234 ~~l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 311 (606)
..++.+.+.| ..|+.|.+.+| ..+.+..+..+. .++++++|.+.+|. .+++..+..++..|+
T Consensus 127 ~VV~~~~~Rcgg~lk~LSlrG~--------r~v~~sslrt~~~~CpnIehL~l~gc~--------~iTd~s~~sla~~C~ 190 (483)
T KOG4341|consen 127 GVVENMISRCGGFLKELSLRGC--------RAVGDSSLRTFASNCPNIEHLALYGCK--------KITDSSLLSLARYCR 190 (483)
T ss_pred cceehHhhhhcccccccccccc--------ccCCcchhhHHhhhCCchhhhhhhcce--------eccHHHHHHHHHhcc
Confidence 3455555556 57999999999 455666666665 89999999999984 699999999999999
Q ss_pred CccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhc-CCCCC
Q 007372 312 GLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNL 390 (606)
Q Consensus 312 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L 390 (606)
+|+++++..|..+++..+..+..+||+|++++++.|+.+....+..+...+..++.+.+.+|.....+.+..+. .++-+
T Consensus 191 ~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i 270 (483)
T KOG4341|consen 191 KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI 270 (483)
T ss_pred hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877776 57888
Q ss_pred cEEEccCCCCCChHHHHccc-CCCCCCEEEccCC-CCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCC
Q 007372 391 EVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ 468 (606)
Q Consensus 391 ~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 468 (606)
.++++..|..++|.++..+. .+..|+.|..+++ ++++..+..+.+++++|+.|.+++|.++++.++..+. +.++
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~ 346 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCP 346 (483)
T ss_pred hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----cCCh
Confidence 88998899889999876664 6888999999998 8999999999999999999999999999999999988 8999
Q ss_pred CCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhh
Q 007372 469 SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK 548 (606)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 548 (606)
.|+.+++..|..+++..+..++.+||.|+++.+++|..++|+++..+...-- +...|+.+.+++|+.+++..++.+.
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c---~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC---SLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc---cccccceeeecCCCCchHHHHHHHh
Confidence 9999999999888888888899999999999999999999999888887444 5678999999999999999998887
Q ss_pred cCCCCCceEEEeeceeccCCChhHHHHHhhcCCceEEee
Q 007372 549 RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCL 587 (606)
Q Consensus 549 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 587 (606)
.|++|+.+++-+++-... +.+.++...+|++.|..
T Consensus 424 --~c~~Leri~l~~~q~vtk--~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 424 --ICRNLERIELIDCQDVTK--EAISRFATHLPNIKVHA 458 (483)
T ss_pred --hCcccceeeeechhhhhh--hhhHHHHhhCccceehh
Confidence 699999999999885544 77888888888887654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2.6e-27 Score=266.66 Aligned_cols=471 Identities=17% Similarity=0.079 Sum_probs=195.2
Q ss_pred CCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCCh-hhhhhh-hcCCcceEeccCCCCCcHHHHHHHhhcCCCcc
Q 007372 42 PSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQD-HSLCAF-LTPRIRELNLWCCSSLSYQILASIGHNCPNLR 119 (606)
Q Consensus 42 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~-~~l~~~-~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 119 (606)
.+++.|+++++.+..... ..+..+++|+.|+++++.++. .+...+ ..++|++|+++++..... .+. ..+++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~--~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS--IPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc--cCc--cccCCCC
Confidence 467778888776554332 233347888888887777653 222333 246777777766532110 000 2355566
Q ss_pred eeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCccc-chHHHHHH-
Q 007372 120 VLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLER-DAFFLIRR- 197 (606)
Q Consensus 120 ~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~-~~~~~~~~- 197 (606)
+|+++.+...+. +...+..+++|+.|+++.+.. ....+..+.. .++|+.|+++++... ..+..+..
T Consensus 144 ~L~Ls~n~~~~~------~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 144 TLDLSNNMLSGE------IPNDIGSFSSLKVLDLGGNVL-VGKIPNSLTN-----LTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred EEECcCCccccc------CChHHhcCCCCCEEECccCcc-cccCChhhhh-----CcCCCeeeccCCCCcCcCChHHcCc
Confidence 666644422110 112234455555555554220 0011111111 244555554443221 11111110
Q ss_pred ---hhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhcc
Q 007372 198 ---IGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG 274 (606)
Q Consensus 198 ---~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 274 (606)
...........+..+..+.++++|++|+++.+.+.... +.....+++|++|++++|.... .....+.
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~---------~~p~~l~ 281 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSG---------PIPPSIF 281 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeec---------cCchhHh
Confidence 00000000011112333455677777777766554422 2223446677777776653211 1112233
Q ss_pred CCCCccEEEeccccccCCC--------Cc-------cccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCC
Q 007372 275 SCHHLTGLSLTRCRHNHQG--------TF-------KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSL 339 (606)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~~--------~~-------~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 339 (606)
.+++|++|++++|...... .+ ..++... ......+++|+.|+++++ .++.. +...+..+++|
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~~~~L 358 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSN-KFSGE-IPKNLGKHNNL 358 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCC-CCcCc-CChHHhCCCCC
Confidence 4455555555544210000 00 0011100 001113344444444444 22111 11112234444
Q ss_pred cEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEE
Q 007372 340 KKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALN 419 (606)
Q Consensus 340 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 419 (606)
+.|+++++... .. +.......++|+.|++.+|. +.......+..+++|+.|++++| .++......+..+++|+.|+
T Consensus 359 ~~L~Ls~n~l~-~~-~p~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 359 TVLDLSTNNLT-GE-IPEGLCSSGNLFKLILFSNS-LEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred cEEECCCCeeE-ee-CChhHhCcCCCCEEECcCCE-ecccCCHHHhCCCCCCEEECcCC-EeeeECChhHhcCCCCCEEE
Confidence 44444443210 00 00011122344444444433 22222233444555666666555 33333233344555566666
Q ss_pred ccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEE
Q 007372 420 LTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDL 499 (606)
Q Consensus 420 l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 499 (606)
+++|.+++..... ...+++|+.|++++|. +.... .... ..++|+.|++++| .++......+ ..+++|+.|
T Consensus 435 Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~-~~~~~-p~~~-----~~~~L~~L~ls~n-~l~~~~~~~~-~~l~~L~~L 504 (968)
T PLN00113 435 ISNNNLQGRINSR-KWDMPSLQMLSLARNK-FFGGL-PDSF-----GSKRLENLDLSRN-QFSGAVPRKL-GSLSELMQL 504 (968)
T ss_pred CcCCcccCccChh-hccCCCCcEEECcCce-eeeec-Cccc-----ccccceEEECcCC-ccCCccChhh-hhhhccCEE
Confidence 6655544322111 1234556666665554 21110 0011 2345555666555 3332222222 234555666
Q ss_pred EecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccC
Q 007372 500 CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 567 (606)
Q Consensus 500 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 567 (606)
++++|. +.......+. .+++|+.|++++|. ++......+. .+++|+.|++++|++..
T Consensus 505 ~Ls~N~-l~~~~p~~~~-------~l~~L~~L~Ls~N~-l~~~~p~~~~--~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 505 KLSENK-LSGEIPDELS-------SCKKLVSLDLSHNQ-LSGQIPASFS--EMPVLSQLDLSQNQLSG 561 (968)
T ss_pred ECcCCc-ceeeCChHHc-------CccCCCEEECCCCc-ccccCChhHh--CcccCCEEECCCCcccc
Confidence 665554 3332223333 35556666666552 4332222222 34556666666665443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1e-26 Score=261.89 Aligned_cols=465 Identities=17% Similarity=0.073 Sum_probs=277.0
Q ss_pred cCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCCCc
Q 007372 40 ALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCPNL 118 (606)
Q Consensus 40 ~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 118 (606)
..++|++|+++++.+...... ..+++|++|++++|.++......+. .++|++|++++|.... .....+ ..+++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~-~~l~~L 190 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSL-TNLTSL 190 (968)
T ss_pred cCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc-cCChhh-hhCcCC
Confidence 346777788777665431111 2356777777776666543333333 3677777776653211 111112 456667
Q ss_pred ceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCccc-chHHHHHH
Q 007372 119 RVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLER-DAFFLIRR 197 (606)
Q Consensus 119 ~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~-~~~~~~~~ 197 (606)
++|+++.+...+. +...+..+++|+.|++..+.. ....+..+. .+++|+.|+++++... ..+..+..
T Consensus 191 ~~L~L~~n~l~~~------~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 191 EFLTLASNQLVGQ------IPRELGQMKSLKWIYLGYNNL-SGEIPYEIG-----GLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred CeeeccCCCCcCc------CChHHcCcCCccEEECcCCcc-CCcCChhHh-----cCCCCCEEECcCceeccccChhHhC
Confidence 7777755432111 113344556666666664320 001111122 2356666666554322 11111111
Q ss_pred ----hhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhc
Q 007372 198 ----IGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL 273 (606)
Q Consensus 198 ----~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 273 (606)
...........+..+..+.++++|++|+++.+.+... ++.....+++|+.|++.+|.. .......+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~---------~~~~~~~~ 328 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNF---------TGKIPVAL 328 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCcc---------CCcCChhH
Confidence 0000000000111223334467777777776655542 233334567777777776533 21222345
Q ss_pred cCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHH
Q 007372 274 GSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDL 353 (606)
Q Consensus 274 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 353 (606)
..+++|+.|++.++. ++.. +......+++|+.|+++++ .++... ...+..+++|+.|++.++....
T Consensus 329 ~~l~~L~~L~L~~n~---------l~~~-~p~~l~~~~~L~~L~Ls~n-~l~~~~-p~~~~~~~~L~~L~l~~n~l~~-- 394 (968)
T PLN00113 329 TSLPRLQVLQLWSNK---------FSGE-IPKNLGKHNNLTVLDLSTN-NLTGEI-PEGLCSSGNLFKLILFSNSLEG-- 394 (968)
T ss_pred hcCCCCCEEECcCCC---------CcCc-CChHHhCCCCCcEEECCCC-eeEeeC-ChhHhCcCCCCEEECcCCEecc--
Confidence 677889999998764 2221 1122236789999999988 443221 1223356899999998875321
Q ss_pred HHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHH
Q 007372 354 AFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSIL 433 (606)
Q Consensus 354 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l 433 (606)
.+......+++|+.|++++|. ++......+..+++|+.|++++| .+.......+..+++|+.|++++|.+.......+
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNS-FSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCE-eeeECChhHhcCCCCCEEECcCC-cccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 122233568999999999987 55555556778999999999998 6665444455678999999999997654322211
Q ss_pred HhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHH
Q 007372 434 AQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVE 513 (606)
Q Consensus 434 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 513 (606)
..++|+.|++++|. ++......+. .+++|+.|++++| .+.......+ ..+++|++|++++|. ++.....
T Consensus 473 --~~~~L~~L~ls~n~-l~~~~~~~~~-----~l~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~~~~p~ 541 (968)
T PLN00113 473 --GSKRLENLDLSRNQ-FSGAVPRKLG-----SLSELMQLKLSEN-KLSGEIPDEL-SSCKKLVSLDLSHNQ-LSGQIPA 541 (968)
T ss_pred --ccccceEEECcCCc-cCCccChhhh-----hhhccCEEECcCC-cceeeCChHH-cCccCCCEEECCCCc-ccccCCh
Confidence 35799999999997 5543333344 5789999999999 6654444444 468999999999998 6655555
Q ss_pred HHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 514 ALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 514 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.+. .+++|+.|++++|. ++......+. .+++|+.|++++|++...
T Consensus 542 ~~~-------~l~~L~~L~Ls~N~-l~~~~p~~l~--~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 542 SFS-------EMPVLSQLDLSQNQ-LSGEIPKNLG--NVESLVQVNISHNHLHGS 586 (968)
T ss_pred hHh-------CcccCCEEECCCCc-ccccCChhHh--cCcccCEEeccCCcceee
Confidence 555 48899999999995 6543334443 578999999999997654
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.3e-22 Score=173.81 Aligned_cols=287 Identities=21% Similarity=0.211 Sum_probs=203.0
Q ss_pred CCchhhhHHHHHHhcCchhhhhhHHhhhHHHHhhhccccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCCh
Q 007372 2 ETVPSAVLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQD 81 (606)
Q Consensus 2 ~~LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~ 81 (606)
..||||++. -||+.|+.+++++++.|||+|+.++ .--..++.+|+.+-++.+..+.++.+ .+...+.+...-+.+
T Consensus 99 ~slpDEill-~IFs~L~kk~LL~~~~VC~Rfyr~~--~de~lW~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~~~~~ 173 (419)
T KOG2120|consen 99 DSLPDEILL-GIFSCLCKKELLKVSGVCKRFYRLA--SDESLWQTLDLTGRNIHPDVLGRLLS--RGVIVFRLARSFMDQ 173 (419)
T ss_pred ccCCHHHHH-HHHHhccHHHHHHHHHHHHHHhhcc--ccccceeeeccCCCccChhHHHHHHh--CCeEEEEcchhhhcC
Confidence 479999999 5999999999999999999999998 22245677899998888877777766 344444444333344
Q ss_pred hhhhhhh---cCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccC
Q 007372 82 HSLCAFL---TPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGF 158 (606)
Q Consensus 82 ~~l~~~~---~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~ 158 (606)
..+.... ...|++|||++. .++...+..+.+.|.+|+.|.+.+.. +. +.+..-+.....|+.|+++..
T Consensus 174 prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~-----Ld-D~I~~~iAkN~~L~~lnlsm~-- 244 (419)
T KOG2120|consen 174 PRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLR-----LD-DPIVNTIAKNSNLVRLNLSMC-- 244 (419)
T ss_pred chhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccc-----cC-cHHHHHHhccccceeeccccc--
Confidence 3232222 267999999874 77778888888899999999997663 22 333344556678999999854
Q ss_pred cccccccchhhhhhhcccceeEEeecCCcccc-hHHHHHHhhcccccccCcccccccccCCCCccEEeccc--CCCCHHH
Q 007372 159 GVEVDACAFQSIIFFLPSTIKSLKLQPVLERD-AFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVL--DVITDEL 235 (606)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~ 235 (606)
.++...+..- ....|..|..|+++++.... ...+.. ..+ .++|+.|++++ .++....
T Consensus 245 -sG~t~n~~~l-l~~scs~L~~LNlsWc~l~~~~Vtv~V-----------~hi-------se~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 245 -SGFTENALQL-LLSSCSRLDELNLSWCFLFTEKVTVAV-----------AHI-------SETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred -cccchhHHHH-HHHhhhhHhhcCchHhhccchhhhHHH-----------hhh-------chhhhhhhhhhhHhhhhhhH
Confidence 3444444433 34568899999999874321 111110 111 67899999987 4455667
Q ss_pred HHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccE
Q 007372 236 LITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLES 315 (606)
Q Consensus 236 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 315 (606)
+..+.+.||+|.+||+++| ..+++..++.+.+++.|++|.+++|-. +....+.. ....|.|.+
T Consensus 305 ~~tL~~rcp~l~~LDLSD~--------v~l~~~~~~~~~kf~~L~~lSlsRCY~--------i~p~~~~~-l~s~psl~y 367 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDS--------VMLKNDCFQEFFKFNYLQHLSLSRCYD--------IIPETLLE-LNSKPSLVY 367 (419)
T ss_pred HHHHHHhCCceeeeccccc--------cccCchHHHHHHhcchheeeehhhhcC--------CChHHeee-eccCcceEE
Confidence 8888899999999999998 567777788888999999999999843 33222222 236689999
Q ss_pred EEcCCCCCCCHHHHHHHHHcCCCCcE
Q 007372 316 VRLGGFSKVSDAGFAAILLSCHSLKK 341 (606)
Q Consensus 316 L~l~~~~~~~~~~~~~~~~~~~~L~~ 341 (606)
|++.|| ++|..+..+...+|+|+.
T Consensus 368 Ldv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 368 LDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred EEeccc--cCchHHHHHHHhCccccc
Confidence 999997 556666666667777654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=7.8e-23 Score=196.08 Aligned_cols=327 Identities=16% Similarity=0.116 Sum_probs=195.6
Q ss_pred cceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCC
Q 007372 176 STIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRP 255 (606)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 255 (606)
++|+.+.+..+....++.+... ..+|+.|+|.++.|+...-+.+ +.+|.|+.||++.+.
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~--------------------sghl~~L~L~~N~I~sv~se~L-~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHE--------------------SGHLEKLDLRHNLISSVTSEEL-SALPALRSLDLSRNL 160 (873)
T ss_pred Ccceeeeeccchhhhccccccc--------------------ccceeEEeeeccccccccHHHH-HhHhhhhhhhhhhch
Confidence 6666666666554444444221 4457777777766665444444 346777777777653
Q ss_pred CCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHc
Q 007372 256 NTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLS 335 (606)
Q Consensus 256 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 335 (606)
+ +......+..-.++++|+++++. +++.+.-.+. .+.+|..|.++.+ +++.-... .++.
T Consensus 161 i---------s~i~~~sfp~~~ni~~L~La~N~---------It~l~~~~F~-~lnsL~tlkLsrN-rittLp~r-~Fk~ 219 (873)
T KOG4194|consen 161 I---------SEIPKPSFPAKVNIKKLNLASNR---------ITTLETGHFD-SLNSLLTLKLSRN-RITTLPQR-SFKR 219 (873)
T ss_pred h---------hcccCCCCCCCCCceEEeecccc---------cccccccccc-ccchheeeecccC-cccccCHH-Hhhh
Confidence 2 11111223344567777777643 4433332222 4456777777766 44432222 2345
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCC
Q 007372 336 CHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL 415 (606)
Q Consensus 336 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 415 (606)
+|+|+.|++..+..-...+ -.++.+++|+.|.+..+. +....-..+-.+.++++|+|+.+ .+....-..+.+++.|
T Consensus 220 L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSL 295 (873)
T ss_pred cchhhhhhccccceeeehh--hhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccc-hhhhhhcccccccchh
Confidence 7777777776653211111 123456777777776654 32222223446788888888887 6665555566678888
Q ss_pred CEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCC
Q 007372 416 TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG 495 (606)
Q Consensus 416 ~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 495 (606)
+.|+++.|.|.......+. .+++|+.|++++|. ++...-..+. .+..|++|+++.| .++...-..+ .++.+
T Consensus 296 ~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~-i~~l~~~sf~-----~L~~Le~LnLs~N-si~~l~e~af-~~lss 366 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNR-ITRLDEGSFR-----VLSQLEELNLSHN-SIDHLAEGAF-VGLSS 366 (873)
T ss_pred hhhccchhhhheeecchhh-hcccceeEeccccc-cccCChhHHH-----HHHHhhhhccccc-chHHHHhhHH-HHhhh
Confidence 8888888866555444433 37888888888876 4433333333 3558888888887 4443222222 35578
Q ss_pred CcEEEecCCC---CCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 496 IIDLCVRSCF---YVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 496 L~~L~l~~~~---~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
|++|++++|. .|.| +...+. ++++|++|++.|| ++...+...+. .+++|++|++.+|.|...
T Consensus 367 L~~LdLr~N~ls~~IED-aa~~f~-------gl~~LrkL~l~gN-qlk~I~krAfs--gl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIED-AAVAFN-------GLPSLRKLRLTGN-QLKSIPKRAFS--GLEALEHLDLGDNAIASI 431 (873)
T ss_pred hhhhcCcCCeEEEEEec-chhhhc-------cchhhhheeecCc-eeeecchhhhc--cCcccceecCCCCcceee
Confidence 8888888876 2333 333333 4788899999888 57776666664 678899999998887655
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.1e-21 Score=185.28 Aligned_cols=356 Identities=19% Similarity=0.139 Sum_probs=236.4
Q ss_pred hhhhcccceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEE
Q 007372 170 IIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVEL 249 (606)
Q Consensus 170 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L 249 (606)
+....++.-++|+++++....+.- ..+.++++|+++++..+.++. ++.+.....+|+.|
T Consensus 72 l~g~lp~~t~~LdlsnNkl~~id~-------------------~~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 72 LKGFLPSQTQTLDLSNNKLSHIDF-------------------EFFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKL 130 (873)
T ss_pred cCCcCccceeeeeccccccccCcH-------------------HHHhcCCcceeeeeccchhhh--cccccccccceeEE
Confidence 333345667778888875443322 233558999999988776653 44444445678999
Q ss_pred EcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHH
Q 007372 250 DLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGF 329 (606)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 329 (606)
++..+. ++...-+.+..++.|+.|+++.+.. +......+. .-.++++|+++++ .+++...
