Query 007373
Match_columns 606
No_of_seqs 272 out of 556
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 00:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 3.8E-56 1.3E-60 467.4 25.2 312 164-499 16-353 (360)
2 3i2d_A E3 SUMO-protein ligase 100.0 9.9E-55 3.4E-59 457.7 23.5 264 170-455 69-340 (371)
3 2rno_A Putative DNA-binding pr 100.0 5.5E-33 1.9E-37 239.0 10.2 101 2-104 8-110 (110)
4 1v66_A Protein inhibitor of ac 99.6 9.4E-16 3.2E-20 122.6 6.7 63 1-75 1-63 (65)
5 2rsd_A E3 SUMO-protein ligase 99.4 4.4E-14 1.5E-18 115.9 4.1 66 106-172 3-68 (68)
6 1wew_A DNA-binding family prot 99.4 4.4E-13 1.5E-17 112.7 5.2 71 103-173 6-76 (78)
7 3o70_A PHD finger protein 13; 98.8 1.6E-09 5.6E-14 88.8 3.8 53 109-169 15-67 (68)
8 3o7a_A PHD finger protein 13 v 98.8 1.6E-09 5.4E-14 84.2 2.5 48 113-168 4-51 (52)
9 3htk_C E3 SUMO-protein ligase 98.7 5.4E-09 1.8E-13 106.1 5.3 77 350-428 170-248 (267)
10 1weu_A Inhibitor of growth fam 98.7 1.6E-08 5.6E-13 87.4 7.0 64 99-170 22-86 (91)
11 2lv9_A Histone-lysine N-methyl 98.7 1.3E-08 4.3E-13 89.1 5.3 53 110-170 25-77 (98)
12 1wee_A PHD finger family prote 98.7 8.9E-09 3E-13 85.0 3.2 54 110-170 13-67 (72)
13 1wep_A PHF8; structural genomi 98.6 1.6E-08 5.4E-13 85.0 2.7 59 110-174 9-68 (79)
14 3kqi_A GRC5, PHD finger protei 98.6 1E-08 3.5E-13 85.4 1.5 59 110-174 7-66 (75)
15 2g6q_A Inhibitor of growth pro 98.6 1.7E-08 5.9E-13 81.3 2.8 54 109-170 7-61 (62)
16 3c6w_A P28ING5, inhibitor of g 98.6 2.4E-08 8.1E-13 79.7 2.7 53 109-169 5-58 (59)
17 1we9_A PHD finger family prote 98.5 4.4E-08 1.5E-12 78.8 3.1 54 111-170 4-59 (64)
18 1wem_A Death associated transc 98.5 3.6E-09 1.2E-13 88.2 -3.4 55 113-169 16-70 (76)
19 1wen_A Inhibitor of growth fam 98.5 1.1E-07 3.8E-12 78.5 5.5 54 109-170 12-66 (71)
20 2vnf_A ING 4, P29ING4, inhibit 98.4 7.1E-08 2.4E-12 77.1 2.6 53 109-169 6-59 (60)
21 1x4i_A Inhibitor of growth pro 98.4 1.2E-07 4.2E-12 78.1 2.6 52 110-169 3-55 (70)
22 2jmi_A Protein YNG1, ING1 homo 98.2 4.5E-07 1.5E-11 78.2 3.4 51 109-167 22-74 (90)
23 2k16_A Transcription initiatio 98.1 1.6E-06 5.5E-11 71.8 2.9 52 111-169 16-68 (75)
24 2ri7_A Nucleosome-remodeling f 98.0 6.2E-07 2.1E-11 85.3 -0.5 56 109-170 4-60 (174)
25 3kv5_D JMJC domain-containing 98.0 9.9E-07 3.4E-11 97.1 0.2 56 109-170 33-89 (488)
26 2rnn_A E3 SUMO-protein ligase 97.9 1.1E-05 3.7E-10 72.2 6.3 46 4-49 30-75 (114)
27 3kv4_A PHD finger protein 8; e 97.9 1E-06 3.5E-11 95.9 -1.3 55 111-171 3-58 (447)
28 2kgg_A Histone demethylase jar 97.9 1.5E-06 5.1E-11 67.3 -0.0 48 114-167 4-52 (52)
29 2do1_A Nuclear protein HCC-1; 97.8 1.7E-05 5.7E-10 62.4 3.7 38 11-48 10-47 (55)
30 1zrj_A E1B-55KDA-associated pr 97.7 3.9E-05 1.3E-09 59.2 4.6 38 11-48 10-47 (50)
31 1h1j_S THO1 protein; SAP domai 97.5 6.4E-05 2.2E-09 58.2 4.1 38 11-48 5-42 (51)
32 2kvu_A MKL/myocardin-like prot 97.5 6.7E-05 2.3E-09 62.3 3.9 40 10-49 25-64 (75)
33 2xb1_A Pygopus homolog 2, B-ce 97.2 9.5E-05 3.2E-09 65.3 2.0 54 116-170 7-62 (105)
34 1jjr_A KU70, thyroid autoantig 97.2 0.0002 6.9E-09 67.1 4.1 39 10-48 60-98 (151)
35 2yu4_A E3 SUMO-protein ligase 97.1 0.00042 1.4E-08 59.4 4.8 69 359-429 5-80 (94)
36 3lqh_A Histone-lysine N-methyl 97.1 3.3E-05 1.1E-09 74.7 -2.6 54 115-170 4-64 (183)
37 2vpb_A Hpygo1, pygopus homolog 97.0 0.00017 5.8E-09 58.4 1.1 53 113-167 9-64 (65)
38 2kr4_A Ubiquitin conjugation f 96.9 0.00068 2.3E-08 57.1 3.9 66 358-428 11-76 (85)
39 3pur_A Lysine-specific demethy 96.8 0.00041 1.4E-08 76.5 2.3 41 123-169 54-94 (528)
40 2l43_A N-teminal domain from h 96.8 0.00062 2.1E-08 58.2 2.9 55 113-176 26-82 (88)
41 2ku3_A Bromodomain-containing 96.7 0.00056 1.9E-08 56.3 2.3 51 114-173 18-70 (71)
42 1wgm_A Ubiquitin conjugation f 96.6 0.0028 9.7E-08 54.9 6.2 66 358-428 19-85 (98)
43 1f62_A Transcription factor WS 96.6 0.0011 3.7E-08 50.6 2.9 45 117-168 5-49 (51)
44 2bay_A PRE-mRNA splicing facto 96.5 0.00078 2.7E-08 53.6 1.9 53 360-416 2-54 (61)
45 2e6r_A Jumonji/ARID domain-con 96.5 0.0016 5.5E-08 56.1 3.7 52 111-169 14-66 (92)
46 2kre_A Ubiquitin conjugation f 96.3 0.0038 1.3E-07 54.3 5.0 66 358-428 26-91 (100)
47 2l5u_A Chromodomain-helicase-D 96.3 0.003 1E-07 50.3 3.9 52 108-169 6-58 (61)
48 1xwh_A Autoimmune regulator; P 96.2 0.0032 1.1E-07 50.8 3.6 48 113-170 8-56 (66)
49 3ztg_A E3 ubiquitin-protein li 96.1 0.0052 1.8E-07 51.6 4.7 67 361-430 13-81 (92)
50 1t1h_A Gspef-atpub14, armadill 96.1 0.004 1.4E-07 50.7 3.7 64 361-428 8-71 (78)
51 4gne_A Histone-lysine N-methyl 96.0 0.0053 1.8E-07 54.4 4.4 47 111-167 13-60 (107)
52 2f42_A STIP1 homology and U-bo 95.9 0.0065 2.2E-07 58.5 4.8 66 359-428 104-169 (179)
53 2lri_C Autoimmune regulator; Z 95.8 0.0076 2.6E-07 48.8 4.1 47 113-169 12-59 (66)
54 3asl_A E3 ubiquitin-protein li 95.5 0.0083 2.9E-07 49.0 3.3 46 117-168 23-68 (70)
55 2ckl_B Ubiquitin ligase protei 95.5 0.0098 3.4E-07 55.5 4.2 70 356-429 49-120 (165)
56 2y43_A E3 ubiquitin-protein li 95.4 0.02 6.8E-07 48.7 5.6 68 358-430 19-87 (99)
57 2yt5_A Metal-response element- 95.4 0.011 3.7E-07 47.3 3.6 53 114-170 7-62 (66)
58 2puy_A PHD finger protein 21A; 95.2 0.009 3.1E-07 47.1 2.5 45 114-168 6-51 (60)
59 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.1 0.0011 3.8E-08 59.1 -3.5 41 126-168 1-43 (140)
60 3rsn_A SET1/ASH2 histone methy 95.0 0.014 4.9E-07 56.0 3.8 54 112-168 4-58 (177)
61 3lrq_A E3 ubiquitin-protein li 95.0 0.015 5.2E-07 49.9 3.7 69 358-430 19-88 (100)
62 2e6s_A E3 ubiquitin-protein li 94.9 0.017 5.8E-07 48.1 3.6 46 117-168 31-76 (77)
63 2c2l_A CHIP, carboxy terminus 94.9 0.017 5.8E-07 57.3 4.0 64 360-428 207-271 (281)
64 1mm2_A MI2-beta; PHD, zinc fin 94.8 0.02 6.7E-07 45.5 3.5 47 113-169 9-56 (61)
65 2yql_A PHD finger protein 21A; 94.7 0.02 7E-07 44.5 3.4 46 113-168 9-55 (56)
66 3fl2_A E3 ubiquitin-protein li 94.6 0.033 1.1E-06 49.4 4.7 66 358-428 49-116 (124)
67 2ckl_A Polycomb group ring fin 94.5 0.049 1.7E-06 47.1 5.6 67 357-428 11-82 (108)
68 1jm7_B BARD1, BRCA1-associated 94.5 0.022 7.5E-07 50.2 3.4 64 359-429 20-84 (117)
69 1z6u_A NP95-like ring finger p 94.3 0.04 1.4E-06 51.0 4.8 66 359-429 76-143 (150)
70 3shb_A E3 ubiquitin-protein li 93.9 0.032 1.1E-06 46.5 3.1 46 117-168 31-76 (77)
71 3hct_A TNF receptor-associated 93.9 0.044 1.5E-06 48.3 4.2 68 357-429 14-82 (118)
72 2ecy_A TNF receptor-associated 93.8 0.044 1.5E-06 43.0 3.5 52 359-415 13-65 (66)
73 1jm7_A BRCA1, breast cancer ty 93.6 0.04 1.4E-06 47.5 3.2 57 361-420 21-78 (112)
74 2ecw_A Tripartite motif-contai 93.2 0.016 5.4E-07 47.2 0.0 62 359-421 17-80 (85)
75 2kwj_A Zinc finger protein DPF 93.2 0.043 1.5E-06 48.7 2.8 46 117-169 63-108 (114)
76 1fp0_A KAP-1 corepressor; PHD 92.9 0.11 3.8E-06 44.4 4.8 47 113-169 25-72 (88)
77 3ask_A E3 ubiquitin-protein li 92.8 0.059 2E-06 53.6 3.4 46 117-168 179-224 (226)
78 2ysm_A Myeloid/lymphoid or mix 92.4 0.082 2.8E-06 46.4 3.5 51 115-172 56-107 (111)
79 2djb_A Polycomb group ring fin 92.4 0.084 2.9E-06 42.2 3.3 53 359-416 13-66 (72)
80 2ysl_A Tripartite motif-contai 92.0 0.13 4.4E-06 40.8 4.0 56 358-416 17-73 (73)
81 2csy_A Zinc finger protein 183 92.0 0.36 1.2E-05 39.3 6.7 57 360-423 14-71 (81)
82 2jx3_A Protein DEK; alpha heli 91.8 0.16 5.6E-06 46.4 4.9 46 5-50 66-111 (131)
83 3hcs_A TNF receptor-associated 91.5 0.14 4.7E-06 47.7 4.2 68 356-428 13-81 (170)
84 3o36_A Transcription intermedi 90.8 0.15 5.1E-06 48.5 3.7 46 115-170 6-52 (184)
85 2ecv_A Tripartite motif-contai 90.6 0.32 1.1E-05 39.3 5.0 62 358-420 16-79 (85)
86 2yur_A Retinoblastoma-binding 90.6 0.11 3.8E-06 41.8 2.2 51 359-412 13-64 (74)
87 1rmd_A RAG1; V(D)J recombinati 90.5 0.19 6.5E-06 43.8 3.8 66 358-428 20-87 (116)
88 3l11_A E3 ubiquitin-protein li 90.4 0.14 4.7E-06 44.6 2.8 64 361-428 15-85 (115)
89 3v43_A Histone acetyltransfera 89.7 0.24 8.1E-06 43.7 3.7 45 117-168 66-111 (112)
90 2egp_A Tripartite motif-contai 89.2 0.022 7.6E-07 46.0 -3.1 57 361-420 12-73 (79)
91 1wev_A Riken cDNA 1110020M19; 88.8 0.23 7.8E-06 42.2 2.8 53 114-170 17-73 (88)
92 4bbq_A Lysine-specific demethy 88.3 0.2 6.7E-06 44.2 2.2 42 125-169 73-114 (117)
93 3u5n_A E3 ubiquitin-protein li 88.1 0.27 9.1E-06 47.8 3.2 47 114-170 8-55 (207)
94 4ayc_A E3 ubiquitin-protein li 87.8 0.26 8.9E-06 44.5 2.7 59 361-425 53-114 (138)
95 3knv_A TNF receptor-associated 87.5 0.13 4.5E-06 47.1 0.6 72 352-428 22-103 (141)
96 1g25_A CDK-activating kinase a 85.7 0.59 2E-05 36.3 3.4 52 362-417 4-60 (65)
97 2ect_A Ring finger protein 126 85.6 0.38 1.3E-05 38.7 2.3 51 361-416 15-68 (78)
98 1chc_A Equine herpes virus-1 r 85.2 0.55 1.9E-05 36.6 3.0 45 362-411 6-51 (68)
99 2xeu_A Ring finger protein 4; 84.4 0.44 1.5E-05 36.4 2.1 50 362-416 4-60 (64)
100 3ng2_A RNF4, snurf, ring finge 84.2 0.5 1.7E-05 37.0 2.4 50 362-416 11-67 (71)
101 2ysm_A Myeloid/lymphoid or mix 83.7 1.2 4E-05 38.9 4.8 47 114-167 8-55 (111)
102 2ro1_A Transcription intermedi 83.7 0.62 2.1E-05 44.8 3.2 45 115-169 4-49 (189)
103 2d8t_A Dactylidin, ring finger 82.4 0.35 1.2E-05 38.4 0.8 49 361-414 15-63 (71)
104 1x4j_A Ring finger protein 38; 81.5 0.65 2.2E-05 37.1 2.1 47 362-413 24-73 (75)
105 2ct2_A Tripartite motif protei 81.4 1.2 3.9E-05 36.3 3.6 51 361-414 15-70 (88)
106 2ecm_A Ring finger and CHY zin 81.1 1.2 4.2E-05 33.0 3.4 43 363-410 7-53 (55)
107 1bor_A Transcription factor PM 77.7 0.9 3.1E-05 34.6 1.7 45 362-414 7-51 (56)
108 2ep4_A Ring finger protein 24; 77.1 1.2 4E-05 35.4 2.3 46 361-411 15-63 (74)
109 2do5_A Splicing factor 3B subu 77.0 2.7 9.2E-05 32.2 4.0 32 15-46 12-43 (58)
110 2ysj_A Tripartite motif-contai 76.7 1.8 6.1E-05 33.2 3.2 46 358-406 17-63 (63)
111 2ecj_A Tripartite motif-contai 74.9 3.1 0.00011 30.9 4.1 45 359-406 13-58 (58)
112 4ap4_A E3 ubiquitin ligase RNF 74.9 1.7 5.8E-05 37.8 2.9 51 361-416 7-64 (133)
113 2kiz_A E3 ubiquitin-protein li 70.7 2.3 7.9E-05 33.1 2.5 47 361-412 14-63 (69)
114 1a62_A RHO; transcription term 69.9 3.7 0.00013 37.2 4.0 39 9-47 4-44 (130)
115 1e4u_A Transcriptional repress 69.5 5.6 0.00019 32.6 4.7 51 362-415 12-65 (78)
116 1v87_A Deltex protein 2; ring- 68.3 2.8 9.6E-05 36.0 2.8 49 363-411 27-93 (114)
117 2ea6_A Ring finger protein 4; 66.1 3 0.0001 32.0 2.3 47 360-411 14-67 (69)
118 1iym_A EL5; ring-H2 finger, ub 66.1 5.4 0.00018 29.4 3.6 45 362-411 6-54 (55)
119 2ecg_A Baculoviral IAP repeat- 64.9 1.9 6.5E-05 34.6 0.9 46 358-412 22-68 (75)
120 3v43_A Histone acetyltransfera 64.2 0.68 2.3E-05 40.7 -2.1 40 124-167 23-62 (112)
121 1kcf_A Hypothetical 30.2 KD pr 62.7 5.2 0.00018 40.4 3.8 33 12-44 2-34 (258)
122 4ic3_A E3 ubiquitin-protein li 61.9 2 6.8E-05 34.5 0.5 42 361-411 24-66 (74)
123 1y02_A CARP2, FYVE-ring finger 61.1 10 0.00036 33.9 5.1 39 8-46 73-113 (120)
124 4ap4_A E3 ubiquitin ligase RNF 60.9 3.2 0.00011 35.9 1.7 50 362-416 73-129 (133)
125 2vje_B MDM4 protein; proto-onc 57.3 4.2 0.00014 31.7 1.6 44 363-410 9-54 (63)
126 2riq_A Poly [ADP-ribose] polym 56.9 11 0.00039 35.3 4.8 46 2-47 29-75 (160)
127 2ecl_A Ring-box protein 2; RNF 56.8 4.9 0.00017 32.7 2.1 32 379-415 47-79 (81)
128 2ecn_A Ring finger protein 141 53.8 2.5 8.7E-05 32.9 -0.2 48 361-414 15-62 (70)
129 2vje_A E3 ubiquitin-protein li 50.6 7.1 0.00024 30.4 2.0 45 363-411 10-56 (64)
130 2kwj_A Zinc finger protein DPF 47.5 5.1 0.00017 35.2 0.7 40 124-167 20-59 (114)
131 2l0b_A E3 ubiquitin-protein li 45.6 10 0.00035 31.3 2.3 47 361-412 40-89 (91)
132 2yrc_A Protein transport prote 45.5 2.6 9E-05 33.2 -1.3 14 396-409 29-42 (59)
133 1zbh_A 3'-5' exonuclease ERI1; 43.6 25 0.00087 35.4 5.3 44 4-47 19-62 (299)
134 3vk6_A E3 ubiquitin-protein li 43.1 11 0.00038 32.9 2.1 44 364-410 4-47 (101)
135 2yho_A E3 ubiquitin-protein li 43.1 6.1 0.00021 32.2 0.5 41 362-411 19-60 (79)
136 1wim_A KIAA0161 protein; ring 42.4 5.8 0.0002 33.0 0.3 54 361-414 5-68 (94)
137 2e61_A Zinc finger CW-type PWW 42.2 16 0.00054 29.7 2.8 40 125-175 16-55 (69)
138 1weq_A PHD finger protein 7; s 41.2 24 0.0008 29.8 3.8 47 112-168 25-78 (85)
139 6rxn_A Rubredoxin; electron tr 41.1 7.1 0.00024 29.3 0.5 12 398-409 28-39 (46)
140 2j9u_B VPS36, vacuolar protein 40.6 8.4 0.00029 31.9 1.0 10 398-407 15-24 (76)
141 2ea5_A Cell growth regulator w 40.4 15 0.0005 29.0 2.4 41 362-411 16-57 (68)
142 3t6p_A Baculoviral IAP repeat- 40.3 6.6 0.00022 41.1 0.3 44 359-411 293-337 (345)
143 2k5c_A Uncharacterized protein 35.9 4.5 0.00015 34.0 -1.4 16 401-416 9-24 (95)
144 4rxn_A Rubredoxin; electron tr 33.2 11 0.00038 29.1 0.5 12 398-409 34-45 (54)
145 2y1n_A E3 ubiquitin-protein li 33.1 16 0.00056 38.9 2.0 49 361-414 332-381 (389)
146 1e8j_A Rubredoxin; iron-sulfur 32.8 13 0.00045 28.4 0.9 12 398-409 34-45 (52)
147 2v3b_B Rubredoxin 2, rubredoxi 32.6 13 0.00043 28.8 0.8 12 398-409 34-45 (55)
148 1yk4_A Rubredoxin, RD; electro 31.5 12 0.00043 28.6 0.5 12 398-409 33-44 (52)
149 2out_A MU-like prophage flumu 31.3 27 0.00092 31.7 2.8 30 11-40 89-120 (131)
150 2kn9_A Rubredoxin; metalloprot 29.8 15 0.00051 30.8 0.8 12 398-409 58-69 (81)
151 1dx8_A Rubredoxin; electron tr 29.0 15 0.0005 29.9 0.6 12 398-409 38-49 (70)
152 2lbm_A Transcriptional regulat 26.9 34 0.0012 31.4 2.7 51 113-168 63-116 (142)
153 1s24_A Rubredoxin 2; electron 25.5 20 0.0007 30.4 0.9 12 398-409 66-77 (87)
154 3dpl_R Ring-box protein 1; ubi 24.3 36 0.0012 29.3 2.3 33 376-412 69-101 (106)
