Query 007374
Match_columns 606
No_of_seqs 233 out of 1481
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 22:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2446 Glucose-6-phosphate is 100.0 8E-155 2E-159 1203.1 37.2 534 43-591 2-544 (546)
2 PTZ00430 glucose-6-phosphate i 100.0 5E-152 1E-156 1254.5 52.9 547 44-590 2-552 (552)
3 PLN02649 glucose-6-phosphate i 100.0 5E-150 1E-154 1241.6 52.9 551 44-594 7-558 (560)
4 PRK00179 pgi glucose-6-phospha 100.0 2E-146 4E-151 1212.3 51.0 534 43-592 3-547 (548)
5 PRK14095 pgi glucose-6-phospha 100.0 1E-145 3E-150 1197.8 48.8 518 44-589 6-532 (533)
6 PF00342 PGI: Phosphoglucose i 100.0 2E-133 5E-138 1101.3 32.5 481 89-585 1-486 (486)
7 PRK14096 pgi glucose-6-phospha 100.0 3E-119 6E-124 988.5 43.0 443 80-562 16-463 (528)
8 COG0166 Pgi Glucose-6-phosphat 100.0 4E-109 8E-114 894.8 39.7 441 85-581 3-445 (446)
9 PRK14097 pgi glucose-6-phospha 100.0 1.2E-94 2.7E-99 787.5 39.0 420 84-562 2-433 (448)
10 PRK00973 glucose-6-phosphate i 100.0 2.3E-92 5E-97 767.3 38.7 410 86-562 3-428 (446)
11 PRK03868 glucose-6-phosphate i 100.0 1.7E-88 3.7E-93 732.6 30.4 346 184-562 58-408 (410)
12 PRK09533 bifunctional transald 100.0 7.6E-65 1.6E-69 587.1 39.1 335 152-566 431-772 (948)
13 cd05016 SIS_PGI_2 Phosphogluco 100.0 3.2E-50 7E-55 384.7 13.3 163 374-560 1-164 (164)
14 cd05015 SIS_PGI_1 Phosphogluco 100.0 1.2E-33 2.5E-38 269.5 17.5 156 159-327 2-158 (158)
15 PRK08674 bifunctional phosphog 100.0 1.1E-31 2.4E-36 284.8 27.0 286 183-557 33-335 (337)
16 cd05798 SIS_TAL_PGI SIS_TAL_PG 99.9 7.6E-28 1.7E-32 220.7 11.0 126 377-560 3-129 (129)
17 TIGR02128 G6PI_arch bifunction 99.5 3.3E-12 7.2E-17 134.5 28.1 278 184-556 21-306 (308)
18 cd05017 SIS_PGI_PMI_1 The memb 99.2 2E-10 4.2E-15 104.4 11.2 108 186-320 1-111 (119)
19 PRK11382 frlB fructoselysine-6 98.1 8.7E-05 1.9E-09 79.5 16.6 106 161-294 29-136 (340)
20 COG2222 AgaS Predicted phospho 98.0 2.9E-05 6.3E-10 83.1 10.8 106 161-294 24-131 (340)
21 TIGR02815 agaS_fam putative su 98.0 4.3E-05 9.4E-10 82.9 11.2 110 160-295 26-139 (372)
22 cd05710 SIS_1 A subgroup of th 97.8 0.00016 3.5E-09 65.8 11.0 114 186-327 1-116 (120)
23 cd05005 SIS_PHI Hexulose-6-pho 97.7 0.00061 1.3E-08 66.1 12.6 107 161-307 20-128 (179)
24 cd05008 SIS_GlmS_GlmD_1 SIS (S 97.7 0.00022 4.8E-09 64.6 9.0 87 187-294 2-90 (126)
25 TIGR00441 gmhA phosphoheptose 97.6 0.00044 9.6E-09 65.8 10.5 121 165-312 2-137 (154)
26 cd05013 SIS_RpiR RpiR-like pro 97.6 0.0017 3.7E-08 58.8 13.8 111 163-308 2-114 (139)
27 TIGR03127 RuMP_HxlB 6-phospho 97.6 0.00058 1.2E-08 66.1 11.2 106 162-307 18-125 (179)
28 PRK13938 phosphoheptose isomer 97.6 0.0012 2.5E-08 65.8 13.3 119 165-309 36-168 (196)
29 COG0794 GutQ Predicted sugar p 97.5 0.0011 2.4E-08 65.9 12.1 96 186-306 41-138 (202)
30 cd05006 SIS_GmhA Phosphoheptos 97.5 0.0016 3.5E-08 63.0 12.7 129 161-312 16-159 (177)
31 PRK11557 putative DNA-binding 97.4 0.0014 3E-08 67.9 12.4 101 162-293 116-218 (278)
32 cd05014 SIS_Kpsf KpsF-like pro 97.4 0.00079 1.7E-08 61.1 8.6 87 186-293 2-90 (128)
33 PRK15482 transcriptional regul 97.3 0.0022 4.9E-08 66.7 12.1 111 162-307 123-235 (285)
34 PRK13937 phosphoheptose isomer 97.2 0.0041 8.9E-08 61.2 11.8 95 185-293 39-149 (188)
35 PRK00414 gmhA phosphoheptose i 97.2 0.0052 1.1E-07 60.8 12.4 105 185-307 45-164 (192)
36 PRK00331 glucosamine--fructose 97.2 0.0054 1.2E-07 70.7 14.3 91 183-294 288-380 (604)
37 COG1737 RpiR Transcriptional r 97.1 0.0039 8.4E-08 65.2 11.8 188 66-294 23-221 (281)
38 PLN02981 glucosamine:fructose- 97.1 0.0021 4.5E-08 75.2 10.6 91 183-294 362-454 (680)
39 PRK11337 DNA-binding transcrip 97.1 0.015 3.2E-07 60.8 15.9 112 162-308 128-241 (292)
40 PRK10886 DnaA initiator-associ 97.1 0.0072 1.6E-07 60.1 12.9 110 185-309 42-167 (196)
41 cd04795 SIS SIS domain. SIS (S 97.1 0.0034 7.3E-08 52.7 8.8 80 187-286 1-81 (87)
42 PRK11543 gutQ D-arabinose 5-ph 97.1 0.0033 7.1E-08 66.4 10.8 103 162-294 29-133 (321)
43 TIGR01135 glmS glucosamine--fr 97.1 0.0055 1.2E-07 70.7 13.4 91 183-294 290-382 (607)
44 PF01380 SIS: SIS domain SIS d 97.0 0.0037 8.1E-08 56.5 9.1 100 185-308 6-107 (131)
45 PTZ00295 glucosamine-fructose- 97.0 0.0021 4.6E-08 74.6 9.2 92 183-295 321-414 (640)
46 PRK11302 DNA-binding transcrip 97.0 0.0087 1.9E-07 62.0 12.3 96 162-288 116-211 (284)
47 PRK13936 phosphoheptose isomer 96.8 0.019 4.1E-07 57.0 12.5 122 163-309 32-169 (197)
48 PRK10892 D-arabinose 5-phospha 96.7 0.018 4E-07 61.0 12.5 101 163-293 35-137 (326)
49 PTZ00394 glucosamine-fructose- 96.6 0.0061 1.3E-07 71.2 8.7 91 184-295 354-446 (670)
50 cd05007 SIS_Etherase N-acetylm 96.4 0.04 8.6E-07 57.0 12.1 44 241-294 117-162 (257)
51 PRK14101 bifunctional glucokin 96.2 0.038 8.2E-07 64.3 11.9 101 162-293 456-557 (638)
52 PRK12570 N-acetylmuramic acid- 96.2 0.066 1.4E-06 56.6 12.7 39 241-289 126-164 (296)
53 TIGR00393 kpsF KpsF/GutQ famil 96.1 0.029 6.3E-07 57.5 9.4 87 186-293 2-90 (268)
54 PRK05441 murQ N-acetylmuramic 95.9 0.093 2E-06 55.6 12.2 40 239-289 129-168 (299)
55 cd05009 SIS_GlmS_GlmD_2 SIS (S 95.8 0.037 8E-07 51.4 8.2 111 163-308 2-114 (153)
56 TIGR00274 N-acetylmuramic acid 95.4 0.14 3.1E-06 54.0 11.6 44 241-294 125-170 (291)
57 PRK02947 hypothetical protein; 95.0 0.18 3.9E-06 51.9 10.5 39 241-289 105-143 (246)
58 COG0449 GlmS Glucosamine 6-pho 94.4 0.12 2.7E-06 59.1 8.2 92 182-294 281-374 (597)
59 PF13580 SIS_2: SIS domain; PD 92.4 0.96 2.1E-05 42.1 9.4 99 165-287 26-138 (138)
60 COG0279 GmhA Phosphoheptose is 87.5 12 0.00026 36.6 12.4 100 166-288 33-145 (176)
61 PTZ00295 glucosamine-fructose- 78.9 13 0.00028 43.6 10.7 113 163-307 485-599 (640)
62 COG1660 Predicted P-loop-conta 73.0 55 0.0012 34.4 12.1 131 185-349 2-138 (286)
63 KOG1268 Glucosamine 6-phosphat 66.4 14 0.00029 42.1 6.5 139 184-349 355-508 (670)
64 PRK02261 methylaspartate mutas 60.0 1.4E+02 0.0031 27.9 11.3 100 186-304 5-118 (137)
65 PF02698 DUF218: DUF218 domain 58.9 43 0.00093 31.2 7.7 61 230-298 57-123 (155)
66 COG1434 Uncharacterized conser 58.8 68 0.0015 31.7 9.6 57 234-298 113-175 (223)
67 PRK13018 cell division protein 54.9 1.3E+02 0.0029 33.1 11.7 94 186-298 30-144 (378)
68 TIGR03339 phn_lysR aminoethylp 54.3 52 0.0011 33.0 8.0 78 146-236 53-130 (279)
69 PF03668 ATP_bind_2: P-loop AT 54.3 78 0.0017 33.5 9.3 95 185-298 2-102 (284)
70 PF01339 CheB_methylest: CheB 52.1 4.9 0.00011 39.5 0.1 61 189-253 1-61 (182)
71 PRK09330 cell division protein 50.0 1.4E+02 0.0031 33.0 10.9 104 185-306 14-137 (384)
72 PRK10494 hypothetical protein; 49.8 78 0.0017 32.9 8.6 65 230-308 140-210 (259)
73 TIGR00065 ftsZ cell division p 49.7 1.2E+02 0.0027 32.9 10.3 73 186-273 19-99 (349)
74 COG0206 FtsZ Cell division GTP 49.4 2.3E+02 0.005 30.8 12.2 96 185-298 12-127 (338)
75 TIGR02370 pyl_corrinoid methyl 48.6 2.8E+02 0.0061 27.4 14.7 97 186-298 86-188 (197)
76 cd06259 YdcF-like YdcF-like. Y 45.4 78 0.0017 29.2 7.1 59 231-297 55-119 (150)
77 PF05673 DUF815: Protein of un 44.3 3.4E+02 0.0073 28.3 11.9 164 157-339 32-202 (249)
78 COG2185 Sbm Methylmalonyl-CoA 43.6 3E+02 0.0064 26.4 10.5 99 181-298 10-117 (143)
79 cd02201 FtsZ_type1 FtsZ is a G 42.4 45 0.00098 35.3 5.5 39 186-234 2-41 (304)
80 PRK03601 transcriptional regul 41.6 1.3E+02 0.0028 30.6 8.7 125 96-237 2-136 (275)
81 cd02067 B12-binding B12 bindin 41.6 1.7E+02 0.0036 26.0 8.4 86 195-298 12-104 (119)
82 PF02887 PK_C: Pyruvate kinase 41.0 27 0.00058 31.4 3.1 41 244-298 18-58 (117)
83 PF05377 FlaC_arch: Flagella a 38.2 31 0.00068 27.6 2.6 20 520-545 35-54 (55)
84 PLN02331 phosphoribosylglycina 36.6 67 0.0014 32.4 5.4 51 245-307 2-57 (207)
85 PLN02828 formyltetrahydrofolat 36.3 67 0.0015 33.7 5.6 53 242-307 70-131 (268)
86 PF02056 Glyco_hydro_4: Family 35.9 36 0.00079 33.7 3.3 32 331-362 119-152 (183)
87 PRK12550 shikimate 5-dehydroge 35.4 87 0.0019 32.8 6.2 41 185-237 123-164 (272)
88 TIGR01501 MthylAspMutase methy 35.2 3.9E+02 0.0084 25.1 11.2 90 196-304 15-116 (134)
89 CHL00180 rbcR LysR transcripti 35.2 2.4E+02 0.0052 29.0 9.6 94 94-195 4-104 (305)
90 cd02191 FtsZ FtsZ is a GTPase 34.3 89 0.0019 33.3 6.2 103 186-307 2-125 (303)
91 PF13460 NAD_binding_10: NADH( 34.0 3.2E+02 0.0069 25.5 9.5 90 187-288 1-99 (183)
92 PF14606 Lipase_GDSL_3: GDSL-l 33.8 91 0.002 30.8 5.7 57 185-249 34-100 (178)
93 PRK05442 malate dehydrogenase; 33.2 3E+02 0.0064 29.6 10.0 19 185-203 5-26 (326)
94 TIGR00655 PurU formyltetrahydr 32.8 1.1E+02 0.0025 32.1 6.6 94 184-306 42-139 (280)
95 PF01041 DegT_DnrJ_EryC1: DegT 31.8 25 0.00053 37.9 1.6 48 217-271 85-138 (363)
96 cd02202 FtsZ_type2 FtsZ is a G 31.0 1E+02 0.0022 33.5 6.1 48 186-237 2-49 (349)
97 COG0569 TrkA K+ transport syst 30.7 3E+02 0.0066 27.8 9.1 85 186-298 2-94 (225)
98 TIGR00322 diphth2_R diphthamid 29.7 6.7E+02 0.014 27.1 12.0 104 174-288 159-272 (332)
99 PRK11074 putative DNA-binding 29.0 3.8E+02 0.0083 27.4 9.9 116 95-225 2-127 (300)
100 PRK13010 purU formyltetrahydro 28.4 98 0.0021 32.8 5.3 52 243-306 94-148 (289)
101 cd06191 FNR_iron_sulfur_bindin 28.3 2.2E+02 0.0047 28.2 7.6 107 185-303 103-227 (231)
102 PRK10837 putative DNA-binding 28.3 1.7E+02 0.0037 29.6 7.0 127 94-236 2-135 (290)
103 PRK10094 DNA-binding transcrip 28.2 2.8E+02 0.0061 28.8 8.7 126 95-235 2-138 (308)
104 PRK11194 ribosomal RNA large s 28.1 3.8E+02 0.0082 29.5 9.9 49 158-208 134-182 (372)
105 PRK10537 voltage-gated potassi 28.0 4.2E+02 0.0091 29.3 10.3 31 280-313 330-363 (393)
106 PRK00994 F420-dependent methyl 28.0 5E+02 0.011 27.1 9.9 122 198-340 14-147 (277)
107 PRK11151 DNA-binding transcrip 27.5 4.1E+02 0.0089 27.2 9.8 125 97-236 3-137 (305)
108 PF06792 UPF0261: Uncharacteri 27.1 1.6E+02 0.0036 32.7 6.8 26 377-402 309-334 (403)
109 PF02826 2-Hacid_dh_C: D-isome 26.4 2.3E+02 0.0049 27.3 7.1 59 159-228 6-69 (178)
110 PF04816 DUF633: Family of unk 26.1 1.8E+02 0.0039 29.2 6.5 67 184-257 67-145 (205)
111 COG0169 AroE Shikimate 5-dehyd 26.1 1.8E+02 0.004 30.7 6.8 39 185-235 127-166 (283)
112 PF10432 bact-PGI_C: Bacterial 26.1 1.9E+02 0.0041 27.6 6.4 52 505-556 101-153 (155)
113 PF02254 TrkA_N: TrkA-N domain 25.9 4.3E+02 0.0094 22.8 9.4 68 218-298 41-111 (116)
114 PRK08351 DNA-directed RNA poly 25.2 59 0.0013 26.6 2.3 24 282-315 33-58 (61)
115 COG2236 Predicted phosphoribos 25.2 4E+02 0.0086 26.7 8.6 41 161-208 13-53 (192)
116 PRK06027 purU formyltetrahydro 24.9 1.4E+02 0.003 31.6 5.6 52 243-307 90-145 (286)
117 PRK12749 quinate/shikimate deh 24.8 2.1E+02 0.0046 30.1 7.0 44 185-239 125-171 (288)
118 PRK15092 DNA-binding transcrip 24.5 5.4E+02 0.012 26.8 10.1 125 95-236 11-145 (310)
119 COG2103 Predicted sugar phosph 24.3 7.3E+02 0.016 26.4 10.5 121 154-298 36-177 (298)
120 PF00056 Ldh_1_N: lactate/mala 24.3 2.6E+02 0.0056 26.1 6.8 52 251-303 82-140 (141)
121 cd01485 E1-1_like Ubiquitin ac 24.1 2.7E+02 0.0058 27.5 7.2 20 185-206 20-39 (198)
122 cd06211 phenol_2-monooxygenase 23.9 1.9E+02 0.004 28.9 6.2 15 185-200 110-124 (238)
123 PRK09426 methylmalonyl-CoA mut 23.8 8.9E+02 0.019 29.1 12.6 100 180-298 579-687 (714)
124 PRK11139 DNA-binding transcrip 23.4 3.4E+02 0.0074 27.7 8.2 117 94-224 5-128 (297)
125 cd05292 LDH_2 A subgroup of L- 22.9 2.3E+02 0.005 30.0 6.9 15 187-203 3-17 (308)
126 cd02071 MM_CoA_mut_B12_BD meth 22.9 5.6E+02 0.012 23.0 11.1 87 195-298 12-104 (122)
127 COG0820 Predicted Fe-S-cluster 22.2 1.4E+02 0.003 32.6 5.1 44 159-207 133-176 (349)
128 cd06213 oxygenase_e_transfer_s 22.2 3.7E+02 0.0081 26.4 8.0 15 185-200 101-115 (227)
129 PRK07535 methyltetrahydrofolat 22.2 7E+02 0.015 25.9 10.2 96 121-255 4-102 (261)
130 PRK11199 tyrA bifunctional cho 22.2 3E+02 0.0066 30.0 7.8 72 157-239 71-143 (374)
131 PRK09791 putative DNA-binding 21.9 7.6E+02 0.016 25.2 10.5 130 94-236 4-140 (302)
132 COG0111 SerA Phosphoglycerate 21.0 2.8E+02 0.006 29.9 7.1 83 159-258 113-211 (324)
133 PF13419 HAD_2: Haloacid dehal 20.3 3E+02 0.0065 24.8 6.4 88 197-298 80-172 (176)
134 PTZ00394 glucosamine-fructose- 20.2 3.9E+02 0.0085 31.7 8.7 101 184-307 526-628 (670)
135 PRK11382 frlB fructoselysine-6 20.2 9E+02 0.019 25.9 10.9 85 184-287 208-293 (340)
136 TIGR02424 TF_pcaQ pca operon t 20.2 8.3E+02 0.018 24.7 10.3 125 94-234 2-136 (300)
No 1
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-155 Score=1203.13 Aligned_cols=534 Identities=53% Similarity=0.868 Sum_probs=508.5
Q ss_pred CCCCCCHHHHHHHHHHHHh-hcccHHhhc-CChhhhhhhhcccCC-----eEEecccCcCCHHHHHHHHHHHHHcChHHH
Q 007374 43 TLICDTEPWKDLKNHVQEI-KKTHLRDLM-SDTDRCQSMMVEFDG-----ILLDYSRQNATLKTMDKLYQLAEAAQLNNK 115 (606)
Q Consensus 43 ~~~~~~~~w~~L~~~a~~~-~~~~l~~lf-~d~~R~~~~~~~~~g-----l~lD~Sk~~i~~~~l~~l~~la~~~~l~~~ 115 (606)
+.++++|+|++|++|+++. ++.+++++| +|++|++++++.+.+ |++|||||++|+++++.|+.||+.+++.++
T Consensus 2 ~~~t~~p~~~~lq~~~e~~~k~~~lk~lf~kD~~r~~k~~~~~~~~~~~~il~D~Skn~~tdE~v~~l~~laK~~~v~~~ 81 (546)
T KOG2446|consen 2 SLLTNLPAWQKLQRHVESDGKHLDLKDLFEKDPDRFEKFSLTFFTQKDGGILLDYSKNRITDEIVDLLLMLAKFRAVEEA 81 (546)
T ss_pred CcccccHHHHHHHHHHHHhhcchhHHHHHhhCHHHHHhhhhhhccCCCCcEEEEeccccccHHHHHHHHHHHHHhhHHHH
Confidence 3678999999999999885 558999999 799999999987755 999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccC
Q 007374 116 INRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGS 195 (606)
Q Consensus 116 ~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS 195 (606)
|++||+||+||.||||+|||+|||++.+.++.+||++++|+|+.+++.|++|+++||+|.|+|+|||+|++||+||||||
T Consensus 82 ~d~mf~Ge~iN~tE~RaVlHvaLRn~~~~pi~~dg~~v~peV~~vL~~ikeFsd~i~SG~w~g~tgk~itdVvnIGIGGS 161 (546)
T KOG2446|consen 82 RDAMFKGEHINFTENRAVLHVALRNRANRPILVDGKDVMPEVENVLDHIKEFSDDIRSGSWKGYTGKKITDVVNIGIGGS 161 (546)
T ss_pred HHHHhcCcccCCCCCceeeeHHhhCcccCceecCCcccchhHHHHHHHHHHHHHHhhcCCCCCCCCCeeeeEEEeccccc
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhc-C
Q 007374 196 FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTAL-G 274 (606)
Q Consensus 196 ~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~-g 274 (606)
+|||.|+++||+++. ..++++||++|+||.+++++++.||||+|||||+||||||.||+.|++.+++|++.+. +
T Consensus 162 dLGP~mVteALk~y~-----~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ETitnaetak~w~~a~~~d 236 (546)
T KOG2446|consen 162 DLGPLMVTEALKPYG-----PGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTAETITNAETAKEWFLAKAKD 236 (546)
T ss_pred ccchHHHHHhhccCC-----CCCceEEEEecCCchhHHHHHhccCccceEEEEEecCcCcHHHHhhHHHHHHHHHhhcCC
Confidence 999999999999985 2468999999999999999999999999999999999999999999999999998873 2
Q ss_pred CcccCCeEEEEcCCchHHHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCC
Q 007374 275 PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEK 354 (606)
Q Consensus 275 ~~~~~~h~vaVT~~~~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala~G~d~~~~lL~GA~~md~~f~~~~~~~ 354 (606)
...+++||||+++|.....+|||+++|+|+||||||||||+||||| ||+||.+|+|+|++||.||+.||+||+++|+++
T Consensus 237 ~s~VAkhfvAlstN~~~v~~fgid~~nmF~fwDWVGGRySlwSAvG-LsiaL~iGf~Nfe~~L~GA~~mDehf~tTp~ek 315 (546)
T KOG2446|consen 237 PSAVAKHFVALSTNTAEVEKFGIDPKNMFEFWDWVGGRYSLWSAVG-LSIALYIGFDNFEKLLKGAHAMDEHFRTTPLEK 315 (546)
T ss_pred hHHHHHHHHHHhccHHHHHHhCCCcccccchhhhccCeeehhhhcC-cceeeehhHHHHHHHhhhhHHHHHHhhcCCccc
Confidence 3456799999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcCCCcccccccccccCCCCCCCCccccee
Q 007374 355 NIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQL 434 (606)
Q Consensus 355 N~p~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Ql 434 (606)
|+|+++|++.+||.++.|+++++++||+++|++|++|+||+.||||||.++++|.+++|.||+++||++|||+|||||||
T Consensus 316 N~p~llal~~vwysn~~G~~t~~vlPYdqyl~rF~~YlQQ~~MESnGK~vt~~g~~v~~~tG~ivwGepGTn~QHaf~Ql 395 (546)
T KOG2446|consen 316 NIPVLLALLSVWYSNFFGAETHAVLPYDQYLHRFAAYLQQLSMESNGKEVTRDGNPVNYSTGLIVWGEPGTNGQHAFYQL 395 (546)
T ss_pred CHHHHHHHHHHHHhccCCCCceEEeehHHHHHHHHHHHHHhhhhhcCceeecCCccccccccceeecCCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEe
Q 007374 435 IHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLL 513 (606)
Q Consensus 435 l~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~ 513 (606)
+||| +.+|||||.+.++++|.+. ..+|+++++||+||.++||.|||.+++.+|+... +.||++|.||||+++|.
T Consensus 396 ihqGtr~ip~dFi~p~ks~~Pi~~----~~hh~~llsNf~aq~ealm~Gkt~~~~~~Eg~~~-l~phk~f~gnRpt~Si~ 470 (546)
T KOG2446|consen 396 IHQGTRLIPADFIEPLKSHNPIHD----GLHHKMLLSNFLAQTEALMVGKTPEEAKKEGTAS-LLPHKVFSGNRPTISIV 470 (546)
T ss_pred HhhccccccHHHhhhhhccCCccc----chhHHHHHhhhhcchHHHHcCCCHHHHHhccccc-ccchhhhcCCCCceeEE
Confidence 9999 7899999999998887632 2588999999999999999999999999998776 88999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHHHHHHHHHhhhcccCCCCCCCCChhHHHHHHHHHHh
Q 007374 514 LPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYLEA 591 (606)
Q Consensus 514 l~~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~~~~~~d~st~~li~~~~~~ 591 (606)
+++++|++||+|||+|||+++++|.+||||+|||||||+||++|++|+++|+.. .+...||+||..+|..+..+
T Consensus 471 ~~kvTP~tlGAlIA~YEh~ifv~g~iw~INSfdQwGVElGKklAk~V~~~l~~~----~~v~~~d~stn~li~~lk~~ 544 (546)
T KOG2446|consen 471 LQKVTPFTLGALIALYEHKIFVQGIIWNINSFDQWGVELGKKLAKEVLAELDSS----GTVLTHDASTNGLINLLKEI 544 (546)
T ss_pred eeccChHHHHHHHHHHHHHHhhheeEeccccccchhhHHHHHHHHHHHHHHhcc----ccccccccccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999863 24456999999999988765
No 2
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=4.9e-152 Score=1254.54 Aligned_cols=547 Identities=60% Similarity=0.974 Sum_probs=508.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcccHHhhcCChhhhhhhhcccCCeEEecccCcCCHHHHHHHHHHHHHcChHHHHHHHhcCC
Q 007374 44 LICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGE 123 (606)
Q Consensus 44 ~~~~~~~w~~L~~~a~~~~~~~l~~lf~d~~R~~~~~~~~~gl~lD~Sk~~i~~~~l~~l~~la~~~~l~~~~~~m~~G~ 123 (606)
+++++++|++|++|+++++..+|+++|.||+|+++|+++++||++|||||+||++++++|+++|++++|+++|++||+|+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~l~~~f~~~~R~~~~~~~~~~l~lD~sk~~v~~~~~~~l~~la~~~~l~~~~~~m~~G~ 81 (552)
T PTZ00430 2 DLESLKSYKNLLSLAEKLKKVHLRDLLKDEERNKSLIKEFKGVTLDLSRQRLDEETLKLLIELAEEAKLKEKIKDMFNGE 81 (552)
T ss_pred CCcccHHHHHHHHHHHHhccCCHHHHhcCcchHHhheeeeCCEEEEccCCCCCHHHHHHHHHHHHhCChHHHHHHHHCCC
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHH
Q 007374 124 KINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVH 203 (606)
Q Consensus 124 ~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~ 203 (606)
+||.||+|+|||||||+|.+.++.++|+++.+++++++++|++|+++||+|+|+|+|||+|++||+||||||+|||+|++
T Consensus 82 ~iN~tE~R~vlH~alR~~~~~~~~~~g~~~~~~v~~~l~~~~~f~~~v~~g~~~g~tg~~~~~VV~IGIGGS~LGp~~v~ 161 (552)
T PTZ00430 82 KINTTENRAVLHTALRAPRGEKVVVDGKNVLEDVHEVLDRIKKFSDKIRSGEILGSTGKKLKNVICIGIGGSYLGTEFVY 161 (552)
T ss_pred cCCCCCCcccccHhhcCCcCCCcccCCchhHHHHHHHHHHHHHHHHHHHcCCccCCCCCeeceEEEEcCCccchHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCC-cccCCeE
Q 007374 204 TALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGP-SAVAKHM 282 (606)
Q Consensus 204 ~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~-~~~~~h~ 282 (606)
+||.++........++++||++|+||.++.++++.+||++|||||+||||||.||++|++.+|+||.++++. ....+||
T Consensus 162 ~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ldp~~TLfiViSKSgtT~ETl~n~~~~r~wl~~~~~~~~~~~~h~ 241 (552)
T PTZ00430 162 EALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLDPEETLVVIISKTFTTAETMLNAKTVRQWLLDNIKSKEALSKHL 241 (552)
T ss_pred HHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccCeE
Confidence 999875321001124789999999999999999999999999999999999999999999999999876553 3467899
Q ss_pred EEEcCCchHHHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 007374 283 VAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGL 362 (606)
Q Consensus 283 vaVT~~~~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAl 362 (606)
||||++.+.|+++||+++|+|+||||||||||+||+|||||+|+++|+|+|++||+||++||+||+++|+++|+|++||+
T Consensus 242 vavT~~~~~a~~~gi~~~~~f~~~d~VGGRySv~SaVGLlP~al~~G~d~~~~lL~GA~~md~hf~~~~~~~N~pvllal 321 (552)
T PTZ00430 242 CAVSTNLKLTSEFGIPDENVFGFWDWVGGRFSVTSAVGILPLSIQFGYDIVQQFLNGCHDMDEHFRTAPLEENLPVLLGL 321 (552)
T ss_pred EEEcCchHHHHHcCCchhcEecCcCCcCCcceeeccchhHHHHHHcChHHHHHHHHHHHHHHHHHhcCChhhCHHHHHHH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeeccccc
Q 007374 363 LSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIP 442 (606)
Q Consensus 363 l~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~ 442 (606)
+.+||.+++|+++++++||+++|++||+|+|||+||||||+++++|++++++|||++||++||+|||||+||+|||+.+|
T Consensus 322 l~~~~~~~~g~~~~~vlpY~~~L~~f~~wlqQL~mES~GK~v~~~G~~v~~~tG~~~~G~~Gt~dQHSf~QllhqG~~~~ 401 (552)
T PTZ00430 322 TSFYNSTFLGYNCVAILPYCQALLKFPAHVQQLLMESNGKSVTLDGNTLDYNTGEIYFGEPGTNGQHSFYQLLHQGRVVP 401 (552)
T ss_pred HHHHHHhcCCCCeEEEEecHHHHHHHHHHHHHHHHHhcCCccccCCCCcccCccceeeCCCCCCcchhHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996689
Q ss_pred eeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEeCCCCChhhH
Q 007374 443 CDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNI 522 (606)
Q Consensus 443 ~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~~~~L 522 (606)
+|||.+.++.++..++.+...+|+.+++||++|+++|++||+.+++.+++..+++.+|++++|||||++|+++++||++|
T Consensus 402 ~~FI~~~~~~~~~~i~~~~~~~~~~llan~laq~~aL~~Gk~~~~~~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~p~~l 481 (552)
T PTZ00430 402 SEFIGFAKSQNPIKLLGEPVSNHDELMSNFFAQPDALAFGKTYEELEKEGVPEELIPHKVFPGNRPSLLLLFPELNPYTI 481 (552)
T ss_pred eEEEEEeccCCCcCcCccccccHHHHHhhhHHHHHHHHcCCCHHHHHhccchhhhhhcccCCCCCceEEEEeCCCCHHHH
Confidence 99999988755544544333679999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHHHHHHHHHhhhcccCCC---CCCCCChhHHHHHHHHHH
Q 007374 523 GQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKRE---PIEGFNFSTTTLLTRYLE 590 (606)
Q Consensus 523 G~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~---~~~~~d~st~~li~~~~~ 590 (606)
|+|||+|||+|+++|++||||||||||||+||++|++|+..+.+...... ....+|+||++||+++++
T Consensus 482 G~LialyEh~v~v~G~lwgINpFDQpGVElGK~la~~i~~~~~~~~~~~~~~~~~~~~d~st~~li~~~~~ 552 (552)
T PTZ00430 482 GQLLALYEHRTVVEGFLWNINSFDQWGVELGKVLAKDVRNLFKDNRSNSSPHAKESKFNGSTKRLLSYYLQ 552 (552)
T ss_pred HHHHHHHHHHHHHhhhccCcCCCCCccHHHHHHHHHHHHHHHhcccccccccccccCCChHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999975321000 034599999999999863
No 3
>PLN02649 glucose-6-phosphate isomerase
Probab=100.00 E-value=5.4e-150 Score=1241.57 Aligned_cols=551 Identities=74% Similarity=1.173 Sum_probs=512.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcccHHhhcCChhhhhhhhcccCCeEEecccCcCCHHHHHHHHHHHHHcChHHHHHHHhcCC
Q 007374 44 LICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGE 123 (606)
Q Consensus 44 ~~~~~~~w~~L~~~a~~~~~~~l~~lf~d~~R~~~~~~~~~gl~lD~Sk~~i~~~~l~~l~~la~~~~l~~~~~~m~~G~ 123 (606)
.++.+++|++|++|++..+..+++++|+|++|+++|+++++||++|||||+||++++++|++||++++|.++|++||+|+
T Consensus 7 ~~~~~~~w~~l~~~~~~~~~~~l~~lf~~~~R~~~~~~~~~~l~~D~sk~~v~~~~l~~l~~la~~~~l~~~~~~m~~G~ 86 (560)
T PLN02649 7 LISDTPAWKRLVAHVYQIKKTHLRELLNDAERCQSMIAEFDGIYLDYSRQRVTDETMELLFPLAEAANLFEKIEAMFSGE 86 (560)
T ss_pred CCcccHHHHHHHHHHHHhccCCHHHHhcCccchhhceeeeCCEEEEccCCcCCHHHHHHHHHHHHhCChHHHHHHHhCCC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHH
Q 007374 124 KINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVH 203 (606)
Q Consensus 124 ~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~ 203 (606)
+||.||+|+|||||||+|.+.++.++|+++.++|++++++|++|+++||+|+|+|+||++|++||+||||||+|||+|++
T Consensus 87 ~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~v~~~l~r~~~f~~~vr~g~~~g~tg~~~~~VV~IGIGGS~LGp~~v~ 166 (560)
T PLN02649 87 IINSTEDRAVLHVALRAPRLAPILVDGKNVVPEVWEVLDKIKAFSEDVRSGKWKGATGKRFTNVVSIGIGGSFLGPLFVH 166 (560)
T ss_pred CCCCCCCcchhhHHhhCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHHcCCcccCCCCccceEEEEecCcchHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEE
Q 007374 204 TALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMV 283 (606)
Q Consensus 204 ~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~v 283 (606)
+||.++........++++||+||+||.++.++++.+||++|||||+||||+|.||++|++.+++||++++|...+.+|||
T Consensus 167 ~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~p~~TL~iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~v 246 (560)
T PLN02649 167 EALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLDPETTLVVVVSKTFTTAETMLNARTVRKWLRDALGGLAVAKHMV 246 (560)
T ss_pred HHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccccceEE
Confidence 99997642111123468999999999999999999999999999999999999999999999999987765444679999
Q ss_pred EEcCCchHHHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 007374 284 AVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLL 363 (606)
Q Consensus 284 aVT~~~~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll 363 (606)
|||++.++++.+|++..++|+||||||||||+||+|||||+|+++|+|+|++||+||++||+||+++|+++|+|++||++
T Consensus 247 avT~~~~l~~~a~~~~~~~F~~~d~VGGRfSv~SavGLlP~ala~G~d~~~~lL~GA~~md~hf~~~~~~~N~p~llAll 326 (560)
T PLN02649 247 AVSTNLLLVNKFGIDPWNAFPFWDWVGGRYSVCSAVGLLPLSLQYGFDVVEEFLEGAASMDEHFRTAPLKENIPVLLGLL 326 (560)
T ss_pred EECCChHHHHHhCcCCccEEeCCCCCCCceeecchhhHHHHHHHhCHHHHHHHHHHHHHHHHHHhcCChhhCHHHHHHHH
Confidence 99999999999999988999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeeccccce
Q 007374 364 SIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPC 443 (606)
Q Consensus 364 ~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~~ 443 (606)
.+|+.+++|+++++++||+++|++||+|+|||+||||||+++++|++++++|||++||++||+|||||+||+|||+.+|+
T Consensus 327 ~~~~~~~~g~~~~vilpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~tG~~~~g~~Gt~dQHSf~QllhqG~~~~~ 406 (560)
T PLN02649 327 SVWNSSFLGYPARAILPYSQALLKFAPHIQQLDMESNGKGVDLDGNPLPVNTGEIDFGEPGTNGQHSFYQLIHQGRNIPC 406 (560)
T ss_pred HHHHHhcCCCCeEEEeccchhHHHHHHHHHHHHHHhcCCccccCCCCcccCccceEecCCCCCchHHHHHHHHcCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977899
Q ss_pred eEEEeeccCCccccc-cccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEeCCCCChhhH
Q 007374 444 DFIGVVKSQQPVYLK-GEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNI 522 (606)
Q Consensus 444 dfi~~~~~~~~~~~~-~~~~~~~~~l~~n~~aq~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~~~~L 522 (606)
|||.+.++.++..++ .+..++|+.|++||+||.++|++||+.+++++++.++++++|++++|||||++|.++++||++|
T Consensus 407 ~FI~~~~~~~~~~i~~~~~~~~~~~L~an~~aq~~aL~~Gk~~~~~~~~~~~~~l~~~~~~~gnrPs~~i~l~~l~p~~l 486 (560)
T PLN02649 407 DFIGVVRSQQPVHLWLGEGVSNHDELMSNFFAQPDALAYGKTPEQLRAEGVPEELIPHKVFAGNRPSLSILLPELTAYTV 486 (560)
T ss_pred EEEEECCcCCccccccccccchHHHHHHHHHhhHHHHHcCCCHHHHHhhcchhhhhhcccCCCCCceEEEEeCCCCHHHH
Confidence 999988775554343 2223689999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHHHHHHHHHhhhcccCCCCCCCCChhHHHHHHHHHHhCCC
Q 007374 523 GQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYLEASSD 594 (606)
Q Consensus 523 G~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~~~~~~d~st~~li~~~~~~~~~ 594 (606)
|+|||||||+|+++|++||||||||||||+||++|++|+..+.+.+..+....+||+||++||++++.+...