T Consensus 131 ~L~~N~---------I~sv~se~L~~l~alrslDLSrN~i---------s~i~~~sfp-~~~ni~~L~La~N-~It~l~~ 190 (873)
T KOG4194|consen 131 DLRHNL---------ISSVTSEELSALPALRSLDLSRNLI---------SEIPKPSFP-AKVNIKKLNLASN-RITTLET 190 (873)
T ss_pred eeeccc---------cccccHHHHHhHhhhhhhhhhhchh---------hcccCCCCC-CCCCceEEeeccc-ccccccc
Confidence 998853 3333344566778899999987542 111111111 2357999999988 6665433
Q ss_pred HHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcc
Q 007372 330 AAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSI 409 (606)
Q Consensus 330 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 409 (606)
.. +.++.+|..|+++.+.. +... ...++.+++|+.|+|..+. +.......+.++++|+.|.+..+ .+....-.+|
T Consensus 191 ~~-F~~lnsL~tlkLsrNri-ttLp-~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~F 265 (873)
T KOG4194|consen 191 GH-FDSLNSLLTLKLSRNRI-TTLP-QRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAF 265 (873)
T ss_pred cc-ccccchheeeecccCcc-cccC-HHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhc-CcccccCcce
Confidence 33 22456888899988752 2211 2233557899999998876 55555556778899999999876 5554444556
Q ss_pred cCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHH
Q 007372 410 SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI 489 (606)
Q Consensus 410 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 489 (606)
..+.++++|+|..|+++...-..+. +++.|+.|++++|. +....+.... .+++|+.|++++| .++...-..+
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~Na-I~rih~d~Ws-----ftqkL~~LdLs~N-~i~~l~~~sf 337 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNA-IQRIHIDSWS-----FTQKLKELDLSSN-RITRLDEGSF 337 (873)
T ss_pred eeecccceeecccchhhhhhccccc-ccchhhhhccchhh-hheeecchhh-----hcccceeEecccc-ccccCChhHH
Confidence 6788999999999987654433333 57899999999987 5544454444 6899999999998 6665444444
Q ss_pred HHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCH---HHHHHhhcCCCCCceEEEeeceecc
Q 007372 490 AAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV---DSLRWVKRPSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 490 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~---~~~~~l~~~~~~~L~~L~l~~~~~~ 566 (606)
..+..|++|.+++|. |+...--.+. ++++|++|+++.|. ++. ++...+ ..+|+|+.|++.||++.
T Consensus 338 -~~L~~Le~LnLs~Ns-i~~l~e~af~-------~lssL~~LdLr~N~-ls~~IEDaa~~f--~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 338 -RVLSQLEELNLSHNS-IDHLAEGAFV-------GLSSLHKLDLRSNE-LSWCIEDAAVAF--NGLPSLRKLRLTGNQLK 405 (873)
T ss_pred -HHHHHhhhhcccccc-hHHHHhhHHH-------HhhhhhhhcCcCCe-EEEEEecchhhh--ccchhhhheeecCceee
Confidence 345789999999998 6654433343 47799999999884 432 222233 35899999999999976
Q ss_pred CCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 567 SKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 567 ~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
.. ....+...+.|. +++.+|.+...
T Consensus 406 ~I----~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 406 SI----PKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred ec----chhhhccCcccceecCCCCcceee
Confidence 54 223334556676 88888876654
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=1.9e-17 Score=162.66 Aligned_cols=221 Identities=23% Similarity=0.224 Sum_probs=107.0
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCC---CCCcEEEccCCCCCChHHHHc----ccCC-CCCCEEEccCCCCChHHHHHH
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASS---RNLEVLDLGGCKSIADTCLRS----ISCL-RKLTALNLTGADITDSGLSIL 433 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~i~~~~~~~l 433 (606)
+++|+.|++++|. +.......+..+ ++|++|++++| .+++.+... +..+ ++|+.|++++|.+++.+...+
T Consensus 80 ~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 4555555555554 322222222211 34666666665 454433322 2344 566666666666654333222
Q ss_pred ---HhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHH---HcCCCCcEEEecCCCCC
Q 007372 434 ---AQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYV 507 (606)
Q Consensus 434 ---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l 507 (606)
...++.|++|++++|. +++.++..+.... ...++|++|++++| .+++.++..+. ..+++|++|++++|. +
T Consensus 158 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l-~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l 233 (319)
T cd00116 158 AKALRANRDLKELNLANNG-IGDAGIRALAEGL-KANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-L 233 (319)
T ss_pred HHHHHhCCCcCEEECcCCC-CchHHHHHHHHHH-HhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-C
Confidence 2234566666666664 5544433332100 12346666666666 55554444332 234566666666665 6
Q ss_pred CHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhh--cCCCCCceEEEeeceeccCCChhHHHHHhhcC-CceE
Q 007372 508 TDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLASKGNPVITEIHNER-PWLT 584 (606)
Q Consensus 508 ~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~l~ 584 (606)
++.++..+....+. ..+.|++|++++| .+++.+...+. ...+++|+.+++++|.+.+.+...+..+.... +.+.
T Consensus 234 ~~~~~~~l~~~~~~--~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 234 TDAGAAALASALLS--PNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred chHHHHHHHHHHhc--cCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence 66555555442110 1256666666666 35543332221 12345666666666666655333333333322 3333
Q ss_pred -Eeecccc
Q 007372 585 -FCLDGCE 591 (606)
Q Consensus 585 -~~~~g~~ 591 (606)
+++.+++
T Consensus 311 ~~~~~~~~ 318 (319)
T cd00116 311 SLWVKDDS 318 (319)
T ss_pred hcccCCCC
Confidence 5555544
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=4.7e-17 Score=159.87 Aligned_cols=192 Identities=25% Similarity=0.296 Sum_probs=125.3
Q ss_pred CCccEEEccCCCCCCHHHHHH----hcCC-CCCcEEEccCCCCCChHHH----HcccCCCCCCEEEccCCCCChHHHHHH
Q 007372 363 CALVEVRLLWCRLITSETVKK----LASS-RNLEVLDLGGCKSIADTCL----RSISCLRKLTALNLTGADITDSGLSIL 433 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~l 433 (606)
++|++|++++|. +.+.+... +..+ ++|+.|++++| .++.... ..+..+++|++|++++|.+++.++..+
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 445566665554 44333322 3345 77888888877 5553332 234466778888888888877665554
Q ss_pred Hh---cCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcC----CCCcEEEecCCCC
Q 007372 434 AQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG----IGIIDLCVRSCFY 506 (606)
Q Consensus 434 ~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~ 506 (606)
.. ..++|+.|++++|. +++.+...+... ...+++|++|++++| .+++.++..+++.+ +.|++|++++|.
T Consensus 186 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~-~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~- 261 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNG-LTDEGASALAET-LASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND- 261 (319)
T ss_pred HHHHHhCCCCCEEeccCCc-cChHHHHHHHHH-hcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-
Confidence 43 34588888888885 666555443311 135678888888888 67777777766654 688999998886
Q ss_pred CCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhc--CCC-CCceEEEeecee
Q 007372 507 VTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR--PSF-RGLHWLGIGQTR 564 (606)
Q Consensus 507 l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~--~~~-~~L~~L~l~~~~ 564 (606)
+++.+...+....+ .+++|+++++++| .+++.+...+.. ... +.|++|++.+++
T Consensus 262 i~~~~~~~l~~~~~---~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 262 ITDDGAKDLAEVLA---EKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCcHHHHHHHHHHh---cCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 87766666655444 5678899999888 577765544431 123 578888888776
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.9e-17 Score=143.42 Aligned_cols=261 Identities=17% Similarity=0.228 Sum_probs=199.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcC-CCCccEEEccCCCCCCHHHHHH-hcCCCC
Q 007372 312 GLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGV-PCALVEVRLLWCRLITSETVKK-LASSRN 389 (606)
Q Consensus 312 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~~l~~~~~~~-l~~~~~ 389 (606)
..+.+++.+- .+.......+.+ .....+++-... ..+..+...... -..|++++++... ++...+.. +..|.+
T Consensus 137 lW~~lDl~~r-~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~s~-it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 137 LWQTLDLTGR-NIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSNSV-ITVSTLHGILSQCSK 211 (419)
T ss_pred ceeeeccCCC-ccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcchhh-eeHHHHHHHHHHHHh
Confidence 4566777665 555555555433 344455443211 222222222222 2468899998765 66655544 447999
Q ss_pred CcEEEccCCCCCChHHHHcccCCCCCCEEEccCC-CCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCC
Q 007372 390 LEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ 468 (606)
Q Consensus 390 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 468 (606)
|+.|.+.+. .+.|.....++...+|+.|++++| .++..++..+..+|+.|++|+++.|...++. +..+.. .-.+
T Consensus 212 Lk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~---hise 286 (419)
T KOG2120|consen 212 LKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVA---HISE 286 (419)
T ss_pred hhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHh---hhch
Confidence 999999997 889988889999999999999999 7999999999999999999999999966665 333321 3458
Q ss_pred CCCEEecCCCC-CCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 469 SLTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 469 ~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
.|..|+++++. ++....+..+...||+|.+|++++|..+++..+..+.+ ++.|++|.++.|+.+....+-.+
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-------f~~L~~lSlsRCY~i~p~~~~~l 359 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-------FNYLQHLSLSRCYDIIPETLLEL 359 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-------cchheeeehhhhcCCChHHeeee
Confidence 99999999984 56667888899999999999999999999988888885 99999999999998887666555
Q ss_pred hcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceEEeecccccccc
Q 007372 548 KRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCH 595 (606)
Q Consensus 548 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~ 595 (606)
. ..|+|..|++.|+- ....++-+...+|++.+.+..-.+.|.
T Consensus 360 ~--s~psl~yLdv~g~v----sdt~mel~~e~~~~lkin~q~~~~iar 401 (419)
T KOG2120|consen 360 N--SKPSLVYLDVFGCV----SDTTMELLKEMLSHLKINCQHFNFIAR 401 (419)
T ss_pred c--cCcceEEEEecccc----CchHHHHHHHhCccccccceeeeeeec
Confidence 4 68999999999998 666777777888999888877777666
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=5.4e-18 Score=164.52 Aligned_cols=369 Identities=16% Similarity=0.139 Sum_probs=237.3
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhhcCCcceEeccCCCCCcHHHHHHHhhcCCCc
Q 007372 39 QALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNL 118 (606)
Q Consensus 39 ~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 118 (606)
...|.++-.|++++..+...++.-.+.++.++.|.|...++...+-+.-.+.+|++|.++++..++..+ .+ +.+|.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG--EL-s~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG--EL-SDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh--hh-ccchhh
Confidence 456788899999999987777777777999999999888877666555557999999998875444322 22 578889
Q ss_pred ceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHh
Q 007372 119 RVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRI 198 (606)
Q Consensus 119 ~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 198 (606)
+.+.+..+......|. .-+-.+..|..|+++.+. ..-.+.++.. ..++-.|+++++.+..++.-
T Consensus 81 Rsv~~R~N~LKnsGiP-----~diF~l~dLt~lDLShNq--L~EvP~~LE~-----AKn~iVLNLS~N~IetIPn~---- 144 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIP-----TDIFRLKDLTILDLSHNQ--LREVPTNLEY-----AKNSIVLNLSYNNIETIPNS---- 144 (1255)
T ss_pred HHHhhhccccccCCCC-----chhcccccceeeecchhh--hhhcchhhhh-----hcCcEEEEcccCccccCCch----
Confidence 9988865544444444 444467888999998643 2222333332 37888999999877766553
Q ss_pred hcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCC
Q 007372 199 GRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHH 278 (606)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 278 (606)
.+.++..|-.|+|+++.+.. ++.-.+.+.+|+.|+++++ .+....++.+..+..
T Consensus 145 ---------------lfinLtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL~Ls~N---------PL~hfQLrQLPsmts 198 (1255)
T KOG0444|consen 145 ---------------LFINLTDLLFLDLSNNRLEM--LPPQIRRLSMLQTLKLSNN---------PLNHFQLRQLPSMTS 198 (1255)
T ss_pred ---------------HHHhhHhHhhhccccchhhh--cCHHHHHHhhhhhhhcCCC---------hhhHHHHhcCccchh
Confidence 22346777888999887753 4444466889999999986 344445666777788
Q ss_pred ccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHH
Q 007372 279 LTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDL 358 (606)
Q Consensus 279 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 358 (606)
|+.|.++++. -+-.++..-...+.+|..++++.+ .++- .+..+...++|+.|+++++.. +. +...
T Consensus 199 L~vLhms~Tq---------RTl~N~Ptsld~l~NL~dvDlS~N-~Lp~--vPecly~l~~LrrLNLS~N~i-te--L~~~ 263 (1255)
T KOG0444|consen 199 LSVLHMSNTQ---------RTLDNIPTSLDDLHNLRDVDLSEN-NLPI--VPECLYKLRNLRRLNLSGNKI-TE--LNMT 263 (1255)
T ss_pred hhhhhccccc---------chhhcCCCchhhhhhhhhcccccc-CCCc--chHHHhhhhhhheeccCcCce-ee--eecc
Confidence 8888888753 111112112234557777788765 3332 223344568888888887642 21 1112
Q ss_pred HcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHH-HcccCCCCCCEEEccCCCC--ChHHHHHHHh
Q 007372 359 TGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCL-RSISCLRKLTALNLTGADI--TDSGLSILAQ 435 (606)
Q Consensus 359 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i--~~~~~~~l~~ 435 (606)
...+.+|++|+++.++ ++. ....++.++.|++|.+.++ .++-+++ +.++.+.+|+.+....|.+ -..++ .
T Consensus 264 ~~~W~~lEtLNlSrNQ-Lt~-LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl---c- 336 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQ-LTV-LPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL---C- 336 (1255)
T ss_pred HHHHhhhhhhccccch-hcc-chHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccccCchhh---h-
Confidence 2346788888888776 332 2344566778888877666 5554433 4456666777777766633 23332 2
Q ss_pred cCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCC
Q 007372 436 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGI 481 (606)
Q Consensus 436 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l 481 (606)
.|+.|+.|.+..|..++-...-. .++.|+.|++..++++
T Consensus 337 RC~kL~kL~L~~NrLiTLPeaIH-------lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLITLPEAIH-------LLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHHhcccccceeechhhhh-------hcCCcceeeccCCcCc
Confidence 26777777777777665322221 3467777777777665
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.59 E-value=5.6e-15 Score=167.01 Aligned_cols=345 Identities=18% Similarity=0.133 Sum_probs=176.9
Q ss_pred HHHHhCCCCceeeeeeccCcccccc--cchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccccccCcccccccccC
Q 007372 140 IMLTSCLQLESLSLKIRGFGVEVDA--CAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYS 217 (606)
Q Consensus 140 ~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (606)
..+.++++|+.|.+..... ..... ..+..-....+++|+.|.+.++....++..+ .
T Consensus 552 ~aF~~m~~L~~L~~~~~~~-~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f---------------------~ 609 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKW-DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF---------------------R 609 (1153)
T ss_pred HHHhcCccccEEEEecccc-cccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC---------------------C
Confidence 3456788888888864210 00000 0011111122457888888776544443321 2
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
+.+|++|++..+.+.. .... ...+++|+.|+++++.... . +..+..+++|++|++.+|..
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~~-~~~l~~Lk~L~Ls~~~~l~-----~-----ip~ls~l~~Le~L~L~~c~~-------- 669 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWDG-VHSLTGLRNIDLRGSKNLK-----E-----IPDLSMATNLETLKLSDCSS-------- 669 (1153)
T ss_pred ccCCcEEECcCccccc-cccc-cccCCCCCEEECCCCCCcC-----c-----CCccccCCcccEEEecCCCC--------
Confidence 5778888887766553 2222 2457888888888763321 1 11355677888888887742
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
+. .+..-...+++|+.|++++|..+...... ..+++|+.|.+++|..+.. +.....+|+.|+++++. +.
T Consensus 670 L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~ 738 (1153)
T PLN03210 670 LV--ELPSSIQYLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IE 738 (1153)
T ss_pred cc--ccchhhhccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCc-cc
Confidence 11 11112235678888888887544321111 1467788888887754321 22234577777777765 22
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCC--ChH----HHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 007372 378 SETVKKLASSRNLEVLDLGGCKSI--ADT----CLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRV 451 (606)
Q Consensus 378 ~~~~~~l~~~~~L~~L~l~~~~~~--~~~----~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 451 (606)
. +.....+++|+.|.+.++... ... ........++|+.|++++|......... ..++++|+.|++++|..+
T Consensus 739 ~--lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 739 E--FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINL 815 (1153)
T ss_pred c--ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCc
Confidence 1 111113566666666543110 000 0000112456777777766322111111 234667777777777644
Q ss_pred CHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEE
Q 007372 452 TDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRL 531 (606)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L 531 (606)
+. +.. ...+++|+.|++++|..+... ....++|++|++++|. ++... ..+. .+++|+.|
T Consensus 816 ~~-----LP~--~~~L~sL~~L~Ls~c~~L~~~-----p~~~~nL~~L~Ls~n~-i~~iP-~si~-------~l~~L~~L 874 (1153)
T PLN03210 816 ET-----LPT--GINLESLESLDLSGCSRLRTF-----PDISTNISDLNLSRTG-IEEVP-WWIE-------KFSNLSFL 874 (1153)
T ss_pred Ce-----eCC--CCCccccCEEECCCCCccccc-----cccccccCEeECCCCC-CccCh-HHHh-------cCCCCCEE
Confidence 42 110 013567777777776554321 1122566777776664 44211 1222 46667777
Q ss_pred eccCCCCCCHHHHHHhhcCCCCCceEEEeecee
Q 007372 532 DLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 532 ~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 564 (606)
++++|..++..... ...+++|+.+++++|.
T Consensus 875 ~L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 875 DMNGCNNLQRVSLN---ISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCcCccCcc---cccccCCCeeecCCCc
Confidence 77776665543321 1235566666666664
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=3.4e-17 Score=166.26 Aligned_cols=222 Identities=20% Similarity=0.170 Sum_probs=130.9
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCC
Q 007372 311 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 390 (606)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 390 (606)
.+|++++++.. +.+ .+..+...|++|+.+++..+.. ..+..-.....+|+.|.+..|. +.. ....+..+.+|
T Consensus 241 ~nl~~~dis~n-~l~--~lp~wi~~~~nle~l~~n~N~l---~~lp~ri~~~~~L~~l~~~~ne-l~y-ip~~le~~~sL 312 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLS--NLPEWIGACANLEALNANHNRL---VALPLRISRITSLVSLSAAYNE-LEY-IPPFLEGLKSL 312 (1081)
T ss_pred ccceeeecchh-hhh--cchHHHHhcccceEecccchhH---HhhHHHHhhhhhHHHHHhhhhh-hhh-CCCccccccee
Confidence 36777777765 222 2335555677888877766542 1111111112344444444332 110 00112235556
Q ss_pred cEEEccCCCCCChHH---H-------H-------------cc--cCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEc
Q 007372 391 EVLDLGGCKSIADTC---L-------R-------------SI--SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCL 445 (606)
Q Consensus 391 ~~L~l~~~~~~~~~~---~-------~-------------~l--~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l 445 (606)
+.|+|..+ .+.... + . .. ...+.|..|.+.+|.++|..+..+. ++++|+.|++
T Consensus 313 ~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHL 390 (1081)
T ss_pred eeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeee
Confidence 66666554 222111 0 0 01 1245567788888888888777655 4789999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccC
Q 007372 446 RGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKS 525 (606)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 525 (606)
++|. ++...-..+. .+..|++|++++| .++... ..+ ..|+.|+.|...+|- +.. +..+.. +
T Consensus 391 syNr-L~~fpas~~~-----kle~LeeL~LSGN-kL~~Lp-~tv-a~~~~L~tL~ahsN~-l~~--fPe~~~-------l 451 (1081)
T KOG0618|consen 391 SYNR-LNSFPASKLR-----KLEELEELNLSGN-KLTTLP-DTV-ANLGRLHTLRAHSNQ-LLS--FPELAQ-------L 451 (1081)
T ss_pred cccc-cccCCHHHHh-----chHHhHHHhcccc-hhhhhh-HHH-HhhhhhHHHhhcCCc-eee--chhhhh-------c
Confidence 9985 3322222233 5678999999998 666544 233 367889999887775 332 234443 8
Q ss_pred CCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeecee
Q 007372 526 KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 526 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 564 (606)
+.|+.+|++-| +++...+....+ -|+|+.||++||.