155 2jvx_A NF-kappa-B essential mo 24.2 24 0.00081 23.8 0.8 12 399-410 2-13 (28)
156 2m0e_A Zinc finger and BTB dom 23.7 30 0.001 20.3 1.2 13 400-412 2-14 (29)
157 2w51_A Protein arMet; MANF, CD 23.2 10 0.00036 35.4 -1.5 37 11-47 108-146 (158)
158 2kvh_A Zinc finger and BTB dom 23.2 24 0.00083 20.9 0.7 13 399-411 2-14 (27)
159 3l0o_A Transcription terminati 21.9 72 0.0024 34.4 4.4 38 9-46 11-50 (427)
160 1p7a_A BF3, BKLF, kruppel-like 21.6 32 0.0011 22.0 1.1 14 399-412 10-23 (37)
161 1ard_A Yeast transcription fac 21.4 32 0.0011 20.4 1.0 13 400-412 2-14 (29)
162 1klr_A Zinc finger Y-chromosom 21.4 35 0.0012 20.2 1.2 13 400-412 2-14 (30)
163 1lv3_A Hypothetical protein YA 20.6 27 0.00093 28.3 0.7 18 395-412 4-21 (68)
164 2ct0_A Non-SMC element 1 homol 20.0 86 0.0029 25.4 3.6 43 115-168 18-60 (74)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=3.8e-56 Score=467.41 Aligned_cols=312 Identities=21% Similarity=0.398 Sum_probs=212.6
Q ss_pred cccccccCCCceeeecccccceeeeeeccCCCCCCCceeeeEEEEeCHhhHhhhcCC---------CeeEEE--E-EEec
Q 007373 164 EICRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQ---------EYDVQA--W-CMLL 231 (606)
Q Consensus 164 e~CRl~r~dPF~~~i~~lL~Pv~l~~s~i~~~g~~~~Q~~~~~F~Lt~~~~~~L~~~---------~~~lql--~-C~~l 231 (606)
+.-++ +.+|||+++++|++|+.|.+++ +..+|+..|.|.||++|...++.. +|++|| | |..
T Consensus 16 ~~~~~-k~lPFy~v~~~l~~Pt~L~~~~-----~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRfC~~- 88 (360)
T 4fo9_A 16 FQGQL-KNLPFYDVLDVLIKPTSLVQSS-----IQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLA- 88 (360)
T ss_dssp -CCCB-CCCTTEEEEEEEEEEEECCCCS-----SCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEEEEC-
T ss_pred CCcee-cCCCchHhHhhhcCceeccccc-----CcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEEEEc-
Confidence 34466 5689999999999999998653 567899999999999999888632 355554 4 766
Q ss_pred CCCCcccccCCCccEEEEcCeEeecccCCCCCCCCCC-CCCCCCC-cccCcCCC---ccEEEEEEe-c-CceEEEEEEEE
Q 007373 232 NDKVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGAN-GRDDGPI-ITPWTKDG---INKIVLTGC-D-ARIFCLGVRIV 304 (606)
Q Consensus 232 ~d~~~~~~~wP~~~~I~VNg~~v~~~~Rp~~~~~g~~-gR~~~pi-IT~~lk~g---~N~I~is~~-d-~~~y~~~V~lV 304 (606)
++..++++.||.+++|+|||+.|+..+.-..++.|.. +|...|+ ||++++.+ .|+|+|+|. + .+.|+++||+|
T Consensus 89 ~~~~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~lV 168 (360)
T 4fo9_A 89 ETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLV 168 (360)
T ss_dssp -C-CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEEEE
T ss_pred cCCCcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEEEE
Confidence 4567889999999999999999997532112334443 5566666 99999987 599999997 3 68999999999
Q ss_pred EecCHHHHHhhcccCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCCcceEeeeceeeecCCCCcccccccccCCCCCccc
Q 007373 305 KRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMG 384 (606)
Q Consensus 305 k~~s~e~Ll~~I~~~~~~~~~e~al~rIkr~l~~~~~~~~~d~DdD~eIv~~s~~isL~CPls~~ri~~P~Rg~~C~HlQ 384 (606)
+++++++|+++|+++ ...+.++++++|++.+.. |+|.||+++++.|||+||||++||++|+||..|.|+|
T Consensus 169 ~~~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~~---------d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~Hlq 238 (360)
T 4fo9_A 169 RQLTSAMLLQRLKMK-GIRNPDHSRALIKEKLTA---------DPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQ 238 (360)
T ss_dssp EECCHHHHHHHHHTC--CBCHHHHHHHHHHHHC------------------CCEEEESBCTTTCSBCSSEEEETTCCCCC
T ss_pred EeCCHHHHHHHHHhc-CCCCHHHHHHHHHHHhcc---------CCccceeeeeeEEeeeCCCccceeccCCcCCCCCCCc
Confidence 999999999999864 356788999999998842 3344688899999999999999999999999999999
Q ss_pred cccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhhcCCCCeeEEEEccCCceEeccCCCcccccccccCC
Q 007373 385 CFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMRNCGEDITELEVKPDGSWRVKTRSESDRREIGDLAS 464 (606)
Q Consensus 385 CFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L~~~~~dv~eV~v~~DGsW~~~~e~e~~~~d~~~~~~ 464 (606)
||||++||+|+++.++|+||||++.+.+++|+||+||++||+ .+ .++++|+|++||+|++..+..+ ..|+ ...|
T Consensus 239 CFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~---~~-~~v~~I~v~~DGsW~p~~~k~e-~~~~-~~~~ 312 (360)
T 4fo9_A 239 CFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN---DC-SDVDEIKFQEDGSWCPMRPKKE-AMKV-SSQP 312 (360)
T ss_dssp CEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT---TC-SSCCEEEECC-CCEEC----------------
T ss_pred cCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH---hC-CCCCEEEECCCCceecCCCCcc-cccc-cCCC
Confidence 999999999999999999999999999999999999999964 44 4899999999999998765543 3343 5567
Q ss_pred CCCCCCCCccC-------CCCCCCchhhhhhhhhccccCCCC
Q 007373 465 WHFPDGSLCAP-------AGGEDKPKVEMLKHVRQEGVSEGH 499 (606)
Q Consensus 465 ~~~~dg~~~~~-------~~~~~~~~~~~~~~~~~e~~~~~~ 499 (606)
|...||...++ +....+++++++ .|+-|.+||..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~s~~~ 353 (360)
T 4fo9_A 313 CTKIESSSVLSKPCSVTVASEASKKKVDVI-DLTIESSSDEE 353 (360)
T ss_dssp ------------------------------------------
T ss_pred CCCcccccccccccccCCCccccCCCccEE-EecccCccccC
Confidence 77777765532 122234467776 57777776654
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-55 Score=457.73 Aligned_cols=264 Identities=22% Similarity=0.374 Sum_probs=217.9
Q ss_pred cCCCceeeecccccceeeeeeccCCCCCCCceeeeEEEEeCHhhHhhhcC--CCeeEEEEEEecCCC---CcccccCCCc
Q 007373 170 RADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSK--QEYDVQAWCMLLNDK---VPFRMQWPQY 244 (606)
Q Consensus 170 r~dPF~~~i~~lL~Pv~l~~s~i~~~g~~~~Q~~~~~F~Lt~~~~~~L~~--~~~~lql~C~~l~d~---~~~~~~wP~~ 244 (606)
+..|||+.+..+-........ ...+..+.+.|+|+++++++|++ ++|+|+|||+..++. ...+++||..
T Consensus 69 k~SPFY~i~~~i~~~~~~~~~------~~~R~~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~fP~~ 142 (371)
T 3i2d_A 69 KESPFYKIQRLIPELVMNVEV------TGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFP 142 (371)
T ss_dssp CCBTTEEEEEEEEEEEEEECC------EEEEEEEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCCCCSS
T ss_pred cCCCCceeeeecCCccccccc------cCCCCEEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCeecCCc
Confidence 789999977654433222211 12355788999999999999983 689999999998752 3457999999
Q ss_pred cEEEEcCeEeecccCCCCCCCCCCCCCCCCCcccCcCCC--ccEEEEEEe-cCceEEEEEEEEEecCHHHHHhhcccCCC
Q 007373 245 ADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDG--INKIVLTGC-DARIFCLGVRIVKRRSVQQVLNLIPKESE 321 (606)
Q Consensus 245 ~~I~VNg~~v~~~~Rp~~~~~g~~gR~~~piIT~~lk~g--~N~I~is~~-d~~~y~~~V~lVk~~s~e~Ll~~I~~~~~ 321 (606)
++|+|||..|+.+.|+. ++++|+..|.+||++|+.+ .|+|+|+|. +.+.|+++||+|+++++++|++.|.+++
T Consensus 143 ~eI~VNg~~vk~n~rGl---Knk~Gt~~PvDIT~~lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~~~~- 218 (371)
T 3i2d_A 143 NELRCNNVQIKDNIRGF---KSKPGTAKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHP- 218 (371)
T ss_dssp EEEEETTEECCSCCSSC---TTSCGGGSCEECGGGCCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHHTSC-
T ss_pred eEEEECCEEeccccccC---CCCCCCcCCCCchhhhccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHHhcC-
Confidence 99999999999877764 3466777777799999975 799999996 6789999999999999999999998753
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCCCCCCCCcceEeeeceeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCee
Q 007373 322 GEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKW 401 (606)
Q Consensus 322 ~~~~e~al~rIkr~l~~~~~~~~~d~DdD~eIv~~s~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W 401 (606)
.++.++++++|++.++. |+|.||+++++.|||+||||++||++|+||..|.|+|||||++||+|+++.++|
T Consensus 219 ~i~~e~tl~~Ik~~ls~---------d~DdDIv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W 289 (371)
T 3i2d_A 219 KIIKQATLLYLKKTLRE---------DEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTW 289 (371)
T ss_dssp CBCHHHHHHHHHHHHHS---------CC------CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHhcc---------CCCCceeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCce
Confidence 56778899999998852 233458889999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCeeecHHHHHHHHHhhcCCCCeeEEEEccCCceEeccCCCcc
Q 007373 402 QCPICLRNYSLENIIIDPYFNRITSKMRNCGEDITELEVKPDGSWRVKTRSESD 455 (606)
Q Consensus 402 ~CPiC~k~~~~~~L~ID~y~~~IL~~L~~~~~dv~eV~v~~DGsW~~~~e~e~~ 455 (606)
+||||++.+.+++|+||+||++|| +.+++++++|+|++||+|++..+++++
T Consensus 290 ~CPIC~k~~~~~dL~ID~~~~~IL---~~~~~dve~V~v~~DGsW~p~~e~~~d 340 (371)
T 3i2d_A 290 QCPVCQIDIALENLAISEFVDDIL---QNCQKNVEQVELTSDGKWTAILEDDDD 340 (371)
T ss_dssp BCTTTCCBCCGGGEEEBHHHHHHH---TTSCTTCCEEEEETTSCEEECC-----
T ss_pred eCCCCCcccCHHHeeEcHHHHHHH---HhccCCccEEEECCCCCEEeccCCcCC
Confidence 999999999999999999999994 566889999999999999999988654
No 3
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=99.98 E-value=5.5e-33 Score=239.04 Aligned_cols=101 Identities=57% Similarity=0.875 Sum_probs=96.6
Q ss_pred ccHHHHHHHHhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccchhhc--cccCCCCcHHHHHHHHHHHHHhhccc
Q 007373 2 DSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKM--WAKKSPVSKEEVAKLVDDTHRKLQVS 79 (606)
Q Consensus 2 ~~~~~~k~~L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~~~~~~~--~~~~~~~~~~~v~k~I~~~Yr~m~~~ 79 (606)
||+++||.+|+||||+|||++|++||||||||||+||||||++|++++.++. |++|+++++|+|+|+|||+|||||++
T Consensus 8 dl~~~Ck~kl~~frikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~~~~~~~K~~v~kE~vaKIVDDtYRKMqvS 87 (110)
T 2rno_A 8 DLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTYRKMQIQ 87 (110)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTTSCCCSTTGGGSHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcccccccccccccHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999999999999999999875 89999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCCcccccccc
Q 007373 80 VAPDLASKGGQGVSNSSNIKIKGEM 104 (606)
Q Consensus 80 ~~~~~~s~~~~~~~~~s~~~~~~~~ 104 (606)
||+++|+++ |+++++| ++|++|+
T Consensus 88 gAtDLASk~-q~~sd~s-~k~k~E~ 110 (110)
T 2rno_A 88 CAPDLATRS-HSGSDFS-FRPIEEA 110 (110)
T ss_dssp TCCCSCTTC-SSCSSSC-SCCCTTC
T ss_pred CCccccccC-ccccCcc-cccCCCC
Confidence 999999999 9999987 8887753
No 4
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.60 E-value=9.4e-16 Score=122.60 Aligned_cols=63 Identities=25% Similarity=0.406 Sum_probs=57.4
Q ss_pred CccHHHHHHHHhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccchhhccccCCCCcHHHHHHHHHHHHHh
Q 007373 1 MDSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRK 75 (606)
Q Consensus 1 ~~~~~~~k~~L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~~~~~~~~~~~~~~~~~~v~k~I~~~Yr~ 75 (606)
|.-...+++||.+|||+|||.+|+++|++|+|||+||+.|+|.||....+ +.|..+|+|+|++
T Consensus 1 ~~~~~el~~Mv~sfRVsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~~~s------------~~v~~KIrELy~~ 63 (65)
T 1v66_A 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCS------------PAVQMKIKELYRR 63 (65)
T ss_dssp CCCTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCC------------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHcCCC------------HHHHHHHHHHHHh
Confidence 45567899999999999999999999999999999999999999999875 4688889999975
No 5
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.44 E-value=4.4e-14 Score=115.88 Aligned_cols=66 Identities=59% Similarity=1.238 Sum_probs=57.1
Q ss_pred ccCCCCCceeccCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCC
Q 007373 106 DYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRAD 172 (606)
Q Consensus 106 ~~~q~~~~~rCiCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r~d 172 (606)
++.+++..+||+|+.....+.||+|++.+|..|||..||++..++... ..+|.+|||+.||+.|+|
T Consensus 3 d~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~-~~~p~~~~C~~Cr~~r~D 68 (68)
T 2rsd_A 3 DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGES-AEVPPVFYCELCRLSRAD 68 (68)
T ss_dssp SCCCSSCEECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSC-CCCCSSCCCHHHHHHHTC
T ss_pred CCcCCCCCEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccc-cCCCCcEECcCccCcccC
Confidence 456788899999999888899999997789999999999998776443 356789999999998876
No 6
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.36 E-value=4.4e-13 Score=112.75 Aligned_cols=71 Identities=62% Similarity=1.290 Sum_probs=60.5
Q ss_pred cccccCCCCCceeccCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCC
Q 007373 103 EMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADP 173 (606)
Q Consensus 103 ~~~~~~q~~~~~rCiCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r~dP 173 (606)
+.++.+.++..+||+|+.....+.||+|+++.|..|||..||+++.+++.+.+..+.+|||+.|+..+.+|
T Consensus 6 ~~dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 6 SGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCSSSCCCCCCCSSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred ccccccCCCCCEEeECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 34566778889999999987889999999666999999999999988765556678999999999987665
No 7
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=88.80 Aligned_cols=53 Identities=38% Similarity=0.837 Sum_probs=45.2
Q ss_pred CCCCceeccCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 109 QSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 109 q~~~~~rCiCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
++...++|+|+.....+.||+|+. |..|||..||++...+ +|+.|+|+.|+..
