Query 007375
Match_columns 606
No_of_seqs 363 out of 2519
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 22:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00262 subtilisin-like prote 100.0 1.1E-48 2.5E-53 419.2 22.8 264 2-455 304-618 (639)
2 cd05562 Peptidases_S53_like Pe 100.0 7.5E-48 1.6E-52 388.2 23.8 258 9-450 3-274 (275)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 1.8E-47 3.9E-52 382.6 25.5 238 5-419 1-254 (255)
4 cd07478 Peptidases_S8_CspA-lik 100.0 2.1E-47 4.6E-52 409.8 24.4 376 9-441 2-455 (455)
5 cd07497 Peptidases_S8_14 Pepti 100.0 2.2E-47 4.7E-52 390.4 23.2 268 10-415 1-311 (311)
6 cd07489 Peptidases_S8_5 Peptid 100.0 2.1E-46 4.4E-51 387.6 27.1 271 1-452 2-300 (312)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 5.6E-46 1.2E-50 390.3 27.2 279 3-450 1-346 (346)
8 cd07476 Peptidases_S8_thiazoli 100.0 1.6E-45 3.5E-50 370.2 25.6 240 4-421 2-255 (267)
9 cd05561 Peptidases_S8_4 Peptid 100.0 2.8E-45 6.2E-50 363.4 25.0 230 13-441 1-239 (239)
10 cd04852 Peptidases_S8_3 Peptid 100.0 1.4E-44 3.1E-49 372.8 26.2 238 5-416 23-307 (307)
11 cd07474 Peptidases_S8_subtilis 100.0 4.5E-44 9.7E-49 367.7 28.4 264 10-448 1-295 (295)
12 cd07493 Peptidases_S8_9 Peptid 100.0 1.3E-43 2.8E-48 357.4 24.4 232 12-416 1-261 (261)
13 cd07481 Peptidases_S8_Bacillop 100.0 1.6E-43 3.5E-48 357.2 24.9 229 10-416 1-264 (264)
14 cd04857 Peptidases_S8_Tripepti 100.0 3E-43 6.6E-48 366.4 26.6 220 41-418 183-412 (412)
15 cd07487 Peptidases_S8_1 Peptid 100.0 7.4E-43 1.6E-47 352.9 26.2 248 10-416 1-264 (264)
16 cd07483 Peptidases_S8_Subtilis 100.0 5.3E-43 1.2E-47 357.4 24.5 228 11-416 1-291 (291)
17 cd07485 Peptidases_S8_Fervidol 100.0 5.8E-42 1.2E-46 347.6 25.1 244 3-414 1-273 (273)
18 cd04847 Peptidases_S8_Subtilis 100.0 2.4E-42 5.2E-47 353.7 22.2 258 13-416 1-291 (291)
19 cd07484 Peptidases_S8_Thermita 100.0 2.4E-41 5.2E-46 341.0 25.4 234 1-418 18-259 (260)
20 cd07490 Peptidases_S8_6 Peptid 100.0 2.6E-41 5.6E-46 339.6 25.3 242 12-416 1-254 (254)
21 cd07494 Peptidases_S8_10 Pepti 100.0 2.8E-41 6E-46 344.7 23.1 246 1-420 10-287 (298)
22 cd07498 Peptidases_S8_15 Pepti 100.0 3.8E-41 8.3E-46 335.9 23.5 232 13-414 1-242 (242)
23 cd04077 Peptidases_S8_PCSK9_Pr 100.0 5.6E-41 1.2E-45 337.3 24.1 225 5-417 19-255 (255)
24 cd04843 Peptidases_S8_11 Pepti 100.0 6.4E-41 1.4E-45 338.2 20.6 244 1-416 4-277 (277)
25 cd07480 Peptidases_S8_12 Pepti 100.0 2.3E-40 4.9E-45 339.8 24.5 260 7-446 4-296 (297)
26 cd07496 Peptidases_S8_13 Pepti 100.0 2.9E-40 6.2E-45 337.3 24.7 232 12-414 1-285 (285)
27 cd07477 Peptidases_S8_Subtilis 100.0 6.1E-40 1.3E-44 324.5 25.0 219 12-414 1-229 (229)
28 cd07473 Peptidases_S8_Subtilis 100.0 1.2E-39 2.7E-44 328.4 25.5 224 11-416 2-259 (259)
29 cd04842 Peptidases_S8_Kp43_pro 100.0 9.9E-40 2.2E-44 335.2 22.2 261 8-416 4-293 (293)
30 cd07491 Peptidases_S8_7 Peptid 100.0 2.4E-39 5.3E-44 321.5 20.7 146 10-173 2-170 (247)
31 cd07492 Peptidases_S8_8 Peptid 100.0 1.1E-38 2.5E-43 313.7 24.2 210 12-416 1-222 (222)
32 PF00082 Peptidase_S8: Subtila 100.0 7.5E-40 1.6E-44 334.1 15.9 262 14-450 1-282 (282)
33 cd07482 Peptidases_S8_Lantibio 100.0 1.2E-38 2.6E-43 327.3 22.5 133 12-156 1-159 (294)
34 cd04059 Peptidases_S8_Protein_ 100.0 2.9E-38 6.3E-43 324.9 18.5 239 1-416 28-297 (297)
35 cd04848 Peptidases_S8_Autotran 100.0 1.3E-37 2.9E-42 314.8 22.8 235 9-416 1-267 (267)
36 KOG1153 Subtilisin-related pro 100.0 7.6E-38 1.7E-42 313.3 14.6 226 3-416 211-461 (501)
37 KOG4266 Subtilisin kexin isozy 100.0 1.6E-33 3.4E-38 289.6 22.8 264 3-456 192-471 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 7.5E-34 1.6E-38 304.0 19.6 240 42-450 309-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 4.2E-34 9.1E-39 282.9 15.2 215 16-414 5-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.4E-30 3.1E-35 258.2 24.2 222 13-414 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 6.8E-23 1.5E-27 225.4 22.2 262 3-450 131-420 (508)
42 cd04056 Peptidases_S53 Peptida 99.8 2.5E-18 5.3E-23 180.8 13.3 106 67-176 79-198 (361)
43 KOG3526 Subtilisin-like propro 99.7 9E-18 1.9E-22 165.1 4.6 293 1-470 150-474 (629)
44 cd02133 PA_C5a_like PA_C5a_lik 99.2 9.6E-11 2.1E-15 106.6 11.8 116 202-337 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.2 2.6E-10 5.7E-15 101.5 13.5 121 182-311 2-125 (126)
