RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 007374
(606 letters)
>gnl|CDD|215351 PLN02649, PLN02649, glucose-6-phosphate isomerase.
Length = 560
Score = 1060 bits (2744), Expect = 0.0
Identities = 408/559 (72%), Positives = 465/559 (83%), Gaps = 1/559 (0%)
Query: 39 MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLK 98
+ LI DT WK L HV +IKKTHLR+L++D +RCQSM+ EFDGI LDYSRQ T +
Sbjct: 2 TKKTLLISDTPAWKRLVAHVYQIKKTHLRELLNDAERCQSMIAEFDGIYLDYSRQRVTDE 61
Query: 99 TMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVW 158
TM+ L+ LAEAA L KI M++GE INSTE+R+VLHVALRAPR A I DGKNVVPEVW
Sbjct: 62 TMELLFPLAEAANLFEKIEAMFSGEIINSTEDRAVLHVALRAPRLAPILVDGKNVVPEVW 121
Query: 159 KVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARG 218
+VLDKIK FSE +RSG W GATGK +VV++GIGGSFLGPLFVH AL TD EA++ A+G
Sbjct: 122 EVLDKIKAFSEDVRSGKWKGATGKRFTNVVSIGIGGSFLGPLFVHEALATDPEALKSAKG 181
Query: 219 RQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAV 278
R+LRFLANVDP+D+A+ I L+PETTLVVVVSKTFTTAETMLNART+R+W+ ALG AV
Sbjct: 182 RKLRFLANVDPVDIARQIAQLDPETTLVVVVSKTFTTAETMLNARTVRKWLRDALGGLAV 241
Query: 279 AKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLK 338
AKHMVAVSTNL LV KFGIDP NAF FWDWVGGRYSVCSAVG+LPLSLQYGF VVE+FL+
Sbjct: 242 AKHMVAVSTNLLLVNKFGIDPWNAFPFWDWVGGRYSVCSAVGLLPLSLQYGFDVVEEFLE 301
Query: 339 GAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSME 398
GA S+D+HF +AP ++NIPVLLGLLS+WN SFLG+PARAILPYSQAL KFAPHIQQ+ ME
Sbjct: 302 GAASMDEHFRTAPLKENIPVLLGLLSVWNSSFLGYPARAILPYSQALLKFAPHIQQLDME 361
Query: 399 SNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLK 458
SNGKGV +DG PLP GEIDFGEPGTNGQHSFYQLIHQGR IPCDFIGVV+SQQPV+L
Sbjct: 362 SNGKGVDLDGNPLPVNTGEIDFGEPGTNGQHSFYQLIHQGRNIPCDFIGVVRSQQPVHLW 421
Query: 459 -GEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSL 517
GE VSNHDELMSNFFAQPDALA GKTPEQL+ E V LIPHK F+GNRPSLS+LLP L
Sbjct: 422 LGEGVSNHDELMSNFFAQPDALAYGKTPEQLRAEGVPEELIPHKVFAGNRPSLSILLPEL 481
Query: 518 NAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGF 577
AY +GQLLA+YEHR+AV+GFIW INSFDQWGVELGK+LA +VR L+ +R K EP+EGF
Sbjct: 482 TAYTVGQLLALYEHRVAVQGFIWNINSFDQWGVELGKALAKRVRAVLNEARTKGEPVEGF 541
Query: 578 NFSTTTLLTRYLEASSDIP 596
N STT LL YL +
Sbjct: 542 NSSTTALLNHYLANKRALI 560
>gnl|CDD|185612 PTZ00430, PTZ00430, glucose-6-phosphate isomerase; Provisional.
Length = 552
Score = 873 bits (2259), Expect = 0.0
Identities = 327/550 (59%), Positives = 412/550 (74%), Gaps = 4/550 (0%)
Query: 45 ICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLY 104
+ + +K+L + +++KK HLRDL+ D +R +S++ EF G+ LD SRQ +T+ L
Sbjct: 3 LESLKSYKNLLSLAEKLKKVHLRDLLKDEERNKSLIKEFKGVTLDLSRQRLDEETLKLLI 62
Query: 105 QLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKI 164
+LAE A+L KI M+NGEKIN+TENR+VLH ALRAPR + DGKNV+ +V +VLD+I
Sbjct: 63 ELAEEAKLKEKIKDMFNGEKINTTENRAVLHTALRAPRGEKVVVDGKNVLEDVHEVLDRI 122
Query: 165 KEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFL 224
K+FS+ IRSG +G+TGK LK+V+ +GIGGS+LG FV+ AL+T EA E ++GR+LRFL
Sbjct: 123 KKFSDKIRSGEILGSTGKKLKNVICIGIGGSYLGTEFVYEALRTYGEAREASKGRKLRFL 182
Query: 225 ANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG-PSAVAKHMV 283
ANVDPIDV ++ GL+PE TLVV++SKTFTTAETMLNA+T+R+W+ + A++KH+
Sbjct: 183 ANVDPIDVRRATEGLDPEETLVVIISKTFTTAETMLNAKTVRQWLLDNIKSKEALSKHLC 242
Query: 284 AVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSI 343
AVSTNL L +FGI N F FWDWVGGR+SV SAVG+LPLS+Q+G+ +V++FL G +
Sbjct: 243 AVSTNLKLTSEFGIPDENVFGFWDWVGGRFSVTSAVGILPLSIQFGYDIVQQFLNGCHDM 302
Query: 344 DQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKG 403
D+HF +AP E+N+PVLLGL S +N +FLG+ AILPY QAL KF H+QQ+ MESNGK
Sbjct: 303 DEHFRTAPLEENLPVLLGLTSFYNSTFLGYNCVAILPYCQALLKFPAHVQQLLMESNGKS 362
Query: 404 VSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVS 463
V++DG L + GEI FGEPGTNGQHSFYQL+HQGRV+P +FIG KSQ P+ L GE VS
Sbjct: 363 VTLDGNTLDYNTGEIYFGEPGTNGQHSFYQLLHQGRVVPSEFIGFAKSQNPIKLLGEPVS 422
Query: 464 NHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIG 523
NHDELMSNFFAQPDALA GKT E+L+KE V LIPHK F GNRPSL LL P LN Y IG
Sbjct: 423 NHDELMSNFFAQPDALAFGKTYEELEKEGVPEELIPHKVFPGNRPSLLLLFPELNPYTIG 482
Query: 524 QLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEG---FNFS 580
QLLA+YEHR VEGF+W INSFDQWGVELGK LA VR +R P FN S
Sbjct: 483 QLLALYEHRTVVEGFLWNINSFDQWGVELGKVLAKDVRNLFKDNRSNSSPHAKESKFNGS 542
Query: 581 TTTLLTRYLE 590
T LL+ YL+
Sbjct: 543 TKRLLSYYLQ 552
>gnl|CDD|215867 pfam00342, PGI, Phosphoglucose isomerase. Phosphoglucose isomerase
catalyzes the interconversion of glucose-6-phosphate and
fructose-6-phosphate.
