Query 007372
Match_columns 606
No_of_seqs 277 out of 2849
Neff 10.9
Searched_HMMs 29240
Date Tue Mar 26 00:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 1.1E-39 3.7E-44 348.3 43.5 495 1-584 6-534 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.9E-39 6.4E-44 346.2 36.3 487 3-563 15-548 (592)
3 2p1m_B Transport inhibitor res 100.0 1E-31 3.6E-36 286.6 35.0 437 39-564 63-542 (594)
4 3ogk_B Coronatine-insensitive 100.0 1E-31 3.5E-36 286.4 32.3 438 39-536 70-548 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-29 8.8E-34 259.2 31.4 214 362-585 226-459 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-27 1.1E-31 243.5 35.9 409 41-531 2-460 (461)
7 3t6q_A CD180 antigen; protein- 100.0 7.9E-31 2.7E-35 280.2 2.3 495 38-596 29-563 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-30 5E-35 278.1 -1.6 495 38-595 28-560 (606)
9 2ast_B S-phase kinase-associat 99.9 5.4E-26 1.9E-30 223.9 27.3 118 1-124 9-126 (336)
10 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-29 5E-34 274.0 1.2 216 362-600 404-632 (680)
11 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-27 4.1E-32 252.5 15.4 480 33-596 18-513 (549)
12 3rgz_A Protein brassinosteroid 99.9 5.5E-30 1.9E-34 279.6 -4.8 135 40-189 98-236 (768)
13 3t6q_A CD180 antigen; protein- 99.9 1E-29 3.4E-34 271.6 -3.3 473 39-568 54-562 (606)
14 3rgz_A Protein brassinosteroid 99.9 9.4E-31 3.2E-35 285.7 -12.1 330 215-594 219-552 (768)
15 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-27 6.6E-32 257.4 3.3 519 38-595 21-599 (680)
16 2z81_A CD282 antigen, TOLL-lik 99.9 1E-26 3.5E-31 245.3 7.5 450 39-568 47-512 (549)
17 2z7x_B TOLL-like receptor 1, v 99.9 7.1E-26 2.4E-30 237.1 9.7 451 39-568 18-483 (520)
18 3vq2_A TLR4, TOLL-like recepto 99.9 9.6E-27 3.3E-31 248.5 1.7 467 39-568 53-560 (606)
19 2z63_A TOLL-like receptor 4, v 99.9 2E-27 6.7E-32 252.2 -3.8 478 32-568 19-533 (570)
20 3j0a_A TOLL-like receptor 5; m 99.9 5.7E-28 2E-32 266.5 -8.6 511 29-595 13-562 (844)
21 2z63_A TOLL-like receptor 4, v 99.9 8E-28 2.7E-32 255.2 -9.7 450 67-595 28-533 (570)
22 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-24 5.8E-29 226.6 6.9 293 273-599 186-489 (520)
23 4fmz_A Internalin; leucine ric 99.9 2.9E-23 1E-27 205.3 15.3 303 176-566 44-346 (347)
24 3j0a_A TOLL-like receptor 5; m 99.9 3.5E-26 1.2E-30 252.2 -8.0 377 66-505 23-437 (844)
25 1o6v_A Internalin A; bacterial 99.9 1.2E-22 4.1E-27 208.9 13.3 216 309-568 175-390 (466)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.7E-24 1.3E-28 225.8 0.6 180 363-568 331-512 (562)
27 4fmz_A Internalin; leucine ric 99.9 4E-21 1.4E-25 189.9 19.2 148 361-537 197-344 (347)
28 1o6v_A Internalin A; bacterial 99.9 2E-21 6.9E-26 199.8 17.6 145 362-537 242-386 (466)
29 4ecn_A Leucine-rich repeat pro 99.9 9.8E-24 3.4E-28 228.5 -0.8 358 140-568 442-842 (876)
30 3v47_A TOLL-like receptor 5B a 99.9 2.3E-23 7.9E-28 214.2 1.1 136 413-568 275-410 (455)
31 4eco_A Uncharacterized protein 99.9 1.5E-23 5.1E-28 223.5 -0.6 357 140-568 200-602 (636)
32 3v47_A TOLL-like receptor 5B a 99.9 1.8E-23 6.3E-28 215.0 -0.5 333 218-596 29-411 (455)
33 2ca6_A RAN GTPase-activating p 99.8 1.6E-19 5.5E-24 180.9 24.8 253 309-569 30-319 (386)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.3E-22 7.8E-27 212.1 4.1 451 68-595 32-512 (562)
35 2ast_B S-phase kinase-associat 99.8 8E-20 2.7E-24 179.7 20.0 187 362-563 92-282 (336)
36 4g8a_A TOLL-like receptor 4; l 99.8 4.4E-22 1.5E-26 214.1 2.8 498 33-595 44-582 (635)
37 2ca6_A RAN GTPase-activating p 99.8 2.7E-19 9.1E-24 179.3 21.4 255 332-596 27-319 (386)
38 4eco_A Uncharacterized protein 99.8 3.8E-23 1.3E-27 220.4 -7.5 369 175-596 205-603 (636)
39 2id5_A Lingo-1, leucine rich r 99.8 4.8E-22 1.6E-26 205.5 -2.5 328 218-595 31-358 (477)
40 4ecn_A Leucine-rich repeat pro 99.8 1.2E-20 4.1E-25 204.4 5.7 370 175-595 447-842 (876)
41 3o6n_A APL1; leucine-rich repe 99.8 1.2E-20 4.2E-25 189.4 4.3 312 218-598 68-379 (390)
42 2id5_A Lingo-1, leucine rich r 99.8 2.5E-21 8.4E-26 200.2 -1.3 290 215-547 52-341 (477)
43 1jl5_A Outer protein YOPM; leu 99.8 1.1E-20 3.8E-25 192.3 1.9 344 41-505 10-368 (454)
44 4g8a_A TOLL-like receptor 4; l 99.8 3.8E-21 1.3E-25 206.8 -2.3 461 67-595 52-557 (635)
45 3o6n_A APL1; leucine-rich repe 99.8 3.8E-19 1.3E-23 178.6 10.6 134 388-547 226-359 (390)
46 1jl5_A Outer protein YOPM; leu 99.8 2.1E-21 7E-26 197.7 -6.3 375 66-567 10-410 (454)
47 3bz5_A Internalin-J, INLJ; leu 99.8 6.4E-19 2.2E-23 179.5 10.3 225 143-447 39-263 (457)
48 3goz_A Leucine-rich repeat-con 99.8 3.4E-18 1.2E-22 169.4 14.8 173 388-568 109-299 (362)
49 3oja_B Anopheles plasmodium-re 99.8 5.8E-20 2E-24 194.7 2.0 334 175-596 50-383 (597)
50 3goz_A Leucine-rich repeat-con 99.8 2.1E-18 7.3E-23 170.9 12.5 253 336-597 21-301 (362)
51 3bz5_A Internalin-J, INLJ; leu 99.8 1.5E-18 5.1E-23 176.8 9.8 327 40-505 40-366 (457)
52 3oja_B Anopheles plasmodium-re 99.7 3.5E-18 1.2E-22 181.0 10.4 246 216-515 120-365 (597)
53 1xku_A Decorin; proteoglycan, 99.7 6.5E-18 2.2E-22 165.4 2.2 202 363-590 121-329 (330)
54 2z80_A TOLL-like receptor 2, v 99.7 1.2E-17 4.2E-22 165.0 2.3 169 362-568 148-316 (353)
55 1xku_A Decorin; proteoglycan, 99.7 1.7E-17 5.8E-22 162.4 2.6 278 218-564 51-330 (330)
56 2z80_A TOLL-like receptor 2, v 99.6 5E-17 1.7E-21 160.6 4.5 214 218-456 51-266 (353)
57 3un9_A NLR family member X1; l 99.6 1.6E-15 5.4E-20 149.5 12.1 207 362-578 71-295 (372)
58 3g06_A SSPH2 (leucine-rich rep 99.6 2.5E-16 8.7E-21 165.1 6.3 292 219-601 40-344 (622)
59 3zyj_A Leucine-rich repeat-con 99.6 3E-17 1E-21 167.3 -1.0 228 311-566 64-292 (440)
60 2ft3_A Biglycan; proteoglycan, 99.6 2.1E-17 7E-22 161.9 -2.8 277 218-564 53-331 (332)
61 3un9_A NLR family member X1; l 99.6 5.8E-15 2E-19 145.4 14.7 195 336-542 71-285 (372)
62 3zyi_A Leucine-rich repeat-con 99.6 2.8E-17 9.4E-22 168.2 -2.0 229 311-567 75-304 (452)
63 2ft3_A Biglycan; proteoglycan, 99.6 2.2E-17 7.5E-22 161.7 -4.5 201 363-590 123-330 (332)
64 1ozn_A Reticulon 4 receptor; N 99.6 4.8E-17 1.6E-21 155.6 -2.2 187 361-568 54-240 (285)
65 3o53_A Protein LRIM1, AGAP0063 99.6 5.7E-17 2E-21 157.4 -2.0 263 219-564 10-273 (317)
66 1ozn_A Reticulon 4 receptor; N 99.6 1E-16 3.5E-21 153.3 -0.2 209 362-596 31-241 (285)
67 2z66_A Variable lymphocyte rec 99.6 1.1E-17 3.9E-22 161.8 -7.2 210 362-595 77-289 (306)
68 1ogq_A PGIP-2, polygalacturona 99.6 3.3E-18 1.1E-22 165.6 -13.5 206 361-595 99-306 (313)
69 2z66_A Variable lymphocyte rec 99.6 2.8E-17 9.6E-22 159.0 -7.3 212 360-596 49-264 (306)
70 3o53_A Protein LRIM1, AGAP0063 99.6 6.1E-17 2.1E-21 157.2 -5.2 223 305-566 28-250 (317)
71 1ogq_A PGIP-2, polygalacturona 99.5 1.7E-17 6E-22 160.5 -11.1 251 219-539 50-304 (313)
72 3zyj_A Leucine-rich repeat-con 99.5 3E-16 1E-20 159.9 -2.5 227 277-537 64-290 (440)
73 3zyi_A Leucine-rich repeat-con 99.5 2.6E-15 8.8E-20 153.6 2.6 132 362-505 170-301 (452)
74 1wwl_A Monocyte differentiatio 99.5 4.7E-16 1.6E-20 150.5 -3.3 183 361-567 119-310 (312)
75 1h6u_A Internalin H; cell adhe 99.5 2.9E-14 1E-18 137.4 9.1 192 337-568 41-232 (308)
76 2z62_A TOLL-like receptor 4, v 99.5 5.1E-16 1.7E-20 147.7 -3.2 207 337-568 28-239 (276)
77 4glp_A Monocyte differentiatio 99.5 1.1E-14 3.7E-19 140.9 4.5 231 311-567 64-308 (310)
78 4glp_A Monocyte differentiatio 99.5 4.9E-15 1.7E-19 143.3 1.7 231 277-537 64-305 (310)
79 3g06_A SSPH2 (leucine-rich rep 99.5 1.6E-13 5.6E-18 143.8 13.2 51 68-126 41-91 (622)
80 3oja_A Leucine-rich immune mol 99.5 4.8E-15 1.6E-19 152.3 -0.5 62 363-426 120-182 (487)
81 3oja_A Leucine-rich immune mol 99.5 5.2E-15 1.8E-19 152.0 -0.6 245 309-595 32-284 (487)
82 3e4g_A ATP synthase subunit S, 99.4 1.4E-13 4.6E-18 117.3 7.9 104 439-556 62-170 (176)
83 1h6u_A Internalin H; cell adhe 99.4 7.9E-14 2.7E-18 134.4 7.1 192 362-595 40-232 (308)
84 4fcg_A Uncharacterized protein 99.4 1.5E-15 5.1E-20 147.8 -5.0 180 362-566 126-314 (328)
85 2o6q_A Variable lymphocyte rec 99.4 8.9E-15 3E-19 138.4 -0.4 184 363-568 37-220 (270)
86 1wwl_A Monocyte differentiatio 99.4 4.1E-14 1.4E-18 136.9 3.9 206 362-594 94-310 (312)
87 3e4g_A ATP synthase subunit S, 99.4 4.2E-13 1.4E-17 114.3 9.3 104 388-497 61-170 (176)
88 2z62_A TOLL-like receptor 4, v 99.4 1.1E-14 3.7E-19 138.4 -1.2 207 363-595 28-239 (276)
89 1p9a_G Platelet glycoprotein I 99.4 1.5E-14 5.2E-19 137.9 -0.8 202 335-568 8-210 (290)
90 4fcg_A Uncharacterized protein 99.4 4.5E-14 1.5E-18 137.4 1.9 84 362-448 228-311 (328)
91 2o6q_A Variable lymphocyte rec 99.4 2.2E-14 7.6E-19 135.6 -1.2 184 388-596 37-221 (270)
92 3rfs_A Internalin B, repeat mo 99.4 2.3E-14 7.9E-19 135.6 -1.8 174 362-566 62-235 (272)
93 3rfs_A Internalin B, repeat mo 99.4 6.8E-14 2.3E-18 132.4 1.0 180 363-568 41-220 (272)
94 4ezg_A Putative uncharacterize 99.3 4.4E-13 1.5E-17 120.0 4.5 151 388-566 44-194 (197)
95 1h6t_A Internalin B; cell adhe 99.3 1.1E-12 3.9E-17 125.0 7.1 152 384-568 64-215 (291)
96 1p9a_G Platelet glycoprotein I 99.3 1.6E-13 5.5E-18 130.8 0.8 200 309-538 8-207 (290)
97 4ezg_A Putative uncharacterize 99.3 7.8E-12 2.7E-16 111.8 8.5 83 362-449 65-147 (197)
98 1h6t_A Internalin B; cell adhe 99.2 6.5E-12 2.2E-16 119.8 6.8 146 361-537 66-211 (291)
99 1m9s_A Internalin B; cell inva 99.2 4.1E-12 1.4E-16 133.1 5.4 151 385-568 62-212 (605)
100 3m19_A Variable lymphocyte rec 99.2 1.2E-12 4.2E-17 122.1 0.2 160 388-568 35-194 (251)
101 2xwt_C Thyrotropin receptor; s 99.2 3E-13 1E-17 125.4 -4.2 179 362-564 54-237 (239)
102 2xwt_C Thyrotropin receptor; s 99.2 2E-13 6.7E-18 126.6 -6.3 184 363-568 31-220 (239)
103 3m19_A Variable lymphocyte rec 99.2 2.9E-12 1E-16 119.5 0.2 156 363-537 35-190 (251)
104 1io0_A Tropomodulin; LRR prote 99.1 6.1E-10 2.1E-14 97.9 14.1 126 436-568 34-166 (185)
105 2ra8_A Uncharacterized protein 99.1 2.3E-10 7.8E-15 111.5 11.9 168 384-564 168-341 (362)
106 2ra8_A Uncharacterized protein 99.1 2E-10 6.7E-15 112.0 11.3 190 308-537 136-341 (362)
107 1io0_A Tropomodulin; LRR prote 99.1 4.7E-10 1.6E-14 98.7 12.4 128 408-543 31-167 (185)
108 1m9s_A Internalin B; cell inva 99.1 3.3E-11 1.1E-15 126.2 5.7 168 309-505 41-208 (605)
109 1xeu_A Internalin C; cellular 99.1 6E-11 2.1E-15 111.1 4.3 149 386-568 39-187 (263)
110 2je0_A Acidic leucine-rich nuc 99.0 2E-10 6.7E-15 97.5 5.3 11 363-373 17-27 (149)
111 2je0_A Acidic leucine-rich nuc 99.0 4E-10 1.4E-14 95.6 6.6 130 387-535 16-149 (149)
112 3cvr_A Invasion plasmid antige 99.0 3.8E-11 1.3E-15 124.3 -0.2 175 363-577 80-254 (571)
113 1xeu_A Internalin C; cellular 98.9 2.7E-10 9.1E-15 106.7 3.5 125 384-537 59-183 (263)
114 2o6s_A Variable lymphocyte rec 98.9 4E-11 1.4E-15 108.3 -3.1 153 388-568 28-180 (208)
115 2ell_A Acidic leucine-rich nuc 98.9 3.2E-10 1.1E-14 98.4 2.4 105 363-478 24-130 (168)
116 2o6s_A Variable lymphocyte rec 98.9 7.2E-11 2.5E-15 106.6 -1.8 148 363-536 28-175 (208)
117 2ell_A Acidic leucine-rich nuc 98.9 6.4E-11 2.2E-15 102.9 -2.4 89 466-567 69-161 (168)
118 2xot_A Amphoterin-induced prot 98.9 1.3E-10 4.4E-15 114.6 -0.9 84 363-449 39-123 (361)
119 2xot_A Amphoterin-induced prot 98.9 1.6E-10 5.6E-15 113.9 -0.3 160 337-505 39-200 (361)
120 2v70_A SLIT-2, SLIT homolog 2 98.9 1.2E-10 4E-15 106.0 -2.5 135 415-568 34-168 (220)
121 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 1.9E-09 6.4E-14 72.3 4.0 43 1-44 9-52 (53)
122 2v9t_B SLIT homolog 2 protein 98.8 4.6E-10 1.6E-14 102.0 0.9 42 384-426 52-93 (220)
123 3e6j_A Variable lymphocyte rec 98.8 5.8E-10 2E-14 102.1 1.2 111 466-590 86-198 (229)
124 3sb4_A Hypothetical leucine ri 98.8 4.4E-09 1.5E-13 102.2 6.1 81 337-422 202-283 (329)
125 2v9t_B SLIT homolog 2 protein 98.8 5.1E-10 1.7E-14 101.8 -0.6 136 388-568 32-167 (220)
126 3sb4_A Hypothetical leucine ri 98.8 1.9E-10 6.4E-15 112.0 -3.9 248 276-567 24-311 (329)
127 3e6j_A Variable lymphocyte rec 98.7 1.9E-09 6.6E-14 98.6 1.7 131 388-537 40-170 (229)
128 1pgv_A TMD-1, tropomodulin TMD 98.7 1.5E-07 5E-12 81.7 13.4 132 429-566 32-170 (197)
129 2v70_A SLIT-2, SLIT homolog 2 98.7 1.5E-09 5E-14 98.7 0.6 13 525-537 152-164 (220)
130 1a9n_A U2A', U2A'; complex (nu 98.7 2.7E-09 9.3E-14 93.2 1.6 13 552-564 139-151 (176)
131 1a9n_A U2A', U2A'; complex (nu 98.7 1.1E-08 3.7E-13 89.3 4.3 81 362-449 18-99 (176)
132 1dce_A Protein (RAB geranylger 98.6 5.4E-10 1.8E-14 116.3 -5.7 83 361-449 461-544 (567)
133 4ay9_X Follicle-stimulating ho 98.6 2.2E-10 7.6E-15 112.5 -8.4 205 337-564 30-234 (350)
134 3cvr_A Invasion plasmid antige 98.6 4.3E-08 1.5E-12 101.5 8.3 165 218-431 79-248 (571)
135 4ay9_X Follicle-stimulating ho 98.6 1.5E-10 5.3E-15 113.6 -10.2 227 311-564 30-257 (350)
136 1pgv_A TMD-1, tropomodulin TMD 98.5 4.6E-07 1.6E-11 78.6 9.8 130 454-592 31-169 (197)
137 1ds9_A Outer arm dynein; leuci 98.5 1.8E-09 6.1E-14 96.5 -5.8 136 408-568 43-187 (198)
138 1ds9_A Outer arm dynein; leuci 98.5 1.6E-08 5.6E-13 90.1 0.0 127 383-532 43-180 (198)
139 2o6r_A Variable lymphocyte rec 98.4 4.1E-08 1.4E-12 85.8 1.3 90 466-568 50-139 (177)
140 1dce_A Protein (RAB geranylger 98.4 5.9E-08 2E-12 101.0 0.8 125 176-344 441-567 (567)
141 2wfh_A SLIT homolog 2 protein 98.3 2.2E-07 7.5E-12 82.2 3.2 42 384-426 50-91 (193)
142 1w8a_A SLIT protein; signaling 98.3 2.6E-08 9E-13 88.2 -3.3 15 552-566 125-139 (192)
143 2o6r_A Variable lymphocyte rec 98.3 2.5E-07 8.5E-12 80.7 2.6 41 385-426 49-89 (177)
144 2wfh_A SLIT homolog 2 protein 98.2 2.7E-07 9.1E-12 81.6 1.4 59 388-449 31-89 (193)
145 1w8a_A SLIT protein; signaling 98.2 2.4E-07 8.2E-12 82.0 0.8 40 386-426 52-91 (192)
146 4b8c_D Glucose-repressible alc 98.1 2.7E-07 9.1E-12 99.3 -2.4 109 361-483 222-330 (727)
147 4fs7_A Uncharacterized protein 98.0 6.5E-08 2.2E-12 96.5 -7.7 12 551-562 364-375 (394)
148 4fdw_A Leucine rich hypothetic 98.0 1.9E-07 6.5E-12 92.7 -4.7 14 384-397 222-235 (401)
149 4fs7_A Uncharacterized protein 97.9 1.5E-07 5.2E-12 93.8 -6.9 59 213-285 65-125 (394)
150 4fdw_A Leucine rich hypothetic 97.9 1.1E-06 3.7E-11 87.3 -1.0 61 384-449 296-356 (401)
151 2r9u_A Variable lymphocyte rec 97.8 3.9E-06 1.3E-10 72.6 0.9 109 468-589 33-143 (174)
152 4b8c_D Glucose-repressible alc 97.8 4E-06 1.4E-10 90.1 1.1 113 383-510 219-331 (727)
153 3l2o_B F-box only protein 4; s 97.8 7.1E-06 2.4E-10 74.5 1.8 34 2-36 6-39 (312)
154 3g39_A Variable lymphocyte rec 97.7 1.2E-05 4.1E-10 69.3 2.5 83 388-478 30-112 (170)
155 2r9u_A Variable lymphocyte rec 97.7 1.4E-05 4.9E-10 69.0 2.5 83 388-478 33-115 (174)
156 2e31_A FBS1, F-box only protei 97.7 2.1E-05 7.1E-10 72.6 3.5 35 1-36 51-86 (297)
157 4gt6_A Cell surface protein; l 97.6 1.5E-05 5.1E-10 79.3 2.1 81 466-564 309-389 (394)
158 3g39_A Variable lymphocyte rec 97.5 2.4E-05 8.2E-10 67.3 2.0 84 413-505 30-113 (170)
159 4gt6_A Cell surface protein; l 97.4 8.9E-06 3E-10 81.0 -2.8 291 215-564 59-368 (394)
160 3v7d_B Cell division control p 97.0 0.00016 5.4E-09 73.6 1.8 34 2-36 16-49 (464)
161 2ifg_A High affinity nerve gro 97.0 0.00023 7.8E-09 69.4 2.8 63 362-426 30-93 (347)
162 3rw6_A Nuclear RNA export fact 97.0 0.0013 4.4E-08 60.4 7.3 58 386-445 194-258 (267)
163 3rw6_A Nuclear RNA export fact 96.9 0.00074 2.5E-08 62.0 4.9 14 436-449 168-181 (267)
164 2ifg_A High affinity nerve gro 96.9 0.00045 1.5E-08 67.2 3.1 88 335-426 29-116 (347)
165 1p22_A F-BOX/WD-repeat protein 96.8 0.00036 1.2E-08 70.4 2.1 40 2-42 12-56 (435)
166 2ovr_B FBW7, F-BOX/WD repeat p 96.7 0.00067 2.3E-08 68.6 3.3 35 1-36 19-53 (445)
167 4h09_A Hypothetical leucine ri 88.6 0.066 2.2E-06 52.4 -0.8 10 525-534 332-341 (379)
168 4h09_A Hypothetical leucine ri 87.5 0.13 4.3E-06 50.4 0.5 15 408-422 281-295 (379)
169 3rfe_A Platelet glycoprotein I 82.0 0.41 1.4E-05 38.2 1.1 40 526-568 31-70 (130)
170 3rfe_A Platelet glycoprotein I 74.4 2.1 7.1E-05 34.0 3.1 36 389-425 32-67 (130)
171 2lz0_A Uncharacterized protein 30.8 22 0.00075 26.4 1.8 39 383-423 15-53 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.1e-39 Score=348.29 Aligned_cols=495 Identities=18% Similarity=0.174 Sum_probs=251.3
Q ss_pred CCCchhhhHHHHHHhcCc-hhhhhhHHhhhHHHHhhhccccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccC-C
Q 007372 1 METVPSAVLNKEILGRLD-IEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCL-R 78 (606)
Q Consensus 1 i~~LP~evl~~~I~~~L~-~~~~~~~~~vck~w~~~~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~ 78 (606)
+.+||+||+. +||+||+ .+|++++++|||+|+.+. ...| +.+++..+.... ...+..++++|++|+++++ .
T Consensus 6 ~~~LPdevL~-~If~~L~~~~d~~~~s~vck~W~~~~-~~~~---~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~ 78 (594)
T 2p1m_B 6 ALSFPEEVLE-HVFSFIQLDKDRNSVSLVCKSWYEIE-RWCR---RKVFIGNCYAVS--PATVIRRFPKVRSVELKGKPH 78 (594)
T ss_dssp ----CHHHHH-HHHHTCCCHHHHHHHHTSCHHHHHHH-HHHC---CEEEESSTTSSC--HHHHHHHCTTCCEEEEECSCG
T ss_pred hhhCCHHHHH-HHHhhcCCchhHHHHHHHHHHHHHhh-hhhc---eEEeeccccccC--HHHHHhhCCCceEEeccCCCc
Confidence 3589999999 7999999 999999999999999884 3333 466777665433 3356667999999999654 3
Q ss_pred CChhh-------------hhhhh--cCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHH
Q 007372 79 LQDHS-------------LCAFL--TPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLT 143 (606)
Q Consensus 79 l~~~~-------------l~~~~--~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~ 143 (606)
+.+.. +..+. +++|++|++++| .+++..+..+...+++|++|++..+. .++..++..+..
T Consensus 79 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~ 153 (594)
T 2p1m_B 79 FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAA 153 (594)
T ss_dssp GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHH
T ss_pred hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHH
Confidence 33322 12222 478888888877 46777777776678888888886652 345556667777
Q ss_pred hCCCCceeeeeeccCcccccccchhhhh--hhcccceeEEeecCCc----ccchHHHHHHhhcccccccCcccccccccC
Q 007372 144 SCLQLESLSLKIRGFGVEVDACAFQSII--FFLPSTIKSLKLQPVL----ERDAFFLIRRIGRNLMETVQPPILTSSYYS 217 (606)
Q Consensus 144 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~--~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (606)
++++|++|+++.+. +.......+. ...+++|+.|+++++. ...+..+.. .
T Consensus 154 ~~~~L~~L~L~~~~----i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~--------------------~ 209 (594)
T 2p1m_B 154 TCRNLKELDLRESD----VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT--------------------R 209 (594)
T ss_dssp HCTTCCEEECTTCE----EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH--------------------H
T ss_pred hCCCCCEEeCcCCc----cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH--------------------h
Confidence 88888888887532 2222211110 1124555555555543 111111111 1
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEE-eccccccCCCCcc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLS-LTRCRHNHQGTFK 296 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~ 296 (606)
+++|++|+++++. ....++.+...+++|++|++..+...... ..+. .....+..+++|+.|. +..
T Consensus 210 ~~~L~~L~L~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~-~l~~~l~~~~~L~~Ls~~~~---------- 275 (594)
T 2p1m_B 210 CPNLKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRP--DVYS-GLSVALSGCKELRCLSGFWD---------- 275 (594)
T ss_dssp CTTCCEEECCTTS-CHHHHHHHHHHCTTCSEEECSBCCCCCCH--HHHH-HHHHHHHTCTTCCEEECCBT----------
T ss_pred CCCCcEEecCCCC-cHHHHHHHHhcCCcceEcccccccCccch--hhHH-HHHHHHhcCCCcccccCCcc----------
Confidence 4555555555431 11124444444555555555443210000 0000 0111233445555542 111
Q ss_pred ccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCC
Q 007372 297 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI 376 (606)
Q Consensus 297 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l 376 (606)
.....+..+...+++|++|++++|. +++..+..+...+++|+.|++.++ +.+..+..+...+++|++|++.+|...
T Consensus 276 -~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 276 -AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp -CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred -cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCccc
Confidence 2222222233344555555555552 444444444444555555555543 333344444444444554444211000
Q ss_pred CHHHHHHhcCCCCCcEEEccCCCCCChHHHHccc-CCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEcc-----CCCC
Q 007372 377 TSETVKKLASSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLR-----GCKR 450 (606)
Q Consensus 377 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~-----~~~~ 450 (606)
. ...+..+++.++..+. .+++|++|.+..+.+++.++..+...+++|++|+++ +|..
T Consensus 352 g-----------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 352 V-----------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp C-----------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred c-----------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 0 0122244444444443 255555555544455555555554445555555555 3444
Q ss_pred CC----HHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCC
Q 007372 451 VT----DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSK 526 (606)
Q Consensus 451 ~~----~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~ 526 (606)
++ +.++..+. ..+++|+.|++++ .+++.++..+.+.+++|++|++++|. +++.++..+.. .++
T Consensus 415 l~~~~~~~~~~~l~----~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~------~~~ 481 (594)
T 2p1m_B 415 LTLEPLDIGFGAIV----EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLS------GCD 481 (594)
T ss_dssp TTCCCTHHHHHHHH----HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHH------HCT
T ss_pred ccCCchhhHHHHHH----hhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHh------cCC
Confidence 44 44444433 2445555555544 45555555555445555555555554 55555555533 355
Q ss_pred CCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE
Q 007372 527 QLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT 584 (606)
Q Consensus 527 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 584 (606)
+|++|++++|+ +++.++..+. ..+++|+.|++++|+++. +.+..+....|.+.
T Consensus 482 ~L~~L~L~~n~-~~~~~~~~~~-~~l~~L~~L~l~~~~~~~---~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 482 SLRKLEIRDCP-FGDKALLANA-SKLETMRSLWMSSCSVSF---GACKLLGQKMPKLN 534 (594)
T ss_dssp TCCEEEEESCS-CCHHHHHHTG-GGGGGSSEEEEESSCCBH---HHHHHHHHHCTTEE
T ss_pred CcCEEECcCCC-CcHHHHHHHH-HhCCCCCEEeeeCCCCCH---HHHHHHHHhCCCCE
Confidence 55555555553 3544444332 234555555555555421 23333434445554
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.9e-39 Score=346.23 Aligned_cols=487 Identities=18% Similarity=0.167 Sum_probs=294.4
Q ss_pred CchhhhHHHHHHhcC-chhhhhhHHhhhHHHHhhhccccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccC-CCC
Q 007372 3 TVPSAVLNKEILGRL-DIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCL-RLQ 80 (606)
Q Consensus 3 ~LP~evl~~~I~~~L-~~~~~~~~~~vck~w~~~~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~l~ 80 (606)
.||+|++. +||+|| +.+|++++++|||+|+.+. ...+ +.+.+..+.. .....+..++++|++|+++++ .+.
T Consensus 15 ~LPdeil~-~I~~~L~~~~d~~~~s~vck~W~~~~-~~~~---~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~ 87 (592)
T 3ogk_B 15 ATVDDVIE-QVMTYITDPKDRDSASLVCRRWFKID-SETR---EHVTMALCYT--ATPDRLSRRFPNLRSLKLKGKPRAA 87 (592)
T ss_dssp CCGGGTHH-HHHTTCCCHHHHHHHTTSCHHHHHHH-HHHC---CEEEESCGGG--SCHHHHHHHCTTCSEEEEECSCGGG
T ss_pred CCCHHHHH-HHHHhcCCHHHHHHHHHHhHHHHHhh-hccc---cEEEEeeccc--cChHHHHHhCCCCeEEEecCCcchh
Confidence 69999999 799999 8999999999999999875 1111 2233332211 123445556777777777432 111
Q ss_pred hh-------------hhhhhh--cCCcceEeccCCCCCcHHHHHHHhhcCCC-cceeeeccccccCCccchHHHHHHHHh
Q 007372 81 DH-------------SLCAFL--TPRIRELNLWCCSSLSYQILASIGHNCPN-LRVLMLELADKESPHLFENNLAIMLTS 144 (606)
Q Consensus 81 ~~-------------~l~~~~--~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~i~~~~l~~~~~~ 144 (606)
+. .+..+. +++|++|++++| .+++..+..+...+++ |++|++..+. .+...++..+...
T Consensus 88 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~ 162 (592)
T 3ogk_B 88 MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCS----GFTTDGLLSIVTH 162 (592)
T ss_dssp GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCE----EEEHHHHHHHHHH
T ss_pred hcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCC----CcCHHHHHHHHhh
Confidence 11 122221 366666666665 4555555555444444 6666665542 2344455555566
Q ss_pred CCCCceeeeeeccCcccccccc---hhhhhhhcccceeEEeecCCccc-----chHHHHHHhhcccccccCccccccccc
Q 007372 145 CLQLESLSLKIRGFGVEVDACA---FQSIIFFLPSTIKSLKLQPVLER-----DAFFLIRRIGRNLMETVQPPILTSSYY 216 (606)
Q Consensus 145 ~~~L~~L~l~~~~~~~~~~~~~---~~~l~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (606)
+++|++|+++++. +.+.+ +..+ ...+++|+.|+++++... .+..++.
T Consensus 163 ~~~L~~L~L~~~~----~~~~~~~~l~~~-~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~-------------------- 217 (592)
T 3ogk_B 163 CRKIKTLLMEESS----FSEKDGKWLHEL-AQHNTSLEVLNFYMTEFAKISPKDLETIAR-------------------- 217 (592)
T ss_dssp CTTCSEEECTTCE----EECCCSHHHHHH-HHHCCCCCEEECTTCCCSSCCHHHHHHHHH--------------------
T ss_pred CCCCCEEECcccc----ccCcchhHHHHH-HhcCCCccEEEeeccCCCccCHHHHHHHHh--------------------
Confidence 6666666666432 21111 1111 223456666666554332 2222222
Q ss_pred CCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCcc
Q 007372 217 SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK 296 (606)
Q Consensus 217 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 296 (606)
++++|++|+++.+.+.. ++.....+++|++|++..+..... .......+..+++|+.|.+...
T Consensus 218 ~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~l~~~~~L~~L~l~~~--------- 280 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIG------MPEKYMNLVFPRKLCRLGLSYM--------- 280 (592)
T ss_dssp HCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTT------CTTSSSCCCCCTTCCEEEETTC---------
T ss_pred hCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccc------hHHHHHHhhccccccccCcccc---------
Confidence 26777777777655543 334455677777777764321100 0111233456677777777653
Q ss_pred ccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccC----
Q 007372 297 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW---- 372 (606)
Q Consensus 297 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~---- 372 (606)
....+..+...+++|++|++++|. +++..+..+...+++|+.|++.+ .+.+..+..+...+++|++|++++
T Consensus 281 --~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 281 --GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp --CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred --chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccc
Confidence 222233344466778888888773 77777766677778888887773 355666666666777777777774
Q ss_pred ------CCCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHcccC-CCCCCEEEcc----CCCCCh----HHHHHHHhc
Q 007372 373 ------CRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISC-LRKLTALNLT----GADITD----SGLSILAQG 436 (606)
Q Consensus 373 ------~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~i~~----~~~~~l~~~ 436 (606)
|..+++.++..+. .+++|++|+++.+ .+++..+..+.. +++|++|++. .+.+++ .++..+...
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~ 434 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434 (592)
T ss_dssp STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH
T ss_pred cccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh
Confidence 5556666665544 4777777777443 677766666654 7777777775 335554 356666666
Q ss_pred CCCccEEEccCCC-CCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHH
Q 007372 437 NLPIMNLCLRGCK-RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL 515 (606)
Q Consensus 437 ~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 515 (606)
+++|++|+++.|. .+++.++..+. ..+++|++|++++| .+++.++..+..+|++|++|++++|. +++.++..+
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~----~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~ 508 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIG----QYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAA 508 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHH----HSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHH
T ss_pred CCCCCEEEEecCCCCccHHHHHHHH----HhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHH
Confidence 7777777776655 36666666665 45677777777776 57776766666677777777777777 777766666
Q ss_pred HhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeece
Q 007372 516 ARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQT 563 (606)
Q Consensus 516 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~ 563 (606)
.. .+++|++|++++|. +++.++..+. ..+|.|+...+..+
T Consensus 509 ~~------~l~~L~~L~ls~n~-it~~~~~~l~-~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 509 VT------KLPSLRYLWVQGYR-ASMTGQDLMQ-MARPYWNIELIPSR 548 (592)
T ss_dssp HH------HCSSCCEEEEESCB-CCTTCTTGGG-GCCTTEEEEEECCC
T ss_pred HH------hcCccCeeECcCCc-CCHHHHHHHH-HhCCCcEEEEecCc
Confidence 55 56777777777774 7776666554 45666666655544
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1e-31 Score=286.57 Aligned_cols=437 Identities=21% Similarity=0.254 Sum_probs=296.2
Q ss_pred ccCCCCceeeecCCCC--------------ChhHHHHHHhhCcccCceecccCCCChhhhhhhh--cCCcceEeccCCCC
Q 007372 39 QALPSLSSLHLSTISP--------------DGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL--TPRIRELNLWCCSS 102 (606)
Q Consensus 39 ~~~~~l~~L~l~~~~~--------------~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~--~~~L~~L~l~~~~~ 102 (606)
..+++++.|+++++.. ..+++..+...+++|++|+++++.+++..+..+. +++|++|++++|..
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 3468899999998641 1345777788899999999999999998888774 69999999999988
Q ss_pred CcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEe
Q 007372 103 LSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLK 182 (606)
Q Consensus 103 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~ 182 (606)
++..++..+...|++|++|+++.+...... ...+..+...+++|+.|+++... ..+....+..+. ..+++|+.|+
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~--~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~-~~~~~L~~L~ 217 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVS--GHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLV-TRCPNLKSLK 217 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCC--GGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHH-HHCTTCCEEE
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcc--hHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHH-HhCCCCcEEe
Confidence 888888888889999999999776432211 12233555678899999999642 234444444442 2379999999
Q ss_pred ecCC-cccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCC--CCHHH---HHHHHhhCCCCCEE-EcCCCC
Q 007372 183 LQPV-LERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDV--ITDEL---LITITASLPFLVEL-DLEDRP 255 (606)
Q Consensus 183 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~---l~~l~~~~~~L~~L-~l~~~~ 255 (606)
++++ ....+...+.. +++|++|++..+. +.... +......+++|+.| .+..
T Consensus 218 L~~~~~~~~l~~~~~~--------------------~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~-- 275 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQR--------------------APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD-- 275 (594)
T ss_dssp CCTTSCHHHHHHHHHH--------------------CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT--
T ss_pred cCCCCcHHHHHHHHhc--------------------CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc--
Confidence 9987 33444444443 8999999987533 33322 22334678999999 3332
Q ss_pred CCCcccccccChhHHhhc-cCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHH
Q 007372 256 NTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL 334 (606)
Q Consensus 256 ~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 334 (606)
.....+..+ ..+++|++|++++|. +++.++..+...+++|++|++++| +++.++..+..
T Consensus 276 ---------~~~~~l~~~~~~~~~L~~L~L~~~~---------l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~ 335 (594)
T 2p1m_B 276 ---------AVPAYLPAVYSVCSRLTTLNLSYAT---------VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLAS 335 (594)
T ss_dssp ---------CCGGGGGGGHHHHTTCCEEECTTCC---------CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHH
T ss_pred ---------cchhhHHHHHHhhCCCCEEEccCCC---------CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHH
Confidence 222333333 367899999999874 778888888889999999999987 67888888888
Q ss_pred cCCCCcEEEEcCC--------CCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHH
Q 007372 335 SCHSLKKFEVRSA--------SFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCL 406 (606)
Q Consensus 335 ~~~~L~~L~l~~~--------~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 406 (606)
.+++|+.|++.++ ..+++..+..+...+ ++|+.|.+..+ .+++.++
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-------------------------~~L~~L~~~~~-~l~~~~~ 389 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-------------------------PKLESVLYFCR-QMTNAAL 389 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-------------------------TTCCEEEEEES-CCCHHHH
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc-------------------------hhHHHHHHhcC-CcCHHHH
Confidence 8999999999543 344444444444444 44555544332 4444444
Q ss_pred Hccc-CCCCCCEEEcc--C----CCCC----hHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEec
Q 007372 407 RSIS-CLRKLTALNLT--G----ADIT----DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDL 475 (606)
Q Consensus 407 ~~l~-~~~~L~~L~l~--~----~~i~----~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l 475 (606)
..+. .+++|++|+++ + +.++ +.++..+...+++|++|++++ .+++.++..+. ..+++|+.|++
T Consensus 390 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~----~~~~~L~~L~L 463 (594)
T 2p1m_B 390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG----TYAKKMEMLSV 463 (594)
T ss_dssp HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH----HHCTTCCEEEE
T ss_pred HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH----HhchhccEeec
Confidence 4443 34555555555 2 2444 555666666667777777755 46666666665 33667777777
Q ss_pred CCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCc
Q 007372 476 GYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGL 555 (606)
Q Consensus 476 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L 555 (606)
++| .+++.++..+...|++|++|++++|. +++.++..+.. .+++|++|++++|+ ++..++..+. ..+|+|
T Consensus 464 ~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~------~l~~L~~L~l~~~~-~~~~~~~~l~-~~lp~l 533 (594)
T 2p1m_B 464 AFA-GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANAS------KLETMRSLWMSSCS-VSFGACKLLG-QKMPKL 533 (594)
T ss_dssp ESC-CSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGG------GGGGSSEEEEESSC-CBHHHHHHHH-HHCTTE
T ss_pred cCC-CCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHH------hCCCCCEEeeeCCC-CCHHHHHHHH-HhCCCC
Confidence 776 56777776666667777777777776 56666665554 56677777777774 5666666653 346666
Q ss_pred eEEEeecee
Q 007372 556 HWLGIGQTR 564 (606)
Q Consensus 556 ~~L~l~~~~ 564 (606)
+...+..+.
T Consensus 534 ~i~~~~~~~ 542 (594)
T 2p1m_B 534 NVEVIDERG 542 (594)
T ss_dssp EEEEECSSS
T ss_pred EEEEecCCC
Confidence 665555443
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1e-31 Score=286.42 Aligned_cols=438 Identities=17% Similarity=0.139 Sum_probs=342.8
Q ss_pred ccCCCCceeeecCCC--------------CChhHHHHHHhhCcccCceecccCCCChhhhhhhh--cCC-cceEeccCCC
Q 007372 39 QALPSLSSLHLSTIS--------------PDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL--TPR-IRELNLWCCS 101 (606)
Q Consensus 39 ~~~~~l~~L~l~~~~--------------~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~--~~~-L~~L~l~~~~ 101 (606)
..++++++|+++++. ....++..+...+++|++|+++++.+++..+..+. +++ |++|++++|.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 357889999997643 23356788887899999999999999988887776 345 9999999998
Q ss_pred CCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEE
Q 007372 102 SLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSL 181 (606)
Q Consensus 102 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L 181 (606)
.++..++..+...|++|++|+++.+..... ....+..++..+++|+.|+++.+.. ..+....+..+ ...+++|+.|
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~~~l~~~-~~~~~~L~~L 225 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEK--DGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETI-ARNCRSLVSV 225 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECC--CSHHHHHHHHHCCCCCEEECTTCCC-SSCCHHHHHHH-HHHCTTCCEE
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCc--chhHHHHHHhcCCCccEEEeeccCC-CccCHHHHHHH-HhhCCCCcEE
Confidence 888888888888999999999987743221 1223567888999999999986431 11122333333 2347999999
Q ss_pred eecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCH--HHHHHHHhhCCCCCEEEcCCCCCCCc
Q 007372 182 KLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITD--ELLITITASLPFLVELDLEDRPNTEP 259 (606)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~l~~l~~~~~~L~~L~l~~~~~~~~ 259 (606)
+++++....+...+.. +++|++|+++...... .........+++|+.|++.++..
T Consensus 226 ~L~~~~~~~l~~~~~~--------------------~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--- 282 (592)
T 3ogk_B 226 KVGDFEILELVGFFKA--------------------AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP--- 282 (592)
T ss_dssp ECSSCBGGGGHHHHHH--------------------CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT---
T ss_pred eccCccHHHHHHHHhh--------------------hhHHHhhcccccccccchHHHHHHhhccccccccCccccch---
Confidence 9999877777766655 8999999997422110 01111224578999999987421
Q ss_pred ccccccChhHH-hhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCC
Q 007372 260 LARLDLTSSGL-QSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHS 338 (606)
Q Consensus 260 ~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 338 (606)
..+ ..+..+++|++|++++|. +++..+..+...+++|++|++++ .+++.++..+...+++
T Consensus 283 --------~~l~~~~~~~~~L~~L~Ls~~~---------l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 283 --------NEMPILFPFAAQIRKLDLLYAL---------LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp --------TTGGGGGGGGGGCCEEEETTCC---------CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTT
T ss_pred --------hHHHHHHhhcCCCcEEecCCCc---------CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCC
Confidence 112 224578899999999874 77888877778999999999983 6788888888889999
Q ss_pred CcEEEEcC----------CCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcC-CCCCcEEEccC---CCCCChH
Q 007372 339 LKKFEVRS----------ASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLAS-SRNLEVLDLGG---CKSIADT 404 (606)
Q Consensus 339 L~~L~l~~----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~---~~~~~~~ 404 (606)
|++|++++ +..+++..+..+...+++|++|++.. ..+++..+..+.. +++|+.|++++ |..+++.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 99999995 78889988888888899999999944 4489988888885 99999999973 4467652
Q ss_pred ----HHHc-ccCCCCCCEEEccCC--CCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCC
Q 007372 405 ----CLRS-ISCLRKLTALNLTGA--DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGY 477 (606)
Q Consensus 405 ----~~~~-l~~~~~L~~L~l~~~--~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~ 477 (606)
++.. +..+++|++|+++.| .+++.++..+...+++|++|++++|. +++.++..+. ..+++|+.|++++
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~----~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFS----RGCPNLQKLEMRG 497 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHH----TCCTTCCEEEEES
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHH----hcCcccCeeeccC
Confidence 3433 457999999999876 49999999998889999999999987 9988888877 6789999999999
Q ss_pred CCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCC
Q 007372 478 MPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 536 (606)
Q Consensus 478 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c 536 (606)
|. +++.++..+...+++|++|++++|. +++.+++.+.. .+|.+....+...
T Consensus 498 n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~------~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 498 CC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQM------ARPYWNIELIPSR 548 (592)
T ss_dssp CC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGG------CCTTEEEEEECCC
T ss_pred CC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHH------hCCCcEEEEecCc
Confidence 95 8998888888899999999999998 99988888887 6788877777654
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.6e-29 Score=259.24 Aligned_cols=214 Identities=21% Similarity=0.273 Sum_probs=133.8
Q ss_pred CCCccEEEccCCCCCCHHHHHHhc-----CCCCCcEEEccCCCCCChHHHHc----ccCCCCCCEEEccCCCCChHHHHH
Q 007372 362 PCALVEVRLLWCRLITSETVKKLA-----SSRNLEVLDLGGCKSIADTCLRS----ISCLRKLTALNLTGADITDSGLSI 432 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~i~~~~~~~ 432 (606)
+++|++|++++|. +++.++..+. .+++|++|++++| .+++.+... +..+++|++|++++|.+++.+...
T Consensus 226 ~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 226 KASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp CTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred CCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 4445555555443 4444433322 3667777777776 666654332 335677777777777777766655
Q ss_pred HHh----cCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHc----CCCCcEEEecCC
Q 007372 433 LAQ----GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA----GIGIIDLCVRSC 504 (606)
Q Consensus 433 l~~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~ 504 (606)
+.. ..++|++|++++|. +++.+...+... ...+++|++|++++| .+++.++..+.+. +++|++|++++|
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCS-FTAACCSHFSSV-LAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHH-HHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhccCCccceeeEcCCCC-CchHHHHHHHHH-HhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 544 23578888888776 665543333210 024678888888887 7777777666543 468888888888
Q ss_pred CCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhc---CCCCCceEEEeeceeccCCChhHHHHHhhcCC
Q 007372 505 FYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR---PSFRGLHWLGIGQTRLASKGNPVITEIHNERP 581 (606)
Q Consensus 505 ~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 581 (606)
. +++.++..++..+. .+++|++|++++| .+++.++..+.. ...++|+.|.+.++.......+.++.+...+|
T Consensus 381 ~-i~~~~~~~l~~~l~---~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p 455 (461)
T 1z7x_W 381 D-VSDSSCSSLAATLL---ANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP 455 (461)
T ss_dssp C-CCHHHHHHHHHHHH---HCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCT
T ss_pred C-CChhhHHHHHHHHH---hCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCC
Confidence 6 88766555554332 4788888888888 477776665531 22346888888777655444456667777778
Q ss_pred ceEE
Q 007372 582 WLTF 585 (606)
Q Consensus 582 ~l~~ 585 (606)
.+++
T Consensus 456 ~l~i 459 (461)
T 1z7x_W 456 SLRV 459 (461)
T ss_dssp TSEE
T ss_pred CcEe
Confidence 7764
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.3e-27 Score=243.50 Aligned_cols=409 Identities=20% Similarity=0.246 Sum_probs=229.9
Q ss_pred CCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-----cCCcceEeccCCCCCcHHHHHHHhhcC
Q 007372 41 LPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-----TPRIRELNLWCCSSLSYQILASIGHNC 115 (606)
Q Consensus 41 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-----~~~L~~L~l~~~~~~~~~~l~~l~~~~ 115 (606)
.+++++|+++++.+....+..++..+++|++|+++++.+++.....+. .++|++|+++++ .+++.+...+...+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH
Confidence 356778888888888777777677788888888888888876543333 378888888876 46666666665556
Q ss_pred C----CcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhh---hcccceeEEeecCCcc
Q 007372 116 P----NLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIF---FLPSTIKSLKLQPVLE 188 (606)
Q Consensus 116 ~----~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~---~~~~~L~~L~l~~~~~ 188 (606)
+ +|++|+++.+.... .....+...+..+++|++|+++.+. +.......+.. ...++|++|+++++
T Consensus 81 ~~~~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~Ls~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n-- 152 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTG--AGCGVLSSTLRTLPTLQELHLSDNL----LGDAGLQLLCEGLLDPQCRLEKLQLEYC-- 152 (461)
T ss_dssp CSTTCCCCEEECTTSCCBG--GGHHHHHHHTTSCTTCCEEECCSSB----CHHHHHHHHHHHHTSTTCCCCEEECTTS--
T ss_pred hhCCCceeEEEccCCCCCH--HHHHHHHHHHccCCceeEEECCCCc----CchHHHHHHHHHHhcCCCcceEEECCCC--
Confidence 6 68888887663211 1113444556677778888877532 32222222211 11234555555444
Q ss_pred cchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHH---HHHHHhhCCCCCEEEcCCCCCCCccccccc
Q 007372 189 RDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDEL---LITITASLPFLVELDLEDRPNTEPLARLDL 265 (606)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 265 (606)
.+++.. +......+++|++|++++| .+
T Consensus 153 -----------------------------------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n---------~i 182 (461)
T 1z7x_W 153 -----------------------------------------SLSAASCEPLASVLRAKPDFKELTVSNN---------DI 182 (461)
T ss_dssp -----------------------------------------CCBGGGHHHHHHHHHHCTTCCEEECCSS---------BC
T ss_pred -----------------------------------------CCCHHHHHHHHHHHhhCCCCCEEECcCC---------Cc
Confidence 444322 1222223445555555443 12
Q ss_pred ChhHHhhcc-----CCCCccEEEeccccccCCCCccccChHHH---HHHHhcCCCccEEEcCCCCCCCHHHHHHHHH---
Q 007372 266 TSSGLQSLG-----SCHHLTGLSLTRCRHNHQGTFKRVNDMGM---FLLSEGCKGLESVRLGGFSKVSDAGFAAILL--- 334 (606)
Q Consensus 266 ~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--- 334 (606)
++.++..+. ..++|++|++++|. +++.+. ......+++|++|+++++ .+++.++..+..
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~---------l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCG---------VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLL 252 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSC---------CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCC---------CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHh
Confidence 222222221 23355555555442 333222 222224455555555555 444444433322
Q ss_pred -cCCCCcEEEEcCCCCCCHHH---HHHHHcCCCCccEEEccCCCCCCHHHHHHhc-----CCCCCcEEEccCCCCCChHH
Q 007372 335 -SCHSLKKFEVRSASFLSDLA---FHDLTGVPCALVEVRLLWCRLITSETVKKLA-----SSRNLEVLDLGGCKSIADTC 405 (606)
Q Consensus 335 -~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~ 405 (606)
.+++|+.|++++|. ++... +......+++|++|++++|. +++.+...+. ..++|++|++++| .+++.+
T Consensus 253 ~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~ 329 (461)
T 1z7x_W 253 HPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSC-SFTAAC 329 (461)
T ss_dssp STTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGG
T ss_pred cCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCC-CCchHH
Confidence 24556666665552 34433 22222345666666666665 5555444443 2367788888777 566554
Q ss_pred HH----cccCCCCCCEEEccCCCCChHHHHHHHhc----CCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCC
Q 007372 406 LR----SISCLRKLTALNLTGADITDSGLSILAQG----NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGY 477 (606)
Q Consensus 406 ~~----~l~~~~~L~~L~l~~~~i~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~ 477 (606)
.. .+..+++|++|++++|.+++.+...+... .++|++|++++|. +++.++..+..+. ..+++|++|++++
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l-~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATL-LANHSLRELDLSN 407 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH-HHCCCCCEEECCS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHH-HhCCCccEEECCC
Confidence 32 33466788888888887777766655542 5678888888875 7765544433111 1467888888888
Q ss_pred CCCCCHHHHHHHHHcCC----CCcEEEecCCCCCCH---HHHHHHHhhCCCcccCCCCCEE
Q 007372 478 MPGISDDGILTIAAAGI----GIIDLCVRSCFYVTD---ASVEALARKQPDQEKSKQLRRL 531 (606)
Q Consensus 478 ~~~l~~~~~~~l~~~~~----~L~~L~l~~~~~l~~---~~~~~l~~~~~~~~~~~~L~~L 531 (606)
| .+++.++..+.+.++ .|+.|.+.++. ++. ..++.+.. ..|.|+.+
T Consensus 408 N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~-~~~~~~~~l~~l~~------~~p~l~i~ 460 (461)
T 1z7x_W 408 N-CLGDAGILQLVESVRQPGCLLEQLVLYDIY-WSEEMEDRLQALEK------DKPSLRVI 460 (461)
T ss_dssp S-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC-CCHHHHHHHHHHHH------HCTTSEEE
T ss_pred C-CCCHHHHHHHHHHhccCCcchhheeecccc-cCHHHHHHHHHHhc------cCCCcEee
Confidence 7 778777777765543 48888887766 443 33444444 46666654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=7.9e-31 Score=280.18 Aligned_cols=495 Identities=15% Similarity=0.059 Sum_probs=307.3
Q ss_pred cccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCC
Q 007372 38 SQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCP 116 (606)
Q Consensus 38 ~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 116 (606)
....+.++.|+++++.+.... +..+..+++|++|+++++.++......+. .++|++|++++|.-.. .. +.....++
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~~~~~~l~ 105 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MA-ETALSGPK 105 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE-EC-TTTTSSCT
T ss_pred CCCCCcCcEEEccCCccCcCC-hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc-cC-hhhhcccc
Confidence 446678999999999876532 22344589999999999998876666665 5999999999874322 11 11125789
Q ss_pred CcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccch-HHHH
Q 007372 117 NLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDA-FFLI 195 (606)
Q Consensus 117 ~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~-~~~~ 195 (606)
+|++|+++.+....... ..+..+++|++|+++++. +.......+ ..+++|+.|+++++..... ...+
T Consensus 106 ~L~~L~L~~n~i~~l~~------~~~~~l~~L~~L~L~~n~----l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDF------IPLHNQKTLESLYLGSNH----ISSIKLPKG--FPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp TCCEEECTTSCCSCGGG------SCCTTCTTCCEEECCSSC----CCCCCCCTT--CCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccEeeccccCcccCCc------chhccCCcccEEECCCCc----ccccCcccc--cCCcccCEEEcccCcccccChhhh
Confidence 99999997664322100 114578899999999743 222121222 1258999999998765544 2222
Q ss_pred HH-h-----hcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHH-------------------------hhC-
Q 007372 196 RR-I-----GRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITIT-------------------------ASL- 243 (606)
Q Consensus 196 ~~-~-----~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~-------------------------~~~- 243 (606)
.. . .....+....+..+..+ ...+|++|+++++......+..+. ..+
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 22 0 01111111111111111 123455555544321111111100 000
Q ss_pred -CCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCC
Q 007372 244 -PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 322 (606)
Q Consensus 244 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 322 (606)
.+|+.|+++++.. +......+..+++|++|+++++... .+.. -...+++|++|+++++
T Consensus 253 ~~~L~~L~l~~n~l---------~~~~~~~~~~l~~L~~L~l~~n~l~------~lp~-----~l~~l~~L~~L~l~~n- 311 (606)
T 3t6q_A 253 EMSVESINLQKHYF---------FNISSNTFHCFSGLQELDLTATHLS------ELPS-----GLVGLSTLKKLVLSAN- 311 (606)
T ss_dssp GSEEEEEECTTCCC---------SSCCTTTTTTCTTCSEEECTTSCCS------CCCS-----SCCSCTTCCEEECTTC-
T ss_pred cCceeEEEeecCcc---------CccCHHHhccccCCCEEeccCCccC------CCCh-----hhcccccCCEEECccC-
Confidence 1344555555422 1112223567788999999887531 1111 0135688999999988
Q ss_pred CCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH--HHHhcCCCCCcEEEccCCCC
Q 007372 323 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET--VKKLASSRNLEVLDLGGCKS 400 (606)
Q Consensus 323 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~L~~L~l~~~~~ 400 (606)
.++.... ..+..+++|+.|+++++...... .......+++|++|++++|. +.... ...+..+++|++|++++| .