46 cd04816 PA_SaNapH_like PA_SaNa 98.6 2.7E-07 5.8E-12 81.5 9.7 86 224-311 29-121 (122)
47 cd02122 PA_GRAIL_like PA _GRAI 98.5 5.8E-07 1.3E-11 80.7 10.6 86 224-311 44-137 (138)
48 cd02129 PA_hSPPL_like PA_hSPPL 98.5 7.2E-07 1.6E-11 77.5 10.4 90 203-304 19-114 (120)
49 PF06280 DUF1034: Fn3-like dom 98.5 1.3E-06 2.8E-11 75.9 12.0 87 507-597 2-112 (112)
50 PF02225 PA: PA domain; Inter 98.5 1.7E-07 3.8E-12 79.7 6.4 77 224-302 19-101 (101)
51 cd02127 PA_hPAP21_like PA_hPAP 98.5 1E-06 2.2E-11 76.9 10.7 86 224-312 21-116 (118)
52 cd04818 PA_subtilisin_1 PA_sub 98.5 8.5E-07 1.8E-11 77.9 10.2 86 223-311 26-117 (118)
53 COG4934 Predicted protease [Po 98.5 2.4E-06 5.2E-11 98.0 15.0 153 4-171 220-395 (1174)
54 cd00538 PA PA: Protease-associ 98.5 9.5E-07 2.1E-11 78.4 9.5 85 224-310 30-124 (126)
55 cd02126 PA_EDEM3_like PA_EDEM3 98.4 1.9E-06 4E-11 76.4 9.8 84 224-310 27-124 (126)
56 cd02130 PA_ScAPY_like PA_ScAPY 98.4 2.2E-06 4.8E-11 75.7 9.9 84 225-311 32-121 (122)
57 cd02124 PA_PoS1_like PA_PoS1_l 98.3 3.3E-06 7.2E-11 74.9 10.0 85 223-310 40-127 (129)
58 cd02125 PA_VSR PA_VSR: Proteas 98.3 3.2E-06 7E-11 74.8 9.8 86 224-311 22-126 (127)
59 cd04817 PA_VapT_like PA_VapT_l 98.3 2.5E-06 5.5E-11 76.2 9.2 74 232-305 50-134 (139)
60 cd02132 PA_GO-like PA_GO-like: 98.3 3.5E-06 7.5E-11 76.1 9.9 82 224-310 48-137 (139)
61 cd04813 PA_1 PA_1: Protease-as 98.3 3.8E-06 8.2E-11 73.2 9.2 78 224-305 27-112 (117)
62 cd04819 PA_2 PA_2: Protease-as 98.2 1.8E-05 4E-10 70.2 11.3 92 203-307 22-122 (127)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.2 1.1E-05 2.5E-10 73.9 10.1 82 224-307 50-142 (153)
64 KOG3525 Subtilisin-like propro 98.1 6.9E-06 1.5E-10 87.6 8.3 145 1-157 22-189 (431)
65 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.0025 5.4E-08 59.6 7.6 69 234-304 51-155 (183)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.0 0.0033 7.2E-08 56.3 8.0 78 233-310 34-132 (134)
67 PF14874 PapD-like: Flagellar- 96.7 0.054 1.2E-06 45.8 13.0 93 499-600 9-101 (102)
68 PF10633 NPCBM_assoc: NPCBM-as 95.9 0.044 9.5E-07 44.0 7.7 57 515-572 5-62 (78)
69 KOG2442 Uncharacterized conser 95.6 0.038 8.3E-07 58.1 7.9 80 234-315 91-178 (541)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 95.4 0.033 7.2E-07 49.7 5.6 64 205-275 23-96 (137)
71 cd02121 PA_GCPII_like PA_GCPII 95.3 0.073 1.6E-06 51.6 8.2 39 234-274 67-105 (220)
72 cd04822 PA_M28_1_3 PA_M28_1_3: 95.2 0.095 2.1E-06 47.7 8.3 88 205-300 21-130 (151)
73 cd04814 PA_M28_1 PA_M28_1: Pro 95.1 0.043 9.3E-07 49.3 5.4 66 203-275 19-100 (142)
74 PF06030 DUF916: Bacterial pro 93.3 1.1 2.4E-05 39.2 10.5 74 511-587 23-120 (121)
75 cd02131 PA_hNAALADL2_like PA_h 93.0 0.15 3.2E-06 46.0 4.5 39 235-275 37-75 (153)
76 PF11614 FixG_C: IG-like fold 92.5 1.3 2.8E-05 38.5 9.9 56 516-573 32-87 (118)
77 KOG3920 Uncharacterized conser 92.0 0.16 3.4E-06 45.4 3.3 90 223-315 73-174 (193)
78 COG1470 Predicted membrane pro 90.1 3.6 7.8E-05 43.7 11.7 74 511-585 393-467 (513)
79 KOG4628 Predicted E3 ubiquitin 86.2 2 4.4E-05 44.3 6.9 78 225-304 63-149 (348)
80 PF00345 PapD_N: Pili and flag 81.8 12 0.00027 32.4 9.3 53 516-571 15-74 (122)
81 PF00635 Motile_Sperm: MSP (Ma 81.3 15 0.00032 31.0 9.4 52 516-571 19-70 (109)
82 cd04821 PA_M28_1_2 PA_M28_1_2: 78.3 3.8 8.3E-05 37.6 4.9 45 231-275 42-103 (157)
83 COG1470 Predicted membrane pro 77.2 40 0.00086 36.2 12.4 57 516-574 285-347 (513)
84 TIGR02745 ccoG_rdxA_fixG cytoc 72.2 18 0.00039 39.1 8.8 54 516-571 347-400 (434)
85 PF07718 Coatamer_beta_C: Coat 71.4 36 0.00078 30.5 9.0 69 516-586 70-138 (140)
86 PF07705 CARDB: CARDB; InterP 65.1 74 0.0016 25.9 9.7 53 515-571 19-72 (101)
87 PF00927 Transglut_C: Transglu 58.4 72 0.0016 26.9 8.4 55 514-571 14-77 (107)
88 PF07610 DUF1573: Protein of u 55.0 49 0.0011 23.2 5.6 43 521-568 2-45 (45)
89 smart00635 BID_2 Bacterial Ig- 51.2 45 0.00098 26.6 5.6 40 545-589 4-43 (81)
90 PRK15098 beta-D-glucoside gluc 49.0 87 0.0019 36.7 9.6 72 497-572 642-729 (765)
91 PF12690 BsuPI: Intracellular 48.2 74 0.0016 25.6 6.4 53 517-571 2-71 (82)
92 KOG1114 Tripeptidyl peptidase 47.9 14 0.0003 42.8 2.7 49 550-601 636-689 (1304)
93 PF02845 CUE: CUE domain; Int 44.9 23 0.00051 24.3 2.6 24 392-415 5-28 (42)
94 PLN03080 Probable beta-xylosid 42.7 77 0.0017 37.2 7.9 78 516-595 685-778 (779)
95 PF08821 CGGC: CGGC domain; I 35.8 2.7E+02 0.0058 23.7 8.2 69 76-148 36-105 (107)