Length = 483
Score = 749 bits (1936), Expect = 0.0
Identities = 288/499 (57%), Positives = 350/499 (70%), Gaps = 18/499 (3%)
Query: 89 DYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINS 148
DYS+ + +T+ L +LAE A L+ K M+ GEKIN+TENR+VLHVALR + I
Sbjct: 1 DYSKNHINDETLSALLKLAEEAGLDAKREAMFLGEKINTTENRAVLHVALRNRSNRPIYV 60
Query: 149 DGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQT 208
DGK+V+PEV VLDK+K+F E IRSG+W G TGK + DVV +GIGGS LGP V AL+
Sbjct: 61 DGKDVMPEVDNVLDKMKDFFERIRSGAWKGYTGKAITDVVNIGIGGSDLGPRMVIEALKH 120
Query: 209 DLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREW 268
E + F++NVD +A+ + LNPETTL+ V SKTFTTAETM NAR+ REW
Sbjct: 121 YSE-----NALIVFFVSNVDGTHIAEVLKKLNPETTLINVASKTFTTAETMTNARSAREW 175
Query: 269 ISTALG-PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQ 327
+ LG SAVAKH VA+STN VEKFGIDP N FAFWDWVGGRYSV SA+G LP++L
Sbjct: 176 LLKKLGEKSAVAKHFVALSTNAKKVEKFGIDPENMFAFWDWVGGRYSVWSAIG-LPIALS 234
Query: 328 YGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEK 387
GF E+ L+GA S+D+HF S P EKN P LL L+ +W +F G AILPY Q L +
Sbjct: 235 IGFENFEELLEGAASMDKHFSSTPLEKNAPYLLALVGVWYYNFFGAQTHAILPYDQYLHR 294
Query: 388 FAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFI 446
FA ++QQ+ MESNGKGV DGV + G IDFGEPGTNGQHSFYQLIHQG R+IPCDFI
Sbjct: 295 FAAYLQQLFMESNGKGVDQDGVLVDHFTGSIDFGEPGTNGQHSFYQLIHQGTRLIPCDFI 354
Query: 447 GVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGN 506
VKSQ E + +H ELMSNFFAQ +ALA GKTPE++ KE A L+PHKTF+GN
Sbjct: 355 LAVKSQN------ENLVHHKELMSNFFAQTEALAYGKTPEEVNKEAFAGTLLPHKTFTGN 408
Query: 507 RPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHA 566
RPSLS+LLP L Y +G L+A YEH+ V+G +WGINSFDQWGVELGK LA + +LH
Sbjct: 409 RPSLSILLPELTPYTLGALIAFYEHKCFVQGALWGINSFDQWGVELGKVLAKAILPKLHG 468
Query: 567 SRMKREPIEGFNFSTTTLL 585
SR + GF+ ST L+
Sbjct: 469 SRK----VGGFDSSTNGLI 483
>gnl|CDD|234679 PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.
Length = 548
Score = 745 bits (1926), Expect = 0.0
Identities = 261/555 (47%), Positives = 355/555 (63%), Gaps = 27/555 (4%)
Query: 48 TEPWKDLKNHVQEIKKTHLRDL-MSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQL 106
T W+ L+ H EIK HLRDL +D DR + + G+LLDYS+ T +T+ L L
Sbjct: 8 TPAWQALQAHADEIKDVHLRDLFAADPDRFERFSLTAGGLLLDYSKNRITDETLALLLDL 67
Query: 107 AEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166
A A L + M+ GEKIN+TE+R+VLH ALR P + I DG++V+PEV VL ++K
Sbjct: 68 AREAGLEGARDAMFAGEKINTTEDRAVLHTALRNPSNTPILVDGQDVMPEVHAVLARMKA 127
Query: 167 FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLAN 226
F+E +RSG W G TGK + DVV +GIGGS LGP+ V AL+ G ++ F++N
Sbjct: 128 FAEAVRSGEWKGYTGKAITDVVNIGIGGSDLGPVMVTEALRPY-----ADPGLRVHFVSN 182
Query: 227 VDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGP-SAVAKHMVAV 285
VD +A+++ L+PETTL +V SKTFTT ET+ NA + R+W A G +AVAKH VAV
Sbjct: 183 VDGAHLAETLKKLDPETTLFIVASKTFTTQETLTNAHSARDWFLAAGGDEAAVAKHFVAV 242
Query: 286 STNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQ 345
STN V +FGIDP+N F FWDWVGGRYS+ SA+G L ++L G E+ L GA ++D+
Sbjct: 243 STNAEAVAEFGIDPDNMFGFWDWVGGRYSLWSAIG-LSIALAIGPDNFEELLAGAHAMDE 301
Query: 346 HFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVS 405
HF +AP EKN+PVLL L+ +W +F G + A+LPY Q L +F ++QQ+ MESNGK V
Sbjct: 302 HFRTAPLEKNLPVLLALIGVWYRNFFGAQSHAVLPYDQYLHRFPAYLQQLEMESNGKSVD 361
Query: 406 IDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSN 464
DG P+ ++ G I +GEPGTNGQH+F+QL+HQG +++P DFI + P + +
Sbjct: 362 RDGTPVDYQTGPIIWGEPGTNGQHAFFQLLHQGTKLVPADFIAPAQPHNP------LGDH 415
Query: 465 HDELMSNFFAQPDALAVGKTPEQLQKE--------NVAPHLIPHKTFSGNRPSLSLLLPS 516
HD L++N FAQ +AL GKT E+++ E A L PHK F GNRPS ++LL
Sbjct: 416 HDLLLANCFAQTEALMFGKTAEEVRAELRAKGLDEAEAEELAPHKVFPGNRPSTTILLDR 475
Query: 517 LNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEG 576
L + +G L+A+YEH++ V+G IWGINSFDQWGVELGK LA ++ +L
Sbjct: 476 LTPFTLGALIALYEHKVFVQGVIWGINSFDQWGVELGKQLAKRILPELEGD----SEASA 531
Query: 577 FNFSTTTLLTRYLEA 591
+ ST L+ RY
Sbjct: 532 HDSSTNGLINRYRAW 546
>gnl|CDD|223244 COG0166, Pgi, Glucose-6-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 446
Score = 445 bits (1146), Expect = e-152
Identities = 206/483 (42%), Positives = 279/483 (57%), Gaps = 54/483 (11%)
Query: 85 GILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDA 144
G+LLDYS+ +T++ L +LA+ A L KI+ M+ G KIN TE R+VLH ALR P