T Consensus 487 G~LialyEh~v~v~G~lw~IN~FDQpGVElGK~la~~i~~~l~~~~~~~~~~~~~d~sT~~li~~~~~~~~~ 558 (560)
T PLN02649 487 GQLLALYEHRVAVQGFIWNINSFDQWGVELGKALAKRVRAVLNEARTKGEPVEGFNSSTTALLNHYLANKRA 558 (560)
T ss_pred HHHHHHHHHHHHHhhhccCcCCCCchhHHHHHHHHHHHHHHhhcccccCCCCCCCCHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999753211123456999999999999987654
No 4
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=100.00 E-value=1.8e-146 Score=1212.32 Aligned_cols=534 Identities=49% Similarity=0.844 Sum_probs=500.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcccHHhhc-CChhhhhhhhcccCCeEEecccCcCCHHHHHHHHHHHHHcChHHHHHHHhc
Q 007374 43 TLICDTEPWKDLKNHVQEIKKTHLRDLM-SDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYN 121 (606)
Q Consensus 43 ~~~~~~~~w~~L~~~a~~~~~~~l~~lf-~d~~R~~~~~~~~~gl~lD~Sk~~i~~~~l~~l~~la~~~~l~~~~~~m~~ 121 (606)
+.++.+++|++|++|+.++++.+|+++| +|++|+++|+++++||++|||||+||++++++|+++|++++|+++|++||+
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~l~~lf~~~~~R~~~~~~~~~~~~lD~sk~~i~~~~~~~l~~la~~~~l~~~~~~~~~ 82 (548)
T PRK00179 3 INLTQTPAWQALQAHADEIKDVHLRDLFAADPDRFERFSLTAGGLLLDYSKNRITDETLALLLDLAREAGLEGARDAMFA 82 (548)
T ss_pred CCccchHHHHHHHHHHHhcccCCHHHHhccCchHHHhceeecCCEEEEccCCCCCHHHHHHHHHHHHhCChHHHHHHHhC
Confidence 4567889999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHH
Q 007374 122 GEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLF 201 (606)
Q Consensus 122 G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~ 201 (606)
|++||.||+|+|||||||+|.+.++.++|+++.+++++++++|++|+++||+|+|+|+|||+|++||+||||||+|||+|
T Consensus 83 G~~iN~tE~R~vlH~alR~~~~~~~~~~~~~~~~~v~~~l~~~~~f~~~i~~g~~~g~~g~~~~~vV~IGIGGS~LGp~~ 162 (548)
T PRK00179 83 GEKINTTEDRAVLHTALRNPSNTPILVDGQDVMPEVHAVLARMKAFAEAVRSGEWKGYTGKAITDVVNIGIGGSDLGPVM 162 (548)
T ss_pred CCCCCCCCCcchhhHHhhCCcCCccccCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCccCeEEEECCCcchHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCc-ccCC
Q 007374 202 VHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPS-AVAK 280 (606)
Q Consensus 202 ~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~-~~~~ 280 (606)
+++||.++. ..++++||++|+||.++.++++.+||++|||||+||||+|.||++|++.+++||.++++++ ...+
T Consensus 163 ~~~al~~~~-----~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL~iViSKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~ 237 (548)
T PRK00179 163 VTEALRPYA-----DPGLRVHFVSNVDGAHLAETLKKLDPETTLFIVASKTFTTQETLTNAHSARDWFLAAGGDEAAVAK 237 (548)
T ss_pred HHHHhhhhc-----cCCCceEEEeCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccccc
Confidence 999998742 1346899999999999999999999999999999999999999999999999998776543 4688
Q ss_pred eEEEEcCCchHHHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHH
Q 007374 281 HMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLL 360 (606)
Q Consensus 281 h~vaVT~~~~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~l 360 (606)
||||||++.+.++++||+++|+|+||||||||||+||+|||+|++++ |+|+|++||+||++||+||+++|+.+|+|++|
T Consensus 238 h~vaVT~~~~~~~~~g~~~~~~F~~~d~VGGRfSvlSavGL~pa~~~-G~d~~~~lL~GA~~md~~f~~~~~~~N~p~ll 316 (548)
T PRK00179 238 HFVAVSTNAEAVAEFGIDPDNMFGFWDWVGGRYSLWSAIGLSIALAI-GPDNFEELLAGAHAMDEHFRTAPLEKNLPVLL 316 (548)
T ss_pred eEEEEcCCcHHHHHcCCchhcEEECCCCCCCcceecchhhHHHHHHh-CcHHHHHHHHHHHHHHHHHhcCChhhCHHHHH
Confidence 99999999999999999989999999999999999999998887775 99988999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-c
Q 007374 361 GLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-R 439 (606)
Q Consensus 361 All~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~ 439 (606)
|++.+||.+++|+++++++||+++|++||+|+|||+||||||+++++|++++++|+|++||++||+|||||+||+||| +
T Consensus 317 all~~~~~~~~g~~~~vllpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~t~piv~g~~Gt~dQHSf~QllhqG~~ 396 (548)
T PRK00179 317 ALIGVWYRNFFGAQSHAVLPYDQYLHRFPAYLQQLEMESNGKSVDRDGTPVDYQTGPIIWGEPGTNGQHAFFQLLHQGTK 396 (548)
T ss_pred HHHHHHHHhcCCCCeEEEecchHHHHHHHHHHHHHhhhhcCCccccCCCccccCccceeecCCCCchhHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred ccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhc--------ccCCCCCCCccCCCCcceeE
Q 007374 440 VIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKE--------NVAPHLIPHKTFSGNRPSLS 511 (606)
Q Consensus 440 ~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~~l~~~--------~~~~~l~~~~~~~gnrPs~~ 511 (606)
.+|+|||.+.+++++. ..+|+.+++||++|.++|+.|++.++++++ +..+++++|++++|||||++
T Consensus 397 ~~~~~FI~~~~~~~~~------~~~~~~l~~n~~aq~~al~~Gk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gnrPs~~ 470 (548)
T PRK00179 397 LVPADFIAPAQPHNPL------GDHHDLLLANCFAQTEALMFGKTAEEVRAELRAKGLDEAEAEELAPHKVFPGNRPSTT 470 (548)
T ss_pred CeeeEEEEEcCCCCcc------chhhHhhcCCccccHHHHhcCCCHHHHHHHHhhcccchhHHHHhhhcccCCCCCceEE
Confidence 8899999988765543 246899999999999999999999998764 33456789999999999999
Q ss_pred EeCCCCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHHHHHHHHHhhhcccCCCCCCCCChhHHHHHHHHHHh
Q 007374 512 LLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYLEA 591 (606)
Q Consensus 512 I~l~~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~~~~~~d~st~~li~~~~~~ 591 (606)
|.++++||++||+|||+|||+|+++|+|||||||||||||+||++|++|+..+.+. ....++|+||++||++++.+
T Consensus 471 i~l~~l~p~~lG~LialyEh~~~v~g~l~gIN~FDQpGVElGK~la~~il~~~~~~----~~~~~~d~sT~~li~~~~~~ 546 (548)
T PRK00179 471 ILLDRLTPFTLGALIALYEHKVFVQGVIWGINSFDQWGVELGKQLAKRILPELEGD----SEASAHDSSTNGLINRYRAW 546 (548)
T ss_pred EEecCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCchhHHHHHHHHHHHHHHhcCC----CCCCCCChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998652 22336999999999999875
Q ss_pred C
Q 007374 592 S 592 (606)
Q Consensus 592 ~ 592 (606)
+
T Consensus 547 ~ 547 (548)
T PRK00179 547 R 547 (548)
T ss_pred c
Confidence 4
No 5
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1.3e-145 Score=1197.79 Aligned_cols=518 Identities=38% Similarity=0.617 Sum_probs=483.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcccHHhhcCChhhhhhhhcccCCeEEecccCcCCHHHHHHHHHHHHHcChHHHHHHHhcCC
Q 007374 44 LICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGE 123 (606)
Q Consensus 44 ~~~~~~~w~~L~~~a~~~~~~~l~~lf~d~~R~~~~~~~~~gl~lD~Sk~~i~~~~l~~l~~la~~~~l~~~~~~m~~G~ 123 (606)
+++++++|++|++|++++++.+++++| ||+|+++|+++.+||++|||||+||++++++|++||++++|+++|++||+||
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~R~~~~~~~~~~l~~d~sk~~~~~~~~~~l~~la~~~~l~~~~~~m~~G~ 84 (533)
T PRK14095 6 NFLDLESFKILQELAPEPLDLTLPGVL-SEERIKKYSLSGEGFTYNYATERVDDRILAALQNLADEAELIEKMKAMQNGA 84 (533)
T ss_pred CcccCHHHHHHHHHHHhhccCChhhhc-CchhHHhceeecCCEEEEccCCcCCHHHHHHHHHHHHHCCcHHHHHHHhCcc
Confidence 467889999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred CCC-----CCCCcceeeeeccCCCCcccc-cCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCch
Q 007374 124 KIN-----STENRSVLHVALRAPRDAAIN-SDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFL 197 (606)
Q Consensus 124 ~iN-----~tE~R~vlH~aLR~~~~~~~~-~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~L 197 (606)
+|| .||+|+|||||||+|.+.++. ++|+++.++++++++||++|+++||+|+|+|+|||+|++||+||||||+|
T Consensus 85 ~iN~~~~~~tE~R~vlH~alR~~~~~~~~~~~~~~~~~~v~~~l~~~~~f~~~vr~g~~~g~tg~~~~~VV~IGIGGS~L 164 (533)
T PRK14095 85 VINRIEGFPSENRPVLHTATRGQVGDSVLTDEAEDMAEFSKRELERLAEFLKKVRSGEIKNSNGKKFTTVVQIGIGGSDL 164 (533)
T ss_pred cccCCCCCCCCCcchhhHHhhCcCCCCccccCcchhhHHHHHHHHHHHHHHHHHHcCCccCCCCCccceEEEEecCcchH
Confidence 999 999999999999999888764 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007374 198 GPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSA 277 (606)
Q Consensus 198 Gp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~ 277 (606)
||+|++++|.++. ..+.++||++|+||..+.+++..+||++|||||+||||||.||++|++.+++|+++.+ . .
T Consensus 165 Gp~av~~AL~~~~-----~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLfiviSKSGtT~ETl~n~~~~r~wl~~~G-~-~ 237 (533)
T PRK14095 165 GPKALYLALKNYA-----KKDKRVHFISNVDPDDAAEVLSEIDLAKTLFIVVSKSGTTLETAANEEFVRDALKKAG-L-D 237 (533)
T ss_pred hHHHHHHHHHhhc-----cCCceEEEECCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHcC-c-c
Confidence 9999999999753 2345899999999999999999999999999999999999999999999999997763 3 3
Q ss_pred cCCeEEEEcCCchHHHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHH
Q 007374 278 VAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIP 357 (606)
Q Consensus 278 ~~~h~vaVT~~~~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p 357 (606)
+.+||||||++.+.+.++ +...++|++|||||||||+||+|||||+|+++|+|+|++||+||++||+||+++|+++|+|
T Consensus 238 ~~~h~VaVT~~~s~l~~~-~~~~~~f~~~d~VGGRfSv~SavGLlp~ala~G~d~~~~lL~GA~~mD~hf~~~~~~~N~p 316 (533)
T PRK14095 238 YKKHFIAVTSEGSPMDDE-SGYLEVFHMWDSIGGRFSSTSMVGGVVLGFAFGFEVFKEFLKGAAAMDKAALNPNIRENLP 316 (533)
T ss_pred ccceEEEEECCchHHHhh-cCccccCCCCCCCCCcccccccchHHHHHHHcChHHHHHHHHHHHHHHHHHhcCChhhCHH
Confidence 678999999988766665 3555799999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcCCCcccccccccccCCCCCCCCcccceeeee
Q 007374 358 VLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQ 437 (606)
Q Consensus 358 ~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~q 437 (606)
+++|++.+||.+++|+++++++||+++|++||+|+|||+||||||+++++|++++++|||++||++||+|||||+|||||
T Consensus 317 ~l~All~~~~~~~~g~~~~~~lpY~~~L~~f~~~lqQL~mESnGK~v~~~G~~v~~~t~pi~wg~~Gt~~QHSf~Qllhq 396 (533)
T PRK14095 317 LLAALIGIWNRNFLGYPTTAVIPYSQALERFPAHLQQLDMESNGKSVNRFGEPINFKTGPIIWGEPGTNGQHSFFQLLHQ 396 (533)
T ss_pred HHHHHHHHHHhccCCCCeEEEecchHHHHHHHHHHHHHHHHhcCCccccCCCCcccCcccceecCCCCCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cccceeEEEeeccCCcc--ccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEeC
Q 007374 438 G-RVIPCDFIGVVKSQQPV--YLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLL 514 (606)
Q Consensus 438 G-~~~~~dfi~~~~~~~~~--~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l 514 (606)
| +.+|+|||.+.+++++. .+++ ..+|+.|++||+||.++|+.|++.+ .+|+.++|||||++|.+
T Consensus 397 G~~~~~~dFI~~~~~~~~~d~~i~~--~~~~~~L~an~~Aq~~al~~G~~~~-----------~~~~~~~gnrPs~~i~l 463 (533)
T PRK14095 397 GTDIVPVEFIGFKESQLGQDIVIQG--STSQQKLFANLIAQIIALACGKENT-----------NPNKNFKGNRPSSLLVA 463 (533)
T ss_pred CCCCcceeEEEEcCCCCcccccCCC--CchHHHHHHHHHHHHHHHhcCCccc-----------hhhhhcCCCCceEEEEe
Confidence 9 68899999988765332 2332 2478999999999999999999876 37999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHHHHHHHHHhhhcccCCCCCCCCChhHHHHHHHHH
Q 007374 515 PSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYL 589 (606)
Q Consensus 515 ~~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~~~~~~d~st~~li~~~~ 589 (606)
+++||++||+|||+|||+|+++|++||||||||||||+||++|++|+..+.+. . .++|+||++||+++.
T Consensus 464 ~~l~p~~lG~LialyEh~v~v~G~lwgIN~FDQ~GVElGK~la~~il~~~~~~-----~-~~~d~st~~li~~~~ 532 (533)
T PRK14095 464 KQLTPYTLGALLAHYENKVMFQGFCWNINSFDQEGVQLGKVLANQILGIMKGE-----A-PGEFPEADGLLKLFN 532 (533)
T ss_pred CCCCHHHHHHHHHHHHHHHHHheeecCcCCCCchHHHHHHHHHHHHHHHhcCC-----C-CCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999642 1 469999999998874
No 6
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=100.00 E-value=2.1e-133 Score=1101.33 Aligned_cols=481 Identities=51% Similarity=0.793 Sum_probs=436.9
Q ss_pred ecccCcCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHH
Q 007374 89 DYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFS 168 (606)
Q Consensus 89 D~Sk~~i~~~~l~~l~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa 168 (606)
|||||+||++++++|+++|++++|++++++||+|++||.||+|+|||+|||+|...++.++|+++.+.++..+++|++|+
T Consensus 1 d~sk~~~~~~~~~~l~~la~~~~l~~~~~~~~~g~~iN~tE~r~vlH~alr~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ 80 (486)
T PF00342_consen 1 DYSKQRIDEETLDLLIELAEEAGLPEKIEAMFSGEKINITENRAVLHTALRAPSGQSLLVDGKDVLGWVDAPLQRMKEFA 80 (486)
T ss_dssp EETTSS--HHHHHHHHHHHHHTTHHHHHHHHHTTHHHBTTTTB--HHHHHTCTTTT-HEETTEESHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcChHHHHHHHhCcchhhccccHhHHHHHHHcCCCCCccCCCchhHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEE
Q 007374 169 ETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVV 248 (606)
Q Consensus 169 ~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iv 248 (606)
++||++.|++++|++|++||+||||||+|||+|++++|.++.. ..+++||++|+||.++.++++.|||++|+|||
T Consensus 81 ~~i~~~~~~~~~~~~~~~vV~IGIGGS~LGp~~~~~al~~~~~-----~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iV 155 (486)
T PF00342_consen 81 ERIRSGAWKGRTGKPITDVVVIGIGGSSLGPRALYEALKPYFS-----NPPRLHFLDNVDPADLARLLERLDPETTLFIV 155 (486)
T ss_dssp HHHHTTHSBHTTSSB-SEEEEE--GGGTHHHHHHHHHTGGGTT-----SSCEEEEESSSSHHHHHHHHTTSTGGGEEEEE
T ss_pred HHHHHHHHccccCCceeEEEEEecchhhHHHHHHHHHhhhhcc-----cceEEEEeccCChHHHHHHHhcCCCccEEEEE
Confidence 9999999999999999999999999999999999999998642 34799999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHHHHHhcC-CcccCCeEEEEcCCchHHHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhh
Q 007374 249 VSKTFTTAETMLNARTLREWISTALG-PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQ 327 (606)
Q Consensus 249 iSKSGtT~ETl~n~~~~~~~l~~~~g-~~~~~~h~vaVT~~~~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala 327 (606)
|||||+|+||+.|++.+++||+++++ ++.+.+||||||++.+.+.++|++++++|+|||||||||||||+|| ||+|++
T Consensus 156 iSKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~d~VGGRfSv~SaVG-lp~ala 234 (486)
T PF00342_consen 156 ISKSGTTIETLANFRIAREWLEKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIPDWVGGRFSVLSAVG-LPLALA 234 (486)
T ss_dssp EESSST-HHHHHHHHHHHHHHHHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--TTS-GGGTTTSGGG-HHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHHhhcCccccccceEEEeCCCchHHHHHHHHHhcceeccccccccccCCCCCc-hHHHHH
Confidence 99999999999999999999999987 4557899999999999999999998899999999999999999999 999999
Q ss_pred cCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcC
Q 007374 328 YGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSID 407 (606)
Q Consensus 328 ~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~ 407 (606)
.|++.|++||+||++||+||+++|+++|+|++||++++|+.+++|+++++++||+++|+.|++||||||||||||+++.+
T Consensus 235 ~G~~~~~~lL~GA~~md~~f~~~~~~~N~p~~~All~~~~~~~~g~~~~~i~~Y~~~L~~l~~w~qQL~mESlGK~~~~~ 314 (486)
T PF00342_consen 235 GGFIDFEELLAGARAMDEHFRSAPLEKNPPVLYALLRVWNSNFLGYNIEVILPYSPRLRRLPAWLQQLWMESLGKSVDRD 314 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTST-SEEEEEESSGGGTTHHHHHHHHHHHHHSESBTTT
T ss_pred cChhhHHHHHHHHHHHHHHhcCCChhhCHHHHHHHHHHHHHhhhccchhccccCChHHHHHHHHHHHhcccccchhhccc
Confidence 77755999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHH
Q 007374 408 GVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPE 486 (606)
Q Consensus 408 G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~ 486 (606)
|+++++.|+|++||++||+|||||+||+||| +.+|+|||.+.++.... ..+|+.+++||++|.++|+.||+.+
T Consensus 315 G~~~~~~t~pi~~G~~Gt~dqHS~~Qll~qG~~~~~~~fi~~~~~~~~~------~~~~~~l~~n~~~q~~~L~~Gk~~~ 388 (486)
T PF00342_consen 315 GEPVDYGTGPIVWGGVGTNDQHSFFQLLHQGGRDKPVDFILFVKNPHDD------LDIHDILLANCLAQLDALAFGKTLE 388 (486)
T ss_dssp SSBESSEESEEEEEEETTGGGGTSHHHHHHSSSSCEEEEEEEECCSSSG------CHHHHHHHHHHHHHHHHHHHTBBHH
T ss_pred CceeeecCCccccCCCCCccccccceeecccCceEEEEEEEEccccccc------cccchhhhhhhhHHHHHHHCCCCHH
Confidence 9999999999999999999999999999998 68899999987765533 4578899999999999999999999
Q ss_pred HHHhcccCC---CCCCCccCCCCcceeEEeCCCCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHHHHHHHHH
Q 007374 487 QLQKENVAP---HLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQ 563 (606)
Q Consensus 487 ~l~~~~~~~---~l~~~~~~~gnrPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~la~~i~~~ 563 (606)
+++++.... ++.+|+.++|||||++|+++++||++||+|||+|||+|+++|+|||||||||||||+||++|++|+..
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~Gn~Ps~~I~l~~l~~~~lG~Lia~yE~~~~v~g~l~~INpFDQpGVElgK~~a~~il~~ 468 (486)
T PF00342_consen 389 ELNKEAFAATAETLAAHKVFPGNRPSTTILLDELDPYSLGALIAFYEHKTFVQGYLWGINPFDQPGVELGKKLAKKILGK 468 (486)
T ss_dssp HHHHHHHHTHHHHHHHGHHBTTT-EEEEEEESESSHHHHHHHHHHHHHHHHHHHHHHTS-TT--GGGHHHHHHHHHHHHH
T ss_pred HHHhhhccccHHHHHHhhhhcCCcceeeeecccCCchHHHHHHHHHHHHHHHhhhhcCcCCCCCccHHHHHHHHHHHHhh
Confidence 998865443 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCCChhHHHHH
Q 007374 564 LHASRMKREPIEGFNFSTTTLL 585 (606)
Q Consensus 564 l~~~~~~~~~~~~~d~st~~li 585 (606)
+... +...+||+||++||
T Consensus 469 ~~~~----~~~~~~d~st~~l~ 486 (486)
T PF00342_consen 469 LEGE----EQVSGHDSSTAALI 486 (486)
T ss_dssp HSSS----STCCSSHHHHHHHH
T ss_pred ccCC----CCCCCCChhhhhhC
Confidence 8752 33467999999997
No 7
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=2.8e-119 Score=988.51 Aligned_cols=443 Identities=30% Similarity=0.443 Sum_probs=399.0
Q ss_pred hcccCCeEEecccCcCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHH
Q 007374 80 MVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWK 159 (606)
Q Consensus 80 ~~~~~gl~lD~Sk~~i~~~~l~~l~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~ 159 (606)
..+..||++||||+++|+++++.|.++++++ .+++++|++|+++|.||+|+|+|+|||+|...+ |.++.+++++
T Consensus 16 ~~~~~g~~lD~sr~~~~~~~l~~l~~~a~~a--~~~~~~l~~G~~~N~tE~R~v~H~~LR~p~~~~----~~~~~~~i~~ 89 (528)
T PRK14096 16 YHPELGLWLDISRMNFDDAFLESLEPKFQKA--FAAMAALEAGAIANPDEGRMVGHYWLRNPELAP----TPEIRAEITE 89 (528)
T ss_pred ecCCCCEEEEccCCCCCHHHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCchhhhHhhcCCccCC----CcchhHHHHH
Confidence 3455789999999999999999999999875 799999999999999999999999999987643 7889999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccC
Q 007374 160 VLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGL 239 (606)
Q Consensus 160 ~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~l 239 (606)
++++|++|+++||+|+|+|++|++|++||+||||||+|||+|+++||.+.. .++++||+||+||+.+.++++.|
T Consensus 90 ~l~~i~~fa~~i~~G~~~~~~g~~~~~vV~IGIGGS~LGp~~v~~AL~~~~------~~~~~~f~dN~Dp~~~~~~l~~l 163 (528)
T PRK14096 90 TLAQIEAFAAKVHSGTIKPPNGEKFTDVLWIGIGGSALGPQFVAEALQPNS------DGLNIHFIDNTDPDGIDRVLAEL 163 (528)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCCCCeEEEECCCcchHHHHHHHHHHhhcC------CCCcEEEEcCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998642 34689999999999999999999
Q ss_pred C--CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCchHHHHcCCCCC--CeeccCCCCCccchh
Q 007374 240 N--PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPN--NAFAFWDWVGGRYSV 315 (606)
Q Consensus 240 d--~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~A~~~Gi~~~--~~f~~pd~VGGRfSv 315 (606)
+ |++|||||+||||+|.||++|++.+++|+++++ . ...+|+||||++...++++++++. ++|+||||||||||+
T Consensus 164 ~~~~~~TLviViSKSGtT~ET~~n~~~~~~~l~~~G-~-~~~~h~VAVT~~~s~L~~~A~~~g~~~~F~~~d~VGGRfSv 241 (528)
T PRK14096 164 GDRLATTLVVVISKSGGTPETRNGMLEAKAAYEAAG-L-DFASHAVAITMKGSKLDQLAQSEGWLARFPMWDWVGGRTSE 241 (528)
T ss_pred cCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhhc-c-cccceEEEEECCCcHHhhhccccCceeEeeCCCCCCCcccc
Confidence 8 999999999999999999999999999997653 3 357899999998877888877654 699999999999999
Q ss_pred hhchhhHHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHH
Q 007374 316 CSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQV 395 (606)
Q Consensus 316 ~SaVGLlPlala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL 395 (606)
||+|||||+|+ +|+| |++||+||++||+||+++|+.+|+|++||++.+|+.+++|+++++++||+++|+.|++|+|||
T Consensus 242 ~SaVGLlP~al-~G~d-i~~lL~GA~~md~~~~~~~~~~N~~~llal~~~~~~~~~g~~~~~vlpY~~~L~~f~~wlqQL 319 (528)
T PRK14096 242 TSAVGLLPAAL-QGID-IRAFLAGAKQMDEATRVPDLKNNPAALLALAWYYAGDGKGKKDMVVLPYKDRLLLFSRYLQQL 319 (528)
T ss_pred cchhhHHHHHH-hCcC-HHHHHHHHHHHHHHhhcCCcccCHHHHHHHHHHHHHhcCCCCeEEEEECcHHHHHHHHHHHHH
Confidence 99999999999 5999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhccc
Q 007374 396 SMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFA 474 (606)
Q Consensus 396 ~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~a 474 (606)
+||||||+++++|++++ +|+++||++||+|||||+|||||| +.+|+|||.+.++.++..+
T Consensus 320 ~mES~GK~~~~~G~~v~--~G~~v~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~~~~----------------- 380 (528)
T PRK14096 320 VMESLGKELDLDGNVVH--QGIAVYGNKGSTDQHAYVQQLRDGVDNFFVTFIEVLEDRQGSSI----------------- 380 (528)
T ss_pred hhhccCCccccCCcCcc--ccCeEecCCCCCchHHHHHHHHccCCCeeEEEEeEcCCCCccch-----------------
Confidence 99999999999999884 899999999999999999999999 5889999998765332111
Q ss_pred chhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEeCCCCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhH
Q 007374 475 QPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGK 554 (606)
Q Consensus 475 q~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK 554 (606)
++..|++..+++......+ .+++++|||||++|+++++||++||+|||+|||+|+++|+|||||||||||||+||
T Consensus 381 ---~~~~g~~~~~~l~~~~~gt--~~al~~g~rPs~~I~l~~l~p~~lGaLialyE~~v~~~g~l~~IN~FDQpGVE~GK 455 (528)
T PRK14096 381 ---EVEPGVTSGDYLSGFLQGT--RQALYENGRQSITITIPEVNPRTLGALIALFERAVGLYASLVNINAYHQPGVEAGK 455 (528)
T ss_pred ---hhccCCCHHHHHHHHHhCc--HhhhhcCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCCccHHHHH
Confidence 1123555555443222222 24668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007374 555 SLATQVRK 562 (606)
Q Consensus 555 ~la~~i~~ 562 (606)
++|++|++
T Consensus 456 ~~a~~il~ 463 (528)
T PRK14096 456 KAAAAILD 463 (528)
T ss_pred HHHHHHHH
Confidence 99999986
No 8
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-109 Score=894.84 Aligned_cols=441 Identities=47% Similarity=0.757 Sum_probs=410.7
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHH
Q 007374 85 GILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKI 164 (606)
Q Consensus 85 gl~lD~Sk~~i~~~~l~~l~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i 164 (606)
+|++||||++++++++..|.++++++++.+++++||.|+++| ||+|+|||+++| .+++++.+++|
T Consensus 3 ~l~~d~sk~~~~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~n-~e~r~~lh~~~r--------------~~e~~~vl~~~ 67 (446)
T COG0166 3 GLLLDYSKNLLNDETLELLLELADEADLAEKIDAMFKGAKIN-TEGRAVLHTALR--------------MPEVDEVLKRM 67 (446)
T ss_pred cEEEehhhccCchHHHHHHHHHHHHHhHHHHHHHhhcCCCCC-cccchhhhhhhh--------------hHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999 999999999999 34678899999
Q ss_pred HHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCE
Q 007374 165 KEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETT 244 (606)
Q Consensus 165 ~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~T 244 (606)
++|++++|+| +|++||+||||||+|||+|++++|.++. ..++++||++|+||+++.+++..++|++|
T Consensus 68 ~~f~~~~~~g--------~~~~IV~IGIGGS~LG~~~~~~aL~~~~-----~~~~~~~Fv~nid~~~~~~~l~~i~~~~t 134 (446)
T COG0166 68 KAFADDVRSG--------KITDIVNIGIGGSDLGPRAVTEALRPYA-----PNGPRVHFVSNVDPTYLAEVLKKLDPETT 134 (446)
T ss_pred HHHHhhcccC--------ccceEEEeCCchhHHHHHHHHHHhhhhc-----cCCCceEEecCCCchhhhHHHhccCcccE
Confidence 9999999987 5999999999999999999999999875 24589999999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCchHHH-HcCCCCCCeeccCCCCCccchhhhchhhHH
Q 007374 245 LVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVE-KFGIDPNNAFAFWDWVGGRYSVCSAVGVLP 323 (606)
Q Consensus 245 L~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~A~-~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlP 323 (606)
+|+|+||||||+||+.|++.+++|+.++ .+...+|||+++++..+.+ .+++...++|.||||||||||+||+||++|
T Consensus 135 l~iviSKSGtT~Et~~n~~~~r~~~~~~--~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VGGRfS~~SaVG~l~ 212 (446)
T COG0166 135 LFIVISKSGTTLETLTNFRLARKWLEKK--EEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVGGRYSVLSAVGLLP 212 (446)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHhh--hhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCCCCCccchhHHHHHHH
Confidence 9999999999999999999999999887 4556789999998876544 888887789999999999999999999999
Q ss_pred HHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCc
Q 007374 324 LSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKG 403 (606)
Q Consensus 324 lala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~ 403 (606)
+++. |.| |+++|+||++||+||+++++++|+|+++|++++|+.+++|+.+++++||+++|++|++|+|||+|||+||+
T Consensus 213 ~a~~-~~~-~~~lL~Ga~~~d~~~~~~~l~~N~~~l~ali~~~~~~~~G~~~~~i~~Y~~~l~~f~~~~qQL~~ES~GK~ 290 (446)
T COG0166 213 LALG-GID-FKELLEGAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDPYLEYFPAWLQQLNMESNGKS 290 (446)
T ss_pred HHHh-ccc-HHHHHHHHHHHHHHhccCChhhcHHHHHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHHhccCCC
Confidence 9986 888 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCC
Q 007374 404 VSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVG 482 (606)
Q Consensus 404 ~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~al~~G 482 (606)
+..+|.++.+.|++++||.+|+++||+|+|++||| +.+|++||.+.+...+. ..+|+.+++|+++|..++++|
T Consensus 291 ~~~~~~~~~~~t~~~~~g~~g~~gqh~ffql~~qgt~~~p~~~I~~~~~~~~~------~~~~~~L~~~~~aq~~~~a~~ 364 (446)
T COG0166 291 VKGIGPEVNFHTDPISWGEPGTNGQHAFFQLLHQGTDLKPADFIEIEESIEDL------DGHHDKLLSNFLAQTEALAFG 364 (446)
T ss_pred ccCcCCccccCCCceeeccccccCceeEEEEEEecccccchhhccccccccCc------cchHHHHHHhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 57899999998776654 236899999999999999999
Q ss_pred CCHHHHHhcccCCCCCCCccCCCCcceeEEeCCCCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHHHHHHHH
Q 007374 483 KTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 562 (606)
Q Consensus 483 k~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~la~~i~~ 562 (606)
++..+.. .||||+++|.++++||+++|+|+++|||+|+++|++||||||||||||+||++|++|+.