T Consensus 312 ~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~ 387 (606)
T 3t6q_A 312 KFENLCQ-ISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYN-E 387 (606)
T ss_dssp CCSBGGG-GCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSC-S
T ss_pred CcCcCch-hhhhccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCC-c
Confidence 4443211 22346899999999887532110 01123467899999999987 55433 345667899999999998 6
Q ss_pred CChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCC
Q 007372 401 IADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPG 480 (606)
Q Consensus 401 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 480 (606)
+.+.....+..+++|++|++++|.++..........+++|++|++++|. ++......+. .+++|++|++++| .
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-----~l~~L~~L~L~~n-~ 460 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFD-----GLPALQHLNLQGN-H 460 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTT-----TCTTCCEEECTTC-B
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHh-----CCCCCCEEECCCC-C
Confidence 6655556677889999999999976544332333457899999999987 4433323233 6889999999998 5
Q ss_pred CCHHHHH--HHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEE
Q 007372 481 ISDDGIL--TIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWL 558 (606)
Q Consensus 481 l~~~~~~--~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L 558 (606)
+++..+. .....+++|++|++++|. ++......+. .+++|++|++++| .++......+. .+++| .|
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~l~--~l~~L-~L 528 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-------SLKMMNHVDLSHN-RLTSSSIEALS--HLKGI-YL 528 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCCGGGGGGGT--TCCSC-EE
T ss_pred CCccccccchhhccCCCccEEECCCCc-cCccChhhhc-------cccCCCEEECCCC-ccCcCChhHhC--ccccc-EE
Confidence 5442111 112567999999999997 6643333333 5899999999999 58776665654 68899 99
Q ss_pred EeeceeccCCChhHHHHHhhcCCceE-Eeeccccccccc
Q 007372 559 GIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 596 (606)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~~ 596 (606)
++++|++.......+..+ +.++ +++.||++.|..
T Consensus 529 ~L~~N~l~~~~~~~~~~l----~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 529 NLASNHISIILPSLLPIL----SQQRTINLRQNPLDCTC 563 (606)
T ss_dssp ECCSSCCCCCCGGGHHHH----HTSSEEECTTCCEECSG
T ss_pred ECcCCcccccCHhhcccC----CCCCEEeCCCCCccccC
Confidence 999999887644444444 3444 999999999874
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.5e-30 Score=278.11 Aligned_cols=495 Identities=13% Similarity=0.044 Sum_probs=314.9
Q ss_pred cccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCC
Q 007372 38 SQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCP 116 (606)
Q Consensus 38 ~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 116 (606)
....+.+++|+++++.+...... .+..+++|++|+++++.++......+. .++|++|++++|. ++... +.....++
T Consensus 28 ~~~~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~-p~~~~~l~ 104 (606)
T 3vq2_A 28 DDIPSSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFS-PGSFSGLT 104 (606)
T ss_dssp TTSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCC-TTSSTTCT
T ss_pred CCCCCCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccC-hhhcCCcc
Confidence 34567899999999887652222 334589999999999988876665555 5899999999874 32211 11225789
Q ss_pred CcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccch-----
Q 007372 117 NLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDA----- 191 (606)
Q Consensus 117 ~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~----- 191 (606)
+|++|+++.+....... ..+..+++|++|+++.+.......+..+.. +++|+.|+++++.....
T Consensus 105 ~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 105 SLENLVAVETKLASLES------FPIGQLITLKKLNVAHNFIHSCKLPAYFSN-----LTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp TCCEEECTTSCCCCSSS------SCCTTCTTCCEEECCSSCCCCCCCCGGGGT-----CTTCCEEECCSSCCCEECTTTT
T ss_pred cCCEEEccCCccccccc------cccCCCCCCCEEeCCCCcccceechHhHhh-----cCCCCEEEccCCcceecChhhh
Confidence 99999997664322110 114578899999998653100011233333 48899999988754332
Q ss_pred HHHHHHh----hcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccc-----
Q 007372 192 FFLIRRI----GRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLAR----- 262 (606)
Q Consensus 192 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~----- 262 (606)
..+.... ...........+....+. ..+|++|+++++.+.....+.....++.|+.+++..........+
T Consensus 174 ~~l~~L~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp HHHHHCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhhccccccceeeccCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 1111100 111111111122222233 348999999999888767777778889998877643221110000
Q ss_pred -------------------cccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCC
Q 007372 263 -------------------LDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK 323 (606)
Q Consensus 263 -------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 323 (606)
..+.... ..+..+++|+.|++.++... .+. ....+++|+.|++++| .
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~------~l~------~l~~~~~L~~L~l~~n-~ 318 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSIK------YLE------DVPKHFKWQSLSIIRC-Q 318 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGG-GSCGGGTTCSEEEEESCCCC------CCC------CCCTTCCCSEEEEESC-C
T ss_pred HHhhhhhhccHhheeccccccccccc-cccccCCCCCEEEecCccch------hhh------hccccccCCEEEcccc-c
Confidence 1112111 12556788999999886531 111 1125678999999988 3
Q ss_pred CCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH--HHHhcCCCCCcEEEccCCCCC
Q 007372 324 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET--VKKLASSRNLEVLDLGGCKSI 401 (606)
Q Consensus 324 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~L~~L~l~~~~~~ 401 (606)
++. +..+ .+++|+.|+++++...... ....+++|++|++++|. ++... ...+..+++|+.|++++| .+
T Consensus 319 l~~--lp~~--~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l 388 (606)
T 3vq2_A 319 LKQ--FPTL--DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GA 388 (606)
T ss_dssp CSS--CCCC--CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SE
T ss_pred Ccc--cccC--CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-cc
Confidence 332 2233 6889999999988543322 22367899999999886 44332 345667899999999998 45
Q ss_pred ChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCC
Q 007372 402 ADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGI 481 (606)
Q Consensus 402 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l 481 (606)
+... ..+..+++|+.|++++|.++..........+++|++|++++|. ++......+ ..+++|++|++++| .+
T Consensus 389 ~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l 460 (606)
T 3vq2_A 389 IIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIF-----LGLTSLNTLKMAGN-SF 460 (606)
T ss_dssp EEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCTTTT-----TTCTTCCEEECTTC-EE
T ss_pred ccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC-CCccchhhh-----cCCCCCCEEECCCC-cC
Confidence 5433 5667889999999999976554322233458899999999987 443222223 36889999999998 55
Q ss_pred CHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEee
Q 007372 482 SDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIG 561 (606)
Q Consensus 482 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~ 561 (606)
++..+......+++|++|++++|. ++......+. .+++|++|++++| .++......+ ..+++|+.|+++
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~l~ 529 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD-------TLHRLQLLNMSHN-NLLFLDSSHY--NQLYSLSTLDCS 529 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCSCEEGGGT--TTCTTCCEEECT
T ss_pred CCcchHHhhccCCCCCEEECCCCc-CCccChhhhc-------ccccCCEEECCCC-cCCCcCHHHc--cCCCcCCEEECC
Confidence 542122222467999999999997 6643333333 5899999999999 4766444444 368899999999
Q ss_pred ceeccCCChhHHHHHhhcCC-ceE-Eeecccccccc
Q 007372 562 QTRLASKGNPVITEIHNERP-WLT-FCLDGCEIGCH 595 (606)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~-~l~-~~~~g~~~~~~ 595 (606)
+|++... +.. + ...| .++ +++.||++.|.
T Consensus 530 ~N~l~~~-p~~---~-~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 530 FNRIETS-KGI---L-QHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TSCCCCE-ESC---G-GGSCTTCCEEECCSCCCCCS
T ss_pred CCcCccc-CHh---H-hhhcccCcEEEccCCCcccC
Confidence 9997743 221 3 3344 355 99999999987
No 9
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=5.4e-26 Score=223.90 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=78.8
Q ss_pred CCCchhhhHHHHHHhcCchhhhhhHHhhhHHHHhhhccccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCC
Q 007372 1 METVPSAVLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQ 80 (606)
Q Consensus 1 i~~LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~ 80 (606)
+.+||+|++. +||+||+.+|++++++|||+|+.++. ....++.++++++.+.+..+..+.. ++++.|+++++.++
T Consensus 9 ~~~LP~eil~-~If~~L~~~d~~~~~~vc~~W~~~~~--~~~~~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n~l~ 83 (336)
T 2ast_B 9 WDSLPDELLL-GIFSCLCLPELLKVSGVCKRWYRLAS--DESLWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMD 83 (336)
T ss_dssp SSSSCHHHHH-HHHTTSCHHHHHHTTSSCHHHHHHHT--CSTTSSEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEEC
T ss_pred hhhCCHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHhc--CchhheeeccccccCCHHHHHhhhh--ccceEEEcCCcccc
Confidence 4689999999 79999999999999999999999872 1345778999988877544433322 68888888877766
Q ss_pred hhhhhhhhcCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeec
Q 007372 81 DHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLE 124 (606)
Q Consensus 81 ~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~ 124 (606)
......+..++|++|++++|. ++..++..+...+++|++|+++
T Consensus 84 ~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 84 QPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECT
T ss_pred ccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCc
Confidence 544333334555555555542 3333333333444444444443
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.5e-29 Score=274.05 Aligned_cols=216 Identities=16% Similarity=0.038 Sum_probs=124.7
Q ss_pred CCCccEEEccCCCCCCH-HHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHH-HHHHHhcCCC
Q 007372 362 PCALVEVRLLWCRLITS-ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG-LSILAQGNLP 439 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~ 439 (606)
+++|+.|+++++. +.. .....+.++++|+.|++++| .+.......+..+++|+.|++++|.++..+ .......+++
T Consensus 404 l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 404 LGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp CTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred CCCCCEEeCCCCc-CccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 4555555555544 211 11122344555555555555 333333334445666666666666543211 1111234677
Q ss_pred ccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHH-------HHHcCCCCcEEEecCCCCCCHHHH
Q 007372 440 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILT-------IAAAGIGIIDLCVRSCFYVTDASV 512 (606)
Q Consensus 440 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------l~~~~~~L~~L~l~~~~~l~~~~~ 512 (606)
|+.|++++|. ++......+ ..+++|+.|++++| .++...... ...++++|++|++++|. ++....
T Consensus 482 L~~L~Ls~N~-l~~i~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~ 553 (680)
T 1ziw_A 482 LTILDLSNNN-IANINDDML-----EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPV 553 (680)
T ss_dssp CCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CCEEECCCCC-CCcCChhhh-----ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCH
Confidence 8888888776 443222222 36778888888887 554321100 12456888889988886 553221
Q ss_pred HHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccc
Q 007372 513 EALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCE 591 (606)
Q Consensus 513 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~ 591 (606)
..+. .+++|+.|++++| .++......+ ..+++|+.|++++|++.......+.. ..+.++ +++.||+
T Consensus 554 ~~~~-------~l~~L~~L~Ls~N-~l~~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 554 EVFK-------DLFELKIIDLGLN-NLNTLPASVF--NNQVSLKSLNLQKNLITSVEKKVFGP---AFRNLTELDMRFNP 620 (680)
T ss_dssp TTTT-------TCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECTTSCCCBCCHHHHHH---HHTTCSEEECTTCC
T ss_pred HHcc-------cccCcceeECCCC-CCCcCCHhHh--CCCCCCCEEECCCCcCCccChhHhcc---cccccCEEEccCCC
Confidence 1222 5889999999988 5765443333 35789999999999988764333331 234555 9999999
Q ss_pred ccccc---ceec
Q 007372 592 IGCHD---GWQF 600 (606)
Q Consensus 592 ~~~~~---~~~~ 600 (606)
+.|.. .|+.
T Consensus 621 ~~c~c~~~~~~~ 632 (680)
T 1ziw_A 621 FDCTCESIAWFV 632 (680)
T ss_dssp CCBCCCCCSSEE
T ss_pred cccCCccHHHHH
Confidence 99984 5553
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.2e-27 Score=252.49 Aligned_cols=480 Identities=15% Similarity=0.081 Sum_probs=302.2
Q ss_pred HhhhccccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHH
Q 007372 33 RFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASI 111 (606)
Q Consensus 33 ~~~~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l 111 (606)
..++ ...++.+++|+++++.+...... .+..+++|++|+++++.++......+. .++|++|++++|. ++......+
T Consensus 18 ~~ip-~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 94 (549)
T 2z81_A 18 TSIP-SGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWF 94 (549)
T ss_dssp SSCC-SCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHH
T ss_pred cccc-ccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHh
Confidence 3444 45668999999999987653222 234589999999999999887666565 4999999999884 332222223
Q ss_pred hhcCCCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccch
Q 007372 112 GHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDA 191 (606)
Q Consensus 112 ~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 191 (606)
..+++|++|+++.+......+. ..+..+++|+.|+++.+.....+....+.. +++|+.|+++++.....
T Consensus 95 -~~l~~L~~L~Ls~n~l~~~~~~-----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-----l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 95 -GPLSSLKYLNLMGNPYQTLGVT-----SLFPNLTNLQTLRIGNVETFSEIRRIDFAG-----LTSLNELEIKALSLRNY 163 (549)
T ss_dssp -TTCTTCCEEECTTCCCSSSCSS-----CSCTTCTTCCEEEEEESSSCCEECTTTTTT-----CCEEEEEEEEETTCCEE
T ss_pred -ccCCCCcEEECCCCcccccchh-----hhhhccCCccEEECCCCccccccCHhhhhc-----ccccCeeeccCCccccc
Confidence 6899999999987754321111 235678999999999753112222223333 48999999998754321
Q ss_pred HHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHh
Q 007372 192 FFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQ 271 (606)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 271 (606)
.+..+..+++|++|+++.+.... ....+...+++|++|++++|..... ......
T Consensus 164 -------------------~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~ 217 (549)
T 2z81_A 164 -------------------QSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARF------QFSPLP 217 (549)
T ss_dssp -------------------CTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTC------CCCCCS
T ss_pred -------------------ChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccc------cccccc
Confidence 22344568899999999877654 3344445689999999999754221 000011
Q ss_pred hccCCCCccEEEeccccccCCCCccccChHHHHHHH---hcCCCccEEEcCCCCCCCHHHH----HHHHHcCCCCcEEEE
Q 007372 272 SLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLS---EGCKGLESVRLGGFSKVSDAGF----AAILLSCHSLKKFEV 344 (606)
Q Consensus 272 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l 344 (606)
....+++|++|++.++. +++.....+. ..+++|+.+++++|.......+ ......+++|+.|.+
T Consensus 218 ~~~~~~~L~~L~l~~n~---------l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 218 VDEVSSPMKKLAFRGSV---------LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp SCCCCCCCCEEEEESCE---------EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred hhhhhhcccceeccccc---------cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 12356789999998764 5665555543 4567889998887721110000 001234678888888
Q ss_pred cCCCCCCHH---HHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHH---HcccCCCCCCEE
Q 007372 345 RSASFLSDL---AFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCL---RSISCLRKLTAL 418 (606)
Q Consensus 345 ~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L 418 (606)
.++..-... .+..+....++|+.|+++++. +.......+..+++|+.|++++| .+.+... ..+..+++|+.|
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEE
Confidence 776421110 011122235688888888876 44333333346788888888887 6665443 235677888888
Q ss_pred EccCCCCChHHH-HHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCc
Q 007372 419 NLTGADITDSGL-SILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGII 497 (606)
Q Consensus 419 ~l~~~~i~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 497 (606)
++++|.++.... ......+++|++|++++|. ++. +.... ..+++|++|++++| .++.... ...++|+
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~----~~~~~L~~L~Ls~N-~l~~l~~----~~~~~L~ 434 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHP--MPDSC----QWPEKMRFLNLSST-GIRVVKT----CIPQTLE 434 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCC--CCSCC----CCCTTCCEEECTTS-CCSCCCT----TSCTTCS
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCC-Ccc--CChhh----cccccccEEECCCC-Ccccccc----hhcCCce
Confidence 888888876542 2334567888888888885 442 11111 35678888888887 4542110 1125788
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHh
Q 007372 498 DLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIH 577 (606)
Q Consensus 498 ~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 577 (606)
+|++++|. ++.. .. .+++|++|++++| .++..+ .. ..+++|+.|++++|++..... +..
T Consensus 435 ~L~Ls~N~-l~~~-----~~------~l~~L~~L~Ls~N-~l~~ip--~~--~~l~~L~~L~Ls~N~l~~~~~----~~~ 493 (549)
T 2z81_A 435 VLDVSNNN-LDSF-----SL------FLPRLQELYISRN-KLKTLP--DA--SLFPVLLVMKISRNQLKSVPD----GIF 493 (549)
T ss_dssp EEECCSSC-CSCC-----CC------CCTTCCEEECCSS-CCSSCC--CG--GGCTTCCEEECCSSCCCCCCT----TGG
T ss_pred EEECCCCC-hhhh-----cc------cCChhcEEECCCC-ccCcCC--Cc--ccCccCCEEecCCCccCCcCH----HHH
Confidence 88888886 5531 12 5788888888888 465322 11 246788888888888765422 222
Q ss_pred hcCCceE-Eeeccccccccc
Q 007372 578 NERPWLT-FCLDGCEIGCHD 596 (606)
Q Consensus 578 ~~~~~l~-~~~~g~~~~~~~ 596 (606)
...+.++ +++.||++.|..
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCH
T ss_pred hcCcccCEEEecCCCccCCC
Confidence 3445565 888888888873
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5.5e-30 Score=279.64 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=79.7
Q ss_pred cCCCCceeeecCCCCChhHHH-HHHhhCcccCceecccCCCChhhhhhh--hcCCcceEeccCCCCCcHHH-HHHHhhcC
Q 007372 40 ALPSLSSLHLSTISPDGQTLI-HILGRCKALCSLTLNCLRLQDHSLCAF--LTPRIRELNLWCCSSLSYQI-LASIGHNC 115 (606)
Q Consensus 40 ~~~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~l~~~--~~~~L~~L~l~~~~~~~~~~-l~~l~~~~ 115 (606)
..+++++|+|+++.+...... .....+++|++|+++++.++......+ ..++|++|++++|.-..... .......+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 457788888888776532222 023448888888888877764333332 24888899988874322111 11123678
Q ss_pred CCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCccc
Q 007372 116 PNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLER 189 (606)
Q Consensus 116 ~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 189 (606)
++|++|+++.+...+. +. ...+++|++|+++.+. .......+. .+++|+.|+++++...
T Consensus 178 ~~L~~L~Ls~n~l~~~-~~-------~~~l~~L~~L~Ls~n~--l~~~~~~l~-----~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 178 GELKHLAISGNKISGD-VD-------VSRCVNLEFLDVSSNN--FSTGIPFLG-----DCSALQHLDISGNKLS 236 (768)
T ss_dssp TTCCEEECCSSEEESC-CB-------CTTCTTCCEEECCSSC--CCSCCCBCT-----TCCSCCEEECCSSCCC
T ss_pred CCCCEEECCCCccccc-CC-------cccCCcCCEEECcCCc--CCCCCcccc-----cCCCCCEEECcCCcCC
Confidence 8888888866643321 11 1467888888888643 111111122 3478888888877543
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1e-29 Score=271.64 Aligned_cols=473 Identities=16% Similarity=0.119 Sum_probs=286.2
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCCC
Q 007372 39 QALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCPN 117 (606)
Q Consensus 39 ~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 117 (606)
...+++++|+++++.+.... +..+..+++|++|+++++.++......+. .++|++|+++++.-.. ..... ...+++
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~-~~~l~~ 130 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIP-LHNQKT 130 (606)
T ss_dssp TTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSC-CTTCTT
T ss_pred ccCccceEEECCCCccceeC-hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc-CCcch-hccCCc
Confidence 34567888888887765421 22233477888888887777765544444 3777888877763222 11111 146777
Q ss_pred cceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhh--------------------hhcccc
Q 007372 118 LRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSII--------------------FFLPST 177 (606)
Q Consensus 118 L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~--------------------~~~~~~ 177 (606)
|++|+++.+......+. .+. .+++|+.|+++.+.. ....+..+..+. .....+
T Consensus 131 L~~L~L~~n~l~~~~~~-----~~~-~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLP-----KGF-PTEKLKVLDFQNNAI-HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203 (606)
T ss_dssp CCEEECCSSCCCCCCCC-----TTC-CCTTCCEEECCSSCC-CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred ccEEECCCCcccccCcc-----ccc-CCcccCEEEcccCcc-cccChhhhhhhcccceeEEecCCCccCccChhHhhhcc
Confidence 77777765533221111 111 256666666664320 011111111110 001134
Q ss_pred eeEEeecCCcccchHHHHHHhhcc---------cccccCcccccccccCC--CCccEEecccCCCCHHHHHHHHhhCCCC
Q 007372 178 IKSLKLQPVLERDAFFLIRRIGRN---------LMETVQPPILTSSYYSS--FNLRSLSLVLDVITDELLITITASLPFL 246 (606)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~l~~l~~~~~~L 246 (606)
|+.++++++. .....+...... ........+....+..+ .+|++|+++.+.+... ....+..+++|
T Consensus 204 L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L 280 (606)
T 3t6q_A 204 FQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-SSNTFHCFSGL 280 (606)
T ss_dssp EEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC-CTTTTTTCTTC
T ss_pred ccccccCCch--hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc-CHHHhccccCC
Confidence 5555554442 111111110000 00000001111112222 2789999998777652 22334568999
Q ss_pred CEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCH
Q 007372 247 VELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSD 326 (606)
Q Consensus 247 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 326 (606)
++|++++|... .++ ..+..+++|++|+++++. +..... .....+++|++|+++++. +..
T Consensus 281 ~~L~l~~n~l~------~lp----~~l~~l~~L~~L~l~~n~---------l~~~~~-~~~~~l~~L~~L~l~~n~-~~~ 339 (606)
T 3t6q_A 281 QELDLTATHLS------ELP----SGLVGLSTLKKLVLSANK---------FENLCQ-ISASNFPSLTHLSIKGNT-KRL 339 (606)
T ss_dssp SEEECTTSCCS------CCC----SSCCSCTTCCEEECTTCC---------CSBGGG-GCGGGCTTCSEEECCSCS-SCC
T ss_pred CEEeccCCccC------CCC----hhhcccccCCEEECccCC---------cCcCch-hhhhccCcCCEEECCCCC-ccc
Confidence 99999997542 122 236678999999999875 222111 112367999999999983 321
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHH
Q 007372 327 AGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCL 406 (606)
Q Consensus 327 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 406 (606)
......+..+++|+.|+++++..............+++|++|++++|. +.......+..+++|+.|++++| .+.....
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 417 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFT-RLKVKDA 417 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTC-CEECCTT
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCC-cCCCccc
Confidence 111112346899999999987632211112234568999999999987 55544556778999999999998 5554332
Q ss_pred -HcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHH---HHHHhhcCCCCCCCCEEecCCCCCCC
Q 007372 407 -RSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI---SHLLCVGGTISQSLTTLDLGYMPGIS 482 (606)
Q Consensus 407 -~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~~~~~L~~L~l~~~~~l~ 482 (606)
..+..+++|+.|++++|.++...... ...+++|++|++++|. +++..+ ..+ ..+++|+.|++++| .++
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~~-----~~l~~L~~L~Ls~n-~l~ 489 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGNH-FPKGNIQKTNSL-----QTLGRLEILVLSFC-DLS 489 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTT-TTTCTTCCEEECTTCB-CGGGEECSSCGG-----GGCTTCCEEECTTS-CCC
T ss_pred chhhhCcccCCEEECCCCccCCcCHHH-HhCCCCCCEEECCCCC-CCccccccchhh-----ccCCCccEEECCCC-ccC
Confidence 33678999999999999876543332 2358999999999997 543221 122 36899999999999 666
Q ss_pred HHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeec
Q 007372 483 DDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQ 562 (606)
Q Consensus 483 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~ 562 (606)
......+ ..+++|++|++++|. ++......+. .+++| +|++++| .++......+. .+++|+.|++++
T Consensus 490 ~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~l~-------~l~~L-~L~L~~N-~l~~~~~~~~~--~l~~L~~L~l~~ 556 (606)
T 3t6q_A 490 SIDQHAF-TSLKMMNHVDLSHNR-LTSSSIEALS-------HLKGI-YLNLASN-HISIILPSLLP--ILSQQRTINLRQ 556 (606)
T ss_dssp EECTTTT-TTCTTCCEEECCSSC-CCGGGGGGGT-------TCCSC-EEECCSS-CCCCCCGGGHH--HHHTSSEEECTT
T ss_pred ccChhhh-ccccCCCEEECCCCc-cCcCChhHhC-------ccccc-EEECcCC-cccccCHhhcc--cCCCCCEEeCCC
Confidence 5433334 467999999999997 8776655555 48899 9999999 46654433332 367999999999
Q ss_pred eeccCC
Q 007372 563 TRLASK 568 (606)
Q Consensus 563 ~~~~~~ 568 (606)
|++..+
T Consensus 557 N~~~c~ 562 (606)
T 3t6q_A 557 NPLDCT 562 (606)
T ss_dssp CCEECS
T ss_pred CCcccc
Confidence 998765
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=9.4e-31 Score=285.69 Aligned_cols=330 Identities=16% Similarity=0.125 Sum_probs=151.0
Q ss_pred ccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCC
Q 007372 215 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 294 (606)
Q Consensus 215 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 294 (606)
+.++++|++|+++++.+...... .+..+++|++|++++|...... + ...+++|++|+++++..
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~-----~------~~~l~~L~~L~L~~n~l----- 281 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPI-----P------PLPLKSLQYLSLAENKF----- 281 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESC-----C------CCCCTTCCEEECCSSEE-----
T ss_pred cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCcc-----C------ccccCCCCEEECcCCcc-----
Confidence 45678888888888777653333 3356788888888887432110 0 01456666666665531
Q ss_pred ccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 007372 295 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 374 (606)
Q Consensus 295 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 374 (606)
++.....+...+++|++|+++++ .++.. +...+..+++|+.|+++++..... ........+++|++|++++|.
T Consensus 282 ----~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~-ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 282 ----TGEIPDFLSGACDTLTGLDLSGN-HFYGA-VPPFFGSCSLLESLALSSNNFSGE-LPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ----EESCCCCSCTTCTTCSEEECCSS-EEEEC-CCGGGGGCTTCCEEECCSSEEEEE-CCHHHHTTCTTCCEEECCSSE
T ss_pred ----CCccCHHHHhhcCcCCEEECcCC-cCCCc-cchHHhcCCCccEEECCCCcccCc-CCHHHHhcCCCCCEEeCcCCc
Confidence 10000011112356666666665 22210 111123456666666665531100 001112345666666666654
Q ss_pred CCCHHHHHHhcCCC-CCcEEEccCCCCCChHHHHcccC--CCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 007372 375 LITSETVKKLASSR-NLEVLDLGGCKSIADTCLRSISC--LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRV 451 (606)
Q Consensus 375 ~l~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 451 (606)
+.+.....+..++ +|+.|++++| .+++.....+.. +++|+.|++++|.+++..... ...+++|++|++++|. +
T Consensus 355 -l~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~-l 430 (768)
T 3rgz_A 355 -FSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNY-L 430 (768)
T ss_dssp -EEECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSSE-E
T ss_pred -cCccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEECcCCc-c
Confidence 2211111222233 5556666555 333322222222 455666666665443221111 1235566666666654 3
Q ss_pred CHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEE
Q 007372 452 TDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRL 531 (606)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L 531 (606)
++.....+. .+++|+.|++++| .++......+ ..+++|++|++++|. ++......+. .+++|++|
T Consensus 431 ~~~~p~~l~-----~l~~L~~L~L~~n-~l~~~~p~~~-~~l~~L~~L~L~~N~-l~~~~p~~l~-------~l~~L~~L 495 (768)
T 3rgz_A 431 SGTIPSSLG-----SLSKLRDLKLWLN-MLEGEIPQEL-MYVKTLETLILDFND-LTGEIPSGLS-------NCTNLNWI 495 (768)
T ss_dssp ESCCCGGGG-----GCTTCCEEECCSS-CCCSCCCGGG-GGCTTCCEEECCSSC-CCSCCCGGGG-------GCTTCCEE
T ss_pred cCcccHHHh-----cCCCCCEEECCCC-cccCcCCHHH-cCCCCceEEEecCCc-ccCcCCHHHh-------cCCCCCEE
Confidence 221112222 3556666666655 3332222222 244566666666654 3322222222 35566666
Q ss_pred eccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeeccccccc
Q 007372 532 DLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGC 594 (606)
Q Consensus 532 ~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~ 594 (606)
++++|. ++......+. .+++|+.|++++|++....+ ......+.++ +++.+|.+.+
T Consensus 496 ~L~~N~-l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 496 SLSNNR-LTGEIPKWIG--RLENLAILKLSNNSFSGNIP----AELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp ECCSSC-CCSCCCGGGG--GCTTCCEEECCSSCCEEECC----GGGGGCTTCCEEECCSSEEES
T ss_pred EccCCc-cCCcCChHHh--cCCCCCEEECCCCcccCcCC----HHHcCCCCCCEEECCCCccCC
Confidence 666663 4322222222 35566666666665442211 1122334444 5555555543
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.9e-27 Score=257.43 Aligned_cols=519 Identities=14% Similarity=0.034 Sum_probs=235.7
Q ss_pred cccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCC
Q 007372 38 SQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCP 116 (606)
Q Consensus 38 ~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 116 (606)
....+++++|+++++.+..... ..+..+++|++|+++++.++......+. .++|++|+++++. ++.... .....++
T Consensus 21 ~~~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~-~~~~~l~ 97 (680)
T 1ziw_A 21 DDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSD-KTFAFCT 97 (680)
T ss_dssp SCSCTTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred cccCCCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccCh-hhhccCC
Confidence 3455788888888877654221 2234478888888888877766555554 4888888888763 221111 1124678
Q ss_pred CcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHH-HH
Q 007372 117 NLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFF-LI 195 (606)
Q Consensus 117 ~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~-~~ 195 (606)
+|++|+++.+....... ..+..+++|++|+++.+.. ....+..+ ..+++|+.|+++++....... .+
T Consensus 98 ~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKN------NPFVKQKNLITLDLSHNGL-SSTKLGTQ-----VQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp TCSEEECCSSCCCCCCS------CTTTTCTTCCEEECCSSCC-SCCCCCSS-----SCCTTCCEEECCSSCCCCBCHHHH
T ss_pred CCCEEECCCCccCccCh------hHccccCCCCEEECCCCcc-cccCchhh-----cccccCCEEEccCCcccccCHHHh
Confidence 88888886553321110 1234677888888875431 11111112 224677777777654433221 11
Q ss_pred HH------hhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHh--hCCCCCEEEcCCCCCCCcc--cc---
Q 007372 196 RR------IGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITA--SLPFLVELDLEDRPNTEPL--AR--- 262 (606)
Q Consensus 196 ~~------~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~--~~--- 262 (606)
.. ...........++.+..+..+++|+.|++..+.+.......+.. ..++|++|++++|...... ++
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 00 01111111111222333445566666666655554433333321 1356667776665332100 00
Q ss_pred ------------cccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHH---
Q 007372 263 ------------LDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDA--- 327 (606)
Q Consensus 263 ------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--- 327 (606)
+.++......+..+++|++|+++++. +...... ....+++|+.|+++++......
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---------l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~ 315 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN---------IQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLA 315 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC---------BSEECTT-TTTTCTTCCEEECTTCBCCC-----
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc---------cCccChh-hhcCCCCccEEeccchhhhcccccc
Confidence 00111111123344444444444432 1110000 0123455555555543111000
Q ss_pred HHHH----HHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCC-CCHHHHHHhc--CCCCCcEEEccCCCC
Q 007372 328 GFAA----ILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL-ITSETVKKLA--SSRNLEVLDLGGCKS 400 (606)
Q Consensus 328 ~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-l~~~~~~~l~--~~~~L~~L~l~~~~~ 400 (606)
.+.. .+..+++|+.|+++++.... . .......+++|++|++++|.. +.......+. ..++|+.|++++| .
T Consensus 316 ~lp~i~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~ 392 (680)
T 1ziw_A 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPG-I-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-K 392 (680)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSCCBCC-C-CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-C
T ss_pred cccccChhhcccCCCCCEEECCCCccCC-C-ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-C
Confidence 0000 12245566666665553111 0 011123455666666655420 0000000000 1123444444443 3
Q ss_pred CChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHH--------------------
Q 007372 401 IADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLL-------------------- 460 (606)
Q Consensus 401 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-------------------- 460 (606)
++......+..+++|+.|++++|.+++.........+++|++|++++|. ++......+.
T Consensus 393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhcccccccccc
Confidence 3332223344555555565555544321110111234455555554443 1110000000
Q ss_pred -hhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhC-CCcccCCCCCEEeccCCCC
Q 007372 461 -CVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ-PDQEKSKQLRRLDLCNCIG 538 (606)
Q Consensus 461 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~ 538 (606)
......+++|+.|++++| .++......+ .++++|++|++++|. ++......++... ...+.+++|+.|++++| .
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~ 547 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNN-NIANINDDML-EGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-G 547 (680)
T ss_dssp SSCTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-C
T ss_pred CCcccccCCCCCEEECCCC-CCCcCChhhh-ccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-C
Confidence 000125667777777776 4543222222 356778888887776 4432111110000 00115778888888887 4
Q ss_pred CCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 539 LSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 539 l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
++..+...+ ..+++|+.|++++|+++... .......+.++ +++.+|.+...
T Consensus 548 l~~i~~~~~--~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 548 FDEIPVEVF--KDLFELKIIDLGLNNLNTLP----ASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CCCCCTTTT--TTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECTTSCCCBC
T ss_pred CCCCCHHHc--ccccCcceeECCCCCCCcCC----HhHhCCCCCCCEEECCCCcCCcc
Confidence 654332223 35778888888888876541 12223445666 88888866554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1e-26 Score=245.29 Aligned_cols=450 Identities=14% Similarity=0.090 Sum_probs=300.0
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCCC
Q 007372 39 QALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCPN 117 (606)
Q Consensus 39 ~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 117 (606)
...+++++|+++++.+..... ..+..+++|++|+++++.++......+. .++|++|++++|.- +..........+++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTN 124 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC-SSSCSSCSCTTCTT
T ss_pred hcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc-cccchhhhhhccCC
Confidence 456899999999998765222 2334589999999999999987776565 59999999998843 21111112367899
Q ss_pred cceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHH
Q 007372 118 LRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRR 197 (606)
Q Consensus 118 L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~ 197 (606)
|++|+++.+..... +.. ..+..+++|++|+++.+.. ....+..+. .+++|+.|+++..........+.
T Consensus 125 L~~L~L~~n~~~~~-~~~----~~~~~l~~L~~L~L~~n~l-~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~~~~~- 192 (549)
T 2z81_A 125 LQTLRIGNVETFSE-IRR----IDFAGLTSLNELEIKALSL-RNYQSQSLK-----SIRDIHHLTLHLSESAFLLEIFA- 192 (549)
T ss_dssp CCEEEEEESSSCCE-ECT----TTTTTCCEEEEEEEEETTC-CEECTTTTT-----TCSEEEEEEEECSBSTTHHHHHH-
T ss_pred ccEEECCCCccccc-cCH----hhhhcccccCeeeccCCcc-cccChhhhh-----ccccCceEecccCcccccchhhH-
Confidence 99999976642111 110 2345789999999997531 111222232 34899999998876655544421
Q ss_pred hhcccccccCcccccccccCCCCccEEecccCCCCHHHH--HHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhh---
Q 007372 198 IGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELL--ITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQS--- 272 (606)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l--~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--- 272 (606)
..+++|++|+++++.+....+ ..+...+++|+.|++.++ .+++.....
T Consensus 193 ------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n---------~l~~~~~~~l~~ 245 (549)
T 2z81_A 193 ------------------DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS---------VLTDESFNELLK 245 (549)
T ss_dssp ------------------HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC---------EEEHHHHHHHHG
T ss_pred ------------------hhcccccEEEccCCccccccccccchhhhhhcccceecccc---------ccchhHHHHHHH
Confidence 237899999998876654210 112234688999999885 233333322
Q ss_pred -ccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHH----HHHHHHHcCCCCcEEEEcCC
Q 007372 273 -LGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDA----GFAAILLSCHSLKKFEVRSA 347 (606)
Q Consensus 273 -l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~ 347 (606)
+..+++|+.+++.+|.......+...... ....+++|+.|.+.++ .++.. .+..+....++|+.|+++++
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~----~~~~l~~L~~L~l~~~-~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESD----VVSELGKVETVTIRRL-HIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTT----CCCCCTTCCEEEEESC-BCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred Hhhhhccccccccccccccccccccccchh----hhhhhccccccccccc-ccchhhhcccchhhhhhcccceEEEeccC
Confidence 34678999999988764332222111111 1125678888888776 33221 11223345689999999987
Q ss_pred CCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHH---hcCCCCCcEEEccCCCCCChHHH--HcccCCCCCCEEEccC
Q 007372 348 SFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKK---LASSRNLEVLDLGGCKSIADTCL--RSISCLRKLTALNLTG 422 (606)
Q Consensus 348 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~l~~ 422 (606)
.. ... ...+...+++|+.|++++|. +.+..... +..+++|+.|++++| .++.... ..+..+++|+.|++++
T Consensus 321 ~l-~~i-p~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 321 KV-FLV-PCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp CC-CCC-CHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred cc-ccC-CHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCC
Confidence 52 211 11233457999999999988 67655433 567899999999998 6765432 4577899999999999
Q ss_pred CCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEec
Q 007372 423 ADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVR 502 (606)
Q Consensus 423 ~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 502 (606)
|.++. +......+++|++|++++|. ++.. . ....++|+.|++++| .++.. ...+++|++|+++
T Consensus 397 N~l~~--lp~~~~~~~~L~~L~Ls~N~-l~~l-----~---~~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls 459 (549)
T 2z81_A 397 NTFHP--MPDSCQWPEKMRFLNLSSTG-IRVV-----K---TCIPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYIS 459 (549)
T ss_dssp CCCCC--CCSCCCCCTTCCEEECTTSC-CSCC-----C---TTSCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECC
T ss_pred CCCcc--CChhhcccccccEEECCCCC-cccc-----c---chhcCCceEEECCCC-Chhhh-----cccCChhcEEECC
Confidence 98773 22223357899999999997 4421 1 012469999999999 66642 1468999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 503 SCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 503 ~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
+|. ++. +.... .+++|++|++++| .++......+. .+++|+.|++++|++..+
T Consensus 460 ~N~-l~~--ip~~~-------~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 460 RNK-LKT--LPDAS-------LFPVLLVMKISRN-QLKSVPDGIFD--RLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp SSC-CSS--CCCGG-------GCTTCCEEECCSS-CCCCCCTTGGG--GCTTCCEEECCSSCBCCC
T ss_pred CCc-cCc--CCCcc-------cCccCCEEecCCC-ccCCcCHHHHh--cCcccCEEEecCCCccCC
Confidence 997 662 22222 5889999999999 57764444443 589999999999998766
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=7.1e-26 Score=237.06 Aligned_cols=451 Identities=13% Similarity=0.050 Sum_probs=280.1
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCCC
Q 007372 39 QALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCPN 117 (606)
Q Consensus 39 ~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 117 (606)
..+++++.|+++++.+...... .+..+++|++|+++++.++......+. .++|++|+++++. ++ .++.. .+++
T Consensus 18 ~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~--~lp~~--~l~~ 91 (520)
T 2z7x_B 18 DLSQKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LV--KISCH--PTVN 91 (520)
T ss_dssp SCCTTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CC--EEECC--CCCC
T ss_pred cccccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-ee--ecCcc--ccCC
Confidence 4458899999999887653333 344589999999999999887666665 4899999999874 33 12211 6889
Q ss_pred cceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccce--eEEeecCCcccchHHHH
Q 007372 118 LRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTI--KSLKLQPVLERDAFFLI 195 (606)
Q Consensus 118 L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L--~~L~l~~~~~~~~~~~~ 195 (606)
|++|+++.+......+. ..+..+++|++|+++.+. +....+..+ ++| +.|+++++.....
T Consensus 92 L~~L~L~~N~l~~~~~p-----~~~~~l~~L~~L~L~~n~----l~~~~~~~l-----~~L~L~~L~l~~n~l~~~---- 153 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPIC-----KEFGNMSQLKFLGLSTTH----LEKSSVLPI-----AHLNISKVLLVLGETYGE---- 153 (520)
T ss_dssp CSEEECCSSCCSSCCCC-----GGGGGCTTCCEEEEEESS----CCGGGGGGG-----TTSCEEEEEEEECTTTTS----
T ss_pred ccEEeccCCccccccch-----hhhccCCcceEEEecCcc----cchhhcccc-----ccceeeEEEeeccccccc----
Confidence 99999977754332222 345678999999999753 333344333 556 9999887643000
Q ss_pred HHhhcccccccCcccccccccCCC-CccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhcc
Q 007372 196 RRIGRNLMETVQPPILTSSYYSSF-NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG 274 (606)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 274 (606)
+..+..+..+. +...++++.+.+...........+++|+.+++++|...... ..+. ..+..+.
T Consensus 154 -------------~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~-~~~~~l~ 217 (520)
T 2z7x_B 154 -------------KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC--SYFL-SILAKLQ 217 (520)
T ss_dssp -------------SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT--HHHH-HHHHGGG
T ss_pred -------------ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc--ceee-cchhhhc
Confidence 00001111111 11233444443332111122234667777777765311000 0111 2234566
Q ss_pred CCCCccEEEeccccccCCCCccccChHHHHHHHh--cCCCccEEEcCCCCCCCHHHHHHHH-----HcCCCCcEEEEcCC
Q 007372 275 SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSE--GCKGLESVRLGGFSKVSDAGFAAIL-----LSCHSLKKFEVRSA 347 (606)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~ 347 (606)
.+++|+.|++.++. +++..+..+.. ..++|++|+++++ .+++. +.... ..+++|+.++++++
T Consensus 218 ~l~~L~~L~l~~~~---------l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~p~~~~~~~~~~l~~L~~l~l~~n 286 (520)
T 2z7x_B 218 TNPKLSNLTLNNIE---------TTWNSFIRILQLVWHTTVWYFSISNV-KLQGQ-LDFRDFDYSGTSLKALSIHQVVSD 286 (520)
T ss_dssp GCTTCCEEEEEEEE---------EEHHHHHHHHHHHHTSSCSEEEEEEE-EEESC-CCCCCCCCCSCCCCEEEEEEEEEC
T ss_pred cccchhhccccccc---------cCHHHHHHHHHHhhhCcccEEEeecc-cccCc-cccchhhcccccCceeEecccccc
Confidence 77888888887654 55554444332 2467888888776 22210 00001 35677778887776
Q ss_pred CC-CCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCC
Q 007372 348 SF-LSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 426 (606)
Q Consensus 348 ~~-~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 426 (606)
.. ++...+..... ..+|+.|+++++. +.... ....+++|++|++++| .+++.....+..+++|+.|++++|.++
T Consensus 287 ~~~~p~~~~~~~~~-~~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 361 (520)
T 2z7x_B 287 VFGFPQSYIYEIFS-NMNIKNFTVSGTR-MVHML--CPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLK 361 (520)
T ss_dssp CCCSCTHHHHHHHH-TCCCSEEEEESSC-CCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred ceecchhhhhcccc-cCceeEEEcCCCc-ccccc--chhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccC
Confidence 53 22223333222 2578899998876 33211 1246899999999998 777766677788999999999999998
Q ss_pred hHH-HHHHHhcCCCccEEEccCCCCCCH-HHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcC-CCCcEEEecC
Q 007372 427 DSG-LSILAQGNLPIMNLCLRGCKRVTD-KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG-IGIIDLCVRS 503 (606)
Q Consensus 427 ~~~-~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~ 503 (606)
+.. +......+++|++|++++|. ++. .....+ ..+++|++|++++| .++..... .+ ++|+.|++++
T Consensus 362 ~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~----~l~~~L~~L~Ls~ 430 (520)
T 2z7x_B 362 ELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDC-----SWTKSLLSLNMSSN-ILTDTIFR----CLPPRIKVLDLHS 430 (520)
T ss_dssp BHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSC-----CCCTTCCEEECCSS-CCCGGGGG----SCCTTCCEEECCS
T ss_pred ccccchHHHhhCCCCCEEECCCCc-CCcccccchh-----ccCccCCEEECcCC-CCCcchhh----hhcccCCEEECCC
Confidence 742 33344568999999999987 443 221112 36789999999998 66643322 33 6999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 504 CFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 504 ~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
|. ++.. ...+. .+++|++|++++| .++..+...+ ..+++|+.|++++|++..+
T Consensus 431 N~-l~~i-p~~~~-------~l~~L~~L~L~~N-~l~~l~~~~~--~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 431 NK-IKSI-PKQVV-------KLEALQELNVASN-QLKSVPDGIF--DRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SC-CCCC-CGGGG-------GCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred Cc-cccc-chhhh-------cCCCCCEEECCCC-cCCccCHHHh--ccCCcccEEECcCCCCccc
Confidence 97 6621 11122 5889999999999 4765333223 3688999999999998866
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=9.6e-27 Score=248.53 Aligned_cols=467 Identities=14% Similarity=0.068 Sum_probs=292.3
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCCC
Q 007372 39 QALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCPN 117 (606)
Q Consensus 39 ~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 117 (606)
..++++++|+++++.+.... +..+..+++|++|+++++.++......+. .++|++|++++|.-... .... ...+++
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~-~~~l~~ 129 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL-ESFP-IGQLIT 129 (606)
T ss_dssp TTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS-SSSC-CTTCTT
T ss_pred cCCccCcEEeCCCCcccccC-HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccc-cccc-cCCCCC
Confidence 35678999999998766421 22334588999999999988877555555 58999999998743221 1011 257889
Q ss_pred cceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhh----------------------hcc
Q 007372 118 LRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIF----------------------FLP 175 (606)
Q Consensus 118 L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~----------------------~~~ 175 (606)
|++|+++.+......+. ..+..+++|++|+++++.. ....+..+..+.. ...
T Consensus 130 L~~L~L~~n~l~~~~lp-----~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~ 203 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLP-----AYFSNLTNLVHVDLSYNYI-QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203 (606)
T ss_dssp CCEEECCSSCCCCCCCC-----GGGGTCTTCCEEECCSSCC-CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred CCEEeCCCCcccceech-----HhHhhcCCCCEEEccCCcc-eecChhhhhhhhccccccceeeccCCCcceeCcccccC
Confidence 99999977644322222 4566788999999886431 1122222322210 012
Q ss_pred cceeEEeecCCccc--chHHHHHH-hhcc----------cccccCcccccccccCCC--CccEEec-ccCCCCHHHHHHH
Q 007372 176 STIKSLKLQPVLER--DAFFLIRR-IGRN----------LMETVQPPILTSSYYSSF--NLRSLSL-VLDVITDELLITI 239 (606)
Q Consensus 176 ~~L~~L~l~~~~~~--~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~--~L~~L~l-~~~~~~~~~l~~l 239 (606)
.+|+.|+++++... .....+.. .... .... ........+..+. .++.+.+ ..+.+..... .
T Consensus 204 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~- 280 (606)
T 3vq2_A 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN-LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-K- 280 (606)
T ss_dssp CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC-CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-S-
T ss_pred ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc-ccccChHHhhhhhhccHhheecccccccccccc-c-
Confidence 36777777776432 12222221 0000 0000 0000000011111 2344444 2344444322 2
Q ss_pred HhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcC
Q 007372 240 TASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLG 319 (606)
Q Consensus 240 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~ 319 (606)
...+++|+.|++.++... .+ ..+..+++|++|++.+|.. ..+. .+ .+++|+.|+++
T Consensus 281 ~~~l~~L~~L~l~~~~~~------~l-----~~l~~~~~L~~L~l~~n~l------~~lp-----~~--~l~~L~~L~l~ 336 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIK------YL-----EDVPKHFKWQSLSIIRCQL------KQFP-----TL--DLPFLKSLTLT 336 (606)
T ss_dssp CGGGTTCSEEEEESCCCC------CC-----CCCCTTCCCSEEEEESCCC------SSCC-----CC--CCSSCCEEEEE
T ss_pred cccCCCCCEEEecCccch------hh-----hhccccccCCEEEcccccC------cccc-----cC--CCCccceeecc
Confidence 456799999999987431 11 1566788999999998853 1121 11 67899999999
Q ss_pred CCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCC
Q 007372 320 GFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCK 399 (606)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 399 (606)
++...... ....+++|+.|+++++..............+++|++|++++|. +.... ..+..+++|+.|++++|
T Consensus 337 ~n~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n- 409 (606)
T 3vq2_A 337 MNKGSISF----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS-ANFMGLEELQHLDFQHS- 409 (606)
T ss_dssp SCSSCEEC----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC-CCCTTCTTCCEEECTTS-
T ss_pred CCcCccch----hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch-hhccCCCCCCeeECCCC-
Confidence 88443322 1236799999999987532111012234567999999999987 44322 44667899999999998
Q ss_pred CCChHHH-HcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCC
Q 007372 400 SIADTCL-RSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 478 (606)
Q Consensus 400 ~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 478 (606)
.+..... ..+..+++|+.|++++|.++...... ...+++|++|++++|. +++..+.... ..+++|+.|++++|
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~----~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNS-FKDNTLSNVF----ANTTNLTFLDLSKC 483 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCE-EGGGEECSCC----TTCTTCCEEECTTS
T ss_pred ccCCccChhhhhccccCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCc-CCCcchHHhh----ccCCCCCEEECCCC
Confidence 5554333 56778999999999999876533222 3358999999999997 4432111112 36899999999999
Q ss_pred CCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCC-CceE
Q 007372 479 PGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFR-GLHW 557 (606)
Q Consensus 479 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~-~L~~ 557 (606)
.++......+ ..+++|++|++++|. +++.....+. .+++|++|++++|. ++..+.. + ..+| +|+.
T Consensus 484 -~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~l~~N~-l~~~p~~-~--~~l~~~L~~ 549 (606)
T 3vq2_A 484 -QLEQISWGVF-DTLHRLQLLNMSHNN-LLFLDSSHYN-------QLYSLSTLDCSFNR-IETSKGI-L--QHFPKSLAF 549 (606)
T ss_dssp -CCCEECTTTT-TTCTTCCEEECCSSC-CSCEEGGGTT-------TCTTCCEEECTTSC-CCCEESC-G--GGSCTTCCE
T ss_pred -cCCccChhhh-cccccCCEEECCCCc-CCCcCHHHcc-------CCCcCCEEECCCCc-CcccCHh-H--hhhcccCcE
Confidence 6765433333 467999999999997 6654333444 58999999999994 7753332 2 2466 6999
Q ss_pred EEeeceeccCC
Q 007372 558 LGIGQTRLASK 568 (606)
Q Consensus 558 L~l~~~~~~~~ 568 (606)
|++++|++..+
T Consensus 550 l~l~~N~~~c~ 560 (606)
T 3vq2_A 550 FNLTNNSVACI 560 (606)
T ss_dssp EECCSCCCCCS
T ss_pred EEccCCCcccC
Confidence 99999998754
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2e-27 Score=252.17 Aligned_cols=478 Identities=14% Similarity=0.045 Sum_probs=242.9
Q ss_pred HHhhhccccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHH
Q 007372 32 LRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILAS 110 (606)
Q Consensus 32 w~~~~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~ 110 (606)
+..++ ....+.++.|+++++.+...... .+..+++|++|+++++.++......+. .++|++|+++++. ++......
T Consensus 19 l~~ip-~~l~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 95 (570)
T 2z63_A 19 FYKIP-DNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA 95 (570)
T ss_dssp CSSCC-SSSCSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTT
T ss_pred ccccC-CCccccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhh
Confidence 33444 34567899999999887652222 234589999999999988877666565 5999999999874 32111112
Q ss_pred HhhcCCCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccc-cccchhhhhhhcccceeEEeecCCccc
Q 007372 111 IGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEV-DACAFQSIIFFLPSTIKSLKLQPVLER 189 (606)
Q Consensus 111 l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~~~~~~L~~L~l~~~~~~ 189 (606)
...+++|++|++..+....... ..+..+++|++|+++.+.. ..+ .+..+.. +++|+.|+++++...