T Consensus 452 ~qL~~lDlS~N-~L~~~~l~~~~p--~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 452 PQLKVLDLSCN-NLSEVTLPEALP--SPNLKYLDLSGNT 487 (1081)
T ss_pred CcceEEecccc-hhhhhhhhhhCC--CcccceeeccCCc
Confidence 89999999877 687766655541 2799999999998
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=2.5e-16 Score=160.09 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=110.4
Q ss_pred CCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCC
Q 007372 387 SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI 466 (606)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 466 (606)
++.|+.|.+.++ .++|..+..+..+++||.|+|+.|.++......+. .++.|++|++++|. ++... ..++ .
T Consensus 358 ~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~-kle~LeeL~LSGNk-L~~Lp-~tva-----~ 428 (1081)
T KOG0618|consen 358 HAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR-KLEELEELNLSGNK-LTTLP-DTVA-----N 428 (1081)
T ss_pred hHHHHHHHHhcC-cccccchhhhccccceeeeeecccccccCCHHHHh-chHHhHHHhcccch-hhhhh-HHHH-----h
Confidence 467888889887 89999999999999999999999965533333322 36899999999997 55444 2333 5
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHH
Q 007372 467 SQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW 546 (606)
Q Consensus 467 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 546 (606)
++.|++|...+| ++.... .+. .++.|+.++++.|. ++...+..... .|+|++|+++||.+. ......
T Consensus 429 ~~~L~tL~ahsN-~l~~fP--e~~-~l~qL~~lDlS~N~-L~~~~l~~~~p-------~p~LkyLdlSGN~~l-~~d~~~ 495 (1081)
T KOG0618|consen 429 LGRLHTLRAHSN-QLLSFP--ELA-QLPQLKVLDLSCNN-LSEVTLPEALP-------SPNLKYLDLSGNTRL-VFDHKT 495 (1081)
T ss_pred hhhhHHHhhcCC-ceeech--hhh-hcCcceEEecccch-hhhhhhhhhCC-------CcccceeeccCCccc-ccchhh
Confidence 789999988877 555433 442 56999999999886 88766665553 589999999999742 112222
Q ss_pred hhcCCCCCceEEEeecee
Q 007372 547 VKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 547 l~~~~~~~L~~L~l~~~~ 564 (606)
+. .+..+...+++-++
T Consensus 496 l~--~l~~l~~~~i~~~~ 511 (1081)
T KOG0618|consen 496 LK--VLKSLSQMDITLNN 511 (1081)
T ss_pred hH--HhhhhhheecccCC
Confidence 32 34566666766663
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=4.3e-17 Score=158.36 Aligned_cols=154 Identities=19% Similarity=0.138 Sum_probs=69.5
Q ss_pred CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCC
Q 007372 386 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGT 465 (606)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 465 (606)
.+.+|..+|++.+ .+... .+.+..+++|+.|+|++|.|+...+..- ...+|++|+++.|. ++.. ...++
T Consensus 220 ~l~NL~dvDlS~N-~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~~~~--~W~~lEtLNlSrNQ-Lt~L-P~avc----- 288 (1255)
T KOG0444|consen 220 DLHNLRDVDLSEN-NLPIV-PECLYKLRNLRRLNLSGNKITELNMTEG--EWENLETLNLSRNQ-LTVL-PDAVC----- 288 (1255)
T ss_pred hhhhhhhcccccc-CCCcc-hHHHhhhhhhheeccCcCceeeeeccHH--HHhhhhhhccccch-hccc-hHHHh-----
Confidence 3455666666554 33321 2334455666666666665554332211 12456666666655 2211 11122
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHH
Q 007372 466 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 545 (606)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 545 (606)
.++.|+.|.+.++ .++-.|+..-...+.+|+++...+|. +. ...+.+. .|+.|++|.++.|..||-...-
T Consensus 289 KL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-LE-lVPEglc-------RC~kL~kL~L~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 289 KLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-LE-LVPEGLC-------RCVKLQKLKLDHNRLITLPEAI 358 (1255)
T ss_pred hhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-cc-cCchhhh-------hhHHHHHhcccccceeechhhh
Confidence 3455666655554 44333222211123455555555543 11 1123333 3556666666655444331111
Q ss_pred HhhcCCCCCceEEEeecee
Q 007372 546 WVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 546 ~l~~~~~~~L~~L~l~~~~ 564 (606)
. -+|.|+.||++.|+
T Consensus 359 H----lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 359 H----LLPDLKVLDLRENP 373 (1255)
T ss_pred h----hcCCcceeeccCCc
Confidence 1 13456666666655
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.53 E-value=9.9e-14 Score=126.30 Aligned_cols=252 Identities=18% Similarity=0.179 Sum_probs=146.7
Q ss_pred HHHhcCCCccEEEcCCCCCCCHHHHHHHH---HcCCCCcEEEEcCCC--CCCHH---H---HHHHHcCCCCccEEEccCC
Q 007372 305 LLSEGCKGLESVRLGGFSKVSDAGFAAIL---LSCHSLKKFEVRSAS--FLSDL---A---FHDLTGVPCALVEVRLLWC 373 (606)
Q Consensus 305 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~~~---~---~~~l~~~~~~L~~L~l~~~ 373 (606)
........++.++++|+ .+..+....+. ..-++|+..+++.-. ...+. . +......+|+|+.|+|+++
T Consensus 24 ~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 33445678999999998 56655544443 344566666655421 01111 1 2223345678888888877
Q ss_pred CCCCHHHHHHh----cCCCCCcEEEccCCCCCChHHHHcc-------------cCCCCCCEEEccCCCCChHHHHH---H
Q 007372 374 RLITSETVKKL----ASSRNLEVLDLGGCKSIADTCLRSI-------------SCLRKLTALNLTGADITDSGLSI---L 433 (606)
Q Consensus 374 ~~l~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~i~~~~~~~---l 433 (606)
. +...+++.+ .++..|++|.|.+| .++..+-..+ +.-++||.+...+|.+.+.+... .
T Consensus 103 A-~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 103 A-FGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred c-cCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 6 555444443 36778888888777 5554433221 24567777777777665544433 3
Q ss_pred HhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHc---CCCCcEEEecCCCCCCHH
Q 007372 434 AQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDA 510 (606)
Q Consensus 434 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~ 510 (606)
.+..|.|+.+.+..|. +...++..+..+ ...|++|+.||+++| .++..+-..+++. +++|++|++++|- +.+.
T Consensus 181 ~~~~~~leevr~~qN~-I~~eG~~al~ea-l~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcl-l~~~ 256 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNG-IRPEGVTALAEA-LEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCL-LENE 256 (382)
T ss_pred HHhccccceEEEeccc-ccCchhHHHHHH-HHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccc-cccc
Confidence 4456777777777765 444444222211 125777777777777 5555555555443 3667777777775 6655
Q ss_pred HHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhh--cCCCCCceEEEeeceecc
Q 007372 511 SVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 511 ~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~--~~~~~~L~~L~l~~~~~~ 566 (606)
+..++...+.. ..|+|+.|.+.+| .++..+...+. .+..|.|+.|++++|++.
T Consensus 257 Ga~a~~~al~~--~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 257 GAIAFVDALKE--SAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cHHHHHHHHhc--cCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 54444432221 4577777777777 46665544332 234677777777777764
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.48 E-value=3.6e-13 Score=122.70 Aligned_cols=258 Identities=21% Similarity=0.225 Sum_probs=181.3
Q ss_pred hccCCCCccEEEeccccccCCCCccccChHHHHHHHhcC---CCccEEEcCCCC--CCCHHH------HHHHHHcCCCCc
Q 007372 272 SLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGC---KGLESVRLGGFS--KVSDAG------FAAILLSCHSLK 340 (606)
Q Consensus 272 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~---~~L~~L~l~~~~--~~~~~~------~~~~~~~~~~L~ 340 (606)
.+.....+++++++++. +.......++..+ ++|+..+++... ...++. +...+..+|+|+
T Consensus 25 ~~~~~~s~~~l~lsgnt---------~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNT---------FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HhcccCceEEEeccCCc---------hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 34578899999999853 6666666665444 566666666531 111222 223345678999
Q ss_pred EEEEcCCCCCC--HHHHHHHHcCCCCccEEEccCCCCCCHHHHHH-------------hcCCCCCcEEEccCCCCCChHH
Q 007372 341 KFEVRSASFLS--DLAFHDLTGVPCALVEVRLLWCRLITSETVKK-------------LASSRNLEVLDLGGCKSIADTC 405 (606)
Q Consensus 341 ~L~l~~~~~~~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~~ 405 (606)
+++++.+..=+ ...+..+.+.+..|++|++.+|. +...+-.. .++-++|+++..+.| .+.+.+
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~g 173 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGG 173 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cccccc
Confidence 99999885322 23467777889999999999998 55544433 224689999999887 555554
Q ss_pred HH----cccCCCCCCEEEccCCCCChHHHHHHH---hcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCC
Q 007372 406 LR----SISCLRKLTALNLTGADITDSGLSILA---QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 478 (606)
Q Consensus 406 ~~----~l~~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 478 (606)
.. .+...+.|+.+.+..|.|...++..+. ..||+|+.|++.+|. ++..+-..++. ..+.+++|+.|++++|
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Lak-aL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAK-ALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHH-Hhcccchheeeccccc
Confidence 33 334678999999999988777664433 379999999999998 66655554442 1146789999999999
Q ss_pred CCCCHHHHHHHH----HcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCC--CHHHHHHhh
Q 007372 479 PGISDDGILTIA----AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGL--SVDSLRWVK 548 (606)
Q Consensus 479 ~~l~~~~~~~l~----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~l~ 548 (606)
.+.+.|...+. +..|+|++|.+.+|. |+..+...+..+.. .-|.|++|++++|. + .+.++..+.
T Consensus 252 -ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~---ek~dL~kLnLngN~-l~e~de~i~ei~ 321 (382)
T KOG1909|consen 252 -LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMA---EKPDLEKLNLNGNR-LGEKDEGIDEIA 321 (382)
T ss_pred -ccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHh---cchhhHHhcCCccc-ccccchhHHHHH
Confidence 77776655544 446899999999998 88877766666544 46889999999994 6 556666554
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=2.2e-13 Score=154.28 Aligned_cols=287 Identities=18% Similarity=0.212 Sum_probs=185.6
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
.++|+.|++..+.+.. ++.-+ ...+|++|++.++... .+ ...+..+++|+.|+++++.. ...
T Consensus 588 p~~Lr~L~~~~~~l~~--lP~~f-~~~~L~~L~L~~s~l~------~L----~~~~~~l~~Lk~L~Ls~~~~-----l~~ 649 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRC--MPSNF-RPENLVKLQMQGSKLE------KL----WDGVHSLTGLRNIDLRGSKN-----LKE 649 (1153)
T ss_pred CcccEEEEecCCCCCC--CCCcC-CccCCcEEECcCcccc------cc----ccccccCCCCCEEECCCCCC-----cCc
Confidence 3568999888765443 22222 2578999999986431 11 12345788999999987632 111
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
+.+ + ..+++|+.|++++|..+.. +...+..+++|+.|++++|..+..... ...+++|+.|.+++|..+.
T Consensus 650 ip~-----l-s~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~---~i~l~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 650 IPD-----L-SMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSRLK 718 (1153)
T ss_pred CCc-----c-ccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCC---cCCCCCCCEEeCCCCCCcc
Confidence 221 1 2578999999999865432 333455789999999999865443211 1157899999999987543
Q ss_pred HHHHHHhc-CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCC---ChH--HH-HHHHhcCCCccEEEccCCCC
Q 007372 378 SETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI---TDS--GL-SILAQGNLPIMNLCLRGCKR 450 (606)
Q Consensus 378 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i---~~~--~~-~~l~~~~~~L~~L~l~~~~~ 450 (606)
. +. ..++|+.|+++++ .+.. ++....+++|+.|.+.++.. ... .+ ......+++|+.|++++|..
T Consensus 719 ~-----~p~~~~nL~~L~L~~n-~i~~--lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 719 S-----FPDISTNISWLDLDET-AIEE--FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred c-----cccccCCcCeeecCCC-cccc--ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 2 22 2468999999887 4443 22222577888888876421 110 00 01122357999999999975
Q ss_pred CCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCE
Q 007372 451 VTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRR 530 (606)
Q Consensus 451 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~ 530 (606)
+.... ..+. .+++|+.|++++|..+..... . ..+++|+.|++++|..+.. ++. ..++|++
T Consensus 791 l~~lP-~si~-----~L~~L~~L~Ls~C~~L~~LP~-~--~~L~sL~~L~Ls~c~~L~~-----~p~------~~~nL~~ 850 (1153)
T PLN03210 791 LVELP-SSIQ-----NLHKLEHLEIENCINLETLPT-G--INLESLESLDLSGCSRLRT-----FPD------ISTNISD 850 (1153)
T ss_pred ccccC-hhhh-----CCCCCCEEECCCCCCcCeeCC-C--CCccccCEEECCCCCcccc-----ccc------cccccCE
Confidence 44321 2233 689999999999977654211 1 1468999999999986542 222 3468999
Q ss_pred EeccCCCCCCHHHHHHhhcCCCCCceEEEeeceec
Q 007372 531 LDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRL 565 (606)
Q Consensus 531 L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~ 565 (606)
|+++++ .++..+. .+ ..+++|+.|++++|+.
T Consensus 851 L~Ls~n-~i~~iP~-si--~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 851 LNLSRT-GIEEVPW-WI--EKFSNLSFLDMNGCNN 881 (1153)
T ss_pred eECCCC-CCccChH-HH--hcCCCCCEEECCCCCC
Confidence 999998 5765433 22 3589999999999763
No 19
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.43 E-value=7.5e-13 Score=138.30 Aligned_cols=273 Identities=26% Similarity=0.416 Sum_probs=147.6
Q ss_pred CCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhcc-CCCCccEEEeccccccCCCCccccChHHHHHHH
Q 007372 229 DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLS 307 (606)
Q Consensus 229 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 307 (606)
..........+...++.|+.+.+.+| ..+++.++..+. .+++|++|++++|.. ...........+.
T Consensus 173 ~~~~~~~~~~l~~~~~~L~~l~l~~~--------~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~ 239 (482)
T KOG1947|consen 173 SLLLDKILLRLLSSCPLLKRLSLSGC--------SKITDDSLDALALKCPNLEELDLSGCCL-----LITLSPLLLLLLL 239 (482)
T ss_pred ccccHHHHHHHHhhCchhhHhhhccc--------ccCChhhHHHHHhhCchhheecccCccc-----ccccchhHhhhhh
Confidence 33444445555555677777777766 334444333333 666777777765210 0011111223345
Q ss_pred hcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhc-C
Q 007372 308 EGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-S 386 (606)
Q Consensus 308 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~-~ 386 (606)
..+++|+.|+++++..+++.++..+...|++|+.|.+.+|..+++.++..+...+++|++|++++|..+++.++..+. +
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 556666677766664466666666666666666666666665666666666666666666666666655555554443 3
Q ss_pred CCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCC-CCC-hHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcC
Q 007372 387 SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DIT-DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG 464 (606)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 464 (606)
+++|+.|.+..+.. ++.++.+.+.++ ... +.........++.++.+.+..|. .++.+.
T Consensus 320 c~~l~~l~~~~~~~-----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~-------- 379 (482)
T KOG1947|consen 320 CPNLRELKLLSLNG-----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL-------- 379 (482)
T ss_pred CcchhhhhhhhcCC-----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch--------
Confidence 55555554433211 333333333332 122 23333344445555555555554 333332
Q ss_pred CCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHH
Q 007372 465 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 544 (606)
Q Consensus 465 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 544 (606)
.+.+.+|+.++ ..+......+..++.|.++.|..+++..+..... .+.+++.+++.+|+.++....
T Consensus 380 -------~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~------~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 380 -------ELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLAD------SCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred -------HHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhh------hhhccccCCccCcccccchhh
Confidence 23344555454 4444443344447777777777777777766664 366777777777776666665
Q ss_pred HHhh
Q 007372 545 RWVK 548 (606)
Q Consensus 545 ~~l~ 548 (606)
..+.
T Consensus 446 ~~~~ 449 (482)
T KOG1947|consen 446 EGFA 449 (482)
T ss_pred hhhh
Confidence 5443
No 20
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.42 E-value=6.6e-13 Score=138.71 Aligned_cols=258 Identities=29% Similarity=0.398 Sum_probs=170.0
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCC-CCC--CHHHHHHHHcCCCCccEEEccCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSA-SFL--SDLAFHDLTGVPCALVEVRLLWCR 374 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~--~~~~~~~l~~~~~~L~~L~l~~~~ 374 (606)
........+...++.|+.+.+.+|..+++.++..+...+++|+.|+++++ ... .......+...+++|+.|++++|.
T Consensus 175 ~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 175 LLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred ccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 44444555555577777777777777776666666777777777777662 222 222233455667777777777777
Q ss_pred CCCHHHHHHhcC-CCCCcEEEccCCCCCChHHHHccc-CCCCCCEEEccCC-CCChHHHHHHHhcCCCccEEEccCC---
Q 007372 375 LITSETVKKLAS-SRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGC--- 448 (606)
Q Consensus 375 ~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~--- 448 (606)
.+++.++..+.. |++|+.|.+..|..+++.++..+. .++.|++|++++| .+++.++..+..+|++|+.|.+..+
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c 334 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGC 334 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCC
Confidence 677777777764 777888877777557777776664 5777888888877 5667777777777777776655443
Q ss_pred CCCCHHHHHHHHhhcCCCC-CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCC
Q 007372 449 KRVTDKGISHLLCVGGTIS-QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQ 527 (606)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 527 (606)
..+++..+.... ... ..+..+.+.+|+.+++..+.... .......+.+.+|+.++ ..+..... .+..
T Consensus 335 ~~l~~~~l~~~~----~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~------~~~~ 402 (482)
T KOG1947|consen 335 PSLTDLSLSGLL----TLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLC------RSDS 402 (482)
T ss_pred ccHHHHHHHHhh----ccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhc------cCCc
Confidence 346665555544 222 25666666666666665555543 21222256667777776 66665555 4555
Q ss_pred CCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 528 LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 528 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
++.|+++.|..++...+..... .+..++.+++.+++....
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~-~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLAD-SCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhh-hhhccccCCccCcccccc
Confidence 8999999998888888877652 277899999999886655
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=6.3e-15 Score=136.08 Aligned_cols=199 Identities=18% Similarity=0.075 Sum_probs=106.6
Q ss_pred CCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhhcCCcceEeccCCCCCcH--H-------------
Q 007372 42 PSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSY--Q------------- 106 (606)
Q Consensus 42 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~~~~L~~L~l~~~~~~~~--~------------- 106 (606)
.-+..|++.++...+ ++.......+++.++.+++++...+-.....++++.++++++..... .