Sbjct: 3 GLLLDYSKNLLNDETLELLLELADEADLAEKIDAMFKGAKIN-TEGRAVLHTALRMP--- 58
Query: 145 AINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHT 204
EV +VL ++K F++ +RSG + D+V +GIGGS LGP V
Sbjct: 59 -----------EVDEVLKRMKAFADDVRSGK--------ITDIVNIGIGGSDLGPRAVTE 99
Query: 205 ALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNART 264
AL G ++ F++NVDP +A+ + L+PETTL +V+SK+ TT ET+ N R
Sbjct: 100 AL-----RPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRL 154
Query: 265 LREWISTALGPSAVAKHMVAVSTNLTLVEK-FGIDPNNAFAFWDWVGGRYSVCSAVGVLP 323
R+W+ A KH VA STN + G + F DWVGGRYSV SAVG+LP
Sbjct: 155 ARKWLEKKE--EAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVGGRYSVLSAVGLLP 212
Query: 324 LSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQ 383
L+L G ++ L+GA + D+HF + P E+N+ VL L+ IW +F G ILPY
Sbjct: 213 LAL--GGIDFKELLEGAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDP 270
Query: 384 ALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIP 442
LE F +QQ++MESNGK V G + F I +GEPGTNGQH+F+QL+HQG + P
Sbjct: 271 YLEYFPAWLQQLNMESNGKSVKGIGPEVNFHTDPISWGEPGTNGQHAFFQLLHQGTDLKP 330
Query: 443 CDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKT 502
DFI + +S + + +HD+L+SNF AQ +ALA GKT
Sbjct: 331 ADFIEIEESIEDLD------GHHDKLLSNFLAQTEALAFGKTLLAHTA------------ 372
Query: 503 FSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 562
GNRPS +LL L Y +G L+A+YEH+ V+G +WGINSFDQ GVELGK LA +
Sbjct: 373 --GNRPSNLILLRELTPYTLGALIALYEHKTFVQGVLWGINSFDQPGVELGKKLAFALLG 430
Query: 563 QLH 565
+L
Sbjct: 431 KLG 433
>gnl|CDD|237608 PRK14095, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 533
Score = 415 bits (1070), Expect = e-139
Identities = 198/526 (37%), Positives = 304/526 (57%), Gaps = 37/526 (7%)
Query: 47 DTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQL 106
D E +K L+ E L ++S+ +R + + +G +Y+ + + + L L
Sbjct: 9 DLESFKILQELAPEPLDLTLPGVLSE-ERIKKYSLSGEGFTYNYATERVDDRILAALQNL 67
Query: 107 AEAAQLNNKINRMYNGEKINS-----TENRSVLHVALRAP-RDAAINSDGKNVVPEVWKV 160
A+ A+L K+ M NG IN +ENR VLH A R D+ + + +++ +
Sbjct: 68 ADEAELIEKMKAMQNGAVINRIEGFPSENRPVLHTATRGQVGDSVLTDEAEDMAEFSKRE 127
Query: 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQ 220
L+++ EF + +RSG + GK VV +GIGGS LGP ++ AL+ + ++
Sbjct: 128 LERLAEFLKKVRSGEIKNSNGKKFTTVVQIGIGGSDLGPKALYLALKN-----YAKKDKR 182
Query: 221 LRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAK 280
+ F++NVDP D A+ ++ ++ TL +VVSK+ TT ET N +R+ + A G K
Sbjct: 183 VHFISNVDPDDAAEVLSEIDLAKTLFIVVSKSGTTLETAANEEFVRDALKKA-GLDY-KK 240
Query: 281 HMVAVSTNLTLVEKFGIDPNN---AFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFL 337
H +AV++ + ++ D + F WD +GGR+S S VG + L +GF V ++FL
Sbjct: 241 HFIAVTSEGSPMD----DESGYLEVFHMWDSIGGRFSSTSMVGGVVLGFAFGFEVFKEFL 296
Query: 338 KGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSM 397
KGA ++D+ ++ +N+P+L L+ IWN +FLG+P A++PYSQALE+F H+QQ+ M
Sbjct: 297 KGAAAMDKAALNPNIRENLPLLAALIGIWNRNFLGYPTTAVIPYSQALERFPAHLQQLDM 356
Query: 398 ESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGR-VIPCDFIGVVKSQ--QP 454
ESNGK V+ G P+ F+ G I +GEPGTNGQHSF+QL+HQG ++P +FIG +SQ Q
Sbjct: 357 ESNGKSVNRFGEPINFKTGPIIWGEPGTNGQHSFFQLLHQGTDIVPVEFIGFKESQLGQD 416
Query: 455 VYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLL 514
+ ++G ++ +L +N AQ ALA GK P+K F GNRPS L+
Sbjct: 417 IVIQGS--TSQQKLFANLIAQIIALACGKENTN-----------PNKNFKGNRPSSLLVA 463
Query: 515 PSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQV 560
L Y +G LLA YE+++ +GF W INSFDQ GV+LGK LA Q+
Sbjct: 464 KQLTPYTLGALLAHYENKVMFQGFCWNINSFDQEGVQLGKVLANQI 509
>gnl|CDD|240147 cd05016, SIS_PGI_2, Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based
on the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of glucose
6-phosphate to fructose 6-phosphate. As an extracellular
protein, PGI also has functions equivalent to
neuroleukin (NLK), autocrine motility factor (AMF), and
maturation factor (MF). Evidence suggests that PGI, NLK,
AMF, and MF are closely related or identical. NLK is a
neurotrophic growth factor that promotes regeneration
and survival of neurons. The dimeric form of NLK has
isomerase function, whereas its monomeric form carries
out neurotrophic activity. AMF is a cytokine that
stimulates cell migration and metastasis. MF mediates
the differentiation of human myeloid leukemic HL-60
cells to terminal monocytic cells.