T Consensus 96 -~~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l-~~~~lp~~~~~-----l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 96 -FSGLSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLI-QSFKLPEYFSN-----LTNLEHLDLSSNKIQ 162 (570)
T ss_dssp -TTTCTTCCEEECTTSCCCCSTT------CSCTTCTTCCEEECCSSCC-CCCCCCGGGGG-----CTTCCEEECTTSCCC
T ss_pred -hcCccccccccccccccccCCC------ccccccccccEEecCCCcc-ceecChhhhcc-----cCCCCEEeCcCCccc
Confidence 2578999999997663322110 0145788999999996431 111 1233333 489999999887543
Q ss_pred chH-HHHHH-hh-------cccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcc
Q 007372 190 DAF-FLIRR-IG-------RNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPL 260 (606)
Q Consensus 190 ~~~-~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 260 (606)
... ..+.. .. ..........+.+..+.. .+|++|+++.+......++.....++.++.+.+.........
T Consensus 163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred eecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 321 11111 00 111111111112222222 267777777655444455555556666665544321110000
Q ss_pred cccccChh------------------------HHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEE
Q 007372 261 ARLDLTSS------------------------GLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESV 316 (606)
Q Consensus 261 ~~~~~~~~------------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L 316 (606)
.+..+... ....+..+++|++|++.++.... +.+ ....+ +|++|
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------l~~-----~~~~~-~L~~L 309 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER------VKD-----FSYNF-GWQHL 309 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS------CCB-----CCSCC-CCSEE
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh------hhh-----hhccC-CccEE
Confidence 00111111 11223345666666666553211 100 01123 66666
Q ss_pred EcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH--HHHhcCCCCCcEEE
Q 007372 317 RLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET--VKKLASSRNLEVLD 394 (606)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~L~~L~ 394 (606)
+++++ .+.. +.. ..+++|+.|++.++........ ..+++|++|++++|. ++... ...+..+++|+.|+
T Consensus 310 ~l~~n-~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 310 ELVNC-KFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp EEESC-BCSS--CCB--CBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEE
T ss_pred eeccC-cccc--cCc--ccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCc-cCccccccccccccCccCEEE
Confidence 66665 2321 110 2456666666666532111100 345666666666665 33221 22344566666666
Q ss_pred ccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEe
Q 007372 395 LGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLD 474 (606)
Q Consensus 395 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~ 474 (606)
+++| .+...... +..+++|+.|++++|.++..........+++|++|++++|. ++......+ ..+++|+.|+
T Consensus 380 l~~n-~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~ 451 (570)
T 2z63_A 380 LSFN-GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIF-----NGLSSLEVLK 451 (570)
T ss_dssp CCSC-SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTT-----TTCTTCCEEE
T ss_pred CCCC-cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchhhh-----hcCCcCcEEE
Confidence 6665 33332212 55666666666666644332211122345666666666665 322111111 2456666666
Q ss_pred cCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCC
Q 007372 475 LGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRG 554 (606)
Q Consensus 475 l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~ 554 (606)
+++| .+++..+......+++|++|++++|. +++.....+. .+++|++|++++| .++......+ ..+++
T Consensus 452 l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~ 519 (570)
T 2z63_A 452 MAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-------SLSSLQVLNMASN-QLKSVPDGIF--DRLTS 519 (570)
T ss_dssp CTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCSCCCTTTT--TTCTT
T ss_pred CcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhhh-------cccCCCEEeCCCC-cCCCCCHHHh--hcccC
Confidence 6666 33321111111345666666666665 4432222222 3666666666666 3444332222 24566
Q ss_pred ceEEEeeceeccCC
Q 007372 555 LHWLGIGQTRLASK 568 (606)
Q Consensus 555 L~~L~l~~~~~~~~ 568 (606)
|+.|++++|++...
T Consensus 520 L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 520 LQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECCSSCBCCC
T ss_pred CcEEEecCCcccCC
Confidence 66666666666544
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=5.7e-28 Score=266.49 Aligned_cols=511 Identities=14% Similarity=0.028 Sum_probs=248.4
Q ss_pred hHHHHhhhccccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCC-CChhhhhhhh-cCCcceEeccCCCCCcHH
Q 007372 29 NRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLR-LQDHSLCAFL-TPRIRELNLWCCSSLSYQ 106 (606)
Q Consensus 29 ck~w~~~~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-l~~~~l~~~~-~~~L~~L~l~~~~~~~~~ 106 (606)
.+.|..++ . ..++++.|+|+++.+...... .+..+++|++|+++++. +.......+. .++|++|++++|.-.. .
T Consensus 13 ~~~L~~vP-~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~ 88 (844)
T 3j0a_A 13 FCNLTQVP-Q-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-L 88 (844)
T ss_dssp CCCSSCCC-S-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-E
T ss_pred CCCCCCCC-C-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-c
Confidence 34556666 3 778899999998876642222 23457888888887663 3333334444 4888888888774322 1
Q ss_pred HHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCC
Q 007372 107 ILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPV 186 (606)
Q Consensus 107 ~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 186 (606)
. +.....+++|++|+++.+........ ...+..+++|++|+++.+..........+. .+++|+.|+++++
T Consensus 89 ~-p~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-----~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 89 H-PDAFQGLFHLFELRLYFCGLSDAVLK----DGYFRNLKALTRLDLSKNQIRSLYLHPSFG-----KLNSLKSIDFSSN 158 (844)
T ss_dssp C-TTSSCSCSSCCCEECTTCCCSSCCST----TCCCSSCSSCCEEEEESCCCCCCCCCGGGG-----TCSSCCEEEEESS
T ss_pred C-HhHccCCcccCEeeCcCCCCCccccc----CccccccCCCCEEECCCCcccccccchhHh-----hCCCCCEEECCCC
Confidence 1 11125788888888876643321111 012446788888888864311111111233 3478888888776
Q ss_pred cccc-----hHHHHHH--hhcccccccCcccccccccCCC------CccEEecccCCCCHHHHHHHHhhC--CCCCEEEc
Q 007372 187 LERD-----AFFLIRR--IGRNLMETVQPPILTSSYYSSF------NLRSLSLVLDVITDELLITITASL--PFLVELDL 251 (606)
Q Consensus 187 ~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~l~~l~~~~--~~L~~L~l 251 (606)
.... +..+... ...........+..+..+..++ +|++|+++.+.+.......+.... ..++.+.+
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 4322 1111000 0000000000001111112222 377777776654432222222211 33444444
Q ss_pred CCCCCCCcccccccChhHHhhccC--CCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHH
Q 007372 252 EDRPNTEPLARLDLTSSGLQSLGS--CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGF 329 (606)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 329 (606)
..+..........+.+.....+.. .++|+.|+++++... .+.. .....+++|+.|+++++ .++....
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~------~~~~----~~~~~l~~L~~L~L~~n-~i~~~~~ 307 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF------SLNS----RVFETLKDLKVLNLAYN-KINKIAD 307 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC------EECS----CCSSSCCCCCEEEEESC-CCCEECT
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCccc------ccCh----hhhhcCCCCCEEECCCC-cCCCCCh
Confidence 321111000001111111122222 246666666654311 0100 00123456666666655 3322110
Q ss_pred HHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHH---
Q 007372 330 AAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCL--- 406 (606)
Q Consensus 330 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--- 406 (606)
..+..+++|+.|+++++... .. .......+++|+.|++++|. +.......+..+++|+.|++++| .++....
T Consensus 308 -~~~~~l~~L~~L~Ls~N~l~-~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~ 382 (844)
T 3j0a_A 308 -EAFYGLDNLQVLNLSYNLLG-EL-YSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN-ALTTIHFIPS 382 (844)
T ss_dssp -TTTTTCSSCCEEEEESCCCS-CC-CSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETC-CSCCCSSCCS
T ss_pred -HHhcCCCCCCEEECCCCCCC-cc-CHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCC-CCCcccCCCC
Confidence 11234566666666655311 00 00112334566666666554 33322223444566666666655 3321100
Q ss_pred -----------Hcc-cCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEe
Q 007372 407 -----------RSI-SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLD 474 (606)
Q Consensus 407 -----------~~l-~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~ 474 (606)
..+ ....+++.|++++|.+++.........+++|+.|++++|. ++........ ..+++|+.|+
T Consensus 383 L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~----~~~~~L~~L~ 457 (844)
T 3j0a_A 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTP----SENPSLEQLF 457 (844)
T ss_dssp CSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSS----CSCTTCCBCE
T ss_pred cchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc-cccccccccc----ccCCcccccc
Confidence 001 1133455566666655543333333457777777777775 3321111111 2457778888
Q ss_pred cCCCCCCCHHH----HHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcC
Q 007372 475 LGYMPGISDDG----ILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRP 550 (606)
Q Consensus 475 l~~~~~l~~~~----~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 550 (606)
+++| .++... ......++++|++|++++|. ++......+ +.+++|+.|++++| .++......+
T Consensus 458 Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-------~~l~~L~~L~Ls~N-~l~~l~~~~~--- 524 (844)
T 3j0a_A 458 LGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVF-------SHLTALRGLSLNSN-RLTVLSHNDL--- 524 (844)
T ss_dssp EESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCTTSS-------SSCCSCSEEEEESC-CCSSCCCCCC---
T ss_pred CCCC-ccccccccccchhhhcCcccccEEECCCCc-ccccChhHc-------cchhhhheeECCCC-CCCccChhhh---
Confidence 8776 443110 00011345778888887775 332111112 26889999999999 4665332222
Q ss_pred CCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 551 SFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 551 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
.++|+.|++++|++....+.. .+.++ +++.||++.|.
T Consensus 525 -~~~L~~L~Ls~N~l~~~~~~~-------~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 525 -PANLEILDISRNQLLAPNPDV-------FVSLSVLDITHNKFICE 562 (844)
T ss_dssp -CSCCCEEEEEEECCCCCCSCC-------CSSCCEEEEEEECCCCS
T ss_pred -hccccEEECCCCcCCCCChhH-------hCCcCEEEecCCCcccc
Confidence 278999999999987663222 12344 99999999987
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=8e-28 Score=255.20 Aligned_cols=450 Identities=16% Similarity=0.125 Sum_probs=273.1
Q ss_pred cccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhC
Q 007372 67 KALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSC 145 (606)
Q Consensus 67 ~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~ 145 (606)
+++++|+++++.++......+. +++|++|++++|. ++.... .....+++|++|+++.+...... . ..+..+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~-~-----~~~~~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNPIQSLA-L-----GAFSGL 99 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCCCCEEC-T-----TTTTTC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCc-ccccCchhCCEEeCcCCcCCccC-H-----hhhcCc
Confidence 5799999999999887665555 5999999999984 332111 12257999999999766332110 0 235578
Q ss_pred CCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEe
Q 007372 146 LQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLS 225 (606)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 225 (606)
++|+.|+++.+.. .......+. .+++|+.|+++++....+. .+..+.++++|++|+
T Consensus 100 ~~L~~L~L~~n~l-~~l~~~~~~-----~l~~L~~L~L~~n~l~~~~------------------lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 100 SSLQKLVAVETNL-ASLENFPIG-----HLKTLKELNVAHNLIQSFK------------------LPEYFSNLTNLEHLD 155 (570)
T ss_dssp TTCCEEECTTSCC-CCSTTCSCT-----TCTTCCEEECCSSCCCCCC------------------CCGGGGGCTTCCEEE
T ss_pred ccccccccccccc-ccCCCcccc-----ccccccEEecCCCccceec------------------ChhhhcccCCCCEEe
Confidence 9999999996431 111111233 3589999999987543210 123345589999999
Q ss_pred cccCCCCHHHHHHHHhhCCCC----CEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccC----------
Q 007372 226 LVLDVITDELLITITASLPFL----VELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH---------- 291 (606)
Q Consensus 226 l~~~~~~~~~l~~l~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---------- 291 (606)
++++.+.......+ ..+++| +.+++++|.... +.. ..+... +|++|++.++....
T Consensus 156 l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l~~n~l~~------~~~---~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l 224 (570)
T 2z63_A 156 LSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNF------IQP---GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL 224 (570)
T ss_dssp CTTSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCE------ECT---TTTTTC-EEEEEEEESCCSCTTHHHHHHHTT
T ss_pred CcCCccceecHHHc-cchhccchhhhhcccCCCCcee------cCH---HHhccC-cceeEecccccccccchhhhhcCc
Confidence 99887765221111 224455 789998875421 111 112222 56666665531100
Q ss_pred ---------------CCCccccChHH-----------------------HHHHHhcCCCccEEEcCCCCCCCHHHHHHHH
Q 007372 292 ---------------QGTFKRVNDMG-----------------------MFLLSEGCKGLESVRLGGFSKVSDAGFAAIL 333 (606)
Q Consensus 292 ---------------~~~~~~~~~~~-----------------------l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 333 (606)
......+.... .......+++|+.|+++++ .++. +....
T Consensus 225 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~--l~~~~ 301 (570)
T 2z63_A 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIER--VKDFS 301 (570)
T ss_dssp TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECS--CCBCC
T ss_pred cccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchh--hhhhh
Confidence 00000000000 0011123566777777665 2221 11112
Q ss_pred HcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHH--HHcccC
Q 007372 334 LSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTC--LRSISC 411 (606)
Q Consensus 334 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~ 411 (606)
..+ +|+.|++.++.... +. ...+++|+.|++.++.. .... ....+++|+.|++++| .++... ...+..
T Consensus 302 ~~~-~L~~L~l~~n~~~~---l~--~~~l~~L~~L~l~~n~~-~~~~--~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~ 371 (570)
T 2z63_A 302 YNF-GWQHLELVNCKFGQ---FP--TLKLKSLKRLTFTSNKG-GNAF--SEVDLPSLEFLDLSRN-GLSFKGCCSQSDFG 371 (570)
T ss_dssp SCC-CCSEEEEESCBCSS---CC--BCBCSSCCEEEEESCBS-CCBC--CCCBCTTCCEEECCSS-CCBEEEEEEHHHHT
T ss_pred ccC-CccEEeeccCcccc---cC--cccccccCEEeCcCCcc-cccc--ccccCCCCCEEeCcCC-ccCccccccccccc
Confidence 234 67777777764210 00 03567888888887652 2110 1146788999999887 555432 244567
Q ss_pred CCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHH
Q 007372 412 LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA 491 (606)
Q Consensus 412 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 491 (606)
+++|++|++++|.++..... ...+++|++|++++|. ++........ ..+++|++|++++| .++......+ .
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~~~~-~ 442 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVF----LSLRNLIYLDISHT-HTRVAFNGIF-N 442 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTT----TTCTTCCEEECTTS-CCEECCTTTT-T
T ss_pred cCccCEEECCCCcccccccc--ccccCCCCEEEccCCc-cccccchhhh----hcCCCCCEEeCcCC-cccccchhhh-h
Confidence 88999999999876543221 3357899999999886 3322111111 36889999999998 5543322222 4
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChh
Q 007372 492 AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNP 571 (606)
Q Consensus 492 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~ 571 (606)
.+++|++|++++|. +++..+ +..+ +.+++|++|++++| .++......+. .+++|+.|++++|++.....
T Consensus 443 ~l~~L~~L~l~~n~-l~~~~~---p~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~- 511 (570)
T 2z63_A 443 GLSSLEVLKMAGNS-FQENFL---PDIF---TELRNLTFLDLSQC-QLEQLSPTAFN--SLSSLQVLNMASNQLKSVPD- 511 (570)
T ss_dssp TCTTCCEEECTTCE-EGGGEE---CSCC---TTCTTCCEEECTTS-CCCEECTTTTT--TCTTCCEEECCSSCCSCCCT-
T ss_pred cCCcCcEEECcCCc-Cccccc---hhhh---hcccCCCEEECCCC-ccccCChhhhh--cccCCCEEeCCCCcCCCCCH-
Confidence 67999999999997 542111 1111 26899999999999 47765444443 68999999999999876522
Q ss_pred HHHHHhhcCCceE-Eeecccccccc
Q 007372 572 VITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 572 ~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
......+.++ +++.||++.|.
T Consensus 512 ---~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 512 ---GIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp ---TTTTTCTTCCEEECCSSCBCCC
T ss_pred ---HHhhcccCCcEEEecCCcccCC
Confidence 2334567777 99999999988
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.7e-24 Score=226.59 Aligned_cols=293 Identities=15% Similarity=0.113 Sum_probs=189.3
Q ss_pred ccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHH--cCCCCcEEEEcCCCC-
Q 007372 273 LGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL--SCHSLKKFEVRSASF- 349 (606)
Q Consensus 273 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~- 349 (606)
+..+++|+.++++++... ..+..+. ..+. -...+++|+.|+++++ .+++..+..+.. .+++|+.|+++++..
T Consensus 186 ~~~l~~L~~L~l~~n~~~--~~~~~~~-~~~~-~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLED--NKCSYFL-SILA-KLQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260 (520)
T ss_dssp CTTCSEEEECCEEECCST--TTTHHHH-HHHH-GGGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEEE
T ss_pred hhcccceeeccccccccc--cccceee-cchh-hhccccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeeccccc
Confidence 346788888888875210 0000011 1122 2346789999999987 666665554433 357999999988641
Q ss_pred --CCHHHHHHHHcCCCCccEEEccCCCC-CCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCC
Q 007372 350 --LSDLAFHDLTGVPCALVEVRLLWCRL-ITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 426 (606)
Q Consensus 350 --~~~~~~~~l~~~~~~L~~L~l~~~~~-l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 426 (606)
+....+......+++|+.++++++.- ++...+..+...++|+.|+++++ .+.... ....+++|++|++++|.++
T Consensus 261 ~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-RMVHML--CPSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp SCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS-CCCCCC--CCSSCCCCCEEECCSSCCC
T ss_pred CccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC-cccccc--chhhCCcccEEEeECCccC
Confidence 11110000014578888888888762 22222333333468999999998 454321 2257899999999999888
Q ss_pred hHHHHHHHhcCCCccEEEccCCCCCCHH-HHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCC
Q 007372 427 DSGLSILAQGNLPIMNLCLRGCKRVTDK-GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 505 (606)
Q Consensus 427 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 505 (606)
+.....+ ..+++|++|++++|. ++.. .+.... ..+++|++|++++| .++..........+++|++|++++|.
T Consensus 338 ~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~----~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 338 DTVFENC-GHLTELETLILQMNQ-LKELSKIAEMT----TQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp TTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHH----TTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred hhhhhhh-ccCCCCCEEEccCCc-cCccccchHHH----hhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCC
Confidence 7433333 458999999999997 5542 222223 37899999999998 56541111122456899999999997
Q ss_pred CCCHHHHHHHHhhCCCcccC-CCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE
Q 007372 506 YVTDASVEALARKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT 584 (606)
Q Consensus 506 ~l~~~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 584 (606)
++... .. .+ ++|+.|++++| .++..+.. + ..+++|+.|++++|++...... .....+.++
T Consensus 411 -l~~~~----~~------~l~~~L~~L~Ls~N-~l~~ip~~-~--~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~ 471 (520)
T 2z7x_B 411 -LTDTI----FR------CLPPRIKVLDLHSN-KIKSIPKQ-V--VKLEALQELNVASNQLKSVPDG----IFDRLTSLQ 471 (520)
T ss_dssp -CCGGG----GG------SCCTTCCEEECCSS-CCCCCCGG-G--GGCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred -CCcch----hh------hhcccCCEEECCCC-cccccchh-h--hcCCCCCEEECCCCcCCccCHH----HhccCCccc
Confidence 76422 22 23 69999999999 57743222 2 2589999999999998855222 234456676
Q ss_pred -Eeeccccccccc--cee
Q 007372 585 -FCLDGCEIGCHD--GWQ 599 (606)
Q Consensus 585 -~~~~g~~~~~~~--~~~ 599 (606)
+++.||++.|.. .|+
T Consensus 472 ~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 472 KIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp EEECCSSCBCCCHHHHHH
T ss_pred EEECcCCCCcccCCchHH
Confidence 999999999983 454
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.9e-23 Score=205.26 Aligned_cols=303 Identities=18% Similarity=0.131 Sum_probs=191.8
Q ss_pred cceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCC
Q 007372 176 STIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRP 255 (606)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 255 (606)
++|+.|+++++....+.. +..+++|++|+++++.+.+.. . ...+++|++|++++|.
T Consensus 44 ~~L~~L~l~~~~i~~~~~---------------------~~~~~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~L~~n~ 99 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG---------------------IEYLTNLEYLNLNGNQITDIS--P-LSNLVKLTNLYIGTNK 99 (347)
T ss_dssp TTCSEEECCSSCCCCCTT---------------------GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred ccccEEEEeCCccccchh---------------------hhhcCCccEEEccCCccccch--h-hhcCCcCCEEEccCCc
Confidence 677888887765443332 234788999998887776522 2 4568889999998874
Q ss_pred CCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHc
Q 007372 256 NTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLS 335 (606)
Q Consensus 256 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 335 (606)
.. . +..+..+++|++|+++++.. .+... ...+++|+.|++++|........ +..
T Consensus 100 i~---------~--~~~~~~l~~L~~L~l~~n~i---------~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~ 153 (347)
T 4fmz_A 100 IT---------D--ISALQNLTNLRELYLNEDNI---------SDISP---LANLTKMYSLNLGANHNLSDLSP---LSN 153 (347)
T ss_dssp CC---------C--CGGGTTCTTCSEEECTTSCC---------CCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTT
T ss_pred cc---------C--chHHcCCCcCCEEECcCCcc---------cCchh---hccCCceeEEECCCCCCcccccc---hhh
Confidence 32 1 23467788888998887652 21111 33678888888888744332111 346
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCC
Q 007372 336 CHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL 415 (606)
Q Consensus 336 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 415 (606)
+++|++|+++++....... ...+++|++|++++|. +.... .+..+++|+.|+++++ .+.+.. .+..+++|
T Consensus 154 l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~~--~~~~~~~L 223 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQ-IEDIS--PLASLTSLHYFTAYVN-QITDIT--PVANMTRL 223 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSC-CCCCG--GGGGCTTCCEEECCSS-CCCCCG--GGGGCTTC
T ss_pred CCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCc-ccccc--cccCCCccceeecccC-CCCCCc--hhhcCCcC
Confidence 7788888888765322221 3456788888887776 33322 2566778888888776 454432 25677778
Q ss_pred CEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCC
Q 007372 416 TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG 495 (606)
Q Consensus 416 ~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 495 (606)
++|++++|.+++... ...+++|++|++++|. ++.. ..+ ..+++|++|++++| .+++. ..+ ..+++
T Consensus 224 ~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~~-----~~l~~L~~L~l~~n-~l~~~--~~~-~~l~~ 288 (347)
T 4fmz_A 224 NSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ-ISDI--NAV-----KDLTKLKMLNVGSN-QISDI--SVL-NNLSQ 288 (347)
T ss_dssp CEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCC--GGG-----TTCTTCCEEECCSS-CCCCC--GGG-GGCTT
T ss_pred CEEEccCCccCCCcc---hhcCCCCCEEECCCCc-cCCC--hhH-----hcCCCcCEEEccCC-ccCCC--hhh-cCCCC
Confidence 888888876665432 3457788888887775 4432 222 25678888888777 55543 222 46677
Q ss_pred CcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceecc
Q 007372 496 IIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 496 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 566 (606)
|++|++++|. +++.....+. .+++|++|++++|+ ++.... + ..+++|+.|++++|+++
T Consensus 289 L~~L~L~~n~-l~~~~~~~l~-------~l~~L~~L~L~~n~-l~~~~~--~--~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQ-LGNEDMEVIG-------GLTNLTTLFLSQNH-ITDIRP--L--ASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSC-CCGGGHHHHH-------TCTTCSEEECCSSS-CCCCGG--G--GGCTTCSEESSSCC---
T ss_pred CCEEECcCCc-CCCcChhHhh-------ccccCCEEEccCCc-cccccC--h--hhhhccceeehhhhccc
Confidence 8888887776 6666666666 37778888888774 554322 2 35777888888877754
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3.5e-26 Score=252.23 Aligned_cols=377 Identities=16% Similarity=0.098 Sum_probs=224.1
Q ss_pred CcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHh
Q 007372 66 CKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTS 144 (606)
Q Consensus 66 ~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~ 144 (606)
.+++++|++++|.++......+. .++|++|++++|..........+ ..+++|++|+++.+..... .. ..+..
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~l~~~-~p-----~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSKIYFL-HP-----DAFQG 95 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCCCCEE-CT-----TSSCS
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCcCccc-CH-----hHccC
Confidence 57899999999999877665555 49999999999844321111122 6899999999976643211 01 33557
Q ss_pred CCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEE
Q 007372 145 CLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSL 224 (606)
Q Consensus 145 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 224 (606)
+++|++|+++.+. +............+++|+.|+++++...... ....+.++++|++|
T Consensus 96 l~~L~~L~Ls~n~----l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~------------------~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 96 LFHLFELRLYFCG----LSDAVLKDGYFRNLKALTRLDLSKNQIRSLY------------------LHPSFGKLNSLKSI 153 (844)
T ss_dssp CSSCCCEECTTCC----CSSCCSTTCCCSSCSSCCEEEEESCCCCCCC------------------CCGGGGTCSSCCEE
T ss_pred CcccCEeeCcCCC----CCcccccCccccccCCCCEEECCCCcccccc------------------cchhHhhCCCCCEE
Confidence 8999999999754 2221111111123589999999987543221 11234669999999
Q ss_pred ecccCCCCH---HHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCC------CccEEEeccccccCC---
Q 007372 225 SLVLDVITD---ELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCH------HLTGLSLTRCRHNHQ--- 292 (606)
Q Consensus 225 ~l~~~~~~~---~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~--- 292 (606)
+++++.+.. ..+..+.. ++|+.|++++|...... ...+..++ .|+.|+++++.....
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~---------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRV---------SVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBSCCCC---------CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred ECCCCcCCeeCHHHcccccC--CccceEECCCCcccccc---------ccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence 999877654 23333321 78888998887543211 11122222 377777776531100
Q ss_pred ------------------------CCccccChHHHHHHHh-cCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCC
Q 007372 293 ------------------------GTFKRVNDMGMFLLSE-GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSA 347 (606)
Q Consensus 293 ------------------------~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 347 (606)
..+..+.+.....+.. ..++|+.|+++++ .+.... ...+..+++|+.|+++++
T Consensus 223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLN-SRVFETLKDLKVLNLAYN 300 (844)
T ss_dssp GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEEC-SCCSSSCCCCCEEEEESC
T ss_pred HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccC-hhhhhcCCCCCEEECCCC
Confidence 0001111111111111 1368999999887 443211 112346789999999887
Q ss_pred CCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCCh
Q 007372 348 SFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITD 427 (606)
Q Consensus 348 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 427 (606)
.. ... .......+++|++|++++|. ++......+..+++|+.|++++| .++......+..+++|+.|++++|.++.
T Consensus 301 ~i-~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 301 KI-NKI-ADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CC-CEE-CTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred cC-CCC-ChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 52 111 11223457899999999886 55443445667899999999988 6665555567788999999999987764
Q ss_pred HHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCC
Q 007372 428 SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 505 (606)
Q Consensus 428 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 505 (606)
.. .+++|+.|++++|. ++. +. ....+++.|++++| .+++.........+++|+.|++++|.
T Consensus 377 i~------~~~~L~~L~l~~N~-l~~-----l~----~~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 377 IH------FIPSIPDIFLSGNK-LVT-----LP----KINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CS------SCCSCSEEEEESCC-CCC-----CC----CCCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred cc------CCCCcchhccCCCC-ccc-----cc----ccccccceeecccC-ccccCchhhhhhcCCccceeeCCCCc
Confidence 21 26778888887775 321 11 12345555555555 33332222222345555555555554
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.2e-22 Score=208.90 Aligned_cols=216 Identities=23% Similarity=0.237 Sum_probs=141.3
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCC
Q 007372 309 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR 388 (606)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 388 (606)
.+++|+.|+++++ .+++.. .+..+++|+.|+++++....... ...+++|++|++++|. +.+. ..+..++
T Consensus 175 ~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~--~~l~~l~ 243 (466)
T 1o6v_A 175 NLTTLERLDISSN-KVSDIS---VLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LKDI--GTLASLT 243 (466)
T ss_dssp TCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCC--GGGGGCT
T ss_pred cCCCCCEEECcCC-cCCCCh---hhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cccc--hhhhcCC
Confidence 4455555555555 222211 12355666666666654221111 2346777777777765 4432 3456788
Q ss_pred CCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCC
Q 007372 389 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ 468 (606)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 468 (606)
+|+.|++++| .+.+.. .+..+++|+.|++++|.+++... ...+++|+.|++++|. +++.. .+. .++
T Consensus 244 ~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~--~~~-----~l~ 309 (466)
T 1o6v_A 244 NLTDLDLANN-QISNLA--PLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQ-LEDIS--PIS-----NLK 309 (466)
T ss_dssp TCSEEECCSS-CCCCCG--GGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CSCCG--GGG-----GCT
T ss_pred CCCEEECCCC-ccccch--hhhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCc-ccCch--hhc-----CCC
Confidence 8888888887 555432 26778889999998887765432 3457889999998886 44322 133 678
Q ss_pred CCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhh
Q 007372 469 SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK 548 (606)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 548 (606)
+|+.|++++| .+++... + ..+++|++|++++|. +++. ..+. .+++|+.|++++|. +++... +
T Consensus 310 ~L~~L~L~~n-~l~~~~~--~-~~l~~L~~L~l~~n~-l~~~--~~l~-------~l~~L~~L~l~~n~-l~~~~~--~- 371 (466)
T 1o6v_A 310 NLTYLTLYFN-NISDISP--V-SSLTKLQRLFFYNNK-VSDV--SSLA-------NLTNINWLSAGHNQ-ISDLTP--L- 371 (466)
T ss_dssp TCSEEECCSS-CCSCCGG--G-GGCTTCCEEECCSSC-CCCC--GGGT-------TCTTCCEEECCSSC-CCBCGG--G-
T ss_pred CCCEEECcCC-cCCCchh--h-ccCccCCEeECCCCc-cCCc--hhhc-------cCCCCCEEeCCCCc-cCccch--h-
Confidence 9999999998 5654332 2 578999999999997 6653 2333 58899999999994 655332 2
Q ss_pred cCCCCCceEEEeeceeccCC
Q 007372 549 RPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 549 ~~~~~~L~~L~l~~~~~~~~ 568 (606)
..+++|+.|++++|+++..
T Consensus 372 -~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 372 -ANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp -TTCTTCCEEECCCEEEECC
T ss_pred -hcCCCCCEEeccCCcccCC
Confidence 4689999999999988763
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=3.7e-24 Score=225.81 Aligned_cols=180 Identities=9% Similarity=0.108 Sum_probs=114.6
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChH-HHHHHHhcCCCcc
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS-GLSILAQGNLPIM 441 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~ 441 (606)
.+|++|+++++. +.... ....+++|++|++++| .+++.....+..+++|+.|++++|.++.. ........+++|+
T Consensus 331 ~~L~~L~l~~n~-~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 331 MNIKMLSISDTP-FIHMV--CPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp CCCSEEEEESSC-CCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred CcceEEEccCCC-ccccc--CccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 567777777765 22211 1145788888888887 66665556667788888888888877753 2223334578888
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcC-CCCcEEEecCCCCCCHHHHHHHHhhCC
Q 007372 442 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG-IGIIDLCVRSCFYVTDASVEALARKQP 520 (606)
Q Consensus 442 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~ 520 (606)
.|++++|. ++........ ..+++|++|++++| .++...+ ..+ ++|++|++++|. ++. ++....
T Consensus 407 ~L~l~~N~-l~~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N~-l~~-----ip~~~~ 470 (562)
T 3a79_B 407 TLDVSLNS-LNSHAYDRTC----AWAESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNNR-IMS-----IPKDVT 470 (562)
T ss_dssp EEECTTSC-CBSCCSSCCC----CCCTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSSC-CCC-----CCTTTT
T ss_pred EEECCCCc-CCCccChhhh----cCcccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCCc-Ccc-----cChhhc
Confidence 88888886 3321111111 35678888888888 5654322 233 588888888886 552 222111
Q ss_pred CcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 521 DQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 521 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.+++|++|++++| .++..+...+ ..+++|+.|++++|++..+
T Consensus 471 ---~l~~L~~L~L~~N-~l~~l~~~~~--~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 471 ---HLQALQELNVASN-QLKSVPDGVF--DRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ---SSCCCSEEECCSS-CCCCCCTTST--TTCTTCCCEECCSCCBCCC
T ss_pred ---CCCCCCEEECCCC-CCCCCCHHHH--hcCCCCCEEEecCCCcCCC
Confidence 5788888888888 4664332222 3578888888888887755
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=4e-21 Score=189.91 Aligned_cols=148 Identities=21% Similarity=0.218 Sum_probs=89.5
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 361 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 361 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
.+++|+.|+++++. +.+... +..+++|++|++++| .+++... +..+++|+.|++++|.+++. . ....+++|
T Consensus 197 ~l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L 267 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQ-ITDITP--VANMTRLNSLKIGNN-KITDLSP--LANLSQLTWLEIGTNQISDI--N-AVKDLTKL 267 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCC--G-GGTTCTTC
T ss_pred CCCccceeecccCC-CCCCch--hhcCCcCCEEEccCC-ccCCCcc--hhcCCCCCEEECCCCccCCC--h-hHhcCCCc
Confidence 34555555555544 222211 455677777777766 4443222 56677777777777766553 1 13346777
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCC
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 520 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 520 (606)
++|++++|. +++. ..+. .+++|+.|++++| .+++.....+ ..+++|++|++++|. +++... +.
T Consensus 268 ~~L~l~~n~-l~~~--~~~~-----~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~--~~---- 330 (347)
T 4fmz_A 268 KMLNVGSNQ-ISDI--SVLN-----NLSQLNSLFLNNN-QLGNEDMEVI-GGLTNLTTLFLSQNH-ITDIRP--LA---- 330 (347)
T ss_dssp CEEECCSSC-CCCC--GGGG-----GCTTCSEEECCSS-CCCGGGHHHH-HTCTTCSEEECCSSS-CCCCGG--GG----
T ss_pred CEEEccCCc-cCCC--hhhc-----CCCCCCEEECcCC-cCCCcChhHh-hccccCCEEEccCCc-cccccC--hh----
Confidence 777777775 4432 2222 5678888888887 6666555555 367888888888887 554222 33
Q ss_pred CcccCCCCCEEeccCCC
Q 007372 521 DQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 521 ~~~~~~~L~~L~l~~c~ 537 (606)
.+++|++|++++|+
T Consensus 331 ---~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 331 ---SLSKMDSADFANQV 344 (347)
T ss_dssp ---GCTTCSEESSSCC-
T ss_pred ---hhhccceeehhhhc
Confidence 47788888888874
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=2e-21 Score=199.78 Aligned_cols=145 Identities=21% Similarity=0.177 Sum_probs=78.3
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+++|+.|++++|. +.... .+..+++|+.|++++| .+++.. .+..+++|+.|++++|.+++... ...+++|+
T Consensus 242 l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~ 312 (466)
T 1o6v_A 242 LTNLTDLDLANNQ-ISNLA--PLSGLTKLTELKLGAN-QISNIS--PLAGLTALTNLELNENQLEDISP---ISNLKNLT 312 (466)
T ss_dssp CTTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSS-CCCCCG--GGTTCTTCSEEECCSSCCSCCGG---GGGCTTCS
T ss_pred CCCCCEEECCCCc-cccch--hhhcCCCCCEEECCCC-ccCccc--cccCCCccCeEEcCCCcccCchh---hcCCCCCC
Confidence 3444555554443 22211 1445666666666665 444321 25566666666666665554321 23466677
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCC
Q 007372 442 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPD 521 (606)
Q Consensus 442 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 521 (606)
.|++++|. +++... +. .+++|+.|++++| .+++. ..+ ..+++|+.|++++|. +++... +.
T Consensus 313 ~L~L~~n~-l~~~~~--~~-----~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L~~L~l~~n~-l~~~~~--~~----- 372 (466)
T 1o6v_A 313 YLTLYFNN-ISDISP--VS-----SLTKLQRLFFYNN-KVSDV--SSL-ANLTNINWLSAGHNQ-ISDLTP--LA----- 372 (466)
T ss_dssp EEECCSSC-CSCCGG--GG-----GCTTCCEEECCSS-CCCCC--GGG-TTCTTCCEEECCSSC-CCBCGG--GT-----
T ss_pred EEECcCCc-CCCchh--hc-----cCccCCEeECCCC-ccCCc--hhh-ccCCCCCEEeCCCCc-cCccch--hh-----
Confidence 77776665 333221 22 4667777777776 44432 222 356777777777776 543221 22
Q ss_pred cccCCCCCEEeccCCC
Q 007372 522 QEKSKQLRRLDLCNCI 537 (606)
Q Consensus 522 ~~~~~~L~~L~l~~c~ 537 (606)
.+++|++|++++|.
T Consensus 373 --~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 373 --NLTRITQLGLNDQA 386 (466)
T ss_dssp --TCTTCCEEECCCEE
T ss_pred --cCCCCCEEeccCCc
Confidence 47777777777774
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=9.8e-24 Score=228.50 Aligned_cols=358 Identities=13% Similarity=0.076 Sum_probs=221.3
Q ss_pred HHHHhCCCCceeeeeeccCccc----------------ccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccc
Q 007372 140 IMLTSCLQLESLSLKIRGFGVE----------------VDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLM 203 (606)
Q Consensus 140 ~~~~~~~~L~~L~l~~~~~~~~----------------~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (606)
..+..+++|+.|+++.+..... ..+..+. ...+++|+.|+++++...
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~---f~~L~~L~~L~Ls~N~l~-------------- 504 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS---WSNLKDLTDVELYNCPNM-------------- 504 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC---GGGCTTCCEEEEESCTTC--------------
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh---hccCCCCCEEECcCCCCC--------------
Confidence 4466788888888886431010 0111111 113478999999876421
Q ss_pred cccCcccccccccCCCCccEEecccCC-CCH-HHHHHHH------hhCCCCCEEEcCCCCCCCcccccccChhHHhhccC
Q 007372 204 ETVQPPILTSSYYSSFNLRSLSLVLDV-ITD-ELLITIT------ASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGS 275 (606)
Q Consensus 204 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~l~~l~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 275 (606)
+..+..+.++++|++|+++.+. ++. .....+. ..+++|+.|++++|... .++. ...+..
T Consensus 505 -----~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~------~ip~--~~~l~~ 571 (876)
T 4ecn_A 505 -----TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE------EFPA--SASLQK 571 (876)
T ss_dssp -----CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC------BCCC--HHHHTT
T ss_pred -----ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC------ccCC--hhhhhc
Confidence 1123345568899999999886 765 3332222 23468999999987542 1221 124678
Q ss_pred CCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCC-CcEEEEcCCCCCCHHH
Q 007372 276 CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHS-LKKFEVRSASFLSDLA 354 (606)
Q Consensus 276 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 354 (606)
+++|+.|+++++... .+. ....+++|+.|+++++ .++ .+...+..+++ |+.|+++++.. . .
T Consensus 572 L~~L~~L~Ls~N~l~------~lp------~~~~L~~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~L-~--~ 633 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR------HLE------AFGTNVKLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNKL-K--Y 633 (876)
T ss_dssp CTTCCEEECTTSCCC------BCC------CCCTTSEESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSCC-C--S
T ss_pred CCCCCEEECCCCCcc------cch------hhcCCCcceEEECcCC-ccc--cchHHHhhccccCCEEECcCCCC-C--c
Confidence 889999999887531 111 1235688999999988 444 22222445677 99999998753 2 1
Q ss_pred HHHHHcCC--CCccEEEccCCCCCCHHHH---HHhc--CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCCh
Q 007372 355 FHDLTGVP--CALVEVRLLWCRLITSETV---KKLA--SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITD 427 (606)
Q Consensus 355 ~~~l~~~~--~~L~~L~l~~~~~l~~~~~---~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 427 (606)
+....... ++|+.|++++|. +..... ..+. .+++|+.|++++| .++......+..+++|+.|++++|.++.
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTS 711 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred CchhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCc
Confidence 11222222 349999999987 433211 0111 3458999999998 6665444445578999999999997763
Q ss_pred HHHHHH------HhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEe
Q 007372 428 SGLSIL------AQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCV 501 (606)
Q Consensus 428 ~~~~~l------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 501 (606)
.....+ ..++++|+.|++++|. ++. +.... ....+++|+.|++++| .++.. ...+ ..+++|+.|++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~--lp~~l--~~~~l~~L~~L~Ls~N-~L~~l-p~~l-~~L~~L~~L~L 783 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNK-LTS--LSDDF--RATTLPYLSNMDVSYN-CFSSF-PTQP-LNSSQLKAFGI 783 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSC-CCC--CCGGG--STTTCTTCCEEECCSS-CCSSC-CCGG-GGCTTCCEEEC
T ss_pred cChHHhccccccccccCCccEEECCCCC-Ccc--chHHh--hhccCCCcCEEEeCCC-CCCcc-chhh-hcCCCCCEEEC
Confidence 211111 0122389999999996 552 22111 0026899999999998 66541 2223 47899999999
Q ss_pred cCCC-----CCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 502 RSCF-----YVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 502 ~~~~-----~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
++|. .+.......+. .+++|++|++++|. ++.. ....+++|+.|++++|++...
T Consensus 784 s~N~~ls~N~l~~~ip~~l~-------~L~~L~~L~Ls~N~-L~~I-----p~~l~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGIT-------TCPSLIQLQIGSND-IRKV-----DEKLTPQLYILDIADNPNISI 842 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTGG-------GCSSCCEEECCSSC-CCBC-----CSCCCSSSCEEECCSCTTCEE
T ss_pred CCCCCcccccccccChHHHh-------cCCCCCEEECCCCC-CCcc-----CHhhcCCCCEEECCCCCCCcc
Confidence 8743 13322222333 58999999999995 5432 222357999999999998765
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2.3e-23 Score=214.24 Aligned_cols=136 Identities=10% Similarity=-0.025 Sum_probs=72.8
Q ss_pred CCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHc
Q 007372 413 RKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA 492 (606)
Q Consensus 413 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 492 (606)
++|+.|++++|.+++..... ...+++|++|++++|. ++......+. .+++|++|++++| .++......+ ..
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~-----~l~~L~~L~Ls~N-~l~~~~~~~~-~~ 345 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNE-INKIDDNAFW-----GLTHLLKLNLSQN-FLGSIDSRMF-EN 345 (455)
T ss_dssp SCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSC-CCEECTTTTT-----TCTTCCEEECCSS-CCCEECGGGG-TT
T ss_pred cCceEEEecCccccccchhh-cccCCCCCEEECCCCc-ccccChhHhc-----CcccCCEEECCCC-ccCCcChhHh-cC
Confidence 56666777666655432211 2235667777776665 4432222222 4566777777666 4443322222 34
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 493 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 493 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
+++|++|++++|. ++......+. .+++|++|++++| .++......+ ..+++|+.|++++|++..+
T Consensus 346 l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 346 LDKLEVLDLSYNH-IRALGDQSFL-------GLPNLKELALDTN-QLKSVPDGIF--DRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTT-------TCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred cccCCEEECCCCc-ccccChhhcc-------ccccccEEECCCC-ccccCCHhHh--ccCCcccEEEccCCCcccC
Confidence 5667777777665 4432222222 4666777777766 3544332222 2466677777777766654
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=1.5e-23 Score=223.53 Aligned_cols=357 Identities=13% Similarity=0.063 Sum_probs=223.6
Q ss_pred HHHHhCCCCceeeeeeccCccc-----c-----------cccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccc
Q 007372 140 IMLTSCLQLESLSLKIRGFGVE-----V-----------DACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLM 203 (606)
Q Consensus 140 ~~~~~~~~L~~L~l~~~~~~~~-----~-----------~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (606)
..+..+++|+.|+++.+..... + .+..+. ...+++|+.|+++++...
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~---~~~l~~L~~L~L~~n~l~-------------- 262 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK---WDNLKDLTDVEVYNCPNL-------------- 262 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC---GGGCTTCCEEEEECCTTC--------------
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh---hcccCCCCEEEecCCcCC--------------
Confidence 4466889999999996541010 0 111211 013488999999887421
Q ss_pred cccCcccccccccCCCCccEEecccCC-CCH-HHHHHHHh-----hCCCCCEEEcCCCCCCCcccccccChhHHhhccCC
Q 007372 204 ETVQPPILTSSYYSSFNLRSLSLVLDV-ITD-ELLITITA-----SLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSC 276 (606)
Q Consensus 204 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~l~~l~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 276 (606)
+..+..+.++++|++|+++.+. ++. .....+.. .+++|++|++++|... .++. ...+..+
T Consensus 263 -----~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~------~ip~--~~~l~~l 329 (636)
T 4eco_A 263 -----TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK------TFPV--ETSLQKM 329 (636)
T ss_dssp -----SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS------SCCC--HHHHTTC
T ss_pred -----ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC------ccCc--hhhhccC
Confidence 1123455668999999999987 776 34444432 2489999999997542 1221 1146788
Q ss_pred CCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCC-CcEEEEcCCCCCCHHHH
Q 007372 277 HHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHS-LKKFEVRSASFLSDLAF 355 (606)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~ 355 (606)
++|++|+++++.... .+. ....+++|+.|+++++ .++ .+...+..+++ |+.|+++++.. +. +
T Consensus 330 ~~L~~L~L~~N~l~g-----~ip------~~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~l-~~--l 392 (636)
T 4eco_A 330 KKLGMLECLYNQLEG-----KLP------AFGSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNKL-KY--I 392 (636)
T ss_dssp TTCCEEECCSCCCEE-----ECC------CCEEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSCC-SS--C
T ss_pred CCCCEEeCcCCcCcc-----chh------hhCCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCcC-cc--c
Confidence 899999999875210 111 1125678999999988 444 22222445677 99999998763 21 1
Q ss_pred HHHHcC--CCCccEEEccCCCCCCHHHHHHhc-------CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCC
Q 007372 356 HDLTGV--PCALVEVRLLWCRLITSETVKKLA-------SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 426 (606)
Q Consensus 356 ~~l~~~--~~~L~~L~l~~~~~l~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 426 (606)
...... +++|+.|++++|. +.......+. .+++|+.|++++| .++......+..+++|++|++++|.++
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred chhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 111122 3479999999887 5544334444 5678999999988 666443344556889999999999776
Q ss_pred hHHHHHHHhc-------CCCccEEEccCCCCCCHHHHHHHHhhcC-CCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcE
Q 007372 427 DSGLSILAQG-------NLPIMNLCLRGCKRVTDKGISHLLCVGG-TISQSLTTLDLGYMPGISDDGILTIAAAGIGIID 498 (606)
Q Consensus 427 ~~~~~~l~~~-------~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~ 498 (606)
..... .... +++|++|++++|. ++. +.... . ..+++|++|++++| .++. ....+ ..+++|++
T Consensus 471 ~i~~~-~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~---~~~~l~~L~~L~Ls~N-~l~~-ip~~~-~~l~~L~~ 540 (636)
T 4eco_A 471 EIPKN-SLKDENENFKNTYLLTSIDLRFNK-LTK--LSDDF---RATTLPYLVGIDLSYN-SFSK-FPTQP-LNSSTLKG 540 (636)
T ss_dssp BCCSS-SSEETTEECTTGGGCCEEECCSSC-CCB--CCGGG---STTTCTTCCEEECCSS-CCSS-CCCGG-GGCSSCCE
T ss_pred CcCHH-HhccccccccccCCccEEECcCCc-CCc--cChhh---hhccCCCcCEEECCCC-CCCC-cChhh-hcCCCCCE
Confidence 32111 1111 2289999999987 552 22111 1 26789999999998 6654 22233 46799999
Q ss_pred EEecCCC-----CCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 499 LCVRSCF-----YVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 499 L~l~~~~-----~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
|++++|. .+.......+. .+++|++|++++|. ++..+. .-+++|+.|++++|++...
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~-------~l~~L~~L~Ls~N~-l~~ip~-----~~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGIT-------LCPSLTQLQIGSND-IRKVNE-----KITPNISVLDIKDNPNISI 602 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGG-------GCSSCCEEECCSSC-CCBCCS-----CCCTTCCEEECCSCTTCEE
T ss_pred EECCCCcccccCcccccChHHHh-------cCCCCCEEECCCCc-CCccCH-----hHhCcCCEEECcCCCCccc
Confidence 9996532 12222222333 58899999999994 543221 2347899999999987654
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.8e-23 Score=214.97 Aligned_cols=333 Identities=15% Similarity=0.112 Sum_probs=189.1
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
.++|++|+++++.+.... +..+..+++|++|++++|.... .+ ....+..+++|++|+++++.. ..
T Consensus 29 ~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~-----~i---~~~~~~~l~~L~~L~Ls~n~l------~~ 93 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGL-----VI---RNNTFRGLSSLIILKLDYNQF------LQ 93 (455)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCSTTC-----EE---CTTTTTTCTTCCEEECTTCTT------CE
T ss_pred CCccCEEEecCCccCcCC-hhHhccCccccEEECcCCcccc-----eE---CcccccccccCCEEeCCCCcc------Cc
Confidence 466777777766665421 2222446777777777653210 01 112345566777777766531 11
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHH-HHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFA-AILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI 376 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l 376 (606)
+.... ...+++|++|++++| .+++.... ..+..+++|++|+++++.. .......+...+++|++|+++++. +
T Consensus 94 ~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~-l 166 (455)
T 3v47_A 94 LETGA----FNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFNK-V 166 (455)
T ss_dssp ECTTT----TTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTCC-B
T ss_pred cChhh----ccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCCc-c
Confidence 11111 124566777777766 44432221 1133556677777766532 111111123445667777776665 3
Q ss_pred CHHHHHHhcC--CCCCcEEEccCCCCCChHHH--------HcccCCCCCCEEEccCCCCChHHHHHHHh-----------
Q 007372 377 TSETVKKLAS--SRNLEVLDLGGCKSIADTCL--------RSISCLRKLTALNLTGADITDSGLSILAQ----------- 435 (606)
Q Consensus 377 ~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~i~~~~~~~l~~----------- 435 (606)
.......+.. .++|+.|+++++ .+.+... ..+..+++|+.|++++|.+++.....+..
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred cccChhhhhccccccccccccccC-cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 3322222222 245566666555 3332111 11223455666666666555544433322
Q ss_pred ---------------------------cCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHH
Q 007372 436 ---------------------------GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILT 488 (606)
Q Consensus 436 ---------------------------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 488 (606)
..++|+.|++++|. ++......+ ..+++|++|++++| .+++.....
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~ 318 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVF-----SHFTDLEQLTLAQN-EINKIDDNA 318 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTT-----TTCTTCCEEECTTS-CCCEECTTT
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhc-----ccCCCCCEEECCCC-cccccChhH
Confidence 12567777777775 443322222 36889999999998 666543333
Q ss_pred HHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 489 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 489 l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
+ ..+++|++|++++|. ++......+. .+++|++|++++| .++......+. .+++|+.|++++|++...
T Consensus 319 ~-~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 319 F-WGLTHLLKLNLSQNF-LGSIDSRMFE-------NLDKLEVLDLSYN-HIRALGDQSFL--GLPNLKELALDTNQLKSV 386 (455)
T ss_dssp T-TTCTTCCEEECCSSC-CCEECGGGGT-------TCTTCCEEECCSS-CCCEECTTTTT--TCTTCCEEECCSSCCSCC
T ss_pred h-cCcccCCEEECCCCc-cCCcChhHhc-------CcccCCEEECCCC-cccccChhhcc--ccccccEEECCCCccccC
Confidence 3 467999999999997 6553333333 5899999999999 57665444443 689999999999998765
Q ss_pred ChhHHHHHhhcCCceE-Eeeccccccccc
Q 007372 569 GNPVITEIHNERPWLT-FCLDGCEIGCHD 596 (606)
Q Consensus 569 ~~~~~~~~~~~~~~l~-~~~~g~~~~~~~ 596 (606)
.. ......+.++ +++.||++.|..
T Consensus 387 ~~----~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 387 PD----GIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CT----TTTTTCTTCCEEECCSSCBCCCT
T ss_pred CH----hHhccCCcccEEEccCCCcccCC
Confidence 22 2234556777 999999999984
No 33
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.6e-19 Score=180.91 Aligned_cols=253 Identities=17% Similarity=0.166 Sum_probs=173.3
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHH---HcCCCCcEEEEcCCC--CCC---HHHH---HHHHcCCCCccEEEccCCCCCC
Q 007372 309 GCKGLESVRLGGFSKVSDAGFAAIL---LSCHSLKKFEVRSAS--FLS---DLAF---HDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~---~~~~---~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
.+++|++|++++| .+++.+...+. ..+++|+.|+++++. .++ ...+ ......+++|++|++++|. ++
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CC
Confidence 4566777777766 56655544432 346677777776652 121 1122 2233567888888888876 66
Q ss_pred HHH----HHHhcCCCCCcEEEccCCCCCChHHHHccc----CC---------CCCCEEEccCCCCChHHHHHH---HhcC
Q 007372 378 SET----VKKLASSRNLEVLDLGGCKSIADTCLRSIS----CL---------RKLTALNLTGADITDSGLSIL---AQGN 437 (606)
Q Consensus 378 ~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~i~~~~~~~l---~~~~ 437 (606)
..+ ...+..+++|++|++++| .+++.+...+. .+ ++|++|++++|.+++.++..+ ...+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 533 334557889999999888 67665544443 33 889999999998886666543 3368
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHH---HcCCCCcEEEecCCCCCCHHHHHH
Q 007372 438 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASVEA 514 (606)
Q Consensus 438 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~ 514 (606)
++|++|++++|. +++.++..+.......+++|+.|++++| .+++.+...++ ..+++|++|++++|. +++.+...
T Consensus 187 ~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA 263 (386)
T ss_dssp TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH
T ss_pred CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH
Confidence 899999999986 8877765554322246889999999998 78766655554 456899999999997 99887776
Q ss_pred HHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhc---CCCCCceEEEeeceeccCCC
Q 007372 515 LARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR---PSFRGLHWLGIGQTRLASKG 569 (606)
Q Consensus 515 l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~~L~~L~l~~~~~~~~~ 569 (606)
++..+. .+.+++|++|++++| .++..++..+.. .++|+|+.|++++|++....