T Consensus 68 ~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred cceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 345566666665443 33333446677777777777766555555556666666665432110 0
Q ss_pred -----HHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEE
Q 007372 107 -----ILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSL 181 (606)
Q Consensus 107 -----~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L 181 (606)
.++.-...|..|..+++.++.. . ++.+-.-+++.|++|+...+. .+..++.++.+ .+|..|
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l-----~--~l~~~~i~m~~L~~ld~~~N~--L~tlP~~lg~l-----~~L~~L 211 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKL-----K--ALPENHIAMKRLKHLDCNSNL--LETLPPELGGL-----ESLELL 211 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccch-----h--hCCHHHHHHHHHHhcccchhh--hhcCChhhcch-----hhhHHH
Confidence 0111111233333444432211 0 111112235667777766544 33344444444 455556
Q ss_pred eecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCccc
Q 007372 182 KLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLA 261 (606)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 261 (606)
++++.....++ .|..|..|++|+++.+.+.- ...++.++++++..|+++++..
T Consensus 212 yL~~Nki~~lP---------------------ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNkl----- 264 (565)
T KOG0472|consen 212 YLRRNKIRFLP---------------------EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKL----- 264 (565)
T ss_pred HhhhcccccCC---------------------CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeecccccc-----
Confidence 66655443333 33558888898888877764 4445667788888999988643
Q ss_pred ccccChhHHhhccCCCCccEEEecccc
Q 007372 262 RLDLTSSGLQSLGSCHHLTGLSLTRCR 288 (606)
Q Consensus 262 ~~~~~~~~~~~l~~~~~L~~L~l~~~~ 288 (606)
..++++ +..+++|..|++++..
T Consensus 265 -ke~Pde----~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 265 -KEVPDE----ICLLRSLERLDLSNND 286 (565)
T ss_pred -ccCchH----HHHhhhhhhhcccCCc
Confidence 223332 3345677888887654
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.17 E-value=5.5e-11 Score=125.17 Aligned_cols=171 Identities=19% Similarity=0.194 Sum_probs=80.4
Q ss_pred CCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCcccc
Q 007372 219 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 298 (606)
Q Consensus 219 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 298 (606)
++|+.|.+..+.++. + ....++|++|++++|... .++. ..++|++|++.++. +
T Consensus 222 ~~L~~L~L~~N~Lt~--L---P~lp~~Lk~LdLs~N~Lt------sLP~-------lp~sL~~L~Ls~N~---------L 274 (788)
T PRK15387 222 AHITTLVIPDNNLTS--L---PALPPELRTLEVSGNQLT------SLPV-------LPPGLLELSIFSNP---------L 274 (788)
T ss_pred cCCCEEEccCCcCCC--C---CCCCCCCcEEEecCCccC------cccC-------cccccceeeccCCc---------h
Confidence 467777777666553 1 123467777777775321 1110 12466777766542 1
Q ss_pred ChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 007372 299 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 378 (606)
Q Consensus 299 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 378 (606)
..+.....+|+.|+++++ .++. +. ...++|+.|+++++.. . .+.....+|+.|++++|. ++.
T Consensus 275 -----~~Lp~lp~~L~~L~Ls~N-~Lt~--LP---~~p~~L~~LdLS~N~L-~-----~Lp~lp~~L~~L~Ls~N~-L~~ 336 (788)
T PRK15387 275 -----THLPALPSGLCKLWIFGN-QLTS--LP---VLPPGLQELSVSDNQL-A-----SLPALPSELCKLWAYNNQ-LTS 336 (788)
T ss_pred -----hhhhhchhhcCEEECcCC-cccc--cc---ccccccceeECCCCcc-c-----cCCCCcccccccccccCc-ccc
Confidence 112222345666776666 3332 11 1235666666666531 1 111122355556665554 221
Q ss_pred HHHHHhcCC-CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCC
Q 007372 379 ETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 449 (606)
Q Consensus 379 ~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 449 (606)
+..+ ++|+.|++++| .++.. ..+ .++|+.|++++|.++.. .. ..++|+.|++++|.
T Consensus 337 -----LP~lp~~Lq~LdLS~N-~Ls~L--P~l--p~~L~~L~Ls~N~L~~L--P~---l~~~L~~LdLs~N~ 393 (788)
T PRK15387 337 -----LPTLPSGLQELSVSDN-QLASL--PTL--PSELYKLWAYNNRLTSL--PA---LPSGLKELIVSGNR 393 (788)
T ss_pred -----ccccccccceEecCCC-ccCCC--CCC--CcccceehhhccccccC--cc---cccccceEEecCCc
Confidence 1111 35666666655 44321 111 23455555655554421 11 12355666665554
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=9.9e-12 Score=116.68 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=43.9
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 007372 309 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 374 (606)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 374 (606)
.+.+|+.+.+.++ .+.+.+.....+.||+++.|+++.+-......+..+.+.+|+|+.|+++.+.
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 3456777777776 4554444345567888888888877655566677777777777777777654
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.6e-11 Score=113.97 Aligned_cols=214 Identities=17% Similarity=0.134 Sum_probs=118.0
Q ss_pred CCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHH
Q 007372 275 SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLA 354 (606)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 354 (606)
++.+|+++.+..++ +...+.....+.|++++.|+++.+--.....+..++..+|+|+.|.++.+.......
T Consensus 119 n~kkL~~IsLdn~~---------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYR---------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred hHHhhhheeecCcc---------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 67888888888875 555555567778899999999887444556677788888999999988764321110
Q ss_pred HHHHHcCCCCccEEEccCCCCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHcc--cCCCCCCEEEccCCCCChHHHH
Q 007372 355 FHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSI--SCLRKLTALNLTGADITDSGLS 431 (606)
Q Consensus 355 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~ 431 (606)
.......+.|+.|.++.|. ++-..+..+. .+|+|+.|++..+..+. .... .-+..|+.|+|++|++-+....
T Consensus 190 -s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~---~~~~~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 190 -SNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIIL---IKATSTKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred -ccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccc---eecchhhhhhHHhhccccCCcccccccc
Confidence 0000134667777777776 4444444333 56777777776652111 1111 1234566666766654443322
Q ss_pred HHHhcCCCccEEEccCCCCCCHHHHHHHHh-hcCCCCCCCCEEecCCCCCCCHH-HHHHHHHcCCCCcEEEecCCC
Q 007372 432 ILAQGNLPIMNLCLRGCKRVTDKGISHLLC-VGGTISQSLTTLDLGYMPGISDD-GILTIAAAGIGIIDLCVRSCF 505 (606)
Q Consensus 432 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~ 505 (606)
.....+|.|..|+++.|. +++........ ......++|++|++..| ++.+. .+..+ ..+++|+.|.+..+.
T Consensus 265 ~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l-~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHL-RTLENLKHLRITLNY 337 (505)
T ss_pred cccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccC-ccccccccchh-hccchhhhhhccccc
Confidence 223346666666666654 32222111100 01134566666666665 33321 12222 234566666655554
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.08 E-value=7.1e-12 Score=116.20 Aligned_cols=195 Identities=22% Similarity=0.082 Sum_probs=109.9
Q ss_pred CCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhhcCCcceEeccCCCCCcHHHHHHHhhcCCCccee
Q 007372 42 PSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVL 121 (606)
Q Consensus 42 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L 121 (606)
+++..++.+++.... ++.-..++-.++.++..+|.+...+-..+.+.++..+++.++. +.. ..+... .++.|+++
T Consensus 114 ~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~-l~~~~i-~m~~L~~l 188 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKA-LPENHI-AMKRLKHL 188 (565)
T ss_pred hhhhhhhccccceee--cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhh-CCHHHH-HHHHHHhc
Confidence 344555555544322 2222223556666666666666655555555667777776653 221 111221 36778888
Q ss_pred eeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcc
Q 007372 122 MLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRN 201 (606)
Q Consensus 122 ~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 201 (606)
+...+... .+..-++.+.+|+.|++..+. ..+.+ .| ..|..|+.+++.....+.++.-.
T Consensus 189 d~~~N~L~-------tlP~~lg~l~~L~~LyL~~Nk--i~~lP-ef-----~gcs~L~Elh~g~N~i~~lpae~------ 247 (565)
T KOG0472|consen 189 DCNSNLLE-------TLPPELGGLESLELLYLRRNK--IRFLP-EF-----PGCSLLKELHVGENQIEMLPAEH------ 247 (565)
T ss_pred ccchhhhh-------cCChhhcchhhhHHHHhhhcc--cccCC-CC-----CccHHHHHHHhcccHHHhhHHHH------
Confidence 87544221 112444566677777777543 22222 22 23567777777766555554442
Q ss_pred cccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccE
Q 007372 202 LMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTG 281 (606)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 281 (606)
..+++++..|++..+.+.. ....++ -+++|++|+++++.... + ...++++ +|+.
T Consensus 248 -------------~~~L~~l~vLDLRdNklke-~Pde~c-lLrsL~rLDlSNN~is~------L----p~sLgnl-hL~~ 301 (565)
T KOG0472|consen 248 -------------LKHLNSLLVLDLRDNKLKE-VPDEIC-LLRSLERLDLSNNDISS------L----PYSLGNL-HLKF 301 (565)
T ss_pred -------------hcccccceeeecccccccc-CchHHH-HhhhhhhhcccCCcccc------C----Ccccccc-eeee
Confidence 2357888899998888776 333343 36889999999864321 1 1235566 7888
Q ss_pred EEecccc
Q 007372 282 LSLTRCR 288 (606)
Q Consensus 282 L~l~~~~ 288 (606)
|.+.|.+
T Consensus 302 L~leGNP 308 (565)
T KOG0472|consen 302 LALEGNP 308 (565)
T ss_pred hhhcCCc
Confidence 8887764
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.02 E-value=4.2e-10 Score=118.60 Aligned_cols=243 Identities=18% Similarity=0.145 Sum_probs=152.4
Q ss_pred cceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCC
Q 007372 176 STIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRP 255 (606)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 255 (606)
++|+.|.+.++....++.. +++|++|++++|.++. ++ ...++|+.|++.+|.
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l-----------------------p~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL-----------------------PPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP 273 (788)
T ss_pred cCCCEEEccCCcCCCCCCC-----------------------CCCCcEEEecCCccCc--cc---CcccccceeeccCCc
Confidence 4788888877655444333 6889999998887764 22 224788889888863
Q ss_pred CCCcccccccChhHHhhcc-CCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHH
Q 007372 256 NTEPLARLDLTSSGLQSLG-SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL 334 (606)
Q Consensus 256 ~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 334 (606)
. + .+. ..++|+.|+++++. ++. +....++|+.|+++++ .++. +..
T Consensus 274 L---------~-----~Lp~lp~~L~~L~Ls~N~---------Lt~-----LP~~p~~L~~LdLS~N-~L~~--Lp~--- 319 (788)
T PRK15387 274 L---------T-----HLPALPSGLCKLWIFGNQ---------LTS-----LPVLPPGLQELSVSDN-QLAS--LPA--- 319 (788)
T ss_pred h---------h-----hhhhchhhcCEEECcCCc---------ccc-----ccccccccceeECCCC-cccc--CCC---
Confidence 2 1 111 22568888887764 221 1223467899999887 4442 111
Q ss_pred cCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHcccCCC
Q 007372 335 SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLR 413 (606)
Q Consensus 335 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 413 (606)
...+|+.|.+.+|.. + .+....++|+.|++++|. ++. +. ..++|+.|++++| .++. +.. ..+
T Consensus 320 lp~~L~~L~Ls~N~L-~-----~LP~lp~~Lq~LdLS~N~-Ls~-----LP~lp~~L~~L~Ls~N-~L~~--LP~--l~~ 382 (788)
T PRK15387 320 LPSELCKLWAYNNQL-T-----SLPTLPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYNN-RLTS--LPA--LPS 382 (788)
T ss_pred CcccccccccccCcc-c-----cccccccccceEecCCCc-cCC-----CCCCCcccceehhhcc-cccc--Ccc--ccc
Confidence 234678888777542 1 122223588999998876 443 22 2357888888877 5553 222 235
Q ss_pred CCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcC
Q 007372 414 KLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG 493 (606)
Q Consensus 414 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 493 (606)
+|+.|++++|.++... ...++|+.|++++|. ++. + . ..+.+|+.|++++| +++.. ...+ ..+
T Consensus 383 ~L~~LdLs~N~Lt~LP-----~l~s~L~~LdLS~N~-Lss--I---P----~l~~~L~~L~Ls~N-qLt~L-P~sl-~~L 444 (788)
T PRK15387 383 GLKELIVSGNRLTSLP-----VLPSELKELMVSGNR-LTS--L---P----MLPSGLLSLSVYRN-QLTRL-PESL-IHL 444 (788)
T ss_pred ccceEEecCCcccCCC-----CcccCCCEEEccCCc-CCC--C---C----cchhhhhhhhhccC-ccccc-ChHH-hhc
Confidence 7899999998776421 123689999999987 442 1 1 12357888899887 66642 2223 356
Q ss_pred CCCcEEEecCCCCCCHHHHHHHH
Q 007372 494 IGIIDLCVRSCFYVTDASVEALA 516 (606)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~~~l~ 516 (606)
++|+.|++++|+ ++...+..+.
T Consensus 445 ~~L~~LdLs~N~-Ls~~~~~~L~ 466 (788)
T PRK15387 445 SSETTVNLEGNP-LSERTLQALR 466 (788)
T ss_pred cCCCeEECCCCC-CCchHHHHHH
Confidence 889999999987 7776666553
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.85 E-value=5.1e-10 Score=103.97 Aligned_cols=271 Identities=18% Similarity=0.138 Sum_probs=164.5
Q ss_pred hHHHHHHHhcCC-CccEEEcCCC--CCCCHHHHHHHHHcCCCCcEEEEcCCC--CCCHHHHHHHHcCCCCccEEEccCCC
Q 007372 300 DMGMFLLSEGCK-GLESVRLGGF--SKVSDAGFAAILLSCHSLKKFEVRSAS--FLSDLAFHDLTGVPCALVEVRLLWCR 374 (606)
Q Consensus 300 ~~~l~~l~~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~ 374 (606)
..++..+...+| .-..+++..+ ..+.+..|. .+++|+.|+++++. .+...++ +.+++|.+|.+.++.
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~----~l~~LRrLdLS~N~Is~I~p~AF----~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAFK----TLHRLRRLDLSKNNISFIAPDAF----KGLASLLSLVLYGNN 126 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhcc----chhhhceecccccchhhcChHhh----hhhHhhhHHHhhcCC
Confidence 334445555554 5566666655 334444443 57899999998864 2233333 345677777777755
Q ss_pred CCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHH
Q 007372 375 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 454 (606)
Q Consensus 375 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 454 (606)
++++..-..+.++..|+.|.+.-+ ++.-.--..+..+++|..|.+..|.+....-. -.+....++.+.+..++.+.+.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~-tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKG-TFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccc-cccchhccchHhhhcCcccccc
Confidence 588777777888888888888665 55555556677788888888887754322111 1223567777877766633322
Q ss_pred HHHHHHh---------h-------------------cCCCCCCCCEE--ec-CCCCCCCHHHHHHHHHcCCCCcEEEecC
Q 007372 455 GISHLLC---------V-------------------GGTISQSLTTL--DL-GYMPGISDDGILTIAAAGIGIIDLCVRS 503 (606)
Q Consensus 455 ~~~~l~~---------~-------------------~~~~~~~L~~L--~l-~~~~~l~~~~~~~l~~~~~~L~~L~l~~ 503 (606)
.+..++. + ..+...+++.+ .+ +.| .........-.+.+++|+.|++++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcChHHHHhhcccceEeccCC
Confidence 2221110 0 00001122222 11 122 222222333345679999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCce
Q 007372 504 CFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWL 583 (606)
Q Consensus 504 ~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 583 (606)
|. |+...-..+. ....+++|.+.+| .+....-..+. ++..|+.|++.+|+|+......+..+ ...-
T Consensus 284 N~-i~~i~~~aFe-------~~a~l~eL~L~~N-~l~~v~~~~f~--~ls~L~tL~L~~N~it~~~~~aF~~~---~~l~ 349 (498)
T KOG4237|consen 284 NK-ITRIEDGAFE-------GAAELQELYLTRN-KLEFVSSGMFQ--GLSGLKTLSLYDNQITTVAPGAFQTL---FSLS 349 (498)
T ss_pred Cc-cchhhhhhhc-------chhhhhhhhcCcc-hHHHHHHHhhh--ccccceeeeecCCeeEEEeccccccc---ceee
Confidence 97 7765544444 3667999999999 46665555554 67899999999999987744444333 2233
Q ss_pred EEeecccccccc
Q 007372 584 TFCLDGCEIGCH 595 (606)
Q Consensus 584 ~~~~~g~~~~~~ 595 (606)
++.+-+|+|.|+
T Consensus 350 ~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 350 TLNLLSNPFNCN 361 (498)
T ss_pred eeehccCcccCc
Confidence 488889999998
No 28
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.82 E-value=3.1e-09 Score=69.90 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=31.5
Q ss_pred CCCchhhhHHHHHHhcCchhhhhhHHhhhHHHHhhh
Q 007372 1 METVPSAVLNKEILGRLDIEALCSLACVNRALRFSV 36 (606)
Q Consensus 1 i~~LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~ 36 (606)
|.+||+|++. +||+||+.+|+.++++|||+|+.++
T Consensus 1 i~~LP~Eil~-~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILL-EIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHH-HHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 6789999999 6999999999999999999999988
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.76 E-value=3.4e-08 Score=87.38 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=82.9
Q ss_pred CCCCCCEEEccCCCCChH---HHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHH
Q 007372 411 CLRKLTALNLTGADITDS---GLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGIL 487 (606)
Q Consensus 411 ~~~~L~~L~l~~~~i~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 487 (606)
.-|.|+.+....|++.+. -.....+.-..|+.+.+..|. +...++..+..-....+.+|+.|+++.| .++-.+-.
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~ 232 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSR 232 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHH
Confidence 345666666666643322 222222222466666666665 5544444333111124677777777776 55555544
Q ss_pred HHHHcC---CCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCC----CCHHHHHHhhcCCCCCceEEEe
Q 007372 488 TIAAAG---IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG----LSVDSLRWVKRPSFRGLHWLGI 560 (606)
Q Consensus 488 ~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~----l~~~~~~~l~~~~~~~L~~L~l 560 (606)
.++..+ +.|++|.+..|- ++..+...+....... ..|+|..|...++.. |.+.....+...+.|-|..|.+
T Consensus 233 ~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~-~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ 310 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEK-FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLER 310 (388)
T ss_pred HHHHHhcccchhhhccccchh-hccccHHHHHHHhhhh-cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHH
Confidence 444332 567777777775 5544443333211000 246777777766632 2223344455567788888888
Q ss_pred eceeccCC
Q 007372 561 GQTRLASK 568 (606)
Q Consensus 561 ~~~~~~~~ 568 (606)
.||++...