T Consensus 15 ~~~~~~~CiC~~~~~~~~MIqCd~--C~~WfH~~Cvgi~~~~------~~~~~~C~~C~~s 67 (68)
T 3o70_A 15 YFQGLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRDS 67 (68)
T ss_dssp TTTTCCCSTTCCCCTTCCEEECTT--TCCEEETTTTTCCTTS------CCSSCCCHHHHTC
T ss_pred CCCCceEeECCCcCCCCCEEECCC--CCccccccccCcCccc------CCCcEECCCCCCC
Confidence 356689999999777678999999 9999999999998653 4689999999864
No 8
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.80 E-value=1.6e-09 Score=84.16 Aligned_cols=48 Identities=40% Similarity=0.941 Sum_probs=42.0
Q ss_pred ceeccCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 113 KVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 113 ~~rCiCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
.+||+|+.....+.||+|+. |..|||..||+++..+ +|+.|+|+.|+.
T Consensus 4 ~~~C~C~~~~~~~~MI~Cd~--C~~W~H~~Cvgi~~~~------~~~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBCTTCCEEECTT--TCCEEETTTTTCCGGG------CCSSCCCHHHHT
T ss_pred CeEEEeCCcCCCCCEEEcCC--CCccccccccCCCccc------CCCcEECcCCCC
Confidence 58999999777779999999 9999999999998653 468999999974
No 9
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.75 E-value=5.4e-09 Score=106.10 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=68.6
Q ss_pred CcceEeeeceeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccC--CCCCCCCCCeeecHHHHHHHHH
Q 007373 350 DLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPI--CLRNYSLENIIIDPYFNRITSK 427 (606)
Q Consensus 350 D~eIv~~s~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPi--C~k~~~~~~L~ID~y~~~IL~~ 427 (606)
|.+|+++...++|+|||++..|+.|+++..|.|. |+-..+.++-+..+.|.||+ |.+.+...+|+.|..+.++++.
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHs--FcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEAPLISRKCNHV--FDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCE--EEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred CccceecCCceeeECcCccCcccCCeeeCCCCCc--ccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 3356778899999999999999999999999996 99999998877778899999 9999999999999999888764
Q ss_pred h
Q 007373 428 M 428 (606)
Q Consensus 428 L 428 (606)
.
T Consensus 248 ~ 248 (267)
T 3htk_C 248 A 248 (267)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.73 E-value=1.6e-08 Score=87.39 Aligned_cols=64 Identities=25% Similarity=0.653 Sum_probs=49.4
Q ss_pred cccccccccCCCCCceeccCCCCcCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 99 KIKGEMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 99 ~~~~~~~~~~q~~~~~rCiCg~s~~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
.|.........++...+|+|+... ++.||+|++..|. .|+|..||++...| ..+|||+.|+..+
T Consensus 22 ~p~~~~~~~~d~~e~~yCiC~~~~-~g~MI~CD~~dC~~~WfH~~CVgl~~~p-------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 22 HPSDVLDMPVDPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 86 (91)
T ss_dssp CCCCCCSCCCCSCCCBCSTTCCBC-CSCCCCCSCSSCSCCCCCSTTTTCSSCC-------CSSCCCTTTCCCC
T ss_pred CccccccCCcCCCCCcEEECCCCC-CCCEeEecCCCCCCCCEecccCCcCcCC-------CCCEECcCccCcC
Confidence 343333444566788999999864 5899999996677 89999999998665 4689999998743
No 11
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.69 E-value=1.3e-08 Score=89.15 Aligned_cols=53 Identities=32% Similarity=0.849 Sum_probs=45.2
Q ss_pred CCCceeccCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 110 SDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 110 ~~~~~rCiCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
.+..+||+|+.....+.||+|+. |..|||..|++++... +|+.|+|+.|+..+
T Consensus 25 ~~d~vrCiC~~~~~~~~mi~Cd~--C~~w~H~~C~~~~~~~------~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 25 GTDVTRCICGFTHDDGYMICCDK--CSVWQHIDCMGIDRQH------IPDTYLCERCQPRN 77 (98)
T ss_dssp CCCBCCCTTSCCSCSSCEEEBTT--TCBEEETTTTTCCTTS------CCSSBCCTTTSSSC
T ss_pred CCCCEEeECCCccCCCcEEEcCC--CCCcCcCcCCCCCccC------CCCCEECCCCcCCC
Confidence 34579999999888899999999 9999999999986543 46789999998754
No 12
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.66 E-value=8.9e-09 Score=85.04 Aligned_cols=54 Identities=31% Similarity=0.758 Sum_probs=44.3
Q ss_pred CCCceeccCCCCcCCC-CeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 110 SDTKVCCPCGSSLETE-SMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 110 ~~~~~rCiCg~s~~~~-~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
.+..++|+|+.....+ .||+|+. |..|||..||++...+ ..|..|+|+.|+..+
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~--C~~W~H~~Cvg~~~~~-----~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDG--CGVWHHTRCIGINNAD-----ALPSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSS--SCEEEETTTTTCCTTS-----CCCSCCCCHHHHHHC
T ss_pred CCcceEeeCCCccCCCCcEEECCC--CCCccCCeeeccCccc-----cCCCcEECCCccCCC
Confidence 3458999999875444 7999998 9999999999998643 357899999998743
No 13
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.59 E-value=1.6e-08 Score=85.00 Aligned_cols=59 Identities=27% Similarity=0.531 Sum_probs=47.1
Q ss_pred CCCceeccCCCCcC-CCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCCc
Q 007373 110 SDTKVCCPCGSSLE-TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPF 174 (606)
Q Consensus 110 ~~~~~rCiCg~s~~-~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r~dPF 174 (606)
.+..++|+|+.... .+.||+|+. |..|||..||++...+.+ .+..|+|+.|+..+.-++
T Consensus 9 ~~~~~~C~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~~----~~~~~~C~~C~~~~~~~~ 68 (79)
T 1wep_A 9 ALVPVYCLCRQPYNVNHFMIECGL--CQDWFHGSCVGIEEENAV----DIDIYHCPDCEAVFGPSI 68 (79)
T ss_dssp CCCCCCSTTSCSCCSSSCEEEBTT--TCCEEEHHHHTCCHHHHT----TCSBBCCTTTTTTSCSCB
T ss_pred cCCccEEEcCCccCCCCceEEcCC--CCCcEEeeecCccccccc----CCCeEECCCcccccCCCc
Confidence 45589999999753 789999998 999999999999865421 257999999998664444
No 14
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.59 E-value=1e-08 Score=85.37 Aligned_cols=59 Identities=29% Similarity=0.679 Sum_probs=46.1
Q ss_pred CCCceeccCCCCcC-CCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCCc
Q 007373 110 SDTKVCCPCGSSLE-TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPF 174 (606)
Q Consensus 110 ~~~~~rCiCg~s~~-~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r~dPF 174 (606)
+...+||+|+.... .+.||+|+. |..|||..||++...+. +.++.|+|+.|+....-++
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~--C~~WfH~~Cvg~~~~~~----~~~~~~~C~~C~~~~~~~~ 66 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDA--CKDWFHGSCVGVEEEEA----PDIDIYHCPNCEKTHGKST 66 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCTTTG----GGBSSCCCHHHHHHHCCCC
T ss_pred CCCeeEEECCCcCCCCCCEEEcCC--CCCCEeccccccccccc----CCCCEEECCCCcccCCCCe
Confidence 34579999998643 679999998 99999999999987642 2246899999988643333
No 15
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.58 E-value=1.7e-08 Score=81.25 Aligned_cols=54 Identities=33% Similarity=0.845 Sum_probs=42.8
Q ss_pred CCCCceeccCCCCcCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 109 q~~~~~rCiCg~s~~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
.++...+|+|++. ..+.||+|++..|. .|+|..||+++..| ..+|||+.|+..+
T Consensus 7 d~~e~~yC~C~~~-~~g~MI~CD~c~C~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 7 DPNEPTYCLCNQV-SYGEMIGCDNEQCPIEWFHFSCVSLTYKP-------KGKWYCPKCRGDN 61 (62)
T ss_dssp ---CCEETTTTEE-CCSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHTCC
T ss_pred CCCCCcEEECCCC-CCCCeeeeeCCCCCcccEecccCCcCcCC-------CCCEECcCcccCC
Confidence 4567899999986 45799999995566 99999999998654 4699999998754
No 16
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.55 E-value=2.4e-08 Score=79.67 Aligned_cols=53 Identities=32% Similarity=0.824 Sum_probs=42.4
Q ss_pred CCCCceeccCCCCcCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 109 q~~~~~rCiCg~s~~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
.++...+|+|++.. .+.||+|++..|. .|+|..||+++..| .++|||+.|+..
T Consensus 5 d~~e~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 5 GSNEPTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVDLTTKP-------KGKWFCPRCVQE 58 (59)
T ss_dssp ---CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHCC
T ss_pred CCCCCcEEECCCCC-CCCeeEeeCCCCCCCCEecccCCcccCC-------CCCEECcCccCc
Confidence 35678999999864 5899999997777 79999999998765 368999999864
No 17
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.50 E-value=4.4e-08 Score=78.84 Aligned_cols=54 Identities=30% Similarity=0.624 Sum_probs=44.0
Q ss_pred CCceec-cCCCCc-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 111 DTKVCC-PCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 111 ~~~~rC-iCg~s~-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
+...+| +|+... ..+.||+|+. |..|+|..||++...+.+ .+..|+|+.|+..+
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~--C~~WfH~~Cvgl~~~~~~----~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDL--CEMWFHGKCVKITPARAE----HIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSS--SCCEEETTTTTCCTTGGG----GCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccC--CCCCCCccccCcChhHhc----CCCcEECCCCcCcC
Confidence 456899 999875 3688999998 999999999999865422 35799999998754
No 18
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.50 E-value=3.6e-09 Score=88.17 Aligned_cols=55 Identities=27% Similarity=0.541 Sum_probs=43.2
Q ss_pred ceeccCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 113 KVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rCiCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
.+||+|+.....+.||+|+. |..|||..||++...+.+.+...+..|+|+.|+..
T Consensus 16 ~~~C~C~~~~~~~~MI~Cd~--C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYCICRQPHNNRFMICCDR--CEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCSTTCCCCCSSCEEECSS--SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEEECCCccCCCCEEEeCC--CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 69999999877779999998 99999999999975431111012579999999874
No 19
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.50 E-value=1.1e-07 Score=78.53 Aligned_cols=54 Identities=28% Similarity=0.769 Sum_probs=44.4
Q ss_pred CCCCceeccCCCCcCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 109 q~~~~~rCiCg~s~~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
.++...+|+|+... .+.||.|+...|. .|+|..||++...| ..+|||+.|+..+
T Consensus 12 d~~~~~~C~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvgl~~~p-------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCSTTCCCS-CSSEECCSCSSCSCCCEETTTTTCSSCC-------SSCCCCTTTSSCS
T ss_pred CCCCCCEEECCCCC-CCCEeEeeCCCCCCccEecccCCcCcCC-------CCCEECCCCCccc
Confidence 45668999999864 4899999997777 79999999987654 3689999998643
No 20
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.43 E-value=7.1e-08 Score=77.08 Aligned_cols=53 Identities=28% Similarity=0.785 Sum_probs=41.4
Q ss_pred CCCCceeccCCCCcCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 109 q~~~~~rCiCg~s~~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
.++...+|+|+... .+.||.|+...|. .|+|..||+++..| .+.|||+.|+..
T Consensus 6 d~~e~~~C~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvgl~~~p-------~g~w~C~~C~~~ 59 (60)
T 2vnf_A 6 DPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQE 59 (60)
T ss_dssp ---CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHC-
T ss_pred CCCCCCEEECCCcC-CCCEEEeCCCCCCCceEehhcCCCCcCC-------CCCEECcCccCc
Confidence 45668999999864 5899999996666 89999999987654 368999999864
No 21
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=1.2e-07 Score=78.07 Aligned_cols=52 Identities=29% Similarity=0.751 Sum_probs=42.3
Q ss_pred CCCceeccCCCCcCCCCeeeecCCCC-CCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 110 SDTKVCCPCGSSLETESMIKCEDPRC-PVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 110 ~~~~~rCiCg~s~~~~~mI~C~~~~C-~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
++..++|+|++. ..+.||+|++..| ..|+|..||++...+ ...|||+.|+..
T Consensus 3 ~~~~~yC~C~~~-~~g~MI~CD~cdC~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 3 SGSSGYCICNQV-SYGEMVGCDNQDCPIEWFHYGCVGLTEAP-------KGKWYCPQCTAA 55 (70)
T ss_dssp CSCCCCSTTSCC-CCSSEECCSCTTCSCCCEEHHHHTCSSCC-------SSCCCCHHHHHH
T ss_pred CCCCeEEEcCCC-CCCCEeEeCCCCCCccCCcccccccCcCC-------CCCEECCCCCcc
Confidence 466899999986 4679999999444 399999999997654 569999999763
No 22
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.24 E-value=4.5e-07 Score=78.25 Aligned_cols=51 Identities=31% Similarity=0.907 Sum_probs=40.1
Q ss_pred CCCCceeccCCCCcCCCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCcccccc-cc
Q 007373 109 QSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEI-CR 167 (606)
Q Consensus 109 q~~~~~rCiCg~s~~~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~-CR 167 (606)
.++...+|+|+... ++.||.|++..|. .|+|..||++...| .+.|||+. |+
T Consensus 22 ~~~~~~yCiC~~~~-~g~MI~CD~c~C~~eWfH~~CVgl~~~p-------~~~W~Cp~cC~ 74 (90)
T 2jmi_A 22 NNQEEVYCFCRNVS-YGPMVACDNPACPFEWFHYGCVGLKQAP-------KGKWYCSKDCK 74 (90)
T ss_dssp --CCSCCSTTTCCC-SSSEECCCSSSCSCSCEETTTSSCSSCT-------TSCCCSSHHHH
T ss_pred CCCCCcEEEeCCCC-CCCEEEecCCCCccccCcCccCCCCcCC-------CCCccCChhhc
Confidence 45678999999853 4789999994444 89999999998654 36899999 96
No 23
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.06 E-value=1.6e-06 Score=71.76 Aligned_cols=52 Identities=29% Similarity=0.691 Sum_probs=42.0
Q ss_pred CCceec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 111 DTKVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 111 ~~~~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
+...+| +|+.......||.|+. |..|+|..|++++..+. ....|||+.|+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~--C~~wfH~~Cv~~~~~~~-----~~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDD--CDDWYHWPCVGIMAAPP-----EEMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSS--SSSEEEHHHHTCSSCCC-----SSSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCC--CCcccccccCCCCccCC-----CCCCEEChhccCc
Confidence 446789 8998765568999999 99999999999976541 1368999999763
No 24
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.01 E-value=6.2e-07 Score=85.33 Aligned_cols=56 Identities=30% Similarity=0.678 Sum_probs=43.3
Q ss_pred CCCCceeccCCCCc-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 109 QSDTKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 109 q~~~~~rCiCg~s~-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
.++...+|+|+... ..+.||+|+. |..|+|..|+++...+. ..++.|+|+.|+...