T Consensus 264 l~~~l~-~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFS-KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHH-TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHh-hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 665321 002789999999999 588854443321 34799999999999998774
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=2.3e-22 Score=212.13 Aligned_cols=451 Identities=16% Similarity=0.094 Sum_probs=260.6
Q ss_pred ccCceecccCCCChhhhhhhhcCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhCCC
Q 007372 68 ALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQ 147 (606)
Q Consensus 68 ~L~~L~l~~~~l~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~ 147 (606)
..++++++++.++..+... .++|++|+++++. ++......+ ..+++|++|+++.+...... . ..+..+++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~--~~~L~~L~Ls~N~-i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~-~-----~~~~~l~~ 101 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL--PPRTKALSLSQNS-ISELRMPDI-SFLSELRVLRLSHNRIRSLD-F-----HVFLFNQD 101 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS--CTTCCEEECCSSC-CCCCCGGGT-TTCTTCCEEECCSCCCCEEC-T-----TTTTTCTT
T ss_pred CCcEEEcCCCCCccCCCCC--CCCcCEEECCCCC-ccccChhhh-ccCCCccEEECCCCCCCcCC-H-----HHhCCCCC
Confidence 3455666655555433211 2566666666653 221111111 45667777777555321110 1 22446778
Q ss_pred CceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEecc
Q 007372 148 LESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLV 227 (606)
Q Consensus 148 L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 227 (606)
|+.|+++++. +.. +... .+++|+.|+++++....+. .+..+.++++|++|+++
T Consensus 102 L~~L~Ls~N~----l~~--lp~~---~l~~L~~L~Ls~N~l~~l~------------------~p~~~~~l~~L~~L~L~ 154 (562)
T 3a79_B 102 LEYLDVSHNR----LQN--ISCC---PMASLRHLDLSFNDFDVLP------------------VCKEFGNLTKLTFLGLS 154 (562)
T ss_dssp CCEEECTTSC----CCE--ECSC---CCTTCSEEECCSSCCSBCC------------------CCGGGGGCTTCCEEEEE
T ss_pred CCEEECCCCc----CCc--cCcc---ccccCCEEECCCCCccccC------------------chHhhcccCcccEEecC
Confidence 8888888643 111 1111 3589999999988654321 11234568999999999
Q ss_pred cCCCCHHHHHHHHhhCCCC--CEEEcCCCCC--CC--cccccccC--------------h-hHHhhccCCCCccEEEecc
Q 007372 228 LDVITDELLITITASLPFL--VELDLEDRPN--TE--PLARLDLT--------------S-SGLQSLGSCHHLTGLSLTR 286 (606)
Q Consensus 228 ~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~--~~--~~~~~~~~--------------~-~~~~~l~~~~~L~~L~l~~ 286 (606)
.+.+....+ ..+++| ++|++++|.. .. +..+..+. . ..-..+..+++|+.+++++
T Consensus 155 ~n~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 230 (562)
T 3a79_B 155 AAKFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230 (562)
T ss_dssp CSBCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEEC
T ss_pred CCccccCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccc
Confidence 988876333 335666 9999998754 21 11111111 0 0000122456777777765
Q ss_pred ccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHH--cCCCCcEEEEcCCCC---CCHHHHHHHHcC
Q 007372 287 CRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL--SCHSLKKFEVRSASF---LSDLAFHDLTGV 361 (606)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~~l~~~ 361 (606)
+.. ....+ .+........++|+.+++.++ .+++..+..+.. ..++|++|+++++.. +....+......
T Consensus 231 n~~----~~~~l--~~~~~~l~~l~~L~~L~L~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~ 303 (562)
T 3a79_B 231 NDE----NCQRL--MTFLSELTRGPTLLNVTLQHI-ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303 (562)
T ss_dssp CST----THHHH--HHHHHHHHSCSSCEEEEEEEE-EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCS
T ss_pred ccc----ccchH--HHHHHHHhccCcceEEEecCC-cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhccccc
Confidence 420 00001 111122346678888888776 556555544332 235888888887641 111100000122
Q ss_pred CCCccEEEccCCC-CCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 362 PCALVEVRLLWCR-LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 362 ~~~L~~L~l~~~~-~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
++.|+.+++..+. .++...+..+...++|+.|+++++ .+... .....+++|++|++++|.+++..... ...+++|
T Consensus 304 L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n-~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L 379 (562)
T 3a79_B 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT-PFIHM--VCPPSPSSFTFLNFTQNVFTDSVFQG-CSTLKRL 379 (562)
T ss_dssp CCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS-CCCCC--CCCSSCCCCCEEECCSSCCCTTTTTT-CCSCSSC
T ss_pred chheehhhcccceeecChhhhhhhhccCcceEEEccCC-Ccccc--cCccCCCCceEEECCCCccccchhhh-hcccCCC
Confidence 3333333443332 123333333334478999999998 44432 12257899999999999888643322 2458999
Q ss_pred cEEEccCCCCCCHH-HHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhC
Q 007372 441 MNLCLRGCKRVTDK-GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ 519 (606)
Q Consensus 441 ~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 519 (606)
+.|++++|. ++.. .+.... ..+++|++|++++| .++..........+++|++|++++|. +++.. ..
T Consensus 380 ~~L~L~~N~-l~~~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~-- 446 (562)
T 3a79_B 380 QTLILQRNG-LKNFFKVALMT----KNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNM-LTGSV----FR-- 446 (562)
T ss_dssp CEEECCSSC-CCBTTHHHHTT----TTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSC-CCGGG----GS--
T ss_pred CEEECCCCC-cCCcccchhhh----cCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCC-CCcch----hh--
Confidence 999999997 5542 222222 37899999999998 55431111122457999999999998 76422 22
Q ss_pred CCcccC-CCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 520 PDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 520 ~~~~~~-~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
.+ ++|++|++++| .++..+... ..+++|+.|++++|++...... .....+.++ +++.||++.|.
T Consensus 447 ----~l~~~L~~L~L~~N-~l~~ip~~~---~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 447 ----CLPPKVKVLDLHNN-RIMSIPKDV---THLQALQELNVASNQLKSVPDG----VFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ----SCCTTCSEEECCSS-CCCCCCTTT---TSSCCCSEEECCSSCCCCCCTT----STTTCTTCCCEECCSCCBCCC
T ss_pred ----hhcCcCCEEECCCC-cCcccChhh---cCCCCCCEEECCCCCCCCCCHH----HHhcCCCCCEEEecCCCcCCC
Confidence 34 59999999999 577422212 2589999999999998855211 234557777 99999999998
No 35
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=8e-20 Score=179.71 Aligned_cols=187 Identities=18% Similarity=0.260 Sum_probs=96.4
Q ss_pred CCCccEEEccCCCCCCHHHH-HHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCC-CCChHHHHHHHhcCCC
Q 007372 362 PCALVEVRLLWCRLITSETV-KKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLP 439 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~ 439 (606)
+++|++|++++|. +++..+ ..+..+++|++|++++| .+++.....++.+++|++|++++| .+++.++......+++
T Consensus 92 ~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 92 PFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 3455555555554 443322 23344555555555555 455555555555555555555555 4555555544444555
Q ss_pred ccEEEccCCCCCCHHHHHHHHhhcCCCCC-CCCEEecCCCC-CCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHh
Q 007372 440 IMNLCLRGCKRVTDKGISHLLCVGGTISQ-SLTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 517 (606)
Q Consensus 440 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~-~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 517 (606)
|++|++++|..+++.++.... ..++ +|++|++++|. .+++..+......+++|++|++++|..+++..+..+.
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~----~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~- 244 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAV----AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF- 244 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHH----HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-
T ss_pred CCEEcCCCCCCcChHHHHHHH----HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-
Confidence 556655555335554433333 2345 56666665554 3554444444445556666666555544544444443
Q ss_pred hCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeece
Q 007372 518 KQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQT 563 (606)
Q Consensus 518 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~ 563 (606)
.+++|++|++++|..+++.++..+. .+|+|+.|++++|
T Consensus 245 ------~l~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 ------QLNYLQHLSLSRCYDIIPETLLELG--EIPTLKTLQVFGI 282 (336)
T ss_dssp ------GCTTCCEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTS
T ss_pred ------CCCCCCEeeCCCCCCCCHHHHHHHh--cCCCCCEEeccCc
Confidence 2555666666655545444443332 3555666666655
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=4.4e-22 Score=214.08 Aligned_cols=498 Identities=14% Similarity=0.041 Sum_probs=266.2
Q ss_pred HhhhccccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHH
Q 007372 33 RFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASI 111 (606)
Q Consensus 33 ~~~~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l 111 (606)
..++ ....+.++.|+|+++.++.-. +..+..+++|++|+|++|.++......+. .++|++|+|++|. ++.... ..
T Consensus 44 ~~vP-~~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~-~~ 119 (635)
T 4g8a_A 44 YKIP-DNLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLAL-GA 119 (635)
T ss_dssp SSCC-SSSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECG-GG
T ss_pred CccC-CCCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCH-HH
Confidence 3444 445678999999999876521 22344599999999999999887766666 4999999999984 332111 12
Q ss_pred hhcCCCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccch
Q 007372 112 GHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDA 191 (606)
Q Consensus 112 ~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 191 (606)
...+++|++|+++.+..... .. ..+..+++|+.|+++.+. +........ ....++|+.|+++++....+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l--~~----~~~~~L~~L~~L~Ls~N~----l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASL--EN----FPIGHLKTLKELNVAHNL----IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCS--TT----CCCTTCTTCCEEECCSSC----CCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred hcCCCCCCEEECCCCcCCCC--Ch----hhhhcCcccCeeccccCc----cccCCCchh-hccchhhhhhcccCcccccc
Confidence 26899999999977643221 10 124578999999999754 221111111 12348999999998754332
Q ss_pred -----HHHHHHh--------hcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCC
Q 007372 192 -----FFLIRRI--------GRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTE 258 (606)
Q Consensus 192 -----~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 258 (606)
..+.... +.+....+. ........++.+++..+.............++.++...+.......
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~-----~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQ-----PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEEC-----TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ccccccchhhhhhhhhhhhcccCcccccC-----cccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 1111100 001111111 1112234456677777666665666666677777766553221111
Q ss_pred cccccccChh------------------------HHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCcc
Q 007372 259 PLARLDLTSS------------------------GLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLE 314 (606)
Q Consensus 259 ~~~~~~~~~~------------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 314 (606)
...+...... ....+....+++.+.+.+... ..+.+ ......|+
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~------~~~~~~L~ 331 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI------ERVKD------FSYNFGWQ 331 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE------EECGG------GGSCCCCS
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc------ccccc------cccchhhh
Confidence 0000000000 001112234555555544321 11111 12456788
Q ss_pred EEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHH--HHHHhcCCCCCcE
Q 007372 315 SVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE--TVKKLASSRNLEV 392 (606)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~L~~ 392 (606)
.|++.++ .+..... ..++.|+.+.+..+...... -...+++|+.++++.+. +... .......+.+|+.
T Consensus 332 ~L~l~~~-~~~~~~~----~~l~~L~~l~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~ 401 (635)
T 4g8a_A 332 HLELVNC-KFGQFPT----LKLKSLKRLTFTSNKGGNAF----SEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKY 401 (635)
T ss_dssp EEEEESC-EESSCCC----CBCTTCCEEEEESCCSCCBC----CCCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCE
T ss_pred hhhcccc-cccCcCc----ccchhhhhcccccccCCCCc----ccccccccccchhhccc-cccccccccchhhhhhhhh
Confidence 8888776 2221110 13567777777665321110 01235778888887765 2211 1122335677788
Q ss_pred EEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCE
Q 007372 393 LDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTT 472 (606)
Q Consensus 393 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~ 472 (606)
|++..+ .... ....+..+++|+.+++..++............+++++.++++.|. +.......+ ..+++|+.
T Consensus 402 L~~~~~-~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~-----~~~~~L~~ 473 (635)
T 4g8a_A 402 LDLSFN-GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIF-----NGLSSLEV 473 (635)
T ss_dssp EECCSC-SEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTT-----TTCTTCCE
T ss_pred hhcccc-cccc-ccccccccccccchhhhhccccccccccccccccccccccccccc-ccccccccc-----ccchhhhh
Confidence 877665 2221 112344667777777776633222111222346677777777765 222111111 35677777
Q ss_pred EecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCC
Q 007372 473 LDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSF 552 (606)
Q Consensus 473 L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 552 (606)
|++++|...... .......+++|++|++++|. ++......+. ++++|++|++++| .++......+ ..+
T Consensus 474 L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-------~l~~L~~L~Ls~N-~l~~l~~~~~--~~l 541 (635)
T 4g8a_A 474 LKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-------SLSSLQVLNMSHN-NFFSLDTFPY--KCL 541 (635)
T ss_dssp EECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECTTS-CCCBCCCGGG--TTC
T ss_pred hhhhhccccccc-CchhhhhccccCEEECCCCc-cCCcChHHHc-------CCCCCCEEECCCC-cCCCCChhHH--hCC
Confidence 777776322211 11112355777777777775 5543222232 4777778888777 4555333333 256
Q ss_pred CCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 553 RGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 553 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
++|+.|++++|++.......+..+ .+.++ +++.||++.|+
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~l~~l---~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQELQHF---PSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSCTTCC---CTTCCEEECTTCCBCCS
T ss_pred CCCCEEECCCCcCCCCCHHHHHhh---hCcCCEEEeeCCCCccc
Confidence 777888888777665522222211 13454 77777777776
No 37
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=2.7e-19 Score=179.31 Aligned_cols=255 Identities=18% Similarity=0.153 Sum_probs=191.6
Q ss_pred HHHcCCCCcEEEEcCCCCCCHHHHHHH---HcCCCCccEEEccCCC--CCCHH---HHH----HhcCCCCCcEEEccCCC
Q 007372 332 ILLSCHSLKKFEVRSASFLSDLAFHDL---TGVPCALVEVRLLWCR--LITSE---TVK----KLASSRNLEVLDLGGCK 399 (606)
Q Consensus 332 ~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~--~l~~~---~~~----~l~~~~~L~~L~l~~~~ 399 (606)
.+..+++|+.|+++++. ++......+ ...+++|++|++++|. .+++. ++. .+..+++|++|++++|
T Consensus 27 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n- 104 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN- 104 (386)
T ss_dssp HHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred HHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-
Confidence 35578999999999975 566554443 4578999999999973 23322 232 2357899999999998
Q ss_pred CCChHH----HHcccCCCCCCEEEccCCCCChHHHHHHHhc---C---------CCccEEEccCCCCCCHHHHHHHHhhc
Q 007372 400 SIADTC----LRSISCLRKLTALNLTGADITDSGLSILAQG---N---------LPIMNLCLRGCKRVTDKGISHLLCVG 463 (606)
Q Consensus 400 ~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~---~---------~~L~~L~l~~~~~~~~~~~~~l~~~~ 463 (606)
.+++.+ ...+..+++|++|++++|.+++.+...+... + ++|++|++++|. +++.++..+..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 183 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTF 183 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHH
Confidence 777743 3456789999999999999987766555442 3 899999999997 7766665332100
Q ss_pred CCCCCCCCEEecCCCCCCCHHHHHHHHH----cCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCC
Q 007372 464 GTISQSLTTLDLGYMPGISDDGILTIAA----AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGL 539 (606)
Q Consensus 464 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 539 (606)
..+++|++|++++| .+++.++..+.. .+++|++|++++|. +++.+...++..+. .+++|++|++++| .+
T Consensus 184 -~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~---~~~~L~~L~L~~n-~i 256 (386)
T 2ca6_A 184 -QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALK---SWPNLRELGLNDC-LL 256 (386)
T ss_dssp -HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGG---GCTTCCEEECTTC-CC
T ss_pred -HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHc---cCCCcCEEECCCC-CC
Confidence 25789999999999 899888766655 67999999999998 99877777766554 7899999999999 58
Q ss_pred CHHHHHHhhc----CCCCCceEEEeeceeccCCChhHHHH-HhhcCCceE-Eeeccccccccc
Q 007372 540 SVDSLRWVKR----PSFRGLHWLGIGQTRLASKGNPVITE-IHNERPWLT-FCLDGCEIGCHD 596 (606)
Q Consensus 540 ~~~~~~~l~~----~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~l~-~~~~g~~~~~~~ 596 (606)
+..+...+.. ..+++|+.|++++|++...+...+.. +....|.++ +++.||.+....
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8876554432 34899999999999987643334444 435568787 999999988654
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=3.8e-23 Score=220.36 Aligned_cols=369 Identities=10% Similarity=0.005 Sum_probs=230.8
Q ss_pred ccceeEEeecCCcccchHHHHHHhhccc-ccccCccccccccc--CCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEc
Q 007372 175 PSTIKSLKLQPVLERDAFFLIRRIGRNL-METVQPPILTSSYY--SSFNLRSLSLVLDVITDELLITITASLPFLVELDL 251 (606)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l 251 (606)
+++|+.|+++++......... .+.. ......+..+..+. ++++|++|+++.+.+.... +..+..+++|++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~---~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICE---AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-PTFLKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSS---SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC-CTTTTTCSSCCEEEC
T ss_pred ccCCCEEECcCCccccccccc---cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC-hHHHhcCCCCCEEEC
Confidence 589999999988644310000 0000 00000001344555 7999999999987765522 233356899999999
Q ss_pred CCCCCCCcccccccCh-hHHhhc------cCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCC
Q 007372 252 EDRPNTEPLARLDLTS-SGLQSL------GSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKV 324 (606)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~~~~~l------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 324 (606)
++|.. ++. .....+ ..+++|++|+++++.. ..+.. ......+++|+.|+++++ .+
T Consensus 281 s~n~~--------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l------~~ip~---~~~l~~l~~L~~L~L~~N-~l 342 (636)
T 4eco_A 281 ACNRG--------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNL------KTFPV---ETSLQKMKKLGMLECLYN-QL 342 (636)
T ss_dssp TTCTT--------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC------SSCCC---HHHHTTCTTCCEEECCSC-CC
T ss_pred cCCCC--------CccccchHHHHhhhccccCCCCCEEECCCCcC------CccCc---hhhhccCCCCCEEeCcCC-cC
Confidence 99741 332 122223 3458999999998752 11211 012347889999999998 44
Q ss_pred CHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCC-ccEEEccCCCCCCHHHHHHhcC--CCCCcEEEccCCCCC
Q 007372 325 SDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCA-LVEVRLLWCRLITSETVKKLAS--SRNLEVLDLGGCKSI 401 (606)
Q Consensus 325 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~l~~~~~~~l~~--~~~L~~L~l~~~~~~ 401 (606)
+.. +. .+..+++|+.|+++++.. . .+......+++ |++|+++++. ++. ....+.. +++|+.|++++| .+
T Consensus 343 ~g~-ip-~~~~l~~L~~L~L~~N~l-~--~lp~~l~~l~~~L~~L~Ls~N~-l~~-lp~~~~~~~l~~L~~L~Ls~N-~l 414 (636)
T 4eco_A 343 EGK-LP-AFGSEIKLASLNLAYNQI-T--EIPANFCGFTEQVENLSFAHNK-LKY-IPNIFDAKSVSVMSAIDFSYN-EI 414 (636)
T ss_dssp EEE-CC-CCEEEEEESEEECCSSEE-E--ECCTTSEEECTTCCEEECCSSC-CSS-CCSCCCTTCSSCEEEEECCSS-CT
T ss_pred ccc-hh-hhCCCCCCCEEECCCCcc-c--cccHhhhhhcccCcEEEccCCc-Ccc-cchhhhhcccCccCEEECcCC-cC
Confidence 411 11 234678999999998742 1 11122344677 9999999987 542 1222333 458999999998 66
Q ss_pred ChHHHHccc-------CCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhc---CCCCCCCC
Q 007372 402 ADTCLRSIS-------CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG---GTISQSLT 471 (606)
Q Consensus 402 ~~~~~~~l~-------~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~---~~~~~~L~ 471 (606)
.......+. .+++|+.|++++|.++... ..+...+++|++|++++|. ++......+. +. .+.+++|+
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~-~~~~~~~~l~~L~ 491 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLMGNM-LTEIPKNSLK-DENENFKNTYLLT 491 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC-THHHHTTCCCSEEECCSSC-CSBCCSSSSE-ETTEECTTGGGCC
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcCC-HHHHccCCCCCEEECCCCC-CCCcCHHHhc-cccccccccCCcc
Confidence 654444455 6789999999999887432 2334458999999999997 5421111111 00 01223999
Q ss_pred EEecCCCCCCCHHHHHHHH-HcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCC-----CCCHHHHH
Q 007372 472 TLDLGYMPGISDDGILTIA-AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI-----GLSVDSLR 545 (606)
Q Consensus 472 ~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~-----~l~~~~~~ 545 (606)
.|++++| .++... ..+. ..+++|++|++++|. ++. ....+. .+++|+.|++++|. .+......
T Consensus 492 ~L~Ls~N-~l~~lp-~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~~-------~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 492 SIDLRFN-KLTKLS-DDFRATTLPYLVGIDLSYNS-FSK-FPTQPL-------NSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp EEECCSS-CCCBCC-GGGSTTTCTTCCEEECCSSC-CSS-CCCGGG-------GCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred EEECcCC-cCCccC-hhhhhccCCCcCEEECCCCC-CCC-cChhhh-------cCCCCCEEECCCCcccccCcccccChH
Confidence 9999998 676321 2221 367999999999997 664 112222 58999999996542 23322222
Q ss_pred HhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeeccccccccc
Q 007372 546 WVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 596 (606)
Q Consensus 546 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~~ 596 (606)
.+ ..+++|+.|++++|++... +.. + .+.++ +++.+|++.|..
T Consensus 561 ~l--~~l~~L~~L~Ls~N~l~~i-p~~---~---~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 561 GI--TLCPSLTQLQIGSNDIRKV-NEK---I---TPNISVLDIKDNPNISID 603 (636)
T ss_dssp TG--GGCSSCCEEECCSSCCCBC-CSC---C---CTTCCEEECCSCTTCEEE
T ss_pred HH--hcCCCCCEEECCCCcCCcc-CHh---H---hCcCCEEECcCCCCcccc
Confidence 33 3589999999999998543 111 2 15666 999999998873
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=4.8e-22 Score=205.51 Aligned_cols=328 Identities=19% Similarity=0.135 Sum_probs=213.1
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
.+++++|+++.+.+.... +..+..+++|++|++++|.. +......+..+++|++|+++++.. ..
T Consensus 31 ~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i---------~~~~~~~~~~l~~L~~L~L~~n~l------~~ 94 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIV---------SAVEPGAFNNLFNLRTLGLRSNRL------KL 94 (477)
T ss_dssp CTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCC---------CEECTTTTTTCTTCCEEECCSSCC------CS
T ss_pred CCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCcc---------CEeChhhhhCCccCCEEECCCCcC------Cc
Confidence 578999999998887632 22335689999999998743 222234567889999999998642 11
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
+... ....+++|++|+++++ .+.... ...+..+++|+.|+++++.. .... ......+++|++|++++|. ++
T Consensus 95 ~~~~----~~~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~ 165 (477)
T 2id5_A 95 IPLG----VFTGLSNLTKLDISEN-KIVILL-DYMFQDLYNLKSLEVGDNDL-VYIS-HRAFSGLNSLEQLTLEKCN-LT 165 (477)
T ss_dssp CCTT----SSTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEEECCTTC-CEEC-TTSSTTCTTCCEEEEESCC-CS
T ss_pred cCcc----cccCCCCCCEEECCCC-ccccCC-hhHccccccCCEEECCCCcc-ceeC-hhhccCCCCCCEEECCCCc-Cc
Confidence 2111 1135789999999988 443211 11234678999999988642 1110 1123457889999999886 66
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHH
Q 007372 378 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 457 (606)
Q Consensus 378 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 457 (606)
......+..+++|+.|+++++ .+.......+..+++|+.|++++|...+....... ...+|++|++++|. ++.....
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~ 242 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCN-LTAVPYL 242 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSC-CCSCCHH
T ss_pred ccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCc-ccccCHH
Confidence 555566778899999999887 66655555677888999999988754322111111 23589999998886 5544433
Q ss_pred HHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCC
Q 007372 458 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 458 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 537 (606)
.+. .+++|+.|++++| .++......+ ..+++|++|++++|. ++......+. .+++|++|++++|
T Consensus 243 ~~~-----~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-------~l~~L~~L~L~~N- 306 (477)
T 2id5_A 243 AVR-----HLVYLRFLNLSYN-PISTIEGSML-HELLRLQEIQLVGGQ-LAVVEPYAFR-------GLNYLRVLNVSGN- 306 (477)
T ss_dssp HHT-----TCTTCCEEECCSS-CCCEECTTSC-TTCTTCCEEECCSSC-CSEECTTTBT-------TCTTCCEEECCSS-
T ss_pred Hhc-----CccccCeeECCCC-cCCccChhhc-cccccCCEEECCCCc-cceECHHHhc-------CcccCCEEECCCC-
Confidence 344 6789999999888 5654333223 467889999998886 6543333333 5788999999988
Q ss_pred CCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceEEeecccccccc
Q 007372 538 GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCH 595 (606)
Q Consensus 538 ~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~ 595 (606)
.++......+ ..+++|+.|++++|++..+ ..+..+.... -.+...|+...|.
T Consensus 307 ~l~~~~~~~~--~~l~~L~~L~l~~N~l~c~--c~~~~~~~~~--~~~~~~~~~~~C~ 358 (477)
T 2id5_A 307 QLTTLEESVF--HSVGNLETLILDSNPLACD--CRLLWVFRRR--WRLNFNRQQPTCA 358 (477)
T ss_dssp CCSCCCGGGB--SCGGGCCEEECCSSCEECS--GGGHHHHTTT--TSSCCTTCCCBEE
T ss_pred cCceeCHhHc--CCCcccCEEEccCCCccCc--cchHhHHhhh--hccccCccCceeC
Confidence 4665444333 3578899999999988755 2222222111 1234556666665
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=1.2e-20 Score=204.44 Aligned_cols=370 Identities=10% Similarity=-0.012 Sum_probs=227.7
Q ss_pred ccceeEEeecCCcccch--HHHHHHhhcccccccCccccccccc--CCCCccEEecccCCCCHHHHHHHHhhCCCCCEEE
Q 007372 175 PSTIKSLKLQPVLERDA--FFLIRRIGRNLMETVQPPILTSSYY--SSFNLRSLSLVLDVITDELLITITASLPFLVELD 250 (606)
Q Consensus 175 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~ 250 (606)
+++|+.|+++++..... .... .........+..+..+. ++++|++|+++.+.+.... +..+..+++|+.|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~----~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDW----EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLN 521 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSC----SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEE
T ss_pred CCCCCEEECcCCcCCCCcccccc----cccccccccccCChhhhhccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEE
Confidence 48999999999865541 0000 00000000001233444 7999999999987655422 33446699999999
Q ss_pred cCCCCCCCcccccccChhHHh----hccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCH
Q 007372 251 LEDRPNTEPLARLDLTSSGLQ----SLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSD 326 (606)
Q Consensus 251 l~~~~~~~~~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 326 (606)
+++|...... .++ ..+. .+..+++|+.|+++++.. ..+.. ......+++|+.|+++++ .++.
T Consensus 522 Ls~N~~lsg~---~iP-~~i~~L~~~~~~l~~L~~L~Ls~N~L------~~ip~---~~~l~~L~~L~~L~Ls~N-~l~~ 587 (876)
T 4ecn_A 522 IACNRGISAA---QLK-ADWTRLADDEDTGPKIQIFYMGYNNL------EEFPA---SASLQKMVKLGLLDCVHN-KVRH 587 (876)
T ss_dssp CTTCTTSCHH---HHH-HHHHHHHHCTTTTTTCCEEECCSSCC------CBCCC---HHHHTTCTTCCEEECTTS-CCCB
T ss_pred CcCCCCcccc---cch-HHHHhhhhcccccCCccEEEeeCCcC------CccCC---hhhhhcCCCCCEEECCCC-Cccc
Confidence 9997411100 011 1122 234677999999998752 11221 012347889999999998 4552
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCC-ccEEEccCCCCCCHHHHHHhcCC--CCCcEEEccCCCCCCh
Q 007372 327 AGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCA-LVEVRLLWCRLITSETVKKLASS--RNLEVLDLGGCKSIAD 403 (606)
Q Consensus 327 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~l~~~~~~~l~~~--~~L~~L~l~~~~~~~~ 403 (606)
+. .+..+++|+.|+++++... .+......+++ |+.|++++|. +... ...+... ++|+.|++++| .+..
T Consensus 588 --lp-~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~-L~~l-p~~~~~~~~~~L~~L~Ls~N-~l~g 658 (876)
T 4ecn_A 588 --LE-AFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNK-LKYI-PNIFNAKSVYVMGSVDFSYN-KIGS 658 (876)
T ss_dssp --CC-CCCTTSEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSC-CCSC-CSCCCTTCSSCEEEEECCSS-CTTT
T ss_pred --ch-hhcCCCcceEEECcCCccc---cchHHHhhccccCCEEECcCCC-CCcC-chhhhccccCCCCEEECcCC-cCCC
Confidence 22 3456789999999998632 12222344677 9999999987 5521 1223333 45999999998 5544
Q ss_pred HHH---Hccc--CCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhc---CCCCCCCCEEec
Q 007372 404 TCL---RSIS--CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG---GTISQSLTTLDL 475 (606)
Q Consensus 404 ~~~---~~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~---~~~~~~L~~L~l 475 (606)
... ..+. .+++|+.|++++|.++... ..+...+++|+.|++++|. ++.... .+..+. ...+++|+.|++
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N~-L~~ip~-~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNNL-MTSIPE-NSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSCC-CSCCCT-TSSSCTTSCCTTGGGCCEEEC
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccC-HHHHccCCCCCEEECCCCc-CCccCh-HHhccccccccccCCccEEEC
Confidence 211 1111 4568999999999887432 2334468999999999986 542111 111000 012349999999
Q ss_pred CCCCCCCHHHHHHHH-HcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCC-----CCCHHHHHHhhc
Q 007372 476 GYMPGISDDGILTIA-AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI-----GLSVDSLRWVKR 549 (606)
Q Consensus 476 ~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~l~~ 549 (606)
++| .++.. ...+. ..+++|+.|++++|. ++.. ...+. .+++|+.|++++|+ .+.......+
T Consensus 736 s~N-~L~~l-p~~l~~~~l~~L~~L~Ls~N~-L~~l-p~~l~-------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l-- 802 (876)
T 4ecn_A 736 RFN-KLTSL-SDDFRATTLPYLSNMDVSYNC-FSSF-PTQPL-------NSSQLKAFGIRHQRDAEGNRILRQWPTGI-- 802 (876)
T ss_dssp CSS-CCCCC-CGGGSTTTCTTCCEEECCSSC-CSSC-CCGGG-------GCTTCCEEECCCCBCTTCCBCCCCCCTTG--
T ss_pred CCC-CCccc-hHHhhhccCCCcCEEEeCCCC-CCcc-chhhh-------cCCCCCEEECCCCCCcccccccccChHHH--
Confidence 999 67632 12221 367999999999997 6641 11222 68999999998743 2332222233
Q ss_pred CCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 550 PSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 550 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
..+++|+.|++++|++... +.. + .+.|+ +++.+|++...
T Consensus 803 ~~L~~L~~L~Ls~N~L~~I-p~~---l---~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDIRKV-DEK---L---TPQLYILDIADNPNISI 842 (876)
T ss_dssp GGCSSCCEEECCSSCCCBC-CSC---C---CSSSCEEECCSCTTCEE
T ss_pred hcCCCCCEEECCCCCCCcc-CHh---h---cCCCCEEECCCCCCCcc
Confidence 3589999999999998433 111 2 24566 99999988665
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=1.2e-20 Score=189.39 Aligned_cols=312 Identities=13% Similarity=0.054 Sum_probs=193.8
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
+++|++|+++++.+...... .+..+++|++|++++|.. +......+..+++|++|+++++.. ..
T Consensus 68 l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~~L~~L~L~~n~l------~~ 131 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAI---------RYLPPHVFQNVPLLTVLVLERNDL------SS 131 (390)
T ss_dssp CCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCC---------CCCCTTTTTTCTTCCEEECCSSCC------CC
T ss_pred cccCcEEECCCCcccccChh-hccCCCCcCEEECCCCCC---------CcCCHHHhcCCCCCCEEECCCCcc------Cc
Confidence 67777777777666542111 224567777777777533 111122355667777777776642 11
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
+... +...+++|++|+++++ .++.... ..+..+++|+.|+++++.. +... ...+++|+.|+++++. ++
T Consensus 132 l~~~----~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~----~~~l~~L~~L~l~~n~-l~ 199 (390)
T 3o6n_A 132 LPRG----IFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNLQLSSNRL-THVD----LSLIPSLFHANVSYNL-LS 199 (390)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCCBCCT-TTTSSCTTCCEEECCSSCC-SBCC----GGGCTTCSEEECCSSC-CS
T ss_pred CCHH----HhcCCCCCcEEECCCC-ccCccCh-hhccCCCCCCEEECCCCcC-Cccc----cccccccceeeccccc-cc
Confidence 1111 1125677778877776 3332111 1123567888888877642 2111 2346788888888775 33
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHH
Q 007372 378 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 457 (606)
Q Consensus 378 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 457 (606)
.+...++|+.|+++++ .+.... ....++|+.|++++|.+++. .....+++|++|++++|. ++.....
T Consensus 200 -----~~~~~~~L~~L~l~~n-~l~~~~---~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~ 266 (390)
T 3o6n_A 200 -----TLAIPIAVEELDASHN-SINVVR---GPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYH 266 (390)
T ss_dssp -----EEECCSSCSEEECCSS-CCCEEE---CCCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEEESG
T ss_pred -----ccCCCCcceEEECCCC-eeeecc---ccccccccEEECCCCCCccc---HHHcCCCCccEEECCCCc-CCCcChh
Confidence 2345678999999887 555431 12457899999999988764 233468899999999986 5544333
Q ss_pred HHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCC
Q 007372 458 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 458 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 537 (606)
.+. .+++|++|++++| .++... .....+++|++|++++|. ++... ..+. .+++|++|++++|.
T Consensus 267 ~~~-----~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n~-l~~~~-~~~~-------~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 267 PFV-----KMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVE-RNQP-------QFDRLENLYLDHNS 329 (390)
T ss_dssp GGT-----TCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCG-GGHH-------HHTTCSEEECCSSC
T ss_pred Hcc-----ccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCCc-ceecC-cccc-------ccCcCCEEECCCCc
Confidence 343 6889999999998 565421 111357899999999997 65321 1233 37889999999995
Q ss_pred CCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceEEeecccccccccce
Q 007372 538 GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGW 598 (606)
Q Consensus 538 ~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~ 598 (606)
++... ...+++|+.|++++|++..+ ...++....+. ....+.+..|...+
T Consensus 330 -i~~~~-----~~~~~~L~~L~l~~N~~~~~---~~~~~~~~~~~--~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 330 -IVTLK-----LSTHHTLKNLTLSHNDWDCN---SLRALFRNVAR--PAVDDADQHCKIDY 379 (390)
T ss_dssp -CCCCC-----CCTTCCCSEEECCSSCEEHH---HHHHHTTTCCT--TTBCCCCSCCCTTC
T ss_pred -cceeC-----chhhccCCEEEcCCCCccch---hHHHHHHHHHh--hcccccCceecccc
Confidence 65542 24688999999999997654 33344333332 33445566666443
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=2.5e-21 Score=200.15 Aligned_cols=290 Identities=16% Similarity=0.071 Sum_probs=179.8
Q ss_pred ccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCC
Q 007372 215 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 294 (606)
Q Consensus 215 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 294 (606)
+.++++|++|+++.+.+.... +..+..+++|++|++++|.. +......+..+++|++|+++++..
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~~L~~L~Ls~n~i----- 116 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRL---------KLIPLGVFTGLSNLTKLDISENKI----- 116 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC---------CSCCTTSSTTCTTCCEEECTTSCC-----
T ss_pred ccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcC---------CccCcccccCCCCCCEEECCCCcc-----
Confidence 344677777777766655421 12224567777777776532 111112345667777777776532
Q ss_pred ccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 007372 295 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 374 (606)
Q Consensus 295 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 374 (606)
..+... ....+++|++|+++++ .++..... .+..+++|+.|+++++.. ... .......+++|+.|+++++.
T Consensus 117 -~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l-~~~-~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 117 -VILLDY----MFQDLYNLKSLEVGDN-DLVYISHR-AFSGLNSLEQLTLEKCNL-TSI-PTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp -CEECTT----TTTTCTTCCEEEECCT-TCCEECTT-SSTTCTTCCEEEEESCCC-SSC-CHHHHTTCTTCCEEEEESCC
T ss_pred -ccCChh----HccccccCCEEECCCC-ccceeChh-hccCCCCCCEEECCCCcC-ccc-ChhHhcccCCCcEEeCCCCc
Confidence 111111 1125667777777766 33321111 123567888888887642 111 12234567888888888876
Q ss_pred CCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHH
Q 007372 375 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 454 (606)
Q Consensus 375 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 454 (606)
+.......+..+++|+.|++++|..+.... .......+|+.|++++|.++......+ ..+++|+.|++++|. ++..
T Consensus 188 -i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~ 263 (477)
T 2id5_A 188 -INAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSITHCNLTAVPYLAV-RHLVYLRFLNLSYNP-ISTI 263 (477)
T ss_dssp -CCEECTTCSCSCTTCCEEEEECCTTCCEEC-TTTTTTCCCSEEEEESSCCCSCCHHHH-TTCTTCCEEECCSSC-CCEE
T ss_pred -CcEeChhhcccCcccceeeCCCCccccccC-cccccCccccEEECcCCcccccCHHHh-cCccccCeeECCCCc-CCcc
Confidence 554444456688999999999985444322 222345589999999998876543333 458999999999997 5543
Q ss_pred HHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEecc
Q 007372 455 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 534 (606)
Q Consensus 455 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~ 534 (606)
....+ ..+++|+.|++++| .++......+ ..+++|++|++++|. ++......+. .+++|++|+++
T Consensus 264 ~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~l~ 328 (477)
T 2id5_A 264 EGSML-----HELLRLQEIQLVGG-QLAVVEPYAF-RGLNYLRVLNVSGNQ-LTTLEESVFH-------SVGNLETLILD 328 (477)
T ss_dssp CTTSC-----TTCTTCCEEECCSS-CCSEECTTTB-TTCTTCCEEECCSSC-CSCCCGGGBS-------CGGGCCEEECC
T ss_pred Chhhc-----cccccCCEEECCCC-ccceECHHHh-cCcccCCEEECCCCc-CceeCHhHcC-------CCcccCEEEcc
Confidence 33223 36899999999998 6665433333 467999999999997 6643322222 57899999999
Q ss_pred CCCCCCHHHHHHh
Q 007372 535 NCIGLSVDSLRWV 547 (606)
Q Consensus 535 ~c~~l~~~~~~~l 547 (606)
+|+...+-...++
T Consensus 329 ~N~l~c~c~~~~~ 341 (477)
T 2id5_A 329 SNPLACDCRLLWV 341 (477)
T ss_dssp SSCEECSGGGHHH
T ss_pred CCCccCccchHhH
Confidence 9974334333343
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=1.1e-20 Score=192.28 Aligned_cols=344 Identities=15% Similarity=0.093 Sum_probs=174.5
Q ss_pred CCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhh--------------cCCcceEeccCCCCCcHH
Q 007372 41 LPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFL--------------TPRIRELNLWCCSSLSYQ 106 (606)
Q Consensus 41 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~--------------~~~L~~L~l~~~~~~~~~ 106 (606)
.+.+++|+++++.+. .++.....+++|++|+++.+.+.......+. ..++++|++++|. ++
T Consensus 10 ~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~-- 84 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LS-- 84 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CS--
T ss_pred cccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cc--
Confidence 357788888888773 2554455689999999977655432222111 1356777777763 22
Q ss_pred HHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCC
Q 007372 107 ILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPV 186 (606)
Q Consensus 107 ~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 186 (606)
+++ ...++|++|+++.+...+ +. ...++|+.|+++.+. +.. +.. ..++|+.|+++++
T Consensus 85 ~lp---~~~~~L~~L~l~~n~l~~--lp--------~~~~~L~~L~l~~n~----l~~--l~~----~~~~L~~L~L~~n 141 (454)
T 1jl5_A 85 SLP---ELPPHLESLVASCNSLTE--LP--------ELPQSLKSLLVDNNN----LKA--LSD----LPPLLEYLGVSNN 141 (454)
T ss_dssp CCC---SCCTTCSEEECCSSCCSS--CC--------CCCTTCCEEECCSSC----CSC--CCS----CCTTCCEEECCSS
T ss_pred cCC---CCcCCCCEEEccCCcCCc--cc--------cccCCCcEEECCCCc----cCc--ccC----CCCCCCEEECcCC
Confidence 111 223577788876553322 11 123677777777532 111 111 1257777777776
Q ss_pred cccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccC
Q 007372 187 LERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLT 266 (606)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 266 (606)
....++ .+.++++|++|+++++.+.. +....++|++|++++|... .
T Consensus 142 ~l~~lp---------------------~~~~l~~L~~L~l~~N~l~~-----lp~~~~~L~~L~L~~n~l~------~-- 187 (454)
T 1jl5_A 142 QLEKLP---------------------ELQNSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNNQLE------E-- 187 (454)
T ss_dssp CCSSCC---------------------CCTTCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCS------S--
T ss_pred CCCCCc---------------------ccCCCCCCCEEECCCCcCcc-----cCCCcccccEEECcCCcCC------c--
Confidence 433221 23457778888887766653 1122457888888776431 1
Q ss_pred hhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcC
Q 007372 267 SSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRS 346 (606)
Q Consensus 267 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 346 (606)
+..+..+++|++|+++++... .+ ....++|++|+++++ .++. +.. +..+++|+.|++++
T Consensus 188 ---l~~~~~l~~L~~L~l~~N~l~------~l--------~~~~~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 188 ---LPELQNLPFLTAIYADNNSLK------KL--------PDLPLSLESIVAGNN-ILEE--LPE-LQNLPFLTTIYADN 246 (454)
T ss_dssp ---CCCCTTCTTCCEEECCSSCCS------SC--------CCCCTTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCS
T ss_pred ---CccccCCCCCCEEECCCCcCC------cC--------CCCcCcccEEECcCC-cCCc--ccc-cCCCCCCCEEECCC
Confidence 123566777888888776421 11 112247777777776 3331 111 33567777777777
Q ss_pred CCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCC
Q 007372 347 ASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 425 (606)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 425 (606)
+.... +....++|+.|++++|. +.. +. ..++|+.|++++| .++.. .. -.++|+.|++++|.+
T Consensus 247 N~l~~------l~~~~~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~ls~N-~l~~l--~~--~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 247 NLLKT------LPDLPPSLEALNVRDNY-LTD-----LPELPQSLTFLDVSEN-IFSGL--SE--LPPNLYYLNASSNEI 309 (454)
T ss_dssp SCCSS------CCSCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSEE--SC--CCTTCCEEECCSSCC
T ss_pred CcCCc------ccccccccCEEECCCCc-ccc-----cCcccCcCCEEECcCC-ccCcc--cC--cCCcCCEEECcCCcC
Confidence 64211 11234677777777765 332 11 2466777777776 44431 11 125677777777766
Q ss_pred ChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCC
Q 007372 426 TDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 505 (606)
Q Consensus 426 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 505 (606)
+.. ....++|++|++++|. ++. +. ..+++|+.|++++| .++... . .+++|++|++++|.
T Consensus 310 ~~i-----~~~~~~L~~L~Ls~N~-l~~-----lp----~~~~~L~~L~L~~N-~l~~lp--~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 310 RSL-----CDLPPSLEELNVSNNK-LIE-----LP----ALPPRLERLIASFN-HLAEVP--E---LPQNLKQLHVEYNP 368 (454)
T ss_dssp SEE-----CCCCTTCCEEECCSSC-CSC-----CC----CCCTTCCEEECCSS-CCSCCC--C---CCTTCCEEECCSSC
T ss_pred Ccc-----cCCcCcCCEEECCCCc-ccc-----cc----ccCCcCCEEECCCC-cccccc--c---hhhhccEEECCCCC
Confidence 541 1112467777777765 332 22 23467777777776 444211 1 34677777777765
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=3.8e-21 Score=206.79 Aligned_cols=461 Identities=15% Similarity=0.055 Sum_probs=263.8
Q ss_pred cccCceecccCCCChhhhhhhh-cCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHHhC
Q 007372 67 KALCSLTLNCLRLQDHSLCAFL-TPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSC 145 (606)
Q Consensus 67 ~~L~~L~l~~~~l~~~~l~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~~~ 145 (606)
+.+++|+|++|.++......+. .++|++|+|++|. ++.... .....+++|++|+|+.+.... +. ...+.++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~-~~f~~L~~L~~L~Ls~N~l~~--l~----~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNPIQS--LA----LGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCCCCE--EC----GGGGTTC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcCh-hHhcCCCCCCEEEccCCcCCC--CC----HHHhcCC
Confidence 4799999999999987766665 5999999999884 331111 112578999999997764321 11 0235678
Q ss_pred CCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEe
Q 007372 146 LQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLS 225 (606)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 225 (606)
++|++|+++.+.. ..+.+..|.. +++|+.|+++++...... .+..+..+++|++|+
T Consensus 124 ~~L~~L~Ls~N~l-~~l~~~~~~~-----L~~L~~L~Ls~N~l~~~~------------------~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 124 SSLQKLVAVETNL-ASLENFPIGH-----LKTLKELNVAHNLIQSFK------------------LPEYFSNLTNLEHLD 179 (635)
T ss_dssp TTCCEEECTTSCC-CCSTTCCCTT-----CTTCCEEECCSSCCCCCC------------------CCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcC-CCCChhhhhc-----CcccCeeccccCccccCC------------------Cchhhccchhhhhhc
Confidence 9999999996431 1222223333 489999999887543211 112334589999999
Q ss_pred cccCCCCH---HHHHHHHhhCCCCCEEEcCCCCCCCc--cccc-----------cc-Ch-hHHhhccCCCCccEEEeccc
Q 007372 226 LVLDVITD---ELLITITASLPFLVELDLEDRPNTEP--LARL-----------DL-TS-SGLQSLGSCHHLTGLSLTRC 287 (606)
Q Consensus 226 l~~~~~~~---~~l~~l~~~~~~L~~L~l~~~~~~~~--~~~~-----------~~-~~-~~~~~l~~~~~L~~L~l~~~ 287 (606)
++.+.+.. ..+..+.........++++.+....- .... .. .. .....+..+..++...+...
T Consensus 180 L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 180 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccc
Confidence 99877654 23444433223445677666543210 0000 00 00 00111223444444333211
Q ss_pred cccCCCCccccChHHH-----------------------HHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEE
Q 007372 288 RHNHQGTFKRVNDMGM-----------------------FLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEV 344 (606)
Q Consensus 288 ~~~~~~~~~~~~~~~l-----------------------~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 344 (606)
...............+ ........+++.+.+.++....... ...+..|+.|++
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~L~~L~l 335 (635)
T 4g8a_A 260 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLEL 335 (635)
T ss_dssp CCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG----GGSCCCCSEEEE
T ss_pred ccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc----cccchhhhhhhc
Confidence 1000000000000000 0001122345555554431111011 224578889988
Q ss_pred cCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHH--HHcccCCCCCCEEEccC
Q 007372 345 RSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTC--LRSISCLRKLTALNLTG 422 (606)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~ 422 (606)
.++..... ....++.|+.+.+..+.. .. ......+++|+.|+++.+ .+.... ......+.+|+.+++..
T Consensus 336 ~~~~~~~~-----~~~~l~~L~~l~l~~n~~-~~--~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~~~~ 406 (635)
T 4g8a_A 336 VNCKFGQF-----PTLKLKSLKRLTFTSNKG-GN--AFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKYLDLSF 406 (635)
T ss_dssp ESCEESSC-----CCCBCTTCCEEEEESCCS-CC--BCCCCBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCEEECCS
T ss_pred ccccccCc-----CcccchhhhhcccccccC-CC--Ccccccccccccchhhcc-ccccccccccchhhhhhhhhhhccc
Confidence 87632100 012467889998887652 11 112335899999999987 443221 22334678899999988
Q ss_pred CCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEec
Q 007372 423 ADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVR 502 (606)
Q Consensus 423 ~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 502 (606)
+.+.... .....++.|+.+++..+..........+ ..+++++.++++.+ .+...... ....++.|+.|+++
T Consensus 407 ~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~-----~~l~~l~~l~ls~n-~l~~~~~~-~~~~~~~L~~L~Ls 477 (635)
T 4g8a_A 407 NGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVF-----LSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMA 477 (635)
T ss_dssp CSEEEEC--SCCTTCTTCCEEECTTSEEESTTSSCTT-----TTCTTCCEEECTTS-CCEECCTT-TTTTCTTCCEEECT
T ss_pred ccccccc--ccccccccccchhhhhcccccccccccc-----cccccccccccccc-cccccccc-ccccchhhhhhhhh
Confidence 7543211 1123578999999988764333222222 36889999999988 44322211 22467899999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCc
Q 007372 503 SCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPW 582 (606)
Q Consensus 503 ~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 582 (606)
+|..++......+. .+++|++|++++| .++......+. .+++|++|++++|++...... .....+.
T Consensus 478 ~N~~~~~~~~~~~~-------~l~~L~~L~Ls~N-~L~~l~~~~f~--~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~ 543 (635)
T 4g8a_A 478 GNSFQENFLPDIFT-------ELRNLTFLDLSQC-QLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTF----PYKCLNS 543 (635)
T ss_dssp TCEEGGGEECSCCT-------TCTTCCEEECTTS-CCCEECTTTTT--TCTTCCEEECTTSCCCBCCCG----GGTTCTT
T ss_pred hcccccccCchhhh-------hccccCEEECCCC-ccCCcChHHHc--CCCCCCEEECCCCcCCCCChh----HHhCCCC
Confidence 98622211111111 6899999999999 57765444443 689999999999998765222 2334566
Q ss_pred eE-Eeecccccccc
Q 007372 583 LT-FCLDGCEIGCH 595 (606)
Q Consensus 583 l~-~~~~g~~~~~~ 595 (606)
|+ +++.+|.+...
T Consensus 544 L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 544 LQVLDYSLNHIMTS 557 (635)
T ss_dssp CCEEECTTSCCCBC
T ss_pred CCEEECCCCcCCCC
Confidence 76 99999988766
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=3.8e-19 Score=178.57 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=65.9
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
++|+.|++++| .+++. ..+..+++|++|++++|.+++.....+ ..+++|++|++++|. ++.... . ...+
T Consensus 226 ~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~--~----~~~l 294 (390)
T 3o6n_A 226 VELTILKLQHN-NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNR-LVALNL--Y----GQPI 294 (390)
T ss_dssp SSCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSC-CCEEEC--S----SSCC
T ss_pred ccccEEECCCC-CCccc--HHHcCCCCccEEECCCCcCCCcChhHc-cccccCCEEECCCCc-CcccCc--c----cCCC
Confidence 45555555555 34332 334455555555555555543321111 234556666666554 332110 0 1245
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
++|++|++++| .++.... .+ ..+++|++|++++|. ++... +. .+++|++|++++|+ ++......+
T Consensus 295 ~~L~~L~L~~n-~l~~~~~-~~-~~l~~L~~L~L~~N~-i~~~~---~~-------~~~~L~~L~l~~N~-~~~~~~~~~ 359 (390)
T 3o6n_A 295 PTLKVLDLSHN-HLLHVER-NQ-PQFDRLENLYLDHNS-IVTLK---LS-------THHTLKNLTLSHND-WDCNSLRAL 359 (390)
T ss_dssp TTCCEEECCSS-CCCCCGG-GH-HHHTTCSEEECCSSC-CCCCC---CC-------TTCCCSEEECCSSC-EEHHHHHHH
T ss_pred CCCCEEECCCC-cceecCc-cc-cccCcCCEEECCCCc-cceeC---ch-------hhccCCEEEcCCCC-ccchhHHHH
Confidence 66666666666 4432211 11 234667777777665 44321 11 46677777777774 555444443
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=2.1e-21 Score=197.72 Aligned_cols=375 Identities=14% Similarity=0.064 Sum_probs=171.8
Q ss_pred CcccCceecccCCCChhhhhhhhcCCcceEeccCCCCCcHH---------H--HHHHh-hcCCCcceeeeccccccCCcc
Q 007372 66 CKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQ---------I--LASIG-HNCPNLRVLMLELADKESPHL 133 (606)
Q Consensus 66 ~~~L~~L~l~~~~l~~~~l~~~~~~~L~~L~l~~~~~~~~~---------~--l~~l~-~~~~~L~~L~l~~~~~~~~~i 133 (606)
.+.|++|+++++.+...+-..-..++|++|++++|. +... . ...+. ...+++++|+++.+...+ +
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~--l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS--L 86 (454)
T ss_dssp ------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC--C
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc--C
Confidence 467888888888775444333334788888887652 1100 0 00000 011235666665542211 1
Q ss_pred chHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccccccCcccccc
Q 007372 134 FENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTS 213 (606)
Q Consensus 134 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (606)
. ...++|+.|+++++. +.. +. ...++|+.|+++++....+...
T Consensus 87 p--------~~~~~L~~L~l~~n~----l~~--lp----~~~~~L~~L~l~~n~l~~l~~~------------------- 129 (454)
T 1jl5_A 87 P--------ELPPHLESLVASCNS----LTE--LP----ELPQSLKSLLVDNNNLKALSDL------------------- 129 (454)
T ss_dssp C--------SCCTTCSEEECCSSC----CSS--CC----CCCTTCCEEECCSSCCSCCCSC-------------------
T ss_pred C--------CCcCCCCEEEccCCc----CCc--cc----cccCCCcEEECCCCccCcccCC-------------------
Confidence 1 112567777776532 111 11 1125677777766543322211
Q ss_pred cccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCC
Q 007372 214 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 293 (606)
Q Consensus 214 ~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 293 (606)
.++|++|+++.+.+.. ++. +..+++|++|++++|.... ++. ..++|++|+++++....