96 PF05753 TRAP_beta: Translocon 35.0 2.5E+02 0.0053 26.5 8.6 70 514-587 37-114 (181)
97 PF08260 Kinin: Insect kinin p 34.7 18 0.0004 15.7 0.4 6 329-334 3-8 (8)
98 PRK13202 ureB urease subunit b 33.2 94 0.002 26.2 4.7 14 517-531 21-34 (104)
99 cd00407 Urease_beta Urease bet 31.8 1E+02 0.0022 25.9 4.7 15 516-531 19-33 (101)
100 PRK15019 CsdA-binding activato 31.4 47 0.001 30.1 3.0 34 375-409 76-109 (147)
101 smart00546 CUE Domain that may 30.8 76 0.0016 21.8 3.4 25 391-415 5-29 (43)
102 TIGR01451 B_ant_repeat conserv 30.6 2.1E+02 0.0046 20.7 6.1 37 516-555 13-50 (53)
103 PRK13203 ureB urease subunit b 30.6 1.1E+02 0.0023 25.8 4.6 15 516-531 19-33 (102)
104 TIGR03391 FeS_syn_CsdE cystein 30.3 51 0.0011 29.6 3.0 35 375-410 71-105 (138)
105 PF13940 Ldr_toxin: Toxin Ldr, 30.2 44 0.00094 21.8 1.8 13 383-395 14-26 (35)
106 PF04255 DUF433: Protein of un 30.1 45 0.00097 24.7 2.2 39 374-412 10-54 (56)
107 PF01345 DUF11: Domain of unkn 29.2 1.4E+02 0.003 23.2 5.2 31 515-546 41-72 (76)
108 TIGR00192 urease_beta urease, 28.1 1.3E+02 0.0027 25.3 4.7 15 516-531 19-33 (101)
109 PF02601 Exonuc_VII_L: Exonucl 27.4 1.9E+02 0.004 29.8 7.2 76 75-153 39-118 (319)
110 PRK09296 cysteine desufuration 26.5 65 0.0014 28.9 3.0 33 376-409 67-99 (138)
111 PF02657 SufE: Fe-S metabolism 24.8 77 0.0017 27.9 3.1 33 377-410 59-91 (125)
112 PF04744 Monooxygenase_B: Mono 24.3 6.9E+02 0.015 26.3 10.2 55 514-571 262-336 (381)
113 COG2166 sufE Cysteine desulfur 24.3 69 0.0015 28.8 2.7 33 376-409 72-104 (144)
114 PRK13201 ureB urease subunit b 24.2 1.5E+02 0.0033 26.1 4.7 43 516-567 19-82 (136)
115 PRK13205 ureB urease subunit b 23.8 1.5E+02 0.0033 26.7 4.7 15 516-531 19-33 (162)
116 smart00237 Calx_beta Domains i 21.4 4.4E+02 0.0096 21.3 9.4 52 518-570 19-75 (90)
117 COG1570 XseA Exonuclease VII, 21.2 2.2E+02 0.0048 30.7 6.2 76 74-153 159-236 (440)
118 PRK09918 putative fimbrial cha 20.8 3.2E+02 0.007 26.7 7.0 50 516-569 39-93 (230)
119 cd08523 Reeler_cohesin_like Do 20.7 5.8E+02 0.013 22.4 10.9 21 552-572 74-94 (124)
120 PRK15308 putative fimbrial pro 20.5 4.1E+02 0.0088 26.2 7.5 52 517-570 33-100 (234)
121 TIGR00845 caca sodium/calcium 20.5 1.5E+03 0.033 27.2 13.2 27 392-418 323-349 (928)
122 PF00699 Urease_beta: Urease b 20.2 5.2E+02 0.011 21.7 6.8 15 516-531 18-32 (100)
123 PRK13204 ureB urease subunit b 20.0 2E+02 0.0043 26.1 4.6 15 516-531 42-56 (159)
No 1
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.1e-48 Score=419.18 Aligned_cols=264 Identities=17% Similarity=0.184 Sum_probs=202.9
Q ss_pred ccccccc---CCCCcEEEEecCCCC-CCcccccccc-----------------------------cCCCCCCCCCCChhh
Q 007375 2 TKIWVQF---QHGGKELAMPETTTY-PSAAIEDDVV-----------------------------ANGQSPRDMVGHGTH 48 (606)
Q Consensus 2 ~~~w~~~---~~~Gv~VaViDtGi~-~h~d~~~~~~-----------------------------~~~~~~~D~~GHGTh 48 (606)
.++|+.. .++||+||||||||+ +||||.+.+. ++..+|.|+.|||||
T Consensus 304 ~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~vdd~~G~nfVd~~~~P~D~~GHGTH 383 (639)
T PTZ00262 304 DETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGNVDDEYGANFVNNDGGPMDDNYHGTH 383 (639)
T ss_pred hHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccCCcccccccccccCCCCCCCCCCCcchH
Confidence 3456533 348999999999995 9999986541 122457889999999
Q ss_pred HHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCC
Q 007375 49 VASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTD 128 (606)
Q Consensus 49 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~ 128 (606)
|||||||... +...+.||||+|+|+.+|+++..+.+..+++++||+||+++|++|||||||... ..
T Consensus 384 VAGIIAA~gn--------N~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~------~s 449 (639)
T PTZ00262 384 VSGIISAIGN--------NNIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDE------YS 449 (639)
T ss_pred HHHHHhcccc--------CCCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCC------cc
Confidence 9999999743 233468999999999999998876788999999999999999999999999754 22
Q ss_pred CHHHHHHHHhHhcCcEEEEecCCCCCCCCcc--------------cc----CCCceEEeeccccCCceeeEEEECCceEE
Q 007375 129 DPIALGAFHAVEHGITVVCSAGNDGPSSGSV--------------VN----FAPWIFTVAASTIDRDFESDIVLGGNKVI 190 (606)
Q Consensus 129 ~~~~~~~~~a~~~Gv~vV~aAGN~G~~~~~~--------------~~----~ap~visVga~~~~~~~~~~~~~~~~~~~ 190 (606)
..+..++..|.++|++||+||||+|+..... +. ..|++|+|||+..+.