Length = 164
Score = 236 bits (605), Expect = 3e-75
Identities = 86/188 (45%), Positives = 108/188 (57%), Gaps = 25/188 (13%)
Query: 374 PARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQ 433
A+LPYSQ LE+F +QQ+ MESNGK V+ DG P G I +G PGTN QHSF+Q
Sbjct: 1 KTHALLPYSQRLERFPAWLQQLDMESNGKSVTRDGEDYP--TGPIPWGAPGTNDQHSFFQ 58
Query: 434 LIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKEN 492
LIHQG + P DFI V K Q V + HD L++N A +AL
Sbjct: 59 LIHQGTKDKPVDFIAVKKPQNDVLDYLAGKTLHDLLLANCLATREALM------------ 106
Query: 493 VAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVEL 552
F G RPS +++LP L Y +G LLA+YEH+ AV+G + GIN FDQ GVEL
Sbjct: 107 ----------FPGGRPSNTIVLPELTPYTLGALLALYEHKTAVQGALLGINPFDQPGVEL 156
Query: 553 GKSLATQV 560
GK LA ++
Sbjct: 157 GKKLAKKI 164
>gnl|CDD|240146 cd05015, SIS_PGI_1, Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based
on the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of glucose
6-phosphate to fructose 6-phosphate. As an extracellular
protein, PGI also has functions equivalent to
neuroleukin (NLK), autocrine motility factor (AMF), and
maturation factor (MF). Evidence suggests that PGI, NLK,
AMF, and MF are closely related or identical. NLK is a
neurotrophic growth factor that promotes regeneration
and survival of neurons. The dimeric form of NLK has
isomerase function, whereas its monomeric form carries
out neurotrophic activity. AMF is a cytokine that
stimulates cell migration and metastasis. MF mediates
the differentiation of human myeloid leukemic HL-60
cells to terminal monocytic cells.
Length = 158
Score = 205 bits (523), Expect = 4e-63
Identities = 80/170 (47%), Positives = 109/170 (64%), Gaps = 14/170 (8%)
Query: 158 WKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECAR 217
L++IKEF+E +RSG K + DVV +GIGGS LGP V+ AL+
Sbjct: 1 RAELERIKEFAEKVRSG-------KKITDVVVIGIGGSDLGPRAVYEALKP-----YFKG 48
Query: 218 GRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSA 277
G +L F++NVDP D+A+ + L+PETTL +V+SK+ TT ET+ NAR REW+ A G
Sbjct: 49 GLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTTLETLANARLAREWLEEAGG-DD 107
Query: 278 VAKHMVAVSTNLTLVEK-FGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSL 326
+AKH VA++ N + + K GI+ N F DWVGGR+SV S+VG LPL+L
Sbjct: 108 LAKHFVAITDNGSGLLKKAGIEGLNTFEIPDWVGGRFSVLSSVGGLPLAL 157
>gnl|CDD|237609 PRK14096, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 528
Score = 186 bits (475), Expect = 4e-52
Identities = 147/491 (29%), Positives = 229/491 (46%), Gaps = 65/491 (13%)
Query: 85 GILLDYSRQN---ATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAP 141
G+ LD SR N A L++++ +Q A AA + + G N E R V H LR P
Sbjct: 21 GLWLDISRMNFDDAFLESLEPKFQKAFAA-----MAALEAGAIANPDEGRMVGHYWLRNP 75
Query: 142 RDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLF 201
+ A + + E+ + L +I+ F+ + SG+ G+ DV+ +GIGGS LGP F
Sbjct: 76 -ELAPTPEIRA---EITETLAQIEAFAAKVHSGTIKPPNGEKFTDVLWIGIGGSALGPQF 131
Query: 202 VHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPE--TTLVVVVSKTFTTAET- 258
V ALQ + G + F+ N DP + + + L TTLVVV+SK+ T ET
Sbjct: 132 VAEALQ------PNSDGLNIHFIDNTDPDGIDRVLAELGDRLATTLVVVISKSGGTPETR 185
Query: 259 --MLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPN--NAFAFWDWVGGRYS 314
ML A+ E A G A H VA++ + +++ F WDWVGGR S
Sbjct: 186 NGMLEAKAAYE----AAGLD-FASHAVAITMKGSKLDQLAQSEGWLARFPMWDWVGGRTS 240
Query: 315 VCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHP 374
SAVG+LP +LQ G + FL GA +D+ + N LL L W + G
Sbjct: 241 ETSAVGLLPAALQ-GIDIRA-FLAGAKQMDEATRVPDLKNNPAALLALA--WYYAGDGKG 296
Query: 375 AR--AILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFY 432
+ +LPY L F+ ++QQ+ MES GK + +DG + G +G G+ QH++
Sbjct: 297 KKDMVVLPYKDRLLLFSRYLQQLVMESLGKELDLDGNVV--HQGIAVYGNKGSTDQHAYV 354
Query: 433 QLIHQGRVIP---CDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQ 489
Q + G + FI V++ +Q ++ E + +S F T + L
Sbjct: 355 QQLRDG--VDNFFVTFIEVLEDRQGSSIEVEPGVTSGDYLSGFLQ--------GTRQAL- 403
Query: 490 KENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWG 549
+ R S+++ +P +N +G L+A++E + + + IN++ Q G
Sbjct: 404 -------------YENGRQSITITIPEVNPRTLGALIALFERAVGLYASLVNINAYHQPG 450
Query: 550 VELGKSLATQV 560
VE GK A +
Sbjct: 451 VEAGKKAAAAI 461
>gnl|CDD|179193 PRK00973, PRK00973, glucose-6-phosphate isomerase; Provisional.