T Consensus 311 ngNr~~E~ 318 (388)
T COG5238 311 NGNRIKEL 318 (388)
T ss_pred ccCcchhH
Confidence 88887655
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.76 E-value=4.9e-08 Score=102.83 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=51.1
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHcccCCCCC
Q 007372 337 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKL 415 (606)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 415 (606)
.+|++|++++...++..+...+...+|+|++|.+.+-....++ +..++ ++|+|..||++++ ++++. ..++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGT-NISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCC-CccCc--HHHhccccH
Confidence 4566666666555555555555555555555555553322222 22222 4555555555554 44432 344445555
Q ss_pred CEEEccCCCCCh-HHHHHHHhcCCCccEEEccCCC
Q 007372 416 TALNLTGADITD-SGLSILAQGNLPIMNLCLRGCK 449 (606)
Q Consensus 416 ~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~ 449 (606)
+.|.+.+-.+.. ..+..++. +++|+.||+|.-.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDK 231 (699)
T ss_pred HHHhccCCCCCchhhHHHHhc-ccCCCeeeccccc
Confidence 555554444333 22233332 4455555554433
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.75 E-value=3.3e-08 Score=104.12 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=119.5
Q ss_pred CCCccEEEccCCCCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
-.+|++|++++...+...-...++ -+|+|+.|.+++-.-..++.......+|+|+.|+++++++++.. -...+++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~---GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS---GISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH---HHhccccH
Confidence 379999999997655554555666 48999999998863334443444468999999999999888762 22347899
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHH-HHHHH---HHcCCCCcEEEecCCCCCCHHHHHHHH
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDD-GILTI---AAAGIGIIDLCVRSCFYVTDASVEALA 516 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~ 516 (606)
+.|.+.+-.--+...+..++ .+++|+.||+|.-....+. .+... ...+|.||.|+.|+.+ ++...++.+.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF-----~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll 271 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLF-----NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELL 271 (699)
T ss_pred HHHhccCCCCCchhhHHHHh-----cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHH
Confidence 99999887755556777788 7999999999987655544 22221 2347999999999998 9999998888
Q ss_pred hhCCCcccCCCCCEEeccCC
Q 007372 517 RKQPDQEKSKQLRRLDLCNC 536 (606)
Q Consensus 517 ~~~~~~~~~~~L~~L~l~~c 536 (606)
. ..|+|+.+.+-+|
T Consensus 272 ~------sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 272 N------SHPNLQQIAALDC 285 (699)
T ss_pred H------hCccHhhhhhhhh
Confidence 8 6788888877655
No 32
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.73 E-value=1.4e-07 Score=83.62 Aligned_cols=203 Identities=18% Similarity=0.122 Sum_probs=136.0
Q ss_pred HhcCCCCCcEEEccCCCCCChHHH----HcccCCCCCCEEEccCCCCChHH-------HHHHHh-----cCCCccEEEcc
Q 007372 383 KLASSRNLEVLDLGGCKSIADTCL----RSISCLRKLTALNLTGADITDSG-------LSILAQ-----GNLPIMNLCLR 446 (606)
Q Consensus 383 ~l~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~-------~~~l~~-----~~~~L~~L~l~ 446 (606)
.+..||.|+..+|+.+ .++.... ..++....|++|.+++|.+...+ +.+++. .-|.|++....
T Consensus 87 aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4557899999999987 5554333 33467788999999998654432 222222 46899999998
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHH----HcCCCCcEEEecCCCCCCHHHHHHHHhhCCCc
Q 007372 447 GCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA----AAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 522 (606)
Q Consensus 447 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 522 (606)
.|.... .+......+. ..-..|+.+.+..| +|...|+..+. ..|.+|+.|++..|. ++-.+-..++..++
T Consensus 166 rNRlen-gs~~~~a~~l-~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~-- 239 (388)
T COG5238 166 RNRLEN-GSKELSAALL-ESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALC-- 239 (388)
T ss_pred cchhcc-CcHHHHHHHH-HhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhc--
Confidence 887222 2222111111 22268999999998 88887776653 467999999999998 88777777777666
Q ss_pred ccCCCCCEEeccCCCCCCHHHHHHh----hcCCCCCceEEEeeceeccCCC--hhHHHHHh-hcCCceE-Eeeccccccc
Q 007372 523 EKSKQLRRLDLCNCIGLSVDSLRWV----KRPSFRGLHWLGIGQTRLASKG--NPVITEIH-NERPWLT-FCLDGCEIGC 594 (606)
Q Consensus 523 ~~~~~L~~L~l~~c~~l~~~~~~~l----~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~-~~~~~l~-~~~~g~~~~~ 594 (606)
.++.|+.|.+.+| .++..+...+ ..-..|+|..|....|.+.... ..++.++. ...|.+. +..+||.+.=
T Consensus 240 -~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 240 -EWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred -ccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 7899999999999 5766555443 2245799999999988765441 12233332 2345555 7777776543
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.69 E-value=7.9e-08 Score=102.34 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=49.1
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
.++|+.|+++++.++. ....+ .++|+.|++++|.. ..++.. + .++|+.|+++++.. ..
T Consensus 198 p~~L~~L~Ls~N~Lts-LP~~l---~~nL~~L~Ls~N~L------tsLP~~----l--~~~L~~L~Ls~N~L------~~ 255 (754)
T PRK15370 198 PEQITTLILDNNELKS-LPENL---QGNIKTLYANSNQL------TSIPAT----L--PDTIQEMELSINRI------TE 255 (754)
T ss_pred ccCCcEEEecCCCCCc-CChhh---ccCCCEEECCCCcc------ccCChh----h--hccccEEECcCCcc------Cc
Confidence 4567888888777664 11112 35788888877633 112211 1 13677777776542 11
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSA 347 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 347 (606)
+... ...+|+.|+++++ .++. +.. .-+++|+.|++++|
T Consensus 256 LP~~-------l~s~L~~L~Ls~N-~L~~--LP~--~l~~sL~~L~Ls~N 293 (754)
T PRK15370 256 LPER-------LPSALQSLDLFHN-KISC--LPE--NLPEELRYLSVYDN 293 (754)
T ss_pred CChh-------HhCCCCEEECcCC-ccCc--ccc--ccCCCCcEEECCCC
Confidence 1110 1136777777655 3331 111 01245666666665
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.64 E-value=2.4e-08 Score=106.16 Aligned_cols=251 Identities=17% Similarity=0.131 Sum_probs=154.3
Q ss_pred CCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCC
Q 007372 244 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK 323 (606)
Q Consensus 244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 323 (606)
.+...|++++... ..++. .+ .++|+.|+++++.. ..+.. ..+++|+.|+++++ .
T Consensus 178 ~~~~~L~L~~~~L------tsLP~----~I--p~~L~~L~Ls~N~L------tsLP~-------~l~~nL~~L~Ls~N-~ 231 (754)
T PRK15370 178 NNKTELRLKILGL------TTIPA----CI--PEQITTLILDNNEL------KSLPE-------NLQGNIKTLYANSN-Q 231 (754)
T ss_pred cCceEEEeCCCCc------CcCCc----cc--ccCCcEEEecCCCC------CcCCh-------hhccCCCEEECCCC-c
Confidence 5677888887532 11221 12 25799999988642 12211 12358999999988 4
Q ss_pred CCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCCh
Q 007372 324 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD 403 (606)
Q Consensus 324 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 403 (606)
++. +... ..++|+.|++++|... ... ..+ .++|+.|+++++. +... ...+ .++|+.|++++| .++.
T Consensus 232 Lts--LP~~--l~~~L~~L~Ls~N~L~-~LP-~~l---~s~L~~L~Ls~N~-L~~L-P~~l--~~sL~~L~Ls~N-~Lt~ 297 (754)
T PRK15370 232 LTS--IPAT--LPDTIQEMELSINRIT-ELP-ERL---PSALQSLDLFHNK-ISCL-PENL--PEELRYLSVYDN-SIRT 297 (754)
T ss_pred ccc--CChh--hhccccEEECcCCccC-cCC-hhH---hCCCCEEECcCCc-cCcc-cccc--CCCCcEEECCCC-cccc
Confidence 542 2211 1257999999987532 110 111 2589999998775 4421 1112 358999999998 5553
Q ss_pred HHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCH
Q 007372 404 TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 483 (606)
Q Consensus 404 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 483 (606)
.. ..+ .++|+.|++++|.++.... ...++|+.|++++|. ++.. .. ..+++|+.|++++| +++.
T Consensus 298 LP-~~l--p~sL~~L~Ls~N~Lt~LP~----~l~~sL~~L~Ls~N~-Lt~L--P~------~l~~sL~~L~Ls~N-~L~~ 360 (754)
T PRK15370 298 LP-AHL--PSGITHLNVQSNSLTALPE----TLPPGLKTLEAGENA-LTSL--PA------SLPPELQVLDVSKN-QITV 360 (754)
T ss_pred Cc-ccc--hhhHHHHHhcCCccccCCc----cccccceeccccCCc-cccC--Ch------hhcCcccEEECCCC-CCCc
Confidence 21 111 2468889999987764221 123689999999986 4431 11 12479999999998 6653
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHH--HHHHhhcCCCCCceEEEee
Q 007372 484 DGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD--SLRWVKRPSFRGLHWLGIG 561 (606)
Q Consensus 484 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~l~~~~~~~L~~L~l~ 561 (606)
.. ..+ .++|+.|++++|. ++... ..+. ++|+.|++++| .++.. .+..+. ..+|.+..|++.
T Consensus 361 LP-~~l---p~~L~~LdLs~N~-Lt~LP-~~l~---------~sL~~LdLs~N-~L~~LP~sl~~~~-~~~~~l~~L~L~ 423 (754)
T PRK15370 361 LP-ETL---PPTITTLDVSRNA-LTNLP-ENLP---------AALQIMQASRN-NLVRLPESLPHFR-GEGPQPTRIIVE 423 (754)
T ss_pred CC-hhh---cCCcCEEECCCCc-CCCCC-HhHH---------HHHHHHhhccC-CcccCchhHHHHh-hcCCCccEEEee
Confidence 21 122 2689999999997 65321 1222 26899999998 46542 223332 356889999999
Q ss_pred ceeccCC
Q 007372 562 QTRLASK 568 (606)
Q Consensus 562 ~~~~~~~ 568 (606)
+|++...
T Consensus 424 ~Npls~~ 430 (754)
T PRK15370 424 YNPFSER 430 (754)
T ss_pred CCCccHH
Confidence 9998754
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=9.3e-09 Score=92.19 Aligned_cols=135 Identities=21% Similarity=0.127 Sum_probs=94.1
Q ss_pred cccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHH
Q 007372 408 SISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGIL 487 (606)
Q Consensus 408 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 487 (606)
.+..+..|+.+++++|.|+...- -..-.|.++.|+++.|....-.. +. .+++|++|++++| .++...-+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDE--SvKL~Pkir~L~lS~N~i~~v~n---La-----~L~~L~~LDLS~N-~Ls~~~Gw 347 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDE--SVKLAPKLRRLILSQNRIRTVQN---LA-----ELPQLQLLDLSGN-LLAECVGW 347 (490)
T ss_pred ecchHhhhhhccccccchhhhhh--hhhhccceeEEeccccceeeehh---hh-----hcccceEeecccc-hhHhhhhh
Confidence 33467789999999998775322 22236899999999997333222 33 5789999999998 55543222
Q ss_pred HHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCH-HHHHHhhcCCCCCceEEEeeceecc
Q 007372 488 TIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV-DSLRWVKRPSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 488 ~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~~L~~L~l~~~~~~ 566 (606)
-..+-+.+.|.+++|. |.+ +..+. .+-+|..|++++|. |.. ..+..+ +++|.|++|.+.+||+.
T Consensus 348 --h~KLGNIKtL~La~N~-iE~--LSGL~-------KLYSLvnLDl~~N~-Ie~ldeV~~I--G~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 348 --HLKLGNIKTLKLAQNK-IET--LSGLR-------KLYSLVNLDLSSNQ-IEELDEVNHI--GNLPCLETLRLTGNPLA 412 (490)
T ss_pred --HhhhcCEeeeehhhhh-Hhh--hhhhH-------hhhhheeccccccc-hhhHHHhccc--ccccHHHHHhhcCCCcc
Confidence 2345789999999997 443 33333 36689999999994 544 233332 67999999999999986
Q ss_pred CC
Q 007372 567 SK 568 (606)
Q Consensus 567 ~~ 568 (606)
..
T Consensus 413 ~~ 414 (490)
T KOG1259|consen 413 GS 414 (490)
T ss_pred cc
Confidence 44
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.55 E-value=7.3e-09 Score=96.45 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=62.1
Q ss_pred CCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHH
Q 007372 465 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 544 (606)
Q Consensus 465 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 544 (606)
+.+++|+.|++++| .+++..-..+ ++...+++|.+..|. +....-..+. ++.+|+.|++++| +|+....
T Consensus 271 ~~L~~L~~lnlsnN-~i~~i~~~aF-e~~a~l~eL~L~~N~-l~~v~~~~f~-------~ls~L~tL~L~~N-~it~~~~ 339 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNN-KITRIEDGAF-EGAAELQELYLTRNK-LEFVSSGMFQ-------GLSGLKTLSLYDN-QITTVAP 339 (498)
T ss_pred hhcccceEeccCCC-ccchhhhhhh-cchhhhhhhhcCcch-HHHHHHHhhh-------ccccceeeeecCC-eeEEEec
Confidence 36778888888887 6654332222 345678888888776 4433322222 4677888888888 4776555
Q ss_pred HHhhcCCCCCceEEEeeceeccCC-ChhHHHHHhh
Q 007372 545 RWVKRPSFRGLHWLGIGQTRLASK-GNPVITEIHN 578 (606)
Q Consensus 545 ~~l~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 578 (606)
..|. ...+|.+|.+-+|+..-+ -...+.++.+
T Consensus 340 ~aF~--~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 340 GAFQ--TLFSLSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred cccc--ccceeeeeehccCcccCccchHHHHHHHh
Confidence 5554 355788888887776543 2344444433
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=5.7e-08 Score=83.55 Aligned_cols=79 Identities=28% Similarity=0.363 Sum_probs=18.2
Q ss_pred CccEEEccCCCCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccE
Q 007372 364 ALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 442 (606)
Q Consensus 364 ~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 442 (606)
++++|++.++. ++. +..++ .+.+|+.|++++| .++. ++.+..+++|+.|++++|.++..+- .+...+|+|++
T Consensus 20 ~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNN-QITK--LEGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S----TT----TT--EEE--SS---S-CH-HHHHH-TT--E
T ss_pred ccccccccccc-ccc--ccchhhhhcCCCEEECCCC-CCcc--ccCccChhhhhhcccCCCCCCcccc-chHHhCCcCCE
Confidence 44555555543 221 22333 3456666666665 4443 3344555666666666665554321 12223556666
Q ss_pred EEccCCC
Q 007372 443 LCLRGCK 449 (606)
Q Consensus 443 L~l~~~~ 449 (606)
|++++|.
T Consensus 93 L~L~~N~ 99 (175)
T PF14580_consen 93 LYLSNNK 99 (175)
T ss_dssp EE-TTS-
T ss_pred EECcCCc
Confidence 6666554
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1.6e-07 Score=84.44 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=33.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 007372 313 LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 374 (606)
Q Consensus 313 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 374 (606)
++-+.+.+|.--+...+..+...+..++.+++.++..-....+..+..++|.|+.|+++.+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 44455555522222334444555667777777666544445555555556666666665544
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=2.6e-08 Score=85.65 Aligned_cols=13 Identities=8% Similarity=-0.051 Sum_probs=3.8
Q ss_pred CCCCcEEEecCCC
Q 007372 493 GIGIIDLCVRSCF 505 (606)
Q Consensus 493 ~~~L~~L~l~~~~ 505 (606)
+|+|++|++++|.
T Consensus 87 lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 87 LPNLQELYLSNNK 99 (175)
T ss_dssp -TT--EEE-TTS-
T ss_pred CCcCCEEECcCCc
Confidence 3444444444443
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=7.7e-07 Score=75.72 Aligned_cols=87 Identities=23% Similarity=0.284 Sum_probs=59.6
Q ss_pred ccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhC
Q 007372 440 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ 519 (606)
Q Consensus 440 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 519 (606)
++.++-+++. +..+++..+. .+++++.|.+.+|..+.|.+++.+..-.++|+.|+|++|+.||+.++..+..
T Consensus 103 IeaVDAsds~-I~~eGle~L~-----~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-- 174 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEHLR-----DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-- 174 (221)
T ss_pred EEEEecCCch-HHHHHHHHHh-----ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH--
Confidence 4555666654 6677777666 5677777777777777777777776555777777777777777777777764
Q ss_pred CCcccCCCCCEEeccCCCCC
Q 007372 520 PDQEKSKQLRRLDLCNCIGL 539 (606)
Q Consensus 520 ~~~~~~~~L~~L~l~~c~~l 539 (606)
+++|+.|.+.+-+.+
T Consensus 175 -----lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 175 -----LKNLRRLHLYDLPYV 189 (221)
T ss_pred -----hhhhHHHHhcCchhh
Confidence 677777777655443
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1e-06 Score=79.32 Aligned_cols=188 Identities=15% Similarity=0.128 Sum_probs=125.1
Q ss_pred CCCccEEecccCCCCH-HHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhc-cCCCCccEEEeccccccCCCCc
Q 007372 218 SFNLRSLSLVLDVITD-ELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHNHQGTF 295 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~ 295 (606)
++.+++++|.+|.+++ +.+..+.+++|.|+.|+++.|+... .+..+ ....+|+.|.+.++.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----------~I~~lp~p~~nl~~lVLNgT~------- 132 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----------DIKSLPLPLKNLRVLVLNGTG------- 132 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----------ccccCcccccceEEEEEcCCC-------
Confidence 7889999999999987 5566777889999999999864321 13334 256799999998854
Q ss_pred cccChHHHHHHHhcCCCccEEEcCCCC----CCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEcc
Q 007372 296 KRVNDMGMFLLSEGCKGLESVRLGGFS----KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLL 371 (606)
Q Consensus 296 ~~~~~~~l~~l~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 371 (606)
+.......+...+|.++.|+++.++ .+.+..... ..+.+++|....|..........+...+|++..+.+.
T Consensus 133 --L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~ 207 (418)
T KOG2982|consen 133 --LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC 207 (418)
T ss_pred --CChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeee
Confidence 6777777777788888988887661 223333322 2345666666666544445555666667888887777
Q ss_pred CCCCCCHHH-HHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChH
Q 007372 372 WCRLITSET-VKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS 428 (606)
Q Consensus 372 ~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 428 (606)
.|+ +.... -+....+|.+-.|.|+.+.--+...+..+.+++.|+.|.+..+.+.+.
T Consensus 208 e~P-lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 208 EGP-LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cCc-ccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 776 33222 222234566667777666223345567777778888888777765543
No 42
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.25 E-value=3.7e-07 Score=60.45 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=29.2
Q ss_pred CCchhhhHHHHHHhcCchhhhhhHHhhhHHHHhhh
Q 007372 2 ETVPSAVLNKEILGRLDIEALCSLACVNRALRFSV 36 (606)
Q Consensus 2 ~~LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~ 36 (606)
.+||+|++. +||+||+..|++++++|||+|+.++
T Consensus 4 ~~LP~~il~-~Il~~l~~~~~~~l~~vsk~~~~~~ 37 (48)
T PF00646_consen 4 SDLPDEILQ-EILSYLDPKDLLRLSLVSKRWRSLV 37 (48)
T ss_dssp HHS-HHHHH-HHHHTS-HHHHHHHCTT-HHHHHHH
T ss_pred HHCCHHHHH-HHHHHCcHHHHHHHHHHhhHHHHHH
Confidence 479999999 6999999999999999999999887
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.25 E-value=2.2e-07 Score=83.51 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=113.9
Q ss_pred CCCccEEEccCCCCCCHHHHHHh-cCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 362 PCALVEVRLLWCRLITSETVKKL-ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
+.+|..+.++.|.. ..+..+ ..-|.|+.+.+.+. .+.+. +.+-....+.......-......+......+..|
T Consensus 213 f~~l~~~~~s~~~~---~~i~~~~~~kptl~t~~v~~s-~~~~~--~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 213 FRNLKTLKFSALST---ENIVDIELLKPTLQTICVHNT-TIQDV--PSLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred hhhhheeeeeccch---hheeceeecCchhheeeeecc-ccccc--ccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 45666666666531 111112 13467777776554 33321 2222222222222222111111111122235789
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCC
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 520 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 520 (606)
++++++.|. ++. +..-. +-.|.++.|++++| .+.. +..+ .++++|..|++++|. ++. +..+-.