T Consensus 450 ~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-------------- 515 (639)
T PTZ00262 450 GIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-------------- 515 (639)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC--------------
Confidence 4677888899999999999999998543211 11 124555555532110
Q ss_pred EeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEE
Q 007375 191 KGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIV 270 (606)
Q Consensus 191 ~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~ 270 (606)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeC
Q 007375 271 IDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAP 350 (606)
Q Consensus 271 ~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~AP 350 (606)
......+.||.+|. .++||+||
T Consensus 516 ---------------------------------------------------~~~~s~s~~Snyg~-------~~VDIaAP 537 (639)
T PTZ00262 516 ---------------------------------------------------NNQYSLSPNSFYSA-------KYCQLAAP 537 (639)
T ss_pred ---------------------------------------------------CCcccccccccCCC-------CcceEEeC
Confidence 00012334555542 24599999
Q ss_pred CCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccCCCCCCCccCCCC
Q 007375 351 GVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSG 430 (606)
Q Consensus 351 G~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~ 430 (606)
|++|+++++. +.|..++|||||||||||++|||++++|+|++.||+++|++||.++...
T Consensus 538 G~dI~St~p~------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~--------- 596 (639)
T PTZ00262 538 GTNIYSTFPK------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL--------- 596 (639)
T ss_pred CCCeeeccCC------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC---------
Confidence 9999999987 7899999999999999999999999999999999999999999876432
Q ss_pred CCCCCCCcccccccccccCCCceee
Q 007375 431 AAATPYDFGAGEVSTTASLQPGLVY 455 (606)
Q Consensus 431 ~~~~~~~~G~G~in~~~A~~~~lv~ 455 (606)
++...++|+||+++|++.++-+
T Consensus 597 ---~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 ---KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred ---CCccccCcEEcHHHHHHHHHhc
Confidence 2222233899999999976644
No 2
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=7.5e-48 Score=388.19 Aligned_cols=258 Identities=22% Similarity=0.228 Sum_probs=198.8
Q ss_pred CCCCcEEEEecCCCC-CCc--------ccccccc--cCCCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCC
Q 007375 9 QHGGKELAMPETTTY-PSA--------AIEDDVV--ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPG 77 (606)
Q Consensus 9 ~~~Gv~VaViDtGi~-~h~--------d~~~~~~--~~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~ 77 (606)
+|+||+|+|||+|++ .|| +|..... .......|..||||||||||+ ||||+
T Consensus 3 tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~gHGT~vAgii~------------------GvAP~ 64 (275)
T cd05562 3 DGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNVLGDLDGGSGGGDEGRAMLEIIH------------------DIAPG 64 (275)
T ss_pred CCCceEEEEEeCCccccccccccccCCCCCcceeeccccCCCCCCCchHHHHHHHHh------------------ccCCC
Confidence 469999999999998 554 4433322 122456688999999999994 78999
Q ss_pred CeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhc-CcEEEEecCCCCCCC
Q 007375 78 SRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH-GITVVCSAGNDGPSS 156 (606)
Q Consensus 78 A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~-Gv~vV~aAGN~G~~~ 156 (606)
|+|+.+|+. ...+++++||+||+++|++|||||||.... ..+....+..++.++.++ |++||+||||+|+..
T Consensus 65 a~l~~~~~~-----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~--~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~ 137 (275)
T cd05562 65 AELAFHTAG-----GGELDFAAAIRALAAAGADIIVDDIGYLNE--PFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSG 137 (275)
T ss_pred CEEEEEecC-----CCHHHHHHHHHHHHHcCCCEEEecccccCC--CcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCC
Confidence 999999874 347889999999999999999999998652 222345677888888887 999999999999854
Q ss_pred Cc-cccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccC
Q 007375 157 GS-VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGA 235 (606)
Q Consensus 157 ~~-~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~ 235 (606)
.. .+...|++|+|||+..+...... . |..
T Consensus 138 ~~~~Pa~~~~vitVgA~~~~~~~~~~-----------------------------s---------------~~~------ 167 (275)
T cd05562 138 SIFGHAAAPGAIAVGAVDYGNTPAFG-----------------------------S---------------DPA------ 167 (275)
T ss_pred CccCCCCCCCeEEEEeeccCCCcccc-----------------------------c---------------ccc------
Confidence 32 34567999999997543211000 0 000
Q ss_pred cccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeC
Q 007375 236 LVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPT 315 (606)
Q Consensus 236 ~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 315 (606)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecccCCCccccccCCCCCCCCCCccCCceeeCCC-ceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHH
Q 007375 316 VSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGV-NILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAA 394 (606)
Q Consensus 316 ~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 394 (606)
........+.|+++||+. ++.+||||+|||. ++.+.+.. +.|..++|||||||||||++||
T Consensus 168 ----~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~------------~~~~~~sGTS~AaP~VaG~aAL 229 (275)
T cd05562 168 ----PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG------------DGPPNFFGTSAAAPHAAGVAAL 229 (275)
T ss_pred ----cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC------------CceeecccchHHHHHHHHHHHH
Confidence 000011345678899987 7899999999965 44555544 7899999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhhcccCCCCCCCccCCCCCCCCCCCcccccccccccCC
Q 007375 395 IKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 450 (606)
Q Consensus 395 l~~~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~in~~~A~~ 450 (606)
|+|++|+|+++|||++|++||+++...+ .+..||||+||+.+|++
T Consensus 230 l~~~~p~lt~~~v~~~L~~tA~~~~~~g-----------~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 230 VLSANPGLTPADIRDALRSTALDMGEPG-----------YDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHhCCCCCHHHHHHHHHHhCcccCCCC-----------CCCCcCcCcccHHHHhh
Confidence 9999999999999999999999876432 66789999999999986
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.8e-47 Score=382.63 Aligned_cols=238 Identities=28% Similarity=0.406 Sum_probs=196.7
Q ss_pred ccccCC-CCcEEEEecCCCC-CCcccccccc----cCCCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCC
Q 007375 5 WVQFQH-GGKELAMPETTTY-PSAAIEDDVV----ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGS 78 (606)
Q Consensus 5 w~~~~~-~Gv~VaViDtGi~-~h~d~~~~~~----~~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A 78 (606)
|+++.+ +||+|||||+||+ .||+|.+... .+.....|+.||||||||||+|+. ..+.||||+|
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~~~~~~~~~~~d~~gHGT~VAGiIa~~~-----------~~~~GvAp~a 69 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKERTNWTNEKTLDDGLGHGTFVAGVIASSR-----------EQCLGFAPDA 69 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccccccccCCCCCCCCCCCcHHHHHHHHHccC-----------CCceeECCCC
Confidence 888877 9999999999997 9999985422 223445678899999999999874 1358999999
Q ss_pred eEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCCCc
Q 007375 79 RIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS 158 (606)
Q Consensus 79 ~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~~~ 158 (606)
+|+.+|++.+.+....++++++|++|+++++||||||||... +...++..++.++.++|++||+||||+|+...+
T Consensus 70 ~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~-----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~ 144 (255)
T cd07479 70 EIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD-----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGT 144 (255)
T ss_pred EEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC-----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCccc
Confidence 999999998875567788999999999999999999999754 233566667778889999999999999976544
Q ss_pred c--ccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCc
Q 007375 159 V--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGAL 236 (606)
Q Consensus 159 ~--~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~ 236 (606)
. +...+++|+||++..