Length = 446
Score = 164 bits (416), Expect = 2e-44
Identities = 125/438 (28%), Positives = 187/438 (42%), Gaps = 75/438 (17%)
Query: 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQ---TDLEAIECAR 217
LD +E E ++ +VV +GIGGS LG L +H AL + + E
Sbjct: 58 LDSYEELKEWSKN----------FDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERN 107
Query: 218 GRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSA 277
G ++ L NVDP A + ++ E TL V+SK+ TAET+ N +R + LG
Sbjct: 108 GPRVFVLDNVDPEKTASILDVIDLEKTLFNVISKSGNTAETLANYLIIRGILE-KLGLD- 165
Query: 278 VAKHMVAVSTNLT------LVEKFGID----PNNAFAFWDWVGGRYSVCSAVGVLPLSLQ 327
KH+V T+ + EK G P N VGGR+SV + VG+ P
Sbjct: 166 PKKHLVFT-TDPEKGKLKKIAEKEGYRTLEIPEN-------VGGRFSVLTPVGLAPA--- 214
Query: 328 YGFSV-VEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALE 386
+ +E+ L+GA +D+ KN +L L+ + G ++PYS+ L+
Sbjct: 215 AALGIDIEELLEGAKEMDKICEKEDIFKNPALLNALIHYLYYN-RGKNISVMMPYSERLK 273
Query: 387 KFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCD-- 444
F +Q+ ES GK GV G+ G QHS QL +G P D
Sbjct: 274 YFGDWYRQLWAESLGK----KGV------GQTPVKALGATDQHSQLQLYMEG---PKDKI 320
Query: 445 --FIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKT 502
F+ V K ++ V E+ ++++ + L+ EQ E
Sbjct: 321 ITFLKVEKYRRDV----EIPYEYEDIEELSYLGGHKLSELINSEQKGTEIALTE------ 370
Query: 503 FSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 562
RP++ + L LN Y +GQL +YE + A G + IN+FDQ GVELGK +
Sbjct: 371 --NGRPNVKITLDELNEYTVGQLFYMYEMQTAFMGELLNINAFDQPGVELGKKIT----- 423
Query: 563 QLHASRMKREPIEGFNFS 580
+A + R E
Sbjct: 424 --YA-LLGRSGYEEEKKE 438
>gnl|CDD|235168 PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.
Length = 410
Score = 125 bits (316), Expect = 4e-31
Identities = 116/391 (29%), Positives = 185/391 (47%), Gaps = 68/391 (17%)
Query: 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPET 243
+K++V +GIGGS LG +++ L+ + ++L FL N DPI + K+++ +N E
Sbjct: 58 IKNIVVIGIGGSSLGVKAIYSFLKNEKN-----NKKELHFLENTDPISINKTLSKINLEN 112
Query: 244 TLVVVVSKTFTTAETMLNARTLREWISTALGPSA-VAKHMVAVSTNLTLVEKFGIDPNNA 302
TL +V+SK+ TT ET+ ++ +++ + + K+ + ++ + +E+F NN
Sbjct: 113 TLFIVISKSGTTIETI----SIFKYLLSHFKLDQELKKNFLFITDPDSKLEQFA-KENNI 167
Query: 303 FAFW--DWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLL 360
F VGGR+SV SAVG++PL+L G+ ++ L+GA + F + +
Sbjct: 168 KCFNIPKNVGGRFSVLSAVGIVPLALC-GYD-IKALLEGAKACKDSFFEQKEDHILKKAY 225
Query: 361 GLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDG----VPL-PFEA 415
+ N + + YS AL+ F Q+ ES GK G V L P
Sbjct: 226 FYATHKN----AYNINVLFSYSDALKGFNDWYVQLWGESLGK---KQGYKTRVGLTP--I 276
Query: 416 GEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVY-----LKG----EVVSNH 465
G I G+ QHSF QLI +G R FI + Q LKG + V+
Sbjct: 277 GLI-----GSRDQHSFLQLIMEGPRDKTVTFIKIKDFQNAPKIPNISLKGLESLDFVNGV 331
Query: 466 D--ELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIG 523
EL++ AQ DA T E L E++ +I L L+ ++IG
Sbjct: 332 SFNELIN---AQCDA-----TMEALIAEDIPVDVI--------------TLEKLDEFSIG 369
Query: 524 QLLAIYEHRIAVEGFIWGINSFDQWGVELGK 554
L+ YE + G + GIN++DQ GVE+GK
Sbjct: 370 YLIYYYELLTSAVGKMLGINTYDQPGVEVGK 400
>gnl|CDD|184504 PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 448
Score = 92.2 bits (230), Expect = 7e-20
Identities = 114/432 (26%), Positives = 175/432 (40%), Gaps = 109/432 (25%)
Query: 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTD---LEAIECAR 217
+IK+ +E I+S S +V +GIGGS+LG L L E +
Sbjct: 59 FARIKKAAEKIKSDS---------DVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRK 109
Query: 218 GRQLRFLAN-------VDPIDVAK----SITGLNPETTLVVVVSKTFTTAETMLNARTLR 266
Q+ F N D ++ K SI V+SK+ TT E + R +
Sbjct: 110 APQIIFAGNSISSTYLADLLEYLKDKDFSI----------NVISKSGTTTEPAIAFRIFK 159
Query: 267 EWISTALGPSAVAKHMVAVSTN------LTLV-----EKFGIDPNNAFAFWDWVGGRYSV 315
E + G K + A T+ TL E F I P++ VGGR+SV
Sbjct: 160 ELLEKKYGKEEAKKRIYAT-TDKAKGALKTLADAEGYETFVI-PDD-------VGGRFSV 210
Query: 316 CSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPA 375
+AVG+LP+++ G ++ +KGA + + S+ +N
Sbjct: 211 LTAVGLLPIAVA-GID-IDALMKGAADARKDYSSSDLSENPAYQYAA------------V 256