T Consensus 287 telDLS~N~-I~~--iDESv----KL~Pkir~L~lS~N-~i~~--v~nL-a~L~~L~~LDLS~N~-Ls~--~~Gwh~--- 349 (490)
T KOG1259|consen 287 TELDLSGNL-ITQ--IDESV----KLAPKLRRLILSQN-RIRT--VQNL-AELPQLQLLDLSGNL-LAE--CVGWHL--- 349 (490)
T ss_pred hhccccccc-hhh--hhhhh----hhccceeEEecccc-ceee--ehhh-hhcccceEeecccch-hHh--hhhhHh---
Confidence 999999986 432 11112 34689999999998 5543 2334 467999999999997 544 333333
Q ss_pred CcccCCCCCEEeccCCCCCCH-HHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 521 DQEKSKQLRRLDLCNCIGLSV-DSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 521 ~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
.+-+++.|.+++|. +.+ .++. .+-+|..||+++|+|..- +.+..+. ..|-+. +.+.||+..-.
T Consensus 350 ---KLGNIKtL~La~N~-iE~LSGL~-----KLYSLvnLDl~~N~Ie~l--deV~~IG-~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 350 ---KLGNIKTLKLAQNK-IETLSGLR-----KLYSLVNLDLSSNQIEEL--DEVNHIG-NLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ---hhcCEeeeehhhhh-HhhhhhhH-----hhhhheeccccccchhhH--HHhcccc-cccHHHHHhhcCCCcccc
Confidence 46789999999994 433 2332 356899999999998754 5555553 445555 78888876543
No 44
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.24 E-value=1e-06 Score=56.19 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=30.7
Q ss_pred chhhhHHHHHHhcCchhhhhhHHhhhHHHHhhh
Q 007372 4 VPSAVLNKEILGRLDIEALCSLACVNRALRFSV 36 (606)
Q Consensus 4 LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~ 36 (606)
||+|++. .||.|++..|+.++++|||+|+.+.
T Consensus 1 lP~~ll~-~I~~~l~~~d~~~~~~vc~~~~~~~ 32 (41)
T smart00256 1 LPDEILE-EILSKLPPKDLLRLRKVSRRWRSLI 32 (41)
T ss_pred CCHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 7999999 6999999999999999999999887
No 45
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=1.1e-06 Score=74.74 Aligned_cols=85 Identities=26% Similarity=0.321 Sum_probs=50.5
Q ss_pred CCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCC
Q 007372 415 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 494 (606)
Q Consensus 415 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (606)
++.++-+++.|...|+..+.. ++.++.|.+.+|..+.+.++..+. ...++|+.|+|++|+.||+.|+..+. .++
T Consensus 103 IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~-~lk 176 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLL-KLK 176 (221)
T ss_pred EEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHH-Hhh
Confidence 344444555566666665543 566666666666666666666555 34566666666666666666666653 456
Q ss_pred CCcEEEecCCC
Q 007372 495 GIIDLCVRSCF 505 (606)
Q Consensus 495 ~L~~L~l~~~~ 505 (606)
+|+.|.|.+-+
T Consensus 177 nLr~L~l~~l~ 187 (221)
T KOG3864|consen 177 NLRRLHLYDLP 187 (221)
T ss_pred hhHHHHhcCch
Confidence 66666665443
No 46
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=98.14 E-value=7.2e-07 Score=90.01 Aligned_cols=346 Identities=22% Similarity=0.263 Sum_probs=172.6
Q ss_pred ccEEecccCCCCHHHHHHHHhh---CCCCCEEEcCCCCCCCcccccccChhHHhhcc----CC-CCccEEEeccccccCC
Q 007372 221 LRSLSLVLDVITDELLITITAS---LPFLVELDLEDRPNTEPLARLDLTSSGLQSLG----SC-HHLTGLSLTRCRHNHQ 292 (606)
Q Consensus 221 L~~L~l~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~ 292 (606)
+.++.+..+.+.+...+.+.+. .+.|..|+++++. +.+.+...+. .. +.++.|.+..|.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~---------l~~~g~~~l~~~l~~~~~~l~~L~l~~c~---- 155 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN---------LGDEGARLLCEGLRLPQCLLQTLELVSCS---- 155 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC---------CccHhHHHHHhhcccchHHHHHHHhhccc----
Confidence 6667777777776665555544 3677778888753 3445544443 22 456666666654
Q ss_pred CCccccChHHHHHHHhc---CCCccEEEcCCCCCCCHHHHHHHHH-------cCCCCcEEEEcCCCCCCHHH---HHHHH
Q 007372 293 GTFKRVNDMGMFLLSEG---CKGLESVRLGGFSKVSDAGFAAILL-------SCHSLKKFEVRSASFLSDLA---FHDLT 359 (606)
Q Consensus 293 ~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~---~~~l~ 359 (606)
++..+...++.. ...++.++++.+ .+...+...+.. ...++++|++.+|... ... +....
T Consensus 156 -----l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t-~~~c~~l~~~l 228 (478)
T KOG4308|consen 156 -----LTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCGVT-SSSCALLDEVL 228 (478)
T ss_pred -----ccccchHHHHHHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC-hHHHHHHHHHH
Confidence 444443333222 455666666665 332333322211 1234666666665422 222 22222
Q ss_pred cCCCC-ccEEEccCCCCCCHHHHHHhc----CC-CCCcEEEccCCCCCChHHHHc----ccCCCCCCEEEccCCCCChHH
Q 007372 360 GVPCA-LVEVRLLWCRLITSETVKKLA----SS-RNLEVLDLGGCKSIADTCLRS----ISCLRKLTALNLTGADITDSG 429 (606)
Q Consensus 360 ~~~~~-L~~L~l~~~~~l~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~i~~~~ 429 (606)
...+. +..+++..+. +.+.++..+. .. +.++.++++.| .+++.+... +..+++++.+.++.+.+++.+
T Consensus 229 ~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 229 ASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred hccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 23333 4445555554 4444444433 22 45566666666 454444322 234556666666666666655
Q ss_pred HHHHHh---cCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcC--C--CCcEEEec
Q 007372 430 LSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG--I--GIIDLCVR 502 (606)
Q Consensus 430 ~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~--~--~L~~L~l~ 502 (606)
...+.. ....+..+.+.++...+-.....+... ...-..+....++++ ...+.+...+.... | .+..+++.
T Consensus 307 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (478)
T KOG4308|consen 307 VELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEA-DAQRQLLSELGISGN-RVGEEGLALLVLAKSNPKSELLRLSLN 384 (478)
T ss_pred HHHHHHHhhhcccchhhhccccCccchhHHHHHHHH-HHHhhhhHHHHhhhc-cchHHHHHHHhhhhcccCcccchhhhh
Confidence 444333 223344444443332222111111100 001122223333333 44444443332221 3 35555555
Q ss_pred CCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhh--cCCCCCceEEEeeceeccCCChhHHHHHhhcC
Q 007372 503 SCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLASKGNPVITEIHNER 580 (606)
Q Consensus 503 ~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 580 (606)
.+. +.+.+...++.... ..+.++.++++.+....+.+..... ..+. .++.+.++.|+++..+.+....-....
T Consensus 385 ~~~-~~~~~~~~l~~~~~---~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 459 (478)
T KOG4308|consen 385 SQV-IEGRGALRLAAQLA---SNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQRALALN 459 (478)
T ss_pred ccc-cccHHHHHhhhhhh---hcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHHHHhcC
Confidence 555 55555555544333 6788999999888533333222221 1345 899999999998877555554444455
Q ss_pred CceE-Eeecccccccc
Q 007372 581 PWLT-FCLDGCEIGCH 595 (606)
Q Consensus 581 ~~l~-~~~~g~~~~~~ 595 (606)
+.+. +..++|.+++.
T Consensus 460 ~~~~~~~~~~~~~~~~ 475 (478)
T KOG4308|consen 460 PGILAIRLRGNVIGRA 475 (478)
T ss_pred CCcceeecccCccccc
Confidence 6555 88888877654
No 47
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=98.09 E-value=3.5e-07 Score=92.28 Aligned_cols=219 Identities=24% Similarity=0.261 Sum_probs=129.7
Q ss_pred ccEEEccCCCCCCHHHHHHhc----CCCCCcEEEccCCCCCChHHHHccc----CC-CCCCEEEccCCCCChHHHHHHHh
Q 007372 365 LVEVRLLWCRLITSETVKKLA----SSRNLEVLDLGGCKSIADTCLRSIS----CL-RKLTALNLTGADITDSGLSILAQ 435 (606)
Q Consensus 365 L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~i~~~~~~~l~~ 435 (606)
+..+.+.+|. +.+.+...+. ..++|+.|+++++ .+++.+...+. .. +.++.|++..|.+++.+...+..
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 4455555555 4444444333 4677777777776 66666655442 21 34566777777777666544433
Q ss_pred ---cCCCccEEEccCCCCCCHHHHHHHHhhcCC---CCCCCCEEecCCCCCCCHHHHHHHHHcC---CC-CcEEEecCCC
Q 007372 436 ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGT---ISQSLTTLDLGYMPGISDDGILTIAAAG---IG-IIDLCVRSCF 505 (606)
Q Consensus 436 ---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~-L~~L~l~~~~ 505 (606)
..+.++.++++.|. +...+...+..+... ...++++|.+.+| .+++.....+...+ +. ++++++..|.
T Consensus 167 ~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 35677777777776 334444333322222 4567888888888 66666555544333 33 5667887776
Q ss_pred CCCHHHHHHHHhhCCCcccC-CCCCEEeccCCCCCCHHHHHHhhc--CCCCCceEEEeeceeccCCCh-hHHHHHhhcCC
Q 007372 506 YVTDASVEALARKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKR--PSFRGLHWLGIGQTRLASKGN-PVITEIHNERP 581 (606)
Q Consensus 506 ~l~~~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~ 581 (606)
+.|.+++.+...+. .. +.+++++++.| .+++.+...+.. ..++.++.+.+..|++.+... ..+..+....+
T Consensus 245 -l~d~g~~~L~~~l~---~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~ 319 (478)
T KOG4308|consen 245 -LGDVGVEKLLPCLS---VLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTP 319 (478)
T ss_pred -cchHHHHHHHHHhc---ccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhccc
Confidence 77777777776544 33 46688888888 466655554431 357788888888888776622 33344545555
Q ss_pred ceEEeeccccc
Q 007372 582 WLTFCLDGCEI 592 (606)
Q Consensus 582 ~l~~~~~g~~~ 592 (606)
.....+.++-.
T Consensus 320 ~~~~~l~~~~~ 330 (478)
T KOG4308|consen 320 LLHLVLGGTGK 330 (478)
T ss_pred chhhhccccCc
Confidence 55555544433
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.77 E-value=6.5e-06 Score=57.73 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=33.6
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCC
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD 424 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 424 (606)
|+|++|++++|. ++......+.++++|+.|++++| .++......+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345555555553 44433344555666666666665 5555444555666666666666654
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.64 E-value=2.7e-05 Score=84.80 Aligned_cols=231 Identities=21% Similarity=0.219 Sum_probs=113.9
Q ss_pred CCCccEEecccCCC-CHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCcc
Q 007372 218 SFNLRSLSLVLDVI-TDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK 296 (606)
Q Consensus 218 ~~~L~~L~l~~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 296 (606)
++.|++|-+..+.. -......++..+|.|+.|++++|... ..+ ...++.+-+|++|+++++.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-----~~L----P~~I~~Li~LryL~L~~t~-------- 606 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-----SKL----PSSIGELVHLRYLDLSDTG-------- 606 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-----CcC----ChHHhhhhhhhcccccCCC--------
Confidence 55677776665431 11123344566788888888876332 112 2345666788888887754
Q ss_pred ccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCC-CCCHHHHHHHHcCCCCccEEEccCCCC
Q 007372 297 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRLLWCRL 375 (606)
Q Consensus 297 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~ 375 (606)
+. .+..-...+..|.+|++........ +..+...+++|++|.+.... ..+...+..+ ..+.+|+.+......
T Consensus 607 -I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s- 679 (889)
T KOG4658|consen 607 -IS--HLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISS- 679 (889)
T ss_pred -cc--ccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecch-
Confidence 22 2222223455777777775532221 13333456788888876653 2222223333 334444444443322
Q ss_pred CCHHHHHHhcCCCCCc----EEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHH-----hcCCCccEEEcc
Q 007372 376 ITSETVKKLASSRNLE----VLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA-----QGNLPIMNLCLR 446 (606)
Q Consensus 376 l~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~-----~~~~~L~~L~l~ 446 (606)
...+..+...+.|. .+.+.++. .......+..+.+|+.|.+..|.+++....... ..++++..+.+.
T Consensus 680 --~~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 680 --VLLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred --hHhHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh
Confidence 11122222222222 22221111 111123445677778888877766544321110 014455556666
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCH
Q 007372 447 GCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 483 (606)
Q Consensus 447 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 483 (606)
+|....+.....+ .++|+.|.+..|+.+.+
T Consensus 756 ~~~~~r~l~~~~f-------~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 756 NCHMLRDLTWLLF-------APHLTSLSLVSCRLLED 785 (889)
T ss_pred ccccccccchhhc-------cCcccEEEEeccccccc
Confidence 6654444333322 37777777777755543
No 50
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.60 E-value=1.2e-06 Score=72.18 Aligned_cols=153 Identities=22% Similarity=0.132 Sum_probs=84.2
Q ss_pred CCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhhcCCcceEeccCCCCCcHHHHHHHhhcCCCcceee
Q 007372 43 SLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLM 122 (606)
Q Consensus 43 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~ 122 (606)
+++.|.++.+.++. ..+.++. +.+|+.|++..|++++.+......++|+.|++.-+.. . .++.-...+|.|+.|+
T Consensus 34 ~ITrLtLSHNKl~~-vppnia~-l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-~--~lprgfgs~p~levld 108 (264)
T KOG0617|consen 34 NITRLTLSHNKLTV-VPPNIAE-LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-N--ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhcccCceee-cCCcHHH-hhhhhhhhcccchhhhcChhhhhchhhhheecchhhh-h--cCccccCCCchhhhhh
Confidence 44555666554332 1122333 6677777777777777666666667777777653211 1 1111114567777777
Q ss_pred eccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhccc
Q 007372 123 LELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNL 202 (606)
Q Consensus 123 l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (606)
+..+... ...+..-+..+..|+-|.++.++ .++.+...+.+ .+|+.|.++......++.-+..
T Consensus 109 ltynnl~-----e~~lpgnff~m~tlralyl~dnd--fe~lp~dvg~l-----t~lqil~lrdndll~lpkeig~----- 171 (264)
T KOG0617|consen 109 LTYNNLN-----ENSLPGNFFYMTTLRALYLGDND--FEILPPDVGKL-----TNLQILSLRDNDLLSLPKEIGD----- 171 (264)
T ss_pred ccccccc-----cccCCcchhHHHHHHHHHhcCCC--cccCChhhhhh-----cceeEEeeccCchhhCcHHHHH-----
Confidence 7544222 22222223344556666666555 44445555544 6777777776654444443332
Q ss_pred ccccCcccccccccCCCCccEEecccCCCC
Q 007372 203 METVQPPILTSSYYSSFNLRSLSLVLDVIT 232 (606)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 232 (606)
+..|++|++.++.+.
T Consensus 172 ---------------lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 172 ---------------LTRLRELHIQGNRLT 186 (264)
T ss_pred ---------------HHHHHHHhcccceee
Confidence 677888888776654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.48 E-value=1.4e-05 Score=80.91 Aligned_cols=237 Identities=22% Similarity=0.186 Sum_probs=121.5
Q ss_pred HHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHc
Q 007372 329 FAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRS 408 (606)
Q Consensus 329 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 408 (606)
+..++.-+++++.|.+-..+.-.......+ -.+.+|+.|.+.+|.--+..++..+- ..|++|--+ +-.+.--..
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~i-fpF~sLr~LElrg~~L~~~~GL~~lr--~qLe~LIC~---~Sl~Al~~v 149 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISI-FPFRSLRVLELRGCDLSTAKGLQELR--HQLEKLICH---NSLDALRHV 149 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCcee-ccccceeeEEecCcchhhhhhhHHHH--Hhhhhhhhh---ccHHHHHHH
Confidence 334444556676666655432221111111 13567888888887632222222222 234443321 111111111
Q ss_pred c-------c---CCCCCCEEEccCCCCC--hHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecC
Q 007372 409 I-------S---CLRKLTALNLTGADIT--DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLG 476 (606)
Q Consensus 409 l-------~---~~~~L~~L~l~~~~i~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~ 476 (606)
+ . ....|...+.+-|.+. |..++ -.|.|+.|+++.|. +++.. .+. .++.|++|||+
T Consensus 150 ~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk-~~~v~--~Lr-----~l~~LkhLDls 217 (1096)
T KOG1859|consen 150 FASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNK-FTKVD--NLR-----RLPKLKHLDLS 217 (1096)
T ss_pred HHHhccccccchhhhhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhh-hhhhH--HHH-----hcccccccccc
Confidence 1 1 1233444455544332 33333 35788999999887 55433 333 67899999998
Q ss_pred CCCCCCHHHHHHHH-HcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHH-HHHhhcCCCCC
Q 007372 477 YMPGISDDGILTIA-AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDS-LRWVKRPSFRG 554 (606)
Q Consensus 477 ~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~~~~~~ 554 (606)
+| .+.-. ..+. .+|. |..|.|.+|. ++. +..+.+ +.+|+.||+++|- +.... +..+ ..+..
T Consensus 218 yN-~L~~v--p~l~~~gc~-L~~L~lrnN~-l~t--L~gie~-------LksL~~LDlsyNl-l~~hseL~pL--wsLs~ 280 (1096)
T KOG1859|consen 218 YN-CLRHV--PQLSMVGCK-LQLLNLRNNA-LTT--LRGIEN-------LKSLYGLDLSYNL-LSEHSELEPL--WSLSS 280 (1096)
T ss_pred cc-hhccc--cccchhhhh-heeeeecccH-HHh--hhhHHh-------hhhhhccchhHhh-hhcchhhhHH--HHHHH
Confidence 87 44321 1111 2344 8889998887 543 444443 6689999998883 43311 1111 12347
Q ss_pred ceEEEeeceeccCC---ChhHHHHHhhcCCceEEeecccccccccceec
Q 007372 555 LHWLGIGQTRLASK---GNPVITEIHNERPWLTFCLDGCEIGCHDGWQF 600 (606)
Q Consensus 555 L~~L~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ 600 (606)
|+.|.+.|||+.-. -..+...+..+.....+.++|--++-..-|-+
T Consensus 281 L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~efwk~ 329 (1096)
T KOG1859|consen 281 LIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGREFWKR 329 (1096)
T ss_pred HHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccchhhhhh
Confidence 88999999987643 11233334333223346777766555555543
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.46 E-value=3.4e-05 Score=84.06 Aligned_cols=236 Identities=17% Similarity=0.092 Sum_probs=109.5
Q ss_pred CCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCC
Q 007372 243 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 322 (606)
Q Consensus 243 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 322 (606)
+|.|+.|-+.++.. + +.......+..++.|+.|++++|. ....+......+-+|++|++++.
T Consensus 544 ~~~L~tLll~~n~~----~---l~~is~~ff~~m~~LrVLDLs~~~----------~l~~LP~~I~~Li~LryL~L~~t- 605 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD----W---LLEISGEFFRSLPLLRVLDLSGNS----------SLSKLPSSIGELVHLRYLDLSDT- 605 (889)
T ss_pred CCccceEEEeecch----h---hhhcCHHHHhhCcceEEEECCCCC----------ccCcCChHHhhhhhhhcccccCC-
Confidence 46677776666421 0 111112224566777777777652 22222222334566777777766
Q ss_pred CCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCC-CCCHHHHHHhcCCCCCcEEEccCCCCC
Q 007372 323 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR-LITSETVKKLASSRNLEVLDLGGCKSI 401 (606)
Q Consensus 323 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~L~~L~l~~~~~~ 401 (606)
.+. .++.-+..+.+|.+|++..+...... ..+...+++|++|.+.... ..+...+..+..+.+|+.+..... ..