T Consensus 145 ~~~Pa~~~~vi~Vga~~~-------------------------------------------------------------- 162 (255)
T cd07479 145 LNNPADQMDVIGVGGIDF-------------------------------------------------------------- 162 (255)
T ss_pred ccCcccCCCceEEeeecc--------------------------------------------------------------
Confidence 3 334578888887421
Q ss_pred ccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCe
Q 007375 237 VKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTV 316 (606)
Q Consensus 237 ~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 316 (606)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccCCCccccccCCCCCCC----CCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHH
Q 007375 317 SVTKYKPAPAIAYFSARGPSPL----TRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVV 392 (606)
Q Consensus 317 t~~~~~~~~~~a~fSS~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 392 (606)
.+.++.|||+|++.. ..+++||||.|||.+|+++.+. +.|..++|||||||||||++
T Consensus 163 -------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~------------~~~~~~sGTS~AaP~VaG~a 223 (255)
T cd07479 163 -------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK------------GGCRALSGTSVASPVVAGAV 223 (255)
T ss_pred -------CCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC------------CCeEEeccHHHHHHHHHHHH
Confidence 236678999996421 1578899999999999988765 77899999999999999999
Q ss_pred HHHHhhCC----CCCHHHHHHHHHhhcccCC
Q 007375 393 AAIKHQNP----TFSPSEIKSAVMTTATQTN 419 (606)
Q Consensus 393 ALl~~~~p----~ls~~~ik~~L~~TA~~~~ 419 (606)
|||+|++| .++|.+||++|++||+++.
T Consensus 224 All~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 224 ALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred HHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 99999998 7999999999999999864
No 4
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=2.1e-47 Score=409.85 Aligned_cols=376 Identities=21% Similarity=0.197 Sum_probs=236.8
Q ss_pred CCCCcEEEEecCCCC-CCccccccc--------cc----C-----------------------C------CCCCCCCCCh
Q 007375 9 QHGGKELAMPETTTY-PSAAIEDDV--------VA----N-----------------------G------QSPRDMVGHG 46 (606)
Q Consensus 9 ~~~Gv~VaViDtGi~-~h~d~~~~~--------~~----~-----------------------~------~~~~D~~GHG 46 (606)
+|+||+|||||+||+ .||+|.+.- ++ . . ....|+.|||
T Consensus 2 tG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GHG 81 (455)
T cd07478 2 TGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGHG 81 (455)
T ss_pred CCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCch
Confidence 569999999999995 999998421 00 0 0 1235789999
Q ss_pred hhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEeeCCCCC----------CCHHHHHHHHHHHHHC-----CCcE
Q 007375 47 THVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG----------CTGSNILAAFDDAIAD-----GVDV 111 (606)
Q Consensus 47 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~----------~~~~~i~~ai~~A~~~-----gvdV 111 (606)
|||||||||+..+ ...+.||||+|+|+++|++...+. +...++++||+|+++. .++|
T Consensus 82 ThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~V 153 (455)
T cd07478 82 THVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLV 153 (455)
T ss_pred HHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeE
Confidence 9999999998632 245689999999999999988743 6788999999999874 5789
Q ss_pred EEecccCCCCCCCCCCCCHHHHHHHHhHhc-CcEEEEecCCCCCCCCccccC---C--Cc--eEEeeccccCCceeeEEE
Q 007375 112 LSLSLGGSAGIVRPLTDDPIALGAFHAVEH-GITVVCSAGNDGPSSGSVVNF---A--PW--IFTVAASTIDRDFESDIV 183 (606)
Q Consensus 112 In~S~G~~~~~~~~~~~~~~~~~~~~a~~~-Gv~vV~aAGN~G~~~~~~~~~---a--p~--visVga~~~~~~~~~~~~ 183 (606)
||||||.+.+ .+...+.++.++..+..+ |++||+||||+|....+.... . .- -+.|+.. +..+...++
T Consensus 154 InlSlG~~~g--~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~--~~~~~~eiW 229 (455)
T cd07478 154 INISLGTNFG--SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEG--EKGFNLEIW 229 (455)
T ss_pred EEEccCcCCC--CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCC--CcceEEEEe
Confidence 9999999876 577788899988887765 999999999999754443321 0 00 1223221 111222222
Q ss_pred ECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCch--hHHHHHHHH
Q 007375 184 LGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGS--VVDKKDGVK 261 (606)
Q Consensus 184 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~--~~~~~~~~~ 261 (606)
......+.-.-..+. .+..+.+..... .... +.......++.+..+.....+ .......-.