Query: 376 RAILPYSQ-----ALEKFAPHIQ-------QVSMESNGK-GVSIDGVPLPFEAGEIDFGE 422
R IL Y + L + P +Q Q+ ES GK I F A +F
Sbjct: 257 RNIL-YRKGYTTEILVNYEPSLQYFSEWWKQLFGESEGKDQKGI------FPAS-ANF-- 306
Query: 423 PGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVY---LKGEVVSNHDELMSNFFAQPDAL 479
+ HS Q I +GR F V+K ++P + E + D L N+ A
Sbjct: 307 --STDLHSLGQYIQEGRRNL--FETVIKVEKPRKDLTIP-EDEEDLDGL--NYLA----- 354
Query: 480 AVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFI 539
GKT + + K+ L+ H G P++ + +P L+ Y G L+ +E A+ G++
Sbjct: 355 --GKTVDFVNKKAFEGTLLAH--TDGGVPNIVVNIPELDEYTFGYLVYFFEKACAISGYL 410
Query: 540 WGINSFDQWGVE 551
G+N FDQ GVE
Sbjct: 411 LGVNPFDQPGVE 422
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 81.6 bits (202), Expect = 5e-16
Identities = 106/425 (24%), Positives = 149/425 (35%), Gaps = 135/425 (31%)
Query: 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQ 220
L + + F+E +R+ + D V +G+GGS LGP E + G++
Sbjct: 440 LAEYEAFAEEVRAEGF--------TDAVVLGMGGSSLGP-----------EVLAETFGQR 480
Query: 221 -----LRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGP 275
L L + DP V ++ TL +V SK+ T E + + LG
Sbjct: 481 DGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGTLEPNIFKDYFFARVKEVLGA 540
Query: 276 SAVAKHMVAVSTNLTLVEKFGIDPNNAFA-------FWDW------VGGRYSVCSAVGVL 322
A +H VAV+ DP ++ F +GGRYSV S G++
Sbjct: 541 KA-GRHFVAVT-----------DPGSSLEKVAKEDGFRKIFHGDPDIGGRYSVLSPFGLV 588
Query: 323 PLSLQYGFSVVEKFLKGAW----SIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARA- 377
P + G V L A S S P N V LGL LG A
Sbjct: 589 PAAAA-GID-VRALLDSALAMVRSCGP---SVPPADNPGVQLGLA-------LGVAATQG 636
Query: 378 ----ILPYSQALEKFAPHIQQVSMESNGKG----VSIDGVPLPFEAGEIDFGEPGTNGQH 429
+ S A+ F +Q+ ES GK + IDG PL G+P G
Sbjct: 637 RDKVTIVASPAIADFGAWAEQLIAESTGKEGKGLIPIDGEPL---------GDPAVYGND 687
Query: 430 SFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQ 489
F+ + L GE + D ++ AL E
Sbjct: 688 RV-------------FVY-------LRLAGEADAAQDAALA-------AL------EA-- 712
Query: 490 KENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWG 549
A H P + ++L S A +GQ +E AV G + GIN FDQ
Sbjct: 713 ----AGH-----------PVVRIVLDS--AEQLGQEFFRWEMATAVAGAVLGINPFDQPD 755
Query: 550 VELGK 554
VE K
Sbjct: 756 VEASK 760
>gnl|CDD|216165 pfam00871, Acetate_kinase, Acetokinase family. This family
includes acetate kinase, butyrate kinase and
2-methylpropanoate kinase.
Length = 387
Score = 34.6 bits (80), Expect = 0.12
Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 40/159 (25%)
Query: 106 LAEAAQLNN--KINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDK 163
LAE + N + + G+K A + + V+ L+
Sbjct: 29 LAERIGIPNAFILKKENGGKKN-------------EELTAYADHEEALKVI------LNT 69
Query: 164 IKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTD--LEAI-ECARGRQ 220
+KE K L ++ A+G G F + L TD ++AI +
Sbjct: 70 LKEHG-----------KIKDLSEIDAIGHRVVHGGEKFTDSVLVTDEVVKAIKDGIPLAP 118
Query: 221 LRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETM 259
L AN+ I++A + P V V F TM
Sbjct: 119 LHNPANLIGIEIADKL---LPPVKNVAVFDTAFHQ--TM 152
>gnl|CDD|240224 cd05798, SIS_TAL_PGI, SIS_TAL_PGI: Transaldolase (TAL)/
Phosphoglucose isomerase (PGI). This group represents
the SIS (Sugar ISomerase) PGI domain, of a
multifunctional protein (TAL-PGI ) having both TAL and
PGI activities. TAL_PGI contains an N-terminal TAL
domain and a C-terminal PGI domain. TAL catalyzes the
reversible conversion of sedoheptulose-7-phosphate (S7P)
and glyceraldehyde-3-phosphate (G3P), to
fructose-6-phosphate (F6P) and erythrose-4-phosphate
(E4P). PGI catalyzes the reversible isomerization of F6P
to glucose-6-phosphate (G6P). It has been suggested for
Gluconobacter oxydans TAL_PGI that this enzyme generates
E4P and G6P directly from S7P and G3P. G. oxydans
TAL_PGI contributes to increased xylitol production from
D-arabitol. As xylitol is an alternative natural
sweetner to sucrose, the microbial conversion of
D-arabitol to xylitol is of interest to food and
pharmaceutical industries.