T Consensus 365 ~t~~~~~--------------~gn~P~~~i~~~~l~p~~~G~l~a~yE~~~~~~G~l~~in~FdQ~GVElgK~~~~~ll~ 430 (446)
T COG0166 365 KTLLAHT--------------AGNRPSNLILLRELTPYTLGALIALYEHKTFVQGVLWGINSFDQPGVELGKKLAFALLG 430 (446)
T ss_pred hhhhHhh--------------cCCCCceEEEecCCChhhhHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHhh
Confidence 9887632 39999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCCCChhH
Q 007374 563 QLHASRMKREPIEGFNFST 581 (606)
Q Consensus 563 ~l~~~~~~~~~~~~~d~st 581 (606)
.+.+. .....+|+||
T Consensus 431 ~~~~~----~~~~~~~~~~ 445 (446)
T COG0166 431 KLGGE----LSAELHDSST 445 (446)
T ss_pred hccCC----cccccccccc
Confidence 98752 2344588887
No 9
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1.2e-94 Score=787.47 Aligned_cols=420 Identities=26% Similarity=0.379 Sum_probs=345.9
Q ss_pred CCeEEeccc--CcCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHH
Q 007374 84 DGILLDYSR--QNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVL 161 (606)
Q Consensus 84 ~gl~lD~Sk--~~i~~~~l~~l~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l 161 (606)
.+|.+|+|+ ..++++.++.+.+..++ ..+++-++.. .++.+|= +++.|... ....+
T Consensus 2 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~----~~~~~lG-~~~lp~~~------------~~~~~ 59 (448)
T PRK14097 2 THIKFDYSKALSFVGEHELEYLQPQVKA-----AHQTLHNGTG----AGNDFLG-WLDLPENY------------DKEEF 59 (448)
T ss_pred CeEEEehhhhhccCCHHHHHHHHHHHHH-----HHHHHHhccC----CCCcccC-cccChhhc------------CHHHH
Confidence 478999887 57899988776666643 2344444431 1121221 35555421 13368
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhH-H--hhhCCceEEEe-ccCChHHHHHHhc
Q 007374 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEA-I--ECARGRQLRFL-ANVDPIDVAKSIT 237 (606)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~-~--~~~~~~~i~fl-~nvDp~~l~~~l~ 237 (606)
++|++|++++|++ +++||+||||||+|||+|++++|.+.... . ....+++++|+ +|+||.++.++++
T Consensus 60 ~~i~~~~~~~~~~---------~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~ 130 (448)
T PRK14097 60 ARIKKAAEKIKSD---------SDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLE 130 (448)
T ss_pred HHHHHHHHHHhcC---------CCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHh
Confidence 8999999999985 59999999999999999999999753110 0 00124688887 6799999999999
Q ss_pred cCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCch-----HHHHcCCCCCCeeccCCCCCcc
Q 007374 238 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLT-----LVEKFGIDPNNAFAFWDWVGGR 312 (606)
Q Consensus 238 ~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~-----~A~~~Gi~~~~~f~~pd~VGGR 312 (606)
.+|+++|+||||||||+|+||++|++.+++||++++|.+...+|+|+||++.+ .|++.|++ +|+||+|||||
T Consensus 131 ~l~~~~tl~iViSKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~---~f~ip~~VGGR 207 (448)
T PRK14097 131 YLKDKDFSINVISKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYE---TFVIPDDVGGR 207 (448)
T ss_pred hCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcC---EEeCCCCCCcc
Confidence 99999999999999999999999999999999776665556788999998653 67878886 99999999999
Q ss_pred chhhhchhhHHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHHHH
Q 007374 313 YSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHI 392 (606)
Q Consensus 313 fSv~SaVGLlPlala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~w~ 392 (606)
|||||+|||||+|++ |+| |++||+||++||+||+++++++|+|+++|++++|+. ..|+++++++||+++|+.|++||
T Consensus 208 fSvlSavGLlP~al~-G~d-i~~lL~GA~~m~~~~~~~~~~~N~a~l~A~~~~~~~-~~g~~~~vl~~Y~~~L~~f~~w~ 284 (448)
T PRK14097 208 FSVLTAVGLLPIAVA-GID-IDALMKGAADARKDYSSSDLSENPAYQYAAVRNILY-RKGYTTEILVNYEPSLQYFSEWW 284 (448)
T ss_pred cccccHhHHHHHHHh-hhh-HHHHHHHHHHHHHHhhcCChhhCHHHHHHHHHHHHH-hCCCCeEEEEEChHHHHHHHHHH
Confidence 999999999999997 999 899999999999999999999999999999998887 78999999999999999999999
Q ss_pred HHHhhHhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhh
Q 007374 393 QQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSN 471 (606)
Q Consensus 393 qQL~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n 471 (606)
|||||||+||+ |++ .++.+++||+|||||+|++||| +.++++||.+.++..+..+++. .++++.+ |
T Consensus 285 ~QL~aESlGK~----g~G------~~P~~~igt~dqHS~~Ql~~~G~~~~~~t~i~~~~~~~~~~i~~~-~~~~~~l--~ 351 (448)
T PRK14097 285 KQLFGESEGKD----QKG------IFPASANFSTDLHSLGQYIQEGRRNLFETVIKVEKPRKDLTIPED-EEDLDGL--N 351 (448)
T ss_pred HHHhccccccC----CCC------cccccCccCCCcchhhhHHHhCCCcEEEEEEeecCCCCcCCCCcc-cccchhh--h
Confidence 99999999996 443 2445678999999999999999 4666778877665444434432 1223333 3
Q ss_pred cccchhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEeCCCCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcchH
Q 007374 472 FFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVE 551 (606)
Q Consensus 472 ~~aq~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE 551 (606)
|+ .|++.++++++...+++.+|+ ++|||+++|.++++||++||+||++|||+|+++|+|||||||||||||
T Consensus 352 ~l-------~g~~~~~l~~~~~~at~~al~--~~~~P~~~I~l~~l~~~~lG~L~~~yE~~t~~~G~l~gINpFDQpGVE 422 (448)
T PRK14097 352 YL-------AGKTVDFVNKKAFEGTLLAHT--DGGVPNIVVNIPELDEYTFGYLVYFFEKACAISGYLLGVNPFDQPGVE 422 (448)
T ss_pred hh-------cCCCHHHHHHhhhhhhHhhHh--hCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCccHH
Confidence 33 699999999887778888887 899999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHH
Q 007374 552 LGKSLATQVRK 562 (606)
Q Consensus 552 ~gK~la~~i~~ 562 (606)
+||+++++++.
T Consensus 423 ~gK~~~~~~l~ 433 (448)
T PRK14097 423 AYKKNMFALLG 433 (448)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 10
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=2.3e-92 Score=767.34 Aligned_cols=410 Identities=30% Similarity=0.396 Sum_probs=332.7
Q ss_pred eEEeccc-------CcCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHH
Q 007374 86 ILLDYSR-------QNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVW 158 (606)
Q Consensus 86 l~lD~Sk-------~~i~~~~l~~l~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~ 158 (606)
+.+|||. ..++++.++.+.+.+++ ..+.|.++.. ++. |= ++..|... . .
T Consensus 3 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~~--lg-~~~lp~~~--------~----~ 58 (446)
T PRK00973 3 LKFDFSNVFEPNIGGGISIEDIESVKEKITS-----AVENLMEKEP----NGE--LG-FLELPYDR--------S----L 58 (446)
T ss_pred eEEehhhccccccccCCCHHHHHHHHHHHHH-----HHHHHHhcCC----CCc--CC-cccCcccc--------C----H
Confidence 6789887 45888888887777754 3555554431 222 11 24445421 0 1
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHh---hhCCceEEEeccCChHHHHHH
Q 007374 159 KVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIE---CARGRQLRFLANVDPIDVAKS 235 (606)
Q Consensus 159 ~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~---~~~~~~i~fl~nvDp~~l~~~ 235 (606)
++++++++ .+| .+++||+||||||+|||+|++++|.+...... .+.+++++|++|+||..+.++
T Consensus 59 ~~~~~~~~---~~~----------~~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~ 125 (446)
T PRK00973 59 DSYEELKE---WSK----------NFDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASI 125 (446)
T ss_pred HHHHHHHH---Hhh----------cCCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHH
Confidence 13444444 343 27999999999999999999999986421000 012357999999999999999
Q ss_pred hccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc-----hHHHHcCCCCCCeeccCCCCC
Q 007374 236 ITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL-----TLVEKFGIDPNNAFAFWDWVG 310 (606)
Q Consensus 236 l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-----~~A~~~Gi~~~~~f~~pd~VG 310 (606)
++.+++++|+||||||||||+||++|++.+++|| ++.|. ...+|+||||++. +.|+++||+ +|++|+|||
T Consensus 126 l~~l~~~~Tl~iviSKSGtT~ET~~~f~~~~~~l-~~~g~-~~~~~~vaiTd~~~g~L~~~A~~~g~~---~f~ip~~VG 200 (446)
T PRK00973 126 LDVIDLEKTLFNVISKSGNTAETLANYLIIRGIL-EKLGL-DPKKHLVFTTDPEKGKLKKIAEKEGYR---TLEIPENVG 200 (446)
T ss_pred HHhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHH-HhcCc-cccceEEEEcCCCccchHHHHHHcCCc---EEeeCCCCC
Confidence 9999999999999999999999999999999999 56663 3577999999952 589999998 999999999
Q ss_pred ccchhhhchhhHHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHH
Q 007374 311 GRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAP 390 (606)
Q Consensus 311 GRfSv~SaVGLlPlala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~ 390 (606)
|||||||+|||+|++++ |+| |++||+||++||+||+++++++|+|+++|++.+|+.+ .|+++++++||+++|++|++
T Consensus 201 GRfSvlSaVGL~p~a~~-G~d-i~~lL~GA~~m~~~~~~~~~~~N~a~~~a~~~~~~~~-~g~~~~vl~~Y~~~L~~f~~ 277 (446)
T PRK00973 201 GRFSVLTPVGLAPAAAL-GID-IEELLEGAKEMDKICEKEDIFKNPALLNALIHYLYYN-RGKNISVMMPYSERLKYFGD 277 (446)
T ss_pred cceeeecHHHHHHHHHh-Ccc-HHHHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHh-CCCCeEEEEEcHHHHHHHHH
Confidence 99999999999999986 999 8999999999999999999999999999999888765 89999999999999999999
Q ss_pred HHHHHhhHhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEeeccCCccccccccccchhhhh
Q 007374 391 HIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELM 469 (606)
Q Consensus 391 w~qQL~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~ 469 (606)
|||||||||+||+ | +|++|||++||+|||||+||+||| +.++++||.+.++..+..++.. +++..-
T Consensus 278 w~~QL~~ES~GK~----~------~G~~P~~~~Gt~dqHS~~Ql~~qG~~~~~~tfi~v~~~~~~~~i~~~---~~~~~~ 344 (446)
T PRK00973 278 WYRQLWAESLGKK----G------VGQTPVKALGATDQHSQLQLYMEGPKDKIITFLKVEKYRRDVEIPYE---YEDIEE 344 (446)
T ss_pred HHHHHHHHhcCCC----C------CCCceecCCCCccHHHHHHHHHhCCCCeEEEEEEECCCCCccCCCcc---hhhhhH
Confidence 9999999999996 2 477899999999999999999999 5788999998765444333321 111111
Q ss_pred hhcccchhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEeCCCCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 007374 470 SNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWG 549 (606)
Q Consensus 470 ~n~~aq~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpG 549 (606)
.| ++.|+|.+++++.....+..++ .++|||+++|.++++||++||+||++|||+|+++|++||||||||||
T Consensus 345 l~-------~l~g~t~~~l~~~~~~at~~al--~~~~~P~~~I~l~~l~~~~lG~L~~~~E~~t~~~G~llgINpFDQPG 415 (446)
T PRK00973 345 LS-------YLGGHKLSELINSEQKGTEIAL--TENGRPNVKITLDELNEYTVGQLFYMYEMQTAFMGELLNINAFDQPG 415 (446)
T ss_pred Hh-------hhcCCCHHHHHHHHhhhhHHHH--hhCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhcCcCCCCCcc
Confidence 12 2469999999775444443333 47899999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHH
Q 007374 550 VELGKSLATQVRK 562 (606)
Q Consensus 550 VE~gK~la~~i~~ 562 (606)
||+||++|++++.
T Consensus 416 VE~gK~~~~~~l~ 428 (446)
T PRK00973 416 VELGKKITYALLG 428 (446)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999854
No 11
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1.7e-88 Score=732.57 Aligned_cols=346 Identities=29% Similarity=0.416 Sum_probs=293.1
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHH
Q 007374 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (606)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~ 263 (606)
+++||+||||||+||++++++++.++. ..+++++|++|+||.++.++++.+++++|+|||+||||+|.||+++++
T Consensus 58 ~~~VV~iGIGGS~LG~~~l~~al~~~~-----~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT~ETl~~~~ 132 (410)
T PRK03868 58 IKNIVVIGIGGSSLGVKAIYSFLKNEK-----NNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTTIETISIFK 132 (410)
T ss_pred CCEEEEEecChHHHHHHHHHHHHHhhc-----cCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999999996531 124689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccCCeEEEEcCCc----hHHHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhhcCchHHHHHHHH
Q 007374 264 TLREWISTALGPSAVAKHMVAVSTNL----TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKG 339 (606)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~~~----~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala~G~d~~~~lL~G 339 (606)
.+++|+... + . ..+|+++||++. +.|++.|++ +|++|+||||||||||+|||||+|++ |+| +++||+|
T Consensus 133 ~~~~~~~~~-~-~-~~~~~v~vTd~~s~L~~~a~~~g~~---~f~ip~~VGGRfSvlSavGLlP~a~~-G~d-i~~lL~G 204 (410)
T PRK03868 133 YLLSHFKLD-Q-E-LKKNFLFITDPDSKLEQFAKENNIK---CFNIPKNVGGRFSVLSAVGIVPLALC-GYD-IKALLEG 204 (410)
T ss_pred HHHHHhccc-c-c-cccEEEEEecCCchHHHhHHhcCCc---EEecCCCCCcceeecchhhHHHHHHh-Ccc-HHHHHHH
Confidence 999998432 2 2 467999999765 468888887 99999999999999999999999996 999 6999999
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcCCCcccccccccc
Q 007374 340 AWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEID 419 (606)
Q Consensus 340 A~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~l~~~tg~~~ 419 (606)
|++||+||.+++++ .+++++.+|+.++.|+++++++||+++|++|+.|||||||||+||++ |... .+|++|
T Consensus 205 A~~m~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~~L~~f~~w~~QL~~ES~GK~~---~~~~--~~G~~p 275 (410)
T PRK03868 205 AKACKDSFFEQKED----HILKKAYFYATHKNAYNINVLFSYSDALKGFNDWYVQLWGESLGKKQ---GYKT--RVGLTP 275 (410)
T ss_pred HHHHHHHhhcCCHH----HHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHhhhhccccc---cCCC--ceeeEE
Confidence 99999999877654 24555567888889999999999999999999999999999999984 3322 589999
Q ss_pred cCCCCCCCCcccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCCC
Q 007374 420 FGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLI 498 (606)
Q Consensus 420 ~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~~l~~~~~~~~l~ 498 (606)
||++||+|||||+||+||| +.+++|||.+.+++.+..++. ++...+.+ .+++.|++.+++++.....+..
T Consensus 276 ~~~~Gt~dqHS~~Ql~~qG~~~~~~tfi~~~~~~~~~~i~~----~~~~~~~~-----~~~l~g~~~~~~~~a~~~at~~ 346 (410)
T PRK03868 276 IGLIGSRDQHSFLQLIMEGPRDKTVTFIKIKDFQNAPKIPN----ISLKGLES-----LDFVNGVSFNELINAQCDATME 346 (410)
T ss_pred eccCCCCchhHHHHHHhcCCcCCCeEEEEEcCcCCCcCccc----cccccccc-----hhhhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999 578999999776544333332 11111111 2234789999987654433332
Q ss_pred CCccCCCCcceeEEeCCCCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHHHHHHHH
Q 007374 499 PHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 562 (606)
Q Consensus 499 ~~~~~~gnrPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~la~~i~~ 562 (606)
.+ .++|||+++|.++++||++||+||++|||+|+++|+|||||||||||||+||++|++++.
T Consensus 347 al--~~~~~P~~~i~l~~l~~~~lG~L~~~yE~~t~~~g~l~~INpFDQpGVE~gK~~~~~~l~ 408 (410)
T PRK03868 347 AL--IAEDIPVDVITLEKLDEFSIGYLIYYYELLTSAVGKMLGINTYDQPGVEVGKRILKEKLQ 408 (410)
T ss_pred HH--HhCCcCeEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhcCcCCCCCccHHHHHHHHHHHHh
Confidence 22 479999999999999999999999999999999999999999999999999999999753
No 12
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=100.00 E-value=7.6e-65 Score=587.10 Aligned_cols=335 Identities=27% Similarity=0.389 Sum_probs=270.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHH
Q 007374 152 NVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPID 231 (606)
Q Consensus 152 ~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~ 231 (606)
++..+++..+++|++|+++||++ +|++||+||||||+|||+++++++.... ..++++|++|+||..
T Consensus 431 ~~~~~~~~~l~~i~~fa~~Ir~~--------~~d~VVviGIGGS~LG~~~l~~~l~~~~------~~p~l~~ldn~DP~~ 496 (948)
T PRK09533 431 DIVEDELAHLAEYEAFAEEVRAE--------GFTDAVVLGMGGSSLGPEVLAETFGQRD------GFPKLHVLDSTDPAQ 496 (948)
T ss_pred hccHHHHHHHHHHHHHHHHHhcC--------CCCEEEEEccChhHHHHHHHHHHHHhcC------CCceEEEEeCCChHH
Confidence 55667888999999999999975 4899999999999999999999887431 236789999999999
Q ss_pred HHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc----hHHHHcCCCCCCeeccCC
Q 007374 232 VAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL----TLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 232 l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~----~~A~~~Gi~~~~~f~~pd 307 (606)
+.++++.+|+++|+|||+||||+|.||+++++++++|+.+++|. ..++|||+||++. +.|+++|++ ++|.+|+
T Consensus 497 v~~~l~~~~~e~TLvIViSKSGtT~ET~sa~~~~~~~l~~~~g~-~~~~~~VaVTdpgs~L~~~A~~~G~~--~vf~~~p 573 (948)
T PRK09533 497 VRALEAAVDLARTLFIVSSKSGGTLEPNIFKDYFFARVKEVLGA-KAGRHFVAVTDPGSSLEKVAKEDGFR--KIFHGDP 573 (948)
T ss_pred HHHHHhhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHhhhhccc-ccCCeEEEEeCCCChHHHHHHHcCCe--eEecCCC
Confidence 99999999999999999999999999999999999999776664 4678999999843 567889996 5999999
Q ss_pred CCCccchhhhchhhHHHHhhcCchHHHHHHHHHHHHHHHhh-CCCCCCCHHHHHHH-HHHHHHhcCCCCeEEEeeChhhh
Q 007374 308 WVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFI-SAPYEKNIPVLLGL-LSIWNVSFLGHPARAILPYSQAL 385 (606)
Q Consensus 308 ~VGGRfSv~SaVGLlPlala~G~d~~~~lL~GA~~md~~f~-~~~~~~N~p~~lAl-l~~~~~~~~g~~~~~llpY~~~L 385 (606)
|||||||+||+|||+|++++ |+| +++||+||++|+++|. +.|+.+|+|+++|+ +.+|+. .|+. .++++|+++|
T Consensus 574 ~VGGRYSVLSavGLvPaa~~-GiD-i~~lL~GA~~m~~~~~~~~~~~~Npa~~Laaal~~~~~--~Gr~-~V~i~Ys~~L 648 (948)
T PRK09533 574 DIGGRYSVLSPFGLVPAAAA-GID-VRALLDSALAMVRSCGPSVPPADNPGVQLGLALGVAAT--QGRD-KVTIVASPAI 648 (948)
T ss_pred CCCcchHHhhhhhhHHHHHh-Cch-HHHHHHhHHHHHHHhccCCCcccCHHHHHHHHHHHHHh--CCCc-EEEEEChHHH
Confidence 99999999999999999986 999 7999999999999775 45888999999987 456643 4755 4567799999
Q ss_pred hhHHHHHHHHhhHhCCCccCcCCCc-ccccccccccCCCCCCCCcccceeeeeccccceeEEEeeccCCccccccccccc
Q 007374 386 EKFAPHIQQVSMESNGKGVSIDGVP-LPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSN 464 (606)
Q Consensus 386 ~~f~~w~qQL~mESlGK~~~~~G~~-l~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~~dfi~~~~~~~~~~~~~~~~~~ 464 (606)
+.|+.|+|||+|||+||. |+. +|.. + ..+|.+++++.+ .+ ||.+.... ..
T Consensus 649 ~~f~~W~~QL~aES~GK~----g~Gl~Pv~-~-e~vg~~~~~g~d----------~~---fi~l~~~~----------~~ 699 (948)
T PRK09533 649 ADFGAWAEQLIAESTGKE----GKGLIPID-G-EPLGDPAVYGND----------RV---FVYLRLAG----------EA 699 (948)
T ss_pred HHHHHHHHHHHHhhcCCC----CCCccCCc-c-eeecccCCCCCC----------cE---EEEEeccc----------cc
Confidence 999999999999999996 432 2221 1 223444432111 11 23221110 01
Q ss_pred hhhhhhhcccchhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEeCCCCChhhHHHHHHHHHHHHHHHHHhhccCC
Q 007374 465 HDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINS 544 (606)
Q Consensus 465 ~~~l~~n~~aq~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~L~gINp 544 (606)
+. .+.++.++|. .+|+|+++|.++ |+++||+||++||++|+++|++|||||
T Consensus 700 ~~----~~~at~~AL~-----------------------~~g~P~~~I~l~--~~~~LG~lf~l~E~atav~G~LlGINP 750 (948)
T PRK09533 700 DA----AQDAALAALE-----------------------AAGHPVVRIVLD--SAEQLGQEFFRWEMATAVAGAVLGINP 750 (948)
T ss_pred hH----HHHHHHHHHH-----------------------hcCCCeEEEEeC--ChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11 1112222221 468999999998 999999999999999999999999999
Q ss_pred CCCcchHHhHHHHHHHHHHhhh
Q 007374 545 FDQWGVELGKSLATQVRKQLHA 566 (606)
Q Consensus 545 FDQpGVE~gK~la~~i~~~l~~ 566 (606)
|||||||.||+++++++..++.
T Consensus 751 FDQPgVE~~K~~~~~ll~~~~~ 772 (948)
T PRK09533 751 FDQPDVEASKIKTRELTAAYEK 772 (948)
T ss_pred CCchhHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987643
No 13
>cd05016 SIS_PGI_2 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=100.00 E-value=3.2e-50 Score=384.71 Aligned_cols=163 Identities=52% Similarity=0.836 Sum_probs=144.9
Q ss_pred CeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEeeccC
Q 007374 374 PARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQ 452 (606)
Q Consensus 374 ~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~ 452 (606)
++++++||+++|++|++|+||||||||||+++++|+ +++||+++||++||+|||||+|++||| +.+++|||.+.++.
T Consensus 1 ~~~vl~~Y~~~L~~f~~w~qQL~~ES~GK~~~~~g~--~~~~G~~p~g~~Gt~dqHS~~Ql~~qG~~~~~~~fi~~~~~~ 78 (164)
T cd05016 1 KTHALLPYSQRLERFPAWLQQLDMESNGKSVTRDGE--DYPTGPIPWGAPGTNDQHSFFQLIHQGTKDKPVDFIAVKKPQ 78 (164)
T ss_pred CeEEEEEcHHHHHHHHHHHHHhHhhcCCCccccCCC--cCCceeEEecCCCCCCCCcccchhhcCCCcEEEEEEEECCcC
Confidence 468999999999999999999999999999999999 678999999999999999999999999 57899999988765
Q ss_pred CccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEeCCCCChhhHHHHHHHHHHH
Q 007374 453 QPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHR 532 (606)
Q Consensus 453 ~~~~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~~~~LG~Lia~yE~~ 532 (606)
++..-.......|+.+.+|++||.+||+ ++|||||++|.++++||+++|+||++|||+
T Consensus 79 ~~~~~~~~~~~~~~~l~a~~~a~~~aL~----------------------~~g~~P~~~i~l~~l~~~~lG~L~~~yE~~ 136 (164)
T cd05016 79 NDVLDYLAGKTLHDLLLANCLATREALM----------------------FPGGRPSNTIVLPELTPYTLGALLALYEHK 136 (164)
T ss_pred cchhhcccCCcHHHHHHHHHHHHHHHHH----------------------hcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4310001113578899999999988874 368999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCcchHHhHHHHHHH
Q 007374 533 IAVEGFIWGINSFDQWGVELGKSLATQV 560 (606)
Q Consensus 533 t~v~g~L~gINpFDQpGVE~gK~la~~i 560 (606)
|+++|++||||||||||||+||++|++|
T Consensus 137 t~~~G~l~gINpFDQpgVE~gK~~a~~i 164 (164)
T cd05016 137 TAVQGALLGINPFDQPGVELGKKLAKKI 164 (164)
T ss_pred HHHHHHhcCcCCCCChhHHHHHHHHhcC
Confidence 9999999999999999999999999864
No 14
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=100.00 E-value=1.2e-33 Score=269.49 Aligned_cols=156 Identities=51% Similarity=0.765 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhcc
Q 007374 159 KVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITG 238 (606)
Q Consensus 159 ~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ 238 (606)
+.+++|+++++++++| +++++||++|||||++|++++.+++.+.. ..+++++|++|+||+.+.+++..
T Consensus 2 ~~~~~i~~~~~~i~~~-------~~~~~iv~~GiGGS~lg~~~~~~~~~~~~-----~~~~~i~~~~~~D~~~~~~~~~~ 69 (158)
T cd05015 2 AELERIKEFAEKVRSG-------KKITDVVVIGIGGSDLGPRAVYEALKPYF-----KGGLRLHFVSNVDPDDLAELLKK 69 (158)
T ss_pred hHHHHHHHHHHHHhcC-------CCCCEEEEEecCccHHHHHHHHHHHHhhc-----cCCceEEEEeCCCHHHHHHHHHh
Confidence 3678999999999984 35899999999999999999999998753 23678999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCchHHHH-cCCCCCCeeccCCCCCccchhhh
Q 007374 239 LNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEK-FGIDPNNAFAFWDWVGGRYSVCS 317 (606)
Q Consensus 239 ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~A~~-~Gi~~~~~f~~pd~VGGRfSv~S 317 (606)
+++++|+||++||||+|.||+.+++.+++||++++++ ...+|+|+||++.+.+.+ .+....++|++|++||||||++|
T Consensus 70 ~~~~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~-~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~~~vggR~S~Ls 148 (158)
T cd05015 70 LDPETTLFIVISKSGTTLETLANARLAREWLEEAGGD-DLAKHFVAITDNGSGLLKKAGIEGLNTFEIPDWVGGRFSVLS 148 (158)
T ss_pred CCcccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccc-cccceEEEEcCCChHHHHHcCCCcceeeeCCCCCCchHHHHh
Confidence 9999999999999999999999999999999988764 367899999998764444 44444459999999999999999
Q ss_pred chhhHHHHhh
Q 007374 318 AVGVLPLSLQ 327 (606)
Q Consensus 318 aVGLlPlala 327 (606)
++||||+|++
T Consensus 149 ~~gl~p~a~~ 158 (158)
T cd05015 149 SVGGLPLALA 158 (158)
T ss_pred HHHHHHHHHC
Confidence 9999999973
No 15
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=100.00 E-value=1.1e-31 Score=284.77 Aligned_cols=286 Identities=14% Similarity=0.071 Sum_probs=216.1
Q ss_pred ccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 183 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 183 ~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
++++|+++|+|||+++.+.+...+... .+.++.++.... +.....+++++|++|+||+|.||+..+
T Consensus 33 ~~~~I~i~G~GgS~~~a~~~~~~l~~~-------~~~~~~~~~~~~-------~~~~~~~~dlvI~iS~SG~T~e~~~a~ 98 (337)
T PRK08674 33 KIDNIVISGMGGSGIGGDLLRILLFDE-------LKVPVFVNRDYT-------LPAFVDEKTLVIAVSYSGNTEETLSAV 98 (337)
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHHhc-------CCCcEEEeCccc-------hhhcCCCCcEEEEEcCCCCCHHHHHHH
Confidence 478999999999999999988776321 244555543211 222337889999999999999999999
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcCCc---hHHHHcCCCCCCeeccCCCCCccch----------hhhchhhHHHHhhcC
Q 007374 263 RTLREWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRYS----------VCSAVGVLPLSLQYG 329 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~---~~A~~~Gi~~~~~f~~pd~VGGRfS----------v~SaVGLlPlala~G 329 (606)
+.+++. +..+|+||++. +.|++.|++ ++.+|..++||+| +++.+|++|++.+
T Consensus 99 ~~a~~~----------ga~vIaIT~~~~L~~~a~~~~~~---~i~ip~~~~~r~s~~~ll~~l~~~l~~~Gl~~~~~~-- 163 (337)
T PRK08674 99 EQALKR----------GAKIIAITSGGKLKEMAKEHGLP---VIIVPGGYQPRAALGYLFTPLLKILEKLGLIPDKSA-- 163 (337)
T ss_pred HHHHHC----------CCeEEEECCCchHHHHHHhcCCe---EEEeCCCCcchhhHHHHHHHHHHHHHHcCCCccchh--
Confidence 998752 23689999865 456666887 8999999999999 9999999997753
Q ss_pred chHHHHHHHHHHHHHHHhhCC-CCCCCHHHHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcCC
Q 007374 330 FSVVEKFLKGAWSIDQHFISA-PYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDG 408 (606)
Q Consensus 330 ~d~~~~lL~GA~~md~~f~~~-~~~~N~p~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G 408 (606)
| ++++++|+.++.+.+... +..+|++..+|.- .+....++++ +..+..+..||+|+|+||.|-
T Consensus 164 -d-~~~~~~~l~~~~~~~~~~~~~~~~~A~~lA~~-------~~~~~pv~~g-s~~~~~~a~~~~~~~~Ena~~------ 227 (337)
T PRK08674 164 -E-VLETKIVLSELAEGLKEKVPTLKNLAKRLAGK-------LYGRIPVIYG-SGLTLAVAYRWKTQINENAKY------ 227 (337)
T ss_pred -h-HHHHHHHHHHHHHhhCcCCCcccCHHHHHHHH-------HhCCCCEEEe-CcccHHHHHHHHHHHHHhcCC------
Confidence 7 799999999999988643 4567887765541 2233666777 999999999999999999953
Q ss_pred CcccccccccccCCCCCCCCcccceeeeec-cccc-eeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHH
Q 007374 409 VPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIP-CDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPE 486 (606)
Q Consensus 409 ~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~-~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~ 486 (606)
.++.+.++.+||+..|++.+| +..+ +.|+.+.+. . |+.+ -++.++ +.+
T Consensus 228 ---------~~~~~~~pe~~H~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~----~~~~~~-----t~~ 277 (337)
T PRK08674 228 ---------PAFYNEIPELNHNEIVGYERPQSLLKYFFVVVLRDS-----------E-HPRI----KKRVEI-----TID 277 (337)
T ss_pred ---------ccccccCCcccccceeeccCchhhccceEEEEEcCC-----------c-cHHH----HHHHHH-----HHH
Confidence 123467899999999999999 4444 334433221 1 2111 001111 111
Q ss_pred HHHhcccCCCCCCCccCCCCcceeEEeCC-CCChhhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHHH
Q 007374 487 QLQKENVAPHLIPHKTFSGNRPSLSLLLP-SLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLA 557 (606)
Q Consensus 487 ~l~~~~~~~~l~~~~~~~gnrPs~~I~l~-~l~~~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~la 557 (606)
.+ -..+.|+..|..+ +.+++.+|+|++++++++++.|.++||||||||+||.+|+.+
T Consensus 278 ~~--------------~~~~~~~~~i~~~g~~~~~~l~~L~~~~d~as~~la~~~gvdP~~~~~ie~~K~~~ 335 (337)
T PRK08674 278 IL--------------TEAVINVIEIYPEGNSPLARIFSLIYLGDFASLYLAELRGVDPTPVPIIDYLKRRL 335 (337)
T ss_pred HH--------------HhcCCCeEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHHh
Confidence 11 1347899999999 699999999999999999999999999999999999999865
No 16
>cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries.