T Consensus 4 ~~~~~~~C~C~~~~~~~~~mi~Cd~--C~~WfH~~Cv~~~~~~~----~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 4 GSDTKLYCICKTPEDESKFYIGCDR--CQNWYHGRCVGILQSEA----ELIDEYVCPQCQSTE 60 (174)
T ss_dssp ---CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHHH----TTCSSCCCHHHHHHH
T ss_pred CCCCCcEeeCCCCCCCCCCEeECCC--CCchhChhhcCCchhhc----cCccCeecCCCcchh
Confidence 34567999999864 4688999998 99999999999875431 236799999999754
No 25
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.98 E-value=9.9e-07 Score=97.07 Aligned_cols=56 Identities=29% Similarity=0.605 Sum_probs=45.6
Q ss_pred CCCCceeccCCCCc-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 109 QSDTKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 109 q~~~~~rCiCg~s~-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
+....++|+|+... ..+.||+|+. |..|+|..||++...+. ..++.|+|+.|+...
T Consensus 33 ~~~~~~yC~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 33 PPPPPVYCVCRQPYDVNRFMIECDI--CKDWFHGSCVGVEEHHA----VDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCCEETTTTEECCTTSCEEEBTT--TCCEEEHHHHTCCGGGG----GGEEEBCCHHHHHHH
T ss_pred CCCCCeEEeCCCcCCCCCCeEEccC--CCCceeeeecCcCcccc----cCCCEEECCCCcCCc
Confidence 45668999999864 3789999998 99999999999986542 235789999998754
No 26
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.1e-05 Score=72.16 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=41.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccc
Q 007373 4 VASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQ 49 (606)
Q Consensus 4 ~~~~k~~L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~~~ 49 (606)
+.+....|..+.|.|||++|.+.||+.+|+|+||++||.++|....
T Consensus 30 ~~~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 30 VEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 3567788999999999999999999999999999999999998754
No 27
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.90 E-value=1e-06 Score=95.87 Aligned_cols=55 Identities=31% Similarity=0.652 Sum_probs=44.1
Q ss_pred CCceeccCCCCc-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccC
Q 007373 111 DTKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRA 171 (606)
Q Consensus 111 ~~~~rCiCg~s~-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r~ 171 (606)
...++|+|+... ..+.||+|+. |..|+|..||+++..+. ..++.|+|+.|+....
T Consensus 3 ~~~~yCiC~~~~d~~~~MIqCD~--C~~WfH~~CVgi~~~~~----~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 3 SVPVYCLCRLPYDVTRFMIECDM--CQDWFHGSCVGVEEEKA----ADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CCCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHHH----TTEEECCCHHHHHHHC
T ss_pred CCCeEEeCCCcCCCCCCeEEcCC--CCcccccccCCcCcccc----cCCCEEECCCCccccC
Confidence 346899999864 3789999998 99999999999986531 1247899999987653
No 28
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.90 E-value=1.5e-06 Score=67.35 Aligned_cols=48 Identities=21% Similarity=0.547 Sum_probs=36.3
Q ss_pred eeccCCCCcC-CCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007373 114 VCCPCGSSLE-TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 114 ~rCiCg~s~~-~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CR 167 (606)
.-|+|+.... ...||+|++ .|..|||..||++...+. .+.+|+|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~-----~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMA-----ENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHH-----HHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCCcccc-----CCCCEECCCCC
Confidence 4577877653 578999994 499999999999975431 24789999986
No 29
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.76 E-value=1.7e-05 Score=62.39 Aligned_cols=38 Identities=37% Similarity=0.574 Sum_probs=35.9
Q ss_pred HhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 007373 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (606)
Q Consensus 11 L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~~ 48 (606)
|..++|.|||..|.+.||+.+|+|+||++|+.++|...
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999998865
No 30
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.67 E-value=3.9e-05 Score=59.15 Aligned_cols=38 Identities=32% Similarity=0.594 Sum_probs=35.7
Q ss_pred HhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 007373 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (606)
Q Consensus 11 L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~~ 48 (606)
+..++|.|||..|.+-||+.+|+|.+|++|+.+++..+
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~e 47 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGP 47 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999998864
No 31
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=97.54 E-value=6.4e-05 Score=58.20 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=35.3
Q ss_pred HhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 007373 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (606)
Q Consensus 11 L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~~ 48 (606)
+..+.|.|||..|.+-||+.+|+|.+|++|+.+....+
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~ 42 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEES 42 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHS
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999987764
No 32
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=97.49 E-value=6.7e-05 Score=62.33 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=36.8
Q ss_pred HHhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccc
Q 007373 10 KLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQ 49 (606)
Q Consensus 10 ~L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~~~ 49 (606)
.|..+.|.|||+.|.+-||+.+|+|.||++|+.+++....
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~~ 64 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQIS 64 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHccC
Confidence 4678999999999999999999999999999999988753
No 33
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.23 E-value=9.5e-05 Score=65.32 Aligned_cols=54 Identities=22% Similarity=0.585 Sum_probs=37.7
Q ss_pred ccCCCCc-CCCCeeeecCCCCCCcccccccccCCCCCCCC-CCCCCccccccccccc
Q 007373 116 CPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGN-PPVPELFYCEICRLSR 170 (606)
Q Consensus 116 CiCg~s~-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~-p~~p~~fyCe~CRl~r 170 (606)
.+|+... ..+.||+|++ .|..|+|..||+++....+.+ +.-...|+|+.|+..+
T Consensus 7 ~iC~~p~~~~~~mi~Cdd-~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 7 GACRSEVNDDQDAILCEA-SCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp TTTCSBCCTTSCEEECTT-TTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCccCCCCCEEEecC-CcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 3677653 4578999992 399999999999985321111 0113689999999854
No 34
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.21 E-value=0.0002 Score=67.13 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=35.8
Q ss_pred HHhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 007373 10 KLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (606)
Q Consensus 10 ~L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~~ 48 (606)
.|.+|.|.|||++|.+-||+.+|+|+||++||.++|+..
T Consensus 60 ~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 60 TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp CTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-
T ss_pred cHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhh
Confidence 467899999999999999999999999999999998754
No 35
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.11 E-value=0.00042 Score=59.36 Aligned_cols=69 Identities=23% Similarity=0.503 Sum_probs=55.3
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHHHHHHH---h-cCCCeeeccC--CCCC-CCCCCeeecHHHHHHHHHhh
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVEL---N-QRSRKWQCPI--CLRN-YSLENIIIDPYFNRITSKMR 429 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~---n-~~~~~W~CPi--C~k~-~~~~~L~ID~y~~~IL~~L~ 429 (606)
...|.|||++..|+-|+....|-|. |+....... + .......||+ |.+. +...+|+.|..+.++++..+
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~--f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE--EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe--ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 3468899999999999998889998 665554443 3 2245789999 8877 99999999999999887654
No 36
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.09 E-value=3.3e-05 Score=74.70 Aligned_cols=54 Identities=22% Similarity=0.613 Sum_probs=37.4
Q ss_pred ec-cCCCCcCC----CCeeeecCCCCCCcccccccccCCCCCCCCCCCC--Cccccccccccc
Q 007373 115 CC-PCGSSLET----ESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVP--ELFYCEICRLSR 170 (606)
Q Consensus 115 rC-iCg~s~~~----~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p--~~fyCe~CRl~r 170 (606)
+| +|+..... ..||+|+. |..|+|..|+++++...+-+..+| ..|+|+.|+...
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~--C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTT--TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCCCCcCccCCcccCCCeEECCC--CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 57 59876443 34999998 999999999999752111110113 389999999853
No 37
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.99 E-value=0.00017 Score=58.43 Aligned_cols=53 Identities=23% Similarity=0.567 Sum_probs=36.7
Q ss_pred ceeccCCCCc-CCCCeeeec-CCCCCCcccccccccCCCCCCCCC-CCCCcccccccc
Q 007373 113 KVCCPCGSSL-ETESMIKCE-DPRCPVWQHMSCVIIPEKPTEGNP-PVPELFYCEICR 167 (606)
Q Consensus 113 ~~rCiCg~s~-~~~~mI~C~-~~~C~~wqH~~Cv~i~~k~~~g~p-~~p~~fyCe~CR 167 (606)
..-++|+... ....||+|+ . |..|+|..||+++....+-+. .....|+|+.|+
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~--C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEAS--CQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTT--TCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccC--ccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3445788763 457899999 6 999999999999853211110 012489999985
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.86 E-value=0.00068 Score=57.12 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=53.3
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L 428 (606)
+.-.+.|||++..|+-|+... |-|. |+.......-.. ...||+|+.++...+|+-+..+.++++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLP-SGTV--MDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TSCE--EEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECC-CCCE--ECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 455689999999999999987 9998 776655444332 36899999999999999999998887643
No 39
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.78 E-value=0.00041 Score=76.51 Aligned_cols=41 Identities=24% Similarity=0.593 Sum_probs=33.8
Q ss_pred CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 123 ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 123 ~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
....||+|+. |..|+|+.||+++....+ ..++|+||.|+..
T Consensus 54 ~~~~mI~CD~--C~~WfH~~CVgi~~~~a~----~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 54 NDFQWIGCDS--CQTWYHFLCSGLEQFEYY----LYEKFFCPKCVPH 94 (528)
T ss_dssp STTSEEECTT--TCCEEEGGGTTCCGGGTT----TEEECCCTTTHHH
T ss_pred cCCCEEECCC--CCcCCCCcCCCCChhHhc----CCCeEECcCCcCC
Confidence 3568999998 999999999999875422 2479999999864
No 40
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=96.76 E-value=0.00062 Score=58.25 Aligned_cols=55 Identities=27% Similarity=0.578 Sum_probs=41.7
Q ss_pred ceeccCCCCc--CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCCcee
Q 007373 113 KVCCPCGSSL--ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWV 176 (606)
Q Consensus 113 ~~rCiCg~s~--~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r~dPF~~ 176 (606)
..-++|+... ..+.||.|+. |..++|..|++++.- | .+.|||+.|+.....+|.+
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~--C~~~fH~~Cl~p~~v-----P--~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYI-----P--EGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSS--SCCCCCHHHHTCSSC-----C--SSCCCCHHHHHHTTSCC--
T ss_pred CcCCcCCCCCCCCCCCEEECCC--CCchhhcccCCCCcc-----C--CCceECccccCccchhhhh
Confidence 3444788653 4578999998 999999999998642 2 2589999999987777764
No 41
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.74 E-value=0.00056 Score=56.29 Aligned_cols=51 Identities=29% Similarity=0.658 Sum_probs=39.2
Q ss_pred eeccCCCCc--CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCC
Q 007373 114 VCCPCGSSL--ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADP 173 (606)
Q Consensus 114 ~rCiCg~s~--~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r~dP 173 (606)
.-.+|+... ..+.||.|+. |..++|..|++++.-| .+.|||+.|+..+.-|
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~--C~~~~H~~Cl~~~~vP-------~g~W~C~~C~~~~~~p 70 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYIP-------EGQWLCRHCLQSRARP 70 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSS--SCCEEEHHHHTCSSCC-------SSCCCCHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCEEECCC--CCCccccccCCCCcCC-------CCCcCCccCcCcCccC
Confidence 334687643 5689999998 9999999999986422 2589999998866544
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.64 E-value=0.0028 Score=54.89 Aligned_cols=66 Identities=8% Similarity=0.017 Sum_probs=53.3
Q ss_pred ceeeecCCCCcccccccccCCCCC-ccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCV-HMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~-HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L 428 (606)
+.-.+.|||++..|+-|+.. .|- |. ||-......-.. ...||+|++++...+|+-+..+.++++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~-~cG~ht--f~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVL-PSSRVT--VDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEEC-TTTCCE--EEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred CcHhcCCcCccccccCCeEC-CCCCeE--ECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 45568999999999999996 566 97 776666555433 35899999999999999999998887654
No 43
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.60 E-value=0.0011 Score=50.62 Aligned_cols=45 Identities=22% Similarity=0.500 Sum_probs=34.6
Q ss_pred cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 117 iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
+|+.....+.||.|+. |..|+|..|+..+- ..+| .+.|+|+.|+.
T Consensus 5 vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~p~l---~~~P--~g~W~C~~C~~ 49 (51)
T 1f62_A 5 VCRKKGEDDKLILCDE--CNKAFHLFCLRPAL---YEVP--DGEWQCPACQP 49 (51)
T ss_dssp TTCCSSCCSCCEECTT--TCCEECHHHHCTTC---CSCC--SSCCSCTTTSC
T ss_pred CCCCCCCCCCEEECCC--CChhhCcccCCCCc---CCCC--CCcEECcCccc
Confidence 5887666778999998 99999999996432 2223 25899999975
No 44
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.55 E-value=0.00078 Score=53.56 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=42.8
Q ss_pred eeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007373 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 360 isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
+++.||||+..|+-|+-...|-|. ||.++....-.+.. .||++++++..++|+
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~--yer~~I~~~l~~~~--~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTI--FEKSLLEQYVKDTG--NDPITNEPLSIEEIV 54 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEE--EEHHHHHHHHHHHS--BCTTTCCBCCGGGCE
T ss_pred CeEEecCCCCCCCCCEEeCCCCcE--EcHHHHHHHHHhCC--CCcCCcCCCChhhcE
Confidence 478999999999999998788887 88887776644433 499999999988876
No 45
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.50 E-value=0.0016 Score=56.08 Aligned_cols=52 Identities=23% Similarity=0.584 Sum_probs=39.1
Q ss_pred CCceec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 111 DTKVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 111 ~~~~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
.....| +|+.....+.||.|+. |..|+|..|+..+- ..+| ...|+|+.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~--C~~~~H~~Cl~Ppl---~~~P--~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDG--CDDNYHIFCLLPPL---PEIP--RGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTT--TCCEECSSSSSSCC---SSCC--SSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCC--CCchhccccCCCCc---ccCC--CCCcCCccCcCc
Confidence 334556 7998766678999998 99999999998432 2233 258999999764
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.31 E-value=0.0038 Score=54.26 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=54.7
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L 428 (606)
+.-.+.|||++..|+-|+... |-|. ||-......-.. ...||+|+.++...+|+-+..+.++++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLP-SGTI--MDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEET-TTEE--EEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred CcHhhCCcCccCcccCCeECC-CCCE--EchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 455689999999999999987 9998 887766555432 46899999999999999999998887654
No 47
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.30 E-value=0.003 Score=50.27 Aligned_cols=52 Identities=25% Similarity=0.591 Sum_probs=38.9
Q ss_pred CCCCCceec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 108 IQSDTKVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 108 ~q~~~~~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
+..+...+| +|+. .+.||.|+. |..|+|..|+..+-. .+| ...|+|+.|+..
T Consensus 6 ~~~~~~~~C~vC~~---~g~ll~CD~--C~~~fH~~Cl~p~l~---~~p--~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQ---GGEIILCDT--CPRAYHMVCLDPDME---KAP--EGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSC---CSSEEECSS--SSCEEEHHHHCTTCC---SCC--CSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCC---CCcEEECCC--CChhhhhhccCCCCC---CCC--CCceECcccccc
Confidence 344456778 4986 479999998 999999999997532 222 358999999864
No 48
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.20 E-value=0.0032 Score=50.79 Aligned_cols=48 Identities=25% Similarity=0.626 Sum_probs=36.0
Q ss_pred ceec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 113 ~~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
...| +|+. .+.||.|+. |..++|..|++.+- ..+| ...|+|+.|...+
T Consensus 8 ~~~C~vC~~---~g~ll~CD~--C~~~fH~~Cl~ppl---~~~P--~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 8 EDECAVCRD---GGELICCDG--CPRAFHLACLSPPL---REIP--SGTWRCSSCLQAT 56 (66)
T ss_dssp CCSBSSSSC---CSSCEECSS--CCCEECTTTSSSCC---SSCC--SSCCCCHHHHHTC
T ss_pred CCCCccCCC---CCCEEEcCC--CChhhcccccCCCc---CcCC--CCCeECccccCcc
Confidence 4567 5886 368999998 99999999998432 2233 2689999998644
No 49
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.12 E-value=0.0052 Score=51.55 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=53.0
Q ss_pred eecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCC-CCCCeeecHHHHHHHHHhhc
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNY-SLENIIIDPYFNRITSKMRN 430 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~-~~~~L~ID~y~~~IL~~L~~ 430 (606)
.|.|||....|..|+....|.|.-|..- ..|+. ......||+|.+.+ ...+|..+..+.++++.++.
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHH---HCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH---hcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 5789999999999998755999977643 34443 23457999999996 78899999999999886643
No 50
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.09 E-value=0.004 Score=50.68 Aligned_cols=64 Identities=11% Similarity=0.162 Sum_probs=50.5
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L 428 (606)
.|.|||.+..|+.|+.. .|.|. |...-....-. .....||+|++.+...+|..+..+..+++..