Length = 129
Score = 32.4 bits (74), Expect = 0.25
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 519 AYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQ 559
AY++GQ +E AV G + GIN FDQ VE K +
Sbjct: 88 AYDLGQEFFRWEMATAVAGAVLGINPFDQPDVEASKIETRR 128
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 31.2 bits (71), Expect = 1.5
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 41/126 (32%)
Query: 368 VSFLGHPARAILPYSQAL--EKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGT 425
V FLG P + + YS++L +F NG G IDG P I+ G P
Sbjct: 67 VVFLGRPMQ--VTYSESLLGRRF-----------NGSGKPIDGGPELEG-EPIEIGGPSV 112
Query: 426 NGQHSFYQLIHQGRVIPCDFIG-----------VVKSQQ-PVY-LKGEVVSNHDELMSNF 472
N R++P + I +V+SQ+ P++ + GE ++ L++
Sbjct: 113 NPVK---------RIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGE---PYNALLARI 160
Query: 473 FAQPDA 478
Q +A
Sbjct: 161 ALQAEA 166
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 30.4 bits (69), Expect = 2.9
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 24/81 (29%)
Query: 368 VSFLGHPARAILPYSQAL--EKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGT 425
V F G + +P S+ L F NG G IDG P +D
Sbjct: 72 VRFTGETLK--IPVSEDLLGRIF-----------NGSGKPIDGGPEIVPEDRLDINGAPI 118
Query: 426 NGQHSFYQLIHQGRVIPCDFI 446
N R+ P +FI
Sbjct: 119 NP---------YARIYPEEFI 130
>gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional.
Length = 273
Score = 29.9 bits (68), Expect = 3.8
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 177 VGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236
VG T ++ G+ S + P FV+T L A+G NV+P DVA +I
Sbjct: 158 VGFTDAARLELRGTGVHVSVVLPSFVNTELIAGTGG---AKG-----FKNVEPEDVAAAI 209
Query: 237 TGL--NPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAV 278
G P + V + L R +RE ++ LG V
Sbjct: 210 VGTVAKPRPEVRVPRALGPLAQAQRLLPRRVREALNRLLGGDRV 253
>gnl|CDD|153312 cd07628, BAR_Atg24p, The Bin/Amphiphysin/Rvs (BAR) domain of yeast
Sorting Nexin Atg24p. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions. Sorting
nexins (SNXs) are Phox homology (PX) domain containing
proteins that are involved in regulating membrane
traffic and protein sorting in the endosomal system.
SNXs differ from each other in their lipid-binding
specificity, subcellular localization and specific
function in the endocytic pathway. A subset of SNXs also
contain BAR domains. The PX-BAR structural unit
determines the specific membrane targeting of SNXs.
Atg24p is involved in membrane fusion events at the
vacuolar surface during pexophagy. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions.
Length = 185
Score = 29.2 bits (66), Expect = 4.4
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 41 SSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTM 100
S +L + + L + E T L+DL+ ++++ D LDY + L T
Sbjct: 67 SESLSQFSTSLRVLNKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYLLT- 125
Query: 101 DKLYQLAEAAQLNNK-INRMY-NGEKINSTENRSVLH 135
D++ E + NK + + Y N E+I E + L
Sbjct: 126 DEVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLG 162
>gnl|CDD|171737 PRK12807, PRK12807, flagellin; Provisional.
Length = 287
Score = 29.4 bits (65), Expect = 4.9
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 92 RQNATLKTM-DKLYQLAEAAQLNNKINRMYNGEKINS-TENRSVLHVALRA-PRDAAINS 148
R N + +M + Y ++N +NR+ +G++INS ++ + L +A R R + +
Sbjct: 2 RINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEK 61
Query: 149 DGKN 152
+N
Sbjct: 62 ASQN 65
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid
transport and metabolism].
Length = 348
Score = 29.5 bits (67), Expect = 5.2
Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 26/118 (22%)
Query: 150 GKNVVPEVWKVLDKIKEFSETIR------SGSWVGATGKVLKDVVAVGIGGS---FLGPL 200
G V+ KVL+ EF G G+ L + + + G
Sbjct: 15 GPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGA- 73
Query: 201 FVHTALQTDLEAIECARG------RQLRFLANVDPIDVAKSITGLNPE----TTLVVV 248
V L E RG ++L AN+ P AKS+ GL +V+V
Sbjct: 74 -VGGPKWDPLPRPE--RGLLLALRKELDLYANLRP---AKSLPGLKSPLVKGVDIVIV 125
>gnl|CDD|182679 PRK10725, PRK10725, fructose-1-P/6-phosphogluconate phosphatase;
Provisional.