Probab=99.95 E-value=7.6e-28 Score=220.69 Aligned_cols=126 Identities=25% Similarity=0.334 Sum_probs=90.1
Q ss_pred EEeeChhhhhhHHHHHHHHhhHhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeeccccc-eeEEEeeccCCcc
Q 007374 377 AILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIP-CDFIGVVKSQQPV 455 (606)
Q Consensus 377 ~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~l~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~-~dfi~~~~~~~~~ 455 (606)
+.++|+++|+.|++|++|||+||+||+ |+.+ +|. .|||+.| ++.+ -|.+.+
T Consensus 3 ~~~~y~~~l~~f~~W~~QL~AES~GK~----G~Gl------~Pv------~~hS~~q-----p~~~~~d~~~i------- 54 (129)
T cd05798 3 VTIIASPGIASLGAWLEQLIAESTGKE----GKGI------IPV------DGEPLGD-----PAVYGDDRVFV------- 54 (129)
T ss_pred EEEecchhHHhHHHHHHHHHHHhcCCC----Ccee------eec------CCCCCCC-----CCCCCCCeEEE-------
Confidence 568899999999999999999999994 6533 322 2999999 3222 221100
Q ss_pred ccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCCCCCccCCCCcceeEEeCCCCChhhHHHHHHHHHHHHHH
Q 007374 456 YLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAV 535 (606)
Q Consensus 456 ~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~~l~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~~~~LG~Lia~yE~~t~v 535 (606)
++ +++++++.....++.++ ..+++|++.|.++ |++++|+||++||++|++
T Consensus 55 ~L--------------------------~~~~~~~~~~~at~~AL--~~~g~P~~~i~~~--~~~~lG~l~~~~e~ata~ 104 (129)
T cd05798 55 YL--------------------------RLAGEADADQEEALLAL--EAAGHPVIRIDLD--DAYDLGQEFFRWEMATAV 104 (129)
T ss_pred EE--------------------------echhhhHHHHHHHHHHH--HhCCCCeEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 00 00011000001111111 2468999999997 999999999999999999
Q ss_pred HHHhhccCCCCCcchHHhHHHHHHH
Q 007374 536 EGFIWGINSFDQWGVELGKSLATQV 560 (606)
Q Consensus 536 ~g~L~gINpFDQpGVE~gK~la~~i 560 (606)
+|++||||||||||||+||++++++
T Consensus 105 ~g~llgINpFDQPgVE~~K~~~~~~ 129 (129)
T cd05798 105 AGAVLGINPFDQPDVEASKIETRRL 129 (129)
T ss_pred HHHhcCcCCCCCccHHHHHHHHhcC
Confidence 9999999999999999999999853
No 17
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.55 E-value=3.3e-12 Score=134.54 Aligned_cols=278 Identities=13% Similarity=0.079 Sum_probs=177.5
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHH
Q 007374 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (606)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~ 263 (606)
+++|+++|+|||.++.+.+...+.... .+.+++++.+.. +.....+++++|++|+||+|.||+..++
T Consensus 21 ~~~I~i~G~G~S~~~a~~l~~~l~~~~------~~~~v~~~~d~~-------l~~~~~~~dlvI~iS~SG~t~e~~~a~~ 87 (308)
T TIGR02128 21 YDEIVICGMGGSGIAGRIISILLLEKS------FQGPVFVVKDYR-------LPRFVDGKTLLIAVSYSGNTEETLSAVE 87 (308)
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHHhC------CCccEEEEcCcc-------ccccCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 578999999999999999888776421 024555554322 2233478899999999999999999988
Q ss_pred HHHHHHHHhcCCcccCCeEEEEcCCc---hHHHHcCCCCCCeeccCCCCCccchh---hhchhhHHHHhhcCchHHHHHH
Q 007374 264 TLREWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRYSV---CSAVGVLPLSLQYGFSVVEKFL 337 (606)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~~~---~~A~~~Gi~~~~~f~~pd~VGGRfSv---~SaVGLlPlala~G~d~~~~lL 337 (606)
.+++ + ..++|+||++. +.|++.|.. ++.+|+.++||||+ ++++++++.... |.| +++.-
T Consensus 88 ~A~~----~------g~~ii~iT~~g~L~~~a~~~~~~---~i~vP~~~~~R~s~~~~~~~~l~~l~~~~-g~d-~~~~~ 152 (308)
T TIGR02128 88 EAKK----K------GAKVIAITSGGRLEEMAKERGLD---VIKIPKGLQPRAAFPYLLTPLILMLIKPL-GID-IEEAE 152 (308)
T ss_pred HHHH----c------CCEEEEECCCcHHHHHHHhcCCe---EEEcCCCCCCeeeHHHHHHHHHHHHHHHc-CCC-hHHHH
Confidence 8865 1 24689999865 467777887 89999999999999 788888887654 877 44432
Q ss_pred HHHHHHHHHh-hCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeeChhhhhhHHHHHHHHhhHhCCCccCcCCCccccccc
Q 007374 338 KGAWSIDQHF-ISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAG 416 (606)
Q Consensus 338 ~GA~~md~~f-~~~~~~~N~p~~lAll~~~~~~~~g~~~~~llpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~l~~~tg 416 (606)
.= . + ...+..+|++..+|.- ..|+ .-++..-++ .......+++-+.|--+--. ..+
T Consensus 153 ~~----l--~~~~~~~~~n~Ak~LA~~------l~~~-~pvi~~~~~-~~~~A~R~k~~l~enak~~a-~~~-------- 209 (308)
T TIGR02128 153 LL----E--GGLDTPKLKALAKRLAEE------IYNR-IPVIYSSSP-TRPIAERWKNEINENAKSPA-YYN-------- 209 (308)
T ss_pred HH----h--cCCccccccCHHHHHHHH------hhCC-CCEEEeCCc-cHHHHHHHHHHHHhhcCCcc-ccc--------
Confidence 11 1 1 2345678999999972 1332 334444444 77788888887787433321 111
Q ss_pred ccccCCCCCCCCcccceeeeeccccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCC
Q 007374 417 EIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPH 496 (606)
Q Consensus 417 ~~~~g~~Gt~dqHS~~Qll~qG~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~al~~Gk~~~~l~~~~~~~~ 496 (606)
.-+...|.....+-. +...+.++.+..... |... ....+. ..++
T Consensus 210 ------~lpe~~hn~i~~~~~-~~~~~~~~~~~d~~d-----------~~~~----~~r~~~------~~~~-------- 253 (308)
T TIGR02128 210 ------ILPELNHNEIEGLED-PYGLYEIVFMSDESD-----------HSRC----PKRVDI------TEKI-------- 253 (308)
T ss_pred ------cCCcccccceeeecc-ccccceEEEeecccc-----------chhH----HHHHHH------HHHH--------
Confidence 112222322222211 101112222221110 1000 000000 0111
Q ss_pred CCCCccCCCCcceeEEeCCCCCh-hhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHH
Q 007374 497 LIPHKTFSGNRPSLSLLLPSLNA-YNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSL 556 (606)
Q Consensus 497 l~~~~~~~gnrPs~~I~l~~l~~-~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~l 556 (606)
-+.|...|.-+.-++ ..+-.|+++-.++.++.+.+.|+||.+-|-++..|+.
T Consensus 254 --------~~~~~~~i~~~g~~~l~~l~~li~~~d~as~yLA~~~g~dP~~~~~i~~lk~~ 306 (308)
T TIGR02128 254 --------LGVVFISIYSRGNSLLARILSLIHLAGYVSVKLAELRGVDPEPVPPIDKLKRR 306 (308)
T ss_pred --------hCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccccHHHHHHHh
Confidence 145667777777776 8899999999999999999999999999988888874
No 18
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.17 E-value=2e-10 Score=104.39 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=82.5
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~ 265 (606)
+|+++|+|+|+..++.+...+... .+.++++..+.. +.....+++++|++|+||+|.|++..++.+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~-------~~~~~~~~~~~~-------~~~~~~~~dl~I~iS~SG~t~e~i~~~~~a 66 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDE-------AKIPVYVVKDYT-------LPAFVDRKTLVIAVSYSGNTEETLSAVEQA 66 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhc-------cCCCEEEecCcc-------CcCCCCCCCEEEEEECCCCCHHHHHHHHHH
Confidence 488999999999888777666531 245666654321 112346789999999999999999999888
Q ss_pred HHHHHHhcCCcccCCeEEEEcCCc---hHHHHcCCCCCCeeccCCCCCccchhhhchh
Q 007374 266 REWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVG 320 (606)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~---~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVG 320 (606)
++ + +-++|+||++. +.+.+.|+. ++++|+..|||+|+|.-+-
T Consensus 67 ~~----~------g~~iI~IT~~~~l~~~~~~~~~~---~~~~p~~~~~r~s~~~~~~ 111 (119)
T cd05017 67 KE----R------GAKIVAITSGGKLLEMAREHGVP---VIIIPKGLQPRAAFPYLFT 111 (119)
T ss_pred HH----C------CCEEEEEeCCchHHHHHHHcCCc---EEECCCCCCCceeHHHHHH
Confidence 75 1 24789999765 467777887 8999999999999998775
No 19
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=98.11 E-value=8.7e-05 Score=79.54 Aligned_cols=106 Identities=10% Similarity=0.034 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCC
Q 007374 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN 240 (606)
Q Consensus 161 l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld 240 (606)
.+.++++++.+.++ ++++|+++|.|+|+.....+...+... .+.++.+. ++..+.......-
T Consensus 29 ~~~l~~~~~~l~~~--------~~~~I~~~g~GsS~~aa~~~~~~~~k~-------~~i~v~~~---~~~~~~~~~~~~~ 90 (340)
T PRK11382 29 VPLVHAIVEEMVKR--------DIDRIYFVACGSPLNAAQTAKHLADRF-------SDLQVYAI---SGWEFCDNTPYRL 90 (340)
T ss_pred hHHHHHHHHHHHhC--------CCCEEEEEEechHHHHHHHHHHHHHHH-------cCCCeEEe---ccHHHHhcCCcCC
Confidence 45577788888763 478999999999998888887666542 23344332 3344443333222
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
.+++++|++|.||.|.||+..++.+++ + +-+.|+||.+. .+++.
T Consensus 91 ~~~~lvI~iS~SGeT~e~i~al~~ak~----~------Ga~~I~IT~~~~S~L~~~ 136 (340)
T PRK11382 91 DDRCAVIGVSDYGKTEEVIKALELGRA----C------GALTAAFTKRADSPITSA 136 (340)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHH----c------CCeEEEEECCCCChHHHh
Confidence 567899999999999999998888775 2 34789999754 45544
No 20
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=2.9e-05 Score=83.14 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCC
Q 007374 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN 240 (606)
Q Consensus 161 l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld 240 (606)
...+.++++.++.. ++++|+.+|.|||+-....+..++.... +.. +..+.+..+...-....
T Consensus 24 ~~~~~~l~~~l~~~--------~~~~I~~~g~GsS~~~~~~~~~~~~~~~-------~~~---~~~~~~se~~~~~~~~~ 85 (340)
T COG2222 24 RAVLAELADFLRKR--------GIDRILFVGCGSSLHAATPAKYLLEREL-------GLL---VAAIPASEFLTNGAKYL 85 (340)
T ss_pred hhHHHHHHHHHHhC--------CCcEEEEEecCchHHHHHHHHHHHHHhh-------Cce---eeeechhHHhccCcccc
Confidence 45566677777764 2799999999999988888877776432 223 33356666666666677
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
.+++++|++|+||+|.||+.+++.++. .+.+.|++|... .+|+.
T Consensus 86 ~~~~lvi~~S~SG~TpE~vaa~~~a~~----------~ga~~i~lT~~~dSpLa~~ 131 (340)
T COG2222 86 GEDSLVIAFSQSGNTPESVAAAELAKE----------GGALTIALTNEEDSPLARA 131 (340)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHhcc----------CCCeEEEEecCCCChhhhc
Confidence 888999999999999999999888862 245788999755 35544
No 21
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=97.97 E-value=4.3e-05 Score=82.89 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHH-HHHhcc
Q 007374 160 VLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-AKSITG 238 (606)
Q Consensus 160 ~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l-~~~l~~ 238 (606)
..+.+++|++.+.++ .+++|+++|.|+|+-....+..++... .+.++.... |..+ ......
T Consensus 26 ~~~~~~~~~~~~~~~--------~~~~i~~~g~GsS~~a~~~~~~~~~~~-------~~i~v~~~~---~~e~~~~~~~~ 87 (372)
T TIGR02815 26 LRPALNAFLEPLLAR--------ENLRIVLTGAGTSAFIGDALAPWLASH-------TGLNVSAVP---TTDLVSNPRQY 87 (372)
T ss_pred hHHHHHHHHHHHHhC--------CCCEEEEEechHHHHHHHHHHHHHHHh-------cCCCEEEEe---Ccccccccccc
Confidence 346677778877654 478999999999999888888777643 244554442 2222 111222
Q ss_pred CCC-CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHc
Q 007374 239 LNP-ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKF 295 (606)
Q Consensus 239 ld~-~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~ 295 (606)
+++ ++||+|.+|.||+|.||+.+++.+++ ++ .+-..++||.+. .+++.-
T Consensus 88 ~~~~~~~lvi~iSqSGeT~etv~a~~~ak~----~~----~g~~~i~it~~~~s~la~~a 139 (372)
T TIGR02815 88 LDPTRPTLLVSFARSGNSPESVAAVELADQ----LL----PECYHLVLTCNEEGALYRNA 139 (372)
T ss_pred cCCCCCeEEEEEeCCcCcHHHHHHHHHHHH----hC----CCCcEEEEEcCCCCHHHHhh
Confidence 333 57999999999999999999888876 21 123578898754 566553
No 22
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=97.85 E-value=0.00016 Score=65.85 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=73.5
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~ 265 (606)
+|+++|.|+|+.....+...+... .+.++.+. ++.++.........++.++|++|+||+|.|++..++.+
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a 70 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKE-------SKLPVFVY---NAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFA 70 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHh-------cCCceEEE---cHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 378999999988777776665532 12334333 33344333333346679999999999999999999988
Q ss_pred HHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhh
Q 007374 266 REWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQ 327 (606)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala 327 (606)
++ + +-.+|+||++. .+++.-. -++.++.. .|+..++=|+-+.++
T Consensus 71 ~~----~------g~~vi~iT~~~~s~la~~ad----~~l~~~~~----~~~~~~~~~~~~~~~ 116 (120)
T cd05710 71 KE----K------GATVIGLTDDEDSPLAKLAD----YVIVYGFE----IDAVEEKYLLLYMLA 116 (120)
T ss_pred HH----c------CCeEEEEECCCCCcHHHhCC----EEEEccCC----cCccchHHHHHHHHH
Confidence 76 1 24689999854 4555322 25777543 555556665555443
No 23
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=97.67 E-value=0.00061 Score=66.10 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCC
Q 007374 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN 240 (606)
Q Consensus 161 l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld 240 (606)
.+.++++++.+.+. +.|.++|+|+|..-++.+..-|.. -+.++++++... ...+
T Consensus 20 ~~~l~~~~~~i~~a----------~~I~i~G~G~S~~~A~~~~~~l~~--------~g~~~~~~~~~~-------~~~~- 73 (179)
T cd05005 20 EEELDKLISAILNA----------KRIFVYGAGRSGLVAKAFAMRLMH--------LGLNVYVVGETT-------TPAI- 73 (179)
T ss_pred HHHHHHHHHHHHhC----------CeEEEEecChhHHHHHHHHHHHHh--------CCCeEEEeCCCC-------CCCC-
Confidence 35678888888653 679999999997666666554432 245677764211 2233
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCC
Q 007374 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd 307 (606)
.++.++|++|.||.|.|++..++.+++ + +-.+|+||++. .+++.-. .+|.+|.
T Consensus 74 ~~~D~vI~iS~sG~t~~~i~~~~~ak~----~------g~~iI~IT~~~~s~la~~ad----~~l~~~~ 128 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAEKAKK----A------GAKVVLITSNPDSPLAKLAD----VVVVIPA 128 (179)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH----C------CCeEEEEECCCCCchHHhCC----EEEEeCC
Confidence 567788999999999999988888775 2 34689999854 4554322 2565554
No 24
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=97.67 E-value=0.00022 Score=64.57 Aligned_cols=87 Identities=26% Similarity=0.327 Sum_probs=60.7
Q ss_pred EEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHH
Q 007374 187 VVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLR 266 (606)
Q Consensus 187 VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~ 266 (606)
|.++|+|+|..-...+...|... .+.++.+.+ +..+......+ .++.++|++|.||.|.|++..++.++
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~-------~~~~~~~~~---~~~~~~~~~~~-~~~d~~I~iS~sG~t~e~~~~~~~a~ 70 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERL-------AGIPVEVEA---ASEFRYRRPLL-DEDTLVIAISQSGETADTLAALRLAK 70 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHh-------cCCceEEEe---hhHhhhcCCCC-CCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 78999999987777766655532 124444443 44444444443 57889999999999999999888887
Q ss_pred HHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 267 EWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 267 ~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
+ + +-++|+||++. .+++.
T Consensus 71 ~----~------g~~vi~iT~~~~s~la~~ 90 (126)
T cd05008 71 E----K------GAKTVAITNVVGSTLARE 90 (126)
T ss_pred H----c------CCeEEEEECCCCChHHHh
Confidence 5 1 34799999864 45543
No 25
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=97.61 E-value=0.00044 Score=65.79 Aligned_cols=121 Identities=11% Similarity=0.164 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHH------------
Q 007374 165 KEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV------------ 232 (606)
Q Consensus 165 ~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l------------ 232 (606)
+.+++.++++ +.|.++|.|+|..=++.+...+.+.... .+.+.++.++. .|+...
T Consensus 2 ~~~~~~l~~a----------~rI~~~G~G~S~~~A~~~a~~~~~~~~~--~~~g~~~~~~~-~~~~~~~~~~~d~~~~~~ 68 (154)
T TIGR00441 2 VLLADSFKAG----------GKVLICGNGGSACDAQHFAAELTGRYRE--NRPGLPAIALS-ADVSHLTCVSNDYGYEDV 68 (154)
T ss_pred hHHHHHHHCC----------CEEEEEeCcHHHHHHHHHHHHhhccccc--CCCCceEEecC-CcHHHHHHhhccCCHHHH
Confidence 4567777765 5799999999987555554333221100 12345555544 243322
Q ss_pred -HHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCCCC
Q 007374 233 -AKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWV 309 (606)
Q Consensus 233 -~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd~V 309 (606)
.+.+...-.++.++|++|.||.|.|++..++.+++ + +-.+|+||++. .+++.-. -++.+|+.-
T Consensus 69 ~~~~~~~~~~~~D~~i~iS~sG~t~~~~~~~~~a~~----~------g~~ii~iT~~~~s~l~~~ad----~~l~~~~~~ 134 (154)
T TIGR00441 69 FSRQVEALGQKGDVLLGISTSGNSKNVLKAIEAAKD----K------GMKTITLAGKDGGKMAGLAD----IELRVPHFY 134 (154)
T ss_pred HHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCCchhhhCC----EEEEeCCCC
Confidence 22223334678899999999999999999888876 1 34789999854 3444322 267777654
Q ss_pred Ccc
Q 007374 310 GGR 312 (606)
Q Consensus 310 GGR 312 (606)
-||
T Consensus 135 ~~~ 137 (154)
T TIGR00441 135 TPR 137 (154)
T ss_pred cHH
Confidence 444
No 26
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=97.60 E-value=0.0017 Score=58.78 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCC
Q 007374 163 KIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPE 242 (606)
Q Consensus 163 ~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~ 242 (606)
+++++++.+.+. +.|+++|.|.|..-.+.+...|.. -+..+.+++ +..........+ .+
T Consensus 2 ~i~~~~~~i~~~----------~~i~i~g~g~s~~~a~~~~~~l~~--------~~~~~~~~~--~~~~~~~~~~~~-~~ 60 (139)
T cd05013 2 ALEKAVDLLAKA----------RRIYIFGVGSSGLVAEYLAYKLLR--------LGKPVVLLS--DPHLQLMSAANL-TP 60 (139)
T ss_pred HHHHHHHHHHhC----------CEEEEEEcCchHHHHHHHHHHHHH--------cCCceEEec--CHHHHHHHHHcC-CC
Confidence 467778888653 679999999987666666655543 245666664 344444444444 46
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCCC
Q 007374 243 TTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 308 (606)
Q Consensus 243 ~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd~ 308 (606)
++++|++|.||.|.|++..++.+++ + +-++|+||++. .+++-- +.+|.+|..
T Consensus 61 ~~~~i~iS~~g~~~~~~~~~~~a~~----~------g~~iv~iT~~~~~~l~~~~----d~~i~~~~~ 114 (139)
T cd05013 61 GDVVIAISFSGETKETVEAAEIAKE----R------GAKVIAITDSANSPLAKLA----DIVLLVSSE 114 (139)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH----c------CCeEEEEcCCCCChhHHhc----CEEEEcCCC
Confidence 7899999999999999887776654 2 24689999865 333321 235666644
No 27
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=97.59 E-value=0.00058 Score=66.15 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCC
Q 007374 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (606)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~ 241 (606)
++++++++.+.+. +.|.++|.|+|..-++.+..-|.. -+.+++++.... ...+ .
T Consensus 18 ~~~~~~~~~l~~a----------~~I~i~G~G~S~~~A~~~~~~l~~--------~g~~~~~~~~~~-------~~~~-~ 71 (179)
T TIGR03127 18 EELDKLADKIIKA----------KRIFVAGAGRSGLVGKAFAMRLMH--------LGFNVYVVGETT-------TPSI-K 71 (179)
T ss_pred HHHHHHHHHHHhC----------CEEEEEecCHHHHHHHHHHHHHHh--------CCCeEEEeCCcc-------cCCC-C
Confidence 5678888888653 679999999997655555443332 355677764321 1233 5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCC
Q 007374 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd 307 (606)
++.++|++|+||.|.|++..++.+++ + +-.+|+||++. .+++.-. -+|.+|.
T Consensus 72 ~~Dv~I~iS~sG~t~~~i~~~~~ak~----~------g~~ii~IT~~~~s~la~~ad----~~l~~~~ 125 (179)
T TIGR03127 72 KGDLLIAISGSGETESLVTVAKKAKE----I------GATVAAITTNPESTLGKLAD----VVVEIPA 125 (179)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHH----C------CCeEEEEECCCCCchHHhCC----EEEEeCC
Confidence 67889999999999999998888765 2 34689999854 4554322 2565554
No 28
>PRK13938 phosphoheptose isomerase; Provisional
Probab=97.58 E-value=0.0012 Score=65.76 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChH------------HH
Q 007374 165 KEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPI------------DV 232 (606)
Q Consensus 165 ~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~------------~l 232 (606)
+.+.+.+++| ..|+++|.|||.+-++.+..-|.+.... +.+..+...+..-|+. .+
T Consensus 36 ~~~~~~l~~g----------~rI~i~G~G~S~~~A~~fa~~L~~~~~~--~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~ 103 (196)
T PRK13938 36 DRLIAGYRAG----------ARVFMCGNGGSAADAQHFAAELTGHLIF--DRPPLGAEALHANSSHLTAVANDYDYDTVF 103 (196)
T ss_pred HHHHHHHHCC----------CEEEEEeCcHHHHHHHHHHHHcCCCccC--CcCccceEEEeCChHHHHHhhccccHHHHH
Confidence 3444556665 4699999999987777666555421100 1112223332211211 12
Q ss_pred HHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCCCC
Q 007374 233 AKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWV 309 (606)
Q Consensus 233 ~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd~V 309 (606)
.+.+...-.+.-++|++|.||+|.|++..++.+++ + +-.+|++|++. .+++.-. -++.+|..-
T Consensus 104 ~~~~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~----~------G~~vI~iT~~~~s~La~~aD----~~l~v~~~e 168 (196)
T PRK13938 104 ARALEGSARPGDTLFAISTSGNSMSVLRAAKTARE----L------GVTVVAMTGESGGQLAEFAD----FLINVPSRD 168 (196)
T ss_pred HHHHHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCChhhhhCC----EEEEeCCCc
Confidence 34445556778889999999999999998888875 2 35789999754 4554322 256666543
No 29
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=0.0011 Score=65.87 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=70.8
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~ 265 (606)
.|||.|+|=|.+=.+.+..-|.+. +.+.+||.-.+ ..+-.+.-+.+.+ ++|.+|+||.|.|-+..+..+
T Consensus 41 kv~V~G~GkSG~Igkk~Aa~L~s~--------G~~a~fv~p~e--a~hgdlg~i~~~D-vviaiS~SGeT~el~~~~~~a 109 (202)
T COG0794 41 KVFVTGVGKSGLIGKKFAARLAST--------GTPAFFVGPAE--ALHGDLGMITPGD-VVIAISGSGETKELLNLAPKA 109 (202)
T ss_pred cEEEEcCChhHHHHHHHHHHHHcc--------CCceEEecCch--hccCCccCCCCCC-EEEEEeCCCcHHHHHHHHHHH
Confidence 499999999999998888777653 56899997222 2233366665554 678999999999999888877
Q ss_pred HHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccC
Q 007374 266 REWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFW 306 (606)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~p 306 (606)
++ .+..+|+||+++ .+|+.-.+ ++.+|
T Consensus 110 K~----------~g~~liaiT~~~~SsLak~aDv----vl~ip 138 (202)
T COG0794 110 KR----------LGAKLIAITSNPDSSLAKAADV----VLVIP 138 (202)
T ss_pred HH----------cCCcEEEEeCCCCChHHHhcCe----EEEcc
Confidence 65 245799999976 46766555 46665
No 30
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=97.49 E-value=0.0016 Score=63.04 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHH-----
Q 007374 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS----- 235 (606)
Q Consensus 161 l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~----- 235 (606)
.+++++.++.+.+-- ++-+.|+++|.|+|..-+.-+..-|...... .+.+.++++++ .|+..+...
T Consensus 16 ~~~i~~a~~~i~~~i------~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~--~~~g~~~~~~~-~~~~~~~~~~~~~~ 86 (177)
T cd05006 16 AEAIEQAAQLLAEAL------LNGGKILICGNGGSAADAQHFAAELVKRFEK--ERPGLPAIALT-TDTSILTAIANDYG 86 (177)
T ss_pred HHHHHHHHHHHHHHH------HCCCEEEEEeCcHHHHHHHHHHHHHhchhcc--CCCCCceEecc-CCHHHHHHHhccCC
Confidence 455566666553310 0125799999999987766655444321100 01234555554 233333222
Q ss_pred --------hccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeecc
Q 007374 236 --------ITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAF 305 (606)
Q Consensus 236 --------l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~ 305 (606)
+...-.++.++|++|.||.|.||+..++.+++ + +-.+|+||++. .+++.-. -++.+
T Consensus 87 ~~~~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~----~------Ga~vI~IT~~~~s~La~~aD----~~l~~ 152 (177)
T cd05006 87 YEEVFSRQVEALGQPGDVLIGISTSGNSPNVLKALEAAKE----R------GMKTIALTGRDGGKLLELAD----IEIHV 152 (177)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCCchhhhCC----EEEEe
Confidence 22223567889999999999999998888875 2 34789999753 3444322 25777
Q ss_pred CCCCCcc
Q 007374 306 WDWVGGR 312 (606)
Q Consensus 306 pd~VGGR 312 (606)
|..--+|
T Consensus 153 ~~~~~~~ 159 (177)
T cd05006 153 PSDDTPR 159 (177)
T ss_pred CCCChHH
Confidence 7654455
No 31
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=97.44 E-value=0.0014 Score=67.92 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCC
Q 007374 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (606)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~ 241 (606)
+++.++++.+.+. +.|.++|+|+|..-++-+..-|.. -+.++++. .|+......+..+++
T Consensus 116 ~~l~~~~~~i~~a----------~~I~i~G~G~s~~~A~~~~~~l~~--------~g~~~~~~--~d~~~~~~~~~~~~~ 175 (278)
T PRK11557 116 EKLHECVTMLRSA----------RRIILTGIGASGLVAQNFAWKLMK--------IGINAVAE--RDMHALLATVQALSP 175 (278)
T ss_pred HHHHHHHHHHhcC----------CeEEEEecChhHHHHHHHHHHHhh--------CCCeEEEc--CChHHHHHHHHhCCC
Confidence 5677888888653 689999999997655555544432 24455554 466666666777755
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHH
Q 007374 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVE 293 (606)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~ 293 (606)
+ .++|++|.||.|.|++..++.+++ + +-.+|+||++. .+++
T Consensus 176 ~-Dv~I~iS~sg~~~~~~~~~~~ak~----~------ga~iI~IT~~~~s~la~ 218 (278)
T PRK11557 176 D-DLLLAISYSGERRELNLAADEALR----V------GAKVLAITGFTPNALQQ 218 (278)
T ss_pred C-CEEEEEcCCCCCHHHHHHHHHHHH----c------CCCEEEEcCCCCCchHH
Confidence 4 478899999999999998888775 2 34689999864 3444
No 32
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=97.38 E-value=0.00079 Score=61.11 Aligned_cols=87 Identities=21% Similarity=0.232 Sum_probs=60.6
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~ 265 (606)
.|.++|.|+|..-.+.+...|.. -+.++.++. |+..+...+..+ .++.++|++|.||.|.|++..++.+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~~~d~vi~iS~sG~t~~~~~~~~~a 70 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSS--------TGTPAFFLH--PTEALHGDLGMV-TPGDVVIAISNSGETDELLNLLPHL 70 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhc--------CCCceEEcc--cchhhccccCcC-CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 48999999998777766655542 244555553 333344344444 5667899999999999999988887
Q ss_pred HHHHHHhcCCcccCCeEEEEcCCc--hHHH
Q 007374 266 REWISTALGPSAVAKHMVAVSTNL--TLVE 293 (606)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~--~~A~ 293 (606)
++ + +.++|+||++. .+++
T Consensus 71 ~~----~------g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 71 KR----R------GAPIIAITGNPNSTLAK 90 (128)
T ss_pred HH----C------CCeEEEEeCCCCCchhh
Confidence 65 1 35789999865 3554
No 33
>PRK15482 transcriptional regulator MurR; Provisional
Probab=97.30 E-value=0.0022 Score=66.75 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCC
Q 007374 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (606)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~ 241 (606)
++++++++.+.+ -+.|.++|+|.|..-++.+..-|.. -+.++.+.. |+.........++
T Consensus 123 ~~l~~~~~~i~~----------A~~I~i~G~G~S~~~A~~l~~~l~~--------~g~~~~~~~--d~~~~~~~~~~~~- 181 (285)
T PRK15482 123 ARLQKIIEVISK----------APFIQITGLGGSALVGRDLSFKLMK--------IGYRVACEA--DTHVQATVSQALK- 181 (285)
T ss_pred HHHHHHHHHHHh----------CCeeEEEEeChhHHHHHHHHHHHHh--------CCCeeEEec--cHhHHHHHHhcCC-
Confidence 467788888865 3679999999997655555544432 244555543 5554444445554
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCC
Q 007374 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd 307 (606)
++.++|++|.||.|.|++..++.+++ + +..+|+||++. .+++.--+ +|.++.
T Consensus 182 ~~Dv~i~iS~sg~t~~~~~~~~~a~~----~------g~~iI~IT~~~~s~la~~ad~----~l~~~~ 235 (285)
T PRK15482 182 KGDVQIAISYSGSKKEIVLCAEAARK----Q------GATVIAITSLADSPLRRLAHF----TLDTVS 235 (285)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCCchHHhCCE----EEEcCC
Confidence 55789999999999999998888865 2 35799999864 45553222 566554
No 34
>PRK13937 phosphoheptose isomerase; Provisional
Probab=97.19 E-value=0.0041 Score=61.16 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=57.5
Q ss_pred ceEEEEccccCchhHHHH-HHhhhcchhHHhhhCCceEEEeccCChHHH-------------HHHhccCCCCCEEEEEEc
Q 007374 185 KDVVAVGIGGSFLGPLFV-HTALQTDLEAIECARGRQLRFLANVDPIDV-------------AKSITGLNPETTLVVVVS 250 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~-~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l-------------~~~l~~ld~~~TL~iviS 250 (606)
..|.++|.|+|..-++.+ .++...+.. .+.+.+...+. .|+..+ ...+...-.++.++|++|
T Consensus 39 ~rI~i~G~G~S~~~A~~~a~~~~~~~~~---~r~g~~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dl~i~iS 114 (188)
T PRK13937 39 GKILLCGNGGSAADAQHIAAELVGRFKK---ERPALPAIALT-TDTSALTAIGNDYGFERVFSRQVEALGRPGDVLIGIS 114 (188)
T ss_pred CEEEEEeCcHhHHHHHHHHHHhhccccC---CCCCcceEecc-CcHHHHHHHhccCCHHHHHHHHHHhhCCCCCEEEEEe
Confidence 579999999997544433 233322110 01234444442 233221 222322336678999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHH
Q 007374 251 KTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVE 293 (606)
Q Consensus 251 KSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~ 293 (606)
.||.|.|++..++.+++ + +-.+|+||++. .+++
T Consensus 115 ~sG~t~~~~~~~~~ak~----~------g~~~I~iT~~~~s~L~~ 149 (188)
T PRK13937 115 TSGNSPNVLAALEKARE----L------GMKTIGLTGRDGGKMKE 149 (188)
T ss_pred CCCCcHHHHHHHHHHHH----C------CCeEEEEeCCCCChhHH
Confidence 99999999998888875 2 34689999854 3444
No 35
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=97.17 E-value=0.0052 Score=60.78 Aligned_cols=105 Identities=11% Similarity=0.161 Sum_probs=66.8
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHH-------------HHHhccCCCCCEEEEEEcC
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-------------AKSITGLNPETTLVVVVSK 251 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l-------------~~~l~~ld~~~TL~iviSK 251 (606)
..|.++|.|+|..=++.+..-|.+.... .+.+.++..+ .|+..+ .+....+..+..++|++|.
T Consensus 45 ~rI~i~G~G~S~~~A~~~a~~l~~~~~~--~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dv~I~iS~ 120 (192)
T PRK00414 45 GKVLSCGNGGSHCDAMHFAEELTGRYRE--NRPGYPAIAI--SDVSHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGIST 120 (192)
T ss_pred CEEEEEeCcHHHHHHHHHHHHhcccccC--CCCCceEEec--CcHHHHhhhhccCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 4699999999987555555434321100 1234455555 355332 3334455578889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCC
Q 007374 252 TFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 252 SGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd 307 (606)
||.|.+++..++.+++ + +-.+|+||.+. .+++.-.+ ++.+|.
T Consensus 121 SG~t~~~i~~~~~ak~----~------g~~iI~iT~~~~s~l~~~ad~----~l~~~~ 164 (192)
T PRK00414 121 SGNSGNIIKAIEAARA----K------GMKVITLTGKDGGKMAGLADI----EIRVPH 164 (192)
T ss_pred CCCCHHHHHHHHHHHH----C------CCeEEEEeCCCCChhHHhCCE----EEEeCC
Confidence 9999999998888875 2 34789999854 45553222 566665
No 36
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=97.16 E-value=0.0054 Score=70.66 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=61.6
Q ss_pred ccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 183 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 183 ~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
..+.|+++|+|+|+.....+...+... .+..+.+.. +..+...... ..+++++|++|.||+|.||+..+
T Consensus 288 ~a~~I~~~G~GsS~~aa~~a~~~~~~~-------~~~~~~~~~---~~~~~~~~~~-~~~~dlvI~iS~SG~T~e~i~a~ 356 (604)
T PRK00331 288 KIDRIYIVACGTSYHAGLVAKYLIESL-------AGIPVEVEI---ASEFRYRDPV-LSPKTLVIAISQSGETADTLAAL 356 (604)
T ss_pred cCCEEEEEEeecHHHHHHHHHHHHHHH-------cCCCEEEEe---hhhhhccCCC-CCCCeEEEEEcCCCCCHHHHHHH
Confidence 367899999999987766666655432 233444332 2233222223 36789999999999999999988
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 263 RTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
+.+++ + +-++|+||.+. .+++.