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~--fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQT--YERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEE--EEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cCCCCCccccccCCEEc-CCCCe--ecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 57899999999999986 79998 44444443332 2467899999999999999998888887654
No 51
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=96.01 E-value=0.0053 Score=54.40 Aligned_cols=47 Identities=21% Similarity=0.602 Sum_probs=36.1
Q ss_pred CCceecc-CCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007373 111 DTKVCCP-CGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 111 ~~~~rCi-Cg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CR 167 (606)
+...+|. |+ .++.||.|+...|..|+|..|+++...| .+.|||+.|+
T Consensus 13 ~~~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P-------~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCG---DGGELVMCDKKDCPKAYHLLCLNLTQPP-------YGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTC---CCSEEEECCSTTCCCEECTGGGTCSSCC-------SSCCCCGGGB
T ss_pred CCCCCCCcCC---CCCcEeEECCCCCCcccccccCcCCcCC-------CCCEECCCCC
Confidence 3456786 55 4689999995559999999999976543 3589999875
No 52
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=95.89 E-value=0.0065 Score=58.46 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=53.6
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L 428 (606)
.-.+.|||++..|+-|+.. .|-|. ||-......-..... .||+|+.++...+|+-+..+..++...
T Consensus 104 p~~f~CPI~~elm~DPV~~-~~Ght--fer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT-PSGIT--YDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTSCE--EEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCeEC-CCCCE--ECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 4568999999999999998 79997 777666555333333 699999999999999999998887654
No 53
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.79 E-value=0.0076 Score=48.82 Aligned_cols=47 Identities=21% Similarity=0.576 Sum_probs=35.0
Q ss_pred ceec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
..+| +|+. .+.||.|+. |..++|..|+..+-. .+| ...|||+.|+..
T Consensus 12 ~~~C~vC~~---~~~ll~Cd~--C~~~~H~~Cl~P~l~---~~P--~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGD---GTDVLRCTH--CAAAFHWRCHFPAGT---SRP--GTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSC---CTTCEECSS--SCCEECHHHHCTTTC---CCC--SSSCCCTTTTTC
T ss_pred CCCcCCCCC---CCeEEECCC--CCCceecccCCCccC---cCC--CCCEECccccCC
Confidence 3456 6875 468999999 999999999975422 222 357999999864
No 54
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=95.50 E-value=0.0083 Score=49.04 Aligned_cols=46 Identities=26% Similarity=0.739 Sum_probs=35.2
Q ss_pred cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 117 iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
+|+.+...+.||.|+. |..++|..|++.+ +..+|. ...|+|+.|+.
T Consensus 23 ~C~~~~~~~~ll~CD~--C~~~yH~~Cl~Pp---l~~~P~-g~~W~C~~C~~ 68 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPP---LSSVPS-EDEWYCPECRN 68 (70)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEEGGGSSSC---CSSCCS-SSCCCCTTTSC
T ss_pred CCCCcCCCCCEEEcCC--CCCceecccCCCC---cCCCCC-CCCcCCcCccC
Confidence 5777767789999998 9999999999843 223331 22899999985
No 55
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.46 E-value=0.0098 Score=55.48 Aligned_cols=70 Identities=29% Similarity=0.487 Sum_probs=55.1
Q ss_pred eeceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCC-CCCCeeecHHHHHHHHHhh
Q 007373 356 DSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNY-SLENIIIDPYFNRITSKMR 429 (606)
Q Consensus 356 ~s~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~-~~~~L~ID~y~~~IL~~L~ 429 (606)
..+.-.+.|||-...+..|+....|.|.-|.+- ..|+. .....||+|.+.+ ....|..|..+.+++..+.
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----SGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----TTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----hCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 344557899999999999999889999977653 34443 2357899999988 4678999999999988764
No 56
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.41 E-value=0.02 Score=48.73 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=54.3
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhhc
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMRN 430 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L~~ 430 (606)
+.-.+.|||-...+..|+....|.|.-|.+- ..|+. ..-.||+|.+.+...+|..+..+.++++.++.
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-----YKTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-----CCCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 3446889999999999998889999976642 33433 23589999999999999999999999886653
No 57
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=95.38 E-value=0.011 Score=47.28 Aligned_cols=53 Identities=19% Similarity=0.398 Sum_probs=36.6
Q ss_pred eec-cCCCC--cCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 114 VCC-PCGSS--LETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 114 ~rC-iCg~s--~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
..| +|+.. ...+.||.|+. |..++|..|++.+-.. ..++ -...|+|+.|+...
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~~p~l~~-~~~~-p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDK--CGQGYHQLCHTPHIDS-SVID-SDEKWLCRQCVFAT 62 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSS--SCCEEETTTSSSCCCH-HHHH-SSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCEEECCC--CChHHHhhhCCCcccc-cccC-CCCCEECCCCcCcc
Confidence 345 68865 33589999999 9999999999874321 0000 13589999998643
No 58
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=95.20 E-value=0.009 Score=47.12 Aligned_cols=45 Identities=22% Similarity=0.662 Sum_probs=33.8
Q ss_pred eec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 114 ~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
..| +|+. .+.||.|+. |..|+|..|++.+- ..+| .+.|+|+.|+.
T Consensus 6 ~~C~vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl---~~~p--~g~W~C~~C~~ 51 (60)
T 2puy_A 6 DFCSVCRK---SGQLLMCDT--CSRVYHLDCLDPPL---KTIP--KGMWICPRCQD 51 (60)
T ss_dssp SSCTTTCC---CSSCEECSS--SSCEECGGGSSSCC---SSCC--CSCCCCHHHHH
T ss_pred CCCcCCCC---CCcEEEcCC--CCcCEECCcCCCCc---CCCC--CCceEChhccC
Confidence 355 5886 368999998 99999999998432 2233 25899999965
No 59
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.07 E-value=0.0011 Score=59.10 Aligned_cols=41 Identities=24% Similarity=0.575 Sum_probs=28.5
Q ss_pred CeeeecCCCCCCcccccccccCCCCCCCCCCC--CCccccccccc
Q 007373 126 SMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPV--PELFYCEICRL 168 (606)
Q Consensus 126 ~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~--p~~fyCe~CRl 168 (606)
+||+|+. |..|+|..|++++....+-++.+ ...|.|+.|..
T Consensus 1 ~mi~c~~--c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCCSC--CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred Ccccccc--CCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 5999999 99999999999874210000111 23689999965
No 60
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=95.03 E-value=0.014 Score=55.96 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=35.3
Q ss_pred CceeccCCCCc-CCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 112 TKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 112 ~~~rCiCg~s~-~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
...+|.||..- -+..|++|.. |..|+|..|+.....++.++ ..--.|.|..|..
T Consensus 4 ~~~yCYCG~~~~~~~~mLqC~~--C~qWFH~~Cl~~~~~~~lp~-~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 4 QAGSVDEENGRQLGEVELQCGI--CTKWFTADTFGIDTSSCLPF-MTNYSFHCNVCHH 58 (177)
T ss_dssp -------CTTCCTTSCEEECTT--TCCEEEGGGGTCCCTTCCTT-CCSEEEECTTTST
T ss_pred eeeEEEcCCCCCCCceeEeecc--ccceecHHHhcccccCcccc-ceeEEEEccccCC
Confidence 35799999853 3678999999 99999999998776554321 2344678999976
No 61
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.01 E-value=0.015 Score=49.91 Aligned_cols=69 Identities=19% Similarity=0.460 Sum_probs=55.8
Q ss_pred ceeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhhc
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMRN 430 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L~~ 430 (606)
+.-.+.|||-...+..|+.-..|.|.-|.+ +..|+... ...||+|.+.+...+|+...++.+|.+.++.
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ----RAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC----cCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 445688999999999999878999997775 34555533 2689999999999999999999888776654
No 62
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.93 E-value=0.017 Score=48.13 Aligned_cols=46 Identities=30% Similarity=0.777 Sum_probs=35.0
Q ss_pred cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 117 iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
+|+.....+.||.|+. |..++|..|+..+ +..+|. ...|+|+.|+.
T Consensus 31 vC~~~~~~~~ll~CD~--C~~~yH~~Cl~Pp---l~~~P~-g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHEPNMQLLCDE--CNVAYHIYCLNPP---LDKVPE-EEYWYCPSCKT 76 (77)
T ss_dssp SSCCCCCSTTEEECSS--SCCEEETTSSSSC---CSSCCC-SSCCCCTTTCC
T ss_pred CcCCcCCCCCEEEcCC--CCccccccccCCC---ccCCCC-CCCcCCcCccC
Confidence 5887767889999998 9999999999843 233331 12799999964
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.85 E-value=0.017 Score=57.35 Aligned_cols=64 Identities=8% Similarity=-0.074 Sum_probs=49.4
Q ss_pred eeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007373 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 360 isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L 428 (606)
-.+.|||+...|+-|+... |-|.-|-.. ..|+..+ .. .||+|+.++...+|+.+.-+.++++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~--~~--~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRV--GH--FNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp STTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHT--CS--SCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred cccCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHC--CC--CCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 3578999999999999865 999855432 3344322 22 299999999999999999999887654
No 64
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=94.82 E-value=0.02 Score=45.46 Aligned_cols=47 Identities=23% Similarity=0.619 Sum_probs=35.1
Q ss_pred ceec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
..+| +|+. .+.||.|+. |..++|..|+..+- ..+| ...|+|+.|+..
T Consensus 9 ~~~C~vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl---~~~p--~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKD---GGELLCCDT--CPSSYHIHCLNPPL---PEIP--NGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCC---CSSCBCCSS--SCCCBCSSSSSSCC---SSCC--SSCCCCTTTTTT
T ss_pred CCcCCCCCC---CCCEEEcCC--CCHHHcccccCCCc---CcCC--CCccCChhhcCc
Confidence 3456 5875 468999999 99999999998532 2233 358999999763
No 65
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.75 E-value=0.02 Score=44.47 Aligned_cols=46 Identities=26% Similarity=0.676 Sum_probs=34.2
Q ss_pred ceec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 113 ~~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
...| +|+.. +.||.|+. |..++|..|+..+-+ .+| ...|+|+.|+-
T Consensus 9 ~~~C~vC~~~---g~ll~Cd~--C~~~~H~~Cl~ppl~---~~p--~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---GQLLMCDT--CSRVYHLDCLDPPLK---TIP--KGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---SCCEECSS--SSCEECSSSSSSCCC---SCC--CSSCCCHHHHC
T ss_pred CCCCccCCCC---CeEEEcCC--CCcceECccCCCCcC---CCC--CCceEChhhhC
Confidence 3457 58863 68999998 999999999985322 223 25899999963
No 66
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.56 E-value=0.033 Score=49.43 Aligned_cols=66 Identities=14% Similarity=0.310 Sum_probs=52.8
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCC-CCeeecHHHHHHHHHh
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSL-ENIIIDPYFNRITSKM 428 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~-~~L~ID~y~~~IL~~L 428 (606)
+.-.+.|||-...+..|+.. .|.|.-|.+- ..|+. .....||+|.+.+.. .+|..+..+..+++.+
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFR----AQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred CccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHh----HCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 34468899999999999886 8999977753 34444 345699999999987 8899999999988754
No 67
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.49 E-value=0.049 Score=47.11 Aligned_cols=67 Identities=25% Similarity=0.400 Sum_probs=52.5
Q ss_pred eceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCC----CeeecHHHHHHHHHh
Q 007373 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLE----NIIIDPYFNRITSKM 428 (606)
Q Consensus 357 s~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~----~L~ID~y~~~IL~~L 428 (606)
.+.-.+.|||-...+..|+....|.|.-|..- ..|+. . .-.||+|.+.+... +|..+..+.++++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE---T--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT---S--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH---h--CCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 34456889999999999999889999977542 23332 2 27899999998876 899999999988765
No 68
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.48 E-value=0.022 Score=50.17 Aligned_cols=64 Identities=16% Similarity=0.330 Sum_probs=51.4
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHH-HHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhh
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMR 429 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L~ 429 (606)
.-.|.|||-+..+..|+....|.|.-|..-- .|+. ..||+|.+.+...+|..+..+..++..++
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 3458899999999999988799998775422 2221 57999999999999999999998887554
No 69
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=94.27 E-value=0.04 Score=51.03 Aligned_cols=66 Identities=15% Similarity=0.329 Sum_probs=52.9
Q ss_pred eeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCC-CeeecHHHHHHHHHhh
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLE-NIIIDPYFNRITSKMR 429 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~-~L~ID~y~~~IL~~L~ 429 (606)
.-.|.|||-...+..|+. ..|.|.-|.. +..++. .....||+|...+... .|..+..+.++++.+.
T Consensus 76 ~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFK----AQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred ccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHH----hCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 345889999999999998 6999997764 334443 2456899999999988 8999999999987653
No 70
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=93.94 E-value=0.032 Score=46.51 Aligned_cols=46 Identities=26% Similarity=0.739 Sum_probs=33.5
Q ss_pred cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 117 iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
+|+.....+.||.|+. |..++|..|+..+ +..+|. ...|+|+.|+-
T Consensus 31 vC~~~~d~~~ll~CD~--C~~~yH~~Cl~Pp---L~~~P~-g~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPP---LSSVPS-EDEWYCPECRN 76 (77)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEETTTSSSC---CSSCCS-SSCCCCTTTC-
T ss_pred ccCCCCCCcceeEeCC--CCCccCcccCCCc---ccCCCC-CCceECcCccc
Confidence 4666666688999998 9999999998843 233332 23399999974
No 71
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.94 E-value=0.044 Score=48.31 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=53.4
Q ss_pred eceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhh
Q 007373 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMR 429 (606)
Q Consensus 357 s~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L~ 429 (606)
.+.-.+.|||-...+..|+.. .|.|.-|.+- ..|+.... ..||+|.+.+...++.-+.++.+++..++
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC----CCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 445568999999999999885 7999977654 34444322 38999999999999999999998876553
No 72
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.80 E-value=0.044 Score=43.03 Aligned_cols=52 Identities=13% Similarity=0.314 Sum_probs=39.8
Q ss_pred eeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCe
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENI 415 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L 415 (606)
.-.+.||+-...++.|+. ..|.|.-|.+ +..|+. .....||+|.+.+..++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT----TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH----hCcCCCCCCCcCCChhhc
Confidence 346789999999999999 6999996654 233332 345689999999988775
No 73
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.56 E-value=0.04 Score=47.50 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=42.5
Q ss_pred eecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHH
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPY 420 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y 420 (606)
.+.||+-+..+..|+. ..|.|.-|.+- ..|+.. ......||+|.+.+...+|..+..
T Consensus 21 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQ--KKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHS--SSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHh--CCCCCCCcCCCCcCCHhhcCccHH
Confidence 5689999999999988 58999977653 344432 234579999999998887765533
No 74
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.22 E-value=0.016 Score=47.23 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=45.7
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHH-HHHHHhc-CCCeeeccCCCCCCCCCCeeecHHH
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQ-RSRKWQCPICLRNYSLENIIIDPYF 421 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n~-~~~~W~CPiC~k~~~~~~L~ID~y~ 421 (606)
.-.+.||+-+..+..|+. ..|.|.-|.+-. .|+.... ......||+|.+.+..++|..+..+
T Consensus 17 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHV 80 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCC
T ss_pred ccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHH
Confidence 345789999999999986 569999776533 3443321 2357899999999999888877544
No 75
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=93.15 E-value=0.043 Score=48.70 Aligned_cols=46 Identities=28% Similarity=0.671 Sum_probs=35.7
Q ss_pred cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 117 iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
+|+.....+.||.|+. |..++|..|+..+ +..+| .+.|+|+.|+..
T Consensus 63 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~pp---l~~~P--~g~W~C~~C~~~ 108 (114)
T 2kwj_A 63 LCGTSENDDQLLFCDD--CDRGYHMYCLNPP---VAEPP--EGSWSCHLCWEL 108 (114)
T ss_dssp TTTCCTTTTTEEECSS--SCCEEETTTSSSC---CSSCC--SSCCCCHHHHHH
T ss_pred cccccCCCCceEEcCC--CCccccccccCCC---ccCCC--CCCeECccccch
Confidence 5787766789999998 9999999999843 33333 258999999753
No 76
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.92 E-value=0.11 Score=44.42 Aligned_cols=47 Identities=21% Similarity=0.685 Sum_probs=34.6
Q ss_pred ceec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 113 ~~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
...| +|+.. +.+|.|+. |...+|..|+..+ +..+| .+.|+|+.|+..
T Consensus 25 ~~~C~vC~~~---g~LL~CD~--C~~~fH~~Cl~Pp---L~~~P--~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP---GDLVMCNQ--CEFCFHLDCHLPA---LQDVP--GEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS---SCCEECTT--SSCEECTTSSSTT---CCCCC--SSSCCCCSCCCC
T ss_pred CCcCcCcCCC---CCEEECCC--CCCceecccCCCC---CCCCc--CCCcCCccccCC
Confidence 4466 57753 68999998 9999999998532 22333 358999999864
No 77
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=92.78 E-value=0.059 Score=53.59 Aligned_cols=46 Identities=26% Similarity=0.739 Sum_probs=31.1
Q ss_pred cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 117 iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
+|+..-..+.|+.|+. |..++|..|+..+ +..+|. ...|+|+.|+.