T Consensus 606 ~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~-s~ 680 (889)
T KOG4658|consen 606 GIS--HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS-SV 680 (889)
T ss_pred Ccc--ccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc-hh
Confidence 444 23333445566777777654322111 2333345677777775532 233344445555566666555332 11
Q ss_pred ChHHHHcccCCCCCCE----EEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCC-CCCCCEEecC
Q 007372 402 ADTCLRSISCLRKLTA----LNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI-SQSLTTLDLG 476 (606)
Q Consensus 402 ~~~~~~~l~~~~~L~~----L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~-~~~L~~L~l~ 476 (606)
..+..+..+++|+. +.+.++.. ...........+|+.|.+.+|. +.+..+.....+.... ++++..+.+.
T Consensus 681 --~~~e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~-~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 681 --LLLEDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCG-ISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred --HhHhhhhhhHHHHHHhHhhhhccccc--ceeecccccccCcceEEEEcCC-CchhhcccccccchhhhHHHHHHHHhh
Confidence 11222222222221 11111110 0111111235677777777776 2221111111000001 3355556666
Q ss_pred CCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCH
Q 007372 477 YMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD 509 (606)
Q Consensus 477 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 509 (606)
+|....+..+... .|+|+.|.+.+|..+.+
T Consensus 756 ~~~~~r~l~~~~f---~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 756 NCHMLRDLTWLLF---APHLTSLSLVSCRLLED 785 (889)
T ss_pred ccccccccchhhc---cCcccEEEEeccccccc
Confidence 6655554443333 37888888888874443
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.39 E-value=2.6e-05 Score=54.67 Aligned_cols=60 Identities=25% Similarity=0.237 Sum_probs=37.2
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 449 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 449 (606)
|+|++|++++| .++......+..+++|++|++++|.++..... .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 46777777776 66655555666777777777777765533222 22346666666666654
No 54
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.38 E-value=7.3e-06 Score=67.71 Aligned_cols=81 Identities=22% Similarity=0.166 Sum_probs=44.5
Q ss_pred CcccCceecccCCCChhhhhhhhcCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhC
Q 007372 66 CKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSC 145 (606)
Q Consensus 66 ~~~L~~L~l~~~~l~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~ 145 (606)
+.+++.|.+++|+++..+...-...+|+.|++.++ .+ ..++.-.+.+++|+.|++..+... .+..-++++
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qi--e~lp~~issl~klr~lnvgmnrl~-------~lprgfgs~ 101 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QI--EELPTSISSLPKLRILNVGMNRLN-------ILPRGFGSF 101 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hh--hhcChhhhhchhhhheecchhhhh-------cCccccCCC
Confidence 56777788888877766555444567777777654 22 223322346666666666433110 111223455
Q ss_pred CCCceeeeeec
Q 007372 146 LQLESLSLKIR 156 (606)
Q Consensus 146 ~~L~~L~l~~~ 156 (606)
|.|+.|++.++
T Consensus 102 p~levldltyn 112 (264)
T KOG0617|consen 102 PALEVLDLTYN 112 (264)
T ss_pred chhhhhhcccc
Confidence 66666666654
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=3.5e-05 Score=69.04 Aligned_cols=83 Identities=24% Similarity=0.209 Sum_probs=37.3
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
.+.++|+..+| .++| +.....+|.|+.|.|+-|+|+.. ..+. .|++|++|.+..|..-+-..+..+. ++
T Consensus 19 ~~vkKLNcwg~-~L~D--Isic~kMp~lEVLsLSvNkIssL--~pl~-rCtrLkElYLRkN~I~sldEL~YLk-----nl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDD--ISICEKMPLLEVLSLSVNKISSL--APLQ-RCTRLKELYLRKNCIESLDELEYLK-----NL 87 (388)
T ss_pred HHhhhhcccCC-CccH--HHHHHhcccceeEEeeccccccc--hhHH-HHHHHHHHHHHhcccccHHHHHHHh-----cC
Confidence 34455555554 4443 22233455555555555554432 1111 2455555555554422223333333 45
Q ss_pred CCCCEEecCCCCCC
Q 007372 468 QSLTTLDLGYMPGI 481 (606)
Q Consensus 468 ~~L~~L~l~~~~~l 481 (606)
|+|+.|+|..|+-.
T Consensus 88 psLr~LWL~ENPCc 101 (388)
T KOG2123|consen 88 PSLRTLWLDENPCC 101 (388)
T ss_pred chhhhHhhccCCcc
Confidence 55555555554433
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.33 E-value=4.4e-05 Score=77.55 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=35.9
Q ss_pred HHHHHhhCcccCceecccCCCCh--hhhhhhhcCCcceEeccCCCCCcHHHHHHHh
Q 007372 59 LIHILGRCKALCSLTLNCLRLQD--HSLCAFLTPRIRELNLWCCSSLSYQILASIG 112 (606)
Q Consensus 59 l~~~~~~~~~L~~L~l~~~~l~~--~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~ 112 (606)
+..+.+-.++++.|.+-...-.+ .++..+.|..|++|.+++|...+..|+..+.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr 131 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELR 131 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHH
Confidence 44455555666666663322222 2678888999999999999776666766553
No 57
>PLN03150 hypothetical protein; Provisional
Probab=97.15 E-value=0.00074 Score=71.98 Aligned_cols=108 Identities=19% Similarity=0.078 Sum_probs=64.8
Q ss_pred CcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCC
Q 007372 390 LEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS 469 (606)
Q Consensus 390 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~ 469 (606)
++.|+|+++ .+.......+..+++|+.|+|++|.++...-..+ ..+++|+.|++++|. ++......+. .+++
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~-lsg~iP~~l~-----~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNS-FNGSIPESLG-----QLTS 491 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCC-CCCCCchHHh-----cCCC
Confidence 667777766 5544444456677778888887776654322222 346778888887775 4433333344 5778
Q ss_pred CCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCC
Q 007372 470 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFY 506 (606)
Q Consensus 470 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 506 (606)
|+.|++++| .++......+.....++..+++.+|..
T Consensus 492 L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 492 LRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCEEECcCC-cccccCChHHhhccccCceEEecCCcc
Confidence 888888777 454333333332234566777777653
No 58
>PLN03150 hypothetical protein; Provisional
Probab=97.13 E-value=0.00077 Score=71.82 Aligned_cols=108 Identities=14% Similarity=0.104 Sum_probs=57.3
Q ss_pred CCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCC
Q 007372 415 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 494 (606)
Q Consensus 415 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (606)
++.|+|+++.++......+. .+++|+.|++++|. ++......+. .+++|+.|++++| +++......+ ..++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~-l~g~iP~~~~-----~l~~L~~LdLs~N-~lsg~iP~~l-~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNS-IRGNIPPSLG-----SITSLEVLDLSYN-SFNGSIPESL-GQLT 490 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCc-ccCcCChHHh-----CCCCCCEEECCCC-CCCCCCchHH-hcCC
Confidence 55666766655443222222 36677777777765 3322222233 5667777777776 4543333333 3567
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCC
Q 007372 495 GIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG 538 (606)
Q Consensus 495 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 538 (606)
+|+.|++++|. ++......+.. ...++..+++.+|..
T Consensus 491 ~L~~L~Ls~N~-l~g~iP~~l~~------~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 491 SLRILNLNGNS-LSGRVPAALGG------RLLHRASFNFTDNAG 527 (623)
T ss_pred CCCEEECcCCc-ccccCChHHhh------ccccCceEEecCCcc
Confidence 77777777765 44333333332 123455666666643
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00015 Score=65.09 Aligned_cols=104 Identities=17% Similarity=0.120 Sum_probs=68.4
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+.+.++|+..+|. +++. .....++.|+.|.|+-| .++. ++.+.+|++|+.|+|..|.|.+..--...++.|+|+
T Consensus 18 l~~vkKLNcwg~~-L~DI--sic~kMp~lEVLsLSvN-kIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDI--SICEKMPLLEVLSLSVN-KISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCC-ccHH--HHHHhcccceeEEeecc-cccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3466677777776 5553 23346788888888876 5553 566678888888888888888776555666788888
Q ss_pred EEEccCCCCCCHHH--HHHHHhhcCCCCCCCCEEe
Q 007372 442 NLCLRGCKRVTDKG--ISHLLCVGGTISQSLTTLD 474 (606)
Q Consensus 442 ~L~l~~~~~~~~~~--~~~l~~~~~~~~~~L~~L~ 474 (606)
.|.|..|+-....+ ..... .+.+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~V---LR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKV---LRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHH---HHHcccchhcc
Confidence 88888776332222 11111 13567777775
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.69 E-value=0.0029 Score=61.91 Aligned_cols=57 Identities=11% Similarity=0.223 Sum_probs=29.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 007372 309 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 375 (606)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 375 (606)
.|.+++.|++++| .++.- . .-.++|+.|.+++|..+... ... -.++|++|.+++|..
T Consensus 50 ~~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsL--P~~--LP~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTL--PGS--IPEGLEKLTVCHCPE 106 (426)
T ss_pred HhcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccC--Cch--hhhhhhheEccCccc
Confidence 4577777777777 43321 1 12235777777666543111 100 124666666666643
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.65 E-value=0.0032 Score=40.19 Aligned_cols=36 Identities=42% Similarity=0.514 Sum_probs=17.5
Q ss_pred CCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCC
Q 007372 389 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 426 (606)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 426 (606)
+|++|+++++ .+++.. ..+..+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N-~i~~l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSS-S-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCC-CCcccC-chHhCCCCCCEEEecCCCCC
Confidence 4555555555 444321 12555555555555555554
No 62
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.56 E-value=0.0027 Score=35.20 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=9.3
Q ss_pred CCCcEEEecCCCCCCHHHHHHH
Q 007372 494 IGIIDLCVRSCFYVTDASVEAL 515 (606)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~~~l 515 (606)
++|++|++++|.+|+|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 3444444444444444444333
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.53 E-value=0.0021 Score=65.00 Aligned_cols=36 Identities=31% Similarity=0.303 Sum_probs=17.0
Q ss_pred CCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceec
Q 007372 525 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRL 565 (606)
Q Consensus 525 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~ 565 (606)
+++++.|++++| .+++... + ....+|+.|+++++.+
T Consensus 254 l~~l~~L~~s~n-~i~~i~~--~--~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 254 LSNLETLDLSNN-QISSISS--L--GSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccceeccccc-ccccccc--c--cccCccCEEeccCccc
Confidence 444555555555 2433222 1 2344555555555544
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.46 E-value=0.0024 Score=40.82 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccC
Q 007372 526 KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 567 (606)
Q Consensus 526 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 567 (606)
++|++|++++| .+++.+. .+ .++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l--~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-EL--SNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HG--TTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccCc-hH--hCCCCCCEEEecCCCCCC
Confidence 35667777766 4554322 12 256677777777776553
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.38 E-value=0.0016 Score=56.03 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=70.2
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHH-HHHHHH
Q 007372 438 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDA-SVEALA 516 (606)
Q Consensus 438 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~ 516 (606)
.....+++++|....... + ..++.|.+|.+.+| .|++... .+...+|+|+.|.+.+|. |... .+..++
T Consensus 42 d~~d~iDLtdNdl~~l~~---l-----p~l~rL~tLll~nN-rIt~I~p-~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa 110 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN---L-----PHLPRLHTLLLNNN-RITRIDP-DLDTFLPNLKTLILTNNS-IQELGDLDPLA 110 (233)
T ss_pred cccceecccccchhhccc---C-----CCccccceEEecCC-cceeecc-chhhhccccceEEecCcc-hhhhhhcchhc
Confidence 456667777765322222 2 25778888888887 6664322 233456889999998887 4332 245555
Q ss_pred hhCCCcccCCCCCEEeccCCCCCCHHHHH-HhhcCCCCCceEEEeeceeccCC
Q 007372 517 RKQPDQEKSKQLRRLDLCNCIGLSVDSLR-WVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 517 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.||.|++|.+-+++ ++...-. ......+|+|+.||.++-...+.
T Consensus 111 -------~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 111 -------SCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTRKER 155 (233)
T ss_pred -------cCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhhHHHH
Confidence 48899999998886 4442222 11224688999999888764443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.00092 Score=59.97 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=28.8
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHccc-CCCCCCEEEccCCCCChH-HHHHHHhcCCCccEEEccCCC
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDS-GLSILAQGNLPIMNLCLRGCK 449 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~ 449 (606)
+..+|+|++|+++.+..-...++..+. .+|+|+++++++|.+.+. .+..+ ...++|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-hhhcchhhhhcccCC
Confidence 334556666666554222222233332 336666666666655431 11111 124455555555554
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.34 E-value=0.004 Score=60.99 Aligned_cols=145 Identities=18% Similarity=0.283 Sum_probs=87.0
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCC-CCCEEEccCC-CCChHHHHHHHhcCCCccEEEccCCCCCCHHH
Q 007372 378 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLR-KLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKG 455 (606)
Q Consensus 378 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 455 (606)
+.....+..+.+++.|++++| .++.. ..+| +|+.|.+++| .++... ..+ .++|++|++++|..+.
T Consensus 42 ~~a~~r~~~~~~l~~L~Is~c-~L~sL-----P~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~--- 108 (426)
T PRK15386 42 SEITPQIEEARASGRLYIKDC-DIESL-----PVLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEIS--- 108 (426)
T ss_pred HHHHHHHHHhcCCCEEEeCCC-CCccc-----CCCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCccccc---
Confidence 344455666899999999998 55432 2344 5999999987 432211 111 3689999999986443
Q ss_pred HHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccC
Q 007372 456 ISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 535 (606)
Q Consensus 456 ~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 535 (606)
.+ .++|+.|++..+ .... +..+. ++|++|.+.++........ ...+ .++|++|.+++
T Consensus 109 --sL-------P~sLe~L~L~~n-~~~~--L~~LP---ssLk~L~I~~~n~~~~~~l---p~~L-----PsSLk~L~Is~ 165 (426)
T PRK15386 109 --GL-------PESVRSLEIKGS-ATDS--IKNVP---NGLTSLSINSYNPENQARI---DNLI-----SPSLKTLSLTG 165 (426)
T ss_pred --cc-------ccccceEEeCCC-CCcc--cccCc---chHhheecccccccccccc---cccc-----CCcccEEEecC
Confidence 22 368899988754 3322 22222 5788888854321111111 1101 25899999999
Q ss_pred CCCCCHHHHHHhhcCCCCCceEEEeecee
Q 007372 536 CIGLSVDSLRWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 536 c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 564 (606)
|..+.. ...+ -.+|+.|.++.+.
T Consensus 166 c~~i~L--P~~L----P~SLk~L~ls~n~ 188 (426)
T PRK15386 166 CSNIIL--PEKL----PESLQSITLHIEQ 188 (426)
T ss_pred CCcccC--cccc----cccCcEEEecccc
Confidence 964421 1112 2489999998764
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.00045 Score=61.91 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCH-HHHHHHHhhCCCcccCCCCCEEeccCC
Q 007372 466 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD-ASVEALARKQPDQEKSKQLRRLDLCNC 536 (606)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~~~~~L~~L~l~~c 536 (606)
.+++|+.|.++.+..-...++..+++.+|+|++|.+++|. |.+ ..+..+.. +++|..|++.+|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~-------l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKE-------LENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhh-------hcchhhhhcccC
Confidence 3455555555554222233445555555666666666554 432 22333332 455556666655
No 69
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.20 E-value=0.0069 Score=33.55 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=12.5
Q ss_pred CCCCEEecCCCCCCCHHHHHHHH
Q 007372 468 QSLTTLDLGYMPGISDDGILTIA 490 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~ 490 (606)
++|++|+|++|++++|.++..++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 45555555555555555555543
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.11 E-value=0.00043 Score=70.21 Aligned_cols=226 Identities=21% Similarity=0.130 Sum_probs=99.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCC
Q 007372 309 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR 388 (606)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 388 (606)
.+.+|+.|++.++ .+.. +......+++|++|+++++.--.-..+.. ++.|+.|++.++. +.. +..+..++
T Consensus 93 ~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~-i~~--~~~~~~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNL-ISD--ISGLESLK 162 (414)
T ss_pred cccceeeeecccc-chhh--cccchhhhhcchheeccccccccccchhh----ccchhhheeccCc-chh--ccCCccch
Confidence 4456777777665 2221 11113346677777776654222222222 2346666666654 221 22233356
Q ss_pred CCcEEEccCCCCCChHHH-HcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 389 NLEVLDLGGCKSIADTCL-RSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
.|+.++++++ .+.+... . +..+.+++.+.+.++.+....-.... ..+..+++..+......++.... +
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~---~~l~~~~l~~n~i~~~~~l~~~~------~ 231 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGLDLL---KKLVLLSLLDNKISKLEGLNELV------M 231 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccchHHH---HHHHHhhcccccceeccCcccch------h
Confidence 6666666665 3333221 1 34555666666666644332211111 12222233333311111111111 0
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
.+|+.++++++ .+.... . ..+.++.++.|++..+. +.. ...+. ..+.+..++...+..........-
T Consensus 232 ~~L~~l~l~~n-~i~~~~-~-~~~~~~~l~~l~~~~n~-~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 298 (414)
T KOG0531|consen 232 LHLRELYLSGN-RISRSP-E-GLENLKNLPVLDLSSNR-ISN--LEGLE-------RLPKLSELWLNDNKLALSEAISQE 298 (414)
T ss_pred HHHHHHhcccC-cccccc-c-cccccccccccchhhcc-ccc--ccccc-------ccchHHHhccCcchhcchhhhhcc
Confidence 02667777666 333211 1 11334666677776655 222 11111 234455555555532211111111
Q ss_pred -hcCCCCCceEEEeeceeccCC
Q 007372 548 -KRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 548 -~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.....+.++.+.+.++++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 299 YITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccccccccccccccccCccccc
Confidence 123466788888888876654
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.59 E-value=0.01 Score=59.98 Aligned_cols=173 Identities=27% Similarity=0.251 Sum_probs=105.1
Q ss_pred CcccCceecccCCCChhhhhhhhcC-CcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHh
Q 007372 66 CKALCSLTLNCLRLQDHSLCAFLTP-RIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTS 144 (606)
Q Consensus 66 ~~~L~~L~l~~~~l~~~~l~~~~~~-~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~ 144 (606)
.+.++.|++..+.+++......... +|+.|+++++. +. .+..-...+++|+.|++..++ +. .+......
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~--~l~~~~~~l~~L~~L~l~~N~-----l~--~l~~~~~~ 184 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IE--SLPSPLRNLPNLKNLDLSFND-----LS--DLPKLLSN 184 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccc-hh--hhhhhhhccccccccccCCch-----hh--hhhhhhhh
Confidence 5789999999988887666555553 89999998763 22 221112689999999997662 22 22233336
Q ss_pred CCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEE
Q 007372 145 CLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSL 224 (606)
Q Consensus 145 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 224 (606)
.+.|+.|+++.+. +....-.. .....|+.+.+++........ .+.+..++..+
T Consensus 185 ~~~L~~L~ls~N~----i~~l~~~~---~~~~~L~~l~~~~N~~~~~~~--------------------~~~~~~~l~~l 237 (394)
T COG4886 185 LSNLNNLDLSGNK----ISDLPPEI---ELLSALEELDLSNNSIIELLS--------------------SLSNLKNLSGL 237 (394)
T ss_pred hhhhhheeccCCc----cccCchhh---hhhhhhhhhhhcCCcceecch--------------------hhhhccccccc
Confidence 7889999988643 11111100 112448888887773222222 12336667777
Q ss_pred ecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEecccc
Q 007372 225 SLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCR 288 (606)
Q Consensus 225 ~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 288 (606)
.+..+.+.+. ......+++++.|+++++... + +..+....+++.|++++..