T Consensus 357 ~~ak~----~------ga~~IaIT~~~~S~La~~ 380 (604)
T PRK00331 357 RLAKE----L------GAKTLAICNVPGSTIARE 380 (604)
T ss_pred HHHHH----C------CCCEEEEECCCCChhHHh
Confidence 88875 1 24689999854 45554
No 37
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=97.14 E-value=0.0039 Score=65.19 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=103.6
Q ss_pred HHhhc-CChhhhhhhhcccCCeEEeccc-CcCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCC
Q 007374 66 LRDLM-SDTDRCQSMMVEFDGILLDYSR-QNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRD 143 (606)
Q Consensus 66 l~~lf-~d~~R~~~~~~~~~gl~lD~Sk-~~i~~~~l~~l~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~ 143 (606)
+.+.+ ++|+....+++. |.++ -.|++.|+-.|+...-=.|+++-...+-..- . . ..+..+|. ...+.+
T Consensus 23 iA~yil~~~~~~~~~si~------elA~~a~VS~aTv~Rf~~kLGf~Gf~efk~~l~~~l-~-~-~~~~~~~~-~~~~~~ 92 (281)
T COG1737 23 IADYILANPDEVALLSIA------ELAERAGVSPATVVRFARKLGFEGFSEFKLALAQEL-A-E-GRAQLLRE-IAEDDG 92 (281)
T ss_pred HHHHHHhCHHHHHHHHHH------HHHHHhCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-h-h-ccchhhcc-cCCCCC
Confidence 44444 566666665542 2222 2577888777776666666655544443210 0 0 02223332 111111
Q ss_pred cc-c----ccCCCcchHHHHH--HHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhh
Q 007374 144 AA-I----NSDGKNVVPEVWK--VLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECA 216 (606)
Q Consensus 144 ~~-~----~~~g~~~~~~~~~--~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~ 216 (606)
.. + ............. ..+++.+.++.+.+ -+.|+++|.|.|..-+.-+...|..
T Consensus 93 ~~~~~~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~~----------A~rI~~~G~g~S~~vA~~~~~~l~~-------- 154 (281)
T COG1737 93 PESILEKLLAANIAALERTLNLLDEEALERAVELLAK----------ARRIYFFGLGSSGLVASDLAYKLMR-------- 154 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHc----------CCeEEEEEechhHHHHHHHHHHHHH--------
Confidence 00 0 0000000111111 12456777787765 3689999988775544444433332
Q ss_pred CCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 217 RGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 217 ~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
-+.++..++ |+......+..++ ++.++|++|.||.|.|++..++.+++ + +..+|+||+.. .+++.
T Consensus 155 ig~~~~~~~--d~~~~~~~~~~~~-~~Dv~i~iS~sG~t~e~i~~a~~ak~----~------ga~vIaiT~~~~spla~~ 221 (281)
T COG1737 155 IGLNVVALS--DTHGQLMQLALLT-PGDVVIAISFSGYTREIVEAAELAKE----R------GAKVIAITDSADSPLAKL 221 (281)
T ss_pred cCCceeEec--chHHHHHHHHhCC-CCCEEEEEeCCCCcHHHHHHHHHHHH----C------CCcEEEEcCCCCCchhhh
Confidence 345667775 5555545666664 45678899999999999999998876 1 35789999863 34443
No 38
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=97.13 E-value=0.0021 Score=75.20 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=61.9
Q ss_pred ccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 183 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 183 ~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
++++|+++|.|+|+.....+..++... .+.++.... +.++...-..+. +++++|++|.||+|.||+..+
T Consensus 362 ~~~~I~~~G~GsS~~aa~~a~~~l~kl-------~~i~v~~~~---~sef~~~~~~~~-~~~lvI~ISqSGeT~eti~Al 430 (680)
T PLN02981 362 RSRRIVFIGCGTSYNAALAARPILEEL-------SGVPVTMEL---ASDLLDRQGPIY-REDTAVFVSQSGETADTLRAL 430 (680)
T ss_pred cCCEEEEEEecHHHHHHHHHHHHHHHH-------hCCCEEEec---chHHHhccccCC-CCCeEEEEeCCcCCHHHHHHH
Confidence 368899999999999888877776543 234443332 223322222333 477888999999999999998
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 263 RTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
+.+++ + +.+.|+||.+. .+++.
T Consensus 431 ~~Ak~----~------Ga~~IaITn~~~S~La~~ 454 (680)
T PLN02981 431 EYAKE----N------GALCVGITNTVGSAISRG 454 (680)
T ss_pred HHHHH----C------CCcEEEEECCCCChhHhc
Confidence 88875 1 24689999764 45544
No 39
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=97.13 E-value=0.015 Score=60.79 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCC
Q 007374 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (606)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~ 241 (606)
+.+.++++.+.+ -+.|.++|+|+|..-++-+..-|. .-+.++.++. |..........+ .
T Consensus 128 ~~l~~~~~~i~~----------A~~I~i~G~G~S~~~A~~l~~~l~--------~~g~~~~~~~--d~~~~~~~~~~~-~ 186 (292)
T PRK11337 128 DEFHRAARFFYQ----------ARQRDLYGAGGSAAIARDVQHKFL--------RIGVRCQAYD--DAHIMLMSAALL-Q 186 (292)
T ss_pred HHHHHHHHHHHc----------CCeEEEEEecHHHHHHHHHHHHHh--------hCCCeEEEcC--CHHHHHHHHhcC-C
Confidence 567777888865 367899999999655444443332 1345666664 444444334444 4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCCC
Q 007374 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 308 (606)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd~ 308 (606)
++.++|++|.||.|.|++..++.+++ + +.++|+||++. .+++.-. -+|.+|..
T Consensus 187 ~~Dl~I~iS~sG~t~~~~~~~~~ak~----~------g~~ii~IT~~~~s~la~~ad----~~l~~~~~ 241 (292)
T PRK11337 187 EGDVVLVVSHSGRTSDVIEAVELAKK----N------GAKIICITNSYHSPIAKLAD----YVICSTAQ 241 (292)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEeCCCCChhHHhCC----EEEEcCCC
Confidence 56778999999999999988888765 2 35799999864 4555322 25666643
No 40
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=97.12 E-value=0.0072 Score=60.13 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=68.0
Q ss_pred ceEEEEccccCchhHHHHHHhh-hcchhHHhhhCCceEEEeccCChHH-------------HHHHhccCCCCCEEEEEEc
Q 007374 185 KDVVAVGIGGSFLGPLFVHTAL-QTDLEAIECARGRQLRFLANVDPID-------------VAKSITGLNPETTLVVVVS 250 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL-~~~~~~~~~~~~~~i~fl~nvDp~~-------------l~~~l~~ld~~~TL~iviS 250 (606)
..|.++|.|||+.-++-+..-| .++.. .+.+++...+. .|... +.+.++..-.+.-+++++|
T Consensus 42 ~rI~~~G~GgSa~~A~~~a~~l~~~~~~---~r~gl~a~~l~-~d~~~~ta~and~~~~~~f~~ql~~~~~~gDvli~iS 117 (196)
T PRK10886 42 NKILCCGNGTSAANAQHFAASMINRFET---ERPSLPAIALN-TDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAIS 117 (196)
T ss_pred CEEEEEECcHHHHHHHHHHHHHhccccc---cCCCcceEEec-CcHHHHHHHhccccHHHHHHHHHHHcCCCCCEEEEEe
Confidence 5799999999977666555444 22211 12344555442 23222 2344455567778888899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCCCC
Q 007374 251 KTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWV 309 (606)
Q Consensus 251 KSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd~V 309 (606)
.||+|.+.+..++.+++ + +-.+|+||.+. .+++-.+. .+-.+.+|..-
T Consensus 118 ~SG~s~~v~~a~~~Ak~----~------G~~vI~IT~~~~s~l~~l~~~-~D~~i~ip~~~ 167 (196)
T PRK10886 118 TRGNSRDIVKAVEAAVT----R------DMTIVALTGYDGGELAGLLGP-QDVEIRIPSHR 167 (196)
T ss_pred CCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCChhhhcccc-CCEEEEcCCCc
Confidence 99999999988888875 2 34689999754 34442211 12367777543
No 41
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=97.09 E-value=0.0034 Score=52.72 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=55.9
Q ss_pred EEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHH-hccCCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 007374 187 VVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS-ITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (606)
Q Consensus 187 VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~-l~~ld~~~TL~iviSKSGtT~ETl~n~~~~ 265 (606)
|+++|.|+|..-...+...|... .+.++.++.. +...... +.. ..++.+++++|+||+|.|+...++.+
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~-------~~~~~~~~~~--~~~~~~~~~~~-~~~~d~~i~iS~sg~t~~~~~~~~~a 70 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLEL-------TGIEVVALIA--TELEHASLLSL-LRKGDVVIALSYSGRTEELLAALEIA 70 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcc-------cCCceEEeCC--cHHHHHHHHhc-CCCCCEEEEEECCCCCHHHHHHHHHH
Confidence 57899999988777777666542 1456666643 2222222 333 36889999999999999999888877
Q ss_pred HHHHHHhcCCcccCCeEEEEc
Q 007374 266 REWISTALGPSAVAKHMVAVS 286 (606)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT 286 (606)
++ + +..+|+||
T Consensus 71 ~~----~------g~~ii~it 81 (87)
T cd04795 71 KE----L------GIPVIAIT 81 (87)
T ss_pred HH----c------CCeEEEEe
Confidence 65 2 24688888
No 42
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.09 E-value=0.0033 Score=66.40 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCC
Q 007374 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (606)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~ 241 (606)
+++.+.++.+.+. -+.|.+.|.|+|+.-++-+..-|.. -+.+.++++ |+..+......+ .
T Consensus 29 ~~~~~~~~~l~~~---------~~~I~i~G~G~S~~~A~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~ 88 (321)
T PRK11543 29 DDFVRAANIILHC---------EGKVVVSGIGKSGHIGKKIAATLAS--------TGTPAFFVH--PAEALHGDLGMI-E 88 (321)
T ss_pred HHHHHHHHHHHhc---------CCcEEEEecChhHHHHHHHHHHHHc--------CCCceeecC--hHHHhhCCcCcc-C
Confidence 3566677777542 1479999999998777666555542 245566664 343333333344 5
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
++.++|++|.||.|.|++..++.+++ + +-.+|+||++. .+++.
T Consensus 89 ~~d~~i~iS~sG~t~~~~~~~~~ak~----~------g~~vI~iT~~~~s~la~~ 133 (321)
T PRK11543 89 SRDVMLFISYSGGAKELDLIIPRLED----K------SIALLAMTGKPTSPLGLA 133 (321)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHH----c------CCeEEEEECCCCChhHHh
Confidence 67889999999999999999888875 2 34689999854 45554
No 43
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=97.08 E-value=0.0055 Score=70.68 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=61.5
Q ss_pred ccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 183 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 183 ~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
+.+.|+++|+|+|+.....+...+... .+..+.++. +..+...... ..+++++|++|.||.|.||+..+
T Consensus 290 ~~~~I~~~G~GsS~~aa~~a~~~~~~~-------~~i~~~~~~---~~~~~~~~~~-~~~~dlvI~iS~SG~T~e~v~a~ 358 (607)
T TIGR01135 290 NVDRIQIVACGTSYHAGLVAKYLIERL-------AGIPVEVEI---ASEFRYRKPV-VDKDTLVIAISQSGETADTLAAL 358 (607)
T ss_pred cCCEEEEEEeechHHHHHHHHHHHHHh-------cCCCEEEec---HHHHhhcCCC-CCCCCEEEEEeCCCCCHHHHHHH
Confidence 468899999999977666655554432 234444432 3333332233 36889999999999999999988
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 263 RTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
+.+++ + +-.+|+||.+. .+++.
T Consensus 359 ~~ak~----~------ga~~IaIT~~~~S~La~~ 382 (607)
T TIGR01135 359 RLAKE----L------GAKTLGICNVPGSTLVRE 382 (607)
T ss_pred HHHHH----c------CCcEEEEECCCCChHHhh
Confidence 88875 2 24689999864 45554
No 44
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=97.02 E-value=0.0037 Score=56.46 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=64.3
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHH
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNART 264 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~ 264 (606)
++|+++|.|.|.--++.+...|... .+....+.+ ........+..+ .+++++|++|.||.|.|++..++.
T Consensus 6 ~~i~i~G~G~s~~~A~~~~~~l~~~-------~~~~~~~~~--~~~~~~~~~~~~-~~~d~vi~is~sg~~~~~~~~~~~ 75 (131)
T PF01380_consen 6 KRIYIYGSGSSYGVAQYAALKLQKL-------GRIVVISYE--AGEFFHGPLENL-DPDDLVIIISYSGETRELIELLRF 75 (131)
T ss_dssp SEEEEEESTHHHHHHHHHHHHHHHH-------HSSEEEEEE--HHHHHTTGGGGC-STTEEEEEEESSSTTHHHHHHHHH
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHh-------cCcceeccc--hHHHhhhhcccc-cccceeEeeeccccchhhhhhhHH
Confidence 6899999999976555555444322 122223322 222345546666 467899999999999999988887
Q ss_pred HHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccCCC
Q 007374 265 LREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 308 (606)
Q Consensus 265 ~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~pd~ 308 (606)
+++ + +..+|+||++. .+++.- +.+|.+|..
T Consensus 76 ak~----~------g~~vi~iT~~~~~~l~~~a----d~~l~~~~~ 107 (131)
T PF01380_consen 76 AKE----R------GAPVILITSNSESPLARLA----DIVLYIPTG 107 (131)
T ss_dssp HHH----T------TSEEEEEESSTTSHHHHHS----SEEEEEESS
T ss_pred HHh----c------CCeEEEEeCCCCCchhhhC----CEEEEecCC
Confidence 664 2 34689999754 455443 346766644
No 45
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=97.01 E-value=0.0021 Score=74.59 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=62.7
Q ss_pred ccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 183 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 183 ~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
+++.|+++|.|+|+.....+...|... .+.....+ ..+..+... . ...+++++|++|.||.|.||+..+
T Consensus 321 ~~~~I~i~g~GsS~~aa~~~~~~l~~~-------~~~~~v~~--~~~s~~~~~-~-~~~~~~lvI~ISqSGeT~d~i~al 389 (640)
T PTZ00295 321 NIKNLILVGCGTSYYAALFAASIMQKL-------KCFNTVQV--IDASELTLY-R-LPDEDAGVIFISQSGETLDVVRAL 389 (640)
T ss_pred cCCEEEEEEeehHHHHHHHHHHHHHHh-------CCCCceEE--echHHhhhh-c-cCCCCCEEEEEeCCCCcHHHHHHH
Confidence 468899999999999888887766542 12211112 233444322 2 234688999999999999999998
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHc
Q 007374 263 RTLREWISTALGPSAVAKHMVAVSTNL--TLVEKF 295 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~ 295 (606)
+.+++ + +-..|+||.+. .+++.-
T Consensus 390 ~~ak~----~------Ga~~IaITn~~~S~La~~a 414 (640)
T PTZ00295 390 NLADE----L------NLPKISVVNTVGSLIARST 414 (640)
T ss_pred HHHHH----C------CCCEEEEECCCCChhHHhc
Confidence 88875 1 24689999754 456553
No 46
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=96.96 E-value=0.0087 Score=61.96 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCC
Q 007374 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (606)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~ 241 (606)
+.+.++++.+.+ -+.|.++|.|+|..-+..+..-|.. .+.++...+ |..........+ .
T Consensus 116 ~~i~~~~~~i~~----------a~~I~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~ 174 (284)
T PRK11302 116 SAINRAVDLLTQ----------AKKISFFGLGASAAVAHDAQNKFFR--------FNVPVVYFD--DIVMQRMSCMNS-S 174 (284)
T ss_pred HHHHHHHHHHHc----------CCeEEEEEcchHHHHHHHHHHHHHh--------cCCceEecC--CHHHHHHHHHhC-C
Confidence 567788888865 3679999999997655443332321 234444443 332222223334 4
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCC
Q 007374 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN 288 (606)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~ 288 (606)
++.++|++|.||.|.|++..++.+++ + +-++|+||++
T Consensus 175 ~~D~vI~iS~sG~t~~~~~~~~~ak~----~------g~~vI~IT~~ 211 (284)
T PRK11302 175 DGDVVVLISHTGRTKSLVELAQLARE----N------GATVIAITSA 211 (284)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH----c------CCeEEEECCC
Confidence 56788899999999999998888775 2 3579999974
No 47
>PRK13936 phosphoheptose isomerase; Provisional
Probab=96.77 E-value=0.019 Score=56.97 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhh-cchhHHhhhCCceEEEeccCChHHH---------
Q 007374 163 KIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQ-TDLEAIECARGRQLRFLANVDPIDV--------- 232 (606)
Q Consensus 163 ~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~-~~~~~~~~~~~~~i~fl~nvDp~~l--------- 232 (606)
.++.+++.++++ +.|.++|.|||..-++-+..-|. .... .+.+.+...+ +.|+...
T Consensus 32 a~~~~~~~l~~a----------~~I~i~G~G~S~~~A~~~~~~l~~r~~~---~r~g~~~~~~-~~~~~~~~~~~~d~~~ 97 (197)
T PRK13936 32 AVELMVQALLNE----------GKILACGNGGSAADAQHFSAELLNRFER---ERPSLPAIAL-TTDTSTLTAIANDYSY 97 (197)
T ss_pred HHHHHHHHHHCC----------CEEEEEeCcHhHHHHHHHHHHccCccCC---CCccceeEec-CCcHHHHHHHhhcCCH
Confidence 345556666665 57999999999865554443332 2210 0123333333 2233221
Q ss_pred H----HHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHcCCCCCCeeccC
Q 007374 233 A----KSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFW 306 (606)
Q Consensus 233 ~----~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~Gi~~~~~f~~p 306 (606)
. +.+.....++-++|++|.||.|.|++..++.+++ + +-.+|+||++. .+++ ..-..+-++.+|
T Consensus 98 ~~~~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~----~------g~~iI~IT~~~~s~l~~-l~~~ad~~l~v~ 166 (197)
T PRK13936 98 NEVFSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHE----R------EMHVVALTGRDGGKMAS-LLLPEDVEIRVP 166 (197)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHH----C------CCeEEEEECCCCChhhh-hhccCCEEEEeC
Confidence 1 2223334567788889999999999998888875 1 35789999854 3333 100112357776
Q ss_pred CCC
Q 007374 307 DWV 309 (606)
Q Consensus 307 d~V 309 (606)
..-
T Consensus 167 ~~~ 169 (197)
T PRK13936 167 AER 169 (197)
T ss_pred CCc
Confidence 643
No 48
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.69 E-value=0.018 Score=61.00 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCC
Q 007374 163 KIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPE 242 (606)
Q Consensus 163 ~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~ 242 (606)
.+++.++.+.+. -+.|.++|.|.|+.-.+.+..-|.. -+.++.++. ++.........+ .+
T Consensus 35 ~l~~~~~~l~~a---------~~~I~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~~ 94 (326)
T PRK10892 35 DFTLACEKMFWC---------KGKVVVMGMGKSGHIGRKMAATFAS--------TGTPSFFVH--PGEAAHGDLGMV-TP 94 (326)
T ss_pred HHHHHHHHHHhc---------CCeEEEEeCcHhHHHHHHHHHHHhc--------CCceeEEeC--hHHhhccccccC-CC
Confidence 377777777542 1469999999998776666554442 345666653 222222223444 45
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHH
Q 007374 243 TTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVE 293 (606)
Q Consensus 243 ~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~ 293 (606)
+.++|++|.||.|.|++..++.+++ + +-.+|+||++. .+++
T Consensus 95 ~d~~I~iS~sG~t~~~~~~~~~ak~----~------g~~vi~iT~~~~s~la~ 137 (326)
T PRK10892 95 QDVVIAISNSGESSEILALIPVLKR----L------HVPLICITGRPESSMAR 137 (326)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH----C------CCcEEEEECCCCCcccc
Confidence 6799999999999999998888875 1 34689999864 3444
No 49
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=96.60 E-value=0.0061 Score=71.22 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=62.0
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHH
Q 007374 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (606)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~ 263 (606)
++.|+++|.|+|+.....+..++... .+..+.+. .+.++...... ..+++++|++|.||+|.||+..++
T Consensus 354 a~rI~ivG~GtS~~aa~~ak~~~~kl-------~~i~v~v~---~asef~~~~~~-~~~~dlvI~ISqSGeT~dtl~Al~ 422 (670)
T PTZ00394 354 SRRILFIACGTSLNSCLAVRPLFEEL-------VPLPISVE---NASDFLDRRPR-IQRDDVCFFVSQSGETADTLMALQ 422 (670)
T ss_pred CCEEEEEEechHHHHHHHHHHHHHHh-------cCCCEEEe---ccchhhhhccC-CCCCCEEEEEECCcCcHHHHHHHH
Confidence 57899999999997777666555532 12333322 22333322223 367899999999999999999988
Q ss_pred HHHHHHHHhcCCcccCCeEEEEcCCc--hHHHHc
Q 007374 264 TLREWISTALGPSAVAKHMVAVSTNL--TLVEKF 295 (606)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~~ 295 (606)
.+++ + +.+.|+||.+. .+++.-
T Consensus 423 ~Ak~----~------Ga~tIaITn~~~S~La~~A 446 (670)
T PTZ00394 423 LCKE----A------GAMCVGITNVVGSSISRLT 446 (670)
T ss_pred HHHH----C------CCcEEEEECCCCCHHHHhc
Confidence 8875 1 24689999754 455543
No 50
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=96.36 E-value=0.04 Score=57.04 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
.++.++|++|.||.|.+++..++.+++ + +..+|+||.+. .+++.
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~~I~It~~~~s~L~~~ 162 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARA----R------GALTIGIACNPGSPLLQL 162 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEECCCCChhHHh
Confidence 466677999999999999999888875 1 34689999865 34443
No 51
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.16 E-value=0.038 Score=64.26 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCC
Q 007374 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (606)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~ 241 (606)
+.++++++.+.+ -+.|.++|+|.|..-...+..-|.. -+.++.... |..........++
T Consensus 456 ~~l~~aa~~L~~----------a~rI~i~G~G~S~~~A~~~~~~l~~--------lg~~~~~~~--d~~~~~~~~~~l~- 514 (638)
T PRK14101 456 EHVEQAIDILNN----------ARRIEFYGLGNSNIVAQDAHYKFFR--------FGIPTIAYG--DLYMQAASAALLG- 514 (638)
T ss_pred HHHHHHHHHHhc----------CCEEEEEEccHHHHHHHHHHHHHhc--------CCceEEEcC--CHHHHHHHHhcCC-
Confidence 456677877765 3679999999997665555443321 234444443 5444444445554
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc-hHHH
Q 007374 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL-TLVE 293 (606)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-~~A~ 293 (606)
++.++|++|.||.|.|++..++.+++ + +-.+|+||+.. .+++
T Consensus 515 ~~DvvI~iS~sG~t~e~i~~~~~Ak~----~------Ga~vIaIT~~~spLa~ 557 (638)
T PRK14101 515 KGDVIVAVSKSGRAPELLRVLDVAMQ----A------GAKVIAITSSNTPLAK 557 (638)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEcCCCChhHh
Confidence 55678889999999999998888875 2 34789999853 3444
No 52
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.16 E-value=0.066 Score=56.60 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc
Q 007374 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL 289 (606)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~ 289 (606)
.++.++|++|.||.|.+++..++.+++ . +-..|+||.+.
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~~IaIT~~~ 164 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQ----I------GATTIALSCNP 164 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEECCC
Confidence 467888999999999999998888875 1 34679999754
No 53
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.08 E-value=0.029 Score=57.47 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=57.4
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~ 265 (606)
.|.+.|.|+|..-++-+..-|.. -+.++.+++ |..........+ .++.++|++|.||.|.|++..++.+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~~~d~~i~iS~sG~t~~~~~~~~~a 70 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAS--------TGTPSFFLH--PTEAMHGDLGMV-EPNDVVLMISYSGESLELLNLIPHL 70 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHh--------cCCceEEeC--HhHHhhcccCCC-CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 38899999997655555443331 245666664 222222222333 5678999999999999999998888
Q ss_pred HHHHHHhcCCcccCCeEEEEcCCc--hHHH
Q 007374 266 REWISTALGPSAVAKHMVAVSTNL--TLVE 293 (606)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~--~~A~ 293 (606)
++ + +-.+|+||++. .+++
T Consensus 71 ~~----~------g~~ii~iT~~~~s~l~~ 90 (268)
T TIGR00393 71 KR----L------SHKIIAFTGSPNSSLAR 90 (268)
T ss_pred HH----c------CCcEEEEECCCCCcccc
Confidence 76 1 24689999854 3444
No 54
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=95.86 E-value=0.093 Score=55.57 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=31.6
Q ss_pred CCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc
Q 007374 239 LNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL 289 (606)
Q Consensus 239 ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~ 289 (606)
+. ++.++|++|.||+|.+++..++.+++ .+...|+||.+.
T Consensus 129 l~-~~DvvI~IS~SG~T~~vi~al~~Ak~----------~Ga~tI~IT~~~ 168 (299)
T PRK05441 129 LT-AKDVVVGIAASGRTPYVIGALEYARE----------RGALTIGISCNP 168 (299)
T ss_pred CC-CCCEEEEEeCCCCCHHHHHHHHHHHH----------CCCeEEEEECCC
Confidence 44 55678888999999999998888875 134789999865
No 55
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=95.84 E-value=0.037 Score=51.39 Aligned_cols=111 Identities=13% Similarity=0.116 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHH-HhccCCC
Q 007374 163 KIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAK-SITGLNP 241 (606)
Q Consensus 163 ~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~-~l~~ld~ 241 (606)
+++++++.+.+ .++|+++|.|+|+.-..-...-+... ...+... .+..++.. -...+ .
T Consensus 2 ~~~~~a~~~~~----------~~~i~~~G~G~s~~~a~e~~~kl~e~-------~~i~~~~---~~~~e~~hg~~~~~-~ 60 (153)
T cd05009 2 DIKELAEKLKE----------AKSFYVLGRGPNYGTALEGALKLKET-------SYIHAEA---YSAGEFKHGPIALV-D 60 (153)
T ss_pred hHHHHHHHHhc----------cCcEEEEcCCCCHHHHHHHHHHHHHH-------Hhhccee---ccHHHhccChhhhc-c
Confidence 45667777764 57899999999975554443333211 1122222 23333332 23334 4
Q ss_pred CCEEEEEEcCCCCCHH-HHHHHHHHHHHHHHhcCCcccCCeEEEEcCCchHHHHcCCCCCCeeccCCC
Q 007374 242 ETTLVVVVSKTFTTAE-TMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDW 308 (606)
Q Consensus 242 ~~TL~iviSKSGtT~E-Tl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~A~~~Gi~~~~~f~~pd~ 308 (606)
+++++|++|.||.|.| +...++.++ +. +.++++||++.+- .+. .+..+.+|..
T Consensus 61 ~~~~vi~is~~g~t~~~~~~~~~~~~----~~------~~~vi~it~~~~s-~~~---~d~~i~~~~~ 114 (153)
T cd05009 61 EGTPVIFLAPEDRLEEKLESLIKEVK----AR------GAKVIVITDDGDA-KDL---ADVVIRVPAT 114 (153)
T ss_pred CCCcEEEEecCChhHHHHHHHHHHHH----Hc------CCEEEEEecCCcc-ccc---CCeEEECCCC
Confidence 5778888999998766 554444443 32 3578999986533 111 1235666654
No 56
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=95.42 E-value=0.14 Score=53.97 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
.++-++|++|.||.|.+++..++.+++ + +...|+||.+. .+++.
T Consensus 125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~tIaIT~~~~s~La~~ 170 (291)
T TIGR00274 125 TKNDVVVGIAASGRTPYVIAGLQYARS----L------GALTISIACNPKSAASEI 170 (291)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHH----C------CCeEEEEECCCCChhHHh
Confidence 356788889999999999998888875 1 34789999865 34443
No 57
>PRK02947 hypothetical protein; Provisional
Probab=94.98 E-value=0.18 Score=51.85 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc
Q 007374 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL 289 (606)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~ 289 (606)
.++-++|++|.||.|.|++..++.+++ + +-.+|+||++.
T Consensus 105 ~~~Dv~i~iS~sG~t~~~i~~~~~a~~----~------g~~vI~iT~~~ 143 (246)
T PRK02947 105 RPGDVLIVVSNSGRNPVPIEMALEAKE----R------GAKVIAVTSLA 143 (246)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCEEEEEcCCc
Confidence 456788999999999999988887765 2 34689999864
No 58
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=94.39 E-value=0.12 Score=59.08 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=62.2
Q ss_pred CccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHH
Q 007374 182 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 261 (606)
Q Consensus 182 ~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n 261 (606)
+.+++|.+++.|-|+-+.-+....+... .+.++.+-- +.++..--..+.+ +||+|.||.||.|.-|+.+
T Consensus 281 ~~~~rI~IvAcGTSYhAglv~ky~~E~l-------a~ipv~Ve~---aSEfry~~~~~~~-~~L~I~ISQSGETaDTl~A 349 (597)
T COG0449 281 REVDRIIIVACGTSYHAGLVAKYFFERL-------AKIPVEVEE---ASEFRYREPALNP-NTLVIAISQSGETADTLAA 349 (597)
T ss_pred cccceEEEEECcHHHHHHHHHHHHHHHH-------hCCCeEEEe---echhhhhccCCCC-CcEEEEEccCcccHHHHHH
Confidence 3589999999999998887776666543 233433321 1222222233444 4999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEcCCc--hHHHH
Q 007374 262 ARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (606)
Q Consensus 262 ~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~A~~ 294 (606)
.+.+++ . +...++||.-. .++++
T Consensus 350 Lr~ak~----~------G~~tlaItNv~gSti~Re 374 (597)
T COG0449 350 LRLAKE----Q------GAKTLAITNVPGSTIARE 374 (597)
T ss_pred HHHHHH----c------CCCEEEEEecCCChhhcc
Confidence 998875 1 24678888633 45555
No 59
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=92.39 E-value=0.96 Score=42.14 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCccccCCCccceEEEEccccCch-hHHHHHHhhhcchhHHhhhCCceEEEecc-----------CChHHH
Q 007374 165 KEFSETIRSGSWVGATGKVLKDVVAVGIGGSFL-GPLFVHTALQTDLEAIECARGRQLRFLAN-----------VDPIDV 232 (606)
Q Consensus 165 ~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~L-Gp~~~~~aL~~~~~~~~~~~~~~i~fl~n-----------vDp~~l 232 (606)
+.+++.+++| ..|.++|-|||.. +..++.++...... .....+...+.+ .|+..-
T Consensus 26 ~~i~~~~~~g----------g~i~~~G~G~S~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 92 (138)
T PF13580_consen 26 DLIAEALRNG----------GRIFVCGNGHSAAIASHFAADLGGLFGV---NRILLPAIALNDDALTAISNDLEYDEGFA 92 (138)
T ss_dssp HHHHHHHHTT------------EEEEESTHHHHHHHHHHHHHHCHSSS---TSSS-SEEETTSTHHHHHHHHTTGGGTHH
T ss_pred HHHHHHHHCC----------CEEEEEcCchhhhHHHHHHHHHhcCcCC---CcccccccccccchHhhhhcccchhhHHH
Confidence 3445556665 3599999999964 34566665543211 011122222221 122333
Q ss_pred HHHhcc--CCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcC
Q 007374 233 AKSITG--LNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVST 287 (606)
Q Consensus 233 ~~~l~~--ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~ 287 (606)
..++.. +.|.+. +|++|-||+|.=++..++.+++ + +-.+|+||+
T Consensus 93 ~~~~~~~~~~~gDv-li~iS~SG~s~~vi~a~~~Ak~----~------G~~vIalTg 138 (138)
T PF13580_consen 93 RQLLALYDIRPGDV-LIVISNSGNSPNVIEAAEEAKE----R------GMKVIALTG 138 (138)
T ss_dssp HHHHHHTT--TT-E-EEEEESSS-SHHHHHHHHHHHH----T------T-EEEEEEE
T ss_pred HHHHHHcCCCCCCE-EEEECCCCCCHHHHHHHHHHHH----C------CCEEEEEeC
Confidence 444444 556554 5678899999999988888875 2 245788874
No 60
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=87.47 E-value=12 Score=36.57 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=62.8
Q ss_pred HHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHH-------------H
Q 007374 166 EFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPID-------------V 232 (606)
Q Consensus 166 ~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~-------------l 232 (606)
.+++.+.+| ..|+.+|-|||+--++-+..=|-+.+. .++++.+-.-++ +|+.. +
T Consensus 33 ~i~~~l~~G----------~Kvl~cGNGgSaadAqHfaael~gRf~--~eR~~lpaIaLt-~dsS~lTai~NDy~yd~vF 99 (176)
T COG0279 33 LLVQSLLNG----------NKVLACGNGGSAADAQHFAAELTGRFE--KERPSLPAIALS-TDSSVLTAIANDYGYDEVF 99 (176)
T ss_pred HHHHHHHcC----------CEEEEECCCcchhhHHHHHHHHhhHHH--hcCCCCCeeEee-cccHHHhhhhccccHHHHH
Confidence 345556665 359999999998766555544433322 123444444443 34433 2
Q ss_pred HHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCC
Q 007374 233 AKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN 288 (606)
Q Consensus 233 ~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~ 288 (606)
.+.++.+-.+--+++-+|-||+..-.+.+++.+++ ..-+.|+.|.+
T Consensus 100 sRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~----------~gm~vI~ltG~ 145 (176)
T COG0279 100 SRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKE----------KGMTVIALTGK 145 (176)
T ss_pred HHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHH----------cCCEEEEEecC
Confidence 44455555666778999999999888887777765 13478899963
No 61
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=78.93 E-value=13 Score=43.58 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCC-
Q 007374 163 KIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP- 241 (606)
Q Consensus 163 ~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~- 241 (606)
.++++++.+.+ .++++++|.|.++ +-|..-+|+ ..+ .. .++...--+.+..+--+..+++
T Consensus 485 ~~~~~a~~l~~----------a~~i~~lGrG~~~--~iA~E~ALK-LkE----i~--~i~ae~~~~~E~~HGp~ali~~~ 545 (640)
T PTZ00295 485 QCKRIAEKLKN----------AKSMFILGKGLGY--PIALEGALK-IKE----IT--YIHAEGFSGGALKHGPFALIDKE 545 (640)
T ss_pred HHHHHHHHHhC----------CCcEEEEECCCCH--HHHHHHHHH-HHH----Hh--hhhhhhcChHHhhhhHHHHhcCC
Confidence 35555666643 4789999999885 222322332 100 01 1111111223333333444554
Q ss_pred CCEEEEEEcCCCC-CHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCchHHHHcCCCCCCeeccCC
Q 007374 242 ETTLVVVVSKTFT-TAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 242 ~~TL~iviSKSGt-T~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~A~~~Gi~~~~~f~~pd 307 (606)
+++.+|++|-+|. +.+++.+++.+++ .+.++++||++.....+ .. +.++.+|+
T Consensus 546 ~~~~VI~i~~~~~~~~~~~~~~~~lk~----------rga~vi~It~~~~~l~~--~a-d~~i~ip~ 599 (640)
T PTZ00295 546 KNTPVILIILDDEHKELMINAAEQVKA----------RGAYIIVITDDEDLVKD--FA-DEIILIPS 599 (640)
T ss_pred CCCeEEEEEcCCccHHHHHHHHHHHHH----------cCCEEEEEecCCccccc--cC-CeEEEeCC
Confidence 4676766666666 6677777666654 24589999986532111 11 23677776
No 62
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=73.04 E-value=55 Score=34.41 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=82.4
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhc---cCC--CCCEEEEEEcCCCCCHHHH
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT---GLN--PETTLVVVVSKTFTTAETM 259 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~---~ld--~~~TL~iviSKSGtT~ETl 259 (606)
+-|||-|+.|| |--++.+.|.+. -.+.+||..|.-+-+.++ ..+ ..+.++++==.|+ |-.