T Consensus 179 vC~~~~~~~~lL~CD~--C~~~yH~~CL~PP---L~~vP~-G~~W~Cp~C~~ 224 (226)
T 3ask_A 179 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPP---LSSVPS-EDEWYCPECRN 224 (226)
T ss_dssp SSCCCCC--CCEECSS--SCCEECSCC--CC---CCSCCS-SSCCCCGGGC-
T ss_pred CCCCCCCCCCeEEcCC--CCcceeCccCCCC---cccCCC-CCCCCCcCCcC
Confidence 5777666789999999 9999999999843 333331 12799999975
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.43 E-value=0.082 Score=46.36 Aligned_cols=51 Identities=25% Similarity=0.574 Sum_probs=38.0
Q ss_pred ec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCC
Q 007373 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRAD 172 (606)
Q Consensus 115 rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r~d 172 (606)
.| +|+.......|+.|+. |..++|..|+..+ +..+|. +.|+|+.|+..+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~pp---l~~~P~--g~W~C~~C~~c~~g 107 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDT--CDKGYHTFCLQPV---MKSVPT--NGWKCKNCRICISG 107 (111)
T ss_dssp CCTTTCCCSCCTTEEECSS--SCCEEEGGGSSSC---CSSCCS--SCCCCHHHHCCSCS
T ss_pred cccccCccCCCCCeeECCC--CCcHHhHHhcCCc---cccCCC--CCcCCcCCcCcCCC
Confidence 45 4887665667999998 9999999998743 333332 58999999876543
No 79
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.40 E-value=0.084 Score=42.19 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=42.2
Q ss_pred eeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
.-.+.|||-+..+..|+.-..|.|.-|.+ +..|+.. .-.||+|.+.+...++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCcccCccccc
Confidence 34688999999999999988999998775 4555543 36899999998877654
No 80
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.02 E-value=0.13 Score=40.80 Aligned_cols=56 Identities=16% Similarity=0.449 Sum_probs=41.6
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccHHHHHHHhc-CCCeeeccCCCCCCCCCCee
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQ-RSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~-~~~~W~CPiC~k~~~~~~L~ 416 (606)
+.-.+.|||-+..+..|+.. .|.|.-|.+ -+..... ....-.||+|.+.+..++++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~--Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLK--CITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC-TTCCEEEHH--HHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEc-CCCChhhHH--HHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 44568899999999999887 999996654 3333322 24567999999999887763
No 81
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.99 E-value=0.36 Score=39.27 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=41.9
Q ss_pred eeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHH
Q 007373 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNR 423 (606)
Q Consensus 360 isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~ 423 (606)
..+.|||-+..+..|+. ..|.|.-|.+- ..|+.. ...||+|.+.+. ..+.....+.+
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA-----TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp CCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH-----CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred CCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC-----CCcCCCcCcccc-ccCCcHHHHHH
Confidence 35789999999999987 68999977653 344432 458999999986 66776654433
No 82
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=91.85 E-value=0.16 Score=46.38 Aligned_cols=46 Identities=33% Similarity=0.449 Sum_probs=41.3
Q ss_pred HHHHHHHhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccch
Q 007373 5 ASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQV 50 (606)
Q Consensus 5 ~~~k~~L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~~~~ 50 (606)
...+++|..+...+|++++.-|+++++|.|-||++||++.|..-.+
T Consensus 66 ~k~~e~l~K~~~~~L~~~c~iL~l~~~g~keelv~ril~FL~~P~~ 111 (131)
T 2jx3_A 66 KKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPKP 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSCSCHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHccCHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhCccc
Confidence 4578899999999999999999999999999999999999987443
No 83
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=91.54 E-value=0.14 Score=47.74 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=53.4
Q ss_pred eeceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHh
Q 007373 356 DSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKM 428 (606)
Q Consensus 356 ~s~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~L 428 (606)
+.+.-.|.|||-...+..|+. ..|.|.-|.+- ..++.... ..||+|.+.+...+|.-|.++.+++..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCC----CCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 445567899999999999988 58999977653 33443321 2999999999999999999998887654
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=90.77 E-value=0.15 Score=48.54 Aligned_cols=46 Identities=28% Similarity=0.682 Sum_probs=34.2
Q ss_pred ec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 115 rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
.| +|+. .|.++.|+. |..++|..|+..+- ..+| .+.|+|+.|+...
T Consensus 6 ~C~~C~~---~g~ll~Cd~--C~~~~H~~C~~p~l---~~~p--~~~W~C~~C~~~~ 52 (184)
T 3o36_A 6 WCAVCQN---GGELLCCEK--CPKVFHLSCHVPTL---TNFP--SGEWICTFCRDLS 52 (184)
T ss_dssp SCTTTCC---CSSCEECSS--SSCEECTTTSSSCC---SSCC--SSCCCCTTTSCSS
T ss_pred ccccCCC---CCeeeecCC--CCcccCccccCCCC---CCCC--CCCEECccccCcc
Confidence 35 6885 377999999 99999999986432 2223 3579999999743
No 85
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.57 E-value=0.32 Score=39.28 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=45.5
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccHH-HHHHHh-cCCCeeeccCCCCCCCCCCeeecHH
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELN-QRSRKWQCPICLRNYSLENIIIDPY 420 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n-~~~~~W~CPiC~k~~~~~~L~ID~y 420 (606)
+.-.+.||+-+..+..|+.. .|.|.-|.+-- .|+... .......||+|.+.+...+|..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCC
T ss_pred ccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHH
Confidence 34468899999999999875 89998776643 344431 2345789999999999888775544
No 86
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=90.55 E-value=0.11 Score=41.79 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=38.5
Q ss_pred eeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCC
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 412 (606)
.-.+.|||-...+..|+....|.|.-|.. +..|+... ....||+|.+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---DEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS---SSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc---CCCcCCCCCCcCCC
Confidence 44688999999999999966699998776 34555432 35689999987543
No 87
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=90.54 E-value=0.19 Score=43.81 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=49.0
Q ss_pred ceeeecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCee-ecHHHHHHHHHh
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENII-IDPYFNRITSKM 428 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~-ID~y~~~IL~~L 428 (606)
+.-.+.|||-...+..|+. ..|.|.-|..- ..|+... .-.||+|.+.+...+|. .+..+.+++..+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVM----GSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred ccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC----cCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 3446889999999999998 58999977653 3444431 34799999999988875 567777766544
No 88
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=90.41 E-value=0.14 Score=44.65 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=48.0
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCC-------CCeeecHHHHHHHHHh
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSL-------ENIIIDPYFNRITSKM 428 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~-------~~L~ID~y~~~IL~~L 428 (606)
.+.|||-...+..|+.. .|.|.-|.+-- ... .......||+|.+.+.. .++.+|..+.++++..
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci--~~~-~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKPCF--QST-VEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHHHH--CCC-CCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHHHH--HHH-HhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 57899999999999987 89998665432 111 12235789999998864 7888999988887643
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=89.68 E-value=0.24 Score=43.69 Aligned_cols=45 Identities=29% Similarity=0.718 Sum_probs=32.8
Q ss_pred cCCCC-cCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 117 PCGSS-LETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 117 iCg~s-~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
+|+.. ...+.|+.|+. |..++|..|+..+ +..+| .+.|+|+.|+.
T Consensus 66 vC~~~~~~~~~ll~Cd~--C~~~yH~~Cl~p~---l~~~P--~~~W~C~~C~~ 111 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDS--CDRGFHMECCDPP---LTRMP--KGMWICQICRP 111 (112)
T ss_dssp TTCCCCCTTCCCEECTT--TCCEECGGGCSSC---CSSCC--SSCCCCTTTSC
T ss_pred cccCcCCCccceEEcCC--CCCeeecccCCCC---CCCCC--CCCeECCCCCC
Confidence 46653 33468999999 9999999998643 22333 24799999985
No 90
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=89.21 E-value=0.022 Score=46.00 Aligned_cols=57 Identities=23% Similarity=0.430 Sum_probs=40.5
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcC-----CCeeeccCCCCCCCCCCeeecHH
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQR-----SRKWQCPICLRNYSLENIIIDPY 420 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~-----~~~W~CPiC~k~~~~~~L~ID~y 420 (606)
.+.||+-+..+..|+. ..|.|.-|.+- +...... .....||+|.+.+...+|..+..
T Consensus 12 ~~~C~IC~~~~~~p~~-l~CgH~fC~~C--i~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 12 EVTCPICLELLTEPLS-LDCGHSLCRAC--ITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCEETTTTEECSSCCC-CSSSCCCCHHH--HSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred CCCCcCCCcccCCeeE-CCCCCHHHHHH--HHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 4779999999999987 48999866442 2222111 23679999999998877665543
No 91
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.82 E-value=0.23 Score=42.17 Aligned_cols=53 Identities=21% Similarity=0.595 Sum_probs=36.4
Q ss_pred eec-cCCCCcC--CCCeeeecCCCCCCcccccccccCCCCCC-CCCCCCCccccccccccc
Q 007373 114 VCC-PCGSSLE--TESMIKCEDPRCPVWQHMSCVIIPEKPTE-GNPPVPELFYCEICRLSR 170 (606)
Q Consensus 114 ~rC-iCg~s~~--~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~-g~p~~p~~fyCe~CRl~r 170 (606)
..| +|+.... .+.||.|+. |...+|..|+..+-.... .+| ...|+|+.|+...
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~~~~~~p--~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQE--CHNLYHQDCHKPQVTDKEVNDP--RLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSS--SCCEEETTTSSSCCCHHHHHCT--TCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCC--CCCeEcCccCCCcccccccCCC--CCCeeCccccchh
Confidence 445 6886533 478999999 999999999985432000 011 3589999998754
No 92
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=88.26 E-value=0.2 Score=44.16 Aligned_cols=42 Identities=19% Similarity=0.473 Sum_probs=30.9
Q ss_pred CCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 125 ESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 125 ~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
..|++|+. |..|+|..|++++...+- ...++..|.|+.|+..
T Consensus 73 ~~m~~C~~--C~~~~H~~C~~~~~~~~~-~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECCI--CNEIVHPGCLQMDGEGLL-NEELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEETT--TCCEECGGGCCSCCCCEE-CSSSSSEEECTTTC--
T ss_pred cceEEeee--cCCeEECCCCCCCccccc-cccCCCCeECCCCcCC
Confidence 45999999 999999999998643210 0245778999999874
No 93
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=88.06 E-value=0.27 Score=47.77 Aligned_cols=47 Identities=26% Similarity=0.613 Sum_probs=34.7
Q ss_pred eec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccccc
Q 007373 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (606)
Q Consensus 114 ~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r 170 (606)
..| +|+. .|.+|-|+. |..++|..|+..+- ..+| .+.|+|+.|+...
T Consensus 8 ~~C~~C~~---~g~ll~Cd~--C~~~~H~~Cl~p~l---~~~p--~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQN---GGDLLCCEK--CPKVFHLTCHVPTL---LSFP--SGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCC---CEEEEECSS--SSCEECTTTSSSCC---SSCC--SSCCCCTTTSCSS
T ss_pred CCCCCCCC---CCceEEcCC--CCCccCCccCCCCC---CCCC--CCCEEeCceeCcc
Confidence 345 6885 367999999 99999999986432 2223 3579999999754
No 94
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=87.76 E-value=0.26 Score=44.50 Aligned_cols=59 Identities=24% Similarity=0.500 Sum_probs=41.1
Q ss_pred eecCCCCcccccccccCCCCCccccccHH-HHHHHhcCCCeeeccCCCCCCCC--CCeeecHHHHHHH
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQRSRKWQCPICLRNYSL--ENIIIDPYFNRIT 425 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n~~~~~W~CPiC~k~~~~--~~L~ID~y~~~IL 425 (606)
.|.|||-...+..|+- ..|.|.-|.+-- .|+. ..-.||+|.+++.. .++.+|..+..++
T Consensus 53 ~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMK-----RKIECPICRKDIKSKTYSLVLDNCINKMV 114 (138)
T ss_dssp HSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTT-----TCSBCTTTCCBCCCEEECHHHHHHHHHHH
T ss_pred cCCCcccCcccCCceE-CCCCCCccHHHHHHHHH-----cCCcCCCCCCcCCCCCCccchhHHHHHHH
Confidence 3679999999999986 579998776642 2322 23569999988753 3556666665554
No 95
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=87.46 E-value=0.13 Score=47.07 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=52.0
Q ss_pred ceEeeeceeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCC---------CCeeecHHH
Q 007373 352 EVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSL---------ENIIIDPYF 421 (606)
Q Consensus 352 eIv~~s~~isL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~---------~~L~ID~y~ 421 (606)
++....+.-.|.|||-...+.-|+. ..|.|.-|.. +..|+ +.....||+|.+++.+ .++.-|.++
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~----~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASIL----SSGPQNCAACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHG----GGSCEECHHHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHH----hcCCCCCCCCCCcccccccccccchhhhcccHHH
Confidence 3444556667899999999999988 5999997765 23333 2344789999886543 367789999
Q ss_pred HHHHHHh
Q 007373 422 NRITSKM 428 (606)
Q Consensus 422 ~~IL~~L 428 (606)
.+.+..|
T Consensus 97 ~~~i~~L 103 (141)
T 3knv_A 97 RREVESL 103 (141)
T ss_dssp HHHHHTS
T ss_pred HHHHccc
Confidence 8887654
No 96
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.72 E-value=0.59 Score=36.28 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=37.9
Q ss_pred ecCCCCcc-ccccccc---CCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCeee
Q 007373 362 LRCPMSGS-RIKVAGR---FKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIII 417 (606)
Q Consensus 362 L~CPls~~-ri~~P~R---g~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~I 417 (606)
+.||+-+. .+.-|.+ ...|.|.-|..- ..++. .....||+|.+.+...+++-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----RGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----TTSSSCTTTCCCCSSCCCEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----cCCCcCCCCCCcccccccee
Confidence 56999999 8888874 568999976543 23322 23568999999998887753
No 97
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=85.63 E-value=0.38 Score=38.70 Aligned_cols=51 Identities=24% Similarity=0.507 Sum_probs=36.6
Q ss_pred eecCCCCcccccccc--cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007373 361 NLRCPMSGSRIKVAG--RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 361 sL~CPls~~ri~~P~--Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
.+.|||-+..+..|. +...|.|.-|++ +..|+.. ...||+|.+.+...++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-----HDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-----TCSCTTTCCCCCCSCSC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-----CCcCcCcCCccCCcccC
Confidence 567999988887654 335799987766 4455532 25899999998776654
No 98
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=85.23 E-value=0.55 Score=36.61 Aligned_cols=45 Identities=24% Similarity=0.515 Sum_probs=34.5
Q ss_pred ecCCCCcccccccccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCC
Q 007373 362 LRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
..||+-...+..|+....|.|.-|++- ..|+..+ ..||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----PTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----CSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-----CcCcCCChhhH
Confidence 469999999988888889999977763 3455422 58999998764
No 99
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=84.40 E-value=0.44 Score=36.42 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=36.6
Q ss_pred ecCCCCcccccccc------cCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007373 362 LRCPMSGSRIKVAG------RFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 362 L~CPls~~ri~~P~------Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
+.||+-+..+..|. ....|.|.-|.+- ..|+.. ...||+|.+.+...++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-----CCCCCCCCccCCcccee
Confidence 56999999988874 5578999866553 345443 34899999998877654
No 100
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=84.23 E-value=0.5 Score=37.01 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=37.1
Q ss_pred ecCCCCcccccccc------cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007373 362 LRCPMSGSRIKVAG------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 362 L~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
+.||+-+..+..|. ....|.|.-|.+ +..|+... -.||+|.+.+...++.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCCBCCCCSCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----CCCCCCCCccChhhee
Confidence 56999999998884 567899987665 33455422 3899999998877653
No 101
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=83.71 E-value=1.2 Score=38.86 Aligned_cols=47 Identities=23% Similarity=0.481 Sum_probs=35.3
Q ss_pred eec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007373 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 114 ~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CR 167 (606)
..| +|+.......||.|+. |...+|..|+.+...++ ....|+|+.|+
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~--C~~~~H~~Cl~~~~~~~-----~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTT--CGQHYHGMCLDIAVTPL-----KRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSS--SCCEECTTTTTCCCCTT-----TSTTCCCTTTC
T ss_pred CCCcCCCCCCCCcCCeECCC--CCCCcChHHhCCccccc-----cccCccCCcCC
Confidence 345 6887655567899998 99999999998865431 13578998886
No 102
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=83.69 E-value=0.62 Score=44.76 Aligned_cols=45 Identities=22% Similarity=0.705 Sum_probs=33.1
Q ss_pred ec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccc
Q 007373 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (606)
Q Consensus 115 rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~ 169 (606)
+| +|+. .+.++.|+. |...+|..|+..+- ..+| .+.|+|+.|+..