T Consensus 238 ~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~---------~--i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 238 ELSNNKLEDL--PESIGNLSNLETLDLSNNQIS---------S--ISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccCCceeeec--cchhccccccceecccccccc---------c--cccccccCccCEEeccCcc
Confidence 6666655431 233345677888888886431 1 1126677788888888765
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.46 E-value=0.0048 Score=57.01 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=35.9
Q ss_pred CCCch----hhhHHHHHHhcCchhhhhhHHhhhHHHHhhh-ccccCCCC
Q 007372 1 METVP----SAVLNKEILGRLDIEALCSLACVNRALRFSV-ESQALPSL 44 (606)
Q Consensus 1 i~~LP----~evl~~~I~~~L~~~~~~~~~~vck~w~~~~-~~~~~~~l 44 (606)
|..|| +++.+ .||+||+..++++|.+|||+|+.+. ....|+.|
T Consensus 75 i~~lP~~gl~hi~e-~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAE-NILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHH-HHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 35689 89999 8999999999999999999999876 44455544
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.31 E-value=0.0022 Score=65.13 Aligned_cols=175 Identities=25% Similarity=0.236 Sum_probs=90.6
Q ss_pred CCCCccEEEccCCCCCCHHHHHH-hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCC
Q 007372 361 VPCALVEVRLLWCRLITSETVKK-LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLP 439 (606)
Q Consensus 361 ~~~~L~~L~l~~~~~l~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 439 (606)
.+.+|+.|.+.++. +.. +.. +..+++|++|+++++ .+++ +..+..++.|+.|++.+|.+++..-.. .++.
T Consensus 93 ~~~~l~~l~l~~n~-i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N~i~~~~~~~---~l~~ 163 (414)
T KOG0531|consen 93 KLKSLEALDLYDNK-IEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGNLISDISGLE---SLKS 163 (414)
T ss_pred cccceeeeeccccc-hhh--cccchhhhhcchheecccc-cccc--ccchhhccchhhheeccCcchhccCCc---cchh
Confidence 35667777776654 221 222 445677777777776 5553 344445555777777777665432111 1566
Q ss_pred ccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhC
Q 007372 440 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ 519 (606)
Q Consensus 440 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 519 (606)
|+.+++++|. ++......+ ..+.+++.+.+.++....-.++... ..+..+.+..|. ++. ++.+.
T Consensus 164 L~~l~l~~n~-i~~ie~~~~-----~~~~~l~~l~l~~n~i~~i~~~~~~----~~l~~~~l~~n~-i~~--~~~l~--- 227 (414)
T KOG0531|consen 164 LKLLDLSYNR-IVDIENDEL-----SELISLEELDLGGNSIREIEGLDLL----KKLVLLSLLDNK-ISK--LEGLN--- 227 (414)
T ss_pred hhcccCCcch-hhhhhhhhh-----hhccchHHHhccCCchhcccchHHH----HHHHHhhccccc-cee--ccCcc---
Confidence 7777777765 332221001 2456777777776622221122221 122233444443 221 11111
Q ss_pred CCcccCCC--CCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 520 PDQEKSKQ--LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 520 ~~~~~~~~--L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
..+. |+.+++++++ +.... ..+ ..++.+..|++..+++...
T Consensus 228 ----~~~~~~L~~l~l~~n~-i~~~~-~~~--~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 228 ----ELVMLHLRELYLSGNR-ISRSP-EGL--ENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred ----cchhHHHHHHhcccCc-ccccc-ccc--cccccccccchhhcccccc
Confidence 1233 7888888885 54421 112 3467899999998877544
No 74
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.14 E-value=0.0078 Score=51.89 Aligned_cols=108 Identities=15% Similarity=0.042 Sum_probs=69.4
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHH-HHH
Q 007372 467 SQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD-SLR 545 (606)
Q Consensus 467 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~ 545 (606)
..+...++++++..... ..+ .++++|..|.+..|. |+..... +.. .+|+|+.|.+.+|. +... .++
T Consensus 41 ~d~~d~iDLtdNdl~~l---~~l-p~l~rL~tLll~nNr-It~I~p~-L~~------~~p~l~~L~LtnNs-i~~l~dl~ 107 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL---DNL-PHLPRLHTLLLNNNR-ITRIDPD-LDT------FLPNLKTLILTNNS-IQELGDLD 107 (233)
T ss_pred ccccceecccccchhhc---ccC-CCccccceEEecCCc-ceeeccc-hhh------hccccceEEecCcc-hhhhhhcc
Confidence 46788889988832221 122 356889999998887 7664432 222 36789999999984 4432 233
Q ss_pred HhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeeccc
Q 007372 546 WVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGC 590 (606)
Q Consensus 546 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~ 590 (606)
.+ ..||+|+.|.+-+|++... .---..+....|.++ +++++.
T Consensus 108 pL--a~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 108 PL--ASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hh--ccCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhhh
Confidence 33 4799999999999998765 111122344557777 666654
No 75
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.53 E-value=0.014 Score=53.80 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=30.2
Q ss_pred CCCchhhhHHHHHHhc-----CchhhhhhHHhhhHHHHhhh
Q 007372 1 METVPSAVLNKEILGR-----LDIEALCSLACVNRALRFSV 36 (606)
Q Consensus 1 i~~LP~evl~~~I~~~-----L~~~~~~~~~~vck~w~~~~ 36 (606)
|..||+||+. .||.. ++.+++.++++|||+|+-.+
T Consensus 107 ~~~LPdEvLm-~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 107 ISVLPDEVLM-RIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhCCHHHHH-HHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 4579999999 69975 55689999999999999776
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.30 E-value=0.0077 Score=48.43 Aligned_cols=63 Identities=22% Similarity=0.177 Sum_probs=26.3
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCC
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 449 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 449 (606)
+.....|+..+|+++ .+.+..-.....+|.++.+++.+|.+++.... ++ .+|.|+.|+++.|+
T Consensus 49 l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 49 LSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSLNLRFNP 111 (177)
T ss_pred HhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhcccccCc
Confidence 333444445555444 33322212222334445555555544443333 22 24455555555544
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.15 E-value=0.018 Score=46.36 Aligned_cols=84 Identities=20% Similarity=0.104 Sum_probs=38.6
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
..|...+|++| ++.+. ...+...+|.++.|++++|. |.+...+ ++. +|+|+.|++..|+ +....-..+
T Consensus 53 ~el~~i~ls~N-~fk~f-p~kft~kf~t~t~lNl~~ne-isdvPeE-~Aa-------m~aLr~lNl~~N~-l~~~p~vi~ 120 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKKF-PKKFTIKFPTATTLNLANNE-ISDVPEE-LAA-------MPALRSLNLRFNP-LNAEPRVIA 120 (177)
T ss_pred ceEEEEecccc-hhhhC-CHHHhhccchhhhhhcchhh-hhhchHH-Hhh-------hHHhhhcccccCc-cccchHHHH
Confidence 44555555555 33322 12233334555666665554 5554444 442 5566666666664 333222121
Q ss_pred hcCCCCCceEEEeeceecc
Q 007372 548 KRPSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 548 ~~~~~~~L~~L~l~~~~~~ 566 (606)
+ +.+|-.|+..+|.+.
T Consensus 121 ~---L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 121 P---LIKLDMLDSPENARA 136 (177)
T ss_pred H---HHhHHHhcCCCCccc
Confidence 1 334555555555543
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.50 E-value=0.058 Score=29.10 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=6.9
Q ss_pred CCcEEEecCCCCCCHHHHHH
Q 007372 495 GIIDLCVRSCFYVTDASVEA 514 (606)
Q Consensus 495 ~L~~L~l~~~~~l~~~~~~~ 514 (606)
+|++|+|++|. |++.++..
T Consensus 3 ~L~~L~l~~n~-i~~~g~~~ 21 (24)
T PF13516_consen 3 NLETLDLSNNQ-ITDEGASA 21 (24)
T ss_dssp T-SEEE-TSSB-EHHHHHHH
T ss_pred CCCEEEccCCc-CCHHHHHH
Confidence 34444444443 44444333
No 79
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.04 E-value=0.072 Score=51.78 Aligned_cols=34 Identities=35% Similarity=0.419 Sum_probs=30.8
Q ss_pred CCchhhhHHHHHHhcCc-hhhhhhHHhhhHHHHhhh
Q 007372 2 ETVPSAVLNKEILGRLD-IEALCSLACVNRALRFSV 36 (606)
Q Consensus 2 ~~LP~evl~~~I~~~L~-~~~~~~~~~vck~w~~~~ 36 (606)
.+||+|++. .|...|+ ..|+++++.||+.||..+
T Consensus 5 s~Lp~dll~-~i~~~l~~~~d~~~~~~vC~sWr~a~ 39 (373)
T PLN03215 5 STLPEELLH-MIAGRLFSNVELKRFRSICRSWRSSV 39 (373)
T ss_pred hhCCHHHHH-HHHhhCCcHHHHHHHHhhhhhHHHhc
Confidence 379999999 7999996 669999999999999877
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.43 E-value=0.093 Score=28.27 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=3.9
Q ss_pred CEEEccCCCCCh
Q 007372 416 TALNLTGADITD 427 (606)
Q Consensus 416 ~~L~l~~~~i~~ 427 (606)
++|+|++|.+++
T Consensus 5 ~~L~l~~n~i~~ 16 (24)
T PF13516_consen 5 ETLDLSNNQITD 16 (24)
T ss_dssp SEEE-TSSBEHH
T ss_pred CEEEccCCcCCH
Confidence 333333333333
No 81
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.15 E-value=0.014 Score=58.32 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=24.8
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCC
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 449 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 449 (606)
++++..|+.|+++.+ .++... ..+..+| |+.|.+++|+++..... +. ..+.|..|+.+.|.
T Consensus 117 i~~L~~lt~l~ls~N-qlS~lp-~~lC~lp-Lkvli~sNNkl~~lp~~-ig-~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSN-QLSHLP-DGLCDLP-LKVLIVSNNKLTSLPEE-IG-LLPTLAHLDVSKNE 177 (722)
T ss_pred hhhhhHHHHhhhccc-hhhcCC-hhhhcCc-ceeEEEecCccccCCcc-cc-cchhHHHhhhhhhh
Confidence 334455555565554 222211 1112222 55555555544321110 11 23455555555554
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.74 E-value=0.032 Score=55.95 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=23.1
Q ss_pred CCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCC
Q 007372 219 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNT 257 (606)
Q Consensus 219 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 257 (606)
-.|..|++++|++.. ++.-+..+..|++|.|.+|+..
T Consensus 211 LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred CceeeeecccCceee--cchhhhhhhhheeeeeccCCCC
Confidence 456677777777664 3434455677777777776543
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.56 E-value=0.44 Score=26.80 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=10.1
Q ss_pred CCcEEEecCCCCCCHHHHHHHHh
Q 007372 495 GIIDLCVRSCFYVTDASVEALAR 517 (606)
Q Consensus 495 ~L~~L~l~~~~~l~~~~~~~l~~ 517 (606)
+|++|+|++|. +++.+...+..
T Consensus 3 ~L~~LdL~~N~-i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNNK-LGDEGARALAE 24 (28)
T ss_pred ccCEEECCCCC-CCHHHHHHHHH
Confidence 34444444444 44444444443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.90 E-value=0.73 Score=46.55 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=19.1
Q ss_pred hcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCC
Q 007372 435 QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 478 (606)
Q Consensus 435 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 478 (606)
.+.|.+..+++++|....-..+..+. ...|+|..|+|+++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ssls----q~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLS----QIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHH----Hhcchhheeecccc
Confidence 34455555555555433333444444 34455555555554
No 85
>PF13013 F-box-like_2: F-box-like domain
Probab=88.62 E-value=0.44 Score=37.26 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=25.9
Q ss_pred CCCchhhhHHHHHHhcCchhhhhhHHhhhH
Q 007372 1 METVPSAVLNKEILGRLDIEALCSLACVNR 30 (606)
Q Consensus 1 i~~LP~evl~~~I~~~L~~~~~~~~~~vck 30 (606)
+.+||.|++. .||.|.+..++..+...|+
T Consensus 22 l~DLP~ELl~-~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQ-LIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHH-HHHhhcCcHHHHHHHHHHH
Confidence 3579999999 6999999999988888887
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.18 E-value=0.77 Score=25.82 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=11.9
Q ss_pred CCCCEEEccCCCCChHHHHHHH
Q 007372 413 RKLTALNLTGADITDSGLSILA 434 (606)
Q Consensus 413 ~~L~~L~l~~~~i~~~~~~~l~ 434 (606)
++|+.|+|++|.+++.+...++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 3455555555555555555544
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.73 E-value=0.45 Score=23.11 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=5.0
Q ss_pred CceEEEeeceec
Q 007372 554 GLHWLGIGQTRL 565 (606)
Q Consensus 554 ~L~~L~l~~~~~ 565 (606)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555553
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.33 E-value=0.53 Score=48.97 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=32.5
Q ss_pred CCCchhhhHHHHHHhcCchhhhhhHHhhhHHHHhhh
Q 007372 1 METVPSAVLNKEILGRLDIEALCSLACVNRALRFSV 36 (606)
Q Consensus 1 i~~LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~ 36 (606)
+.-||.|+.. +|+.||+.++++++++||+.|+.+.
T Consensus 108 i~~lp~el~~-~il~~Ld~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 108 LSLLPSELSL-HILSFLDGRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred hhcccchhcc-cccccCCHHHhhhhhhhcchhhhhh
Confidence 3569999999 8999999999999999999999887
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.22 E-value=2.3 Score=43.11 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCC-CCCH-HHHHHHHhhCCCcccCCCCCEEeccCCCCCCHH
Q 007372 465 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF-YVTD-ASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD 542 (606)
Q Consensus 465 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-~l~~-~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~ 542 (606)
...+.+..+++++|.-..-+++..+++..|.|+.|+|++|. .+.. ..+..+ ...-|++|.+.||+-.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--------k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--------KGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--------cCCCHHHeeecCCccccch
Confidence 45677777778777444445666677777888888888773 1222 112222 2345777777777643331
Q ss_pred H-----HHHhhcCCCCCceEEE
Q 007372 543 S-----LRWVKRPSFRGLHWLG 559 (606)
Q Consensus 543 ~-----~~~l~~~~~~~L~~L~ 559 (606)
. +..+. ..||+|..||
T Consensus 287 ~~~s~yv~~i~-~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIR-ELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHH-Hhcchheeec
Confidence 1 11121 3467776655
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=74.61 E-value=0.99 Score=36.94 Aligned_cols=12 Identities=17% Similarity=0.559 Sum_probs=4.2
Q ss_pred cCCCCccEEEec
Q 007372 274 GSCHHLTGLSLT 285 (606)
Q Consensus 274 ~~~~~L~~L~l~ 285 (606)
..+++|+.+.+.
T Consensus 9 ~~~~~l~~i~~~ 20 (129)
T PF13306_consen 9 YNCSNLESITFP 20 (129)
T ss_dssp TT-TT--EEEET
T ss_pred hCCCCCCEEEEC
Confidence 344455555543
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=73.48 E-value=0.81 Score=37.49 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=4.2
Q ss_pred ccCCCCCCEEEc
Q 007372 409 ISCLRKLTALNL 420 (606)
Q Consensus 409 l~~~~~L~~L~l 420 (606)
+..+++|+.+.+
T Consensus 54 F~~~~~l~~i~~ 65 (129)
T PF13306_consen 54 FSNCKSLESITF 65 (129)
T ss_dssp TTT-TT-EEEEE
T ss_pred eecccccccccc
Confidence 334444444444
No 92
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=68.19 E-value=3.3 Score=21.59 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=10.3
Q ss_pred CceEEEeeceecc
Q 007372 554 GLHWLGIGQTRLA 566 (606)
Q Consensus 554 ~L~~L~l~~~~~~ 566 (606)
+|+.|++++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4788888888866
No 93
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=59.05 E-value=14 Score=20.29 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=16.3
Q ss_pred CceEEEeeceeccCCChhHHHHHhhcCC
Q 007372 554 GLHWLGIGQTRLASKGNPVITEIHNERP 581 (606)
Q Consensus 554 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 581 (606)
+|++|++....+.++ +.++.+...||
T Consensus 1 sLKtL~L~~v~f~~~--~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDE--DSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECCh--hHHHHhhccCc
Confidence 467777777776443 55666655554
No 94
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=56.78 E-value=22 Score=33.90 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCC---HHHHHHHHHcCCCCcEEEecCC
Q 007372 428 SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGIS---DDGILTIAAAGIGIIDLCVRSC 504 (606)
Q Consensus 428 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~ 504 (606)
..+..+-.+-|.++..++.+...+....+..+..+. +.....+...+.+. ..+ ..++..+.+.++.|++|++.+|
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal-~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesn 265 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEAL-KNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESN 265 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHH-hcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecccc
Confidence 345555556778888888877777766666555211 23345555555543 222 2345555677899999999999
Q ss_pred CCCCHHHHHHHHhhCCCcccCCCCCEEeccC
Q 007372 505 FYVTDASVEALARKQPDQEKSKQLRRLDLCN 535 (606)
Q Consensus 505 ~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 535 (606)
. |+..++-++..++. .-.+|..+.+.+
T Consensus 266 F-Itg~gi~a~~~al~---~n~tl~el~~dn 292 (353)
T KOG3735|consen 266 F-ITGLGIMALLRALQ---SNKSLTELKNDN 292 (353)
T ss_pred c-cccHHHHHHHHHHh---ccchhhHhhhhh
Confidence 8 99888877776554 445666666543
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=56.33 E-value=8.5 Score=20.88 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=8.3
Q ss_pred CCceEEEeeceeccC
Q 007372 553 RGLHWLGIGQTRLAS 567 (606)
Q Consensus 553 ~~L~~L~l~~~~~~~ 567 (606)
++|+.|++++|+|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455666666665443
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=56.33 E-value=8.5 Score=20.88 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=8.3
Q ss_pred CCceEEEeeceeccC
Q 007372 553 RGLHWLGIGQTRLAS 567 (606)
Q Consensus 553 ~~L~~L~l~~~~~~~ 567 (606)
++|+.|++++|+|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455666666665443
No 97
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=42.94 E-value=45 Score=31.94 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=12.2
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHH
Q 007372 466 ISQSLTTLDLGYMPGISDDGILTIA 490 (606)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~ 490 (606)
.-+.++..+|.+...+....+..+.
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~ 220 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFS 220 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHH
Confidence 3455555555555445444444443
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=41.87 E-value=17 Score=20.04 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=10.8
Q ss_pred CCceEEEeeceeccC
Q 007372 553 RGLHWLGIGQTRLAS 567 (606)
Q Consensus 553 ~~L~~L~l~~~~~~~ 567 (606)
++|+.|++++|+|..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 467888888887653
No 99
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=32.58 E-value=13 Score=34.10 Aligned_cols=46 Identities=28% Similarity=0.255 Sum_probs=35.2
Q ss_pred CCchhhhHHHHHHhcCc-hhhhhhHHhhhHHHHhhh-ccccCCCCceee
Q 007372 2 ETVPSAVLNKEILGRLD-IEALCSLACVNRALRFSV-ESQALPSLSSLH 48 (606)
Q Consensus 2 ~~LP~evl~~~I~~~L~-~~~~~~~~~vck~w~~~~-~~~~~~~l~~L~ 48 (606)
.+||.|++. .|+..++ -+|+..+++|-.....+. +...|+.|...+
T Consensus 203 ~dLP~e~vl-~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfH 250 (332)
T KOG3926|consen 203 HDLPLECVL-NILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFH 250 (332)
T ss_pred ccchHHHHH-HHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 589999999 5999887 779999999887777665 445666665444
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=31.64 E-value=24 Score=19.45 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=11.9
Q ss_pred CCceEEEeeceeccCC
Q 007372 553 RGLHWLGIGQTRLASK 568 (606)
Q Consensus 553 ~~L~~L~l~~~~~~~~ 568 (606)
++|+.|++++|+++..
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 4688888888886654
Done!