T Consensus 2 ~lvIVTGlSGA--GKsvAl~~lEDl----------GyycvDNLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~---~~~ 66 (286)
T COG1660 2 RLVIVTGLSGA--GKSVALRVLEDL----------GYYCVDNLPPQLLPKLADLMLTLESRITKVAVVIDVRSR---EFF 66 (286)
T ss_pred cEEEEecCCCC--cHHHHHHHHHhc----------CeeeecCCCHHHHHHHHHHHhhcccCCceEEEEEecccc---hhH
Confidence 34889999999 555666777643 356789999997766666 323 3566777766776 555
Q ss_pred HHHHHHHHHHHHhcCCcccCCeEEEEcCCc-hHHHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhhcCchHHHHHHH
Q 007374 260 LNARTLREWISTALGPSAVAKHMVAVSTNL-TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLK 338 (606)
Q Consensus 260 ~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-~~A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala~G~d~~~~lL~ 338 (606)
..+..+.+.|.++. + +.-+++.+.+.. .+.+.|.-. .-.. -+|.-|++.-++. .+ +++|+
T Consensus 67 ~~l~~~l~~l~~~~--~-~~~~iLFLeA~~~~Lv~RY~et---RR~H---------PL~~~~~l~~~I~--~E--RelL~ 127 (286)
T COG1660 67 GDLEEVLDELKDNG--D-IDPRVLFLEADDETLVRRYSET---RRSH---------PLSEDGLLLEAIA--KE--RELLA 127 (286)
T ss_pred HHHHHHHHHHHhcC--C-CCceEEEEECchhHHHHHHhhh---hhcC---------CCCccCcHHHHHH--HH--HHHHH
Confidence 56666677666553 1 345677777654 344443322 1111 2666675554543 34 79999
Q ss_pred HHHHHHHHhhC
Q 007374 339 GAWSIDQHFIS 349 (606)
Q Consensus 339 GA~~md~~f~~ 349 (606)
--+++.+....
T Consensus 128 pLk~~A~~vID 138 (286)
T COG1660 128 PLREIADLVID 138 (286)
T ss_pred HHHHHhhhEee
Confidence 98888877753
No 63
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=66.42 E-value=14 Score=42.08 Aligned_cols=139 Identities=15% Similarity=0.184 Sum_probs=78.9
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHH
Q 007374 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (606)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~ 263 (606)
-+.++.||-|-||-..-|....|... ..+++.+ .+-.+.+.+--+-. .+-..+++|.||.|..|+.+.+
T Consensus 355 ~rRli~iacgtSyhs~~A~R~ilEEL-------~eiPV~v--ElAsDflDR~~pif--RdDvc~FvSqSGETaDtllaL~ 423 (670)
T KOG1268|consen 355 CRRLIMVACGTSYHSALATRPILEEL-------SEIPVSV--ELASDFLDRNTPIF--RDDVCFFVSQSGETADTLLALR 423 (670)
T ss_pred ccccEEEEecchHHHHHHHHHHHHHH-------hcCCeee--ehhhhhHhcCCCce--eccEEEEEecCCchHHHHHHHH
Confidence 46799999999998877776666532 2333332 12222222222222 3345677899999999999888
Q ss_pred HHHHHHHHhcCCcccCCeEEEEcC--CchHHHHc--CCCCCCeeccCCCCCcc-----chhhhchhhHHHHhhcCchHH-
Q 007374 264 TLREWISTALGPSAVAKHMVAVST--NLTLVEKF--GIDPNNAFAFWDWVGGR-----YSVCSAVGVLPLSLQYGFSVV- 333 (606)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~--~~~~A~~~--Gi~~~~~f~~pd~VGGR-----fSv~SaVGLlPlala~G~d~~- 333 (606)
+.++ + +.-.|.||. ...++++- |+. ..--+.+|=- .|-+ |.|+-.||.++-|.+
T Consensus 424 Yc~~----~------gAl~vGvtNtvGSsIsR~thCGvH----iNaGpEigvAsTKaYTSQ~--i~lvm~aL~~s~d~is 487 (670)
T KOG1268|consen 424 YCKE----R------GALTVGVTNTVGSSISRETHCGVH----INAGPEIGVASTKAYTSQY--IALVMFALWMSEDRVS 487 (670)
T ss_pred HHHh----c------CceEEEeecccCccccccccccee----ccCCCccceeechHHHHHH--HHHHHHHHHhccchhh
Confidence 8865 2 234678874 33455543 332 2222333311 1222 345555665565543
Q ss_pred -----HHHHHHHHHHHHHhhC
Q 007374 334 -----EKFLKGAWSIDQHFIS 349 (606)
Q Consensus 334 -----~~lL~GA~~md~~f~~ 349 (606)
+|+++|-+...+..+.
T Consensus 488 ~~~RR~eIi~gL~~l~~~ike 508 (670)
T KOG1268|consen 488 KQERRKEIIDGLKDLPSQIKE 508 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776654
No 64
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=60.05 E-value=1.4e+02 Score=27.91 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=62.5
Q ss_pred eEEEEcccc--CchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 186 DVVAVGIGG--SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 186 ~VV~IGIGG--S~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
.||+.-+|| -.+|-.++..+|+. .+.+++++. ++.++++.+...+.+++ ++.+++-++++.+. +
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~--------~G~eVi~LG~~vp~e~i~~~a~~~~~d--~V~lS~~~~~~~~~---~ 71 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTE--------AGFEVINLGVMTSQEEFIDAAIETDAD--AILVSSLYGHGEID---C 71 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEcCccccCHHH---H
Confidence 355555554 47899999888863 578999996 89999999998876653 44445555554444 4
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcCC--------c---hHHHHcCCCCCCeec
Q 007374 263 RTLREWISTALGPSAVAKHMVAVSTN--------L---TLVEKFGIDPNNAFA 304 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~--------~---~~A~~~Gi~~~~~f~ 304 (606)
+.+.+.|++.+ .. .-+ |.+-.. . +.+++.|++ .+|+
T Consensus 72 ~~~~~~L~~~~-~~--~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~--~vf~ 118 (137)
T PRK02261 72 RGLREKCIEAG-LG--DIL-LYVGGNLVVGKHDFEEVEKKFKEMGFD--RVFP 118 (137)
T ss_pred HHHHHHHHhcC-CC--CCe-EEEECCCCCCccChHHHHHHHHHcCCC--EEEC
Confidence 55556666542 11 123 333321 1 468888976 3665
No 65
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=58.87 E-value=43 Score=31.16 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc------hHHHHcCCC
Q 007374 230 IDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGID 298 (606)
Q Consensus 230 ~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~------~~A~~~Gi~ 298 (606)
+.+.+.+....-....+++-.+|-+| ..|+...++++.+.. . ++++.||++- ..+++.+.+
T Consensus 57 ~~~~~~l~~~gvp~~~I~~e~~s~~T---~ena~~~~~~~~~~~----~-~~iilVT~~~H~~Ra~~~~~~~~~~ 123 (155)
T PF02698_consen 57 EAMRDYLIELGVPEERIILEPKSTNT---YENARFSKRLLKERG----W-QSIILVTSPYHMRRARMIFRKVGPD 123 (155)
T ss_dssp HHHHHHHHHT---GGGEEEE----SH---HHHHHHHHHHHHT-S----S-S-EEEE--CCCHHHHHHHHHHHH--
T ss_pred HHHHHHHHhcccchheeEccCCCCCH---HHHHHHHHHHHHhhc----C-CeEEEECCHHHHHHHHHHHHHhCCC
Confidence 45566664444334456666676665 555666777776542 2 6889999864 345565555
No 66
>COG1434 Uncharacterized conserved protein [Function unknown]
Probab=58.80 E-value=68 Score=31.67 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=38.8
Q ss_pred HHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc------hHHHHcCCC
Q 007374 234 KSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGID 298 (606)
Q Consensus 234 ~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~------~~A~~~Gi~ 298 (606)
+.+....-...-++.--+|.+|.| |++..++++.+. + -++++.||++- -.+++.|++
T Consensus 113 ~~~~~~gv~~~~i~~e~~s~~T~e---Na~~s~~~l~~~-~----~~~~ilVTs~~Hm~Ra~~~~~~~g~~ 175 (223)
T COG1434 113 RYLENLGVPAERIILEDRSRNTVE---NARFSRRLLRTQ-G----PESVILVTSPYHMPRALLLFRKLGIS 175 (223)
T ss_pred HHHHHcCCCcccEEecCCCccHHH---HHHHHHHHHHHc-C----CceEEEECCHHHHHHHHHHHHHCCCc
Confidence 444444445555667777777655 667778888775 2 36899999864 467888887
No 67
>PRK13018 cell division protein FtsZ; Provisional
Probab=54.86 E-value=1.3e+02 Score=33.11 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=52.5
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEc---C---CCCCHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVS---K---TFTTAET 258 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviS---K---SGtT~ET 258 (606)
.|.|||+||. |..++....... . ..+-|+. |+|...+.. ++..+ -+.+-. | +|...|.
T Consensus 30 ~I~ViGvGGa--G~N~v~~m~~~~------~--~~v~~iaiNTD~q~L~~----~~a~~-ki~iG~~~t~G~GaG~dp~~ 94 (378)
T PRK13018 30 KIVVVGCGGA--GNNTINRLYEIG------I--EGAETIAINTDAQHLAM----IKADK-KILIGKSLTRGLGAGGDPEV 94 (378)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcC------C--CCceEEEEECCHHHHhc----CCCCc-EEecCCccCCCCCCCCChHH
Confidence 6899999998 888887665421 1 2355554 789865543 33333 333321 2 4677776
Q ss_pred -HHHHHHHHHHHHHhcCCcccCCeEEEEcCC-------------chHHHHcCCC
Q 007374 259 -MLNARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGID 298 (606)
Q Consensus 259 -l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~-------------~~~A~~~Gi~ 298 (606)
-..+....+.+.+.+.. ..+|.||.. .+.++++|+.
T Consensus 95 G~~aaee~~d~I~~~le~----~D~vfI~aGLGGGTGSGaapvIa~iake~g~l 144 (378)
T PRK13018 95 GRKAAEESRDEIKEVLKG----ADLVFVTAGMGGGTGTGAAPVVAEIAKEQGAL 144 (378)
T ss_pred HHHHHHHHHHHHHHHhcC----CCEEEEEeeccCcchhhHHHHHHHHHHHcCCC
Confidence 33344555666655421 234555531 1577877654
No 68
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=54.33 E-value=52 Score=32.99 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=48.1
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec
Q 007374 146 INSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA 225 (606)
Q Consensus 146 ~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~ 225 (606)
....|+.+.+..+..++.+++..+.+.+.. ......|.||+.++.+-+.++.++...+ ++.++.+..
T Consensus 53 lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~------~~~~~~l~ig~~~~~~~~~~l~~~~~~~-------p~v~l~i~~ 119 (279)
T TIGR03339 53 LTDAGHRLLPIVERLFQQEAEAEFLLRESG------ALREGSLRIAATAPYYVLDLVARFRQRY-------PGIEVSVRI 119 (279)
T ss_pred EChhHHHHHHHHHHHHHHHHHHHHHHHHhc------cCcceEEEEeCchHHHHHHHHHHHHHHC-------CCcEEEEEE
Confidence 445677888888878877777777665421 1234578899987766666666554432 346777775
Q ss_pred cCChHHHHHHh
Q 007374 226 NVDPIDVAKSI 236 (606)
Q Consensus 226 nvDp~~l~~~l 236 (606)
...+.-+..+.
T Consensus 120 ~~~~~~~~~l~ 130 (279)
T TIGR03339 120 GNSQEVLQALQ 130 (279)
T ss_pred CCHHHHHHHHH
Confidence 54444444444
No 69
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=54.26 E-value=78 Score=33.55 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=65.5
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCC-----CCCEEEEEEcCCCCCHHHH
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN-----PETTLVVVVSKTFTTAETM 259 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld-----~~~TL~iviSKSGtT~ETl 259 (606)
+-|||-|+.|| |--.+..+|.+. -.+-+||+.|.-+.+.++.+. .++.++++-..|+.-.+.+
T Consensus 2 ~~vIiTGlSGa--GKs~Al~~lED~----------Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~ 69 (284)
T PF03668_consen 2 ELVIITGLSGA--GKSTALRALEDL----------GYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL 69 (284)
T ss_pred eEEEEeCCCcC--CHHHHHHHHHhc----------CeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH
Confidence 45899999999 665666777653 367789999998887776544 4688899999988755443
Q ss_pred HHHHHHHHHHHHhcCCcccCCeEEEEcCCc-hHHHHcCCC
Q 007374 260 LNARTLREWISTALGPSAVAKHMVAVSTNL-TLVEKFGID 298 (606)
Q Consensus 260 ~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-~~A~~~Gi~ 298 (606)
..+.+.+.+. + ..-+++...+.. .+.+.|.-.
T Consensus 70 ---~~~~~~l~~~-~---~~~~ilFLdA~d~~LirRy~eT 102 (284)
T PF03668_consen 70 ---FEALDELRKK-G---IDVRILFLDASDEVLIRRYSET 102 (284)
T ss_pred ---HHHHHHHHhc-C---CceEEEEEECChHHHHHHHHhc
Confidence 3444555544 2 345778887654 577776655
No 70
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=52.08 E-value=4.9 Score=39.53 Aligned_cols=61 Identities=20% Similarity=0.121 Sum_probs=33.1
Q ss_pred EEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCC
Q 007374 189 AVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTF 253 (606)
Q Consensus 189 ~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSG 253 (606)
+++||+|.=||+++.+.|..... ..+..+.++-.++|.....+.+.|+..+.+=|..-+.|
T Consensus 1 vV~IGaSaGG~~al~~il~~lp~----~~~~~ivivqH~~~~~~~~l~~~L~~~t~l~V~~a~~g 61 (182)
T PF01339_consen 1 VVAIGASAGGPEALQEILSALPA----DFPAAIVIVQHMPPGFTSSLAERLARHTSLPVREAEDG 61 (182)
T ss_dssp EEEEEE-TTHHHHHCCCHCCS-T----TSSSEEEEEE---TTHHHHHHHHHHHHSSSEEEE--TT
T ss_pred CEEEEeCCCCHHHHHHHHHHhcc----CCCceEEEEECCCCCcchHHHHHHhCcCCCeEEEcCCC
Confidence 58899999999999988876431 22356677767776655444444433333333333333
No 71
>PRK09330 cell division protein FtsZ; Validated
Probab=50.04 E-value=1.4e+02 Score=33.01 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=56.4
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEcC-----CCCCHHH
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSK-----TFTTAET 258 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviSK-----SGtT~ET 258 (606)
..|.|||+||. |..++....... .. .+-|+. |+|...+. ..+..+.+.+=-+. +|...|.
T Consensus 14 ~~IkViGvGG~--G~Nav~~m~~~~------~~--~v~fia~NTD~q~L~----~~~a~~ki~lG~~~t~GlGaG~~pe~ 79 (384)
T PRK09330 14 AVIKVIGVGGG--GGNAVNRMIEEG------IQ--GVEFIAANTDAQALL----KSKAPVKIQLGEKLTRGLGAGANPEV 79 (384)
T ss_pred CeEEEEEECCc--HHHHHHHHHHcC------CC--CceEEEEeCcHHHHh----cCCCCeEEEcCCcccccCCCCCCHHH
Confidence 35889999998 888887665431 12 344554 78976554 33333333222211 3556665
Q ss_pred -HHHHHHHHHHHHHhcCCcccCCeEEEEcCC-------------chHHHHcCCCCCCeeccC
Q 007374 259 -MLNARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGIDPNNAFAFW 306 (606)
Q Consensus 259 -l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~-------------~~~A~~~Gi~~~~~f~~p 306 (606)
-..+...++.+++.+. ...+|.||.. .++|+++|+..--+++.|
T Consensus 80 G~~aaee~~e~I~~~l~----~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~P 137 (384)
T PRK09330 80 GRKAAEESREEIREALE----GADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKP 137 (384)
T ss_pred HHHHHHHHHHHHHHHHc----CCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 3333444455555442 2456777742 167888887632344445
No 72
>PRK10494 hypothetical protein; Provisional
Probab=49.83 E-value=78 Score=32.88 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=44.4
Q ss_pred HHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc------hHHHHcCCCCCCee
Q 007374 230 IDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGIDPNNAF 303 (606)
Q Consensus 230 ~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~------~~A~~~Gi~~~~~f 303 (606)
+..++.+..+.-...-+++-.+|-+|.|-..+.+ +++ + .++++.||+.- ..+++.|++ +.
T Consensus 140 ~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~---~~~----~----~~~iiLVTsa~Hm~RA~~~f~~~Gl~---v~ 205 (259)
T PRK10494 140 EVGARVAQSLGVPREDIITLDLPKDTEEEAAAVK---QAI----G----DAPFLLVTSASHLPRAMIFFQQEGLN---PL 205 (259)
T ss_pred HHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHH---HHh----C----CCCEEEECCHHHHHHHHHHHHHcCCc---ee
Confidence 3446666666555556688889999988766543 332 1 24689999863 467889997 88
Q ss_pred ccCCC
Q 007374 304 AFWDW 308 (606)
Q Consensus 304 ~~pd~ 308 (606)
+.|-+
T Consensus 206 p~Ptd 210 (259)
T PRK10494 206 PAPAN 210 (259)
T ss_pred ecCCc
Confidence 88854
No 73
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=49.68 E-value=1.2e+02 Score=32.94 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=39.5
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEe-ccCChHHHHHHhccCCCCCEEEEEEcC------CCCCHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFL-ANVDPIDVAKSITGLNPETTLVVVVSK------TFTTAET 258 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl-~nvDp~~l~~~l~~ld~~~TL~iviSK------SGtT~ET 258 (606)
.|.+||+||. |..++-...... -..+-|+ -|+|...+. .++.++. +.+-++ +|+..|.
T Consensus 19 ~i~viGvGg~--G~n~v~~l~~~~--------~~~~~~iainTD~~~L~----~~~a~~k-i~iG~~~t~G~GaG~~~~~ 83 (349)
T TIGR00065 19 KIKVIGVGGG--GNNTVNRMLEEG--------VEGVEFIAINTDAQHLK----TTKADKK-ILIGKKLTRGLGAGGNPEI 83 (349)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcC--------CCceEEEEEECCHHHHh----cCCCCeE-EEcCCCCCCCCCCCCCHHH
Confidence 5899999998 888876655431 1234454 378976554 3333333 333322 4556665
Q ss_pred H-HHHHHHHHHHHHhc
Q 007374 259 M-LNARTLREWISTAL 273 (606)
Q Consensus 259 l-~n~~~~~~~l~~~~ 273 (606)
- ..+...++.+.+.+
T Consensus 84 G~~~aee~~d~Ir~~l 99 (349)
T TIGR00065 84 GRKAAEESRDEIRKLL 99 (349)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2 23334444454443
No 74
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=49.36 E-value=2.3e+02 Score=30.81 Aligned_cols=96 Identities=22% Similarity=0.320 Sum_probs=58.8
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEcC-----CCCCHHH
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSK-----TFTTAET 258 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviSK-----SGtT~ET 258 (606)
-.|+|||+||. |..++.......- . .+-|+. |+|...+... ...+.+-+=-+. -|.-.|.
T Consensus 12 ~~I~VIGvGg~--G~n~v~~m~~~~~------~--gve~ia~nTD~q~L~~~----~a~~ki~iG~~~t~GlGaGa~P~v 77 (338)
T COG0206 12 ARIKVIGVGGA--GGNAVNRMIEEGV------E--GVEFIAINTDAQALKSS----KADRKILIGESITRGLGAGANPEV 77 (338)
T ss_pred ceEEEEEeCCc--chHHHHHHHHhhh------C--ceEEEEeccCHHHHhcc----ccCeEEEeccceeeccCCCCCcHH
Confidence 46999999998 8888876665421 2 255654 8997665433 333333333321 2555666
Q ss_pred -HHHHHHHHHHHHHhcCCcccCCeEEEEcCC-------------chHHHHcCCC
Q 007374 259 -MLNARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGID 298 (606)
Q Consensus 259 -l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~-------------~~~A~~~Gi~ 298 (606)
..++...++-+.+.+. ..++|.||+. .+.|++.|+.
T Consensus 78 G~~aAee~~~~I~~~l~----g~dmvfitaG~GGGTGtGaaPVvakiake~g~l 127 (338)
T COG0206 78 GRAAAEESIEEIEEALK----GADMVFVTAGMGGGTGTGAAPVVAEIAKELGAL 127 (338)
T ss_pred HHHHHHHHHHHHHHHhc----cCCeEEEEeeecCCccccccHHHHHHHHhcCCc
Confidence 4555666666666542 3458888852 1688888877
No 75
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=48.64 E-value=2.8e+02 Score=27.40 Aligned_cols=97 Identities=22% Similarity=0.202 Sum_probs=63.8
Q ss_pred eEEEEccccC--chhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 186 DVVAVGIGGS--FLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 186 ~VV~IGIGGS--~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
.||+..++|- ++|..++..+|+. .|.+++++. |+.++++.+.+...+|. +|.+|-|-++ ++.++
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~--------~G~~vi~LG~~vp~e~~v~~~~~~~pd---~v~lS~~~~~--~~~~~ 152 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRA--------NGFDVIDLGRDVPIDTVVEKVKKEKPL---MLTGSALMTT--TMYGQ 152 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHh--------CCcEEEECCCCCCHHHHHHHHHHcCCC---EEEEcccccc--CHHHH
Confidence 5666666654 7999999998874 467899985 99999999998876654 5556655433 24445
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcC---CchHHHHcCCC
Q 007374 263 RTLREWISTALGPSAVAKHMVAVST---NLTLVEKFGID 298 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~---~~~~A~~~Gi~ 298 (606)
+.+.+.+++.+..+ +=-|.|-. +.+.+++.|.+
T Consensus 153 ~~~i~~l~~~~~~~---~v~i~vGG~~~~~~~~~~~gad 188 (197)
T TIGR02370 153 KDINDKLKEEGYRD---SVKFMVGGAPVTQDWADKIGAD 188 (197)
T ss_pred HHHHHHHHHcCCCC---CCEEEEEChhcCHHHHHHhCCc
Confidence 66666676653221 11233332 34788888876
No 76
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=45.36 E-value=78 Score=29.20 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=36.4
Q ss_pred HHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc------hHHHHcCC
Q 007374 231 DVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGI 297 (606)
Q Consensus 231 ~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~------~~A~~~Gi 297 (606)
.+.+.+........-+++-.+|-+|. .|+...++++.+.. .++++.||+.- ..++..+.
T Consensus 55 ~m~~~l~~~gv~~~~I~~e~~s~~T~---ena~~~~~~~~~~~-----~~~i~lVTs~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 55 AMARYLIELGVPAEAILLEDRSTNTY---ENARFSAELLRERG-----IRSVLLVTSAYHMPRALLIFRKAGL 119 (150)
T ss_pred HHHHHHHHcCCCHHHeeecCCCCCHH---HHHHHHHHHHHhcC-----CCeEEEECCHHHHHHHHHHHHHcCC
Confidence 45555554433334566677777754 55667777777653 26799999864 34566555
No 77
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=44.29 E-value=3.4e+02 Score=28.33 Aligned_cols=164 Identities=19% Similarity=0.217 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHh
Q 007374 157 VWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236 (606)
Q Consensus 157 ~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l 236 (606)
+....+++.+=.+++.+| ++..+|++-|--|+ |--.+..++-... ...+.+++-|+.-|-.++.+++
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G-------~pannvLL~G~rGt--GKSSlVkall~~y----~~~GLRlIev~k~~L~~l~~l~ 98 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQG-------LPANNVLLWGARGT--GKSSLVKALLNEY----ADQGLRLIEVSKEDLGDLPELL 98 (249)
T ss_pred HHHHHHHHHHHHHHHHcC-------CCCcceEEecCCCC--CHHHHHHHHHHHH----hhcCceEEEECHHHhccHHHHH
Confidence 344455555556666554 57889999988777 4334444443322 1346788777655545555554
Q ss_pred ccC--CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc-hHHHHcCCC----CCCeeccCCCC
Q 007374 237 TGL--NPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL-TLVEKFGID----PNNAFAFWDWV 309 (606)
Q Consensus 237 ~~l--d~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-~~A~~~Gi~----~~~~f~~pd~V 309 (606)
..| .|.+.++++==-||..-|+ .++.++..|+-.+ +..+.+=++..|+|. .+..|.-.+ ...-+.-.|.+
T Consensus 99 ~~l~~~~~kFIlf~DDLsFe~~d~--~yk~LKs~LeGgl-e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~ 175 (249)
T PF05673_consen 99 DLLRDRPYKFILFCDDLSFEEGDT--EYKALKSVLEGGL-EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTI 175 (249)
T ss_pred HHHhcCCCCEEEEecCCCCCCCcH--HHHHHHHHhcCcc-ccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHH
Confidence 443 3688888888889998887 4677777665322 222333455678774 222222111 11235555677
Q ss_pred CccchhhhchhhHHHHhhcCchHHHHHHHH
Q 007374 310 GGRYSVCSAVGVLPLSLQYGFSVVEKFLKG 339 (606)
Q Consensus 310 GGRfSv~SaVGLlPlala~G~d~~~~lL~G 339 (606)
--+-|+.--+| |-+.+. -+| -++.|+=
T Consensus 176 eEklSLsDRFG-L~l~F~-~~~-q~~YL~I 202 (249)
T PF05673_consen 176 EEKLSLSDRFG-LWLSFY-PPD-QEEYLAI 202 (249)
T ss_pred HHHHhHHHhCC-cEEEec-CCC-HHHHHHH
Confidence 78888888899 677774 677 4777773
No 78
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=43.57 E-value=3e+02 Score=26.35 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCccceEEEEccc--cCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEcCCCCCHH
Q 007374 181 GKVLKDVVAVGIG--GSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAE 257 (606)
Q Consensus 181 g~~i~~VV~IGIG--GS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~E 257 (606)
|++.+ |++.=+| |=+-|.+.+.++|.. .+.+++... ...|+++.+.. ++..--.+.|+|-+|.=.+
T Consensus 10 g~rpr-vlvak~GlDgHd~gakvia~~l~d--------~GfeVi~~g~~~tp~e~v~aA--~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 10 GARPR-VLVAKLGLDGHDRGAKVIARALAD--------AGFEVINLGLFQTPEEAVRAA--VEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred CCCce-EEEeccCccccccchHHHHHHHHh--------CCceEEecCCcCCHHHHHHHH--HhcCCCEEEEEeccchHHH
Confidence 34444 5554444 778999999999985 467888875 67777775554 3445567888888888776
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCeEEEEc-CC-----chHHHHcCCC
Q 007374 258 TMLNARTLREWISTALGPSAVAKHMVAVS-TN-----LTLVEKFGID 298 (606)
Q Consensus 258 Tl~n~~~~~~~l~~~~g~~~~~~h~vaVT-~~-----~~~A~~~Gi~ 298 (606)
.. ..+++.|.+++. .++..+- .+ ....++.|++
T Consensus 79 l~---~~lve~lre~G~-----~~i~v~~GGvip~~d~~~l~~~G~~ 117 (143)
T COG2185 79 LV---PGLVEALREAGV-----EDILVVVGGVIPPGDYQELKEMGVD 117 (143)
T ss_pred HH---HHHHHHHHHhCC-----cceEEeecCccCchhHHHHHHhCcc
Confidence 64 456666766642 3344333 21 1457778887
No 79
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=42.38 E-value=45 Score=35.34 Aligned_cols=39 Identities=31% Similarity=0.596 Sum_probs=25.3
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAK 234 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~ 234 (606)
.|.+||+||. |..++-....... . .+-|+. |+|...+..
T Consensus 2 ~i~viGvGg~--G~n~v~~l~~~~~------~--~~~~~a~ntD~~~L~~ 41 (304)
T cd02201 2 KIKVIGVGGG--GGNAVNRMIESGL------E--GVEFIAANTDAQALAK 41 (304)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcCC------C--CceEEEEECCHHHHhc
Confidence 4889999998 8888766554321 2 244443 689876654
No 80
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=41.63 E-value=1.3e+02 Score=30.65 Aligned_cols=125 Identities=10% Similarity=0.179 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHcChHHHHHHHhcC-CCCC----CCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHH
Q 007374 96 TLKTMDKLYQLAEAAQLNNKINRMYNG-EKIN----STENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFS 168 (606)
Q Consensus 96 ~~~~l~~l~~la~~~~l~~~~~~m~~G-~~iN----~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa 168 (606)
+-+.++.|..++++-.+.++-++|.-- -.|. .-|.. -.|. -|.+..-.+...|+...+.+...+++++++.
T Consensus 2 ~~~~l~~f~~v~~~gs~s~AA~~L~isqpavS~~I~~LE~~lG~~LF--~R~~r~~~lT~~G~~l~~~a~~~l~~~~~~~ 79 (275)
T PRK03601 2 DTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLF--TRHRNNIRLTAAGERLLPYAETLMNTWQAAK 79 (275)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCCceE--EECCCceEECHhHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777776666666411 0000 00111 0111 1444443344567788888888889999888
Q ss_pred HHHHcCCccccCCCccceEEEEccccC---chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhc
Q 007374 169 ETIRSGSWVGATGKVLKDVVAVGIGGS---FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 237 (606)
Q Consensus 169 ~~ir~g~~~g~~g~~i~~VV~IGIGGS---~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~ 237 (606)
+++.+.. ...-|.||+..+ .+.|.++..+.+.+ ++.++.+....+.+-+..+.+
T Consensus 80 ~~~~~~~--------~~~~l~Ig~~~~~~~~~l~~~l~~f~~~~-------P~v~v~~~~~~~~~~~~~l~~ 136 (275)
T PRK03601 80 KEVAHTS--------QHNELSIGASASLWECMLTPWLGRLYQNQ-------EALQFEARIAQRQSLVKQLHE 136 (275)
T ss_pred HHHhhcc--------cCceEEEeccHHHHHHHHHHHHHHHHHhC-------CCcEEEEEECChHHHHHHHHc
Confidence 8886532 123577777744 34455555443322 356777766555554555544
No 81
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=41.58 E-value=1.7e+02 Score=26.03 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=54.0
Q ss_pred CchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEcCC-CCCHHHHHHHHHHHHHHHHh
Q 007374 195 SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKT-FTTAETMLNARTLREWISTA 272 (606)
Q Consensus 195 S~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviSKS-GtT~ETl~n~~~~~~~l~~~ 272 (606)
-.+|.+++..+|+. .+.++.++. ++.++++.+.+.+.+|. +|++|-| +.+.+.+ ..+.+.+++.
T Consensus 12 H~lG~~~~~~~l~~--------~G~~V~~lg~~~~~~~l~~~~~~~~pd---vV~iS~~~~~~~~~~---~~~i~~l~~~ 77 (119)
T cd02067 12 HDIGKNIVARALRD--------AGFEVIDLGVDVPPEEIVEAAKEEDAD---AIGLSGLLTTHMTLM---KEVIEELKEA 77 (119)
T ss_pred hhHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC---EEEEeccccccHHHH---HHHHHHHHHc
Confidence 47899999988874 467888874 88898998888877665 5555555 5555443 4444444443
Q ss_pred cCCcccCCeEEEEcC-----CchHHHHcCCC
Q 007374 273 LGPSAVAKHMVAVST-----NLTLVEKFGID 298 (606)
Q Consensus 273 ~g~~~~~~h~vaVT~-----~~~~A~~~Gi~ 298 (606)
+. .+-.|.+.. ..+.+++.|++
T Consensus 78 -~~---~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 78 -GL---DDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred -CC---CCCeEEEECCCCChhHHHHHHcCCe
Confidence 22 011234432 23577888876
No 82
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=41.02 E-value=27 Score=31.39 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCchHHHHcCCC
Q 007374 244 TLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGID 298 (606)
Q Consensus 244 TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~A~~~Gi~ 298 (606)
-++||.|+||.|.--++.++ ....++++|++.+.++...+-
T Consensus 18 k~Ivv~T~sG~ta~~isk~R--------------P~~pIiavt~~~~~~r~l~l~ 58 (117)
T PF02887_consen 18 KAIVVFTESGRTARLISKYR--------------PKVPIIAVTPNESVARQLSLY 58 (117)
T ss_dssp SEEEEE-SSSHHHHHHHHT---------------TSSEEEEEESSHHHHHHGGGS
T ss_pred CEEEEECCCchHHHHHHhhC--------------CCCeEEEEcCcHHHHhhhhcc
Confidence 37999999999987665322 346799999999999887654
No 83
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.19 E-value=31 Score=27.58 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCC
Q 007374 520 YNIGQLLAIYEHRIAVEGFIWGINSF 545 (606)
Q Consensus 520 ~~LG~Lia~yE~~t~v~g~L~gINpF 545 (606)
.++=.|+.+||..+ -+||||
T Consensus 35 envk~ll~lYE~Vs------~~iNPF 54 (55)
T PF05377_consen 35 ENVKDLLSLYEVVS------NQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHH------ccCCCC
Confidence 56788999999866 599999
No 84
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=36.61 E-value=67 Score=32.36 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc-----hHHHHcCCCCCCeeccCC
Q 007374 245 LVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL-----TLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 245 L~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-----~~A~~~Gi~~~~~f~~pd 307 (606)
+.|.+|.+|+..|.+..+ +++. .. ..+-.++||++. +.|+++||+ ++.++.
T Consensus 2 i~vl~Sg~Gsn~~al~~~------~~~~--~l-~~~i~~visn~~~~~~~~~A~~~gIp---~~~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSNFRAIHDA------CLDG--RV-NGDVVVVVTNKPGCGGAEYARENGIP---VLVYPK 57 (207)
T ss_pred EEEEEeCCChhHHHHHHH------HHcC--CC-CeEEEEEEEeCCCChHHHHHHHhCCC---EEEecc
Confidence 578899999999886432 3222 11 123345566653 679999999 665543
No 85
>PLN02828 formyltetrahydrofolate deformylase
Probab=36.35 E-value=67 Score=33.74 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=33.1
Q ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEE-EEcCCc--------hHHHHcCCCCCCeeccCC
Q 007374 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMV-AVSTNL--------TLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~v-aVT~~~--------~~A~~~Gi~~~~~f~~pd 307 (606)
..-+.|.+||+|+..+-+.... . .|. ....++ +||.+. +.|+++||| ++.+|.