T Consensus 130 ----~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~------lp~-------~~~~L~~L~L~~n~l~~-- 187 (454)
T 1jl5_A 130 ----PPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKK------LPD-------LPPSLEFIAAGNNQLEE-- 187 (454)
T ss_dssp ----CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSC------CCC-------CCTTCCEEECCSSCCSS--
T ss_pred ----CCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCcc------cCC-------CcccccEEECcCCcCCc--
Confidence 3567777777666554 222 3456777777777764311 110 12367777777654211
Q ss_pred CccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 007372 294 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 373 (606)
Q Consensus 294 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 373 (606)
+. . ...+++|+.|+++++ .++. +. ...++|+.|+++++.. .. +.. ...+++|++|++++|
T Consensus 188 ----l~-----~-~~~l~~L~~L~l~~N-~l~~--l~---~~~~~L~~L~l~~n~l-~~--lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 188 ----LP-----E-LQNLPFLTAIYADNN-SLKK--LP---DLPLSLESIVAGNNIL-EE--LPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp ----CC-----C-CTTCTTCCEEECCSS-CCSS--CC---CCCTTCCEEECCSSCC-SS--CCC-CTTCTTCCEEECCSS
T ss_pred ----Cc-----c-ccCCCCCCEEECCCC-cCCc--CC---CCcCcccEEECcCCcC-Cc--ccc-cCCCCCCCEEECCCC
Confidence 11 0 135667777777776 3332 11 1234677777777642 11 111 235677777777776
Q ss_pred CCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCC
Q 007372 374 RLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 452 (606)
Q Consensus 374 ~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 452 (606)
. +.. +. ..++|+.|++++| .++. +. ...++|+.|++++|.+++.. ...++|+.|++++|. ++
T Consensus 248 ~-l~~-----l~~~~~~L~~L~l~~N-~l~~--l~--~~~~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~-l~ 310 (454)
T 1jl5_A 248 L-LKT-----LPDLPPSLEALNVRDN-YLTD--LP--ELPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNE-IR 310 (454)
T ss_dssp C-CSS-----CCSCCTTCCEEECCSS-CCSC--CC--CCCTTCCEEECCSSCCSEES-----CCCTTCCEEECCSSC-CS
T ss_pred c-CCc-----ccccccccCEEECCCC-cccc--cC--cccCcCCEEECcCCccCccc-----CcCCcCCEEECcCCc-CC
Confidence 5 332 11 2467777777776 4443 11 12367777777777666411 123577888887775 33
Q ss_pred HHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEe
Q 007372 453 DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLD 532 (606)
Q Consensus 453 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~ 532 (606)
. +. ...++|++|++++| .++. +...+++|++|++++|. ++. ++. .+++|++|+
T Consensus 311 ~-----i~----~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~~N~-l~~-----lp~------~l~~L~~L~ 363 (454)
T 1jl5_A 311 S-----LC----DLPPSLEELNVSNN-KLIE-----LPALPPRLERLIASFNH-LAE-----VPE------LPQNLKQLH 363 (454)
T ss_dssp E-----EC----CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CSC-----CCC------CCTTCCEEE
T ss_pred c-----cc----CCcCcCCEEECCCC-cccc-----ccccCCcCCEEECCCCc-ccc-----ccc------hhhhccEEE
Confidence 2 12 12357888888887 5543 12235788888888886 542 122 256888888
Q ss_pred ccCCCCCCH--HHHHHhhc-----------CCCCCceEEEeeceeccC
Q 007372 533 LCNCIGLSV--DSLRWVKR-----------PSFRGLHWLGIGQTRLAS 567 (606)
Q Consensus 533 l~~c~~l~~--~~~~~l~~-----------~~~~~L~~L~l~~~~~~~ 567 (606)
+++|. ++. .....+.. ..+++|+.|++++|++..
T Consensus 364 L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 364 VEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCSSC-CSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 88884 443 10111100 012678888888888665
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=6.4e-19 Score=179.49 Aligned_cols=225 Identities=15% Similarity=0.081 Sum_probs=137.1
Q ss_pred HhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCcc
Q 007372 143 TSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLR 222 (606)
Q Consensus 143 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 222 (606)
..+++|+.|+++.+. +... ..+ ..+++|+.|+++++....+. +..+++|+
T Consensus 39 ~~l~~L~~L~Ls~n~----l~~~--~~l--~~l~~L~~L~Ls~n~l~~~~----------------------~~~l~~L~ 88 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS----ITDM--TGI--EKLTGLTKLICTSNNITTLD----------------------LSQNTNLT 88 (457)
T ss_dssp HHHTTCCEEECCSSC----CCCC--TTG--GGCTTCSEEECCSSCCSCCC----------------------CTTCTTCS
T ss_pred hHcCCCCEEEccCCC----cccC--hhh--cccCCCCEEEccCCcCCeEc----------------------cccCCCCC
Confidence 356788888888643 2111 111 23478888888877543321 23478888
Q ss_pred EEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHH
Q 007372 223 SLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMG 302 (606)
Q Consensus 223 ~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 302 (606)
+|+++.+.+... + ...+++|++|++++|.. +. + .+..+++|++|+++++.. +...
T Consensus 89 ~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l---------~~--l-~~~~l~~L~~L~l~~N~l---------~~l~ 143 (457)
T 3bz5_A 89 YLACDSNKLTNL--D--VTPLTKLTYLNCDTNKL---------TK--L-DVSQNPLLTYLNCARNTL---------TEID 143 (457)
T ss_dssp EEECCSSCCSCC--C--CTTCTTCCEEECCSSCC---------SC--C-CCTTCTTCCEEECTTSCC---------SCCC
T ss_pred EEECcCCCCcee--e--cCCCCcCCEEECCCCcC---------Ce--e-cCCCCCcCCEEECCCCcc---------ceec
Confidence 888887776653 1 34578888888887643 11 1 156777888888887642 2211
Q ss_pred HHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHH
Q 007372 303 MFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVK 382 (606)
Q Consensus 303 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 382 (606)
...+++|+.|+++++..++... +..+++|+.|+++++.. +... ...+++|+.|++++|. ++..
T Consensus 144 ----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l-~~l~----l~~l~~L~~L~l~~N~-l~~~--- 206 (457)
T 3bz5_A 144 ----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNKI-TELD----VSQNKLLNRLNCDTNN-ITKL--- 206 (457)
T ss_dssp ----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSCC-CCCC----CTTCTTCCEEECCSSC-CSCC---
T ss_pred ----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCcc-ceec----cccCCCCCEEECcCCc-CCee---
Confidence 2356778888888774444322 23567788888877642 2211 3456778888887776 4432
Q ss_pred HhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccC
Q 007372 383 KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRG 447 (606)
Q Consensus 383 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 447 (606)
.+..+++|+.|++++| .++.. . +..+++|+.|++++|.++... ...+++|+.|+++.
T Consensus 207 ~l~~l~~L~~L~Ls~N-~l~~i--p-~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSN-KLTEI--D-VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CCTTCTTCSEEECCSS-CCSCC--C-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTT
T ss_pred ccccCCCCCEEECcCC-ccccc--C-ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccC
Confidence 3556778888888777 55552 2 567777888888887766532 12355555554443
No 48
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=3.4e-18 Score=169.43 Aligned_cols=173 Identities=21% Similarity=0.196 Sum_probs=79.5
Q ss_pred CCCcEEEccCCCCCChHHHHcc----cC-CCCCCEEEccCCCCChHHHHHHHh---cCC-CccEEEccCCCCCCHHHHHH
Q 007372 388 RNLEVLDLGGCKSIADTCLRSI----SC-LRKLTALNLTGADITDSGLSILAQ---GNL-PIMNLCLRGCKRVTDKGISH 458 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~i~~~~~~~l~~---~~~-~L~~L~l~~~~~~~~~~~~~ 458 (606)
++|++|++++| .+++.+...+ .. .++|++|++++|.+++.+...+.. ..+ +|++|++++|. +++.+...
T Consensus 109 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~ 186 (362)
T 3goz_A 109 FTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAE 186 (362)
T ss_dssp TTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHH
Confidence 45555555555 3444333222 12 235555555555555433332221 222 56666666554 43333322
Q ss_pred HHhhcCCCC-CCCCEEecCCCCCCCHHHHHHHHH----cCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEec
Q 007372 459 LLCVGGTIS-QSLTTLDLGYMPGISDDGILTIAA----AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL 533 (606)
Q Consensus 459 l~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l 533 (606)
+.... ..+ ++|++|++++| .+++.+...+.. ..++|++|++++|. +++.+.+.+..... .+++|++|++
T Consensus 187 l~~~l-~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~---~l~~L~~L~L 260 (362)
T 3goz_A 187 LAKFL-ASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKD---SLKHLQTVYL 260 (362)
T ss_dssp HHHHH-HTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTT---TTTTCSEEEE
T ss_pred HHHHH-HhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHh---cCCCccEEEe
Confidence 22100 122 35666666665 454433332222 12456666666664 55544444433222 4556666666
Q ss_pred cCCC--CCCHHHHHHhhc--CCCCCceEEEeeceeccCC
Q 007372 534 CNCI--GLSVDSLRWVKR--PSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 534 ~~c~--~l~~~~~~~l~~--~~~~~L~~L~l~~~~~~~~ 568 (606)
++|. .++..+...+.. ..+++|+.|++++|++.+.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 6662 244444443321 2445566666666665443
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=5.8e-20 Score=194.72 Aligned_cols=334 Identities=13% Similarity=0.035 Sum_probs=222.2
Q ss_pred ccceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCC
Q 007372 175 PSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDR 254 (606)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 254 (606)
..+++.++++++....++.. .+..+++|++|+++++.+.... +..+..+++|++|++++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~-------------------~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n 109 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA-------------------LLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFN 109 (597)
T ss_dssp GCCCSEEEESSCEESEECTH-------------------HHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred CCCceEEEeeCCCCCCcCHH-------------------HHccCCCCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCC
Confidence 47888888888755444322 1233899999999988877622 223356899999999987
Q ss_pred CCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHH
Q 007372 255 PNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL 334 (606)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 334 (606)
.. +......+..+++|++|+++++.. ..+.. .+...+++|++|+++++ .++.... ..+.
T Consensus 110 ~l---------~~~~~~~~~~l~~L~~L~L~~n~l------~~l~~----~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~ 168 (597)
T 3oja_B 110 AI---------RYLPPHVFQNVPLLTVLVLERNDL------SSLPR----GIFHNTPKLTTLSMSNN-NLERIED-DTFQ 168 (597)
T ss_dssp CC---------CCCCTTTTTTCTTCCEEECCSSCC------CCCCT----TTTTTCTTCCEEECCSS-CCCBCCT-TTTT
T ss_pred cC---------CCCCHHHHcCCCCCCEEEeeCCCC------CCCCH----HHhccCCCCCEEEeeCC-cCCCCCh-hhhh
Confidence 43 222223467889999999998752 11211 11236789999999988 4443211 1234
Q ss_pred cCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCC
Q 007372 335 SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRK 414 (606)
Q Consensus 335 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 414 (606)
.+++|+.|+++++.. .... ...+++|+.|+++++. ++ .+...++|+.|++++| .++.... ...++
T Consensus 169 ~l~~L~~L~L~~N~l-~~~~----~~~l~~L~~L~l~~n~-l~-----~l~~~~~L~~L~ls~n-~l~~~~~---~~~~~ 233 (597)
T 3oja_B 169 ATTSLQNLQLSSNRL-THVD----LSLIPSLFHANVSYNL-LS-----TLAIPIAVEELDASHN-SINVVRG---PVNVE 233 (597)
T ss_dssp TCTTCCEEECTTSCC-SBCC----GGGCTTCSEEECCSSC-CS-----EEECCTTCSEEECCSS-CCCEEEC---SCCSC
T ss_pred cCCcCcEEECcCCCC-CCcC----hhhhhhhhhhhcccCc-cc-----cccCCchhheeeccCC-ccccccc---ccCCC
Confidence 678999999998753 2211 3457899999999876 33 2456688999999998 5553221 23468
Q ss_pred CCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCC
Q 007372 415 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 494 (606)
Q Consensus 415 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (606)
|+.|++++|.+++. .....+++|+.|++++|. ++......+. .+++|+.|++++| .++.. ......++
T Consensus 234 L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~-----~l~~L~~L~Ls~N-~l~~l--~~~~~~l~ 301 (597)
T 3oja_B 234 LTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPFV-----KMQRLERLYISNN-RLVAL--NLYGQPIP 301 (597)
T ss_dssp CCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEEESGGGT-----TCSSCCEEECTTS-CCCEE--ECSSSCCT
T ss_pred CCEEECCCCCCCCC---hhhccCCCCCEEECCCCc-cCCCCHHHhc-----CccCCCEEECCCC-CCCCC--CcccccCC
Confidence 99999999988864 233468999999999987 6554334444 6899999999998 66542 11123579
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHH
Q 007372 495 GIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVIT 574 (606)
Q Consensus 495 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~ 574 (606)
+|+.|++++|. ++... ..+. .+++|+.|++++|. ++..+ ...+++|+.|++++|++... ...
T Consensus 302 ~L~~L~Ls~N~-l~~i~-~~~~-------~l~~L~~L~L~~N~-l~~~~-----~~~~~~L~~L~l~~N~~~~~---~~~ 363 (597)
T 3oja_B 302 TLKVLDLSHNH-LLHVE-RNQP-------QFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHNDWDCN---SLR 363 (597)
T ss_dssp TCCEEECCSSC-CCCCG-GGHH-------HHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSCEEHH---HHH
T ss_pred CCcEEECCCCC-CCccC-cccc-------cCCCCCEEECCCCC-CCCcC-----hhhcCCCCEEEeeCCCCCCh---hHH
Confidence 99999999997 65321 2233 47899999999995 65432 35688999999999997644 333
Q ss_pred HHhhcCCceEEeeccccccccc
Q 007372 575 EIHNERPWLTFCLDGCEIGCHD 596 (606)
Q Consensus 575 ~~~~~~~~l~~~~~g~~~~~~~ 596 (606)
.+....+. ....++...|..
T Consensus 364 ~~~~~~~~--~~~~~~~~~C~~ 383 (597)
T 3oja_B 364 ALFRNVAR--PAVDDADQHCKI 383 (597)
T ss_dssp HHTTTCCT--TTBCCCCCCCCT
T ss_pred HHHHHHhh--hccccccccCCc
Confidence 34332222 233455555543
No 50
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=2.1e-18 Score=170.87 Aligned_cols=253 Identities=17% Similarity=0.183 Sum_probs=167.3
Q ss_pred CCCCcEEEEcCCCC--CCHHHHHHHHcCCC-CccEEEccCCCCCCHHHHHHhcC-----CCCCcEEEccCCCCCChHHHH
Q 007372 336 CHSLKKFEVRSASF--LSDLAFHDLTGVPC-ALVEVRLLWCRLITSETVKKLAS-----SRNLEVLDLGGCKSIADTCLR 407 (606)
Q Consensus 336 ~~~L~~L~l~~~~~--~~~~~~~~l~~~~~-~L~~L~l~~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~ 407 (606)
.++|++|+++++.. .....+......++ +|++|++++|. +++.+...+.. +++|++|++++| .+++....
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHH
Confidence 33455555555431 11122223333445 67777777765 55544444443 389999999998 67765544
Q ss_pred c----ccCC-CCCCEEEccCCCCChHHHHHHHh---c-CCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCC
Q 007372 408 S----ISCL-RKLTALNLTGADITDSGLSILAQ---G-NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 478 (606)
Q Consensus 408 ~----l~~~-~~L~~L~l~~~~i~~~~~~~l~~---~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 478 (606)
. +..+ ++|++|++++|.+++.+...+.. . +++|++|++++|. +++.+...+..+.....++|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 3 3455 89999999999888776655544 2 4699999999997 7765555543221123359999999999
Q ss_pred CCCCHHHHHHHH---HcC-CCCcEEEecCCCCCCHHHHHHHHhhCCCccc-CCCCCEEeccCCCCCCHHHHHHhh--cCC
Q 007372 479 PGISDDGILTIA---AAG-IGIIDLCVRSCFYVTDASVEALARKQPDQEK-SKQLRRLDLCNCIGLSVDSLRWVK--RPS 551 (606)
Q Consensus 479 ~~l~~~~~~~l~---~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~l~--~~~ 551 (606)
.+++.+...++ ..+ ++|++|++++|. +++.+...++..+. . .++|++|++++| .+++.+...+. ...
T Consensus 178 -~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~---~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 178 -NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFS---SIPNHVVSLNLCLN-CLHGPSLENLKLLKDS 251 (362)
T ss_dssp -CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHH---HSCTTCCEEECCSS-CCCCCCHHHHHHTTTT
T ss_pred -CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHh---cCCCCceEEECcCC-CCCcHHHHHHHHHHhc
Confidence 77765554443 345 599999999998 88755554444222 2 459999999999 57775443322 146
Q ss_pred CCCceEEEeeceeccCCChhHHHHHhh---cCCceE-Eeecccccccccc
Q 007372 552 FRGLHWLGIGQTRLASKGNPVITEIHN---ERPWLT-FCLDGCEIGCHDG 597 (606)
Q Consensus 552 ~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~~l~-~~~~g~~~~~~~~ 597 (606)
+++|+.|++++|.+.....+.+..+.. ..+.++ +++.||++.....
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 889999999999976665555555544 344566 9999999887633
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=1.5e-18 Score=176.79 Aligned_cols=327 Identities=13% Similarity=0.064 Sum_probs=185.8
Q ss_pred cCCCCceeeecCCCCChhHHHHHHhhCcccCceecccCCCChhhhhhhhcCCcceEeccCCCCCcHHHHHHHhhcCCCcc
Q 007372 40 ALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLR 119 (606)
Q Consensus 40 ~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 119 (606)
.++++++|+++++.+... +. ...+++|++|+++++.++..+ .-..++|++|++++|. ++... ...+++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM--TG-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD----VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCCC--TT-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC----CTTCTTCC
T ss_pred HcCCCCEEEccCCCcccC--hh-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee----cCCCCcCC
Confidence 357888899988876652 33 345888899998888887753 2224888888888874 33211 25788888
Q ss_pred eeeeccccccCCccchHHHHHHHHhCCCCceeeeeeccCcccccccchhhhhhhcccceeEEeecCCcccchHHHHHHhh
Q 007372 120 VLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIG 199 (606)
Q Consensus 120 ~L~l~~~~~~~~~i~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 199 (606)
+|+++.+...... +..+++|+.|+++.+. +....+ ..+++|+.|+++++.....
T Consensus 110 ~L~L~~N~l~~l~---------~~~l~~L~~L~l~~N~----l~~l~l-----~~l~~L~~L~l~~n~~~~~-------- 163 (457)
T 3bz5_A 110 YLNCDTNKLTKLD---------VSQNPLLTYLNCARNT----LTEIDV-----SHNTQLTELDCHLNKKITK-------- 163 (457)
T ss_dssp EEECCSSCCSCCC---------CTTCTTCCEEECTTSC----CSCCCC-----TTCTTCCEEECTTCSCCCC--------
T ss_pred EEECCCCcCCeec---------CCCCCcCCEEECCCCc----cceecc-----ccCCcCCEEECCCCCcccc--------
Confidence 8888766432211 3467788888887643 222222 2347788888776621100
Q ss_pred cccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCc
Q 007372 200 RNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHL 279 (606)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L 279 (606)
..+..+++|++|+++.+.++.. + ...+++|+.|++++|.. +.. .+..+++|
T Consensus 164 -------------~~~~~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~L~l~~N~l---------~~~---~l~~l~~L 214 (457)
T 3bz5_A 164 -------------LDVTPQTQLTTLDCSFNKITEL--D--VSQNKLLNRLNCDTNNI---------TKL---DLNQNIQL 214 (457)
T ss_dssp -------------CCCTTCTTCCEEECCSSCCCCC--C--CTTCTTCCEEECCSSCC---------SCC---CCTTCTTC
T ss_pred -------------cccccCCcCCEEECCCCcccee--c--cccCCCCCEEECcCCcC---------Cee---ccccCCCC
Confidence 0123467778888777666652 2 34567777787777633 111 25566777
Q ss_pred cEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHH
Q 007372 280 TGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLT 359 (606)
Q Consensus 280 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 359 (606)
++|+++++. +++.. ...+++|+.|+++++ .++... ...+++|+.|++++
T Consensus 215 ~~L~Ls~N~---------l~~ip----~~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~L~l~~------------- 263 (457)
T 3bz5_A 215 TFLDCSSNK---------LTEID----VTPLTQLTYFDCSVN-PLTELD----VSTLSKLTTLHCIQ------------- 263 (457)
T ss_dssp SEEECCSSC---------CSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECTT-------------
T ss_pred CEEECcCCc---------ccccC----ccccCCCCEEEeeCC-cCCCcC----HHHCCCCCEEeccC-------------
Confidence 777777654 22211 225567777777766 343321 22456666666544
Q ss_pred cCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCC
Q 007372 360 GVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLP 439 (606)
Q Consensus 360 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 439 (606)
.+|+.|++++|...... ....+++|+.|++++|..++... ...++|+.|+++++ ++
T Consensus 264 ---n~L~~L~l~~n~~~~~~---~~~~l~~L~~L~Ls~n~~l~~l~----~~~~~L~~L~l~~~--------------~~ 319 (457)
T 3bz5_A 264 ---TDLLEIDLTHNTQLIYF---QAEGCRKIKELDVTHNTQLYLLD----CQAAGITELDLSQN--------------PK 319 (457)
T ss_dssp ---CCCSCCCCTTCTTCCEE---ECTTCTTCCCCCCTTCTTCCEEE----CTTCCCSCCCCTTC--------------TT
T ss_pred ---CCCCEEECCCCccCCcc---cccccccCCEEECCCCcccceec----cCCCcceEechhhc--------------cc
Confidence 35566666665532221 12356677777776664332211 13344555554432 56
Q ss_pred ccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCC
Q 007372 440 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 505 (606)
Q Consensus 440 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 505 (606)
|++|++++|. ++.. .+. .+++|+.|++++| .+++ ++.|..|.+++|.
T Consensus 320 L~~L~L~~N~-l~~l---~l~-----~l~~L~~L~l~~N-~l~~---------l~~L~~L~l~~n~ 366 (457)
T 3bz5_A 320 LVYLYLNNTE-LTEL---DVS-----HNTKLKSLSCVNA-HIQD---------FSSVGKIPALNNN 366 (457)
T ss_dssp CCEEECTTCC-CSCC---CCT-----TCTTCSEEECCSS-CCCB---------CTTGGGSSGGGTS
T ss_pred CCEEECCCCc-cccc---ccc-----cCCcCcEEECCCC-CCCC---------ccccccccccCCc
Confidence 6666666665 4332 122 4566666666665 4442 2455555555443
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=3.5e-18 Score=181.03 Aligned_cols=246 Identities=15% Similarity=0.065 Sum_probs=132.4
Q ss_pred cCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCc
Q 007372 216 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 295 (606)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 295 (606)
.++++|++|+++++.+.. ....++..+++|++|++++|.. +......+..+++|++|+++++.
T Consensus 120 ~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~~L~~L~L~~N~------- 182 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL---------ERIEDDTFQATTSLQNLQLSSNR------- 182 (597)
T ss_dssp TTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC---------CBCCTTTTTTCTTCCEEECTTSC-------
T ss_pred cCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcC---------CCCChhhhhcCCcCcEEECcCCC-------
Confidence 345666666666655543 2222234466666666666532 11112234556666677666653
Q ss_pred cccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 007372 296 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 375 (606)
Q Consensus 296 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 375 (606)
++... ...+++|+.|+++++ .++.. ...++|+.|+++++..-... ....++|+.|++++|.
T Consensus 183 --l~~~~----~~~l~~L~~L~l~~n-~l~~l------~~~~~L~~L~ls~n~l~~~~-----~~~~~~L~~L~L~~n~- 243 (597)
T 3oja_B 183 --LTHVD----LSLIPSLFHANVSYN-LLSTL------AIPIAVEELDASHNSINVVR-----GPVNVELTILKLQHNN- 243 (597)
T ss_dssp --CSBCC----GGGCTTCSEEECCSS-CCSEE------ECCTTCSEEECCSSCCCEEE-----CSCCSCCCEEECCSSC-
T ss_pred --CCCcC----hhhhhhhhhhhcccC-ccccc------cCCchhheeeccCCcccccc-----cccCCCCCEEECCCCC-
Confidence 11111 124566666666665 33321 13356666666665321000 0123567777777765
Q ss_pred CCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHH
Q 007372 376 ITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKG 455 (606)
Q Consensus 376 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 455 (606)
+++ ...+..+++|+.|++++| .++......+..+++|+.|++++|.++.. ......+++|+.|++++|. ++...
T Consensus 244 l~~--~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~ 317 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVE 317 (597)
T ss_dssp CCC--CGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCG
T ss_pred CCC--ChhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCC-CCccC
Confidence 443 234556777777777776 56655455666777777777777766552 1112246677777777775 33211
Q ss_pred HHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHH
Q 007372 456 ISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL 515 (606)
Q Consensus 456 ~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 515 (606)
..+. .+++|+.|++++| .++... ...+++|+.|++++|+ ++......+
T Consensus 318 -~~~~-----~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~-~~~~~~~~~ 365 (597)
T 3oja_B 318 -RNQP-----QFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND-WDCNSLRAL 365 (597)
T ss_dssp -GGHH-----HHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC-EEHHHHHHH
T ss_pred -cccc-----cCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC-CCChhHHHH
Confidence 1112 3567777777776 444322 1345677777777776 555444443
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=6.5e-18 Score=165.39 Aligned_cols=202 Identities=15% Similarity=0.085 Sum_probs=123.7
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChH--HHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADT--CLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
++|++|+++++. +.......+.++++|+.|++++| .++.. ....+..+++|++|++++|.++.... ...++|
T Consensus 121 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~----~~~~~L 194 (330)
T 1xku_A 121 KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSL 194 (330)
T ss_dssp TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS----SCCTTC
T ss_pred ccccEEECCCCc-ccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCCc----cccccC
Confidence 567777777765 55555556677888888888887 55432 23455678888888888887664211 123688
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCC
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 520 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 520 (606)
++|++++|. ++......+. .+++|+.|++++| .++......+ ..+++|++|++++|. ++. ++..+.
T Consensus 195 ~~L~l~~n~-l~~~~~~~~~-----~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~-----lp~~l~ 260 (330)
T 1xku_A 195 TELHLDGNK-ITKVDAASLK-----GLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNNK-LVK-----VPGGLA 260 (330)
T ss_dssp SEEECTTSC-CCEECTGGGT-----TCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSSC-CSS-----CCTTTT
T ss_pred CEEECCCCc-CCccCHHHhc-----CCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCCc-Ccc-----CChhhc
Confidence 888888886 5544333333 6788888888887 5654333233 456888888888886 552 111111
Q ss_pred CcccCCCCCEEeccCCCCCCHHHHHHhhc----CCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeeccc
Q 007372 521 DQEKSKQLRRLDLCNCIGLSVDSLRWVKR----PSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGC 590 (606)
Q Consensus 521 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~ 590 (606)
.+++|++|++++| .++..+...+.. ...+.|+.|++++|++... ..........+.++ ++++||
T Consensus 261 ---~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~--~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 ---DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ---TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG--GSCGGGGTTCCCGGGEEC---
T ss_pred ---cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccc--ccCccccccccceeEEEeccc
Confidence 5788889999888 466544433321 1246788889988886532 11112223334444 666554
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.2e-17 Score=165.00 Aligned_cols=169 Identities=15% Similarity=0.067 Sum_probs=90.9
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+++|++|++++|..+.......+.++++|++|++++| .++......+..+++|++|++++|.++..... +...+++|+
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~ 225 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEI-FVDVTSSVE 225 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHH-HHHHTTTEE
T ss_pred CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhh-hhhhccccc
Confidence 3444555554443233222233445566666666665 44443334445555666666666555433221 222345555
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCC
Q 007372 442 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPD 521 (606)
Q Consensus 442 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 521 (606)
.|++++|. ++..... .+.. ...++.++.+++.++. +++..+..++..+.
T Consensus 226 ~L~L~~n~-l~~~~~~---------------------------~l~~-~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~- 274 (353)
T 2z80_A 226 CLELRDTD-LDTFHFS---------------------------ELST-GETNSLIKKFTFRNVK-ITDESLFQVMKLLN- 274 (353)
T ss_dssp EEEEESCB-CTTCCCC----------------------------------CCCCCCEEEEESCB-CCHHHHHHHHHHHH-
T ss_pred EEECCCCc-ccccccc---------------------------cccc-ccccchhhcccccccc-ccCcchhhhHHHHh-
Confidence 55555554 2211100 0111 1245677788887776 77766555543322
Q ss_pred cccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 522 QEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 522 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.+++|++|++++| .++..+...+ ..+++|+.|++++|++..+
T Consensus 275 --~l~~L~~L~Ls~N-~l~~i~~~~~--~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 275 --QISGLLELEFSRN-QLKSVPDGIF--DRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp --TCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred --cccCCCEEECCCC-CCCccCHHHH--hcCCCCCEEEeeCCCccCc
Confidence 5788999999888 4664332222 3578999999999998766
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.66 E-value=1.7e-17 Score=162.40 Aligned_cols=278 Identities=14% Similarity=0.047 Sum_probs=129.8
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
.++|++|+++++.+.... ...+..+++|++|++++|.. +......+..+++|++|+++++.. ..
T Consensus 51 ~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~~L~~L~Ls~n~l------~~ 114 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKI---------SKISPGAFAPLVKLERLYLSKNQL------KE 114 (330)
T ss_dssp CTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC---------CCBCTTTTTTCTTCCEEECCSSCC------SB
T ss_pred CCCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcC---------CeeCHHHhcCCCCCCEEECCCCcC------Cc
Confidence 467888888887776522 21235578888888888643 222223466778888888887642 11
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
+.. ...++|++|+++++ .++... ...+..+++|+.|+++++..............+++|+.|+++++. ++
T Consensus 115 l~~-------~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~ 184 (330)
T 1xku_A 115 LPE-------KMPKTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-IT 184 (330)
T ss_dssp CCS-------SCCTTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CC
T ss_pred cCh-------hhcccccEEECCCC-cccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cc
Confidence 111 12257777777776 333211 112335666666666665421111111112234445555554443 22
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHH
Q 007372 378 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 457 (606)
Q Consensus 378 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 457 (606)
.... .-.++|++|++++| .+++.....+..+ ++|++|++++|. ++.....
T Consensus 185 ~l~~---~~~~~L~~L~l~~n-~l~~~~~~~~~~l-------------------------~~L~~L~Ls~n~-l~~~~~~ 234 (330)
T 1xku_A 185 TIPQ---GLPPSLTELHLDGN-KITKVDAASLKGL-------------------------NNLAKLGLSFNS-ISAVDNG 234 (330)
T ss_dssp SCCS---SCCTTCSEEECTTS-CCCEECTGGGTTC-------------------------TTCCEEECCSSC-CCEECTT
T ss_pred cCCc---cccccCCEEECCCC-cCCccCHHHhcCC-------------------------CCCCEEECCCCc-CceeChh
Confidence 1000 01134444444444 3333323333344 455555555543 3322211
Q ss_pred HHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCC
Q 007372 458 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 458 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 537 (606)
.+. .+++|++|++++| .++... ..+ ..+++|++|++++|. ++......+..... ....++|+.|++++|+
T Consensus 235 ~~~-----~l~~L~~L~L~~N-~l~~lp-~~l-~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~-~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 235 SLA-----NTPHLRELHLNNN-KLVKVP-GGL-ADHKYIQVVYLHNNN-ISAIGSNDFCPPGY-NTKKASYSGVSLFSNP 304 (330)
T ss_dssp TGG-----GSTTCCEEECCSS-CCSSCC-TTT-TTCSSCCEEECCSSC-CCCCCTTSSSCSSC-CTTSCCCSEEECCSSS
T ss_pred hcc-----CCCCCCEEECCCC-cCccCC-hhh-ccCCCcCEEECCCCc-CCccChhhcCCccc-ccccccccceEeecCc
Confidence 222 3455555555555 333110 111 244666666666665 44322222211000 0023567777777775
Q ss_pred CCCHHHH--HHhhcCCCCCceEEEeecee
Q 007372 538 GLSVDSL--RWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 538 ~l~~~~~--~~l~~~~~~~L~~L~l~~~~ 564 (606)
+....+ ..+ ..+++|+.+++++|+
T Consensus 305 -~~~~~i~~~~f--~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 305 -VQYWEIQPSTF--RCVYVRAAVQLGNYK 330 (330)
T ss_dssp -SCGGGSCGGGG--TTCCCGGGEEC----
T ss_pred -ccccccCcccc--ccccceeEEEecccC
Confidence 432111 122 246677888877764
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=5e-17 Score=160.62 Aligned_cols=214 Identities=18% Similarity=0.093 Sum_probs=141.8
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
.++|++|+++++.+.... ...+..+++|++|++++|.. +......+..+++|++|+++++.. ..
T Consensus 51 ~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~~L~~L~Ls~n~l------~~ 114 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGI---------NTIEEDSFSSLGSLEHLDLSYNYL------SN 114 (353)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCC---------CEECTTTTTTCTTCCEEECCSSCC------SS
T ss_pred cccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCcc---------CccCHhhcCCCCCCCEEECCCCcC------Cc
Confidence 568999999998887622 22335689999999999743 222223467889999999998752 22
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
+.. .....+++|++|+++++ .++.......+..+++|+.|+++++..+.... ......+++|++|++++|. +.
T Consensus 115 ~~~----~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~ 187 (353)
T 2z80_A 115 LSS----SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD-LQ 187 (353)
T ss_dssp CCH----HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CC
T ss_pred CCH----hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCC-cC
Confidence 222 12347899999999988 44421110123468999999999875333221 1223457899999999987 66
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHH--HhcCCCccEEEccCCCCCCHHH
Q 007372 378 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSIL--AQGNLPIMNLCLRGCKRVTDKG 455 (606)
Q Consensus 378 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~ 455 (606)
......+..+++|++|++++| .++......+..+++|+.|++++|.+++.....+ ....+.++.+++.++. +++..
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~ 265 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDES 265 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHH
T ss_pred ccCHHHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcc
Confidence 555556778999999999998 6666554555678999999999997765322111 1124455555555553 44443
Q ss_pred H
Q 007372 456 I 456 (606)
Q Consensus 456 ~ 456 (606)
+
T Consensus 266 l 266 (353)
T 2z80_A 266 L 266 (353)
T ss_dssp H
T ss_pred h
Confidence 3
No 57
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=149.49 Aligned_cols=207 Identities=20% Similarity=0.213 Sum_probs=146.4
Q ss_pred CCCccEEEccCCCCCCHHHHHHhc-----CCCCCcEEEccCCCCCChHHHHccc-CCCCCCEEEccCCCCChHHHHHHHh
Q 007372 362 PCALVEVRLLWCRLITSETVKKLA-----SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQ 435 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~ 435 (606)
.+.|+.|++++|. ++......+. ..++|++|+|++| .+++.++..+. .+++|++|++++|.+++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3688999999988 7776666554 2368999999988 78887776664 4678899999999999888777653
Q ss_pred ----cCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHH---cCCCCcEEEecCCCCCC
Q 007372 436 ----GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVT 508 (606)
Q Consensus 436 ----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~ 508 (606)
..+.|++|++++|. +++.+...++.+. ..+++|++|++++| .+++.++..+++ .+++|++|++++|. |+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L-~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGL-AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHH-HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHH-hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 35789999999986 8777766654211 14678999999998 788888776654 35789999999987 88
Q ss_pred HHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCC---ceEEE--eeceeccCCChhHHHHHhh
Q 007372 509 DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRG---LHWLG--IGQTRLASKGNPVITEIHN 578 (606)
Q Consensus 509 ~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~---L~~L~--l~~~~~~~~~~~~~~~~~~ 578 (606)
+.+...+...+. .+++|++|++++| .+++.+...+.....+. |+.+. +.++.+.......+.++..
T Consensus 225 ~~g~~~l~~~L~---~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~~l~~l~~ 295 (372)
T 3un9_A 225 DTAALALARAAR---EHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQR 295 (372)
T ss_dssp HHHHHHHHHHHH---HCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHHHHHHHHH
Confidence 888777765433 4688999999999 58888887765322222 77777 7777654433333444443
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=2.5e-16 Score=165.09 Aligned_cols=292 Identities=15% Similarity=0.101 Sum_probs=190.7
Q ss_pred CCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCcccc
Q 007372 219 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 298 (606)
Q Consensus 219 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 298 (606)
.+++.|+++++.++. ++. ...++|++|++++|... .++. .+++|++|+++++.. ..+
T Consensus 40 ~~l~~L~ls~n~L~~--lp~--~l~~~L~~L~L~~N~l~------~lp~-------~l~~L~~L~Ls~N~l------~~l 96 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--LPD--CLPAHITTLVIPDNNLT------SLPA-------LPPELRTLEVSGNQL------TSL 96 (622)
T ss_dssp HCCCEEECCSSCCSC--CCS--CCCTTCSEEEECSCCCS------CCCC-------CCTTCCEEEECSCCC------SCC
T ss_pred CCCcEEEecCCCcCc--cCh--hhCCCCcEEEecCCCCC------CCCC-------cCCCCCEEEcCCCcC------CcC
Confidence 458888888777663 111 11278889999887431 1221 457889999988642 112
Q ss_pred ChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 007372 299 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 378 (606)
Q Consensus 299 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 378 (606)
. ..+++|++|+++++ .++. +. ..+++|+.|+++++.. +. +...+++|++|++++|. ++.
T Consensus 97 p--------~~l~~L~~L~Ls~N-~l~~--l~---~~l~~L~~L~L~~N~l-~~-----lp~~l~~L~~L~Ls~N~-l~~ 155 (622)
T 3g06_A 97 P--------VLPPGLLELSIFSN-PLTH--LP---ALPSGLCKLWIFGNQL-TS-----LPVLPPGLQELSVSDNQ-LAS 155 (622)
T ss_dssp C--------CCCTTCCEEEECSC-CCCC--CC---CCCTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSSC-CSC
T ss_pred C--------CCCCCCCEEECcCC-cCCC--CC---CCCCCcCEEECCCCCC-Cc-----CCCCCCCCCEEECcCCc-CCC
Confidence 1 15678899998887 4432 11 1467899999888752 11 22345889999999886 432
Q ss_pred HHHHHhc-CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHH
Q 007372 379 ETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 457 (606)
Q Consensus 379 ~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 457 (606)
+. .+++|+.|++++| .++... ..+++|+.|++++|.++. +....++|+.|++++|. ++.
T Consensus 156 -----l~~~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~-l~~---- 215 (622)
T 3g06_A 156 -----LPALPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNR-LTS---- 215 (622)
T ss_dssp -----CCCCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSS----
T ss_pred -----cCCccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCc-ccc----
Confidence 22 3578999999887 565422 456889999999998764 22245789999999886 442
Q ss_pred HHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCC
Q 007372 458 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 458 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 537 (606)
+. ..+++|+.|++++| .++... ..+++|+.|++++|. ++. ++. .+++|++|++++|
T Consensus 216 -l~----~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N~-L~~-----lp~------~~~~L~~L~Ls~N- 271 (622)
T 3g06_A 216 -LP----ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGNR-LTS-----LPM------LPSGLLSLSVYRN- 271 (622)
T ss_dssp -CC----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSC-----CCC------CCTTCCEEECCSS-
T ss_pred -cC----CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCCC-CCc-----CCc------ccccCcEEeCCCC-
Confidence 22 24578999999998 665422 466899999999996 552 222 3678999999999
Q ss_pred CCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhh----cCCceEEeeccccc--------ccccceecc
Q 007372 538 GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHN----ERPWLTFCLDGCEI--------GCHDGWQFH 601 (606)
Q Consensus 538 ~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~--------~~~~~~~~~ 601 (606)
.++..+ ..+ ..+++|+.|++++|++.......+..+.. ..|...+++.|... .|..+|+..
T Consensus 272 ~L~~lp-~~l--~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~~~~~~~~pl~~~~~~Wf~~ 344 (622)
T 3g06_A 272 QLTRLP-ESL--IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344 (622)
T ss_dssp CCCSCC-GGG--GGSCTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC----CCCCHHHHHHTTCCC
T ss_pred CCCcCC-HHH--hhccccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCCcccccccccccchhhhccc
Confidence 576432 223 36889999999999977654444444432 22334455555332 266788765
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=3e-17 Score=167.28 Aligned_cols=228 Identities=13% Similarity=0.076 Sum_probs=96.6
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCC
Q 007372 311 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 390 (606)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 390 (606)
++++.|+++++ .++..... .+..+++|+.|+++++.. .... ......+++|++|++++|. ++......+..+++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~Ls~n~i-~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVN-SFKHLRHLEILQLSRNHI-RTIE-IGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSC-CCCEECTT-TTSSCSSCCEEECCSSCC-CEEC-GGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSC
T ss_pred CCCcEEEccCC-cCCeeCHH-HhhCCCCCCEEECCCCcC-CccC-hhhccCCccCCEEECCCCc-CCeeCHhHhhccccC
Confidence 56777887776 34321111 123456666666665531 1100 0112334555555555543 333222234445555
Q ss_pred cEEEccCCCCCChHHHHcccCCCCCCEEEccCC-CCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCC
Q 007372 391 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS 469 (606)
Q Consensus 391 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~ 469 (606)
++|++++| .++......+..+++|++|++++| .++.... .....+++|++|++++|. ++.. ..+ ..+++
T Consensus 139 ~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~--~~~-----~~l~~ 208 (440)
T 3zyj_A 139 KELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCN-LREI--PNL-----TPLIK 208 (440)
T ss_dssp CEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSC-CSSC--CCC-----TTCSS
T ss_pred ceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCc-Cccc--ccc-----CCCcc
Confidence 55555554 344333333445555555555553 2221111 111234555555555554 2211 111 23445
Q ss_pred CCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhc
Q 007372 470 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR 549 (606)
Q Consensus 470 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 549 (606)
|+.|++++| .++......+ ..+++|++|++++|. ++......+. .+++|++|++++| .++......+
T Consensus 209 L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~-- 275 (440)
T 3zyj_A 209 LDELDLSGN-HLSAIRPGSF-QGLMHLQKLWMIQSQ-IQVIERNAFD-------NLQSLVEINLAHN-NLTLLPHDLF-- 275 (440)
T ss_dssp CCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTCC-CCEECTTSST-------TCTTCCEEECTTS-CCCCCCTTTT--
T ss_pred cCEEECCCC-ccCccChhhh-ccCccCCEEECCCCc-eeEEChhhhc-------CCCCCCEEECCCC-CCCccChhHh--
Confidence 555555554 3333222222 234555555555554 3322211111 2445555555555 2433222222
Q ss_pred CCCCCceEEEeeceecc
Q 007372 550 PSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 550 ~~~~~L~~L~l~~~~~~ 566 (606)
..+++|+.|++++|++.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 13445555555555544
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=2.1e-17 Score=161.89 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=136.3
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
.++|++|+++++.+.... +..+..+++|++|++++|.. +......+..+++|++|+++++... .
T Consensus 53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~~L~~L~L~~n~l~------~ 116 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKI---------SKIHEKAFSPLRKLQKLYISKNHLV------E 116 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC---------CEECGGGSTTCTTCCEEECCSSCCC------S
T ss_pred CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCcc---------CccCHhHhhCcCCCCEEECCCCcCC------c
Confidence 467888888877766422 22235578888888887633 2222334667788888888776421 1
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
+.. ...++|++|+++++ .++... ...+..+++|+.|++++ +. ++
T Consensus 117 l~~-------~~~~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~--------------------------n~-l~ 160 (332)
T 2ft3_A 117 IPP-------NLPSSLVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGG--------------------------NP-LE 160 (332)
T ss_dssp CCS-------SCCTTCCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCS--------------------------CC-CB
T ss_pred cCc-------cccccCCEEECCCC-ccCccC-HhHhCCCccCCEEECCC--------------------------Cc-cc
Confidence 111 01256666666665 332110 00112344555555544 43 22
Q ss_pred HH--HHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHH
Q 007372 378 SE--TVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKG 455 (606)
Q Consensus 378 ~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 455 (606)
.. ....+..+ +|+.|++++| .++.... .-.++|++|++++|.++......+ ..+++|++|++++|. ++...
T Consensus 161 ~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~N~-l~~~~ 233 (332)
T 2ft3_A 161 NSGFEPGAFDGL-KLNYLRISEA-KLTGIPK---DLPETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQ-IRMIE 233 (332)
T ss_dssp GGGSCTTSSCSC-CCSCCBCCSS-BCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCBCCSSC-CCCCC
T ss_pred cCCCCcccccCC-ccCEEECcCC-CCCccCc---cccCCCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCc-CCcCC
Confidence 11 11112223 5666666655 3333110 112456666666665544322222 235666666666664 33322
Q ss_pred HHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccC
Q 007372 456 ISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 535 (606)
Q Consensus 456 ~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 535 (606)
...+. .+++|++|++++| .++... ..+ ..+++|++|++++|. ++......+..... ....++|+.|++++
T Consensus 234 ~~~~~-----~l~~L~~L~L~~N-~l~~lp-~~l-~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~-~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 234 NGSLS-----FLPTLRELHLDNN-KLSRVP-AGL-PDLKLLQVVYLHTNN-ITKVGVNDFCPVGF-GVKRAYYNGISLFN 303 (332)
T ss_dssp TTGGG-----GCTTCCEEECCSS-CCCBCC-TTG-GGCTTCCEEECCSSC-CCBCCTTSSSCSSC-CSSSCCBSEEECCS
T ss_pred hhHhh-----CCCCCCEEECCCC-cCeecC-hhh-hcCccCCEEECCCCC-CCccChhHcccccc-ccccccccceEeec
Confidence 22222 4567777777766 454211 112 356777777777776 55433322222100 00146688888888
Q ss_pred CCCCCHHHHHHhhcCCCCCceEEEeecee
Q 007372 536 CIGLSVDSLRWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 536 c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 564 (606)
|+ ++...+....-..+++|+.+++++|+
T Consensus 304 N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred Cc-ccccccCcccccccchhhhhhccccc
Confidence 85 44211111111357788888888775
No 61
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.61 E-value=5.8e-15 Score=145.44 Aligned_cols=195 Identities=19% Similarity=0.228 Sum_probs=137.8
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHH---Hc-CCCCccEEEccCCCCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHccc
Q 007372 336 CHSLKKFEVRSASFLSDLAFHDL---TG-VPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS 410 (606)
Q Consensus 336 ~~~L~~L~l~~~~~~~~~~~~~l---~~-~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~ 410 (606)
.++|+.|+++++. ++......+ .. .+++|++|++++|. +++.++..+. .+++|+.|++++| .+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 4678899998876 555443333 22 34689999999887 7877777665 4678899999888 78887766652
Q ss_pred -----CCCCCCEEEccCCCCChHHHHHHH---hcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCC
Q 007372 411 -----CLRKLTALNLTGADITDSGLSILA---QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGIS 482 (606)
Q Consensus 411 -----~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~ 482 (606)
..++|+.|++++|.+++.+...++ ..+++|++|++++|. +++.++..+..+. ..+++|++|++++| .++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L-~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQL-DRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHG-GGCSCCCEEECCSS-CCC
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHH-hcCCCcCeEECCCC-CCC
Confidence 467899999999988887776654 357889999999887 8877766554222 24568999999988 888
Q ss_pred HHHHHHHHH---cCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCC--CCCEEe--ccCCCCCCHH
Q 007372 483 DDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSK--QLRRLD--LCNCIGLSVD 542 (606)
Q Consensus 483 ~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~--~L~~L~--l~~c~~l~~~ 542 (606)
+.+...+++ .+++|++|++++|. |++.++..+..... .. .|+.+. +.++ .++..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~----~~~~~L~~l~~ll~~~-~~~~~ 285 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGG----AAEGGARVVVSLTEGT-AVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC----------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhc----CCCccchhhHhhhcCC-ccCHH
Confidence 887776654 35889999999887 88888888876322 11 166776 5555 35443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.61 E-value=2.8e-17 Score=168.21 Aligned_cols=229 Identities=15% Similarity=0.076 Sum_probs=107.7
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCC
Q 007372 311 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 390 (606)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 390 (606)
++++.|+++++ .++..... .+..+++|+.|+++++.. .... ......+++|++|+++++. ++......+..+++|
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~Ls~n~i-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQAD-TFRHLHHLEVLQLGRNSI-RQIE-VGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTC
T ss_pred CCccEEECcCC-cCceECHH-HcCCCCCCCEEECCCCcc-CCcC-hhhccCcccCCEEECCCCc-CCccChhhhcccCCC
Confidence 57888888877 44421111 123566777777766531 1110 0112335566666666654 333333334455666
Q ss_pred cEEEccCCCCCChHHHHcccCCCCCCEEEccCC-CCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCC
Q 007372 391 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS 469 (606)
Q Consensus 391 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~ 469 (606)
++|++++| .++......+..+++|+.|++++| .+...... ....+++|+.|++++|. ++.. ..+ ..+++
T Consensus 150 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~-l~~~--~~~-----~~l~~ 219 (452)
T 3zyi_A 150 RELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCN-IKDM--PNL-----TPLVG 219 (452)
T ss_dssp CEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSC-CSSC--CCC-----TTCTT
T ss_pred CEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCc-cccc--ccc-----ccccc
Confidence 66666655 444333334455566666666653 22221111 11235566666666554 3221 111 24556
Q ss_pred CCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhc
Q 007372 470 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR 549 (606)
Q Consensus 470 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 549 (606)
|+.|++++| .++......+ ..+++|+.|++++|. ++......+. .+++|++|++++| .++......+
T Consensus 220 L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~-- 286 (452)
T 3zyi_A 220 LEELEMSGN-HFPEIRPGSF-HGLSSLKKLWVMNSQ-VSLIERNAFD-------GLASLVELNLAHN-NLSSLPHDLF-- 286 (452)
T ss_dssp CCEEECTTS-CCSEECGGGG-TTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCSCCCTTSS--
T ss_pred ccEEECcCC-cCcccCcccc-cCccCCCEEEeCCCc-CceECHHHhc-------CCCCCCEEECCCC-cCCccChHHh--
Confidence 666666655 4433222222 244556666665554 3322222222 3555666666655 3443222222
Q ss_pred CCCCCceEEEeeceeccC
Q 007372 550 PSFRGLHWLGIGQTRLAS 567 (606)
Q Consensus 550 ~~~~~L~~L~l~~~~~~~ 567 (606)
..+++|+.|++++|++.-
T Consensus 287 ~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred ccccCCCEEEccCCCcCC
Confidence 235556666666665543
No 63
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.59 E-value=2.2e-17 Score=161.71 Aligned_cols=201 Identities=16% Similarity=0.090 Sum_probs=132.5
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChH--HHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADT--CLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
++|++|+++++. +.......+..+++|+.|+++++ .+++. ....+..+ +|+.|++++|.++.... ...++|
T Consensus 123 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~----~~~~~L 195 (332)
T 2ft3_A 123 SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK----DLPETL 195 (332)
T ss_dssp TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS----SSCSSC
T ss_pred ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCCccCc----cccCCC
Confidence 677788887776 45443445678999999999998 66542 23444555 89999999997765211 124789
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCC
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 520 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 520 (606)
++|++++|. ++......+. .+++|+.|++++| .++......+ ..+++|++|++++|. ++.. ...+.
T Consensus 196 ~~L~l~~n~-i~~~~~~~l~-----~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l-p~~l~---- 261 (332)
T 2ft3_A 196 NELHLDHNK-IQAIELEDLL-----RYSKLYRLGLGHN-QIRMIENGSL-SFLPTLRELHLDNNK-LSRV-PAGLP---- 261 (332)
T ss_dssp SCCBCCSSC-CCCCCTTSST-----TCTTCSCCBCCSS-CCCCCCTTGG-GGCTTCCEEECCSSC-CCBC-CTTGG----
T ss_pred CEEECCCCc-CCccCHHHhc-----CCCCCCEEECCCC-cCCcCChhHh-hCCCCCCEEECCCCc-Ceec-Chhhh----
Confidence 999999986 5543333333 6889999999998 6654333233 467999999999997 6521 11122
Q ss_pred CcccCCCCCEEeccCCCCCCHHHHHHhhc----CCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeeccc
Q 007372 521 DQEKSKQLRRLDLCNCIGLSVDSLRWVKR----PSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGC 590 (606)
Q Consensus 521 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~ 590 (606)
.+++|++|++++| .++..+...+.. ...+.|+.|++++|++... +.........+.++ +.+.||
T Consensus 262 ---~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 262 ---DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp ---GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTTBCCSTTEEC---
T ss_pred ---cCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccccc--ccCcccccccchhhhhhcccc
Confidence 5899999999999 477655544431 1257899999999997632 12223334455555 777665
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=4.8e-17 Score=155.60 Aligned_cols=187 Identities=18% Similarity=0.106 Sum_probs=122.7
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 361 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 361 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
.+++|++|+++++. ++......+..+++|++|++++|..++......+..+++|++|++++|.++..... ....+++|
T Consensus 54 ~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L 131 (285)
T 1ozn_A 54 ACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAAL 131 (285)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTC
T ss_pred cCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh-HhhCCcCC
Confidence 34566666666554 44433344566788888888877435555455667778888888888876643222 12347788
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCC
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 520 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 520 (606)
++|++++|. ++......+ ..+++|++|++++| .++......+ ..+++|++|++++|. ++......+.
T Consensus 132 ~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~---- 198 (285)
T 1ozn_A 132 QYLYLQDNA-LQALPDDTF-----RDLGNLTHLFLHGN-RISSVPERAF-RGLHSLDRLLLHQNR-VAHVHPHAFR---- 198 (285)
T ss_dssp CEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECTTTTT----
T ss_pred CEEECCCCc-ccccCHhHh-----ccCCCccEEECCCC-cccccCHHHh-cCccccCEEECCCCc-ccccCHhHcc----
Confidence 888888876 443222222 25788888888887 5654332223 356889999998887 6543333333
Q ss_pred CcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 521 DQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 521 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.+++|++|++++| .++......+. .+++|+.|++++|++..+
T Consensus 199 ---~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 199 ---DLGRLMTLYLFAN-NLSALPTEALA--PLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp ---TCTTCCEEECCSS-CCSCCCHHHHT--TCTTCCEEECCSSCEECS
T ss_pred ---CcccccEeeCCCC-cCCcCCHHHcc--cCcccCEEeccCCCccCC
Confidence 5889999999999 47665554453 688999999999998765
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=5.7e-17 Score=157.39 Aligned_cols=263 Identities=16% Similarity=0.127 Sum_probs=139.8
Q ss_pred CCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCcccc
Q 007372 219 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 298 (606)
Q Consensus 219 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 298 (606)
.+++..+++.+.+.. .+..+...+++|++|++++|.. +......+..+++|++|+++++.. ...
T Consensus 10 ~~l~i~~ls~~~l~~-~~~~~~~~~~~L~~L~L~~n~l---------~~~~~~~~~~l~~L~~L~Ls~n~l------~~~ 73 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPL---------SQISAADLAPFTKLELLNLSSNVL------YET 73 (317)
T ss_dssp TEEEEESCCTTTHHH-HHHHHHTTGGGCSEEECTTSCC---------CCCCHHHHTTCTTCCEEECTTSCC------EEE
T ss_pred CceeEeeccccchhh-hHHHHhccCCCCCEEECcCCcc---------CcCCHHHhhCCCcCCEEECCCCcC------Ccc
Confidence 345555555555533 4556666678888888888643 222233466778888888887642 111
Q ss_pred ChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 007372 299 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 378 (606)
Q Consensus 299 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 378 (606)
.. ...+++|++|+++++ .++.. ...++|+.|++++ |. ++.
T Consensus 74 ~~------~~~l~~L~~L~Ls~n-~l~~l------~~~~~L~~L~l~~--------------------------n~-l~~ 113 (317)
T 3o53_A 74 LD------LESLSTLRTLDLNNN-YVQEL------LVGPSIETLHAAN--------------------------NN-ISR 113 (317)
T ss_dssp EE------ETTCTTCCEEECCSS-EEEEE------EECTTCCEEECCS--------------------------SC-CSE
T ss_pred hh------hhhcCCCCEEECcCC-ccccc------cCCCCcCEEECCC--------------------------Cc-cCC
Confidence 11 224566777777666 33210 0224455555544 33 221
Q ss_pred HHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHH
Q 007372 379 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 458 (606)
Q Consensus 379 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 458 (606)
.. ...+++|+.|++++| .++......+..+++|+.|++++|.+++.....+...+++|++|++++|. ++.. ..