T Consensus 4 ~C~~C~~---~g~ll~Cd~--C~~~~H~~Cl~p~l---~~~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 4 ICRVCQK---PGDLVMCNQ--CEFCFHLDCHLPAL---QDVP--GEEWSCSLCHVL 49 (189)
T ss_dssp CBTTTCC---CSSCCCCTT--TCCBCCSTTSTTCC---SSCC--CTTCCTTTTSCS
T ss_pred cCccCCC---CCceeECCC--CCchhccccCCCCc---ccCC--CCCCCCcCccCC
Confidence 45 5774 467999999 99999999986432 2222 358999999874
No 103
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.41 E-value=0.35 Score=38.37 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=34.6
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCC
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (606)
.+.|||-+..++.|+.. .|.|.-|.+- +..... ....||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~fC~~C--i~~~~~--~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHVFCYLC--VKGASW--LGKRCALCRQEIPEDF 63 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEEEEHHH--HHHCTT--CSSBCSSSCCBCCHHH
T ss_pred CCCCccCCcccCCCEEc-cCCCHHHHHH--HHHHHH--CCCcCcCcCchhCHhh
Confidence 46799999999999876 6999966543 222222 2368999999876543
No 104
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.51 E-value=0.65 Score=37.10 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=33.5
Q ss_pred ecCCCCccccccc--ccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCC
Q 007373 362 LRCPMSGSRIKVA--GRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLE 413 (606)
Q Consensus 362 L~CPls~~ri~~P--~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~ 413 (606)
..|||-+..+..+ ++...|.|.-|.+ +..||..+ ..||+|.+.+.+.
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----RTCPICRADSGPS 73 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----SSCTTTCCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----CcCcCcCCcCCCC
Confidence 4688888877766 4556799987766 45566543 4799999887653
No 105
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.38 E-value=1.2 Score=36.34 Aligned_cols=51 Identities=18% Similarity=0.426 Sum_probs=37.1
Q ss_pred eecCCCCcccccc----cccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCCCCC
Q 007373 361 NLRCPMSGSRIKV----AGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLEN 414 (606)
Q Consensus 361 sL~CPls~~ri~~----P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (606)
.+.||+-+..+.. |+.. .|.|.-|.+- ..|+... .....||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS--INGVRCPFCSKITRITS 70 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBCCSS
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC--CCCcCCCCCCCcccchh
Confidence 4779999999887 6654 7999977653 3444422 34689999999887654
No 106
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=81.06 E-value=1.2 Score=32.96 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=29.7
Q ss_pred cCCCCcccccc---cccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCC
Q 007373 363 RCPMSGSRIKV---AGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNY 410 (606)
Q Consensus 363 ~CPls~~ri~~---P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~ 410 (606)
.|||-+..+.. +.+...|.|.-|.+ +..|+... ..||+|.+.+
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 53 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPS 53 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSS
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcC
Confidence 57777777644 45556799987766 34555543 7899999875
No 107
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.71 E-value=0.9 Score=34.56 Aligned_cols=45 Identities=31% Similarity=0.614 Sum_probs=32.5
Q ss_pred ecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCC
Q 007373 362 LRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (606)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (606)
|.|||-...+..|+. ..|.|.-|.+-. ......||+|.+.+....
T Consensus 7 ~~C~IC~~~~~~p~~-l~CgH~fC~~Ci-------~~~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 7 LRCQQCQAEAKCPKL-LPCLHTLCSGCL-------EASGMQCPICQAPWPLGA 51 (56)
T ss_dssp SSCSSSCSSCBCCSC-STTSCCSBTTTC-------SSSSSSCSSCCSSSSCCS
T ss_pred CCceEeCCccCCeEE-cCCCCcccHHHH-------ccCCCCCCcCCcEeecCC
Confidence 679999999999955 569998665431 113568999998876543
No 108
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.06 E-value=1.2 Score=35.36 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=32.0
Q ss_pred eecCCCCcccccccccC--CCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCC
Q 007373 361 NLRCPMSGSRIKVAGRF--KPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg--~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
...|||-+..+..|... ..|.|.-|++ +..|+..+ ..||+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 45799998888766554 2799986654 44555432 28999998764
No 109
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.03 E-value=2.7 Score=32.21 Aligned_cols=32 Identities=28% Similarity=0.543 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHhCCCCCCChHHHHHHHHHhcc
Q 007373 15 RIKELKDVLTQLGLSKQGKKQDLVDRILAILS 46 (606)
Q Consensus 15 Ri~ELk~lL~~lglsk~GkK~eL~~Ril~ll~ 46 (606)
--.|||.-|..+|-+-+|...||+||+-.|..
T Consensus 12 ~~~ELQaKLaE~GAPi~g~REElvdRLk~Y~~ 43 (58)
T 2do5_A 12 AAQELQAKLAEIGAPIQGNREELVERLQSYTR 43 (58)
T ss_dssp CHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCcccccHHHHHHHHHHHhh
Confidence 35799999999999999999999999988744
No 110
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.72 E-value=1.8 Score=33.18 Aligned_cols=46 Identities=20% Similarity=0.519 Sum_probs=34.3
Q ss_pred ceeeecCCCCcccccccccCCCCCcccccc-HHHHHHHhcCCCeeeccCC
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPIC 406 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC 406 (606)
+.-.+.|||-+..+..|+.. .|.|.-|.+ +..|+.. ......||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET--SCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH--CSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc--CCCCCcCcCC
Confidence 45568899999999999987 899997765 3344432 3356789998
No 111
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.94 E-value=3.1 Score=30.94 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=31.8
Q ss_pred eeeecCCCCcccccccccCCCCCccccccHHHHHHHhc-CCCeeeccCC
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQ-RSRKWQCPIC 406 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~-~~~~W~CPiC 406 (606)
.-.+.|||-...++.|+. ..|.|.-|.+ =+..... ......||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~--Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVI-IECGHNFCKA--CITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCC-CSSCCCCCHH--HHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEe-CCCCCccCHH--HHHHHHHhcCCCCCCCCC
Confidence 345789999999999977 5799996554 3333322 2356789998
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=74.89 E-value=1.7 Score=37.78 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=37.5
Q ss_pred eecCCCCcccccccc------cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007373 361 NLRCPMSGSRIKVAG------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 361 sL~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
.+.|||-+..++.|+ ....|.|.-|.+ +..||.. .-.||+|.+.+...++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 64 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-----CCCCCCCCCcCcccccc
Confidence 367999999999983 567899997665 3345432 23999999998766653
No 113
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=70.72 E-value=2.3 Score=33.09 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=30.8
Q ss_pred eecCCCCccccc--ccccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCC
Q 007373 361 NLRCPMSGSRIK--VAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 361 sL~CPls~~ri~--~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 412 (606)
...|||-+..+. .+++...|.|.-|++ +..|+..+ ..||+|.+.+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----KKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----CCCcCcCccccC
Confidence 356888877664 345556799986655 34455432 359999987653
No 114
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=69.91 E-value=3.7 Score=37.18 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=33.2
Q ss_pred HHHhhccHHHHHHHHHHhCCCCCC--ChHHHHHHHHHhccc
Q 007373 9 EKLAHFRIKELKDVLTQLGLSKQG--KKQDLVDRILAILSD 47 (606)
Q Consensus 9 ~~L~~fRi~ELk~lL~~lglsk~G--kK~eL~~Ril~ll~~ 47 (606)
..|...-+.||+.+...||+.... +|+||+.+||.-+..
T Consensus 4 ~eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~~~~ 44 (130)
T 1a62_A 4 TELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAK 44 (130)
T ss_dssp HHHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHh
Confidence 346788999999999999999776 999999999875543
No 115
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=69.54 E-value=5.6 Score=32.56 Aligned_cols=51 Identities=20% Similarity=0.482 Sum_probs=34.1
Q ss_pred ecCCCCccccccc-ccCCC--CCccccccHHHHHHHhcCCCeeeccCCCCCCCCCCe
Q 007373 362 LRCPMSGSRIKVA-GRFKP--CVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENI 415 (606)
Q Consensus 362 L~CPls~~ri~~P-~Rg~~--C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L 415 (606)
+.|||-...+.++ .+... |-|.-|.+- +..+.. .....||+|.+.+....+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~C--l~~~~~-~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFC--WHRIRT-DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHH--HHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHH--HHHHHh-cCCCCCCCCCCccCCCch
Confidence 5699998877653 33333 999866543 333322 246899999999876655
No 116
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=68.31 E-value=2.8 Score=35.97 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=32.7
Q ss_pred cCCCCcccccccc-----------------cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCC
Q 007373 363 RCPMSGSRIKVAG-----------------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 363 ~CPls~~ri~~P~-----------------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
.|||-+..+..|. +...|.|.-|++ +..||....+...-.||+|.+.+.
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4788777776554 246799986554 456665444345679999997763
No 117
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.09 E-value=3 Score=32.02 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=33.7
Q ss_pred eeecCCCCcccccccc------cCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCC
Q 007373 360 VNLRCPMSGSRIKVAG------RFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 360 isL~CPls~~ri~~P~------Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
-.+.|||-+..+..|. ....|.|.-|.+- ..|+.. .-.||+|.+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 3467999999998884 4578999866553 344442 348999998864
No 118
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=66.08 E-value=5.4 Score=29.36 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=28.4
Q ss_pred ecCCCCcccccc---cccCCCCCccccccH-HHHHHHhcCCCeeeccCCCCCCC
Q 007373 362 LRCPMSGSRIKV---AGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 362 L~CPls~~ri~~---P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
..|||-+..+.. +.....|.|.-|.+- ..|+. ....||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-----SHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-----TCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-----cCCcCcCCCCEeE
Confidence 357777777665 444446999866553 23332 2468999998764
No 119
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.88 E-value=1.9 Score=34.59 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=34.0
Q ss_pred ceeeecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCCC
Q 007373 358 IGVNLRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~~ 412 (606)
+.-.+.||+-+..+..|+. ..|.|. -|.+=.. ....||+|.+.+..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAE--------AVDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH--------HCSBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh--------CCCCCccCCceecC
Confidence 3445789999999988876 589998 6665431 13789999987743
No 120
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.17 E-value=0.68 Score=40.71 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=28.4
Q ss_pred CCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007373 124 TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 124 ~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CR 167 (606)
.+.||.|+. |...+|..|+++.....+.+ ....|+|+.|+
T Consensus 23 ~~~Ll~C~~--C~~~~H~~Cl~~~~~~~~~~--~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCAD--CGNSGHPSCLKFSPELTVRV--KALRWQCIECK 62 (112)
T ss_dssp CCCCEECTT--TCCEECHHHHTCCHHHHHHH--HTSCCCCTTTC
T ss_pred chhceEhhh--cCCCCCCchhcCCHHHHHHh--hccccccccCC
Confidence 468999999 99999999997642111111 13478898887
No 121
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=62.69 E-value=5.2 Score=40.38 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=29.8
Q ss_pred hhccHHHHHHHHHHhCCCCCCChHHHHHHHHHh
Q 007373 12 AHFRIKELKDVLTQLGLSKQGKKQDLVDRILAI 44 (606)
Q Consensus 12 ~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~l 44 (606)
..+.++-||.|....|++.+|+|.+|++|+.+.
T Consensus 2 ~~lk~~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 2 ATVKLSFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp -CCCHHHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 456789999999999999999999999999885
No 122
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=61.88 E-value=2 Score=34.50 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=31.6
Q ss_pred eecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
.+.||+-+..+..|+-. .|.|. -|++-..- ...||+|.+.+.
T Consensus 24 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~--------~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFV-PCGHLVTCKQCAEA--------VDKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTT--------CSBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCEEEc-CCCChhHHHHhhhc--------CccCCCcCcCcc
Confidence 46799999988888764 89998 67655321 189999998764
No 123
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=61.11 E-value=10 Score=33.89 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=34.8
Q ss_pred HHHHhhccHHHHHHHHHHhCCCCCC--ChHHHHHHHHHhcc
Q 007373 8 KEKLAHFRIKELKDVLTQLGLSKQG--KKQDLVDRILAILS 46 (606)
Q Consensus 8 k~~L~~fRi~ELk~lL~~lglsk~G--kK~eL~~Ril~ll~ 46 (606)
+..|+.+++++|++-|..-+++..| .|.|||+=||.-..
T Consensus 73 ~~~l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl~~~~ 113 (120)
T 1y02_A 73 REELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQP 113 (120)
T ss_dssp HHHHHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHHTCC
T ss_pred HHHHhcccHHHHHHHHHhCCCCcccceeHHHHHHHHHhcCC
Confidence 5789999999999999999999888 69999998887663
No 124
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=60.90 E-value=3.2 Score=35.95 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=37.6
Q ss_pred ecCCCCcccccccc------cCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCee
Q 007373 362 LRCPMSGSRIKVAG------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (606)
Q Consensus 362 L~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (606)
+.||+-...++.|. ....|.|.-|++ +..||.. ...||+|...+..++|+
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-----CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-----CCCCCCCCCcCChhcce
Confidence 56999888888773 445899998876 4566653 24899999999887764
No 125
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=57.32 E-value=4.2 Score=31.66 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=29.9
Q ss_pred cCCCCccccccccc-CCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCC
Q 007373 363 RCPMSGSRIKVAGR-FKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNY 410 (606)
Q Consensus 363 ~CPls~~ri~~P~R-g~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~ 410 (606)
.|++-+.+.+.++= ...|.|+ -|++=..-+.. + .++||+|.+++
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~--~--~~~CPiCR~~i 54 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK--A--GASCPICKKEI 54 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH--T--TCBCTTTCCBC
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH--h--CCcCCCcCchh
Confidence 58888777665542 2389998 57766554432 2 38999999887
No 126
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=56.88 E-value=11 Score=35.34 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=38.4
Q ss_pred ccHHHHHHHHhh-ccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccc
Q 007373 2 DSVASCKEKLAH-FRIKELKDVLTQLGLSKQGKKQDLVDRILAILSD 47 (606)
Q Consensus 2 ~~~~~~k~~L~~-fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~ 47 (606)
+++=.+|++|.. .-..||+.+|.+=+..-.|-+.+|++|+...+--
T Consensus 29 ~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm~F 75 (160)
T 2riq_A 29 DLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVF 75 (160)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Confidence 456678999986 9999999999999988889999999988655443
No 127
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.76 E-value=4.9 Score=32.70 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=20.3
Q ss_pred CCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCCCCe
Q 007373 379 PCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENI 415 (606)
Q Consensus 379 ~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L 415 (606)
.|.|.-+++ +..||..+ -.||+|.+.+.+.++
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN-----NRCPLCQQDWVVQRI 79 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC-----CBCTTTCCBCCEEEE
T ss_pred CCCCccChHHHHHHHHhC-----CCCCCcCCCcchhhc
Confidence 599984433 33444432 289999998876543
No 128
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.77 E-value=2.5 Score=32.93 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=32.4
Q ss_pred eecCCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCCCC
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (606)
.+.|||-+..+.. ....|.|.-|.+ =+.... .....||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~--Ci~~~~--~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQK--CIDKWS--DRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHH--HHHHSS--CCCSSCHHHHHCTTCCC
T ss_pred CCCCeeCCcCccC--cccCCCCcccHH--HHHHHH--HCcCcCCCcCCcccCCC
Confidence 5679998888776 567899985543 333222 25678999988775443
No 129
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=50.58 E-value=7.1 Score=30.41 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=30.2
Q ss_pred cCCCCccccccccc-CCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007373 363 RCPMSGSRIKVAGR-FKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 363 ~CPls~~ri~~P~R-g~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
.|++-+.+.+.++- ...|.|+ -|++=..-+.. ..+.||+|.+++.
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK----RNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH----TTCCCTTTCCCCC
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH----cCCcCCCcCcchh
Confidence 58888877777753 2379999 47664443321 2478999998873
No 130
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=47.53 E-value=5.1 Score=35.17 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=27.6
Q ss_pred CCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccc
Q 007373 124 TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (606)
Q Consensus 124 ~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CR 167 (606)
.+.||.|+. |...+|..|+.+....++.++ ...|+|+.|+
T Consensus 20 ~~~Li~C~~--C~~~~H~~Cl~~~~~~~~~~~--~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCAD--CGRSGHPTCLQFTLNMTEAVK--TYKWQCIECK 59 (114)
T ss_dssp CCCCEECSS--SCCEECTTTTTCCHHHHHHHH--HTTCCCGGGC
T ss_pred CCCCeEeCC--CCCccchhhCCChhhhhhccC--CCccCccccC
Confidence 468999999 999999999986522100111 2368888775
No 131
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=45.64 E-value=10 Score=31.33 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=29.1
Q ss_pred eecCCCCcccccc--cccCCCCCcccccc-HHHHHHHhcCCCeeeccCCCCCCCC
Q 007373 361 NLRCPMSGSRIKV--AGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 361 sL~CPls~~ri~~--P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 412 (606)
...|||-+..+.. +.+...|.|.-|++ +..||.. .-.||+|.+.+.+
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-----SGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-----TCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-----CCcCcCcCccCCC
Confidence 3468887766644 23334599976554 3345432 2389999988754
No 132
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=45.47 E-value=2.6 Score=33.20 Aligned_cols=14 Identities=29% Similarity=1.037 Sum_probs=11.0
Q ss_pred cCCCeeeccCCCCC
Q 007373 396 QRSRKWQCPICLRN 409 (606)
Q Consensus 396 ~~~~~W~CPiC~k~ 409 (606)
...++|+||+|+..