T Consensus 70 ~~riavlvSg~g~nl~~ll~~~------~--~g~--l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP---~~~~~~ 131 (268)
T PLN02828 70 KYKIAVLASKQDHCLIDLLHRW------Q--DGR--LPVDITCVISNHERGPNTHVMRFLERHGIP---YHYLPT 131 (268)
T ss_pred CcEEEEEEcCCChhHHHHHHhh------h--cCC--CCceEEEEEeCCCCCCCchHHHHHHHcCCC---EEEeCC
Confidence 3468889999999988864321 1 122 122344 456542 579999999 665554
No 86
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=35.85 E-value=36 Score=33.68 Aligned_cols=32 Identities=16% Similarity=-0.016 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCC--CCCHHHHHHH
Q 007374 331 SVVEKFLKGAWSIDQHFISAPY--EKNIPVLLGL 362 (606)
Q Consensus 331 d~~~~lL~GA~~md~~f~~~~~--~~N~p~~lAl 362 (606)
-.+--+++=|++|.+.+-++-+ ..||..+...
T Consensus 119 Rtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 119 RTIPVMLDIARDIEELCPDAWLINYTNPMGIVTE 152 (183)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHH
Confidence 3477888889999999865532 4688666554
No 87
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=35.35 E-value=87 Score=32.80 Aligned_cols=41 Identities=22% Similarity=0.093 Sum_probs=25.3
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCc-eEEEeccCChHHHHHHhc
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGR-QLRFLANVDPIDVAKSIT 237 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~-~i~fl~nvDp~~l~~~l~ 237 (606)
+.++++|-||.. +++..+|.. .+. ++.+++ -+++..+++.+
T Consensus 123 ~~vlilGaGGaa---rAi~~aL~~--------~g~~~i~i~n-R~~~~a~~la~ 164 (272)
T PRK12550 123 LVVALRGSGGMA---KAVAAALRD--------AGFTDGTIVA-RNEKTGKALAE 164 (272)
T ss_pred CeEEEECCcHHH---HHHHHHHHH--------CCCCEEEEEe-CCHHHHHHHHH
Confidence 379999999985 556656653 233 455554 56665555543
No 88
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.23 E-value=3.9e+02 Score=25.14 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=59.4
Q ss_pred chhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcC
Q 007374 196 FLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG 274 (606)
Q Consensus 196 ~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g 274 (606)
+.|...+..+|+. .+.+++.+. ++.|+.+.+...+-++ -++-++|..|+|.|-+ +.+.+.|++++
T Consensus 15 diGk~iv~~~l~~--------~GfeVi~LG~~v~~e~~v~aa~~~~a--diVglS~l~~~~~~~~---~~~~~~l~~~g- 80 (134)
T TIGR01501 15 AVGNKILDHAFTN--------AGFNVVNLGVLSPQEEFIKAAIETKA--DAILVSSLYGHGEIDC---KGLRQKCDEAG- 80 (134)
T ss_pred hHhHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCC--CEEEEecccccCHHHH---HHHHHHHHHCC-
Confidence 6889888888874 467888885 7999999887766544 3566788888887754 44566666553
Q ss_pred CcccCCeEEEEcCC-----c------hHHHHcCCCCCCeec
Q 007374 275 PSAVAKHMVAVSTN-----L------TLVEKFGIDPNNAFA 304 (606)
Q Consensus 275 ~~~~~~h~vaVT~~-----~------~~A~~~Gi~~~~~f~ 304 (606)
. ....|.+-.. . +.+++.|++ ++|.
T Consensus 81 l---~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~--~vF~ 116 (134)
T TIGR01501 81 L---EGILLYVGGNLVVGKQDFPDVEKRFKEMGFD--RVFA 116 (134)
T ss_pred C---CCCEEEecCCcCcChhhhHHHHHHHHHcCCC--EEEC
Confidence 1 1223434332 1 247888986 4665
No 89
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=35.15 E-value=2.4e+02 Score=29.03 Aligned_cols=94 Identities=14% Similarity=0.222 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHHcChHHHHHHHhc-CCCCC----CCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHH
Q 007374 94 NATLKTMDKLYQLAEAAQLNNKINRMYN-GEKIN----STENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166 (606)
Q Consensus 94 ~i~~~~l~~l~~la~~~~l~~~~~~m~~-G~~iN----~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~ 166 (606)
+++-..++.|.++++...+.++-++|+- --.|. .=|.. -.|.. |...+-.....|+.+.+.....+..+++
T Consensus 4 ~~~l~~L~~f~~v~e~gs~s~AA~~L~isqpavS~~i~~LE~~lg~~Lf~--R~~r~~~lT~~G~~l~~~a~~ll~~~~~ 81 (305)
T CHL00180 4 PFTLDQLRILKAIATEGSFKKAAESLYISQPAVSLQIKNLEKQLNIPLFD--RSKNKASLTEAGELLLRYGNRILALCEE 81 (305)
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhCCEEEE--ecCCCceECHhHHHHHHHHHHHHHHHHH
Confidence 5677788888999888888777777751 10000 00111 12222 4444434455678888888888888888
Q ss_pred HHHHHHcCCccccCCCccceEEEEccccC
Q 007374 167 FSETIRSGSWVGATGKVLKDVVAVGIGGS 195 (606)
Q Consensus 167 fa~~ir~g~~~g~~g~~i~~VV~IGIGGS 195 (606)
+.+.++.-. ......|.||+..|
T Consensus 82 ~~~~~~~~~------~~~~g~l~ig~~~~ 104 (305)
T CHL00180 82 TCRALEDLK------NLQRGTLIIGASQT 104 (305)
T ss_pred HHHHHHHhh------cccCceEEEEEcCc
Confidence 877775421 11345678888866
No 90
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=34.32 E-value=89 Score=33.26 Aligned_cols=103 Identities=21% Similarity=0.241 Sum_probs=54.4
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEc---C---CCCCHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVS---K---TFTTAET 258 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviS---K---SGtT~ET 258 (606)
.|.+||+||- |..++-...... .. .+.|+. |+|..++.. ++.++. +.+-. | +|...|.
T Consensus 2 ~i~viGvGg~--G~n~v~~~~~~~------~~--~~~~iainTd~~~L~~----~~a~~k-i~iG~~~t~g~GaG~~~~~ 66 (303)
T cd02191 2 KIAVIGFGGA--GGNIVDKFLEYD------KE--GRSAVAVNTDAQDLLG----LEAENR-VLIGQARTKGLGAGANPEL 66 (303)
T ss_pred EEEEEEECch--HHHHHHHHHHcC------CC--CccEEEEECcHHHHhc----CCCCcE-EecCCccccCCCCCCCHHH
Confidence 4789999998 888887665531 12 234443 789776654 333333 33322 1 4667665
Q ss_pred -HHHHHHHHHHHHHhcCCcccCCeEEEEcCC-------------chHHHHcCCCCCCeeccCC
Q 007374 259 -MLNARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 259 -l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~-------------~~~A~~~Gi~~~~~f~~pd 307 (606)
-..+...++.+++.... ..+|.||.. .+.+++.++..-.+++.|.
T Consensus 67 G~~~a~e~~~~I~~~le~----~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf 125 (303)
T cd02191 67 GAEAAEEVQEAIDNIPVH----VDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPF 125 (303)
T ss_pred HHHHHHHHHHHHHHHHcC----CCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 23334455555554321 224555531 1567777664223444453
No 91
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.96 E-value=3.2e+02 Score=25.54 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=53.3
Q ss_pred EEEEccccCchhHHHHHHhhhcchh--------H-HhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHH
Q 007374 187 VVAVGIGGSFLGPLFVHTALQTDLE--------A-IECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAE 257 (606)
Q Consensus 187 VV~IGIGGS~LGp~~~~~aL~~~~~--------~-~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~E 257 (606)
|+|+|--|- +|-.++.+.+..... . .....+.++...|-.|++.+.+.+..+ +++|.+++-+.. +
T Consensus 1 I~V~GatG~-vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~---d~vi~~~~~~~~--~ 74 (183)
T PF13460_consen 1 ILVFGATGF-VGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGA---DAVIHAAGPPPK--D 74 (183)
T ss_dssp EEEETTTSH-HHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTS---SEEEECCHSTTT--H
T ss_pred eEEECCCCh-HHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhc---chhhhhhhhhcc--c
Confidence 456665443 577777666654210 0 001234566666788998888888754 578887765545 2
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCeEEEEcCC
Q 007374 258 TMLNARTLREWISTALGPSAVAKHMVAVSTN 288 (606)
Q Consensus 258 Tl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~ 288 (606)
....+.+.+.+++. | .+|+|.+|+.
T Consensus 75 -~~~~~~~~~a~~~~-~----~~~~v~~s~~ 99 (183)
T PF13460_consen 75 -VDAAKNIIEAAKKA-G----VKRVVYLSSA 99 (183)
T ss_dssp -HHHHHHHHHHHHHT-T----SSEEEEEEET
T ss_pred -cccccccccccccc-c----cccceeeecc
Confidence 44455555555543 1 4688888863
No 92
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=33.80 E-value=91 Score=30.78 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=35.6
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec---cCChHHHHHH-------hccCCCCCEEEEEE
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA---NVDPIDVAKS-------ITGLNPETTLVVVV 249 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~---nvDp~~l~~~-------l~~ld~~~TL~ivi 249 (606)
-++|++|.+|+...-..+.+.+..- ...+++++ |.+++.+.+. ++.-.|++-+++|.
T Consensus 34 ~~~iNLGfsG~~~le~~~a~~ia~~--------~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 34 LDVINLGFSGNGKLEPEVADLIAEI--------DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp -EEEEEE-TCCCS--HHHHHHHHHS----------SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred CCeEeeeecCccccCHHHHHHHhcC--------CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 4799999999999988888888753 23677765 8888866543 34445666666655
No 93
>PRK05442 malate dehydrogenase; Provisional
Probab=33.17 E-value=3e+02 Score=29.65 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=12.1
Q ss_pred ceEEEEcc-c--cCchhHHHHH
Q 007374 185 KDVVAVGI-G--GSFLGPLFVH 203 (606)
Q Consensus 185 ~~VV~IGI-G--GS~LGp~~~~ 203 (606)
..|.+||. | ||.+...++.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~ 26 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIAS 26 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHh
Confidence 46899998 6 5555444444
No 94
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=32.80 E-value=1.1e+02 Score=32.14 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=52.4
Q ss_pred cceEEEEccccCchhHHHHHHhhhc-chhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 184 LKDVVAVGIGGSFLGPLFVHTALQT-DLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~-~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
|.-++.+-+-++.+....+.++|.. ... .-+.++.+-+. | ...-+.|.+|++|+..+.+..+
T Consensus 42 F~mr~~v~~~~~~~~~~~l~~~l~~~~~~----~~~l~i~l~~~-~------------~~~ki~vl~Sg~g~nl~~l~~~ 104 (280)
T TIGR00655 42 FFMRVEFQLEGFRLEESSLLAAFKSALAE----KFEMTWELILA-D------------KLKRVAILVSKEDHCLGDLLWR 104 (280)
T ss_pred EEEEEEEEeCCCCCCHHHHHHHHHHHHHH----HhCCEEEEecC-C------------CCcEEEEEEcCCChhHHHHHHH
Confidence 4444444444444456666666665 431 22455555432 2 2235788999999998887432
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcCCc---hHHHHcCCCCCCeeccC
Q 007374 263 RTLREWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFW 306 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~---~~A~~~Gi~~~~~f~~p 306 (606)
. +. |.. ..+-.++||++. ..|+++||| ++.++
T Consensus 105 ~------~~--g~l-~~~i~~visn~~~~~~~A~~~gIp---~~~~~ 139 (280)
T TIGR00655 105 W------YS--GEL-DAEIALVISNHEDLRSLVERFGIP---FHYIP 139 (280)
T ss_pred H------Hc--CCC-CcEEEEEEEcChhHHHHHHHhCCC---EEEcC
Confidence 1 11 221 123334556654 479999999 66554
No 95
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=31.76 E-value=25 Score=37.85 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=25.8
Q ss_pred CCceEEEec------cCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q 007374 217 RGRQLRFLA------NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWIST 271 (606)
Q Consensus 217 ~~~~i~fl~------nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~ 271 (606)
.+.+..|+| ++||+.+.+.+ .+++-+++++.--|...+ +..+.++.++
T Consensus 85 ~G~~pv~~Di~~~~~~id~~~~~~~i---~~~t~ai~~~h~~G~~~d----~~~i~~~~~~ 138 (363)
T PF01041_consen 85 AGAEPVFVDIDPETLNIDPEALEKAI---TPKTKAILVVHLFGNPAD----MDAIRAIARK 138 (363)
T ss_dssp TT-EEEEE-BETTTSSB-HHHHHHHH---HTTEEEEEEE-GGGB-------HHHHHHHHHH
T ss_pred hccEEEEEeccCCcCCcCHHHHHHHh---ccCccEEEEecCCCCccc----HHHHHHHHHH
Confidence 456788885 57777777765 355566666666666663 3445554444
No 96
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=31.01 E-value=1e+02 Score=33.48 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=28.8
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhc
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 237 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~ 237 (606)
.|.+||+||- |..++..........+ ....++..++ |+|+.++..+..
T Consensus 2 ~i~viGvGg~--G~niv~~l~~~~~~~~-~~~~~~~iav-ntD~~~L~~l~~ 49 (349)
T cd02202 2 RVLIIGVGQA--GGRIVDALNRHDKRSG-FGYCVGALAI-NTAKNDLKGLKH 49 (349)
T ss_pred EEEEEEeCCc--HHHHHHHHHHhCCCcC-CccceeEEEE-ECCHHHHHhhhc
Confidence 3789999998 8888876665321000 0001344444 689998876643
No 97
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=30.68 E-value=3e+02 Score=27.76 Aligned_cols=85 Identities=24% Similarity=0.329 Sum_probs=47.0
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 007374 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (606)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~ 265 (606)
.+++||.| .+|..++ +.|.. .+-.+..++ .|++...+.+.. ...+.+++. +++..++|.
T Consensus 2 ~iiIiG~G--~vG~~va-~~L~~--------~g~~Vv~Id-~d~~~~~~~~~~--~~~~~~v~g--d~t~~~~L~----- 60 (225)
T COG0569 2 KIIIIGAG--RVGRSVA-RELSE--------EGHNVVLID-RDEERVEEFLAD--ELDTHVVIG--DATDEDVLE----- 60 (225)
T ss_pred EEEEECCc--HHHHHHH-HHHHh--------CCCceEEEE-cCHHHHHHHhhh--hcceEEEEe--cCCCHHHHH-----
Confidence 58898888 2233333 33332 234677776 577777775542 123444444 455666642
Q ss_pred HHHHHHhcCCcccCCeEEEEcCCc-------hHHHH-cCCC
Q 007374 266 REWISTALGPSAVAKHMVAVSTNL-------TLVEK-FGID 298 (606)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~-------~~A~~-~Gi~ 298 (606)
+ .|-+. ...+||+|.+. .+|.+ +|++
T Consensus 61 -----~-agi~~-aD~vva~t~~d~~N~i~~~la~~~~gv~ 94 (225)
T COG0569 61 -----E-AGIDD-ADAVVAATGNDEVNSVLALLALKEFGVP 94 (225)
T ss_pred -----h-cCCCc-CCEEEEeeCCCHHHHHHHHHHHHhcCCC
Confidence 2 23332 47889999864 24544 7777
No 98
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=29.69 E-value=6.7e+02 Score=27.12 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=50.7
Q ss_pred CCccccC-----CCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHH-----HHhccCCCCC
Q 007374 174 GSWVGAT-----GKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVA-----KSITGLNPET 243 (606)
Q Consensus 174 g~~~g~~-----g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~-----~~l~~ld~~~ 243 (606)
|++.|++ |...+.+|.||=|...+-.-++.. -.+-.... -...++.-. +.|...+. .+-+..+.++
T Consensus 159 g~vLGC~~~~~~~~~~d~~l~vg~g~FH~~~~~l~~-~~~v~~~D--P~s~~~~~~-~~~~~~~l~rR~~~I~ka~~A~~ 234 (332)
T TIGR00322 159 GQVLGCNSEVLRGEQADAMVFIGDGRFHPLGAAIHT-EKEVFKYD--PYSGEFTRI-GEDAKQFVKVRALAISKARKGKK 234 (332)
T ss_pred ccccCCCcCCCCCCCCCEEEEEcCCcchHHHHHHHc-CCcEEEEC--CCCCceeEc-cccHHHHHHHHHHHHHHHhcCCE
Confidence 4566665 456678999997776544334321 11100000 000111111 12332221 1223345677
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCC
Q 007374 244 TLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN 288 (606)
Q Consensus 244 TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~ 288 (606)
.-+||.||+|-- +...++.+++.+++++ .++++.+.++
T Consensus 235 vGIlvgTl~~q~--~~~~~~~l~~ll~~~g-----kk~y~i~~~~ 272 (332)
T TIGR00322 235 FGVVLSSKGGQG--RLRLAKNLKKNLEEAG-----KTVLIILLSN 272 (332)
T ss_pred EEEEEecCccCC--CHHHHHHHHHHHHHcC-----CcEEEEEeCC
Confidence 889999998864 3333455666666653 2445554543
No 99
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=28.96 E-value=3.8e+02 Score=27.45 Aligned_cols=116 Identities=11% Similarity=0.116 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHcChHHHHHHHh-cCCCCC----CCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHH
Q 007374 95 ATLKTMDKLYQLAEAAQLNNKINRMY-NGEKIN----STENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEF 167 (606)
Q Consensus 95 i~~~~l~~l~~la~~~~l~~~~~~m~-~G~~iN----~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~f 167 (606)
++-+.++.|..+++...+.++-+.|. +--.|. .=|.+ ..|.. |...+-.....|+...+.+...++.+++.
T Consensus 2 ~~~~~L~~f~~v~e~~s~s~AA~~L~isQpavS~~I~~LE~~lg~~LF~--R~~r~~~lT~~G~~l~~~~~~~l~~~~~~ 79 (300)
T PRK11074 2 WSEYSLEVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFE--RRHRDVELTPAGEWFVKEARSVIKKMQET 79 (300)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEE--eCCCCceECccHHHHHHHHHHHHHHHHHH
Confidence 45677788888888887776666664 110000 00111 12222 44444344456788888888888888887
Q ss_pred HHHHHcCCccccCCCccceEEEEccccC---chhHHHHHHhhhcchhHHhhhCCceEEEec
Q 007374 168 SETIRSGSWVGATGKVLKDVVAVGIGGS---FLGPLFVHTALQTDLEAIECARGRQLRFLA 225 (606)
Q Consensus 168 a~~ir~g~~~g~~g~~i~~VV~IGIGGS---~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~ 225 (606)
.+.++.-. +.....|-||+..+ ++.|.++..+...+ ++.++.+..
T Consensus 80 ~~~~~~~~------~~~~g~l~Ig~~~~~~~~~l~~~l~~~~~~~-------p~i~i~i~~ 127 (300)
T PRK11074 80 RRQCQQVA------NGWRGQLSIAVDNIVRPDRTRQLIVDFYRHF-------DDVELIIRQ 127 (300)
T ss_pred HHHHHHHh------cCCCceEEEEEcCccchhHHHHHHHHHHHhC-------CCceEEEEe
Confidence 77765311 12345778888644 45555555555432 345566654
No 100
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.36 E-value=98 Score=32.79 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=33.2
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc---hHHHHcCCCCCCeeccC
Q 007374 243 TTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFW 306 (606)
Q Consensus 243 ~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~---~~A~~~Gi~~~~~f~~p 306 (606)
.-+.|.+|++|+..+.+..+. ++ |.. ..+-.++||+++ +.|+++||| ++.++
T Consensus 94 ~kiavl~Sg~g~nl~al~~~~------~~--~~l-~~~i~~visn~~~~~~~A~~~gIp---~~~~~ 148 (289)
T PRK13010 94 PKVVIMVSKFDHCLNDLLYRW------RM--GEL-DMDIVGIISNHPDLQPLAVQHDIP---FHHLP 148 (289)
T ss_pred eEEEEEEeCCCccHHHHHHHH------HC--CCC-CcEEEEEEECChhHHHHHHHcCCC---EEEeC
Confidence 357889999999998875331 11 221 123344566654 689999999 66654
No 101
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=28.33 E-value=2.2e+02 Score=28.22 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=48.9
Q ss_pred ceEEEEccccCchhHH-HHHHhhhcchhHHhhhCCceEEEe-ccCChHHH--HHHhccCC---CCCEEEEEEcCCCCCH-
Q 007374 185 KDVVAVGIGGSFLGPL-FVHTALQTDLEAIECARGRQLRFL-ANVDPIDV--AKSITGLN---PETTLVVVVSKTFTTA- 256 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~-~~~~aL~~~~~~~~~~~~~~i~fl-~nvDp~~l--~~~l~~ld---~~~TL~iviSKSGtT~- 256 (606)
+++|.|| ||+.+.|- .+.+.+... ..+.+++++ .+-++.++ .+-+..+. +.=.+.++.|......
T Consensus 103 ~~~llia-gG~Gitp~~s~~~~~~~~------~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~ 175 (231)
T cd06191 103 GRYLLVA-AGSGITPLMAMIRATLQT------APESDFTLIHSARTPADMIFAQELRELADKPQRLRLLCIFTRETLDSD 175 (231)
T ss_pred CcEEEEe-cCccHhHHHHHHHHHHhc------CCCCCEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEECCCCCCcc
Confidence 5688888 78887773 333333211 112344443 45555544 23333332 2334455666543221
Q ss_pred ---HHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc-------hHHHHcCCCCCCee
Q 007374 257 ---ETMLNARTLREWISTALGPSAVAKHMVAVSTNL-------TLVEKFGIDPNNAF 303 (606)
Q Consensus 257 ---ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-------~~A~~~Gi~~~~~f 303 (606)
.+... .+.+.+....+ .....|.|+.+. +.+++.|+++++++
T Consensus 176 ~~~~~~~~----~~~l~~~~~~~-~~~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~ 227 (231)
T cd06191 176 LLHGRIDG----EQSLGAALIPD-RLEREAFICGPAGMMDAVETALKELGMPPERIH 227 (231)
T ss_pred ccCCcccc----cHHHHHHhCcc-ccCCeEEEECCHHHHHHHHHHHHHcCCCHHHee
Confidence 11100 01122211111 112457788764 45677888876653
No 102
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=28.31 E-value=1.7e+02 Score=29.59 Aligned_cols=127 Identities=10% Similarity=0.151 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHHcChHHHHHHHhcC-CC----CCCCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHH
Q 007374 94 NATLKTMDKLYQLAEAAQLNNKINRMYNG-EK----INSTENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166 (606)
Q Consensus 94 ~i~~~~l~~l~~la~~~~l~~~~~~m~~G-~~----iN~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~ 166 (606)
+++-..++.|..+++...+.++-++|+-- -. |..=|.+ ..|.. |.+.+-.+...|+.+.+.++..++.+++
T Consensus 2 ~m~l~~L~~f~~v~e~~s~t~AA~~L~isqpavS~~I~~LE~~lg~~Lf~--R~~r~~~lT~~G~~l~~~a~~~l~~~~~ 79 (290)
T PRK10837 2 HITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFD--RVGKRLVVNEHGRLLYPRALALLEQAVE 79 (290)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHhCCCccHHHHHHHHHHHHhCCccEe--ecCCeEEECHhHHHHHHHHHHHHHHHHH
Confidence 36777888899999988888777777621 00 0000111 12322 5555544556688888888888888877
Q ss_pred HHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHh
Q 007374 167 FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236 (606)
Q Consensus 167 fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l 236 (606)
+.+..+. ....|.||+..+. +...+..++..... ..++.++.+......+.+..+.
T Consensus 80 ~~~~~~~----------~~g~l~i~~~~~~-~~~~~~~~l~~~~~---~~P~i~i~v~~~~~~~~~~~l~ 135 (290)
T PRK10837 80 IEQLFRE----------DNGALRIYASSTI-GNYILPAMIARYRR---DYPQLPLELSVGNSQDVINAVL 135 (290)
T ss_pred HHHHHHh----------hCCeEEEEecchh-HhhhhHHHHHHHHH---HCCCceEEEEECCHHHHHHHHH
Confidence 6554431 2346778888663 33333333332211 1134556665433333344443
No 103
>PRK10094 DNA-binding transcriptional activator AllS; Provisional
Probab=28.25 E-value=2.8e+02 Score=28.78 Aligned_cols=126 Identities=11% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcChHHHHHHHhcC-CC----CCCCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHH
Q 007374 95 ATLKTMDKLYQLAEAAQLNNKINRMYNG-EK----INSTENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEF 167 (606)
Q Consensus 95 i~~~~l~~l~~la~~~~l~~~~~~m~~G-~~----iN~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~f 167 (606)
+|-+.++.|..+++...+.++-++|.-- -. |+.=|.. ..|.. |....-.+...|+.+.+.....+.+++++
T Consensus 2 ~~~~~L~~f~~v~e~gs~s~AA~~L~iSQpavS~~I~~LE~~lg~~Lf~--R~~r~~~lT~~G~~l~~~a~~il~~~~~~ 79 (308)
T PRK10094 2 FDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFF--RTTRSVTLTAAGEHLLSQARDWLSWLESM 79 (308)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCEEEe--eCCCceeECHhHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888887776666511 00 0000111 12222 44444344566888888888888888888
Q ss_pred HHHHHcCCccccCCCccceEEEEccccC----chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHH
Q 007374 168 SETIRSGSWVGATGKVLKDVVAVGIGGS----FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS 235 (606)
Q Consensus 168 a~~ir~g~~~g~~g~~i~~VV~IGIGGS----~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~ 235 (606)
.+++.+-. . ....-+.||+.-. ++-|+++.++...+ ++.++.+.......-...+
T Consensus 80 ~~~~~~~~-~-----~~~g~l~Ig~~~~~~~~~~l~~~l~~~~~~~-------P~i~l~l~~~~~~~~~~~l 138 (308)
T PRK10094 80 PSELQQVN-D-----GVERQVNIVINNLLYNPQAVAQLLAWLNERY-------PFTQFHISRQIYMGVWDSL 138 (308)
T ss_pred HHHHHHhc-C-----CCCccEEEEecccccCHHHHHHHHHHHHHhC-------CCcEEEEEeehhhhHHHHH
Confidence 88775421 1 1233566676532 23355555544432 3456666654333333333
No 104
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.07 E-value=3.8e+02 Score=29.51 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhc
Q 007374 158 WKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQT 208 (606)
Q Consensus 158 ~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~ 208 (606)
.+.++++....+.++.... ..|.++++||..|||-.-+-.+.+.+++.-
T Consensus 134 ~EIv~Qv~~~~~~~~~~~~--~gg~~~~nvV~mGmGEPL~N~d~v~~al~~ 182 (372)
T PRK11194 134 SEIIGQVWRAAKIIGAAKV--TGQRPITNVVMMGMGEPLLNLNNVVPAMEI 182 (372)
T ss_pred HHHHHHHHHHHHHhhhccc--cCCcccceEEEecCCccccCHHHHHHHHHH
Confidence 3445555555444432100 013469999999999999999888887763
No 105
>PRK10537 voltage-gated potassium channel; Provisional
Probab=28.01 E-value=4.2e+02 Score=29.33 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=18.3
Q ss_pred CeEEEEcCCc---hHHHHcCCCCCCeeccCCCCCccc
Q 007374 280 KHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRY 313 (606)
Q Consensus 280 ~h~vaVT~~~---~~A~~~Gi~~~~~f~~pd~VGGRf 313 (606)
.++|+.+.+. +..++.|.+ ..-.|..+||+.
T Consensus 330 ~kIIa~v~~~~~~~~L~~~GaD---~VIsp~~l~g~~ 363 (393)
T PRK10537 330 VKTVAAVNDSKNLEKIKRVHPD---MIFSPQLLGSEL 363 (393)
T ss_pred CcEEEEECCHHHHHHHHhcCCC---EEECHHHHHHHH
Confidence 4666665543 455667776 555666666654
No 106
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=28.00 E-value=5e+02 Score=27.12 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=78.2
Q ss_pred hHHHHHHhhhcchhHHhhhCCceEEEec---cCChHHHHHHhccC--CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHh
Q 007374 198 GPLFVHTALQTDLEAIECARGRQLRFLA---NVDPIDVAKSITGL--NPETTLVVVVSKTFTTAETMLNARTLREWISTA 272 (606)
Q Consensus 198 Gp~~~~~aL~~~~~~~~~~~~~~i~fl~---nvDp~~l~~~l~~l--d~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~ 272 (606)
|.-.+.+.+.+..- ++.++.++++. -.+|+++.++.... +-+--++|++|--+.+.-+.. +|+.|.+.
T Consensus 14 g~s~~idl~lDErA---dRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~----ARE~l~~~ 86 (277)
T PRK00994 14 GMSPVIDLLLDERA---DREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKK----AREILKAA 86 (277)
T ss_pred chHHHHHHHHHhhh---cccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchH----HHHHHHhc
Confidence 44445555544321 24568888885 58899888666544 334467889998887777653 57766554
Q ss_pred cCCcccCCeEEEEcCCc-----hH--HHHcCCCCCCeeccCCCCCccchhhhchhhHHHHhhcCchHHHHHHHHH
Q 007374 273 LGPSAVAKHMVAVSTNL-----TL--VEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGA 340 (606)
Q Consensus 273 ~g~~~~~~h~vaVT~~~-----~~--A~~~Gi~~~~~f~~pd~VGGRfSv~SaVGLlPlala~G~d~~~~lL~GA 340 (606)
+ .-.|+||+.+ +. .+-|||= +....+-||-|--++-++=| |+ +..| +-+.|++.
T Consensus 87 ~------iP~IvI~D~p~~K~~d~l~~~g~GYI---ivk~DpMIGArREFLDP~EM---a~-fNaD-~~kVLa~t 147 (277)
T PRK00994 87 G------IPCIVIGDAPGKKVKDAMEEQGLGYI---IVKADPMIGARREFLDPVEM---AL-FNAD-VLKVLAGT 147 (277)
T ss_pred C------CCEEEEcCCCccchHHHHHhcCCcEE---EEecCccccchhhccCHHHH---HH-hhhh-HHHHHHhh
Confidence 2 3478899754 22 3346665 66777889999988888874 44 3667 56666643
No 107
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional
Probab=27.46 E-value=4.1e+02 Score=27.19 Aligned_cols=125 Identities=16% Similarity=0.205 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHh-cCCCCCC----CCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHH
Q 007374 97 LKTMDKLYQLAEAAQLNNKINRMY-NGEKINS----TENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSE 169 (606)
Q Consensus 97 ~~~l~~l~~la~~~~l~~~~~~m~-~G~~iN~----tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~ 169 (606)
-..++.|...++.-.+.++-++|. +--.|.. -|.. -.|.. |...+-.....|+.+.++++..+++++++.+
T Consensus 3 l~~L~~f~~v~~~gS~s~AA~~L~itQpavS~~i~~LE~~lg~~LF~--R~~r~~~lT~~G~~l~~~a~~~l~~~~~~~~ 80 (305)
T PRK11151 3 IRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLE--RTSRKVLFTQAGLLLVDQARTVLREVKVLKE 80 (305)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhCchhee--eCCCceeECccHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666655555553 1100000 0000 11211 4444333445678888888888888888877
Q ss_pred HHHcCCccccCCCccceEEEEccccC---chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHh
Q 007374 170 TIRSGSWVGATGKVLKDVVAVGIGGS---FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236 (606)
Q Consensus 170 ~ir~g~~~g~~g~~i~~VV~IGIGGS---~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l 236 (606)
.++... +.....|.||+-.| .+.+..+.++...+ ++.++.+..+.+...+..+.
T Consensus 81 ~~~~~~------~~~~g~l~i~~~~~~~~~~~~~~l~~~~~~~-------P~v~i~~~~~~~~~~~~~l~ 137 (305)
T PRK11151 81 MASQQG------ETMSGPLHIGLIPTVGPYLLPHIIPMLHQTF-------PKLEMYLHEAQTHQLLAQLD 137 (305)
T ss_pred HHHHhc------ccCCceEEEEecchhHHHHHHHHHHHHHHHC-------CCcEEEEEeCCHHHHHHHHH
Confidence 765421 12344667777654 45566665554432 34667776654444444444
No 108
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=27.12 E-value=1.6e+02 Score=32.71 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=19.2
Q ss_pred EEeeChhhhhhHHHHHHHHhhHhCCC
Q 007374 377 AILPYSQALEKFAPHIQQVSMESNGK 402 (606)
Q Consensus 377 ~llpY~~~L~~f~~w~qQL~mESlGK 402 (606)
.+=...+..+.++.|+-+-...+.|+
T Consensus 309 lmRtt~eE~~~~g~~ia~kLn~~~gp 334 (403)
T PF06792_consen 309 LMRTTPEENRQLGEFIAEKLNRAKGP 334 (403)
T ss_pred EeeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 34556777888888888877777765
No 109
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=26.42 E-value=2.3e+02 Score=27.33 Aligned_cols=59 Identities=25% Similarity=0.423 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHcCCc---cccCCCcc--ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCC
Q 007374 159 KVLDKIKEFSETIRSGSW---VGATGKVL--KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVD 228 (606)
Q Consensus 159 ~~l~~i~~fa~~ir~g~~---~g~~g~~i--~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvD 228 (606)
....++.+..+.+++|.| ....+..+ ++|-+||.|.. |-+++ +.++. -+.++++.+...