T Consensus 230 ~~~~d~~~v~i~sP~----Ge~~~~i~~~~~-----------~~~~--~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~ 292 (455)
T cd07478 230 GDFPDRFSVSIISPS----GESSGRINPGIG-----------GSES--YKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKN 292 (455)
T ss_pred cCCCCEEEEEEECCC----CCccCccCcCCC-----------ccee--EEEEECCeEEEEEEcCCCCCCCCeEEEEEccC
Confidence 211111111111110 000111100000 0000 000000111111111100000 000000112
Q ss_pred hcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEe----eCeeeecccC-CCccccccCCCCC
Q 007375 262 SLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATIL----PTVSVTKYKP-APAIAYFSARGPS 336 (606)
Q Consensus 262 ~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~----~~~t~~~~~~-~~~~a~fSS~Gp~ 336 (606)
...+.+.|.+.........++.|+|...+..++..+|. .....+.+.. ...++...+. .+.++.||||||+
T Consensus 293 ~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~----~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~ 368 (455)
T cd07478 293 IKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFLE----PDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPT 368 (455)
T ss_pred CCccceEEEEEeccCCCceEEEEecCcCcCCCCCEeec----CCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcC
Confidence 33456666666655444456678887666555444442 2222222222 1123333333 3569999999999
Q ss_pred CCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC------CCCCHHHHHHH
Q 007375 337 PLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN------PTFSPSEIKSA 410 (606)
Q Consensus 337 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------p~ls~~~ik~~ 410 (606)
. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+|++ |.|++++||++
T Consensus 369 ~--~~~~kpdi~APG~~i~s~~~~------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~ 434 (455)
T cd07478 369 R--DGRIKPDIAAPGVNILTASPG------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTY 434 (455)
T ss_pred C--CCCcCceEEecCCCEEEeecC------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHH
Confidence 8 899999999999999999987 889999999999999999999999975 56799999999
Q ss_pred HHhhcccCCCCCCCccCCCCCCCCCCCcccc
Q 007375 411 VMTTATQTNNLRAPITTNSGAAATPYDFGAG 441 (606)
Q Consensus 411 L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 441 (606)
|++||+++.. ..+++++||||
T Consensus 435 L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 435 LIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HHHhCccCCC----------CCCCCCCCCCC
Confidence 9999998753 23588999998
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-47 Score=390.43 Aligned_cols=268 Identities=25% Similarity=0.225 Sum_probs=186.1
Q ss_pred CCCcEEEEecCCCC-CCcccccccc-------------cCC--------CCCCCCCCChhhHHHhhccCCcCCCccccc-
Q 007375 10 HGGKELAMPETTTY-PSAAIEDDVV-------------ANG--------QSPRDMVGHGTHVASTAAGQAVQGASYYGL- 66 (606)
Q Consensus 10 ~~Gv~VaViDtGi~-~h~d~~~~~~-------------~~~--------~~~~D~~GHGThVAGiiag~~~~~~~~~G~- 66 (606)
|+||+|+||||||+ +||||..... ..+ ..+.|++||||||||||||+.....+.+++
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~~~~~~~d~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~~~~~~~~~~~ 80 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNFSWKLKFDYKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRGKMEYNLYGYT 80 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCCCcccccCcCCCccCCcCCCCCccCCCCCccccchhHHHHHhccCcccccccccc
Confidence 48999999999996 9999964321 001 235789999999999999986432222221
Q ss_pred CCcceeeecCCCeEEEEEeeCCCCCCCHHHHHH-------HHHHH--HHCCCcEEEecccCCCCCCC--CCCCCHHHHHH
Q 007375 67 AAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA-------AFDDA--IADGVDVLSLSLGGSAGIVR--PLTDDPIALGA 135 (606)
Q Consensus 67 ~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~-------ai~~A--~~~gvdVIn~S~G~~~~~~~--~~~~~~~~~~~ 135 (606)
....+.||||+|+|+.+|++...+......+.. +++|+ .+++++|||||||....... ....+..+...
T Consensus 81 ~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~ 160 (311)
T cd07497 81 GKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVI 160 (311)
T ss_pred cccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccccCcCHHHHHH
Confidence 134579999999999999997542332222332 33443 36799999999998542100 11122333333
Q ss_pred HHh-HhcCcEEEEecCCCCCCCCccc--cCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEcc
Q 007375 136 FHA-VEHGITVVCSAGNDGPSSGSVV--NFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAK 212 (606)
Q Consensus 136 ~~a-~~~Gv~vV~aAGN~G~~~~~~~--~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~ 212 (606)
+.+ .++|+++|+||||+|+...+.. ..++++|+|||+......+ .+.+.+
T Consensus 161 d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~-------------------------~~~~~~-- 213 (311)
T cd07497 161 DALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP-------------------------FYLFGY-- 213 (311)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc-------------------------hhhhcc--
Confidence 332 4899999999999998655443 3568999999975321100 000000
Q ss_pred CCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecH
Q 007375 213 SAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISS 292 (606)
Q Consensus 213 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~ 292 (606)
T Consensus 214 -------------------------------------------------------------------------------- 213 (311)
T cd07497 214 -------------------------------------------------------------------------------- 213 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCC
Q 007375 293 KEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEP 372 (606)
Q Consensus 293 ~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 372 (606)
.....+.++.||||||+. ++++||||+|||++|+++.+...... .....
T Consensus 214 ---------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~--~~~~~ 262 (311)
T cd07497 214 ---------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG--ALDGN 262 (311)
T ss_pred ---------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc--ccCCC
Confidence 001235788999999998 79999999999999999876532100 11122
Q ss_pred CcceeeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHhhc
Q 007375 373 PLFNVISGTSMSCPHISGVVAAIKHQNP------TFSPSEIKSAVMTTA 415 (606)
Q Consensus 373 ~~y~~~sGTSmAaP~VAG~aALl~~~~p------~ls~~~ik~~L~~TA 415 (606)
..|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 263 ~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 263 EAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 5799999999999999999999999876 589999999999997
No 6
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-46 Score=387.61 Aligned_cols=271 Identities=31% Similarity=0.413 Sum_probs=222.6
Q ss_pred CcccccccCC-CCcEEEEecCCCC-CCcccccccc----------------------cCCCCCCCCCCChhhHHHhhccC
Q 007375 1 MTKIWVQFQH-GGKELAMPETTTY-PSAAIEDDVV----------------------ANGQSPRDMVGHGTHVASTAAGQ 56 (606)
Q Consensus 1 ~~~~w~~~~~-~Gv~VaViDtGi~-~h~d~~~~~~----------------------~~~~~~~D~~GHGThVAGiiag~ 56 (606)
|+++|+.+.+ +||+|||||+||+ .||+|.+.+. .+..++.|..||||||||||+|+
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~ 81 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGDDYDGTNPPVPDDDPMDCQGHGTHVAGIIAAN 81 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccCCcccccccCCCCCCCCCCCCCcHHHHHHHHhcC
Confidence 5789999976 9999999999996 9999975321 12245678899999999999998
Q ss_pred CcCCCcccccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHH
Q 007375 57 AVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF 136 (606)
Q Consensus 57 ~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~ 136 (606)
.. +..+.||||+|+|+.+|++...+......++++|++|++++++|||||||... .+..+.+...+.
T Consensus 82 ~~---------~~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~----~~~~~~~~~~~~ 148 (312)
T cd07489 82 PN---------AYGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS----GWSEDPWAVVAS 148 (312)
T ss_pred CC---------CCceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC----CCCCCHHHHHHH
Confidence 62 23568999999999999998766678888999999999999999999999875 233477778888
Q ss_pred HhHhcCcEEEEecCCCCCCCC---ccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccC
Q 007375 137 HAVEHGITVVCSAGNDGPSSG---SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKS 213 (606)
Q Consensus 137 ~a~~~Gv~vV~aAGN~G~~~~---~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~ 213 (606)
++.++|+++|+||||+|.... ..+...+++|+||+..