T Consensus 29 ~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 29 YRAKLWACNFCYQR 42 (59)
T ss_dssp GGGTEEECSSSCCE
T ss_pred CCCCEEEcccCCCc
Confidence 45679999999853
No 133
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=43.56 E-value=25 Score=35.44 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=37.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccc
Q 007373 4 VASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSD 47 (606)
Q Consensus 4 ~~~~k~~L~~fRi~ELk~lL~~lglsk~GkK~eL~~Ril~ll~~ 47 (606)
++.+..+++...+.||+..|..+||+..|.|..|..|+..+...
T Consensus 19 ~~~~~~~~~~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~~ 62 (299)
T 1zbh_A 19 IAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKK 62 (299)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHhhchhhhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 35566778888899999999999999999999999998776654
No 134
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=43.11 E-value=11 Score=32.87 Aligned_cols=44 Identities=36% Similarity=0.705 Sum_probs=34.1
Q ss_pred CCCCcccccccccCCCCCccccccHHHHHHHhcCCCeeeccCCCCCC
Q 007373 364 CPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNY 410 (606)
Q Consensus 364 CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~ 410 (606)
||.-..+|++=+|-..|+|.-|+|-..-... ...=.||.|..++
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~---~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEK---KGDKMCPGCSDPV 47 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHh---ccCCCCcCcCCee
Confidence 7777888999999999999999987654332 2345799998665
No 135
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=43.06 E-value=6.1 Score=32.24 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=29.5
Q ss_pred ecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007373 362 LRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
+.|++-+.....|+- ..|.|. -|++=.. ..|.||+|.+.+.
T Consensus 19 ~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINSTF-CPCGHTVCCESCAA--------QLQSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCEEE-ETTCBCCBCHHHHT--------TCSBCTTTCCBCC
T ss_pred CEeEEeCcccCcEEE-ECCCCHHHHHHHHH--------hcCcCCCCCchhh
Confidence 468888888777755 479998 5665432 2379999998764
No 136
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.44 E-value=5.8 Score=32.99 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=38.3
Q ss_pred eecCCCCcccccccccC--CCCCcccccc-HHHHHHHh--cC-CCeeeccC--CCCC--CCCCC
Q 007373 361 NLRCPMSGSRIKVAGRF--KPCVHMGCFD-LDVFVELN--QR-SRKWQCPI--CLRN--YSLEN 414 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg--~~C~HlQCFD-l~~fL~~n--~~-~~~W~CPi--C~k~--~~~~~ 414 (606)
.+.|||-+..+..|.-. ..|.|.-|.+ +..|+... +. .....||. |... +.+++
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~ 68 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE 68 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH
Confidence 35699998888777543 4799998886 57777754 22 24689999 9988 55443
No 137
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=42.16 E-value=16 Score=29.67 Aligned_cols=40 Identities=20% Similarity=0.566 Sum_probs=26.4
Q ss_pred CCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCCCce
Q 007373 125 ESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFW 175 (606)
Q Consensus 125 ~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl~r~dPF~ 175 (606)
...|||+.+.|.+|-...=. +.. ..+|+.|||.+ ..||.+
T Consensus 16 ~~WVQCd~p~C~KWR~LP~~-~~~------~~lpd~W~C~m----N~d~~~ 55 (69)
T 2e61_A 16 LVWVQCSFPNCGKWRRLCGN-IDP------SVLPDNWSCDQ----NTDVQY 55 (69)
T ss_dssp CCEEECSSTTTCCEEECCSS-CCT------TTSCTTCCGGG----CSCGGG
T ss_pred CeEEEeCccccCcccCCccc-ccc------ccCCCcCEeCC----CCCCcc
Confidence 57999997779999876321 111 12578999965 346655
No 138
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.18 E-value=24 Score=29.85 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=36.2
Q ss_pred CceeccCCCCcC------CCCeeeecCCCCC-CcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 112 TKVCCPCGSSLE------TESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 112 ~~~rCiCg~s~~------~~~mI~C~~~~C~-~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
+...|+|+.--. .-.+|-|.. |. ..-|..|..+... +..|.|..|+.
T Consensus 25 dA~~Clc~~GR~~~~~~~~W~L~lC~~--Cgs~gtH~~Cs~l~~~--------~~~weC~~C~~ 78 (85)
T 1weq_A 25 DAPICLYEQGRDSFEDEGRWRLILCAT--CGSHGTHRDCSSLRPN--------SKKWECNECLP 78 (85)
T ss_dssp CCSCCCSTTCSSCCBSSSTTBCEECSS--SCCCEECSGGGTCCTT--------CSCCCCTTTSC
T ss_pred CccccCCCCCcccccCCCCEEEEeCcc--cCCchhHHHHhCCcCC--------CCCEECCcCcc
Confidence 478899976322 256999999 98 6679999987532 57999999985
No 139
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=41.12 E-value=7.1 Score=29.29 Aligned_cols=12 Identities=33% Similarity=1.127 Sum_probs=9.4
Q ss_pred CCeeeccCCCCC
Q 007373 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 346999999864
No 140
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=40.64 E-value=8.4 Score=31.88 Aligned_cols=10 Identities=50% Similarity=1.630 Sum_probs=8.8
Q ss_pred CCeeeccCCC
Q 007373 398 SRKWQCPICL 407 (606)
Q Consensus 398 ~~~W~CPiC~ 407 (606)
..+|.||||.
T Consensus 15 ~~tWVCpICs 24 (76)
T 2j9u_B 15 VSTWVCPICM 24 (76)
T ss_dssp CEEEECTTTC
T ss_pred ccceECcccc
Confidence 4689999997
No 141
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.35 E-value=15 Score=29.04 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=27.8
Q ss_pred ecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007373 362 LRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
..|++-+.+...++ ...|.|+ -|.+=.. ..++||+|.+.+.
T Consensus 16 ~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~--------~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 16 KDCVVCQNGTVNWV-LLPCRHTCLCDGCVK--------YFQQCPMCRQFVQ 57 (68)
T ss_dssp SCCSSSSSSCCCCE-ETTTTBCCSCTTHHH--------HCSSCTTTCCCCC
T ss_pred CCCCCcCcCCCCEE-EECCCChhhhHHHHh--------cCCCCCCCCcchh
Confidence 45888777665433 3578888 6666544 1389999998763
No 142
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=40.33 E-value=6.6 Score=41.14 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=33.5
Q ss_pred eeeecCCCCcccccccccCCCCCcc-ccccHHHHHHHhcCCCeeeccCCCCCCC
Q 007373 359 GVNLRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (606)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (606)
.-.+.||+-...+..|+.- .|.|. -|.+-..- .+.||+|...+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~--------~~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPS--------LRKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGG--------CSBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEc-CCCChhHhHHHHhc--------CCcCCCCCCCcc
Confidence 3457899999999988875 89998 66654321 179999998764
No 143
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=35.85 E-value=4.5 Score=34.03 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=13.4
Q ss_pred eeccCCCCCCCCCCee
Q 007373 401 WQCPICLRNYSLENII 416 (606)
Q Consensus 401 W~CPiC~k~~~~~~L~ 416 (606)
-+||+|++++.+.+|+
T Consensus 9 ~~~PlCG~~L~W~eLI 24 (95)
T 2k5c_A 9 AKCPICGSPLKWEELI 24 (95)
T ss_dssp EECSSSCCEECHHHHH
T ss_pred ccCCcCCCccCHHHHH
Confidence 6899999999887664
No 144
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=33.20 E-value=11 Score=29.15 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007373 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 356999999864
No 145
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=33.08 E-value=16 Score=38.86 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=35.6
Q ss_pred eecCCCCcccccccccCCCCCccccccHH-HHHHHhcCCCeeeccCCCCCCCCCC
Q 007373 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQRSRKWQCPICLRNYSLEN 414 (606)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (606)
.+.||+-...+..|+. ..|.|.-|.+-- .|+.. ..-.||+|.+.+....
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~----~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQES----EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHH----TCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhc----CCCCCCCCCCccCCce
Confidence 3689999999988866 589998776543 34432 3458999999876544
No 146
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=32.80 E-value=13 Score=28.44 Aligned_cols=12 Identities=33% Similarity=1.226 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007373 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 346999999864
No 147
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.61 E-value=13 Score=28.84 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=9.6
Q ss_pred CCeeeccCCCCC
Q 007373 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 346999999865
No 148
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=31.46 E-value=12 Score=28.55 Aligned_cols=12 Identities=33% Similarity=1.132 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007373 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 457999999864
No 149
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=31.30 E-value=27 Score=31.71 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=25.8
Q ss_pred HhhccHHHHHHHHHHhCCC--CCCChHHHHHH
Q 007373 11 LAHFRIKELKDVLTQLGLS--KQGKKQDLVDR 40 (606)
Q Consensus 11 L~~fRi~ELk~lL~~lgls--k~GkK~eL~~R 40 (606)
|..+-+.|||..|..+|+. ++-+|.||+.-
T Consensus 89 l~~lTV~ELKa~Lde~gIe~~ssakKaELiaL 120 (131)
T 2out_A 89 LNTFTVEQLKAQLTERGITFKQSATKAELIAL 120 (131)
T ss_dssp STTCCSHHHHHHHHHHTCCCSSSCCSHHHHHH
T ss_pred cccccHHHHHHHHHHcCCcccccCCHHHHHHH
Confidence 4567899999999999997 88899999753
No 150
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=29.83 E-value=15 Score=30.81 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=9.4
Q ss_pred CCeeeccCCCCC
Q 007373 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 58 PddW~CPvCga~ 69 (81)
T 2kn9_A 58 PDDWSCPDCGAA 69 (81)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 346999999864
No 151
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.00 E-value=15 Score=29.91 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=9.6
Q ss_pred CCeeeccCCCCC
Q 007373 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 346999999865
No 152
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=26.93 E-value=34 Score=31.43 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=34.6
Q ss_pred ceec-cCCCCcCCCCeeeecCCCCCCcccccccccCCCC--CCCCCCCCCccccccccc
Q 007373 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKP--TEGNPPVPELFYCEICRL 168 (606)
Q Consensus 113 ~~rC-iCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~--~~g~p~~p~~fyCe~CRl 168 (606)
.-+| +|+. .|.++-|+. |..-+|..|+..+-.+ ++.+..-.+.|.|+.|+.
T Consensus 63 ~d~C~vC~~---GG~LlcCD~--Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAE---GGNLICCDF--CHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCC---CSSEEECSS--SCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCC---CCcEEeCCC--CCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456 4664 678999998 9999999999854321 000000146899999986
No 153
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.45 E-value=20 Score=30.37 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007373 398 SRKWQCPICLRN 409 (606)
Q Consensus 398 ~~~W~CPiC~k~ 409 (606)
...|.||+|+..
T Consensus 66 PddW~CPvCga~ 77 (87)
T 1s24_A 66 PDDWCCPDCGAT 77 (87)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCCCCCCCCC
Confidence 346999999864
No 154
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=24.30 E-value=36 Score=29.31 Aligned_cols=33 Identities=18% Similarity=0.492 Sum_probs=18.6
Q ss_pred cCCCCCccccccHHHHHHHhcCCCeeeccCCCCCCCC
Q 007373 376 RFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 376 Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~ 412 (606)
+-..|.|. |-..=...--.+ .-.||+|.+...+
T Consensus 69 ~~~~C~H~--FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 69 AWGVCNHA--FHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp EEETTSCE--EEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred eecccCcE--ECHHHHHHHHHc--CCcCcCCCCccee
Confidence 33568887 433333222122 3579999987654
No 155
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.21 E-value=24 Score=23.82 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=9.7
Q ss_pred CeeeccCCCCCC
Q 007373 399 RKWQCPICLRNY 410 (606)
Q Consensus 399 ~~W~CPiC~k~~ 410 (606)
+++.||+|...+
T Consensus 2 ~k~~CpvCk~q~ 13 (28)
T 2jvx_A 2 SDFCCPKCQYQA 13 (28)
T ss_dssp CCEECTTSSCEE
T ss_pred CcccCccccccC
Confidence 579999998654
No 156
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.74 E-value=30 Score=20.35 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.3
Q ss_pred eeeccCCCCCCCC
Q 007373 400 KWQCPICLRNYSL 412 (606)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (606)
.+.|+.|++.+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 4789999987654
No 157
>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress, phosphoprotein, neurotrophic factor, sialic acid, glycoprotein, growth factor, hormone; 2.80A {Homo sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
Probab=23.25 E-value=10 Score=35.42 Aligned_cols=37 Identities=32% Similarity=0.619 Sum_probs=24.6
Q ss_pred HhhccHHHHHHHHHHhCCCCCC--ChHHHHHHHHHhccc
Q 007373 11 LAHFRIKELKDVLTQLGLSKQG--KKQDLVDRILAILSD 47 (606)
Q Consensus 11 L~~fRi~ELk~lL~~lglsk~G--kK~eL~~Ril~ll~~ 47 (606)
|..+||+|||.||..-|..=.| -|.+.+.||.++-.-
T Consensus 108 l~KlrVkeLK~IL~d~g~~C~GC~EK~DfV~ri~el~pk 146 (158)
T 2w51_A 108 LKKLRVKELKKILDDWGETCKGCAEKSDYIRKINELMPK 146 (158)
T ss_dssp CCTTHHHHHHHHTTCCCTTCSSCHHHHTTC---------
T ss_pred hhhccHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhccc
Confidence 5678999999999999999777 488888888777554
No 158
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.21 E-value=24 Score=20.91 Aligned_cols=13 Identities=15% Similarity=0.756 Sum_probs=10.3
Q ss_pred CeeeccCCCCCCC
Q 007373 399 RKWQCPICLRNYS 411 (606)
Q Consensus 399 ~~W~CPiC~k~~~ 411 (606)
+.|.|++|++.+.
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 3589999998764
No 159
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=21.90 E-value=72 Score=34.38 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=32.8
Q ss_pred HHHhhccHHHHHHHHHHhCCC--CCCChHHHHHHHHHhcc
Q 007373 9 EKLAHFRIKELKDVLTQLGLS--KQGKKQDLVDRILAILS 46 (606)
Q Consensus 9 ~~L~~fRi~ELk~lL~~lgls--k~GkK~eL~~Ril~ll~ 46 (606)
..|...-+.||+.+...+|+. ..=|||||+..||....
T Consensus 11 ~~l~~~~~~~l~~~a~~~~~~~~~~~~k~~l~~~~~~~~~ 50 (427)
T 3l0o_A 11 SELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQT 50 (427)
T ss_dssp HHHHHSCHHHHHHHHHHTTCTTGGGSCHHHHHHHHHHGGG
T ss_pred HHHhcCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHH
Confidence 468889999999999999998 46799999999987644
No 160
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.56 E-value=32 Score=22.05 Aligned_cols=14 Identities=43% Similarity=0.997 Sum_probs=11.2
Q ss_pred CeeeccCCCCCCCC
Q 007373 399 RKWQCPICLRNYSL 412 (606)
Q Consensus 399 ~~W~CPiC~k~~~~ 412 (606)
..++|++|++.+.-
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 46999999988753
No 161
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.38 E-value=32 Score=20.36 Aligned_cols=13 Identities=23% Similarity=0.894 Sum_probs=10.2
Q ss_pred eeeccCCCCCCCC
Q 007373 400 KWQCPICLRNYSL 412 (606)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (606)
.+.|++|++.+.-
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4789999987643
No 162
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.37 E-value=35 Score=20.18 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.3
Q ss_pred eeeccCCCCCCCC
Q 007373 400 KWQCPICLRNYSL 412 (606)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (606)
.+.|++|++.+.-
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 4789999988753
No 163
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.63 E-value=27 Score=28.30 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=13.8
Q ss_pred hcCCCeeeccCCCCCCCC
Q 007373 395 NQRSRKWQCPICLRNYSL 412 (606)
Q Consensus 395 n~~~~~W~CPiC~k~~~~ 412 (606)
....++-.||+|++++.+
T Consensus 4 m~~~~~~~CP~Cgkp~~W 21 (68)
T 1lv3_A 4 MSETITVNCPTCGKTVVW 21 (68)
T ss_dssp CCCCCEEECTTTCCEEEC
T ss_pred CCCCCcCcCCCCCCcccc
Confidence 344678899999999754
No 164
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.05 E-value=86 Score=25.40 Aligned_cols=43 Identities=28% Similarity=0.504 Sum_probs=29.1
Q ss_pred eccCCCCcCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCccccccccc
Q 007373 115 CCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (606)
Q Consensus 115 rCiCg~s~~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~g~p~~p~~fyCe~CRl 168 (606)
-.+|-..+..+ +.|.. |+..+|..|+..--+. -..-.||.||-
T Consensus 18 C~IC~~~i~~g--~~C~~--C~h~fH~~Ci~kWl~~-------~~~~~CP~Cr~ 60 (74)
T 2ct0_A 18 CNICHSLLIQG--QSCET--CGIRMHLPCVAKYFQS-------NAEPRCPHCND 60 (74)
T ss_dssp CSSSCCBCSSS--EECSS--SCCEECHHHHHHHSTT-------CSSCCCTTTCS
T ss_pred CcchhhHcccC--CccCC--CCchhhHHHHHHHHHh-------cCCCCCCCCcC
Confidence 33788766533 57885 9999999998643222 11357999984
Done!