T Consensus 6 ~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~I--G~~vA-~~l~~--------fG~~V~~~d~~~ 69 (178)
T PF02826_consen 6 ALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRI--GRAVA-RRLKA--------FGMRVIGYDRSP 69 (178)
T ss_dssp HHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHH--HHHHH-HHHHH--------TT-EEEEEESSC
T ss_pred HHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCC--cCeEe-eeeec--------CCceeEEecccC
Confidence 345667777888899999 55555554 57999999843 43333 34443 256788887433
No 110
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=26.10 E-value=1.8e+02 Score=29.16 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=35.1
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCC-----------CCC-EEEEEEcC
Q 007374 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN-----------PET-TLVVVVSK 251 (606)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld-----------~~~-TL~iviSK 251 (606)
++.||+.||||-- +.+.|...... -.+..++..-.|.++..+++.|.... ..+ --++++++
T Consensus 67 ~d~ivIAGMGG~l-----I~~ILe~~~~~--~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~ 139 (205)
T PF04816_consen 67 VDTIVIAGMGGEL-----IIEILEAGPEK--LSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAER 139 (205)
T ss_dssp --EEEEEEE-HHH-----HHHHHHHTGGG--GTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEecCCHHH-----HHHHHHhhHHH--hccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEe
Confidence 6899999999873 55555432210 01123455557899999988887542 112 23667777
Q ss_pred CCCCHH
Q 007374 252 TFTTAE 257 (606)
Q Consensus 252 SGtT~E 257 (606)
++...+
T Consensus 140 ~~~~~~ 145 (205)
T PF04816_consen 140 GEEKPE 145 (205)
T ss_dssp SSS---
T ss_pred CCCCCC
Confidence 777653
No 111
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=26.08 E-value=1.8e+02 Score=30.72 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=24.0
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCC-ceEEEeccCChHHHHHH
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARG-RQLRFLANVDPIDVAKS 235 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~-~~i~fl~nvDp~~l~~~ 235 (606)
+.|+++|-||.+ +++.-+|... + .++++++ -+++..+++
T Consensus 127 ~~vlilGAGGAa---rAv~~aL~~~--------g~~~i~V~N-Rt~~ra~~L 166 (283)
T COG0169 127 KRVLILGAGGAA---RAVAFALAEA--------GAKRITVVN-RTRERAEEL 166 (283)
T ss_pred CEEEEECCcHHH---HHHHHHHHHc--------CCCEEEEEe-CCHHHHHHH
Confidence 579999999974 6666666532 3 3566654 444443333
No 112
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=26.08 E-value=1.9e+02 Score=27.62 Aligned_cols=52 Identities=6% Similarity=-0.001 Sum_probs=39.9
Q ss_pred CCcceeEEeCCCCCh-hhHHHHHHHHHHHHHHHHHhhccCCCCCcchHHhHHH
Q 007374 505 GNRPSLSLLLPSLNA-YNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSL 556 (606)
Q Consensus 505 gnrPs~~I~l~~l~~-~~LG~Lia~yE~~t~v~g~L~gINpFDQpGVE~gK~l 556 (606)
.+.+.+.|..+.-++ ..+-.|+++-.+..++.+.+.|+||..-|-+...|+.
T Consensus 101 ~~~~v~~v~~~g~s~l~rl~~li~l~d~aS~YLA~~~GvDP~~v~~I~~lK~~ 153 (155)
T PF10432_consen 101 RGVRVIEVEAEGGSPLERLASLIYLGDYASVYLALLYGVDPTPVPIIDELKER 153 (155)
T ss_dssp CSSEEEEE--SCCCHHHHHHHHHHHHHHHHHHHHHHCT--SS-TCCCHHHHHH
T ss_pred cCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhCcCCCcchHHHHHHhc
Confidence 456777787776665 5689999999999999999999999999999988864
No 113
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=25.94 E-value=4.3e+02 Score=22.81 Aligned_cols=68 Identities=22% Similarity=0.376 Sum_probs=33.0
Q ss_pred CceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCc---hHHHH
Q 007374 218 GRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL---TLVEK 294 (606)
Q Consensus 218 ~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~---~~A~~ 294 (606)
+.++++-|-.|+..+.++ .++..+++++... ...+++.....+++. . + ..++++...+. +..++
T Consensus 41 ~~~~i~gd~~~~~~l~~a--~i~~a~~vv~~~~---~d~~n~~~~~~~r~~----~-~---~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 41 GVEVIYGDATDPEVLERA--GIEKADAVVILTD---DDEENLLIALLAREL----N-P---DIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp TSEEEES-TTSHHHHHHT--TGGCESEEEEESS---SHHHHHHHHHHHHHH----T-T---TSEEEEEESSHHHHHHHHH
T ss_pred ccccccccchhhhHHhhc--CccccCEEEEccC---CHHHHHHHHHHHHHH----C-C---CCeEEEEECCHHHHHHHHH
Confidence 345555566666555544 2333344433332 445555544444432 1 1 24677766544 46677
Q ss_pred cCCC
Q 007374 295 FGID 298 (606)
Q Consensus 295 ~Gi~ 298 (606)
.|++
T Consensus 108 ~g~d 111 (116)
T PF02254_consen 108 AGAD 111 (116)
T ss_dssp TT-S
T ss_pred CCcC
Confidence 7776
No 114
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=25.23 E-value=59 Score=26.60 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=19.2
Q ss_pred EEEEcCCc--hHHHHcCCCCCCeeccCCCCCccchh
Q 007374 282 MVAVSTNL--TLVEKFGIDPNNAFAFWDWVGGRYSV 315 (606)
Q Consensus 282 ~vaVT~~~--~~A~~~Gi~~~~~f~~pd~VGGRfSv 315 (606)
+|+|+++. +.|++.||. +.|||.+
T Consensus 33 ~viI~dPe~S~IAk~l~i~----------~pG~YAl 58 (61)
T PRK08351 33 LVIIIDVENSRIAKKLGAK----------VPGKYAI 58 (61)
T ss_pred EEEEeCCcHhHHHHHhCCC----------CCCeEEE
Confidence 67788755 799999997 7788864
No 115
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=25.23 E-value=4e+02 Score=26.67 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhc
Q 007374 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQT 208 (606)
Q Consensus 161 l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~ 208 (606)
..-.+++|++|++-.+ ..+.||.|+=||-. -++.++++|.-
T Consensus 13 ~~~~~~lA~kI~~s~~------~PDvIiaiaRGG~~-pariLsd~L~~ 53 (192)
T COG2236 13 HRLCRALAEKIRASGF------KPDVIVAIARGGLI-PARILSDFLGV 53 (192)
T ss_pred HHHHHHHHHHHHHcCC------CCCEEEEEcCCcee-hHHHHHHHhCC
Confidence 3557788899985322 47899999999986 56778888854
No 116
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.94 E-value=1.4e+02 Score=31.58 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=33.3
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEE-EEcCCc---hHHHHcCCCCCCeeccCC
Q 007374 243 TTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMV-AVSTNL---TLVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 243 ~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~v-aVT~~~---~~A~~~Gi~~~~~f~~pd 307 (606)
.-+.|.+|.+|++.|.+..+. .. |. ..-.++ +||++. .+|+++||+ ++.++.
T Consensus 90 ~ri~vl~Sg~gsnl~al~~~~------~~--~~--~~~~i~~visn~~~~~~lA~~~gIp---~~~~~~ 145 (286)
T PRK06027 90 KRVVILVSKEDHCLGDLLWRW------RS--GE--LPVEIAAVISNHDDLRSLVERFGIP---FHHVPV 145 (286)
T ss_pred cEEEEEEcCCCCCHHHHHHHH------Hc--CC--CCcEEEEEEEcChhHHHHHHHhCCC---EEEecc
Confidence 357889999999999875431 11 11 122344 456553 579999999 666654
No 117
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=24.83 E-value=2.1e+02 Score=30.13 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=25.6
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCC-ceEEEeccCC--hHHHHHHhccC
Q 007374 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARG-RQLRFLANVD--PIDVAKSITGL 239 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~-~~i~fl~nvD--p~~l~~~l~~l 239 (606)
+.+++||-||.. +++.-+|.. .+ .++.+++-.. .+..+++.+.+
T Consensus 125 k~vlvlGaGGaa---rAi~~~l~~--------~g~~~i~i~nRt~~~~~ka~~la~~~ 171 (288)
T PRK12749 125 KTMVLLGAGGAS---TAIGAQGAI--------EGLKEIKLFNRRDEFFDKALAFAQRV 171 (288)
T ss_pred CEEEEECCcHHH---HHHHHHHHH--------CCCCEEEEEeCCccHHHHHHHHHHHh
Confidence 479999999994 566655542 23 3566665322 33444444444
No 118
>PRK15092 DNA-binding transcriptional repressor LrhA; Provisional
Probab=24.45 E-value=5.4e+02 Score=26.83 Aligned_cols=125 Identities=12% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHcChHHHHHHHh-cCC----CCCCCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHH
Q 007374 95 ATLKTMDKLYQLAEAAQLNNKINRMY-NGE----KINSTENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEF 167 (606)
Q Consensus 95 i~~~~l~~l~~la~~~~l~~~~~~m~-~G~----~iN~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~f 167 (606)
++-..++.|..++++..+.++-+.|+ +-- .|..=|.+ ..|. -|...+-.....|+.+.+.+...++.+++.
T Consensus 11 m~l~~L~~F~~v~e~gs~s~AA~~L~iSQpavS~~I~~LE~~lG~~LF--~R~~~~~~LT~~G~~l~~~a~~il~~~~~~ 88 (310)
T PRK15092 11 LDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELF--ARHGRNKLLTEHGIQLLGYARKILRFNDEA 88 (310)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCcceE--EECCCCceECHhHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888877777665 110 01111221 1121 254444445566788888888788887777
Q ss_pred HHHHHcCCccccCCCccceEEEEccccC---chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHh
Q 007374 168 SETIRSGSWVGATGKVLKDVVAVGIGGS---FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236 (606)
Q Consensus 168 a~~ir~g~~~g~~g~~i~~VV~IGIGGS---~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l 236 (606)
.+.+..+. ....|.||+..+ ++.|+++.++...+ +..++.+....+...+..+.
T Consensus 89 ~~~~~~~~--------~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~-------P~i~i~l~~~~~~~~~~~l~ 145 (310)
T PRK15092 89 CSSLMYSN--------LQGVLTIGASDDTADTILPFLLNRVSSVY-------PKLALDVRVKRNAFMMEMLE 145 (310)
T ss_pred HHHhcCCC--------ceeEEEEeCChHHHHHHHHHHHHHHHHHC-------CCcEEEEEECCcHHHHHHHh
Confidence 66664321 244677888754 33445554433322 34567776544544444443
No 119
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=24.35 E-value=7.3e+02 Score=26.37 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=67.6
Q ss_pred hHHHHHHHHHH----HHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCCh
Q 007374 154 VPEVWKVLDKI----KEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDP 229 (606)
Q Consensus 154 ~~~~~~~l~~i----~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp 229 (606)
...|+..+..| +..++++++|. .++.+|-|-| |---+.+|..-.+.+.- .+..-+-.+.. -+
T Consensus 36 ~~AV~~alp~Ia~Av~~~~~~l~~GG----------RLiY~GAGTS--GRLGvlDAsEcPPTfgv-~~e~ViglIAG-G~ 101 (298)
T COG2103 36 PLAVEAALPQIAAAVDIIAAALKQGG----------RLIYIGAGTS--GRLGVLDASECPPTFGV-PPELVIGLIAG-GE 101 (298)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC----------eEEEEcCCcc--cchhccchhhCCCCcCC-ChhHeeeeecC-CH
Confidence 33444444444 45556667763 4899999988 54556666653211000 00011111211 11
Q ss_pred HHH--------------HHHhccCC-CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEcCCch--HH
Q 007374 230 IDV--------------AKSITGLN-PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLT--LV 292 (606)
Q Consensus 230 ~~l--------------~~~l~~ld-~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~--~A 292 (606)
..+ .+-++.++ .++-.+|-|+-||+|.=.+..++++++ .+.+.|+|+.|+. ++
T Consensus 102 ~A~~~avEGaED~~~~g~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~----------~Ga~Ti~iacNp~s~i~ 171 (298)
T COG2103 102 EAILKAVEGAEDDEELGEADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQ----------RGATTIGIACNPGSAIS 171 (298)
T ss_pred HHHHHhhcCccccHHHHHHHHHHcCCCcCCEEEEEecCCCCchhhHHHHHHHh----------cCCeEEEeecCCCchhh
Confidence 222 23333333 245678889999999999999999886 3467899998773 44
Q ss_pred HHcCCC
Q 007374 293 EKFGID 298 (606)
Q Consensus 293 ~~~Gi~ 298 (606)
+.-.|+
T Consensus 172 ~~Ad~~ 177 (298)
T COG2103 172 RIADIA 177 (298)
T ss_pred hhcCcc
Confidence 443333
No 120
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=24.31 E-value=2.6e+02 Score=26.07 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=26.3
Q ss_pred CCCCCHHH--HHHHHHHHHHHHHhcCCcccCCeEEEEcCCch-----HHHHcCCCCCCee
Q 007374 251 KTFTTAET--MLNARTLREWISTALGPSAVAKHMVAVSTNLT-----LVEKFGIDPNNAF 303 (606)
Q Consensus 251 KSGtT~ET--l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~-----~A~~~Gi~~~~~f 303 (606)
|.|.|-.- -.|++.++++..+-. ......-++.||.+.+ ..+..|++++++|
T Consensus 82 ~~g~sR~~ll~~N~~i~~~~~~~i~-~~~p~~~vivvtNPvd~~t~~~~~~s~~~~~kvi 140 (141)
T PF00056_consen 82 KPGMSRLDLLEANAKIVKEIAKKIA-KYAPDAIVIVVTNPVDVMTYVAQKYSGFPPNKVI 140 (141)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHH-HHSTTSEEEE-SSSHHHHHHHHHHHHTSSGGGEE
T ss_pred cccccHHHHHHHhHhHHHHHHHHHH-HhCCccEEEEeCCcHHHHHHHHHHhhCcCcccCc
Confidence 44555433 456666766643311 1112234566666543 3445578877665
No 121
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=24.13 E-value=2.7e+02 Score=27.55 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=15.4
Q ss_pred ceEEEEccccCchhHHHHHHhh
Q 007374 185 KDVVAVGIGGSFLGPLFVHTAL 206 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL 206 (606)
.+|+++|.|| +|.+.+....
T Consensus 20 s~VlviG~gg--lGsevak~L~ 39 (198)
T cd01485 20 AKVLIIGAGA--LGAEIAKNLV 39 (198)
T ss_pred CcEEEECCCH--HHHHHHHHHH
Confidence 5699999998 7888775443
No 122
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=23.93 E-value=1.9e+02 Score=28.93 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=11.8
Q ss_pred ceEEEEccccCchhHH
Q 007374 185 KDVVAVGIGGSFLGPL 200 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~ 200 (606)
+.+|.|+ ||+.+.|-
T Consensus 110 ~~~v~ia-gG~GiaP~ 124 (238)
T cd06211 110 RPIIFIA-GGSGLSSP 124 (238)
T ss_pred CCEEEEe-CCcCHHHH
Confidence 5788888 88888873
No 123
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=23.84 E-value=8.9e+02 Score=29.12 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCCccceEEEEcccc--CchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEcCCCCCH
Q 007374 180 TGKVLKDVVAVGIGG--SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTA 256 (606)
Q Consensus 180 ~g~~i~~VV~IGIGG--S~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ 256 (606)
+|++. .|++.-+|+ ...|...+..+|.. .|.++..-. ..+|+.+.+....- .-.+++++|..+++.
T Consensus 579 ~g~rp-kV~LatlG~d~H~~ra~fv~~~l~~--------~GfeV~~~~~~~s~e~~v~aa~~~--~a~ivvlcs~d~~~~ 647 (714)
T PRK09426 579 EGRRP-RILVAKMGQDGHDRGAKVIATAFAD--------LGFDVDIGPLFQTPEEAARQAVEN--DVHVVGVSSLAAGHK 647 (714)
T ss_pred cCCCc-eEEEEecCCcchhHhHHHHHHHHHh--------CCeeEecCCCCCCHHHHHHHHHHc--CCCEEEEeccchhhH
Confidence 44444 476777774 45666777777653 567774332 46788776666542 334677777777777
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCeE-EEEcCC-----chHHHHcCCC
Q 007374 257 ETMLNARTLREWISTALGPSAVAKHM-VAVSTN-----LTLVEKFGID 298 (606)
Q Consensus 257 ETl~n~~~~~~~l~~~~g~~~~~~h~-vaVT~~-----~~~A~~~Gi~ 298 (606)
|. +..+.+.|++.+ . .++ |.+-.. .+..++.|++
T Consensus 648 e~---~~~l~~~Lk~~G-~----~~v~vl~GG~~~~~~~~~l~~aGvD 687 (714)
T PRK09426 648 TL---VPALIEALKKLG-R----EDIMVVVGGVIPPQDYDFLYEAGVA 687 (714)
T ss_pred HH---HHHHHHHHHhcC-C----CCcEEEEeCCCChhhHHHHHhCCCC
Confidence 75 455666666553 1 233 444422 2356777876
No 124
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional
Probab=23.39 E-value=3.4e+02 Score=27.70 Aligned_cols=117 Identities=16% Similarity=0.248 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHcChHHHHHHHhcC-C----CCCCCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHH
Q 007374 94 NATLKTMDKLYQLAEAAQLNNKINRMYNG-E----KINSTENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166 (606)
Q Consensus 94 ~i~~~~l~~l~~la~~~~l~~~~~~m~~G-~----~iN~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~ 166 (606)
.++-..++.|.++++...+.++-++|+-- - .|..-|.+ -.|. -|...+-.....|+.+.++++..++.+++
T Consensus 5 ~~~l~~l~~f~~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf--~R~~r~l~lT~~G~~l~~~~~~~l~~~~~ 82 (297)
T PRK11139 5 LPPLNALRAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLF--RRRNRSLLLTEEGQRYFLDIREIFDQLAE 82 (297)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHhCCChHHHHHHHHHHHHHhCchhe--EecCCceeECHhHHHHHHHHHHHHHHHHH
Confidence 45778888999999998888777777511 0 00000111 1121 14444433445688888888888999999
Q ss_pred HHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEe
Q 007374 167 FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFL 224 (606)
Q Consensus 167 fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl 224 (606)
+.+.+++.. .+..|.||...+. +...+...+..... ..+..++.+.
T Consensus 83 ~~~~~~~~~--------~~g~l~I~~~~~~-~~~~l~~~l~~f~~---~~p~i~i~l~ 128 (297)
T PRK11139 83 ATRKLRARS--------AKGALTVSLLPSF-AIQWLVPRLSSFNE---AHPDIDVRLK 128 (297)
T ss_pred HHHHHhcCC--------CCceEEEecChHH-HHHHHHHHHHHHHH---HCCCceEEEE
Confidence 988886531 2456788887543 44444444433221 1134556665
No 125
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.89 E-value=2.3e+02 Score=30.01 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=9.0
Q ss_pred EEEEccccCchhHHHHH
Q 007374 187 VVAVGIGGSFLGPLFVH 203 (606)
Q Consensus 187 VV~IGIGGS~LGp~~~~ 203 (606)
|.+||.|. .|.-+++
T Consensus 3 I~IIGaG~--VG~~~a~ 17 (308)
T cd05292 3 VAIVGAGF--VGSTTAY 17 (308)
T ss_pred EEEECCCH--HHHHHHH
Confidence 77888863 3444444
No 126
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.86 E-value=5.6e+02 Score=23.01 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=52.6
Q ss_pred CchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHHHHHHhccCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Q 007374 195 SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTAL 273 (606)
Q Consensus 195 S~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~l~~~l~~ld~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~ 273 (606)
-.+|..++..+|+. .+.+++++. ++.++++.+...+.++. .+.++|-..++ ...++.+.+.|++.+
T Consensus 12 H~lG~~~~~~~l~~--------~G~~vi~lG~~vp~e~~~~~a~~~~~d--~V~iS~~~~~~---~~~~~~~~~~L~~~~ 78 (122)
T cd02071 12 HDRGAKVIARALRD--------AGFEVIYTGLRQTPEEIVEAAIQEDVD--VIGLSSLSGGH---MTLFPEVIELLRELG 78 (122)
T ss_pred hHHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEcccchhh---HHHHHHHHHHHHhcC
Confidence 37899999888864 577899986 89999998888776543 33333333333 334556666666652
Q ss_pred CCcccCCeEEEEcC--C---chHHHHcCCC
Q 007374 274 GPSAVAKHMVAVST--N---LTLVEKFGID 298 (606)
Q Consensus 274 g~~~~~~h~vaVT~--~---~~~A~~~Gi~ 298 (606)
.. .-. +.+-. . .+..++.|++
T Consensus 79 -~~--~i~-i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 79 -AG--DIL-VVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred -CC--CCE-EEEECCCCHHHHHHHHHCCCC
Confidence 21 112 23331 1 2346688987
No 127
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.22 E-value=1.4e+02 Score=32.63 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhh
Q 007374 159 KVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQ 207 (606)
Q Consensus 159 ~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~ 207 (606)
+.++++....+.+.... ++++++||+.|||..-+.-+.+..|+.
T Consensus 133 EIv~Qv~~~~~~~~~~~-----~~~i~NVV~MGMGEPl~N~dnV~~a~~ 176 (349)
T COG0820 133 EIVEQVLLAAKALGEDF-----GRRISNVVFMGMGEPLLNLDNVVKALE 176 (349)
T ss_pred HHHHHHHHHHHhcCccc-----cceeeeEEEecCCchhhhHHHHHHHHH
Confidence 44556655555554321 568999999999999999888887775
No 128
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=22.21 E-value=3.7e+02 Score=26.45 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=11.7
Q ss_pred ceEEEEccccCchhHH
Q 007374 185 KDVVAVGIGGSFLGPL 200 (606)
Q Consensus 185 ~~VV~IGIGGS~LGp~ 200 (606)
+.+|.|| ||+.++|-
T Consensus 101 ~~~llia-gG~GiaP~ 115 (227)
T cd06213 101 APILCIA-GGSGLAPI 115 (227)
T ss_pred CcEEEEe-cccchhHH
Confidence 4688888 78888874
No 129
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=22.20 E-value=7e+02 Score=25.92 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=52.7
Q ss_pred cCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHHH-HHcCCccccCCCccceEEEEccccCc--h
Q 007374 121 NGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSET-IRSGSWVGATGKVLKDVVAVGIGGSF--L 197 (606)
Q Consensus 121 ~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~-ir~g~~~g~~g~~i~~VV~IGIGGS~--L 197 (606)
=||.||.| |+.+-.+++.-. .+.+.+.+.+ +.+| =+||=||.| +. -
T Consensus 4 IGErin~~--~~~~~~~~~~~d------------------~~~i~~~A~~~~~~G----------AdiIDVg~~-~~~~e 52 (261)
T PRK07535 4 IGERINGT--RKSIAEAIEAKD------------------AAFIQKLALKQAEAG----------ADYLDVNAG-TAVEE 52 (261)
T ss_pred EEeccchh--hHHHHHHHHcCC------------------HHHHHHHHHHHHHCC----------CCEEEECCC-CCchh
Confidence 48999998 666655554311 2223333333 4455 368888865 32 2
Q ss_pred hHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCCEEEEEEcCCCCC
Q 007374 198 GPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTT 255 (606)
Q Consensus 198 Gp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~TL~iviSKSGtT 255 (606)
.++.+..++..-. +..+.+ .-+|+.+|..+...++.+. ...+ +-|=||.+
T Consensus 53 E~~r~~~~v~~l~----~~~~~p-lsIDT~~~~v~eaaL~~~~-G~~i--INsIs~~~ 102 (261)
T PRK07535 53 EPETMEWLVETVQ----EVVDVP-LCIDSPNPAAIEAGLKVAK-GPPL--INSVSAEG 102 (261)
T ss_pred HHHHHHHHHHHHH----HhCCCC-EEEeCCCHHHHHHHHHhCC-CCCE--EEeCCCCC
Confidence 2333444443221 112333 4789999999999998765 3444 45555644
No 130
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=22.16 E-value=3e+02 Score=30.00 Aligned_cols=72 Identities=26% Similarity=0.279 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCccceEEEEc-cccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHH
Q 007374 157 VWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVG-IGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS 235 (606)
Q Consensus 157 ~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IG-IGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~ 235 (606)
+...+..|-+-+.+.....+...-...++.|.+|| .|. +|.-+ ..+|.. .+.+++.++.-+.....+.
T Consensus 71 ~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~Gl--mG~sl-A~~l~~--------~G~~V~~~d~~~~~~~~~~ 139 (374)
T PRK11199 71 IEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQ--LGRLF-AKMLTL--------SGYQVRILEQDDWDRAEDI 139 (374)
T ss_pred HHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCCh--hhHHH-HHHHHH--------CCCeEEEeCCCcchhHHHH
Confidence 44555555555444433222222222357899998 552 13222 233332 2456777763232344444
Q ss_pred hccC
Q 007374 236 ITGL 239 (606)
Q Consensus 236 l~~l 239 (606)
+...
T Consensus 140 ~~~a 143 (374)
T PRK11199 140 LADA 143 (374)
T ss_pred HhcC
Confidence 4443
No 131
>PRK09791 putative DNA-binding transcriptional regulator; Provisional
Probab=21.91 E-value=7.6e+02 Score=25.16 Aligned_cols=130 Identities=11% Similarity=0.242 Sum_probs=72.9
Q ss_pred cCCHHHHHHHHHHHHHcChHHHHHHHhcC-CCCC----CCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHH
Q 007374 94 NATLKTMDKLYQLAEAAQLNNKINRMYNG-EKIN----STENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166 (606)
Q Consensus 94 ~i~~~~l~~l~~la~~~~l~~~~~~m~~G-~~iN----~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~ 166 (606)
.+|-+-++.|..+++.-.+.++-++|.-- -.|. .=|+. -.|.. |.+..-.....|+...+.+...+..+++
T Consensus 4 ~~~l~~L~~f~~v~~~gs~s~AA~~L~isQ~avS~~i~~LE~~lG~~LF~--R~~r~~~lT~~G~~l~~~a~~~l~~~~~ 81 (302)
T PRK09791 4 QVKIHQIRAFVEVARQGSIRGASRMLNMSQPALTKSIQELEEGLAAQLFF--RRSKGVTLTDAGESFYQHASLILEELRA 81 (302)
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCCeEEE--EcCCCceECccHHHHHHHHHHHHHHHHH
Confidence 57778888888888888877776666411 0000 00211 12222 5555544556788889999989999999
Q ss_pred HHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHh
Q 007374 167 FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236 (606)
Q Consensus 167 fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l 236 (606)
+.+.+++.. .....-|.||+..+. +...+...+..... ..++.++.+.. .++.++.+.+
T Consensus 82 ~~~~~~~~~------~~~~g~l~I~~~~~~-~~~~l~~~l~~~~~---~~p~i~~~~~~-~~~~~~~~~l 140 (302)
T PRK09791 82 AQEDIRQRQ------GQLAGQINIGMGASI-ARSLMPAVISRFHQ---QHPQVKVRIME-GQLVSMINEL 140 (302)
T ss_pred HHHHHHHhh------cccceEEEEEechHH-HHhhhHHHHHHHHH---HCCCeEEEEEe-CChHHHHHHH
Confidence 888876421 113457788888662 33333333333221 11334555543 3444554444
No 132
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=21.02 E-value=2.8e+02 Score=29.91 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHcCCccc--cCCCcc--ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChH----
Q 007374 159 KVLDKIKEFSETIRSGSWVG--ATGKVL--KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPI---- 230 (606)
Q Consensus 159 ~~l~~i~~fa~~ir~g~~~g--~~g~~i--~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~---- 230 (606)
....++..+-+++|.|+|.. ..|..+ ++|-+||.|- +|.+++. -++. -+.++...|...+.
T Consensus 113 ~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~--IG~~va~-~l~a--------fgm~v~~~d~~~~~~~~~ 181 (324)
T COG0111 113 ALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGR--IGRAVAK-RLKA--------FGMKVIGYDPYSPRERAG 181 (324)
T ss_pred HHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCH--HHHHHHH-HHHh--------CCCeEEEECCCCchhhhc
Confidence 33445555555889999986 333221 4799999993 3444443 2222 25677777752222
Q ss_pred --------HHHHHhccCCCCCEEEEEEcCCCCCHHH
Q 007374 231 --------DVAKSITGLNPETTLVVVVSKTFTTAET 258 (606)
Q Consensus 231 --------~l~~~l~~ld~~~TL~iviSKSGtT~ET 258 (606)
.+.++|+..| .+++ ..=-|.||
T Consensus 182 ~~~~~~~~~Ld~lL~~sD---iv~l---h~PlT~eT 211 (324)
T COG0111 182 VDGVVGVDSLDELLAEAD---ILTL---HLPLTPET 211 (324)
T ss_pred cccceecccHHHHHhhCC---EEEE---cCCCCcch
Confidence 3566665544 3333 44557777
No 133
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=20.30 E-value=3e+02 Score=24.82 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=52.9
Q ss_pred hhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHHHhccCCCCC-EEEEEEcC-CCCCHHHHHHHHHHHHHHHHhcC
Q 007374 197 LGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPET-TLVVVVSK-TFTTAETMLNARTLREWISTALG 274 (606)
Q Consensus 197 LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~~l~~ld~~~-TL~iviSK-SGtT~ETl~n~~~~~~~l~~~~g 274 (606)
-|...+.+.|+ ..+.++.+++|.++..+...++.+.... .=.+++|. .|..-.--..++.+.+ +++
T Consensus 80 ~~~~~~L~~l~--------~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~----~~~ 147 (176)
T PF13419_consen 80 PGVRELLERLK--------AKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALE----KLG 147 (176)
T ss_dssp TTHHHHHHHHH--------HTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHH----HHT
T ss_pred hhhhhhhhhcc--------cccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHH----HcC
Confidence 35444555554 2468999999999999999998876551 11344443 2322221223333333 233
Q ss_pred CcccCCeEEEEcCCc---hHHHHcCCC
Q 007374 275 PSAVAKHMVAVSTNL---TLVEKFGID 298 (606)
Q Consensus 275 ~~~~~~h~vaVT~~~---~~A~~~Gi~ 298 (606)
-. .++++.|.+.. +.|++.|+.
T Consensus 148 ~~--p~~~~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 148 IP--PEEILFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp SS--GGGEEEEESSHHHHHHHHHTTSE
T ss_pred CC--cceEEEEeCCHHHHHHHHHcCCe
Confidence 22 36789999865 678999986
No 134
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=20.20 E-value=3.9e+02 Score=31.73 Aligned_cols=101 Identities=7% Similarity=0.116 Sum_probs=49.8
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHH-HHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-AKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l-~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
.++++++|-|-++ | -|.--+|+= .+ .. .+|- ..+...++ +--+..+++...+|++++..-+...+..+.
T Consensus 526 ~~~~~~lGrG~~y-~-~A~EgALKl-kE----~s--yi~a-e~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~~~~ 595 (670)
T PTZ00394 526 SSSILVLGRGYDL-A-TAMEAALKV-KE----LS--YVHT-EGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKSAV 595 (670)
T ss_pred CCcEEEEeCCCCH-H-HHHHHHHHH-HH----HH--HHHh-CcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHHHHH
Confidence 5789999999663 2 233333431 10 00 0111 11222222 222344667777777776543333455555
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcCCch-HHHHcCCCCCCeeccCC
Q 007374 263 RTLREWISTALGPSAVAKHMVAVSTNLT-LVEKFGIDPNNAFAFWD 307 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~~-~A~~~Gi~~~~~f~~pd 307 (606)
+.+++ . ..++++||+... ...+.. ..++.+|.
T Consensus 596 ~evk~----~------g~~vi~I~~~~~~~~~~~~---~~~i~vp~ 628 (670)
T PTZ00394 596 QQVKA----R------GGAVVVFATEVDAELKAAA---SEIVLVPK 628 (670)
T ss_pred HHHHH----c------CCeEEEEECCCcchhcccC---CcEEECCC
Confidence 55443 2 357899987542 111111 23678885
No 135
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=20.19 E-value=9e+02 Score=25.87 Aligned_cols=85 Identities=6% Similarity=0.065 Sum_probs=43.7
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHH-HHHhccCCCCCEEEEEEcCCCCCHHHHHHH
Q 007374 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-AKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (606)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l-~~~l~~ld~~~TL~iviSKSGtT~ETl~n~ 262 (606)
.+.+.+||-|-++ |.-+..-+|+= .+ .. .++- ..+...++ +--+..+++...+|++++ ++.|.+...
T Consensus 208 ~~~~~~lG~G~~y-~~A~~E~alKl-~E----~~--~i~a-~~~~~~Ef~HGP~~li~~~~~vi~l~~-~~~~~~~~~-- 275 (340)
T PRK11382 208 WPMIYTVAAGPLR-PLGYKEGIVTL-ME----FT--WTHG-CVIESGEFRHGPLEIVEPGVPFLFLLG-NDESRHTTE-- 275 (340)
T ss_pred CCcEEEEeCCCCH-HHHHHHHHHHH-HH----Hh--hhhc-ccccHHHhccChHHHhcCCceEEEEEc-CcchHHHHH--
Confidence 4689999998664 54333333331 10 00 1111 12343333 334455677777777776 676765332
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEcC
Q 007374 263 RTLREWISTALGPSAVAKHMVAVST 287 (606)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~ 287 (606)
.+.+.+++. ..|+++|+.
T Consensus 276 -~~~~~l~~~------~~~v~~I~~ 293 (340)
T PRK11382 276 -RAINFVKQR------TDNVIVIDY 293 (340)
T ss_pred -HHHHHHHHC------CCeEEEEEC
Confidence 334444432 357788875
No 136
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
Probab=20.16 E-value=8.3e+02 Score=24.72 Aligned_cols=125 Identities=11% Similarity=0.103 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHHcChHHHHHHHhcC-CC----CCCCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHH
Q 007374 94 NATLKTMDKLYQLAEAAQLNNKINRMYNG-EK----INSTENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166 (606)
Q Consensus 94 ~i~~~~l~~l~~la~~~~l~~~~~~m~~G-~~----iN~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~ 166 (606)
+++-..++.|+++++...+.++-+.|+-- -. |..=|.+ -.|.. |...+-.....|+...+.++..++.+++
T Consensus 2 ~m~l~~l~~f~~v~~~gS~s~AA~~L~isq~avS~~I~~LE~~lg~~LF~--R~~~~~~lT~~G~~l~~~a~~~l~~~~~ 79 (300)
T TIGR02424 2 RIKFRHLQCFVEVARQGSVKRAAEALHITQPAVSKTLRELEEILGTPLFE--RDRRGIRLTRYGELFLRHAGASLAALRQ 79 (300)
T ss_pred CccHHHHHHHHHHHHhCCHHHHHHHhCCChHHHHHHHHHHHHHhCCeEEE--EcCCCccccHhHHHHHHHHHHHHHHHHH
Confidence 56778888899999988887777777611 00 0000111 11211 4444444455678888888888888888
Q ss_pred HHHHHHcCCccccCCCccceEEEEccccC---chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHHHHH
Q 007374 167 FSETIRSGSWVGATGKVLKDVVAVGIGGS---FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAK 234 (606)
Q Consensus 167 fa~~ir~g~~~g~~g~~i~~VV~IGIGGS---~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~l~~ 234 (606)
+.+.+++-. . .....+.||+..+ .+-+.++......+ +...+.+... +..++.+
T Consensus 80 ~~~~~~~~~-~-----~~~~~l~I~~~~~~~~~~~~~~l~~~~~~~-------P~~~i~~~~~-~~~~~~~ 136 (300)
T TIGR02424 80 GVASLSQLG-E-----GEGPTVRIGALPTVAARLMPEVVKRFLARA-------PRLRVRIMTG-PNAYLLD 136 (300)
T ss_pred HHHHHHHhc-C-----CCCceEEEecccHHHHhhhHHHHHHHHHhC-------CCcEEEEEeC-chHHHHH
Confidence 877776521 1 1344678888754 33445554443322 2345555543 4444433
Done!