T Consensus 114 ~~---~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~ 186 (317)
T 3o53_A 114 VS---CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KG 186 (317)
T ss_dssp EE---ECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--EC
T ss_pred cC---ccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc--cc
Confidence 11 112455666666665 44443333445556666666666665554333333345666666666665 3322 11
Q ss_pred HHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCC
Q 007372 459 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG 538 (606)
Q Consensus 459 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 538 (606)
. ..+++|++|++++| .++..... + ..+++|++|++++|. ++. ++..+. .+++|+.|++++|+
T Consensus 187 ~-----~~l~~L~~L~Ls~N-~l~~l~~~-~-~~l~~L~~L~L~~N~-l~~-----l~~~~~---~l~~L~~L~l~~N~- 248 (317)
T 3o53_A 187 Q-----VVFAKLKTLDLSSN-KLAFMGPE-F-QSAAGVTWISLRNNK-LVL-----IEKALR---FSQNLEHFDLRGNG- 248 (317)
T ss_dssp C-----CCCTTCCEEECCSS-CCCEECGG-G-GGGTTCSEEECTTSC-CCE-----ECTTCC---CCTTCCEEECTTCC-
T ss_pred c-----cccccCCEEECCCC-cCCcchhh-h-cccCcccEEECcCCc-ccc-----hhhHhh---cCCCCCEEEccCCC-
Confidence 1 13567777777766 45432211 2 345677777777775 442 111111 46777777777774
Q ss_pred CC-HHHHHHhhcCCCCCceEEEeecee
Q 007372 539 LS-VDSLRWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 539 l~-~~~~~~l~~~~~~~L~~L~l~~~~ 564 (606)
++ +.....+. .+++|+.|++++++
T Consensus 249 ~~~~~~~~~~~--~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 249 FHCGTLRDFFS--KNQRVQTVAKQTVK 273 (317)
T ss_dssp CBHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred ccCcCHHHHHh--ccccceEEECCCch
Confidence 55 33333332 46677777777554
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=1e-16 Score=153.28 Aligned_cols=209 Identities=18% Similarity=0.108 Sum_probs=151.4
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCC-CChHHHHHHHhcCCCc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD-ITDSGLSILAQGNLPI 440 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L 440 (606)
.++|++|+++++. ++......+..+++|++|+++++ .++......+..+++|++|++++|. ++...... ...+++|
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTC
T ss_pred CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHH-hcCCcCC
Confidence 3577777777765 55544445678899999999998 7776656678889999999999996 66543222 2357999
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCC
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 520 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 520 (606)
++|++++|. ++......+ ..+++|++|++++| .++......+ ..+++|++|++++|. ++......+.
T Consensus 108 ~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~---- 174 (285)
T 1ozn_A 108 HTLHLDRCG-LQELGPGLF-----RGLAALQYLYLQDN-ALQALPDDTF-RDLGNLTHLFLHGNR-ISSVPERAFR---- 174 (285)
T ss_dssp CEEECTTSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCEECTTTTT----
T ss_pred CEEECCCCc-CCEECHhHh-----hCCcCCCEEECCCC-cccccCHhHh-ccCCCccEEECCCCc-ccccCHHHhc----
Confidence 999999997 543322222 36899999999998 5654332223 467999999999997 6643222233
Q ss_pred CcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeeccccccccc
Q 007372 521 DQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 596 (606)
Q Consensus 521 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~~ 596 (606)
.+++|++|++++| .++......+. .+++|+.|++++|.+..... ......+.++ +++.||++.|..
T Consensus 175 ---~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 175 ---GLHSLDRLLLHQN-RVAHVHPHAFR--DLGRLMTLYLFANNLSALPT----EALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp ---TCTTCCEEECCSS-CCCEECTTTTT--TCTTCCEEECCSSCCSCCCH----HHHTTCTTCCEEECCSSCEECSG
T ss_pred ---CccccCEEECCCC-cccccCHhHcc--CcccccEeeCCCCcCCcCCH----HHcccCcccCEEeccCCCccCCC
Confidence 5899999999999 47665444443 68999999999999876522 2234557777 999999999983
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.58 E-value=1.1e-17 Score=161.78 Aligned_cols=210 Identities=14% Similarity=0.137 Sum_probs=125.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHH-HcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCL-RSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
+++|++|+++++. +... ...+..+++|++|+++++ .++.... ..+..+++|++|++++|.++..... ....+++|
T Consensus 77 ~~~L~~L~Ls~n~-i~~l-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L 152 (306)
T 2z66_A 77 TTSLKYLDLSFNG-VITM-SSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSL 152 (306)
T ss_dssp CSCCCEEECCSCS-EEEE-EEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTC
T ss_pred ccccCEEECCCCc-cccC-hhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCC
Confidence 3455555555543 2210 112446778888888776 4443322 4566778888888888766543221 12346788
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCC
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 520 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 520 (606)
++|++++|. ++...+.... ..+++|++|++++| .+++.....+ ..+++|++|++++|. ++......+.
T Consensus 153 ~~L~l~~n~-l~~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~---- 220 (306)
T 2z66_A 153 EVLKMAGNS-FQENFLPDIF----TELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHNN-FFSLDTFPYK---- 220 (306)
T ss_dssp CEEECTTCE-EGGGEECSCC----TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-CSBCCSGGGT----
T ss_pred CEEECCCCc-cccccchhHH----hhCcCCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCCc-cCccChhhcc----
Confidence 888888876 4331111111 36788999999888 6655433333 356889999999887 5543222233
Q ss_pred CcccCCCCCEEeccCCCCCCHHHHHHhhcCCC-CCceEEEeeceeccCC-ChhHHHHHhhcCCceEEeecccccccc
Q 007372 521 DQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSF-RGLHWLGIGQTRLASK-GNPVITEIHNERPWLTFCLDGCEIGCH 595 (606)
Q Consensus 521 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~-~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~g~~~~~~ 595 (606)
.+++|++|++++| .++......+. .+ ++|+.|++++|++..+ ....+..+......+ ....+...|.
T Consensus 221 ---~l~~L~~L~L~~N-~l~~~~~~~~~--~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~--~~~~~~~~C~ 289 (306)
T 2z66_A 221 ---CLNSLQVLDYSLN-HIMTSKKQELQ--HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL--LVEVERMECA 289 (306)
T ss_dssp ---TCTTCCEEECTTS-CCCBCSSSSCC--CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGG--BSCGGGCBEE
T ss_pred ---CcccCCEeECCCC-CCcccCHHHHH--hhhccCCEEEccCCCeecccChHHHHHHHHhhhhh--hccccccccC
Confidence 5889999999999 46654433332 45 4899999999998765 222333333333322 3345566665
No 68
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.56 E-value=3.3e-18 Score=165.64 Aligned_cols=206 Identities=15% Similarity=0.098 Sum_probs=119.9
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCC-C
Q 007372 361 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNL-P 439 (606)
Q Consensus 361 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~-~ 439 (606)
.+++|++|+++++. ++......+..+++|++|++++| .++......+..+++|++|++++|.+++.....+.. ++ .
T Consensus 99 ~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~ 175 (313)
T 1ogq_A 99 KLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKL 175 (313)
T ss_dssp GCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTT
T ss_pred cCCCCCEEECcCCe-eCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhc
Confidence 34566666666554 33333334566777777877776 555433455667777888888877765332222332 44 7
Q ss_pred ccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhC
Q 007372 440 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ 519 (606)
Q Consensus 440 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 519 (606)
|+.|++++|. ++......+. .++ |+.|++++| .++......+ ..+++|+.|++++|. ++.... .+.
T Consensus 176 L~~L~L~~N~-l~~~~~~~~~-----~l~-L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~--- 241 (313)
T 1ogq_A 176 FTSMTISRNR-LTGKIPPTFA-----NLN-LAFVDLSRN-MLEGDASVLF-GSDKNTQKIHLAKNS-LAFDLG-KVG--- 241 (313)
T ss_dssp CCEEECCSSE-EEEECCGGGG-----GCC-CSEEECCSS-EEEECCGGGC-CTTSCCSEEECCSSE-ECCBGG-GCC---
T ss_pred CcEEECcCCe-eeccCChHHh-----CCc-ccEEECcCC-cccCcCCHHH-hcCCCCCEEECCCCc-eeeecC-ccc---
Confidence 7888887775 4322222233 333 888888877 4443222222 356788888888876 432111 111
Q ss_pred CCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 520 PDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 520 ~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
.+++|++|++++|. ++......+. .+++|+.|++++|++....+. . ...+.++ +.+.||+.-|.
T Consensus 242 ----~l~~L~~L~Ls~N~-l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~----~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 242 ----LSKNLNGLDLRNNR-IYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQ----G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ----CCTTCCEEECCSSC-CEECCCGGGG--GCTTCCEEECCSSEEEEECCC----S-TTGGGSCGGGTCSSSEEES
T ss_pred ----ccCCCCEEECcCCc-ccCcCChHHh--cCcCCCEEECcCCcccccCCC----C-ccccccChHHhcCCCCccC
Confidence 47788888888884 5533233332 578888888888887644222 1 2334555 77777776664
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.55 E-value=2.8e-17 Score=159.03 Aligned_cols=212 Identities=12% Similarity=0.061 Sum_probs=144.1
Q ss_pred cCCCCccEEEccCCCCCCHHH--HHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcC
Q 007372 360 GVPCALVEVRLLWCRLITSET--VKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGN 437 (606)
Q Consensus 360 ~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 437 (606)
..+++|++|+++++. ++..+ ...+..+++|+.|++++| .+... ...+..+++|++|++++|.++..........+
T Consensus 49 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (306)
T 2z66_A 49 DKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125 (306)
T ss_dssp TTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTC
T ss_pred hccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhc
Confidence 345677777777665 44221 233446899999999998 55532 23467899999999999976554322233458
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHh
Q 007372 438 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 517 (606)
Q Consensus 438 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 517 (606)
++|++|++++|. ++......+ ..+++|++|++++| .+++.........+++|++|++++|. +++.....+.
T Consensus 126 ~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~- 196 (306)
T 2z66_A 126 RNLIYLDISHTH-TRVAFNGIF-----NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN- 196 (306)
T ss_dssp TTCCEEECTTSC-CEECSTTTT-----TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-
T ss_pred cCCCEEECCCCc-CCccchhhc-----ccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc-
Confidence 999999999987 433222222 36899999999998 55432112222467999999999997 6653333333
Q ss_pred hCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcC-CceE-Eeecccccccc
Q 007372 518 KQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNER-PWLT-FCLDGCEIGCH 595 (606)
Q Consensus 518 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~l~-~~~~g~~~~~~ 595 (606)
.+++|++|++++|. ++......+ ..+++|+.|++++|++....... + ... +.++ +++.||++.|.
T Consensus 197 ------~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~---~-~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 197 ------SLSSLQVLNMSHNN-FFSLDTFPY--KCLNSLQVLDYSLNHIMTSKKQE---L-QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ------TCTTCCEEECTTSC-CSBCCSGGG--TTCTTCCEEECTTSCCCBCSSSS---C-CCCCTTCCEEECTTCCEECS
T ss_pred ------CCCCCCEEECCCCc-cCccChhhc--cCcccCCEeECCCCCCcccCHHH---H-HhhhccCCEEEccCCCeecc
Confidence 58999999999994 665433333 36899999999999987652222 2 223 3565 99999999988
Q ss_pred c
Q 007372 596 D 596 (606)
Q Consensus 596 ~ 596 (606)
.
T Consensus 264 c 264 (306)
T 2z66_A 264 C 264 (306)
T ss_dssp G
T ss_pred c
Confidence 3
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=6.1e-17 Score=157.20 Aligned_cols=223 Identities=16% Similarity=0.079 Sum_probs=153.1
Q ss_pred HHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHh
Q 007372 305 LLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKL 384 (606)
Q Consensus 305 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 384 (606)
.+...+++|++|+++++ .++.... ..+..+++|+.|+++++....... ...+++|++|++++|. ++ .+
T Consensus 28 ~~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~-l~-----~l 95 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQ-----EL 95 (317)
T ss_dssp HHHTTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSE-EE-----EE
T ss_pred HHhccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCc-cc-----cc
Confidence 34445567777777776 4443211 223467788888887765321111 3467889999998876 33 24
Q ss_pred cCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcC
Q 007372 385 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG 464 (606)
Q Consensus 385 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 464 (606)
...++|+.|++++| .++... ...+++|+.|++++|.++......+ ..+++|++|++++|. ++......+.
T Consensus 96 ~~~~~L~~L~l~~n-~l~~~~---~~~~~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~---- 165 (317)
T 3o53_A 96 LVGPSIETLHAANN-NISRVS---CSRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELA---- 165 (317)
T ss_dssp EECTTCCEEECCSS-CCSEEE---ECCCSSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTSC-CCEEEGGGGG----
T ss_pred cCCCCcCEEECCCC-ccCCcC---ccccCCCCEEECCCCCCCCccchhh-hccCCCCEEECCCCC-CCcccHHHHh----
Confidence 45699999999998 666532 2357889999999998886432222 347899999999997 6654444443
Q ss_pred CCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHH
Q 007372 465 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 544 (606)
Q Consensus 465 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 544 (606)
..+++|++|++++| .++.. ... ..+++|++|++++|. ++..... +. .+++|++|++++| .++....
T Consensus 166 ~~l~~L~~L~L~~N-~l~~~--~~~-~~l~~L~~L~Ls~N~-l~~l~~~-~~-------~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 166 ASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGPE-FQ-------SAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp GGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSSC-CCEECGG-GG-------GGTTCSEEECTTS-CCCEECT
T ss_pred hccCcCCEEECCCC-cCccc--ccc-cccccCCEEECCCCc-CCcchhh-hc-------ccCcccEEECcCC-cccchhh
Confidence 35789999999999 66543 111 147999999999997 6642211 33 5889999999999 5764221
Q ss_pred HHhhcCCCCCceEEEeeceecc
Q 007372 545 RWVKRPSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 545 ~~l~~~~~~~L~~L~l~~~~~~ 566 (606)
.+ ..+++|+.|++++|++.
T Consensus 232 -~~--~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 232 -AL--RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -TC--CCCTTCCEEECTTCCCB
T ss_pred -Hh--hcCCCCCEEEccCCCcc
Confidence 12 46899999999999976
No 71
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=1.7e-17 Score=160.54 Aligned_cols=251 Identities=14% Similarity=0.078 Sum_probs=131.5
Q ss_pred CCccEEecccCCCCH--HHHHHHHhhCCCCCEEEcCC-CCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCc
Q 007372 219 FNLRSLSLVLDVITD--ELLITITASLPFLVELDLED-RPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 295 (606)
Q Consensus 219 ~~L~~L~l~~~~~~~--~~l~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 295 (606)
.++++|+++++.+.. .... .+..+++|++|++++ +. +.......+..+++|++|+++++..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~---------l~~~~p~~l~~l~~L~~L~Ls~n~l------ 113 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINN---------LVGPIPPAIAKLTQLHYLYITHTNV------ 113 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETT---------EESCCCGGGGGCTTCSEEEEEEECC------
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCc---------ccccCChhHhcCCCCCEEECcCCee------
Confidence 578888888877664 2222 335588899999884 32 2212223466778888888887642
Q ss_pred cccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 007372 296 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 375 (606)
Q Consensus 296 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 375 (606)
+.... .....+++|++|+++++ .++.. +...+..+++|++|++++ |.
T Consensus 114 ---~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~--------------------------N~- 160 (313)
T 1ogq_A 114 ---SGAIP-DFLSQIKTLVTLDFSYN-ALSGT-LPPSISSLPNLVGITFDG--------------------------NR- 160 (313)
T ss_dssp ---EEECC-GGGGGCTTCCEEECCSS-EEESC-CCGGGGGCTTCCEEECCS--------------------------SC-
T ss_pred ---CCcCC-HHHhCCCCCCEEeCCCC-ccCCc-CChHHhcCCCCCeEECcC--------------------------Cc-
Confidence 11000 01124566777777666 22210 001122344555555544 43
Q ss_pred CCHHHHHHhcCCC-CCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHH
Q 007372 376 ITSETVKKLASSR-NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 454 (606)
Q Consensus 376 l~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 454 (606)
+++.....+..++ +|+.|++++| .++......+..++ |+.|++++|.+++.... ....+++|+.|++++|. ++..
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~ 236 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNS-LAFD 236 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSE-ECCB
T ss_pred ccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEECCCCc-eeee
Confidence 2222223344554 6666666665 44433333444444 66677766654432111 12245667777777665 3211
Q ss_pred HHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEecc
Q 007372 455 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 534 (606)
Q Consensus 455 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~ 534 (606)
. ..+ ..+++|++|++++| .++......+ ..+++|++|++++|. ++... +..+.+++|+.++++
T Consensus 237 ~-~~~-----~~l~~L~~L~Ls~N-~l~~~~p~~l-~~l~~L~~L~Ls~N~-l~~~i--------p~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 237 L-GKV-----GLSKNLNGLDLRNN-RIYGTLPQGL-TQLKFLHSLNVSFNN-LCGEI--------PQGGNLQRFDVSAYA 299 (313)
T ss_dssp G-GGC-----CCCTTCCEEECCSS-CCEECCCGGG-GGCTTCCEEECCSSE-EEEEC--------CCSTTGGGSCGGGTC
T ss_pred c-Ccc-----cccCCCCEEECcCC-cccCcCChHH-hcCcCCCEEECcCCc-ccccC--------CCCccccccChHHhc
Confidence 1 111 24677777777776 4542222222 356777788777775 43211 111146778888888
Q ss_pred CCCCC
Q 007372 535 NCIGL 539 (606)
Q Consensus 535 ~c~~l 539 (606)
+|+.+
T Consensus 300 ~N~~l 304 (313)
T 1ogq_A 300 NNKCL 304 (313)
T ss_dssp SSSEE
T ss_pred CCCCc
Confidence 77644
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=3e-16 Score=159.91 Aligned_cols=227 Identities=15% Similarity=0.069 Sum_probs=156.6
Q ss_pred CCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHH
Q 007372 277 HHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFH 356 (606)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 356 (606)
++++.|+++++.. ..+.... ...+++|+.|+++++ .++.... ..+..+++|+.|+++++.. +.. ..
T Consensus 64 ~~l~~L~L~~n~i------~~~~~~~----~~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~l-~~~-~~ 129 (440)
T 3zyj_A 64 TNTRLLNLHENQI------QIIKVNS----FKHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNRL-TTI-PN 129 (440)
T ss_dssp TTCSEEECCSCCC------CEECTTT----TSSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSCC-SSC-CT
T ss_pred CCCcEEEccCCcC------CeeCHHH----hhCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCcC-Cee-CH
Confidence 6899999988642 2222211 136789999999988 4543221 1234689999999998742 211 11
Q ss_pred HHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhc
Q 007372 357 DLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQG 436 (606)
Q Consensus 357 ~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 436 (606)
.....+++|++|+++++. +.......+..+++|+.|+++++..++......+..+++|+.|++++|.++... . ...
T Consensus 130 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~ 205 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--N-LTP 205 (440)
T ss_dssp TTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--C-CTT
T ss_pred hHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--c-cCC
Confidence 123567899999999987 555444456678999999999876666655556778899999999999776432 1 235
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHH
Q 007372 437 NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALA 516 (606)
Q Consensus 437 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 516 (606)
+++|++|++++|. ++......+. .+++|+.|++++| .++......+ ..+++|++|++++|. ++......+.
T Consensus 206 l~~L~~L~Ls~N~-l~~~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~ 276 (440)
T 3zyj_A 206 LIKLDELDLSGNH-LSAIRPGSFQ-----GLMHLQKLWMIQS-QIQVIERNAF-DNLQSLVEINLAHNN-LTLLPHDLFT 276 (440)
T ss_dssp CSSCCEEECTTSC-CCEECTTTTT-----TCTTCCEEECTTC-CCCEECTTSS-TTCTTCCEEECTTSC-CCCCCTTTTS
T ss_pred CcccCEEECCCCc-cCccChhhhc-----cCccCCEEECCCC-ceeEEChhhh-cCCCCCCEEECCCCC-CCccChhHhc
Confidence 7899999999986 5544333333 6889999999998 6665433333 467899999999997 6543322232
Q ss_pred hhCCCcccCCCCCEEeccCCC
Q 007372 517 RKQPDQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 517 ~~~~~~~~~~~L~~L~l~~c~ 537 (606)
.+++|+.|++++|+
T Consensus 277 -------~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 277 -------PLHHLERIHLHHNP 290 (440)
T ss_dssp -------SCTTCCEEECCSSC
T ss_pred -------cccCCCEEEcCCCC
Confidence 58899999999886
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=2.6e-15 Score=153.57 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=67.5
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+++|+.|++++|..+.......+.++++|+.|++++| .+++ +..+..+++|+.|++++|.++...... ...+++|+
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 245 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD--MPNLTPLVGLEELEMSGNHFPEIRPGS-FHGLSSLK 245 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSS--CCCCTTCTTCCEEECTTSCCSEECGGG-GTTCTTCC
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccc--cccccccccccEEECcCCcCcccCccc-ccCccCCC
Confidence 4555555555544333333333455667777777766 4443 234556666777777766655432222 22356666
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCC
Q 007372 442 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 505 (606)
Q Consensus 442 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 505 (606)
.|++++|. ++......+. .+++|+.|++++| .++......+ ..+++|+.|++++|+
T Consensus 246 ~L~L~~n~-l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 246 KLWVMNSQ-VSLIERNAFD-----GLASLVELNLAHN-NLSSLPHDLF-TPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSC-CCEECTTTTT-----TCTTCCEEECCSS-CCSCCCTTSS-TTCTTCCEEECCSSC
T ss_pred EEEeCCCc-CceECHHHhc-----CCCCCCEEECCCC-cCCccChHHh-ccccCCCEEEccCCC
Confidence 66666665 3332222222 4566666666665 4442221111 234566666666554
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=4.7e-16 Score=150.54 Aligned_cols=183 Identities=16% Similarity=0.112 Sum_probs=88.4
Q ss_pred CCCCccEEEccCCCCCCHH--HHHHhcC--CCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChH-HHH-HH-
Q 007372 361 VPCALVEVRLLWCRLITSE--TVKKLAS--SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS-GLS-IL- 433 (606)
Q Consensus 361 ~~~~L~~L~l~~~~~l~~~--~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~-~l- 433 (606)
.+++|++|+++++. ++.. .+..+.. +++|++|++++| .++......+..+++|++|++++|.+... .+. .+
T Consensus 119 ~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred cCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 34555555555544 3222 1112211 266666666665 45544444555666666666666665442 111 11
Q ss_pred HhcCCCccEEEccCCCCCCH--HHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHH
Q 007372 434 AQGNLPIMNLCLRGCKRVTD--KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDAS 511 (606)
Q Consensus 434 ~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 511 (606)
...+++|++|++++|. ++. .....+. ..+++|++|++++| .++..........+++|++|++++|. ++.
T Consensus 197 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-- 267 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAG-METPSGVCSALA----AARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQ-- 267 (312)
T ss_dssp TTSCTTCCEEECTTSC-CCCHHHHHHHHH----HTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSS--
T ss_pred hccCCCCCEEECCCCc-CcchHHHHHHHH----hcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cCh--
Confidence 1345666666666664 431 1111221 24556666666665 34332110111234566666666665 441
Q ss_pred HHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccC
Q 007372 512 VEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 567 (606)
Q Consensus 512 ~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 567 (606)
++.. -.++|++|++++| .++..+ .+ ..+++|+.|++++|++.+
T Consensus 268 ---ip~~-----~~~~L~~L~Ls~N-~l~~~p--~~--~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 268 ---VPKG-----LPAKLSVLDLSYN-RLDRNP--SP--DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ---CCSS-----CCSEEEEEECCSS-CCCSCC--CT--TTSCEEEEEECTTCTTTC
T ss_pred ---hhhh-----ccCCceEEECCCC-CCCCCh--hH--hhCCCCCEEeccCCCCCC
Confidence 1110 0146666666666 354431 12 246667777777666553
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=2.9e-14 Score=137.39 Aligned_cols=192 Identities=20% Similarity=0.176 Sum_probs=128.9
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCC
Q 007372 337 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 416 (606)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 416 (606)
++|+.|++.++....- . -...+++|+.|++++|. +.+... +..+++|+.|++++| .+++. ..+..+++|+
T Consensus 41 ~~L~~L~l~~~~i~~l---~-~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI---E-GVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGN-PLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HTCCEEECTTSCCCCC---T-TGGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSC-CCSCC--GGGTTCTTCC
T ss_pred CCcCEEEeeCCCccCc---h-hhhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCC-cCCCc--hhhcCCCCCC
Confidence 4555555555432111 1 12345677777777665 443322 667888888888887 56553 4577788888
Q ss_pred EEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCC
Q 007372 417 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGI 496 (606)
Q Consensus 417 ~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 496 (606)
+|++++|.+++.. . ...+++|++|++++|. ++.... +. .+++|++|++++| .+++... + ..+++|
T Consensus 111 ~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~--l~-----~l~~L~~L~l~~n-~l~~~~~--l-~~l~~L 175 (308)
T 1h6u_A 111 TLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ-ITNISP--LA-----GLTNLQYLSIGNA-QVSDLTP--L-ANLSKL 175 (308)
T ss_dssp EEECTTSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGG--GG-----GCTTCCEEECCSS-CCCCCGG--G-TTCTTC
T ss_pred EEECCCCCCCCch--h-hcCCCCCCEEECCCCc-cCcCcc--cc-----CCCCccEEEccCC-cCCCChh--h-cCCCCC
Confidence 8888888776632 2 3457888888888886 443221 33 6788999999888 6654322 3 567899
Q ss_pred cEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 497 IDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 497 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
++|++++|. +++.. .+. .+++|++|++++| .++... .+ ..+++|+.|++++|++...
T Consensus 176 ~~L~l~~n~-l~~~~--~l~-------~l~~L~~L~L~~N-~l~~~~--~l--~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 176 TTLKADDNK-ISDIS--PLA-------SLPNLIEVHLKNN-QISDVS--PL--ANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CEEECCSSC-CCCCG--GGG-------GCTTCCEEECTTS-CCCBCG--GG--TTCTTCCEEEEEEEEEECC
T ss_pred CEEECCCCc-cCcCh--hhc-------CCCCCCEEEccCC-ccCccc--cc--cCCCCCCEEEccCCeeecC
Confidence 999999887 65422 233 5889999999999 466543 23 4689999999999998764
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=5.1e-16 Score=147.67 Aligned_cols=207 Identities=15% Similarity=0.044 Sum_probs=131.1
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCC
Q 007372 337 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 416 (606)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 416 (606)
++|+.|+++++.. +... ......+++|++|++++|. +.......+..+++|+.|++++| .++......+..+++|+
T Consensus 28 ~~l~~L~ls~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPL-RHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCC-CEEC-TTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcc-cccC-HhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCcccc
Confidence 4688999888742 2111 1123456888888888876 55544445667888888888887 66665556677888888
Q ss_pred EEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHH-HHHHhhcCCCCCCCCEEecCCCCCCCHH---HHHHHHHc
Q 007372 417 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI-SHLLCVGGTISQSLTTLDLGYMPGISDD---GILTIAAA 492 (606)
Q Consensus 417 ~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~~ 492 (606)
+|++++|.++...... ...+++|++|++++|. ++...+ ..+. .+++|++|++++| .++.. .+..+ ..
T Consensus 104 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~l~~~~~-----~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~ 174 (276)
T 2z62_A 104 KLVAVETNLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFS-----NLTNLEHLDLSSN-KIQSIYCTDLRVL-HQ 174 (276)
T ss_dssp EEECTTSCCCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGG-----GCTTCCEEECCSS-CCCEECGGGGHHH-HT
T ss_pred EEECCCCCccccCchh-cccCCCCCEEECcCCc-cceecCchhhc-----cCCCCCEEECCCC-CCCcCCHHHhhhh-hh
Confidence 8888888765432211 2347888888888886 443221 2222 5788888888887 55542 23333 22
Q ss_pred CCCCc-EEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 493 GIGII-DLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 493 ~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
++.|. +|++++|. ++......+ ...+|++|++++|. ++......+ ..+++|+.|++++|++..+
T Consensus 175 L~~l~l~L~ls~n~-l~~~~~~~~--------~~~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 175 MPLLNLSLDLSLNP-MNFIQPGAF--------KEIRLKELALDTNQ-LKSVPDGIF--DRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CTTCCEEEECCSSC-CCEECTTSS--------CSCCEEEEECCSSC-CSCCCTTTT--TTCCSCCEEECCSSCBCCC
T ss_pred ccccceeeecCCCc-ccccCcccc--------CCCcccEEECCCCc-eeecCHhHh--cccccccEEEccCCccccc
Confidence 33333 78888886 543211111 24578888888884 665433333 3578888888888888755
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=140.89 Aligned_cols=231 Identities=15% Similarity=0.105 Sum_probs=121.9
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHH--cCCCCcEEEEcCCCCCCHHHHHHHH-cCCCCccEEEccCCCCCCH----HHHHH
Q 007372 311 KGLESVRLGGFSKVSDAGFAAILL--SCHSLKKFEVRSASFLSDLAFHDLT-GVPCALVEVRLLWCRLITS----ETVKK 383 (606)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~l~~----~~~~~ 383 (606)
..++.+.+.++ .+++..+..+.. .+++|++|+++++.... .....+. ..+++|++|+++++. ++. .....
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITG-TMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBS-CCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHH
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEecc-chhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHH
Confidence 46788888887 667666654433 34678888888775211 1001111 445677777777765 332 11123
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChH-HHHH--HHhcCCCccEEEccCCCCCCH--HHHHH
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS-GLSI--LAQGNLPIMNLCLRGCKRVTD--KGISH 458 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~--l~~~~~~L~~L~l~~~~~~~~--~~~~~ 458 (606)
+..+++|++|++++| .++......+..+++|++|++++|.+... ++.. ....+++|++|++++|. ++. .....
T Consensus 141 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~ 218 (310)
T 4glp_A 141 QWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA 218 (310)
T ss_dssp TTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH
T ss_pred hhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH
Confidence 345677777777776 55544445556667777777777765443 2211 11245667777777665 432 11111
Q ss_pred HHhhcCCCCCCCCEEecCCCCCCCHHHHHHHH--HcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCC
Q 007372 459 LLCVGGTISQSLTTLDLGYMPGISDDGILTIA--AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 536 (606)
Q Consensus 459 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c 536 (606)
+. ..+++|++|++++| .+++.....+. ..+++|++|++++|. ++. ++.. -.++|++|++++|
T Consensus 219 l~----~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~-----lp~~-----~~~~L~~L~Ls~N 282 (310)
T 4glp_A 219 LA----AAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG-LEQ-----VPKG-----LPAKLRVLDLSSN 282 (310)
T ss_dssp HH----HHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC-CCS-----CCSC-----CCSCCSCEECCSC
T ss_pred HH----hcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC-CCc-----hhhh-----hcCCCCEEECCCC
Confidence 21 13566777777666 44432111111 012566666666665 441 1111 1246666666666
Q ss_pred CCCCHHHHHHhhcCCCCCceEEEeeceeccC
Q 007372 537 IGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 567 (606)
Q Consensus 537 ~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 567 (606)
.++.... + ..+++|+.|++++|++.+
T Consensus 283 -~l~~~~~--~--~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 283 -RLNRAPQ--P--DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -CCCSCCC--T--TSCCCCSCEECSSTTTSC
T ss_pred -cCCCCch--h--hhCCCccEEECcCCCCCC
Confidence 3543211 1 345666666666666543
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=4.9e-15 Score=143.28 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=126.9
Q ss_pred CCccEEEeccccccCCCCccccChHHHHHHHh--cCCCccEEEcCCCCCCCHHHHHHHH-HcCCCCcEEEEcCCCCCCH-
Q 007372 277 HHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSE--GCKGLESVRLGGFSKVSDAGFAAIL-LSCHSLKKFEVRSASFLSD- 352 (606)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~- 352 (606)
..++.+.+.++. +++..+..+.. .+++|++|+++++ .++......++ ..+++|++|+++++.....
T Consensus 64 ~~l~~l~l~~~~---------~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 64 LRVRRLTVGAAQ---------VPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCCCEEEECSCC---------CBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred cceeEEEEeCCc---------CCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchh
Confidence 356777776653 55555444322 2356777777776 33321111111 3567777777777653221
Q ss_pred --HHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHH---cccCCCCCCEEEccCCCCCh
Q 007372 353 --LAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLR---SISCLRKLTALNLTGADITD 427 (606)
Q Consensus 353 --~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~l~~~~~L~~L~l~~~~i~~ 427 (606)
.....+. .+++|++|++++|. +.......+..+++|++|++++|...++.++. .+..+++|++|++++|.++.
T Consensus 134 ~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 134 SWLAELQQW-LKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp SSHHHHHTT-BCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred hhhHHHHhh-hccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 1111222 56777888887776 44444445556777888888777323322221 12467777778888777763
Q ss_pred H--HHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCC
Q 007372 428 S--GLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 505 (606)
Q Consensus 428 ~--~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 505 (606)
. ....+...+++|++|++++|. +++.....+. ....+++|++|++++| .++.. ... ..++|++|++++|.
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~--~~~~~~~L~~L~Ls~N-~l~~l-p~~---~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAP--RCMWSSALNSLNLSFA-GLEQV-PKG---LPAKLRVLDLSSNR 283 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCS--SCCCCTTCCCEECCSS-CCCSC-CSC---CCSCCSCEECCSCC
T ss_pred hHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHH--hccCcCcCCEEECCCC-CCCch-hhh---hcCCCCEEECCCCc
Confidence 2 222334456778888887776 4432111111 0012367788888777 55521 111 12677788887776
Q ss_pred CCCHHHHHHHHhhCCCcccCCCCCEEeccCCC
Q 007372 506 YVTDASVEALARKQPDQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 506 ~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 537 (606)
++.. ..+ . .+++|+.|++++|+
T Consensus 284 -l~~~--~~~-~------~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 284 -LNRA--PQP-D------ELPEVDNLTLDGNP 305 (310)
T ss_dssp -CCSC--CCT-T------SCCCCSCEECSSTT
T ss_pred -CCCC--chh-h------hCCCccEEECcCCC
Confidence 5531 111 1 46777888887774
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=1.6e-13 Score=143.85 Aligned_cols=51 Identities=20% Similarity=0.140 Sum_probs=25.4
Q ss_pred ccCceecccCCCChhhhhhhhcCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccc
Q 007372 68 ALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELA 126 (606)
Q Consensus 68 ~L~~L~l~~~~l~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 126 (606)
+++.|+++++.++..+... .++|++|++++|. ++ . +...+++|++|+++.+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l--~~~L~~L~L~~N~-l~--~---lp~~l~~L~~L~Ls~N 91 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL--PAHITTLVIPDNN-LT--S---LPALPPELRTLEVSGN 91 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC--CTTCSEEEECSCC-CS--C---CCCCCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhh--CCCCcEEEecCCC-CC--C---CCCcCCCCCEEEcCCC
Confidence 4566666666555332211 2566666666552 22 1 1124556666666544
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=4.8e-15 Score=152.35 Aligned_cols=62 Identities=19% Similarity=0.074 Sum_probs=26.9
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHccc-CCCCCCEEEccCCCCC
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADIT 426 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~ 426 (606)
++|+.|++++|. ++......+..+++|+.|++++| .++......+. .+++|+.|++++|.++
T Consensus 120 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 120 QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccc
Confidence 444445444444 33322223334455555555554 34433333332 3445555555555444
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=5.2e-15 Score=152.04 Aligned_cols=245 Identities=15% Similarity=0.082 Sum_probs=166.1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCC
Q 007372 309 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR 388 (606)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 388 (606)
.+++|++|+++++ .++.... ..+..+++|+.|+++++....... ...+++|+.|++++|. ++. +...+
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~-----l~~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQE-----LLVGP 99 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEE-----EEECT
T ss_pred cCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCC-----CCCCC
Confidence 3458999999998 4543211 223578999999999886321111 4567899999999986 332 34458
Q ss_pred CCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCC
Q 007372 389 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ 468 (606)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 468 (606)
+|+.|++++| .++.... ..+++|+.|++++|.++......+ ..+++|+.|++++|. ++......+. ..++
T Consensus 100 ~L~~L~L~~N-~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~l~----~~l~ 169 (487)
T 3oja_A 100 SIETLHAANN-NISRVSC---SRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELA----ASSD 169 (487)
T ss_dssp TCCEEECCSS-CCCCEEE---CCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSC-CCEEEGGGGG----GGTT
T ss_pred CcCEEECcCC-cCCCCCc---cccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCC-CCCcChHHHh----hhCC
Confidence 9999999998 6654322 356889999999998876433222 347899999999987 6654444443 3578
Q ss_pred CCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhh
Q 007372 469 SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK 548 (606)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 548 (606)
+|+.|++++| .++.. ... ..+++|+.|++++|. ++.... .+. .+++|+.|++++| .++..+. .+
T Consensus 170 ~L~~L~Ls~N-~l~~~--~~~-~~l~~L~~L~Ls~N~-l~~~~~-~~~-------~l~~L~~L~Ls~N-~l~~lp~-~l- 233 (487)
T 3oja_A 170 TLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGP-EFQ-------SAAGVTWISLRNN-KLVLIEK-AL- 233 (487)
T ss_dssp TCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSSC-CCEECG-GGG-------GGTTCSEEECTTS-CCCEECT-TC-
T ss_pred cccEEecCCC-ccccc--ccc-ccCCCCCEEECCCCC-CCCCCH-hHc-------CCCCccEEEecCC-cCcccch-hh-
Confidence 9999999998 56543 111 147899999999997 664221 133 5889999999999 4664221 12
Q ss_pred cCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeec-------ccccccc
Q 007372 549 RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLD-------GCEIGCH 595 (606)
Q Consensus 549 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-------g~~~~~~ 595 (606)
..+++|+.|++++|++... .+..+....+.+. +.+. ++++.|.
T Consensus 234 -~~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~ 284 (487)
T 3oja_A 234 -RFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284 (487)
T ss_dssp -CCCTTCCEEECTTCCBCHH---HHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCS
T ss_pred -ccCCCCCEEEcCCCCCcCc---chHHHHHhCCCCcEEeccccccccCCCccccc
Confidence 3578999999999996522 3344444555555 4444 6666665
No 82
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.45 E-value=1.4e-13 Score=117.26 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=63.3
Q ss_pred CccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHc---CCCCcEEEecCCCCCCHHHHHHH
Q 007372 439 PIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDASVEAL 515 (606)
Q Consensus 439 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l 515 (606)
.|++|++++|. +++.++..+. .+++|++|++++|..++|.++..++.. +++|++|++++|..|||.++..+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 46666666665 6666665554 566666666666666666666666541 45667777776666777666666
Q ss_pred HhhCCCcccCCCCCEEeccCCCCCCHHHH--HHhhcCCCCCce
Q 007372 516 ARKQPDQEKSKQLRRLDLCNCIGLSVDSL--RWVKRPSFRGLH 556 (606)
Q Consensus 516 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~l~~~~~~~L~ 556 (606)
.. +++|++|++++|+.+++.+. ..+. ..+|+++
T Consensus 136 ~~-------~~~L~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~ 170 (176)
T 3e4g_A 136 HH-------FRNLKYLFLSDLPGVKEKEKIVQAFK-TSLPSLE 170 (176)
T ss_dssp GG-------CTTCCEEEEESCTTCCCHHHHHHHHH-HHCTTCE
T ss_pred hc-------CCCCCEEECCCCCCCCchHHHHHHHH-HHCCCcE
Confidence 53 66677777777766666442 2332 3455544
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=7.9e-14 Score=134.39 Aligned_cols=192 Identities=20% Similarity=0.187 Sum_probs=146.6
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+++|++|+++++. +... ..+..+++|+.|++++| .+++... +..+++|++|++++|.+++.. . ...+++|+
T Consensus 40 l~~L~~L~l~~~~-i~~l--~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~ 110 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTI--EGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS--A-IAGLQSIK 110 (308)
T ss_dssp HHTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG--G-GTTCTTCC
T ss_pred cCCcCEEEeeCCC-ccCc--hhhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCch--h-hcCCCCCC
Confidence 4799999999986 4442 34678999999999998 6665433 789999999999999887642 2 34589999
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCC
Q 007372 442 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPD 521 (606)
Q Consensus 442 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 521 (606)
+|++++|. +++.. .+. .+++|++|++++| .+++... + ..+++|+.|++++|. +++.. .+.
T Consensus 111 ~L~l~~n~-l~~~~--~l~-----~l~~L~~L~l~~n-~l~~~~~--l-~~l~~L~~L~l~~n~-l~~~~--~l~----- 170 (308)
T 1h6u_A 111 TLDLTSTQ-ITDVT--PLA-----GLSNLQVLYLDLN-QITNISP--L-AGLTNLQYLSIGNAQ-VSDLT--PLA----- 170 (308)
T ss_dssp EEECTTSC-CCCCG--GGT-----TCTTCCEEECCSS-CCCCCGG--G-GGCTTCCEEECCSSC-CCCCG--GGT-----
T ss_pred EEECCCCC-CCCch--hhc-----CCCCCCEEECCCC-ccCcCcc--c-cCCCCccEEEccCCc-CCCCh--hhc-----
Confidence 99999997 55422 233 7899999999998 6654332 3 578999999999997 66522 233
Q ss_pred cccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 522 QEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 522 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
.+++|++|++++| .++.... + ..+++|+.|++++|++.... .+ ...+.++ +++.+|.+.+.
T Consensus 171 --~l~~L~~L~l~~n-~l~~~~~--l--~~l~~L~~L~L~~N~l~~~~-----~l-~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 171 --NLSKLTTLKADDN-KISDISP--L--ASLPNLIEVHLKNNQISDVS-----PL-ANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp --TCTTCCEEECCSS-CCCCCGG--G--GGCTTCCEEECTTSCCCBCG-----GG-TTCTTCCEEEEEEEEEECC
T ss_pred --CCCCCCEEECCCC-ccCcChh--h--cCCCCCCEEEccCCccCccc-----cc-cCCCCCCEEEccCCeeecC
Confidence 5899999999999 4665332 3 36899999999999988762 23 4567777 99999988774
No 84
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=1.5e-15 Score=147.79 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=98.8
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHc---------ccCCCCCCEEEccCCCCChHHHHH
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRS---------ISCLRKLTALNLTGADITDSGLSI 432 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---------l~~~~~L~~L~l~~~~i~~~~~~~ 432 (606)
+++|++|++++|. +. .....+..+++|+.|++++|...+.. ... +..+++|++|++++|.++.. ..
T Consensus 126 l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~ 200 (328)
T 4fcg_A 126 FAGLETLTLARNP-LR-ALPASIASLNRLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PA 200 (328)
T ss_dssp GTTCSEEEEESCC-CC-CCCGGGGGCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CG
T ss_pred cCCCCEEECCCCc-cc-cCcHHHhcCcCCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcCcc--hH
Confidence 4555555555554 33 11223555667777777665322211 111 23477777777777766521 11
Q ss_pred HHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHH
Q 007372 433 LAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASV 512 (606)
Q Consensus 433 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~ 512 (606)
....+++|++|++++|. ++... ..+. .+++|++|++++|..... ....+ ..+++|++|++++|..++. ..
T Consensus 201 ~l~~l~~L~~L~L~~N~-l~~l~-~~l~-----~l~~L~~L~Ls~n~~~~~-~p~~~-~~l~~L~~L~L~~n~~~~~-~p 270 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSP-LSALG-PAIH-----HLPKLEELDLRGCTALRN-YPPIF-GGRAPLKRLILKDCSNLLT-LP 270 (328)
T ss_dssp GGGGCTTCCEEEEESSC-CCCCC-GGGG-----GCTTCCEEECTTCTTCCB-CCCCT-TCCCCCCEEECTTCTTCCB-CC
T ss_pred hhcCCCCCCEEEccCCC-CCcCc-hhhc-----cCCCCCEEECcCCcchhh-hHHHh-cCCCCCCEEECCCCCchhh-cc
Confidence 23346777777777776 33211 1122 567788888877733322 11112 3567788888887763221 11
Q ss_pred HHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceecc
Q 007372 513 EALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 513 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 566 (606)
..+. .+++|++|++++|..++..+ ..+ ..+++|+.+.+..+.+.
T Consensus 271 ~~~~-------~l~~L~~L~L~~n~~~~~iP-~~l--~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 LDIH-------RLTQLEKLDLRGCVNLSRLP-SLI--AQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTGG-------GCTTCCEEECTTCTTCCCCC-GGG--GGSCTTCEEECCGGGSC
T ss_pred hhhh-------cCCCCCEEeCCCCCchhhcc-HHH--hhccCceEEeCCHHHHH
Confidence 1222 57788888888885444322 233 25778888888876644
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.43 E-value=8.9e-15 Score=138.38 Aligned_cols=184 Identities=16% Similarity=0.110 Sum_probs=115.4
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccE
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 442 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 442 (606)
+++++|+++++. ++......+.++++|++|+++++ .++......+..+++|++|++++|.++..... ....+++|++
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIG-VFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCE
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHh-HcccccCCCE
Confidence 345566665554 33333334556778888888776 55544444456677888888887766543221 2234678888
Q ss_pred EEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCc
Q 007372 443 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 522 (606)
Q Consensus 443 L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 522 (606)
|++++|. ++......+ ..+++|++|++++| .++......+ ..+++|++|++++|. ++......+.
T Consensus 114 L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~------ 178 (270)
T 2o6q_A 114 LRLDRNQ-LKSLPPRVF-----DSLTKLTYLSLGYN-ELQSLPKGVF-DKLTSLKELRLYNNQ-LKRVPEGAFD------ 178 (270)
T ss_dssp EECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CSCCCTTTTT------
T ss_pred EECCCCc-cCeeCHHHh-----CcCcCCCEEECCCC-cCCccCHhHc-cCCcccceeEecCCc-CcEeChhHhc------
Confidence 8888776 443222222 25788888888887 5554322222 356888999998886 5542222222
Q ss_pred ccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 523 EKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 523 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.+++|++|++++| .++......+ ..+++|+.|++++|++..+
T Consensus 179 -~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 179 -KLTELKTLKLDNN-QLKRVPEGAF--DSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp -TCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSSCBCCS
T ss_pred -cCCCcCEEECCCC-cCCcCCHHHh--ccccCCCEEEecCCCeeCC
Confidence 5789999999998 4665433333 3578999999999997654
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.43 E-value=4.1e-14 Score=136.85 Aligned_cols=206 Identities=21% Similarity=0.195 Sum_probs=136.9
Q ss_pred CCCccEEEccCCCCCCHHHHHHh--cCCCCCcEEEccCCCCCChHHHHcccC-----CCCCCEEEccCCCCChHHHHHHH
Q 007372 362 PCALVEVRLLWCRLITSETVKKL--ASSRNLEVLDLGGCKSIADTCLRSISC-----LRKLTALNLTGADITDSGLSILA 434 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~i~~~~~~~l~ 434 (606)
+++|++|++++|. +++.....+ ..+++|++|++++| .++.. ...+.. .++|++|++++|.++......+
T Consensus 94 l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~- 169 (312)
T 1wwl_A 94 ISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNV-SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV- 169 (312)
T ss_dssp TSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESC-BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-
T ss_pred cCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCC-CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-
Confidence 3455555555543 332222222 67899999999998 66654 222332 3899999999998776433333
Q ss_pred hcCCCccEEEccCCCCCCHHHH-HHHHhhcCCCCCCCCEEecCCCCCCCH--HHHHHHHHcCCCCcEEEecCCCCCCHHH
Q 007372 435 QGNLPIMNLCLRGCKRVTDKGI-SHLLCVGGTISQSLTTLDLGYMPGISD--DGILTIAAAGIGIIDLCVRSCFYVTDAS 511 (606)
Q Consensus 435 ~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 511 (606)
..+++|++|++++|...+..++ ..+. ...+++|++|++++| .++. .....+...+++|++|++++|. +++..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 244 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALC---PLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAA 244 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSC---TTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHH---hccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCccc
Confidence 3589999999999973322222 2221 136899999999999 7773 2334455678999999999997 65422
Q ss_pred HHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeeccc
Q 007372 512 VEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGC 590 (606)
Q Consensus 512 ~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~ 590 (606)
..... ..+++|++|++++| .++. +...-.++|+.|++++|++... .. ....+.++ +++.||
T Consensus 245 ~~~~~------~~l~~L~~L~Ls~N-~l~~-----ip~~~~~~L~~L~Ls~N~l~~~-----p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 245 GAPSC------DWPSQLNSLNLSFT-GLKQ-----VPKGLPAKLSVLDLSYNRLDRN-----PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSCC------CCCTTCCEEECTTS-CCSS-----CCSSCCSEEEEEECCSSCCCSC-----CC-TTTSCEEEEEECTTC
T ss_pred chhhh------hhcCCCCEEECCCC-ccCh-----hhhhccCCceEEECCCCCCCCC-----hh-HhhCCCCCEEeccCC
Confidence 00001 14689999999999 4763 2211237999999999998865 12 34567787 999999
Q ss_pred cccc
Q 007372 591 EIGC 594 (606)
Q Consensus 591 ~~~~ 594 (606)
++..
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8764
No 87
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.42 E-value=4.2e-13 Score=114.25 Aligned_cols=104 Identities=21% Similarity=0.303 Sum_probs=68.8
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCC-CCChHHHHHHHhc---CCCccEEEccCCCCCCHHHHHHHHhhc
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQG---NLPIMNLCLRGCKRVTDKGISHLLCVG 463 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~ 463 (606)
..|+.||+++| .+++.++..+..|++|++|+|++| .++|.++..+... +++|++|++++|.++|+.++..+.
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~--- 136 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH--- 136 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG---
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh---
Confidence 35777777777 477777777777777777777777 5777777776652 346777777777667777766665
Q ss_pred CCCCCCCCEEecCCCCCCCHHH--HHHHHHcCCCCc
Q 007372 464 GTISQSLTTLDLGYMPGISDDG--ILTIAAAGIGII 497 (606)
Q Consensus 464 ~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~L~ 497 (606)
.+++|++|++++|+++++.+ ...+-+.+|+++
T Consensus 137 --~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 137 --HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp --GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred --cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 46667777777766666654 344445556554
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.41 E-value=1.1e-14 Score=138.41 Aligned_cols=207 Identities=18% Similarity=0.142 Sum_probs=98.1
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccE
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 442 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 442 (606)
++|++|+++++. ++......+.++++|++|++++| .++......+..+++|++|++++|.++......+ ..+++|++
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCE
T ss_pred CCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhh-cCCccccE
Confidence 356666666654 44333334455666666666665 4444333345556666666666665544322111 23566666
Q ss_pred EEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHH---HHHHHHhhC
Q 007372 443 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDA---SVEALARKQ 519 (606)
Q Consensus 443 L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~---~~~~l~~~~ 519 (606)
|++++|. ++......+ ..+++|++|++++| .++...+......+++|++|++++|. ++.. .+..+..
T Consensus 105 L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~-- 174 (276)
T 2z62_A 105 LVAVETN-LASLENFPI-----GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ-- 174 (276)
T ss_dssp EECTTSC-CCCSTTCCC-----TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHT--
T ss_pred EECCCCC-ccccCchhc-----ccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhh--
Confidence 6666654 222111111 24556666666665 33321111111345666666666664 4321 2222221
Q ss_pred CCcccCCCCC-EEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeecccccccc
Q 007372 520 PDQEKSKQLR-RLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 595 (606)
Q Consensus 520 ~~~~~~~~L~-~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~ 595 (606)
++.|. +|++++| .++......+. .++|+.|++++|++.... .......+.++ +++.||++.|.
T Consensus 175 -----L~~l~l~L~ls~n-~l~~~~~~~~~---~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 175 -----MPLLNLSLDLSLN-PMNFIQPGAFK---EIRLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp -----CTTCCEEEECCSS-CCCEECTTSSC---SCCEEEEECCSSCCSCCC----TTTTTTCCSCCEEECCSSCBCCC
T ss_pred -----ccccceeeecCCC-cccccCccccC---CCcccEEECCCCceeecC----HhHhcccccccEEEccCCccccc
Confidence 33333 5666666 24432222221 235666666666654331 11222344444 66666666665
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=1.5e-14 Score=137.90 Aligned_cols=202 Identities=14% Similarity=0.059 Sum_probs=117.5
Q ss_pred cCCCCcEEEEcCCCCCCHHHHHHHH-cCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCC
Q 007372 335 SCHSLKKFEVRSASFLSDLAFHDLT-GVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLR 413 (606)
Q Consensus 335 ~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 413 (606)
.+++++.+++.++.. + .+. ...++++.|+++++. ++......+..+++|+.|+++++ .++.. .....++
T Consensus 8 ~l~~l~~l~~~~~~l-~-----~ip~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~ 77 (290)
T 1p9a_G 8 KVASHLEVNCDKRNL-T-----ALPPDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKL--QVDGTLP 77 (290)
T ss_dssp CSTTCCEEECTTSCC-S-----SCCSCCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEE--ECCSCCT
T ss_pred ccCCccEEECCCCCC-C-----cCCCCCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcc--cCCCCCC
Confidence 456778887776531 1 111 123577888888776 55544455667788888888776 55542 2225677
Q ss_pred CCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcC
Q 007372 414 KLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG 493 (606)
Q Consensus 414 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 493 (606)
+|+.|++++|.++.. ......+++|++|++++|. ++......+ ..+++|++|++++| .++......+ ..+
T Consensus 78 ~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~l~~N~-l~~l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l 147 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNR-LTSLPLGAL-----RGLGELQELYLKGN-ELKTLPPGLL-TPT 147 (290)
T ss_dssp TCCEEECCSSCCSSC--CCCTTTCTTCCEEECCSSC-CCCCCSSTT-----TTCTTCCEEECTTS-CCCCCCTTTT-TTC
T ss_pred cCCEEECCCCcCCcC--chhhccCCCCCEEECCCCc-CcccCHHHH-----cCCCCCCEEECCCC-CCCccChhhc-ccc
Confidence 788888887766532 1122346777888887775 442221112 25677888888777 5543222212 345
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 494 IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
++|+.|++++|. ++......+. .+++|++|++++| .++..+...+ ..++|+.|++++|++..+
T Consensus 148 ~~L~~L~L~~N~-l~~l~~~~~~-------~l~~L~~L~L~~N-~l~~ip~~~~---~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 148 PKLEKLSLANNN-LTELPAGLLN-------GLENLDTLLLQEN-SLYTIPKGFF---GSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTCCEEECTTSC-CSCCCTTTTT-------TCTTCCEEECCSS-CCCCCCTTTT---TTCCCSEEECCSCCBCCS
T ss_pred cCCCEEECCCCc-CCccCHHHhc-------CcCCCCEEECCCC-cCCccChhhc---ccccCCeEEeCCCCccCc
Confidence 777777777776 5422111111 4677777777777 3553222222 345777777777776543
No 90
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.40 E-value=4.5e-14 Score=137.37 Aligned_cols=84 Identities=19% Similarity=0.078 Sum_probs=39.0
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+++|+.|++++|.. .......+..+++|+.|++++|. +.......+..+++|++|++++|.+.......+ ..+++|+
T Consensus 228 l~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~ 304 (328)
T 4fcg_A 228 LPKLEELDLRGCTA-LRNYPPIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANC 304 (328)
T ss_dssp CTTCCEEECTTCTT-CCBCCCCTTCCCCCCEEECTTCT-TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-GGSCTTC
T ss_pred CCCCCEEECcCCcc-hhhhHHHhcCCCCCCEEECCCCC-chhhcchhhhcCCCCCEEeCCCCCchhhccHHH-hhccCce
Confidence 34445555544431 11112234455666666666652 222222334556666666666654433222222 2356666
Q ss_pred EEEccCC
Q 007372 442 NLCLRGC 448 (606)
Q Consensus 442 ~L~l~~~ 448 (606)
.+.+..+
T Consensus 305 ~l~l~~~ 311 (328)
T 4fcg_A 305 IILVPPH 311 (328)
T ss_dssp EEECCGG
T ss_pred EEeCCHH
Confidence 6666543
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.38 E-value=2.2e-14 Score=135.64 Aligned_cols=184 Identities=15% Similarity=0.076 Sum_probs=133.2
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
+++++|+++++ .++......+..+++|++|++++|.++.... .....+++|++|++++|. ++......+ ..+
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-GIFKELKNLETLWVTDNK-LQALPIGVF-----DQL 108 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-TTTSSCTTCCEEECCSSC-CCCCCTTTT-----TTC
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeCh-hhhcCCCCCCEEECCCCc-CCcCCHhHc-----ccc
Confidence 67999999998 6776555678899999999999998764322 223458999999999987 543332222 368
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
++|++|++++| .++......+ ..+++|++|++++|. ++......+. .+++|++|++++| .++......+
T Consensus 109 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~~~~~~~ 177 (270)
T 2o6q_A 109 VNLAELRLDRN-QLKSLPPRVF-DSLTKLTYLSLGYNE-LQSLPKGVFD-------KLTSLKELRLYNN-QLKRVPEGAF 177 (270)
T ss_dssp SSCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTTTT
T ss_pred cCCCEEECCCC-ccCeeCHHHh-CcCcCCCEEECCCCc-CCccCHhHcc-------CCcccceeEecCC-cCcEeChhHh
Confidence 99999999998 5654333223 467999999999997 6543222222 5899999999999 4665443333
Q ss_pred hcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE-Eeeccccccccc
Q 007372 548 KRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 596 (606)
Q Consensus 548 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~~~~~ 596 (606)
..+++|+.|++++|++..... ......+.++ +++.||++.|..