T Consensus 149 ~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------------------------------------- 188 (312)
T cd07489 149 RIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------------------------------------- 188 (312)
T ss_pred HHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------------------------------------
Confidence 889999999999999986432 2233457777777531
Q ss_pred CCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHH
Q 007375 214 AKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSK 293 (606)
Q Consensus 214 ~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~ 293 (606)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCC
Q 007375 294 EAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPP 373 (606)
Q Consensus 294 ~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 373 (606)
+.||++||+. +...||||+|||.+++++++... +
T Consensus 189 ----------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~----------~ 222 (312)
T cd07489 189 ----------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG----------G 222 (312)
T ss_pred ----------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC----------C
Confidence 4688999988 68899999999999999988732 4
Q ss_pred cceeeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHhhcccCCCCCCCccCCCCCCCCCCCcccccccccccCCCc
Q 007375 374 LFNVISGTSMSCPHISGVVAAIKHQN-PTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPG 452 (606)
Q Consensus 374 ~y~~~sGTSmAaP~VAG~aALl~~~~-p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~in~~~A~~~~ 452 (606)
.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++....... ....++++.++|+|+||+.+|++..
T Consensus 223 ~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~--~~~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 223 GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTS--ALPDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCc--cccCCCCHhhcCcceeeHHHHhcCC
Confidence 59999999999999999999999999 99999999999999999876543211 1112467789999999999999953
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=5.6e-46 Score=390.34 Aligned_cols=279 Identities=30% Similarity=0.406 Sum_probs=217.7
Q ss_pred ccccccC--CCCcEEEEecCCCC-CCcccccccccC-----------------------------------CCC---CCC
Q 007375 3 KIWVQFQ--HGGKELAMPETTTY-PSAAIEDDVVAN-----------------------------------GQS---PRD 41 (606)
Q Consensus 3 ~~w~~~~--~~Gv~VaViDtGi~-~h~d~~~~~~~~-----------------------------------~~~---~~D 41 (606)
++|+++. |+||+|+|||+||+ .||+|....... ... ..|
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 4799998 69999999999996 999997442221 111 347
Q ss_pred CCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEeeCC--CCCCCHHHHHHHHHHHHHCCCcEEEecccCC
Q 007375 42 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSP--EYGCTGSNILAAFDDAIADGVDVLSLSLGGS 119 (606)
Q Consensus 42 ~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~--~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 119 (606)
..+|||||||||+|...... ....+.||||+|+|+.+|++.. ........+++|++++++.+++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 78999999999999863311 1346799999999999999974 4467888899999999999999999999998
Q ss_pred CCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCCCccc----------------cCCCceEEeeccccCCceeeEEE
Q 007375 120 AGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVV----------------NFAPWIFTVAASTIDRDFESDIV 183 (606)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~~~~~----------------~~ap~visVga~~~~~~~~~~~~ 183 (606)
.. .......+..++.++.++|++||+||||+|....... ...+++|+||++..
T Consensus 156 ~~--~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~--------- 224 (346)
T cd07475 156 AG--FVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK--------- 224 (346)
T ss_pred CC--CCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc---------
Confidence 64 2355667888888999999999999999985442211 11234444444210
Q ss_pred ECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhc
Q 007375 184 LGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSL 263 (606)
Q Consensus 184 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~ 263 (606)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCcc
Q 007375 264 GGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNIL 343 (606)
Q Consensus 264 Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~l 343 (606)
.........++.||+|||+. ..++
T Consensus 225 ------------------------------------------------------~~~~~~~~~~~~~S~~G~~~--~~~~ 248 (346)
T cd07475 225 ------------------------------------------------------KVPNPNGGQMSGFSSWGPTP--DLDL 248 (346)
T ss_pred ------------------------------------------------------ccCCCCCCccCCCcCCCCCc--ccCc
Confidence 00012245788999999998 7899
Q ss_pred CCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh----CCCCCHHH----HHHHHHhhc
Q 007375 344 KPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ----NPTFSPSE----IKSAVMTTA 415 (606)
Q Consensus 344 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~ls~~~----ik~~L~~TA 415 (606)
||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||
T Consensus 249 ~pdi~apG~~i~s~~~~------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta 316 (346)
T cd07475 249 KPDITAPGGNIYSTVND------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTA 316 (346)
T ss_pred CCeEEeCCCCeEEecCC------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999876 78999999999999999999999997 78899876 788999999
Q ss_pred ccCCCCCCCccCCCCCCCCCCCcccccccccccCC
Q 007375 416 TQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 450 (606)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~G~G~in~~~A~~ 450 (606)
.+.... ...+..+.+..+|+|+||+.+|++
T Consensus 317 ~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 317 TPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred Cccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 863221 133456688899999999999985
No 8
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.6e-45 Score=370.23 Aligned_cols=240 Identities=23% Similarity=0.252 Sum_probs=201.5
Q ss_pred cccccCC-CCcEEEEecCCCC-CCcccccccccC-------CCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeee
Q 007375 4 IWVQFQH-GGKELAMPETTTY-PSAAIEDDVVAN-------GQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGG 74 (606)
Q Consensus 4 ~w~~~~~-~Gv~VaViDtGi~-~h~d~~~~~~~~-------~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~Gv 74 (606)
||+++++ +||+|||||+|++ .||+|....+.. .....|..||||||||||+|+. ...+.||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~~~~~~~~~~~gHGT~VAgii~g~~----------~~~~~Gv 71 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAAAACQDGGASAHGTHVASLIFGQP----------CSSVEGI 71 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCccccCCCCCCCCCcHHHHHHHHhcCC----------CCCceeE
Confidence 7999988 9999999999996 999998754321 1345678899999999999874 2246899
Q ss_pred cCCCeEEEEEeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCC
Q 007375 75 SPGSRIAVYRVCSPEYG-CTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDG 153 (606)
Q Consensus 75 AP~A~L~~~kv~~~~~~-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G 153 (606)
||+|+|+.+|++...+. +...++++||++|+++|++|||||||.... .......+..++..+.++|++||+||||+|
T Consensus 72 Ap~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~--~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g 149 (267)
T cd07476 72 APLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQ--TGEADPILANAVAMCQQNNVLIVAAAGNEG 149 (267)
T ss_pred CcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCC--CCCCCHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 99999999999876633 346789999999999999999999997652 234456778888899999999999999999
Q ss_pred CCCCccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcc
Q 007375 154 PSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLA 233 (606)
Q Consensus 154 ~~~~~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~ 233 (606)
.....++...|++|+||+...