Length = 188
Score = 28.9 bits (65), Expect = 5.2
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 207 QTDLE----AIECARGRQLRFLANVDP---IDVAKSITGLNPETTLVVVVSKTFTTAETM 259
Q DL+ A E + L +V+P I+V K+ G P + V AE +
Sbjct: 63 QADLDPHALAREKTEAVKSMLLDSVEPLPLIEVVKAWHGRRP---MAVGTGSESAIAEAL 119
Query: 260 LNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWD 307
L LR + + V H A T L + G+ P F D
Sbjct: 120 LAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFED 167
>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 840
Score = 29.4 bits (66), Expect = 6.5
Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 27/152 (17%)
Query: 272 ALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYG-- 329
AL P + A++ FG+ A D G + V + Y
Sbjct: 114 ALLPERQDNLLAAIAQE---SNGFGL------ATLDLTTGEFKVT---ELADKETLYAEL 161
Query: 330 FSV--VEKFLKGAWSIDQHFISAPYEKNIPVL----------LGLLSIWNVSFLGHPARA 377
+ E L S + + K+ V+ LG L + N A
Sbjct: 162 QRLNPAEVLLAEDLSEMEAIELREFRKDTAVMSLEAQFGTEDLGGLGLRNAPLGLTAAGC 221
Query: 378 ILPYSQALEKFA-PHIQQVSMESNGKGVSIDG 408
+L Y++ ++ A PH+Q V + + +D
Sbjct: 222 LLQYAKRTQRTALPHLQPVRLYELQDFMQLDA 253
>gnl|CDD|185750 cd09237, V_ScBro1_like, Protein-interacting V-domain of
Saccharomyces cerevisiae Bro1 and related domains. This
family contains the V-shaped (V) domain of Saccharomyces
cerevisiae Bro1, and related domains. It belongs to the
V_Alix_like superfamily which also includes the V-domain
of Saccharomyces cerevisiae Rim20 (also known as PalA),
mammalian Alix (apoptosis-linked gene-2 interacting
protein X), His-Domain type N23 protein tyrosine
phosphatase (HD-PTP, also known as PTPN23), and related
domains. Bro1 interacts with the ESCRT (Endosomal
Sorting Complexes Required for Transport) system, and
participates in endosomal trafficking. The mammalian
Alix V-domain (belonging to a different family) contains
a binding site, partially conserved in the superfamily,
for the retroviral late assembly (L) domain YPXnL motif.
The Alix V-domain is also a dimerization domain. Bro1
also has an N-terminal Bro1-like domain, which binds
Snf7, a component of the ESCRT-III complex, and a
C-terminal proline-rich region (PRR). The C-terminal
portion (V-domain and PRR) of S. cerevisiae Bro1
interacts with Doa4, a ubiquitin thiolesterase needed to
remove ubiquitin from MVB cargoes. It interacts with a
YPxL motif in the Doa4s catalytic domain to stimulate
its deubiquitination activity.
Length = 356
Score = 29.2 bits (66), Expect = 6.7
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 15/134 (11%)
Query: 52 KDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFD--GILLDYSRQNATLKTMDKLYQ--LA 107
+ V EI + DL + + M + S A+L+ + L
Sbjct: 80 PQSASWVNEIDSS-YNDLDEEMKEIEKMRKKILAKWTQSPSSSLTASLREDLVKLKKSLV 138
Query: 108 EAAQLNNKINRMYNG--EKINSTENRSVLHVALRAPRDAAINS-------DGKNVVPEVW 158
EA+ + K+ + + E I N L L + D +N V
Sbjct: 139 EASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQN-EQTVL 197
Query: 159 KVLDKIKEFSETIR 172
K + +++E E +
Sbjct: 198 KQIKQLEELLEDLN 211
>gnl|CDD|180650 PRK06665, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 627
Score = 29.3 bits (66), Expect = 7.1
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 90 YSRQNATLKTMDKLYQLAEAAQLN--NKINRMYNGEKINSTE 129
YSRQ T+KT D LY A LN K ++ G +I S E
Sbjct: 37 YSRQRVTMKTFDPLY----APSLNRAEKPGQIGQGVEIQSIE 74
>gnl|CDD|222346 pfam13728, TraF, F plasmid transfer operon protein. TraF protein
undergoes proteolytic processing associated with export.
The 19 amino acids at the amino terminus of the
polypeptides appear to constitute a typical membrane
leader peptide - not included in this family, while the
remainder of the molecule is predicted to be primarily
hydrophilic in character. F plasmid TraF and TraH are
required for F pilus assembly and F plasmid transfer,
and they are both localised to the outer membrane in the
presence of the complete F transfer region, especially
TraV, the putative anchor.
Length = 215
Score = 28.7 bits (65), Expect = 7.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 380 PYSQALEKFAPHIQQVSMESNG---KGVSIDGVPLP 412
PY QA AP +Q + + G VS+DG PLP
Sbjct: 133 PYCQA---QAPILQAFA-DKYGFSVIPVSVDGGPLP 164
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase
inhibitor.
Length = 572
Score = 29.2 bits (65), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 498 IPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEG 537
+ H TF G+ P+ + + SLN Y IG++ +A+ G
Sbjct: 308 MTHVTFIGDGPTKTKITGSLNFY-IGKVKTYLTATVAING 346
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 28.8 bits (65), Expect = 8.6
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 172 RSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLAN--VDP 229
R +WV K+VVA+G+ FL PL T + I+ A R L + DP
Sbjct: 313 RKQAWV-------KNVVALGLASGFLEPLE-----STSIHLIQSALRRLLALFPDGGFDP 360
Query: 230 IDVAK 234
+A+
Sbjct: 361 AAIAE 365
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 28.4 bits (64), Expect = 9.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 191 GIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPI 230
IG + LG V A+ D EA+E AR L +V+ +
Sbjct: 60 AIGAALLGASRV-LAVDIDPEALEIARANAEELLGDVEFV 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.406
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,099,970
Number of extensions: 3063785
Number of successful extensions: 2639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2590
Number of HSP's successfully gapped: 40
Length of query: 606
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 503
Effective length of database: 6,369,140
Effective search space: 3203677420
Effective search space used: 3203677420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)