T Consensus 178 --~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 178 --DKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp --TTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBCCSS
T ss_pred --ccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCCCeeCCC
Confidence 358999999999999876522 2223456666 999999999884
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.37 E-value=2.3e-14 Score=135.64 Aligned_cols=174 Identities=14% Similarity=0.062 Sum_probs=88.3
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+++|+.|++++|. +.+ +..+..+++|++|++++| .++......+..+++|++|++++|.++..... ....+++|+
T Consensus 62 l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 136 (272)
T 3rfs_A 62 LPNVRYLALGGNK-LHD--ISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDG-VFDKLTNLT 136 (272)
T ss_dssp CTTCCEEECTTSC-CCC--CGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCC
T ss_pred CCCCcEEECCCCC-CCC--chhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHH-HhccCCCCC
Confidence 4555555555544 332 124455666666666665 45543333455666666666666655432211 122356666
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCC
Q 007372 442 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPD 521 (606)
Q Consensus 442 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 521 (606)
+|++++|. ++......+ ..+++|++|++++| .++......+ ..+++|++|++++|. ++......+.
T Consensus 137 ~L~L~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~----- 202 (272)
T 3rfs_A 137 YLNLAHNQ-LQSLPKGVF-----DKLTNLTELDLSYN-QLQSLPEGVF-DKLTQLKDLRLYQNQ-LKSVPDGVFD----- 202 (272)
T ss_dssp EEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CSCCCTTTTT-----
T ss_pred EEECCCCc-cCccCHHHh-----ccCccCCEEECCCC-CcCccCHHHh-cCCccCCEEECCCCc-CCccCHHHHh-----
Confidence 66666664 332221111 24566666666666 4443221111 345666666666665 4432111122
Q ss_pred cccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceecc
Q 007372 522 QEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 522 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 566 (606)
.+++|++|++++|+ +. ..||+|+.|++..|.+.
T Consensus 203 --~l~~L~~L~l~~N~-~~---------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 203 --RLTSLQYIWLHDNP-WD---------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp --TCTTCCEEECCSSC-BC---------CCTTTTHHHHHHHHHTG
T ss_pred --CCcCCCEEEccCCC-cc---------ccCcHHHHHHHHHHhCC
Confidence 46667777776664 21 23566666666666543
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.37 E-value=6.8e-14 Score=132.39 Aligned_cols=180 Identities=17% Similarity=0.128 Sum_probs=127.7
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccE
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 442 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 442 (606)
++|+.|.+.++. +.. +..+..+++|+.|++++| .+++ +..+..+++|++|++++|.++...... ...+++|++
T Consensus 41 ~~L~~L~l~~~~-i~~--~~~l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 113 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKS--VQGIQYLPNVRYLALGGN-KLHD--ISALKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKE 113 (272)
T ss_dssp TTCCEEECTTSC-CCC--CTTGGGCTTCCEEECTTS-CCCC--CGGGTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCE
T ss_pred cceeeeeeCCCC-ccc--ccccccCCCCcEEECCCC-CCCC--chhhcCCCCCCEEECCCCccCccChhH-hcCCcCCCE
Confidence 566666666654 332 224667899999999998 6665 357789999999999999877533222 235799999
Q ss_pred EEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCc
Q 007372 443 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 522 (606)
Q Consensus 443 L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 522 (606)
|++++|. ++......+ ..+++|++|++++| .++......+ ..+++|++|++++|. ++......+.
T Consensus 114 L~L~~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~------ 178 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVF-----DKLTNLTYLNLAHN-QLQSLPKGVF-DKLTNLTELDLSYNQ-LQSLPEGVFD------ 178 (272)
T ss_dssp EECTTSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTTT------
T ss_pred EECCCCc-CCccCHHHh-----ccCCCCCEEECCCC-ccCccCHHHh-ccCccCCEEECCCCC-cCccCHHHhc------
Confidence 9999997 553222222 36889999999998 6664332222 467999999999997 6642222222
Q ss_pred ccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 523 EKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 523 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.+++|++|++++|. ++......+ ..+++|+.|++++|++...
T Consensus 179 -~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 179 -KLTQLKDLRLYQNQ-LKSVPDGVF--DRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp -TCTTCCEEECCSSC-CSCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred -CCccCCEEECCCCc-CCccCHHHH--hCCcCCCEEEccCCCcccc
Confidence 58999999999994 665433333 3689999999999998755
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=4.4e-13 Score=120.00 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=75.1
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
++|+.|+++++ .+++. ..+..+++|++|++++|.+++.. ....+++|++|++++|. +++.....+. .+
T Consensus 44 ~~L~~L~l~~n-~i~~l--~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~l~-----~l 111 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDL--TGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKD-VTSDKIPNLS-----GL 111 (197)
T ss_dssp HTCCEEEEESS-CCSCC--TTGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTT-CBGGGSCCCT-----TC
T ss_pred CCccEEeccCC-CccCh--HHHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCc-cCcccChhhc-----CC
Confidence 34444444444 33321 13344455555555555433321 11234555555555554 3332222222 45
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
++|++|++++| .+++..+..+ ..+++|++|++++|..+++. ..+. .+++|++|++++|. +++.. .+
T Consensus 112 ~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~--~~l~-------~l~~L~~L~l~~n~-i~~~~--~l 177 (197)
T 4ezg_A 112 TSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDI--MPLK-------TLPELKSLNIQFDG-VHDYR--GI 177 (197)
T ss_dssp TTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCC--GGGG-------GCSSCCEEECTTBC-CCCCT--TG
T ss_pred CCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCcccc--Hhhc-------CCCCCCEEECCCCC-CcChH--Hh
Confidence 66666666666 5554444444 35566666666666434432 1232 46777777777773 55422 22
Q ss_pred hcCCCCCceEEEeeceecc
Q 007372 548 KRPSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 548 ~~~~~~~L~~L~l~~~~~~ 566 (606)
..+|+|+.|++++|++.
T Consensus 178 --~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 178 --EDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp --GGCSSCCEEEECBC---
T ss_pred --ccCCCCCEEEeeCcccC
Confidence 35677788887777754
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=1.1e-12 Score=125.03 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=95.0
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhc
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG 463 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 463 (606)
+..+++|+.|++++| .+++.. .+..+++|+.|++++|.+++.. . ...+++|++|++++|. +++. ..+.
T Consensus 64 ~~~l~~L~~L~L~~n-~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L~~n~-i~~~--~~l~--- 131 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGN-KLTDIK--PLANLKNLGWLFLDENKVKDLS--S-LKDLKKLKSLSLEHNG-ISDI--NGLV--- 131 (291)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCCGG--G-GTTCTTCCEEECTTSC-CCCC--GGGG---
T ss_pred HhcCCCCCEEEccCC-ccCCCc--ccccCCCCCEEECCCCcCCCCh--h-hccCCCCCEEECCCCc-CCCC--hhhc---
Confidence 445666777777666 444422 2566677777777777665521 1 3346777777777775 4332 2223
Q ss_pred CCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHH
Q 007372 464 GTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDS 543 (606)
Q Consensus 464 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 543 (606)
.+++|+.|++++| .+++. ..+ ..+++|+.|++++|. +++... +. .+++|++|++++| .+++..
T Consensus 132 --~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L~~L~L~~N~-l~~~~~--l~-------~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 132 --HLPQLESLYLGNN-KITDI--TVL-SRLTKLDTLSLEDNQ-ISDIVP--LA-------GLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp --GCTTCCEEECCSS-CCCCC--GGG-GGCTTCSEEECCSSC-CCCCGG--GT-------TCTTCCEEECCSS-CCCBCG
T ss_pred --CCCCCCEEEccCC-cCCcc--hhh-ccCCCCCEEEccCCc-cccchh--hc-------CCCccCEEECCCC-cCCCCh
Confidence 5677788888777 55543 222 466788888888886 554321 33 5788888888888 466532
Q ss_pred HHHhhcCCCCCceEEEeeceeccCC
Q 007372 544 LRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 544 ~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.+ ..+++|+.|++++|++...
T Consensus 195 --~l--~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 195 --AL--AGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp --GG--TTCTTCSEEEEEEEEEECC
T ss_pred --hh--ccCCCCCEEECcCCcccCC
Confidence 23 3678888888888887655
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.33 E-value=1.6e-13 Score=130.82 Aligned_cols=200 Identities=14% Similarity=0.008 Sum_probs=105.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCC
Q 007372 309 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR 388 (606)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 388 (606)
.+++++.++++++ .++. +.. .-.++++.|+++++.. .... ......+++|+.|+++++. ++... ....++
T Consensus 8 ~l~~l~~l~~~~~-~l~~--ip~--~~~~~l~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~l~ 77 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTA--LPP--DLPKDTTILHLSENLL-YTFS-LATLMPYTRLTQLNLDRAE-LTKLQ--VDGTLP 77 (290)
T ss_dssp CSTTCCEEECTTS-CCSS--CCS--CCCTTCCEEECTTSCC-SEEE-GGGGTTCTTCCEEECTTSC-CCEEE--CCSCCT
T ss_pred ccCCccEEECCCC-CCCc--CCC--CCCCCCCEEEcCCCcC-CccC-HHHhhcCCCCCEEECCCCc-cCccc--CCCCCC
Confidence 3456777777665 3332 100 0125677777776642 1110 1123456777777777765 43321 124567
Q ss_pred CCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCC
Q 007372 389 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ 468 (606)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 468 (606)
+|+.|+++++ .++.. ...+..+++|+.|++++|.++...... ...+++|++|++++|. ++......+ ..++
T Consensus 78 ~L~~L~Ls~N-~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-----~~l~ 148 (290)
T 1p9a_G 78 VLGTLDLSHN-QLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNE-LKTLPPGLL-----TPTP 148 (290)
T ss_dssp TCCEEECCSS-CCSSC-CCCTTTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSC-CCCCCTTTT-----TTCT
T ss_pred cCCEEECCCC-cCCcC-chhhccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCC-CCccChhhc-----cccc
Confidence 7777777776 44421 123356677777777777665432111 2245677777777765 432211111 2566
Q ss_pred CCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCC
Q 007372 469 SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG 538 (606)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 538 (606)
+|+.|++++| +++...... ...+++|+.|++++|. ++. ++.... ..++|+.|++++|+.
T Consensus 149 ~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~N~-l~~-----ip~~~~---~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 149 KLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQENS-LYT-----IPKGFF---GSHLLPFAFLHGNPW 207 (290)
T ss_dssp TCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCSSC-CCC-----CCTTTT---TTCCCSEEECCSCCB
T ss_pred CCCEEECCCC-cCCccCHHH-hcCcCCCCEEECCCCc-CCc-----cChhhc---ccccCCeEEeCCCCc
Confidence 7777777776 454322111 1345677777777776 441 111111 355677777776653
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=7.8e-12 Score=111.82 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=39.5
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+++|++|++++|. +.. +..+..+++|++|++++| .+++.....+..+++|+.|++++|.+++.....+. .+++|+
T Consensus 65 l~~L~~L~l~~n~-~~~--~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~ 139 (197)
T 4ezg_A 65 AHNIKDLTINNIH-ATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVN 139 (197)
T ss_dssp CTTCSEEEEESCC-CSC--CGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT-TCSSCC
T ss_pred CCCCCEEEccCCC-CCc--chhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHh-hCCCCC
Confidence 3445555554442 222 123444555555555554 44444444455555555555555555543333322 245555
Q ss_pred EEEccCCC
Q 007372 442 NLCLRGCK 449 (606)
Q Consensus 442 ~L~l~~~~ 449 (606)
+|++++|.
T Consensus 140 ~L~L~~n~ 147 (197)
T 4ezg_A 140 SIDLSYNG 147 (197)
T ss_dssp EEECCSCT
T ss_pred EEEccCCC
Confidence 55555554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.24 E-value=6.5e-12 Score=119.78 Aligned_cols=146 Identities=28% Similarity=0.208 Sum_probs=94.5
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 361 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 361 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
.+++|++|++++|. +++... +..+++|+.|++++| .+++ +..+..+++|++|++++|.+++. .. ...+++|
T Consensus 66 ~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~-l~~l~~L 136 (291)
T 1h6t_A 66 YLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDEN-KVKD--LSSLKDLKKLKSLSLEHNGISDI--NG-LVHLPQL 136 (291)
T ss_dssp GCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCC--GGGGTTCTTCCEEECTTSCCCCC--GG-GGGCTTC
T ss_pred cCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCC-cCCC--ChhhccCCCCCEEECCCCcCCCC--hh-hcCCCCC
Confidence 35666666666665 333222 666777888888776 5554 34466777888888888776653 12 2346788
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCC
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 520 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 520 (606)
+.|++++|. ++.. ..+. .+++|++|++++| .+++... ...+++|++|++++|. +++. ..+.
T Consensus 137 ~~L~l~~n~-l~~~--~~l~-----~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~-i~~l--~~l~---- 197 (291)
T 1h6t_A 137 ESLYLGNNK-ITDI--TVLS-----RLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDL--RALA---- 197 (291)
T ss_dssp CEEECCSSC-CCCC--GGGG-----GCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBC--GGGT----
T ss_pred CEEEccCCc-CCcc--hhhc-----cCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCc-CCCC--hhhc----
Confidence 888888776 4432 2233 5778888888887 5554332 2467888888888886 6552 2233
Q ss_pred CcccCCCCCEEeccCCC
Q 007372 521 DQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 521 ~~~~~~~L~~L~l~~c~ 537 (606)
.+++|+.|++++|+
T Consensus 198 ---~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 198 ---GLKNLDVLELFSQE 211 (291)
T ss_dssp ---TCTTCSEEEEEEEE
T ss_pred ---cCCCCCEEECcCCc
Confidence 57888888888884
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.23 E-value=4.1e-12 Score=133.14 Aligned_cols=151 Identities=22% Similarity=0.195 Sum_probs=66.9
Q ss_pred cCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcC
Q 007372 385 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG 464 (606)
Q Consensus 385 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 464 (606)
..+++|+.|+|++| .+.+.. .+..+++|+.|+|++|.+++.. . ...+++|+.|++++|. ++.. ..+.
T Consensus 62 ~~l~~L~~L~Ls~N-~l~~~~--~l~~l~~L~~L~Ls~N~l~~l~--~-l~~l~~L~~L~Ls~N~-l~~l--~~l~---- 128 (605)
T 1m9s_A 62 QYLPNVTKLFLNGN-KLTDIK--PLTNLKNLGWLFLDENKIKDLS--S-LKDLKKLKSLSLEHNG-ISDI--NGLV---- 128 (605)
T ss_dssp GGCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCSSCCCCCT--T-STTCTTCCEEECTTSC-CCCC--GGGG----
T ss_pred ccCCCCCEEEeeCC-CCCCCh--hhccCCCCCEEECcCCCCCCCh--h-hccCCCCCEEEecCCC-CCCC--cccc----
Confidence 33444555555444 333211 1444445555555554443311 1 1234455555555554 2221 1122
Q ss_pred CCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHH
Q 007372 465 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 544 (606)
Q Consensus 465 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 544 (606)
.+++|+.|+|++| .+++. ..+ ..+++|+.|++++|. +++... +. .+++|++|++++| .+++.
T Consensus 129 -~l~~L~~L~Ls~N-~l~~l--~~l-~~l~~L~~L~Ls~N~-l~~~~~--l~-------~l~~L~~L~Ls~N-~i~~l-- 190 (605)
T 1m9s_A 129 -HLPQLESLYLGNN-KITDI--TVL-SRLTKLDTLSLEDNQ-ISDIVP--LA-------GLTKLQNLYLSKN-HISDL-- 190 (605)
T ss_dssp -GCTTCSEEECCSS-CCCCC--GGG-GSCTTCSEEECCSSC-CCCCGG--GT-------TCTTCCEEECCSS-CCCBC--
T ss_pred -CCCccCEEECCCC-ccCCc--hhh-cccCCCCEEECcCCc-CCCchh--hc-------cCCCCCEEECcCC-CCCCC--
Confidence 3455555555555 33332 112 344555555555554 333211 22 3556666666665 34432
Q ss_pred HHhhcCCCCCceEEEeeceeccCC
Q 007372 545 RWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 545 ~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
..+ ..+++|+.|++++|++...
T Consensus 191 ~~l--~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 RAL--AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGG--TTCTTCSEEECCSEEEECC
T ss_pred hHH--ccCCCCCEEEccCCcCcCC
Confidence 122 2455666666666655443
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.21 E-value=1.2e-12 Score=122.14 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=85.0
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
++++.|+++++ .++......+..+++|++|++++|.++...... ...+++|++|++++|. ++......+ ..+
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l 106 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQ-LASLPLGVF-----DHL 106 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSC-CCCCCTTTT-----TTC
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhH-hccCCcCCEEECCCCc-ccccChhHh-----ccc
Confidence 34555555554 444333334445555555555555444322111 1234566666666554 332211111 245
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
++|++|++++| .++......+ ..+++|++|++++|. ++......+. .+++|++|++++| .++......+
T Consensus 107 ~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~ 175 (251)
T 3m19_A 107 TQLDKLYLGGN-QLKSLPSGVF-DRLTKLKELRLNTNQ-LQSIPAGAFD-------KLTNLQTLSLSTN-QLQSVPHGAF 175 (251)
T ss_dssp TTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTTTT
T ss_pred CCCCEEEcCCC-cCCCcChhHh-ccCCcccEEECcCCc-CCccCHHHcC-------cCcCCCEEECCCC-cCCccCHHHH
Confidence 66777777666 4443221112 345777777777775 5432221222 4778888888888 4654333333
Q ss_pred hcCCCCCceEEEeeceeccCC
Q 007372 548 KRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 548 ~~~~~~~L~~L~l~~~~~~~~ 568 (606)
..+++|+.|++++|++...
T Consensus 176 --~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 --DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --TTCTTCCEEECCSCCBCTT
T ss_pred --hCCCCCCEEEeeCCceeCC
Confidence 3577888888888887654
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.21 E-value=3e-13 Score=125.40 Aligned_cols=179 Identities=10% Similarity=0.005 Sum_probs=88.5
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+++|++|+++++..++......+.++++|++|++++|..++......+..+++|++|++++|.++.. .. ...+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l--p~-~~~l~~L~ 130 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF--PD-LTKVYSTD 130 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC--CC-CTTCCBCC
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc--cc-cccccccc
Confidence 3445555554443233222223455666666666652245544444555666677777766655431 11 22345555
Q ss_pred ---EEEccCCCCCCHHHHHHHHhhcCCCCCCCC-EEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHh
Q 007372 442 ---NLCLRGCKRVTDKGISHLLCVGGTISQSLT-TLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 517 (606)
Q Consensus 442 ---~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 517 (606)
.|++++|..++......+ ..+++|+ +|++++| .++......+ .. ++|++|++++|..++......+.
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~-----~~l~~L~~~L~l~~n-~l~~i~~~~~-~~-~~L~~L~L~~n~~l~~i~~~~~~- 201 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAF-----QGLCNETLTLKLYNN-GFTSVQGYAF-NG-TKLDAVYLNKNKYLTVIDKDAFG- 201 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTT-----TTTBSSEEEEECCSC-CCCEECTTTT-TT-CEEEEEECTTCTTCCEECTTTTT-
T ss_pred cccEEECCCCcchhhcCcccc-----cchhcceeEEEcCCC-CCcccCHhhc-CC-CCCCEEEcCCCCCcccCCHHHhh-
Confidence 677766633443222212 2466677 7777666 4442221111 12 56777777666324422222222
Q ss_pred hCCCcccC-CCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeecee
Q 007372 518 KQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 518 ~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 564 (606)
.+ ++|++|++++|. ++..+ ...+++|+.|+++++.
T Consensus 202 ------~l~~~L~~L~l~~N~-l~~l~-----~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 202 ------GVYSGPSLLDVSQTS-VTALP-----SKGLEHLKELIARNTW 237 (239)
T ss_dssp ------TCSBCCSEEECTTCC-CCCCC-----CTTCTTCSEEECTTC-
T ss_pred ------ccccCCcEEECCCCc-cccCC-----hhHhccCceeeccCcc
Confidence 35 667777777663 44321 1235667777766654
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.19 E-value=2e-13 Score=126.61 Aligned_cols=184 Identities=13% Similarity=0.044 Sum_probs=129.0
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccC-CCCChHHHHHHHhcCCCcc
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTG-ADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~l~~~~~~L~ 441 (606)
++|+.|+++++. ++......+.++++|+.|++++|..++......+..+++|++|++++ |.++..... ....+++|+
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-SEECCTTCC
T ss_pred CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCC
Confidence 467777777765 55444445678899999999998437665556778999999999998 777753322 223589999
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCCCCCCC---EEecCCCCCCCHHHHHHHHHcCCCCc-EEEecCCCCCCHHHHHHHHh
Q 007372 442 NLCLRGCKRVTDKGISHLLCVGGTISQSLT---TLDLGYMPGISDDGILTIAAAGIGII-DLCVRSCFYVTDASVEALAR 517 (606)
Q Consensus 442 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~---~L~l~~~~~l~~~~~~~l~~~~~~L~-~L~l~~~~~l~~~~~~~l~~ 517 (606)
+|++++|. ++. +..+ ..+++|+ .|++++|+.++......+ ..+++|+ +|++++|. ++......+
T Consensus 109 ~L~l~~n~-l~~--lp~~-----~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n~-l~~i~~~~~-- 176 (239)
T 2xwt_C 109 FLGIFNTG-LKM--FPDL-----TKVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNNG-FTSVQGYAF-- 176 (239)
T ss_dssp EEEEEEEC-CCS--CCCC-----TTCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSCC-CCEECTTTT--
T ss_pred EEeCCCCC-Ccc--cccc-----ccccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCCC-CcccCHhhc--
Confidence 99999987 443 2222 3577777 999999866654332223 4678999 99999997 553211111
Q ss_pred hCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCC-CCceEEEeeceeccCC
Q 007372 518 KQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSF-RGLHWLGIGQTRLASK 568 (606)
Q Consensus 518 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~-~~L~~L~l~~~~~~~~ 568 (606)
..++|++|++++|+.++......+. .+ ++|+.|++++|++...
T Consensus 177 ------~~~~L~~L~L~~n~~l~~i~~~~~~--~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 177 ------NGTKLDAVYLNKNKYLTVIDKDAFG--GVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp ------TTCEEEEEECTTCTTCCEECTTTTT--TCSBCCSEEECTTCCCCCC
T ss_pred ------CCCCCCEEEcCCCCCcccCCHHHhh--ccccCCcEEECCCCccccC
Confidence 2378999999999547654443443 56 8999999999998765
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.16 E-value=2.9e-12 Score=119.55 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=96.1
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccE
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 442 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 442 (606)
++++.|+++++. +.......+.++++|++|++++| .++......+..+++|++|++++|.++..... ....+++|++
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLG-VFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCE
T ss_pred CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChh-HhcccCCCCE
Confidence 455666666654 44333344566777888888776 56654445566777888888888766643221 1234678888
Q ss_pred EEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCc
Q 007372 443 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 522 (606)
Q Consensus 443 L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 522 (606)
|++++|. ++......+ ..+++|++|++++| .++......+ ..+++|++|++++|. ++......+.
T Consensus 112 L~L~~N~-l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~------ 176 (251)
T 3m19_A 112 LYLGGNQ-LKSLPSGVF-----DRLTKLKELRLNTN-QLQSIPAGAF-DKLTNLQTLSLSTNQ-LQSVPHGAFD------ 176 (251)
T ss_dssp EECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CSCCCTTTTT------
T ss_pred EEcCCCc-CCCcChhHh-----ccCCcccEEECcCC-cCCccCHHHc-CcCcCCCEEECCCCc-CCccCHHHHh------
Confidence 8888775 443221112 25778888888887 5554322222 356888888888886 5532222222
Q ss_pred ccCCCCCEEeccCCC
Q 007372 523 EKSKQLRRLDLCNCI 537 (606)
Q Consensus 523 ~~~~~L~~L~l~~c~ 537 (606)
.+++|++|++++|+
T Consensus 177 -~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 -RLGKLQTITLFGNQ 190 (251)
T ss_dssp -TCTTCCEEECCSCC
T ss_pred -CCCCCCEEEeeCCc
Confidence 47888888888885
No 104
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.14 E-value=6.1e-10 Score=97.93 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=65.8
Q ss_pred cCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHc---CCCCcEEEecCCCCCCHHHH
Q 007372 436 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDASV 512 (606)
Q Consensus 436 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~ 512 (606)
..+.|++|++++|..+++.+...+..+. ...++|++|++++| .+++.+...+++. .+.|++|++++|. |++.+.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 3444555555444224444444333211 12455666666655 5555555444332 3566666666665 666666
Q ss_pred HHHHhhCCCcccCCCCCEEec--cCCCCCCHHHHHHhhc--CCCCCceEEEeeceeccCC
Q 007372 513 EALARKQPDQEKSKQLRRLDL--CNCIGLSVDSLRWVKR--PSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 513 ~~l~~~~~~~~~~~~L~~L~l--~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~~~~~~~ 568 (606)
..+...+. ..++|++|++ ++| .+++.+...+.. ...+.|++|++++|.+...
T Consensus 111 ~~l~~~L~---~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 111 LALVEALQ---SNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHGGG---GCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHH---hCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 66655444 4556666666 555 466655443321 2345666666666665433
No 105
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=2.3e-10 Score=111.52 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=108.7
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHh-cCCCccEEEccCCCC--CCHHHHHHHH
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQ-GNLPIMNLCLRGCKR--VTDKGISHLL 460 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~-~~~~L~~L~l~~~~~--~~~~~~~~l~ 460 (606)
+..+|+|+.|.++++..+. +..+ ..++|++|+|..|.+++.++..+.. .+|+|++|+++.+.+ ..+.++..+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 4567888888887762222 1222 3788999999888888888877764 588999998853211 1111121111
Q ss_pred hh-cCCCCCCCCEEecCCCCCCCHHHHHHHHH--cCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCC
Q 007372 461 CV-GGTISQSLTTLDLGYMPGISDDGILTIAA--AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 461 ~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 537 (606)
.. .+..+|+|+.|++.+| .+++.+...+++ .+|+|++|+++.|. +++.+...+...++ .+++|+.|+++.|
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~---~l~~L~~L~L~~n- 317 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVD---KIKHLKFINMKYN- 317 (362)
T ss_dssp GGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHH---HHTTCSEEECCSB-
T ss_pred HHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcc---cCCcceEEECCCC-
Confidence 10 1124678888888887 677666666654 35788888888776 88887777765322 4678888888888
Q ss_pred CCCHHHHHHhhcCCCCCceEEEeecee
Q 007372 538 GLSVDSLRWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 538 ~l~~~~~~~l~~~~~~~L~~L~l~~~~ 564 (606)
.+++.++..+.. .+ ...+++++++
T Consensus 318 ~i~d~~~~~l~~-al--g~~~~~~~~~ 341 (362)
T 2ra8_A 318 YLSDEMKKELQK-SL--PMKIDVSDSQ 341 (362)
T ss_dssp BCCHHHHHHHHH-HC--CSEEECCSBC
T ss_pred cCCHHHHHHHHH-Hc--CCEEEecCCc
Confidence 488877777752 11 3557777766
No 106
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=2e-10 Score=111.99 Aligned_cols=190 Identities=14% Similarity=0.125 Sum_probs=94.8
Q ss_pred hcCCCccEEEcCCCCC----C---CHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH
Q 007372 308 EGCKGLESVRLGGFSK----V---SDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET 380 (606)
Q Consensus 308 ~~~~~L~~L~l~~~~~----~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 380 (606)
..+++|+.|.+..... + ....+..++..+|+|+.|.++++..+.. ..+ ..++|++|++..|. ++...
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~~-l~~~~ 209 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISGG-LPDSV 209 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECSB-CCHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecCC-CChHH
Confidence 3567888888765311 1 0112445556677777777766521110 000 14556666665544 55555
Q ss_pred HHHhc--CCCCCcEEEccCCCC--CChHHHHcccCCCCCCEEEccCCCCChHHHHHHH--hcCCCccEEEccCCCCCCHH
Q 007372 381 VKKLA--SSRNLEVLDLGGCKS--IADTCLRSISCLRKLTALNLTGADITDSGLSILA--QGNLPIMNLCLRGCKRVTDK 454 (606)
Q Consensus 381 ~~~l~--~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~--~~~~~L~~L~l~~~~~~~~~ 454 (606)
+..+. .+|+|+.|+|+.+.. ..+..+..+ ..+. ..+|+|+.|.+.+|. +++.
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l---------------------~~~l~~~~~p~Lr~L~L~~~~-i~~~ 267 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF---------------------RPLFSKDRFPNLKWLGIVDAE-EQNV 267 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT---------------------GGGSCTTTCTTCCEEEEESCT-THHH
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHH---------------------HHHHhcCCCCCcCEEeCCCCC-CchH
Confidence 55444 455666665532100 011111111 0011 124555555555554 4433
Q ss_pred HHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHH---cCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEE
Q 007372 455 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRL 531 (606)
Q Consensus 455 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L 531 (606)
+...++. ...+++|++|+|+.| .+++.+...+.. .+++|++|++++|. |++.+++.+.. .+ ..++
T Consensus 268 ~~~~la~--a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~------al--g~~~ 335 (362)
T 2ra8_A 268 VVEMFLE--SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQK------SL--PMKI 335 (362)
T ss_dssp HHHHHHH--CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHH------HC--CSEE
T ss_pred HHHHHHh--CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHH------Hc--CCEE
Confidence 3333331 123566777777665 566666555542 35677777777775 77777777765 12 2456
Q ss_pred eccCCC
Q 007372 532 DLCNCI 537 (606)
Q Consensus 532 ~l~~c~ 537 (606)
++++..
T Consensus 336 ~~~~~~ 341 (362)
T 2ra8_A 336 DVSDSQ 341 (362)
T ss_dssp ECCSBC
T ss_pred EecCCc
Confidence 666553
No 107
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.12 E-value=4.7e-10 Score=98.66 Aligned_cols=128 Identities=19% Similarity=0.164 Sum_probs=79.7
Q ss_pred cccCCCCCCEEEccCC-CCChHHHHHHHh---cCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCH
Q 007372 408 SISCLRKLTALNLTGA-DITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 483 (606)
Q Consensus 408 ~l~~~~~L~~L~l~~~-~i~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 483 (606)
.+...+.|++|+|++| .+++.++..++. ..++|++|++++|. +++.+...+..+. ...++|++|++++| .+++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L-~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEML-KVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHH-HHCSSCCEEECCSS-CCCH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHH-HhCCCcCEEECcCC-cCCH
Confidence 3345666666666666 666666555443 34566667776665 6666655444211 13456777777777 6777
Q ss_pred HHHHHHHHcC---CCCcEEEe--cCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHH
Q 007372 484 DGILTIAAAG---IGIIDLCV--RSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDS 543 (606)
Q Consensus 484 ~~~~~l~~~~---~~L~~L~l--~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 543 (606)
.+...+++.+ +.|++|++ ++|. |++.+...+...+. ..++|++|++++| .+++.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~---~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLE---KNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHH---HCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHH---hCCCcCEEeccCC-CCChHH
Confidence 7766665543 56777877 6665 77777666665444 5677888888777 365544
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=3.3e-11 Score=126.21 Aligned_cols=168 Identities=18% Similarity=0.098 Sum_probs=84.9
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCC
Q 007372 309 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR 388 (606)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 388 (606)
.+++|+.|+++++ .+... .. +..+++|+.|+++++....... ...+++|+.|++++|. +.. +..+..++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~--l~~l~~l~ 109 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK-IKD--LSSLKDLK 109 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC--TT-GGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCC--CTTSTTCT
T ss_pred cCCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC-CCC--ChhhccCC
Confidence 4466777777766 33321 11 3356677777776654211111 3345666666666654 332 12344556
Q ss_pred CCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCC
Q 007372 389 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ 468 (606)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 468 (606)
+|+.|+|++| .+.+ +..+..+++|+.|+|++|.+++. .....+++|+.|++++|. +++... +. .++
T Consensus 110 ~L~~L~Ls~N-~l~~--l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~--l~-----~l~ 175 (605)
T 1m9s_A 110 KLKSLSLEHN-GISD--INGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP--LA-----GLT 175 (605)
T ss_dssp TCCEEECTTS-CCCC--CGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSC-CCCCGG--GT-----TCT
T ss_pred CCCEEEecCC-CCCC--CccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCc-CCCchh--hc-----cCC
Confidence 6666666665 4443 23455556666666666655543 122245566666666654 332211 22 455
Q ss_pred CCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCC
Q 007372 469 SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 505 (606)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 505 (606)
+|+.|+|++| .+++. ..+ ..+++|+.|++++|.
T Consensus 176 ~L~~L~Ls~N-~i~~l--~~l-~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 176 KLQNLYLSKN-HISDL--RAL-AGLKNLDVLELFSQE 208 (605)
T ss_dssp TCCEEECCSS-CCCBC--GGG-TTCTTCSEEECCSEE
T ss_pred CCCEEECcCC-CCCCC--hHH-ccCCCCCEEEccCCc
Confidence 6666666655 44432 122 345556666665554
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.07 E-value=6e-11 Score=111.14 Aligned_cols=149 Identities=13% Similarity=0.188 Sum_probs=84.9
Q ss_pred CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCC
Q 007372 386 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGT 465 (606)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 465 (606)
.+++|+.|++++| .+++. ..+..+++|+.|++++|.+++... ...+++|+.|++++|. ++. +..+.
T Consensus 39 ~l~~L~~L~l~~n-~i~~l--~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~-l~~--l~~~~----- 104 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSL--AGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR-LKN--LNGIP----- 104 (263)
T ss_dssp HHTTCSEEECTTS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC-CSC--CTTCC-----
T ss_pred hcCcCcEEECcCC-Ccccc--hHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc-cCC--cCccc-----
Confidence 3455666666655 44432 244556666666666665554322 3345666666666665 332 11111
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHH
Q 007372 466 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 545 (606)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 545 (606)
. ++|++|++++| .+++. ..+ ..+++|++|++++|. +++. ..+. .+++|++|++++| .+++. .
T Consensus 105 ~-~~L~~L~L~~N-~l~~~--~~l-~~l~~L~~L~Ls~N~-i~~~--~~l~-------~l~~L~~L~L~~N-~i~~~--~ 166 (263)
T 1xeu_A 105 S-ACLSRLFLDNN-ELRDT--DSL-IHLKNLEILSIRNNK-LKSI--VMLG-------FLSKLEVLDLHGN-EITNT--G 166 (263)
T ss_dssp C-SSCCEEECCSS-CCSBS--GGG-TTCTTCCEEECTTSC-CCBC--GGGG-------GCTTCCEEECTTS-CCCBC--T
T ss_pred c-CcccEEEccCC-ccCCC--hhh-cCcccccEEECCCCc-CCCC--hHHc-------cCCCCCEEECCCC-cCcch--H
Confidence 2 66777777776 55442 122 356777777777776 5542 2233 4777888888877 35554 2
Q ss_pred HhhcCCCCCceEEEeeceeccCC
Q 007372 546 WVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 546 ~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.+ ..+++|+.|++++|++...
T Consensus 167 ~l--~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GL--TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TS--TTCCCCCEEEEEEEEEECC
T ss_pred Hh--ccCCCCCEEeCCCCcccCC
Confidence 22 3577888888888877654
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=2e-10 Score=97.51 Aligned_cols=11 Identities=18% Similarity=-0.003 Sum_probs=4.6
Q ss_pred CCccEEEccCC
Q 007372 363 CALVEVRLLWC 373 (606)
Q Consensus 363 ~~L~~L~l~~~ 373 (606)
++|+.|++++|
T Consensus 17 ~~l~~L~l~~n 27 (149)
T 2je0_A 17 SDVKELVLDNS 27 (149)
T ss_dssp GGCSEEECTTC
T ss_pred ccCeEEEccCC
Confidence 33444444443
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=4e-10 Score=95.59 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=78.0
Q ss_pred CCCCcEEEccCCCCCChHH-HHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCC
Q 007372 387 SRNLEVLDLGGCKSIADTC-LRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGT 465 (606)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 465 (606)
.++|+.|++++| .+++.. ...+..+++|+.|++++|.+++. .....+++|++|++++|. ++.. +.... .
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~----~ 85 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLA----E 85 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHH----H
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHh----h
Confidence 466777777776 555222 23345677777777777766654 223356777777777776 4432 11222 1
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHH---HHHHhhCCCcccCCCCCEEeccC
Q 007372 466 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASV---EALARKQPDQEKSKQLRRLDLCN 535 (606)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~---~~l~~~~~~~~~~~~L~~L~l~~ 535 (606)
.+++|++|++++| .+++.........+++|++|++++|. +++... ..+. .+++|++|++++
T Consensus 86 ~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-------~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFK-------LLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHH-------HCTTCCEETTBC
T ss_pred hCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHH-------HCCCcccccCCC
Confidence 3677888888777 56654322222567788888888776 544322 3344 477888887753
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.99 E-value=3.8e-11 Score=124.30 Aligned_cols=175 Identities=11% Similarity=0.058 Sum_probs=103.7
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccE
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 442 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 442 (606)
++|+.|++++|. ++... ..+++|+.|++++| .++. +..+.. +|++|++++|.++... . .+++|+.
T Consensus 80 ~~L~~L~Ls~N~-l~~ip----~~l~~L~~L~Ls~N-~l~~--ip~l~~--~L~~L~Ls~N~l~~lp--~---~l~~L~~ 144 (571)
T 3cvr_A 80 PQITVLEITQNA-LISLP----ELPASLEYLDACDN-RLST--LPELPA--SLKHLDVDNNQLTMLP--E---LPALLEY 144 (571)
T ss_dssp TTCSEEECCSSC-CSCCC----CCCTTCCEEECCSS-CCSC--CCCCCT--TCCEEECCSSCCSCCC--C---CCTTCCE
T ss_pred CCCCEEECcCCC-Ccccc----cccCCCCEEEccCC-CCCC--cchhhc--CCCEEECCCCcCCCCC--C---cCccccE
Confidence 567777777765 44211 34678888888777 5554 222332 7888888888766521 1 4678888
Q ss_pred EEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCc
Q 007372 443 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 522 (606)
Q Consensus 443 L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 522 (606)
|++++|. ++. +. ..+++|+.|++++| .++..+. +. ++|+.|++++|. |+. +..+...+ .
T Consensus 145 L~Ls~N~-l~~-----lp----~~l~~L~~L~Ls~N-~L~~lp~--l~---~~L~~L~Ls~N~-L~~--lp~~~~~L--~ 203 (571)
T 3cvr_A 145 INADNNQ-LTM-----LP----ELPTSLEVLSVRNN-QLTFLPE--LP---ESLEALDVSTNL-LES--LPAVPVRN--H 203 (571)
T ss_dssp EECCSSC-CSC-----CC----CCCTTCCEEECCSS-CCSCCCC--CC---TTCCEEECCSSC-CSS--CCCCC------
T ss_pred EeCCCCc-cCc-----CC----CcCCCcCEEECCCC-CCCCcch--hh---CCCCEEECcCCC-CCc--hhhHHHhh--h
Confidence 8888876 432 12 13578888888887 5544211 21 788888888886 552 11111000 0
Q ss_pred ccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHh
Q 007372 523 EKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIH 577 (606)
Q Consensus 523 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 577 (606)
...+.|+.|++++| .++..+.. +. .+++|+.|++++|++....+..+..+.
T Consensus 204 ~~~~~L~~L~Ls~N-~l~~lp~~-l~--~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 204 HSEETEIFFRCREN-RITHIPEN-IL--SLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ----CCEEEECCSS-CCCCCCGG-GG--GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred cccccceEEecCCC-cceecCHH-Hh--cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 01233489999988 46653322 22 378899999999987765455555543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.94 E-value=2.7e-10 Score=106.74 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=70.7
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhc
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG 463 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 463 (606)
+..+++|+.|++++| .+++... +..+++|+.|++++|.+++.. .+. . ++|+.|++++|. +++. ..+.
T Consensus 59 l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~--~~~-~-~~L~~L~L~~N~-l~~~--~~l~--- 125 (263)
T 1xeu_A 59 MQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLN--GIP-S-ACLSRLFLDNNE-LRDT--DSLI--- 125 (263)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCT--TCC-C-SSCCEEECCSSC-CSBS--GGGT---
T ss_pred HhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcC--ccc-c-CcccEEEccCCc-cCCC--hhhc---
Confidence 445566666666665 4444322 556666666666666555421 111 1 567777777665 4432 1222
Q ss_pred CCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCC
Q 007372 464 GTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 464 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 537 (606)
.+++|+.|++++| .+++.. .+ ..+++|+.|++++|. +++. ..+. .+++|+.|++++|+
T Consensus 126 --~l~~L~~L~Ls~N-~i~~~~--~l-~~l~~L~~L~L~~N~-i~~~--~~l~-------~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 126 --HLKNLEILSIRNN-KLKSIV--ML-GFLSKLEVLDLHGNE-ITNT--GGLT-------RLKKVNWIDLTGQK 183 (263)
T ss_dssp --TCTTCCEEECTTS-CCCBCG--GG-GGCTTCCEEECTTSC-CCBC--TTST-------TCCCCCEEEEEEEE
T ss_pred --CcccccEEECCCC-cCCCCh--HH-ccCCCCCEEECCCCc-Ccch--HHhc-------cCCCCCEEeCCCCc
Confidence 5667777777776 555431 22 356777777777776 5543 2222 46777777777773
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.92 E-value=4e-11 Score=108.27 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=81.7
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
++|++|+++++ .++......+..+++|++|++++|.++..... ....+++|++|++++|. ++......+ ..+
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l 99 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQ-LQSLPNGVF-----DKL 99 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-----TTC
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCc-CCccCHhHh-----cCc
Confidence 45666666655 44433333345566666666666655432111 12235666666666664 332111111 246
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
++|++|++++| .++......+ ..+++|++|++++|. ++......+. .+++|++|++++|+ +.
T Consensus 100 ~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~~~~~-------~l~~L~~L~l~~N~-~~------- 161 (208)
T 2o6s_A 100 TQLKELALNTN-QLQSLPDGVF-DKLTQLKDLRLYQNQ-LKSVPDGVFD-------RLTSLQYIWLHDNP-WD------- 161 (208)
T ss_dssp TTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CSCCCTTTTT-------TCTTCCEEECCSCC-BC-------
T ss_pred cCCCEEEcCCC-cCcccCHhHh-ccCCcCCEEECCCCc-cceeCHHHhc-------cCCCccEEEecCCC-ee-------
Confidence 67777777766 4443221111 345777777777775 4432111122 46778888888774 21
Q ss_pred hcCCCCCceEEEeeceeccCC
Q 007372 548 KRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 548 ~~~~~~~L~~L~l~~~~~~~~ 568 (606)
..+++|+.|+++.|.+...
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTT
T ss_pred --cCCCCHHHHHHHHHhCCce
Confidence 3467777777777776654
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.91 E-value=3.2e-10 Score=98.43 Aligned_cols=105 Identities=28% Similarity=0.287 Sum_probs=53.1
Q ss_pred CCccEEEccCCCCCCH-HHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 363 CALVEVRLLWCRLITS-ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
++|++|++++|. +++ .....+..+++|+.|++++| .+++. ..+..+++|+.|++++|.+++. +......+++|+
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence 455555555544 321 11111344566667777666 45443 4555666666677766665542 222233356666
Q ss_pred EEEccCCCCCCHH-HHHHHHhhcCCCCCCCCEEecCCC
Q 007372 442 NLCLRGCKRVTDK-GISHLLCVGGTISQSLTTLDLGYM 478 (606)
Q Consensus 442 ~L~l~~~~~~~~~-~~~~l~~~~~~~~~~L~~L~l~~~ 478 (606)
.|++++|. +++. .+..+. .+++|++|++++|
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~-----~l~~L~~L~l~~N 130 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLK-----KLECLKSLDLFNC 130 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGS-----SCSCCCEEECCSS
T ss_pred EEeccCCc-cCcchhHHHHh-----cCCCCCEEEeeCC
Confidence 66666664 4332 112222 4555666666555
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.91 E-value=7.2e-11 Score=106.62 Aligned_cols=148 Identities=14% Similarity=0.000 Sum_probs=83.4
Q ss_pred CCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccE
Q 007372 363 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 442 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 442 (606)
++|++|+++++. ++......+..+++|++|+++++ .++......+..+++|++|++++|.++..... ....+++|++
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG-VFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCE
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHh-HhcCccCCCE
Confidence 345555555554 33322233455677777777766 55543334455677777777777765532211 1234677777
Q ss_pred EEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCc
Q 007372 443 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 522 (606)
Q Consensus 443 L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 522 (606)
|++++|. ++......+ ..+++|++|++++| .++......+ ..+++|++|++++|+ +. .
T Consensus 105 L~L~~N~-l~~~~~~~~-----~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~-~~--------~----- 162 (208)
T 2o6s_A 105 LALNTNQ-LQSLPDGVF-----DKLTQLKDLRLYQN-QLKSVPDGVF-DRLTSLQYIWLHDNP-WD--------C----- 162 (208)
T ss_dssp EECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSCC-BC--------C-----
T ss_pred EEcCCCc-CcccCHhHh-----ccCCcCCEEECCCC-ccceeCHHHh-ccCCCccEEEecCCC-ee--------c-----
Confidence 7777765 432221112 25677888888777 4543222112 356788888888776 22 1
Q ss_pred ccCCCCCEEeccCC
Q 007372 523 EKSKQLRRLDLCNC 536 (606)
Q Consensus 523 ~~~~~L~~L~l~~c 536 (606)
.+++|+.|+++.+
T Consensus 163 -~~~~l~~L~~~~n 175 (208)
T 2o6s_A 163 -TCPGIRYLSEWIN 175 (208)
T ss_dssp -CTTTTHHHHHHHH
T ss_pred -CCCCHHHHHHHHH
Confidence 3666777776665
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=6.4e-11 Score=102.88 Aligned_cols=89 Identities=21% Similarity=0.159 Sum_probs=45.7
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHH-HHHHHhhCCCcccCCCCCEEeccCCCCCCHHHH
Q 007372 466 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDAS-VEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 544 (606)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 544 (606)
.+++|++|++++| .++.. +......+++|+.|++++|. +++.. +..+. .+++|++|++++|. ++....
T Consensus 69 ~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~-------~l~~L~~L~l~~N~-l~~~~~ 137 (168)
T 2ell_A 69 KLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK-------KLECLKSLDLFNCE-VTNLND 137 (168)
T ss_dssp CCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS-------SCSCCCEEECCSSG-GGTSTT
T ss_pred cCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh-------cCCCCCEEEeeCCc-CcchHH
Confidence 4555666666555 33321 22222345666666666665 44421 12222 46677777777763 443222
Q ss_pred ---HHhhcCCCCCceEEEeeceeccC
Q 007372 545 ---RWVKRPSFRGLHWLGIGQTRLAS 567 (606)
Q Consensus 545 ---~~l~~~~~~~L~~L~l~~~~~~~ 567 (606)
..+ ..+|+|+.|++++|.+..
T Consensus 138 ~~~~~~--~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 138 YRESVF--KLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHHH--TTCSSCCEETTEETTSCB
T ss_pred HHHHHH--HhCccCcEecCCCCChhh
Confidence 122 246677777777776543
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.89 E-value=1.3e-10 Score=114.62 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=38.8
Q ss_pred CCccEEEccCCCCCCHHHHHHhc-CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCcc
Q 007372 363 CALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 441 (606)
Q Consensus 363 ~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 441 (606)
+.++.|+++++. ++......+. .+++|+.|++++| .++......+..+++|++|+|++|.++..... ....+++|+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF-LFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHH-HhCCCcCCC
Confidence 345556665554 3333333333 4555555555554 44443333444555555555555544432111 112244555
Q ss_pred EEEccCCC
Q 007372 442 NLCLRGCK 449 (606)
Q Consensus 442 ~L~l~~~~ 449 (606)
.|++++|.
T Consensus 116 ~L~L~~N~ 123 (361)
T 2xot_A 116 VLLLYNNH 123 (361)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 55555544
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.89 E-value=1.6e-10 Score=113.90 Aligned_cols=160 Identities=15% Similarity=0.057 Sum_probs=98.6
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCC
Q 007372 337 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 416 (606)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 416 (606)
+.++.|+++++. ++......+...+++|+.|+++++. +.......+.++++|+.|+|++| .++......+..+++|+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCC
Confidence 468888888864 2221111111257888888888876 55544445667888888888887 66655445567788888
Q ss_pred EEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCC-
Q 007372 417 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG- 495 (606)
Q Consensus 417 ~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~- 495 (606)
.|+|++|.++...... ...+++|+.|++++|. ++......+. ....+++|+.|++++| .++......+ ..++.
T Consensus 116 ~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~--~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~~ 189 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIK--DGNKLPKLMLLDLSSN-KLKKLPLTDL-QKLPAW 189 (361)
T ss_dssp EEECCSSCCCEECTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC------CTTCCEEECCSS-CCCCCCHHHH-HHSCHH
T ss_pred EEECCCCcccEECHHH-hCCcccCCEEECCCCc-CCeeCHHHhc--CcccCCcCCEEECCCC-CCCccCHHHh-hhccHh
Confidence 8888888776532222 2346788888888876 4432221110 0014678888888877 5554433333 24454
Q ss_pred -CcEEEecCCC
Q 007372 496 -IIDLCVRSCF 505 (606)
Q Consensus 496 -L~~L~l~~~~ 505 (606)
|+.|++++|+
T Consensus 190 ~l~~l~l~~N~ 200 (361)
T 2xot_A 190 VKNGLYLHNNP 200 (361)
T ss_dssp HHTTEECCSSC
T ss_pred hcceEEecCCC
Confidence 4677777776
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.85 E-value=1.2e-10 Score=105.99 Aligned_cols=135 Identities=12% Similarity=0.069 Sum_probs=72.9
Q ss_pred CCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCC
Q 007372 415 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 494 (606)
Q Consensus 415 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 494 (606)
++.|++++|.++..........+++|++|++++|. ++......+ ..+++|++|++++| .++......+ ..++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~ 105 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAF-----EGASGVNEILLTSN-RLENVQHKMF-KGLE 105 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTT-----TTCTTCCEEECCSS-CCCCCCGGGG-TTCS
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHh-----CCCCCCCEEECCCC-ccCccCHhHh-cCCc
Confidence 44555555544432111112234555555555554 332221112 24566777777666 4443222222 3567
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 495 GIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 495 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
+|++|++++|. ++......+. .+++|++|++++| .++......+. .+++|+.|++++|++..+
T Consensus 106 ~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 106 SLKTLMLRSNR-ITCVGNDSFI-------GLSSVRLLSLYDN-QITTVAPGAFD--TLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCEEECTTSC-CCCBCTTSST-------TCTTCSEEECTTS-CCCCBCTTTTT--TCTTCCEEECCSCCEECS
T ss_pred CCCEEECCCCc-CCeECHhHcC-------CCccCCEEECCCC-cCCEECHHHhc--CCCCCCEEEecCcCCcCC
Confidence 77777777776 4432222222 4778888888888 46654333333 578888899988888755
No 121
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.85 E-value=1.9e-09 Score=72.25 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=35.6
Q ss_pred CCCchhhhHHHHHHhcCchhhhhhHHhhhHHHHhhh-ccccCCCC
Q 007372 1 METVPSAVLNKEILGRLDIEALCSLACVNRALRFSV-ESQALPSL 44 (606)
Q Consensus 1 i~~LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~-~~~~~~~l 44 (606)
+..||+|++. +||+||+.+|++++++|||+|+.++ ....|+.+
T Consensus 9 ~~~LP~eil~-~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 9 WDSLPDELLL-GIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp CCSSCHHHHH-HHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred HHHCCHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4689999999 7999999999999999999999887 34456543
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.84 E-value=4.6e-10 Score=102.02 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=20.1
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCC
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 426 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 426 (606)
+..+++|+.|++++| .++......+..+++|++|++++|.++
T Consensus 52 ~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp STTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred hhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 334455555555554 444333334444555555555555443
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.83 E-value=5.8e-10 Score=102.10 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=57.9
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHH
Q 007372 466 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 545 (606)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 545 (606)
.+++|+.|++++| .++......+ ..+++|++|++++|. ++.. ...+. .+++|++|++++| .++.....
T Consensus 86 ~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~Ls~N~-l~~l-p~~~~-------~l~~L~~L~L~~N-~l~~~~~~ 153 (229)
T 3e6j_A 86 SLTQLTVLDLGTN-QLTVLPSAVF-DRLVHLKELFMCCNK-LTEL-PRGIE-------RLTHLTHLALDQN-QLKSIPHG 153 (229)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCSC-CTTGG-------GCTTCSEEECCSS-CCCCCCTT
T ss_pred cCCCcCEEECCCC-cCCccChhHh-CcchhhCeEeccCCc-cccc-Ccccc-------cCCCCCEEECCCC-cCCccCHH
Confidence 3455555555555 3432211111 245666666666665 4421 01121 4778888888877 45543332
Q ss_pred HhhcCCCCCceEEEeeceeccCCC--hhHHHHHhhcCCceEEeeccc
Q 007372 546 WVKRPSFRGLHWLGIGQTRLASKG--NPVITEIHNERPWLTFCLDGC 590 (606)
Q Consensus 546 ~l~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~g~ 590 (606)
.+ ..+++|+.|++++|++..+. ...+..+..........++|.
T Consensus 154 ~~--~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~ 198 (229)
T 3e6j_A 154 AF--DRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGK 198 (229)
T ss_dssp TT--TTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSS
T ss_pred HH--hCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCc
Confidence 23 35778888888888876541 233444444433334444443
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=4.4e-09 Score=102.23 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=38.6
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCC
Q 007372 337 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 416 (606)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 416 (606)
.+++.+.+.+. +....+..+...|++|+.++++++. ++..+-..+.+|++|+.|++..+ +...+-.++..|++|+
T Consensus 202 ~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 202 RDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred cccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhcc
Confidence 34455555442 2333344444445555555555443 33333334445556666666543 3333334445555555
Q ss_pred -EEEccC
Q 007372 417 -ALNLTG 422 (606)
Q Consensus 417 -~L~l~~ 422 (606)
.+.+..
T Consensus 277 ~~l~l~~ 283 (329)
T 3sb4_A 277 GTLELPA 283 (329)
T ss_dssp EEEEECT
T ss_pred EEEEEcc
Confidence 555554
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.79 E-value=5.1e-10 Score=101.75 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=69.2
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
++|+.|+++++ .++......+..+++|+.|++++|.++.... ..+. .+
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~--------------------------~~~~-----~l 79 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAP--------------------------DAFQ-----GL 79 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECT--------------------------TTTT-----TC
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCH--------------------------HHhh-----CC
Confidence 45666666655 4444333344555566666666655543211 1111 34
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
++|++|++++| .++...... ...+++|++|++++|. ++......+. .+++|++|++++| .++......+
T Consensus 80 ~~L~~L~Ls~N-~l~~l~~~~-f~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~ 148 (220)
T 2v9t_B 80 RSLNSLVLYGN-KITELPKSL-FEGLFSLQLLLLNANK-INCLRVDAFQ-------DLHNLNLLSLYDN-KLQTIAKGTF 148 (220)
T ss_dssp SSCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTTTT
T ss_pred cCCCEEECCCC-cCCccCHhH-ccCCCCCCEEECCCCC-CCEeCHHHcC-------CCCCCCEEECCCC-cCCEECHHHH
Confidence 45555555554 333211111 1244566666666665 4332222222 4677777777777 3554333333
Q ss_pred hcCCCCCceEEEeeceeccCC
Q 007372 548 KRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 548 ~~~~~~~L~~L~l~~~~~~~~ 568 (606)
. .+++|+.|++++|++..+
T Consensus 149 ~--~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 149 S--PLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp T--TCTTCCEEECCSSCEECS
T ss_pred h--CCCCCCEEEeCCCCcCCC
Confidence 2 467788888888877654
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.9e-10 Score=111.97 Aligned_cols=248 Identities=12% Similarity=0.101 Sum_probs=127.1
Q ss_pred CCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCC--HHHHHHHHHcCCCCcEEEEcCCCCCCHH
Q 007372 276 CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVS--DAGFAAILLSCHSLKKFEVRSASFLSDL 353 (606)
Q Consensus 276 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 353 (606)
..++++|.+.+. +....+..+...+++|+.|+++++ .+. ... . ...+.++.+....+ .+...
T Consensus 24 ~~~l~~L~l~g~----------i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~-~---~~~~~~~~~~~~~~-~I~~~ 87 (329)
T 3sb4_A 24 ANSITHLTLTGK----------LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGK-A---GTYPNGKFYIYMAN-FVPAY 87 (329)
T ss_dssp HHHCSEEEEEEE----------ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEES-S---SSSGGGCCEEECTT-EECTT
T ss_pred hCceeEEEEecc----------ccHHHHHHHHHhhccCeEEecCcc-eeEEecCc-c---cccccccccccccc-ccCHH
Confidence 457899999864 666777777655889999999877 333 000 0 00111122222221 11111
Q ss_pred HHHHHHcC--------CCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccC---
Q 007372 354 AFHDLTGV--------PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTG--- 422 (606)
Q Consensus 354 ~~~~l~~~--------~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~--- 422 (606)
.+.. |++|++|.+.. . ++..+-..+.+|++|+.|+++.+ .+...+..++..+.++..+....
T Consensus 88 ----aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 88 ----AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp ----TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred ----HhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhh
Confidence 1233 56666666665 2 44433444556667777777655 33222223333333333333222
Q ss_pred --------------------------CCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecC
Q 007372 423 --------------------------ADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLG 476 (606)
Q Consensus 423 --------------------------~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~ 476 (606)
...-...+........+++.+.+.+. +.......+. ..+++|+.++++
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~----~~~~~L~~l~L~ 234 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIR----DYMPNLVSLDIS 234 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHH----HHCTTCCEEECT
T ss_pred hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHH----HhcCCCeEEECC
Confidence 11000001111112334555555543 4444454444 346788888887
Q ss_pred CCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCC-EEeccCCCCCCHHHHHHhhcCCCCCc
Q 007372 477 YMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLR-RLDLCNCIGLSVDSLRWVKRPSFRGL 555 (606)
Q Consensus 477 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~l~~~~~~~L 555 (606)
++ +++..+-..+ .+|++|++|++.++ ++..+-.++. +|++|+ .+++.+ .++..+...|. +|++|
T Consensus 235 ~n-~i~~I~~~aF-~~~~~L~~l~l~~n--i~~I~~~aF~-------~~~~L~~~l~l~~--~l~~I~~~aF~--~c~~L 299 (329)
T 3sb4_A 235 KT-NATTIPDFTF-AQKKYLLKIKLPHN--LKTIGQRVFS-------NCGRLAGTLELPA--SVTAIEFGAFM--GCDNL 299 (329)
T ss_dssp TB-CCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTT-------TCTTCCEEEEECT--TCCEECTTTTT--TCTTE
T ss_pred CC-CcceecHhhh-hCCCCCCEEECCcc--cceehHHHhh-------CChhccEEEEEcc--cceEEchhhhh--CCccC
Confidence 75 4544333333 46778888888765 3332223333 577888 888876 35554444443 67888
Q ss_pred eEEEeeceeccC
Q 007372 556 HWLGIGQTRLAS 567 (606)
Q Consensus 556 ~~L~l~~~~~~~ 567 (606)
+.|++.+|.+..
T Consensus 300 ~~l~l~~n~i~~ 311 (329)
T 3sb4_A 300 RYVLATGDKITT 311 (329)
T ss_dssp EEEEECSSCCCE
T ss_pred CEEEeCCCccCc
Confidence 888887776543
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.74 E-value=1.9e-09 Score=98.61 Aligned_cols=131 Identities=14% Similarity=0.038 Sum_probs=57.8
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
++|+.|++++| .++......+..+++|++|++++|.++..... ....+++|+.|++++|. ++......+ ..+
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~-----~~l 111 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQ-LTVLPSAVF-----DRL 111 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-----TTC
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCc-CCccChhHh-----Ccc
Confidence 34444444444 33332223334444455555554443321111 11234455555555543 322111111 245
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCC
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 537 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 537 (606)
++|+.|++++| .++... ..+ ..+++|+.|++++|. ++......+. .+++|+.|++++|+
T Consensus 112 ~~L~~L~Ls~N-~l~~lp-~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 112 VHLKELFMCCN-KLTELP-RGI-ERLTHLTHLALDQNQ-LKSIPHGAFD-------RLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCCEEECCSS-CCCSCC-TTG-GGCTTCSEEECCSSC-CCCCCTTTTT-------TCTTCCEEECTTSC
T ss_pred hhhCeEeccCC-cccccC-ccc-ccCCCCCEEECCCCc-CCccCHHHHh-------CCCCCCEEEeeCCC
Confidence 56666666655 443211 111 355666666666665 4422111122 46677777777765
No 128
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.74 E-value=1.5e-07 Score=81.74 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcC---CCCcEEEecCCC
Q 007372 429 GLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG---IGIIDLCVRSCF 505 (606)
Q Consensus 429 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~ 505 (606)
.+..+...-+.|++|+++++..+.+.+...++.+.. .-+.|+.|+|++| .+++.+...+++.+ +.|++|+|++|.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 344444455667777776654466666665554332 3567777777777 77777766665443 678888888776
Q ss_pred CCCHHHHHHHHhhCCCcccCCCCCEEeccCCC--CCCHHHHHHhhc--CCCCCceEEEeeceecc
Q 007372 506 YVTDASVEALARKQPDQEKSKQLRRLDLCNCI--GLSVDSLRWVKR--PSFRGLHWLGIGQTRLA 566 (606)
Q Consensus 506 ~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~--~l~~~~~~~l~~--~~~~~L~~L~l~~~~~~ 566 (606)
|++.+...+...+. .-++|++|+++++. .+++.+...+.. ...+.|++|+++.+.+.
T Consensus 110 -Ig~~Ga~ala~aL~---~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 110 -LTPELLARLLRSTL---VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp -CCHHHHHHHHHHTT---TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred -CCHHHHHHHHHHHh---hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 88888877777666 56678888887652 356654433211 23567888888766543
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.73 E-value=1.5e-09 Score=98.70 Aligned_cols=13 Identities=23% Similarity=0.163 Sum_probs=7.3
Q ss_pred CCCCCEEeccCCC
Q 007372 525 SKQLRRLDLCNCI 537 (606)
Q Consensus 525 ~~~L~~L~l~~c~ 537 (606)
+++|++|++++|+
T Consensus 152 l~~L~~L~L~~N~ 164 (220)
T 2v70_A 152 LHSLSTLNLLANP 164 (220)
T ss_dssp CTTCCEEECCSCC
T ss_pred CCCCCEEEecCcC
Confidence 5555555555553
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.71 E-value=2.7e-09 Score=93.21 Aligned_cols=13 Identities=8% Similarity=0.164 Sum_probs=6.0
Q ss_pred CCCceEEEeecee
Q 007372 552 FRGLHWLGIGQTR 564 (606)
Q Consensus 552 ~~~L~~L~l~~~~ 564 (606)
+|+|+.|++++|.
T Consensus 139 l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 139 VPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCSEETTEECC
T ss_pred CCccceeCCCcCC
Confidence 4444444444444
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.67 E-value=1.1e-08 Score=89.35 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=38.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHhcCC-CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 362 PCALVEVRLLWCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 362 ~~~L~~L~l~~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
+++|+.|++++|. ++.. ..+..+ ++|+.|++++| .+++. ..+..+++|+.|++++|.++.... .+...+++|
T Consensus 18 ~~~L~~L~l~~n~-l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L 90 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IPVI--ENLGATLDQFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDL 90 (176)
T ss_dssp TTSCEEEECTTSC-CCSC--CCGGGGTTCCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTC
T ss_pred cCCceEEEeeCCC-Cchh--HHhhhcCCCCCEEECCCC-CCCcc--cccccCCCCCEEECCCCcccccCc-chhhcCCCC
Confidence 3455555555543 3321 122222 36666666665 44432 445555666666666665543211 111234555
Q ss_pred cEEEccCCC
Q 007372 441 MNLCLRGCK 449 (606)
Q Consensus 441 ~~L~l~~~~ 449 (606)
+.|++++|.
T Consensus 91 ~~L~L~~N~ 99 (176)
T 1a9n_A 91 TELILTNNS 99 (176)
T ss_dssp CEEECCSCC
T ss_pred CEEECCCCc
Confidence 555555554
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.65 E-value=5.4e-10 Score=116.34 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=51.0
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHH-HHHHHhcCCC
Q 007372 361 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG-LSILAQGNLP 439 (606)
Q Consensus 361 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~ 439 (606)
.+++|+.|++++|. ++. ....++.+++|+.|++++| .++. ++.+..+++|+.|++++|.++... ... ...+++
T Consensus 461 ~l~~L~~L~Ls~N~-l~~-lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~ 534 (567)
T 1dce_A 461 QLLLVTHLDLSHNR-LRA-LPPALAALRCLEVLQASDN-ALEN--VDGVANLPRLQELLLCNNRLQQSAAIQP-LVSCPR 534 (567)
T ss_dssp GGTTCCEEECCSSC-CCC-CCGGGGGCTTCCEEECCSS-CCCC--CGGGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTT
T ss_pred ccccCcEeecCccc-ccc-cchhhhcCCCCCEEECCCC-CCCC--CcccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCC
Confidence 34566666666655 331 1234556777777777776 5554 235667777777777777666542 222 234677
Q ss_pred ccEEEccCCC
Q 007372 440 IMNLCLRGCK 449 (606)
Q Consensus 440 L~~L~l~~~~ 449 (606)
|+.|++++|.
T Consensus 535 L~~L~L~~N~ 544 (567)
T 1dce_A 535 LVLLNLQGNS 544 (567)
T ss_dssp CCEEECTTSG
T ss_pred CCEEEecCCc
Confidence 7777777776
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.64 E-value=2.2e-10 Score=112.48 Aligned_cols=205 Identities=10% Similarity=0.031 Sum_probs=130.7
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCC
Q 007372 337 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 416 (606)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 416 (606)
+++++|+++++. ++.. -......+++|++|++++|.-........+.++++++++.+..+..+.......+..+++|+
T Consensus 30 ~~l~~L~Ls~N~-i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCC-CSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCc-CCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 589999999875 2211 01223567999999999987333233334567788776544433367665556778899999
Q ss_pred EEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCC
Q 007372 417 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGI 496 (606)
Q Consensus 417 ~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 496 (606)
+|++++|.++........ ....+..|++.++..++......+. .....++.|++++| .++....... ..++|
T Consensus 108 ~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~----~~~~~l~~L~L~~N-~i~~i~~~~f--~~~~L 179 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFV----GLSFESVILWLNKN-GIQEIHNSAF--NGTQL 179 (350)
T ss_dssp EEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSST----TSBSSCEEEECCSS-CCCEECTTSS--TTEEE
T ss_pred cccccccccccCCchhhc-ccchhhhhhhccccccccccccchh----hcchhhhhhccccc-cccCCChhhc--cccch
Confidence 999999977543211111 2456788888777656543332223 23357899999998 6664221111 34689
Q ss_pred cEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeecee
Q 007372 497 IDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 497 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 564 (606)
++|.+.++..++......+. .+++|++|++++| .++..+ ...+.+|+.|.+.++.
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~-------~l~~L~~LdLs~N-~l~~lp-----~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFH-------GASGPVILDISRT-RIHSLP-----SYGLENLKKLRARSTY 234 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTT-------TEECCSEEECTTS-CCCCCC-----SSSCTTCCEEECTTCT
T ss_pred hHHhhccCCcccCCCHHHhc-------cCcccchhhcCCC-CcCccC-----hhhhccchHhhhccCC
Confidence 99999876545543222233 5889999999999 466532 2346688888877765
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.64 E-value=4.3e-08 Score=101.49 Aligned_cols=165 Identities=15% Similarity=0.091 Sum_probs=73.5
Q ss_pred CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccc
Q 007372 218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 297 (606)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 297 (606)
+++|++|+++++.++. ++ ..+++|+.|++++|... .++. +.. +|++|+++++.. ..
T Consensus 79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~------~ip~-----l~~--~L~~L~Ls~N~l------~~ 134 (571)
T 3cvr_A 79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLS------TLPE-----LPA--SLKHLDVDNNQL------TM 134 (571)
T ss_dssp CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS------CCCC-----CCT--TCCEEECCSSCC------SC
T ss_pred cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCC------Ccch-----hhc--CCCEEECCCCcC------CC
Confidence 3556666666655552 22 33566666666665321 1111 111 666666665431 11
Q ss_pred cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372 298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 377 (606)
Q Consensus 298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 377 (606)
+.. .+++|+.|+++++ .++. +.. .+++|+.|++++|..- . +..+ .++|+.|++++|. ++
T Consensus 135 lp~--------~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~L~-~--lp~l---~~~L~~L~Ls~N~-L~ 193 (571)
T 3cvr_A 135 LPE--------LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQLT-F--LPEL---PESLEALDVSTNL-LE 193 (571)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCS-C--CCCC---CTTCCEEECCSSC-CS
T ss_pred CCC--------cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCCCC-C--cchh---hCCCCEEECcCCC-CC
Confidence 111 3456666666655 3332 111 3455566665555311 1 0001 1455555555554 32
Q ss_pred HHHHHHhcC-----CCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHH
Q 007372 378 SETVKKLAS-----SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLS 431 (606)
Q Consensus 378 ~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 431 (606)
.... +.. .+.|+.|++++| .++... ..+..+++|+.|++++|.++.....
T Consensus 194 ~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 194 SLPA--VPVRNHHSEETEIFFRCREN-RITHIP-ENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SCCC--CC--------CCEEEECCSS-CCCCCC-GGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred chhh--HHHhhhcccccceEEecCCC-cceecC-HHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 1111 111 112266666655 444321 2233455666666666666554433
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.62 E-value=1.5e-10 Score=113.60 Aligned_cols=227 Identities=13% Similarity=0.039 Sum_probs=144.0
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCC
Q 007372 311 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 390 (606)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 390 (606)
+++++|+++++ .++...- ..+.++++|++|+++++....... ......++++.++....+..+.......+..+++|
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESC-CCSEECT-TSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccCC-cCCCcCH-HHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 58999999988 5542111 123478999999999986322110 11234567777655554444665545567789999
Q ss_pred cEEEccCCCCCChHHHHcccCCCCCCEEEccCC-CCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCC
Q 007372 391 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS 469 (606)
Q Consensus 391 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~ 469 (606)
+.|++++| .+.......+....++..+++.++ .+.......+......++.|++++|. ++...... -...+
T Consensus 107 ~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~------f~~~~ 178 (350)
T 4ay9_X 107 QYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSA------FNGTQ 178 (350)
T ss_dssp CEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTS------STTEE
T ss_pred cccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhh------ccccc
Confidence 99999988 555432223335566778888764 55443222222223578999999986 54322111 13568
Q ss_pred CCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhc
Q 007372 470 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR 549 (606)
Q Consensus 470 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 549 (606)
|+++++.++..++......+ ..+++|++|++++|. |+. ++. +.+.+|++|.+.++..++..+ .+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N~-l~~-----lp~-----~~~~~L~~L~~l~~~~l~~lP--~l-- 242 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVF-HGASGPVILDISRTR-IHS-----LPS-----YGLENLKKLRARSTYNLKKLP--TL-- 242 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTSC-CCC-----CCS-----SSCTTCCEEECTTCTTCCCCC--CT--
T ss_pred hhHHhhccCCcccCCCHHHh-ccCcccchhhcCCCC-cCc-----cCh-----hhhccchHhhhccCCCcCcCC--Cc--
Confidence 99999987656654332222 467999999999997 653 111 146789999988887665532 22
Q ss_pred CCCCCceEEEeecee
Q 007372 550 PSFRGLHWLGIGQTR 564 (606)
Q Consensus 550 ~~~~~L~~L~l~~~~ 564 (606)
..+++|+.+++..+.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 468899999997544
No 136
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.50 E-value=4.6e-07 Score=78.59 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=97.0
Q ss_pred HHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcC---CCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCE
Q 007372 454 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG---IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRR 530 (606)
Q Consensus 454 ~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~ 530 (606)
..+..+. ..-+.|++|+++++..+.+.+...+++.+ +.|++|+|++|. |+|.+..+++..+. ..++|++
T Consensus 31 ~~l~~ll----~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~---~N~tL~~ 102 (197)
T 1pgv_A 31 SCINRLR----EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIE---TSPSLRV 102 (197)
T ss_dssp HHHHHHH----TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHH---HCSSCCE
T ss_pred HHHHHHH----hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHh---cCCccCe
Confidence 3455555 56789999999986689999998888765 789999999998 99999888887665 6789999
Q ss_pred EeccCCCCCCHHHHHHhhc--CCCCCceEEEeece---eccCCChhHHHHHhhcCCceE-Eeeccccc
Q 007372 531 LDLCNCIGLSVDSLRWVKR--PSFRGLHWLGIGQT---RLASKGNPVITEIHNERPWLT-FCLDGCEI 592 (606)
Q Consensus 531 L~l~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~~~~~l~-~~~~g~~~ 592 (606)
|+|++| .|++.+...+.. ...+.|++|+++++ .+.+.+...+.+.....+.++ ++++.+..
T Consensus 103 L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 103 LNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp EECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred EecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 999999 699988877642 34567999999875 434433334444444455555 77765443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.50 E-value=1.8e-09 Score=96.46 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=72.0
Q ss_pred cccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHH
Q 007372 408 SISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGIL 487 (606)
Q Consensus 408 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 487 (606)
.+..+++|+.|++++|.+++.. . ...+++|+.|++++|. ++.. .... ..+++|+.|++++| .++...
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~-~~~l~~L~~L~l~~n~-l~~l--~~~~----~~~~~L~~L~L~~N-~l~~l~-- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--S-LSGMENLRILSLGRNL-IKKI--ENLD----AVADTLEELWISYN-QIASLS-- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--C-HHHHTTCCEEEEEEEE-ECSC--SSHH----HHHHHCSEEEEEEE-ECCCHH--
T ss_pred HHhcCCCCCEEECCCCCCcccc--c-cccCCCCCEEECCCCC-cccc--cchh----hcCCcCCEEECcCC-cCCcCC--
Confidence 3445566666666666444321 1 1235666666666664 3311 1111 12357777777776 555422
Q ss_pred HHHHcCCCCcEEEecCCCCCCHHH-HHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHH--------HhhcCCCCCceEE
Q 007372 488 TIAAAGIGIIDLCVRSCFYVTDAS-VEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR--------WVKRPSFRGLHWL 558 (606)
Q Consensus 488 ~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--------~l~~~~~~~L~~L 558 (606)
.+ ..+++|++|++++|. +++.. +..+. .+++|++|++++|+ ++..... ......+|+|+.|
T Consensus 110 ~~-~~l~~L~~L~l~~N~-i~~~~~~~~l~-------~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 110 GI-EKLVNLRVLYMSNNK-ITNWGEIDKLA-------ALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp HH-HHHHHSSEEEESEEE-CCCHHHHHHHT-------TTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cc-ccCCCCCEEECCCCc-CCchhHHHHHh-------cCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 23 345677777777776 55432 23444 37777777777773 4332110 0001357788877
Q ss_pred EeeceeccCC
Q 007372 559 GIGQTRLASK 568 (606)
Q Consensus 559 ~l~~~~~~~~ 568 (606)
+ ++++...
T Consensus 180 d--~~~i~~~ 187 (198)
T 1ds9_A 180 D--GMPVDVD 187 (198)
T ss_dssp C--CGGGTTT
T ss_pred C--CcccCHH
Confidence 6 6666554
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.48 E-value=1.6e-08 Score=90.14 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=83.6
Q ss_pred HhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhh
Q 007372 383 KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCV 462 (606)
Q Consensus 383 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 462 (606)
.+..+++|+.|++++| .+++ +..+..+++|+.|++++|.++.. ......+++|+.|++++|. ++.. ..+.
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~--l~~~~~l~~L~~L~l~~n~l~~l--~~~~~~~~~L~~L~L~~N~-l~~l--~~~~-- 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEK--ISSLSGMENLRILSLGRNLIKKI--ENLDAVADTLEELWISYNQ-IASL--SGIE-- 112 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESC--CCCHHHHTTCCEEEEEEEEECSC--SSHHHHHHHCSEEEEEEEE-CCCH--HHHH--
T ss_pred HHhcCCCCCEEECCCC-CCcc--ccccccCCCCCEEECCCCCcccc--cchhhcCCcCCEEECcCCc-CCcC--Cccc--
Confidence 4556788888888876 5555 23566778888888888865532 1222335788888888886 5442 2333
Q ss_pred cCCCCCCCCEEecCCCCCCCHHHH-HHHHHcCCCCcEEEecCCCCCCHHH----------HHHHHhhCCCcccCCCCCEE
Q 007372 463 GGTISQSLTTLDLGYMPGISDDGI-LTIAAAGIGIIDLCVRSCFYVTDAS----------VEALARKQPDQEKSKQLRRL 531 (606)
Q Consensus 463 ~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~~L~~L~l~~~~~l~~~~----------~~~l~~~~~~~~~~~~L~~L 531 (606)
.+++|++|++++| .+++... ..+ ..+++|++|++++|+ ++... ...+. .+++|+.|
T Consensus 113 ---~l~~L~~L~l~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~-------~l~~L~~L 179 (198)
T 1ds9_A 113 ---KLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVK-------RLPNLKKL 179 (198)
T ss_dssp ---HHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHH-------HCSSCSEE
T ss_pred ---cCCCCCEEECCCC-cCCchhHHHHH-hcCCCCCEEEecCCc-cccccccccchHHHHHHHHH-------hCCCcEEE
Confidence 4678999999888 6665433 334 467889999998887 54331 11233 48889988
Q ss_pred e
Q 007372 532 D 532 (606)
Q Consensus 532 ~ 532 (606)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.43 E-value=4.1e-08 Score=85.77 Aligned_cols=90 Identities=14% Similarity=0.004 Sum_probs=54.8
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHH
Q 007372 466 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 545 (606)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 545 (606)
.+++|++|++++| .++......+ ..+++|++|++++|. ++......+. .+++|++|++++| .++.....
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~~~~~-------~l~~L~~L~l~~N-~l~~~~~~ 118 (177)
T 2o6r_A 50 KLTQLTKLSLSQN-QIQSLPDGVF-DKLTKLTILYLHENK-LQSLPNGVFD-------KLTQLKELALDTN-QLKSVPDG 118 (177)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTT
T ss_pred CcccccEEECCCC-cceEeChhHc-cCCCccCEEECCCCC-ccccCHHHhh-------CCcccCEEECcCC-cceEeCHH
Confidence 4566666666666 4442221111 345777777777775 5432211122 4788899999888 46643332
Q ss_pred HhhcCCCCCceEEEeeceeccCC
Q 007372 546 WVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 546 ~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
.+ ..+++|+.|++++|++...
T Consensus 119 ~~--~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 119 IF--DRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TT--TTCTTCCEEECCSSCBCCC
T ss_pred Hh--cCCcccCEEEecCCCeecc
Confidence 22 3578899999999998765
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.37 E-value=5.9e-08 Score=101.03 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=77.3
Q ss_pred cceeEEeecCCcccchHHHHHHhhcccccccCcccccccccCCCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCC
Q 007372 176 STIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRP 255 (606)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 255 (606)
..|+.|+++++....++. +..+++|+.|+++++.+.. ++..+..+++|+.|++++|.
T Consensus 441 ~~L~~L~Ls~n~l~~lp~---------------------~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH---------------------LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp TTCSEEECTTSCCSSCCC---------------------GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC
T ss_pred cCceEEEecCCCCCCCcC---------------------ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCC
Confidence 467788888775443322 3447888888888877763 33334567888888888864
Q ss_pred CCCcccccccChhHHhhccCCCCccEEEeccccccCCCCccccChHHHHHHHhcCCCccEEEcCCCCCCCHH--HHHHHH
Q 007372 256 NTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDA--GFAAIL 333 (606)
Q Consensus 256 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~~~~~~ 333 (606)
. +. +..+..+++|+.|+++++.. +..........+++|+.|+++++ .++.. ....+.
T Consensus 498 l---------~~--lp~l~~l~~L~~L~Ls~N~l---------~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~ 556 (567)
T 1dce_A 498 L---------EN--VDGVANLPRLQELLLCNNRL---------QQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLA 556 (567)
T ss_dssp C---------CC--CGGGTTCSSCCEEECCSSCC---------CSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHH
T ss_pred C---------CC--CcccCCCCCCcEEECCCCCC---------CCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHH
Confidence 3 21 22567788888888887642 22110111236788888888887 34321 223344
Q ss_pred HcCCCCcEEEE
Q 007372 334 LSCHSLKKFEV 344 (606)
Q Consensus 334 ~~~~~L~~L~l 344 (606)
..+|+|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 56888888853
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.32 E-value=2.2e-07 Score=82.20 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=20.2
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCC
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 426 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 426 (606)
+.++++|+.|++++| .++......+..+++|+.|++++|.++
T Consensus 50 ~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccC
Confidence 344555555555554 444333333444555555555555443
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.29 E-value=2.6e-08 Score=88.20 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=7.4
Q ss_pred CCCceEEEeeceecc
Q 007372 552 FRGLHWLGIGQTRLA 566 (606)
Q Consensus 552 ~~~L~~L~l~~~~~~ 566 (606)
+++|+.|++++|++.
T Consensus 125 l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 125 LNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEeCCCCcc
Confidence 444555555555444
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=2.5e-07 Score=80.71 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=18.0
Q ss_pred cCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCC
Q 007372 385 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 426 (606)
Q Consensus 385 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 426 (606)
..+++|++|++++| .++......+..+++|+.|++++|.++
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 49 DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCcc
Confidence 34455555555544 333322222334444555555544443
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.22 E-value=2.7e-07 Score=81.64 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=28.0
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 449 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 449 (606)
++|+.|+++++ .++... ..+..+++|+.|++++|.++...... ...+++|++|++++|.
T Consensus 31 ~~l~~L~L~~n-~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP-KELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTCCEEECCSS-CCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cCchhH-HHhhcccCCCEEECCCCcCCEeCHhH-ccCCCCCCEEECCCCc
Confidence 45566666555 444222 34455556666666665544321111 1224555555555544
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.20 E-value=2.4e-07 Score=81.96 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=17.8
Q ss_pred CCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCC
Q 007372 386 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 426 (606)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 426 (606)
.+++|++|++++| .++......+..+++|+.|++++|.++
T Consensus 52 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 52 RLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp GCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred cCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCC
Confidence 3445555555444 333332233444444555555444443
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.06 E-value=2.7e-07 Score=99.30 Aligned_cols=109 Identities=16% Similarity=0.045 Sum_probs=54.6
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCc
Q 007372 361 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 440 (606)
Q Consensus 361 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 440 (606)
.++.|+.|+|+++. +... ...+..+++|+.|+|++| .++. ....+..+++|+.|+|++|.++.. ..-...+++|
T Consensus 222 ~l~~L~~L~Ls~n~-l~~l-~~~~~~l~~L~~L~Ls~N-~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L 295 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ-IFNI-SANIFKYDFLTRLYLNGN-SLTE-LPAEIKNLSNLRVLDLSHNRLTSL--PAELGSCFQL 295 (727)
T ss_dssp CCCCCCEEECTTSC-CSCC-CGGGGGCCSCSCCBCTTS-CCSC-CCGGGGGGTTCCEEECTTSCCSSC--CSSGGGGTTC
T ss_pred cCCCCcEEECCCCC-CCCC-ChhhcCCCCCCEEEeeCC-cCcc-cChhhhCCCCCCEEeCcCCcCCcc--ChhhcCCCCC
Confidence 34555555555554 2211 112335566666666665 4442 123445666666666666655521 1112235666
Q ss_pred cEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCH
Q 007372 441 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 483 (606)
Q Consensus 441 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 483 (606)
+.|++++|. ++... ..+ ..+++|+.|+|++| .++.
T Consensus 296 ~~L~L~~N~-l~~lp-~~~-----~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 296 KYFYFFDNM-VTTLP-WEF-----GNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp SEEECCSSC-CCCCC-SST-----TSCTTCCCEECTTS-CCCS
T ss_pred CEEECCCCC-CCccC-hhh-----hcCCCccEEeCCCC-ccCC
Confidence 666666664 33111 111 24566666666666 4443
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.01 E-value=6.5e-08 Score=96.51 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=5.7
Q ss_pred CCCCceEEEeec
Q 007372 551 SFRGLHWLGIGQ 562 (606)
Q Consensus 551 ~~~~L~~L~l~~ 562 (606)
+|++|+.+.+..
T Consensus 364 ~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 GCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEEEEEG
T ss_pred CCCCCCEEEECC
Confidence 345555555443
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.99 E-value=1.9e-07 Score=92.69 Aligned_cols=14 Identities=7% Similarity=0.335 Sum_probs=7.0
Q ss_pred hcCCCCCcEEEccC
Q 007372 384 LASSRNLEVLDLGG 397 (606)
Q Consensus 384 l~~~~~L~~L~l~~ 397 (606)
+.+|++|+.+++..
T Consensus 222 F~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 222 FLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTCTTCCCEECCT
T ss_pred hhCCCCCCEEecCC
Confidence 34455555555543
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.92 E-value=1.5e-07 Score=93.85 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=35.0
Q ss_pred ccccCCCCccEEeccc--CCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEec
Q 007372 213 SSYYSSFNLRSLSLVL--DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLT 285 (606)
Q Consensus 213 ~~~~~~~~L~~L~l~~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 285 (606)
..|.++.+|+++.+.. ..+.+ ..+..|++|+.+++..+ ++..+-..+..+.+|+.+.+.
T Consensus 65 ~AF~~c~~L~~i~lp~~i~~I~~----~aF~~c~~L~~i~lp~~----------l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTVREIGE----FAFENCSKLEIINIPDS----------VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTTCTTEEEEECCTTCCEECT----TTTTTCTTCCEECCCTT----------CCEECTTTTTTCTTCCCCCCC
T ss_pred HHhhCCCCceEEEeCCCccCcch----hHhhCCCCCcEEEeCCC----------ceEccchhhcccccchhhccc
Confidence 3456688999998864 22332 23366899999998653 111122234566666665554
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.91 E-value=1.1e-06 Score=87.25 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=29.0
Q ss_pred hcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCC
Q 007372 384 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 449 (606)
Q Consensus 384 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 449 (606)
+.+|++|+.+.+.. .+...+-.++..|++|+.+.+..+ ++..+-.. +..| +|+.+.+.++.
T Consensus 296 F~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a-F~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 296 LEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA-FNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS-SSSS-CCCEEEECCSS
T ss_pred hhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh-CCCC-CCCEEEEcCCC
Confidence 34556666666643 244333344555666666666443 22211111 1234 66666665553
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.80 E-value=3.9e-06 Score=72.62 Aligned_cols=109 Identities=15% Similarity=0.063 Sum_probs=55.0
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHHHh
Q 007372 468 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 547 (606)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 547 (606)
++|+.|++++| .++......+ ..+++|++|++++|. ++......+. .+++|++|++++| .++......+
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~i~~~~~~-------~l~~L~~L~L~~N-~l~~l~~~~~ 101 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVF-DHLVNLQQLYFNSNK-LTAIPTGVFD-------KLTQLTQLDLNDN-HLKSIPRGAF 101 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCcEEEeCCC-CccccCHHHh-cCCcCCCEEECCCCC-CCccChhHhC-------CcchhhEEECCCC-ccceeCHHHh
Confidence 34555555554 3332211111 244566666666664 4321111111 4678888888887 4554332223
Q ss_pred hcCCCCCceEEEeeceeccCCC--hhHHHHHhhcCCceEEeecc
Q 007372 548 KRPSFRGLHWLGIGQTRLASKG--NPVITEIHNERPWLTFCLDG 589 (606)
Q Consensus 548 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~g 589 (606)
..+++|+.|++++|++.... ...+..+....+.......|
T Consensus 102 --~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~ 143 (174)
T 2r9u_A 102 --DNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDG 143 (174)
T ss_dssp --TTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESS
T ss_pred --ccccCCCEEEeCCCCcccccccHHHHHHHHHhcccccccccc
Confidence 25778888888888876551 23344444444333333333
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.80 E-value=4e-06 Score=90.14 Aligned_cols=113 Identities=16% Similarity=0.022 Sum_probs=79.4
Q ss_pred HhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhh
Q 007372 383 KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCV 462 (606)
Q Consensus 383 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 462 (606)
.+..+++|+.|+|++| .+.... ..+..+++|+.|+|++|.++.. ..-...+++|+.|++++|. ++.. ...+.
T Consensus 219 ~~~~l~~L~~L~Ls~n-~l~~l~-~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~-l~~l-p~~~~-- 290 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNL-QIFNIS-ANIFKYDFLTRLYLNGNSLTEL--PAEIKNLSNLRVLDLSHNR-LTSL-PAELG-- 290 (727)
T ss_dssp ---CCCCCCEEECTTS-CCSCCC-GGGGGCCSCSCCBCTTSCCSCC--CGGGGGGTTCCEEECTTSC-CSSC-CSSGG--
T ss_pred hhccCCCCcEEECCCC-CCCCCC-hhhcCCCCCCEEEeeCCcCccc--ChhhhCCCCCCEEeCcCCc-CCcc-Chhhc--
Confidence 4567899999999998 555322 2344789999999999988732 2223468999999999997 5521 12233
Q ss_pred cCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHH
Q 007372 463 GGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDA 510 (606)
Q Consensus 463 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 510 (606)
.+++|++|+|++| .++... ..+ ..+++|+.|++++|. ++..
T Consensus 291 ---~l~~L~~L~L~~N-~l~~lp-~~~-~~l~~L~~L~L~~N~-l~~~ 331 (727)
T 4b8c_D 291 ---SCFQLKYFYFFDN-MVTTLP-WEF-GNLCNLQFLGVEGNP-LEKQ 331 (727)
T ss_dssp ---GGTTCSEEECCSS-CCCCCC-SST-TSCTTCCCEECTTSC-CCSH
T ss_pred ---CCCCCCEEECCCC-CCCccC-hhh-hcCCCccEEeCCCCc-cCCC
Confidence 6789999999998 665322 123 467999999999998 6643
No 153
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.75 E-value=7.1e-06 Score=74.54 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCchhhhHHHHHHhcCchhhhhhHHhhhHHHHhhh
Q 007372 2 ETVPSAVLNKEILGRLDIEALCSLACVNRALRFSV 36 (606)
Q Consensus 2 ~~LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~ 36 (606)
.+||+||+. +||+||+++|++++++|||+|+.++
T Consensus 6 ~~LP~ei~l-~IlsfL~p~DL~~l~~vcr~Wr~la 39 (312)
T 3l2o_B 6 TRLPIDVQL-YILSFLSPHDLCQLGSTNHYWNETV 39 (312)
T ss_dssp HHSCHHHHH-HHHHTSCHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 479999999 8999999999999999999999987
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.71 E-value=1.2e-05 Score=69.26 Aligned_cols=83 Identities=19% Similarity=0.092 Sum_probs=34.9
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
++|+.|+++++ .++......+..+++|++|++++|.++..... ....+++|++|++++|. ++......+ ..+
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N~-l~~~~~~~~-----~~l 101 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-VFDKLTQLTQLSLNDNQ-LKSIPRGAF-----DNL 101 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-----TTC
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChh-hccCCCCCCEEECCCCc-cCEeCHHHh-----cCC
Confidence 34444555444 33333233344445555555555544322111 11234555555555554 322111111 245
Q ss_pred CCCCEEecCCC
Q 007372 468 QSLTTLDLGYM 478 (606)
Q Consensus 468 ~~L~~L~l~~~ 478 (606)
++|+.|++++|
T Consensus 102 ~~L~~L~L~~N 112 (170)
T 3g39_A 102 KSLTHIWLLNN 112 (170)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeCCC
Confidence 55666666555
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.68 E-value=1.4e-05 Score=69.02 Aligned_cols=83 Identities=16% Similarity=0.052 Sum_probs=38.0
Q ss_pred CCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCC
Q 007372 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 467 (606)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 467 (606)
++|+.|+++++ .++......+..+++|+.|+|++|.++..... ....+++|+.|++++|. ++......+ ..+
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~N~-l~~l~~~~~-----~~l 104 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG-VFDKLTQLTQLDLNDNH-LKSIPRGAF-----DNL 104 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-----TTC
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChh-HhCCcchhhEEECCCCc-cceeCHHHh-----ccc
Confidence 44555555554 34433333344555555555555544432111 11234556666665554 332111111 245
Q ss_pred CCCCEEecCCC
Q 007372 468 QSLTTLDLGYM 478 (606)
Q Consensus 468 ~~L~~L~l~~~ 478 (606)
++|++|++++|
T Consensus 105 ~~L~~L~L~~N 115 (174)
T 2r9u_A 105 KSLTHIYLYNN 115 (174)
T ss_dssp TTCSEEECCSS
T ss_pred cCCCEEEeCCC
Confidence 66666666665
No 156
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.66 E-value=2.1e-05 Score=72.62 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=32.9
Q ss_pred CCCchhhhHHHHHHhcCchhhhh-hHHhhhHHHHhhh
Q 007372 1 METVPSAVLNKEILGRLDIEALC-SLACVNRALRFSV 36 (606)
Q Consensus 1 i~~LP~evl~~~I~~~L~~~~~~-~~~~vck~w~~~~ 36 (606)
|..||+|++. .||.|||.++++ +|++|||+|+.++
T Consensus 51 ~~~LP~ell~-~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 51 LAELPEPLLL-RVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp TTSSCHHHHH-HHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred hhhCCHHHHH-HHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 4689999999 599999999999 9999999999987
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.62 E-value=1.5e-05 Score=79.29 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=33.7
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEeccCCCCCCHHHHH
Q 007372 466 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 545 (606)
Q Consensus 466 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 545 (606)
.|.+|+.++|... ++..+-..+ .+|.+|+++.|..+ ++..+-.++. +|++|+.+++.++. ....
T Consensus 309 ~c~~L~~i~lp~~--v~~I~~~aF-~~C~~L~~i~ip~s--v~~I~~~aF~-------~C~~L~~i~~~~~~----~~~~ 372 (394)
T 4gt6_A 309 GCISLKSIDIPEG--ITQILDDAF-AGCEQLERIAIPSS--VTKIPESAFS-------NCTALNNIEYSGSR----SQWN 372 (394)
T ss_dssp TCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEECTT--CCBCCGGGGT-------TCTTCCEEEESSCH----HHHH
T ss_pred CCCCcCEEEeCCc--ccEehHhHh-hCCCCCCEEEECcc--cCEEhHhHhh-------CCCCCCEEEECCce----eehh
Confidence 5666666666542 222111112 35666777666432 2222222333 46677777776541 1122
Q ss_pred HhhcCCCCCceEEEeecee
Q 007372 546 WVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 546 ~l~~~~~~~L~~L~l~~~~ 564 (606)
.+ ..+.+|+.+.+..+.
T Consensus 373 ~~--~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 373 AI--STDSGLQNLPVAPGS 389 (394)
T ss_dssp TC--BCCCCC---------
T ss_pred hh--hccCCCCEEEeCCCC
Confidence 22 245666666665543
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.54 E-value=2.4e-05 Score=67.32 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=34.7
Q ss_pred CCCCEEEccCCCCChHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHc
Q 007372 413 RKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA 492 (606)
Q Consensus 413 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 492 (606)
++|+.|++++|.++...... ...+++|++|++++|. ++......+ ..+++|++|++++| .++......+ ..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f-----~~l~~L~~L~L~~N-~l~~~~~~~~-~~ 100 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQ-LTVLPAGVF-----DKLTQLTQLSLNDN-QLKSIPRGAF-DN 100 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTT-TT
T ss_pred CCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCCC-cCccChhhc-----cCCCCCCEEECCCC-ccCEeCHHHh-cC
Confidence 44555555555444321111 1124555555555554 332111111 23455555555555 3332111111 23
Q ss_pred CCCCcEEEecCCC
Q 007372 493 GIGIIDLCVRSCF 505 (606)
Q Consensus 493 ~~~L~~L~l~~~~ 505 (606)
+++|+.|++++|+
T Consensus 101 l~~L~~L~L~~N~ 113 (170)
T 3g39_A 101 LKSLTHIWLLNNP 113 (170)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 4555555555554
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.42 E-value=8.9e-06 Score=80.95 Aligned_cols=291 Identities=15% Similarity=0.175 Sum_probs=147.9
Q ss_pred ccCC-CCccEEeccc--CCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEEeccccccC
Q 007372 215 YYSS-FNLRSLSLVL--DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH 291 (606)
Q Consensus 215 ~~~~-~~L~~L~l~~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 291 (606)
|.++ ..|+++.+.. ..+.+. .+..|.+|+.+.+..+.. ..++.-+-..+..|.+|+.+.+...
T Consensus 59 F~~~~~~L~sI~iP~svt~Ig~~----AF~~C~~L~~i~~~~n~p------~~l~~Ig~~aF~~c~~L~~i~~~~~---- 124 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDTVTEIGSN----AFYNCTSLKRVTIQDNKP------SCVKKIGRQAFMFCSELTDIPILDS---- 124 (394)
T ss_dssp TTTCCSCCCEEEECTTCCEECTT----TTTTCTTCCEEEEGGGCC------CCCCEECTTTTTTCTTCCBCGGGTT----
T ss_pred ccCCCCcCEEEEECCCeeEEhHH----HhhCCccCceEeecCCCC------CeeeEechhhchhcccceeeccCCc----
Confidence 3344 3578887753 233332 235678888888765310 1122222334556666666655422
Q ss_pred CCCccccChHHHHHHHhcCCCccEEEcCCC-CCCCHHHHHHHHHcCCCCcEEEEcCCC-CCCHHHHHHHHcCCCCccEEE
Q 007372 292 QGTFKRVNDMGMFLLSEGCKGLESVRLGGF-SKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVR 369 (606)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~ 369 (606)
...+.... ...|.+|+.+.+... ..+.+..+ ..|.+|+.+.+.... .+...++ .+.+|+.+.
T Consensus 125 ---~~~I~~~a----F~~c~~L~~i~lp~~~~~I~~~~F----~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i~ 188 (394)
T 4gt6_A 125 ---VTEIDSEA----FHHCEELDTVTIPEGVTSVADGMF----SYCYSLHTVTLPDSVTAIEERAF-----TGTALTQIH 188 (394)
T ss_dssp ---CSEECTTT----TTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTTT-----TTCCCSEEE
T ss_pred ---cceehhhh----hhhhcccccccccceeeeecccce----ecccccccccccceeeEeccccc-----cccceeEEE
Confidence 11122111 125677777777542 22222222 256777777765431 1111111 134577776
Q ss_pred ccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHH------------HHcccCCCCCCEEEccCC--CCChHHHHHHHh
Q 007372 370 LLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTC------------LRSISCLRKLTALNLTGA--DITDSGLSILAQ 435 (606)
Q Consensus 370 l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~------------~~~l~~~~~L~~L~l~~~--~i~~~~~~~l~~ 435 (606)
+... +...+...+..+.+++.............. .........+..+.+... .+.+. ...
T Consensus 189 ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~----aF~ 262 (394)
T 4gt6_A 189 IPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETH----AFD 262 (394)
T ss_dssp ECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTT----TTT
T ss_pred ECCc--ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccc----eee
Confidence 6542 222222334456666666554321110000 000112233344444322 12211 223
Q ss_pred cCCCccEEEccCCCCCCHHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHH
Q 007372 436 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL 515 (606)
Q Consensus 436 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 515 (606)
.|+.|+.+.+.+.. ...+-..+ ..++.|+.+.+.. .++..+-..+ .+|.+|+.+.|..+ ++..+-.++
T Consensus 263 ~c~~L~~i~lp~~~--~~I~~~aF-----~~c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF 330 (394)
T 4gt6_A 263 SCAYLASVKMPDSV--VSIGTGAF-----MNCPALQDIEFSS--RITELPESVF-AGCISLKSIDIPEG--ITQILDDAF 330 (394)
T ss_dssp TCSSCCEEECCTTC--CEECTTTT-----TTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTT
T ss_pred ecccccEEeccccc--ceecCccc-----ccccccccccCCC--cccccCceee-cCCCCcCEEEeCCc--ccEehHhHh
Confidence 57888888886542 21111122 4688999999865 3333222222 57899999999654 332222333
Q ss_pred HhhCCCcccCCCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeecee
Q 007372 516 ARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 564 (606)
Q Consensus 516 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 564 (606)
. +|++|+++.+..+ ++..+...+. +|++|+.+++.++.
T Consensus 331 ~-------~C~~L~~i~ip~s--v~~I~~~aF~--~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 331 A-------GCEQLERIAIPSS--VTKIPESAFS--NCTALNNIEYSGSR 368 (394)
T ss_dssp T-------TCTTCCEEEECTT--CCBCCGGGGT--TCTTCCEEEESSCH
T ss_pred h-------CCCCCCEEEECcc--cCEEhHhHhh--CCCCCCEEEECCce
Confidence 3 6899999999754 5555544554 79999999999876
No 160
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.04 E-value=0.00016 Score=73.61 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=32.2
Q ss_pred CCchhhhHHHHHHhcCchhhhhhHHhhhHHHHhhh
Q 007372 2 ETVPSAVLNKEILGRLDIEALCSLACVNRALRFSV 36 (606)
Q Consensus 2 ~~LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~ 36 (606)
..||+|++. +||+||+.++++++++|||+|+.++
T Consensus 16 ~~lp~~~~~-~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 16 TSLPFEISL-KIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp HHSCHHHHH-HHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred HHCCHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 469999999 7999999999999999999999887
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.04 E-value=0.00023 Score=69.35 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=27.6
Q ss_pred CCCccEEEccC-CCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCCC
Q 007372 362 PCALVEVRLLW-CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 426 (606)
Q Consensus 362 ~~~L~~L~l~~-~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 426 (606)
+++|+.|+|++ +. +.......+.++++|+.|+|++| .++......+..+++|+.|+|++|.++
T Consensus 30 ~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 30 AENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 34455555543 22 33332233444455555555544 344333333444445555555554443
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.00 E-value=0.0013 Score=60.41 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=30.5
Q ss_pred CCCCCcEEEccCCCCCChH-HHHcccCCCCCCEEEccCCCCCh------HHHHHHHhcCCCccEEEc
Q 007372 386 SSRNLEVLDLGGCKSIADT-CLRSISCLRKLTALNLTGADITD------SGLSILAQGNLPIMNLCL 445 (606)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~------~~~~~l~~~~~~L~~L~l 445 (606)
.+++|+.|+|++| .+++. .+..+..+ +|+.|++.+|.+.. .-...+...+|+|+.|+-
T Consensus 194 ~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 194 KAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4566777777666 44432 23333333 66777777665543 111233344666666653
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.92 E-value=0.00074 Score=62.02 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=7.8
Q ss_pred cCCCccEEEccCCC
Q 007372 436 GNLPIMNLCLRGCK 449 (606)
Q Consensus 436 ~~~~L~~L~l~~~~ 449 (606)
.+|+|++|++++|.
T Consensus 168 ~l~~L~~L~Ls~N~ 181 (267)
T 3rw6_A 168 NIPELLSLNLSNNR 181 (267)
T ss_dssp HCTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCC
Confidence 45555555555554
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.86 E-value=0.00045 Score=67.22 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=41.0
Q ss_pred cCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhcCCCCCcEEEccCCCCCChHHHHcccCCCC
Q 007372 335 SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRK 414 (606)
Q Consensus 335 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 414 (606)
.+++|+.|+++++..+.... ......+++|+.|+|+++. +.......+.++++|+.|+|++| .++......+..++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~- 104 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS- 104 (347)
T ss_dssp SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC-
T ss_pred CCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC-
Confidence 34556666665411121110 1112345566666666654 44433344455666666666665 44432222222232
Q ss_pred CCEEEccCCCCC
Q 007372 415 LTALNLTGADIT 426 (606)
Q Consensus 415 L~~L~l~~~~i~ 426 (606)
|+.|++.+|.+.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 666666655443
No 165
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.82 E-value=0.00036 Score=70.38 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=34.3
Q ss_pred CCchhh----hHHHHHHhcCchhhhhhHHhhhHHHHhhh-ccccCC
Q 007372 2 ETVPSA----VLNKEILGRLDIEALCSLACVNRALRFSV-ESQALP 42 (606)
Q Consensus 2 ~~LP~e----vl~~~I~~~L~~~~~~~~~~vck~w~~~~-~~~~~~ 42 (606)
..||+| ++. +||+||+.++++++++|||+|+.++ ....|+
T Consensus 12 ~~lp~e~~~~~~~-~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~ 56 (435)
T 1p22_A 12 TALPARGLDHIAE-NILSYLDAKSLCAAELVCKEWYRVTSDGMLWK 56 (435)
T ss_dssp HHTGGGTCHHHHH-HHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred HHCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 469999 999 7999999999999999999999887 333444
No 166
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.72 E-value=0.00067 Score=68.56 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCCchhhhHHHHHHhcCchhhhhhHHhhhHHHHhhh
Q 007372 1 METVPSAVLNKEILGRLDIEALCSLACVNRALRFSV 36 (606)
Q Consensus 1 i~~LP~evl~~~I~~~L~~~~~~~~~~vck~w~~~~ 36 (606)
+..||+|++. +||+||+.++++++++|||+|+.++
T Consensus 19 ~~~lp~e~~~-~i~~~l~~~~l~~~~~v~~~~~~~~ 53 (445)
T 2ovr_B 19 ISLLPKELAL-YVLSFLEPKDLLQAAQTCRYWRILA 53 (445)
T ss_dssp TTSSCHHHHH-HHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred hHHCCHHHHH-HHHHhCCHHHHHHHHHHhHHHHhhc
Confidence 4579999999 7999999999999999999999887
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.56 E-value=0.066 Score=52.44 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=5.3
Q ss_pred CCCCCEEecc
Q 007372 525 SKQLRRLDLC 534 (606)
Q Consensus 525 ~~~L~~L~l~ 534 (606)
|++|+.+.+.
T Consensus 332 C~~L~~i~ip 341 (379)
T 4h09_A 332 CKALSTISYP 341 (379)
T ss_dssp CTTCCCCCCC
T ss_pred CCCCCEEEEC
Confidence 5555555553
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.48 E-value=0.13 Score=50.38 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=6.8
Q ss_pred cccCCCCCCEEEccC
Q 007372 408 SISCLRKLTALNLTG 422 (606)
Q Consensus 408 ~l~~~~~L~~L~l~~ 422 (606)
++..|++|+.+.+.+
T Consensus 281 aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 281 LCSGCSNLTKVVMDN 295 (379)
T ss_dssp TTTTCTTCCEEEECC
T ss_pred ccccccccccccccc
Confidence 334444444444443
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.00 E-value=0.41 Score=38.23 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=27.5
Q ss_pred CCCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCC
Q 007372 526 KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 568 (606)
Q Consensus 526 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 568 (606)
++|++|+|++| .++......+. .+++|+.|+|++|+..-+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~--~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLD--ALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGG--GCTTCCEEECCSSCCBCS
T ss_pred cCCCEEECCCC-cCCccChhhhh--hccccCEEEecCCCeecc
Confidence 36888888888 46665444443 467888888888887644
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=74.35 E-value=2.1 Score=34.05 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=22.5
Q ss_pred CCcEEEccCCCCCChHHHHcccCCCCCCEEEccCCCC
Q 007372 389 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 425 (606)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 425 (606)
+|+.|+|++| .++......+..+++|+.|+|.+|.+
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 5777777766 55554444555666777777777644
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.83 E-value=22 Score=26.44 Aligned_cols=39 Identities=21% Similarity=0.104 Sum_probs=23.2
Q ss_pred HhcCCCCCcEEEccCCCCCChHHHHcccCCCCCCEEEccCC
Q 007372 383 KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA 423 (606)
Q Consensus 383 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 423 (606)
.+.+|.+|+.+.|... ++..+-.++..|.+|+.+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 3455667777776542 44444455666777777766653
Done!