T Consensus 150 ~~~~~~Pa~~~~vi~Vga~~~----------------------------------------------------------- 170 (267)
T cd07476 150 CACLHVPAALPSVLAVGAMDD----------------------------------------------------------- 170 (267)
T ss_pred CCCCCCcccCCceEEEEeecC-----------------------------------------------------------
Confidence 776666777899999997421
Q ss_pred cCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEe
Q 007375 234 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATIL 313 (606)
Q Consensus 234 ~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~ 313 (606)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHH
Q 007375 314 PTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVA 393 (606)
Q Consensus 314 ~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 393 (606)
.+.++.||++|+.. .||||+|||.+|+++.+. +.|..++|||||||||||++|
T Consensus 171 ----------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~------------~~~~~~sGTS~AaP~vaG~aA 223 (267)
T cd07476 171 ----------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG------------GEVVRRSGTSFAAAIVAGIAA 223 (267)
T ss_pred ----------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC------------CCeEEeccHHHHHHHHHHHHH
Confidence 12456789999754 388999999999999887 789999999999999999999
Q ss_pred HHHhhCCC----CCHHHHHHHHHhhcccCCCC
Q 007375 394 AIKHQNPT----FSPSEIKSAVMTTATQTNNL 421 (606)
Q Consensus 394 Ll~~~~p~----ls~~~ik~~L~~TA~~~~~~ 421 (606)
||+|++|. +++++||++|++||+++...
T Consensus 224 Ll~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 224 LLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred HHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 99999887 99999999999999998654
No 9
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-45 Score=363.45 Aligned_cols=230 Identities=27% Similarity=0.369 Sum_probs=192.7
Q ss_pred cEEEEecCCCC-CCcccccccccCC----CCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEeeC
Q 007375 13 KELAMPETTTY-PSAAIEDDVVANG----QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCS 87 (606)
Q Consensus 13 v~VaViDtGi~-~h~d~~~~~~~~~----~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~ 87 (606)
|+|||||+|++ .||+|...+.... ..+.|..+|||||||||+|+... . .||||+|+|+.+|++.
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~~~~~~~~~~~~~~~HGT~vAgiia~~~~~---------~--~Gvap~a~i~~~~v~~ 69 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIARLFFAGPGAPAPSAHGTAVASLLAGAGAQ---------R--PGLLPGADLYGADVFG 69 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccccccCCCCCCCCCCCCHHHHHHHHhCCCCC---------C--cccCCCCEEEEEEEec
Confidence 78999999997 9999977765433 23567899999999999997521 1 7999999999999998
Q ss_pred CC---CCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCC-CccccCC
Q 007375 88 PE---YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS-GSVVNFA 163 (606)
Q Consensus 88 ~~---~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~-~~~~~~a 163 (606)
.. ..+...++++||+||++.|++|||||||... ...++.++.++.++|++||+||||+|+.. ..++...
T Consensus 70 ~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~ 142 (239)
T cd05561 70 RAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAY 142 (239)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccC
Confidence 64 2367788999999999999999999999643 24677788889999999999999999653 3445556
Q ss_pred CceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEE
Q 007375 164 PWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVL 243 (606)
Q Consensus 164 p~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 243 (606)
+++|+|+++..
T Consensus 143 ~~vi~V~a~~~--------------------------------------------------------------------- 153 (239)
T cd05561 143 PGVIAVTAVDA--------------------------------------------------------------------- 153 (239)
T ss_pred CCceEEEeecC---------------------------------------------------------------------
Confidence 78888886421
Q ss_pred EecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccC
Q 007375 244 CDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKP 323 (606)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~ 323 (606)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCC
Q 007375 324 APAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS 403 (606)
Q Consensus 324 ~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls 403 (606)
.+.++.||++|+.. ||.|||.+|+++.+. +.|..++|||||||||||++|||+|++| ++
T Consensus 154 ~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~ 212 (239)
T cd05561 154 RGRLYREANRGAHV--------DFAAPGVDVWVAAPG------------GGYRYVSGTSFAAPFVTAALALLLQASP-LA 212 (239)
T ss_pred CCCccccCCCCCcc--------eEEccccceecccCC------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CC
Confidence 13566899999876 999999999998776 7899999999999999999999999999 99
Q ss_pred HHHHHHHHHhhcccCCCCCCCccCCCCCCCCCCCcccc
Q 007375 404 PSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 441 (606)
Q Consensus 404 ~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 441 (606)
++|||++|++||+++...+ ++..||||
T Consensus 213 ~~~i~~~L~~ta~~~g~~~-----------~d~~~G~G 239 (239)
T cd05561 213 PDDARARLAATAKDLGPPG-----------RDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHhhccCCCC-----------cCCCcCCC
Confidence 9999999999999876543 66789998
No 10
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-44 Score=372.81 Aligned_cols=238 Identities=52% Similarity=0.771 Sum_probs=199.4
Q ss_pred ccccCC-CCcEEEEecCCCC-CCccccccccc---------------------------------------------CCC
Q 007375 5 WVQFQH-GGKELAMPETTTY-PSAAIEDDVVA---------------------------------------------NGQ 37 (606)
Q Consensus 5 w~~~~~-~Gv~VaViDtGi~-~h~d~~~~~~~---------------------------------------------~~~ 37 (606)
|.+..+ +||+||||||||+ .||+|.+.... ...
T Consensus 23 ~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~ 102 (307)
T cd04852 23 LGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYR 102 (307)
T ss_pred ccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEEEEEEcccchhhccCcccccCCC
Confidence 334555 9999999999996 99999643211 013
Q ss_pred CCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEeccc
Q 007375 38 SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLG 117 (606)
Q Consensus 38 ~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G 117 (606)
++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+.+..+++++||++|++++++|||||||
T Consensus 103 ~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G 182 (307)
T cd04852 103 SPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIG 182 (307)
T ss_pred CCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 45788999999999999998776666666677889999999999999999865788999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCCCccccCCCceEEeeccccCCceeeEEEECCceEEEeeeecc
Q 007375 118 GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINF 197 (606)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~~~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (606)
... .....+.+..++..+.++|++||+||||+|+.....++..||+++||+++
T Consensus 183 ~~~---~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~------------------------ 235 (307)
T cd04852 183 GGS---PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST------------------------ 235 (307)
T ss_pred CCC---CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc------------------------
Confidence 876 24566788888889999999999999999988777888889999998630
Q ss_pred CCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCc
Q 007375 198 SNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA 277 (606)
Q Consensus 198 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 277 (606)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEee
Q 007375 278 VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAA 357 (606)
Q Consensus 278 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa 357 (606)
+||||+|||.+|+++
T Consensus 236 -----------------------------------------------------------------~~~di~apG~~i~~~ 250 (307)
T cd04852 236 -----------------------------------------------------------------LKPDIAAPGVDILAA 250 (307)
T ss_pred -----------------------------------------------------------------CccceeeccCceeec
Confidence 478999999999999
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 007375 358 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 358 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~ 416 (606)
++.... .........|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 251 ~~~~~~--~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 251 WTPEGA--DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccCccc--cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 874211 012233478999999999999999999999999999999999999999985
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.5e-44 Score=367.74 Aligned_cols=264 Identities=36% Similarity=0.539 Sum_probs=209.4
Q ss_pred CCCcEEEEecCCCC-CCccccc------cc------ccCCCCC---------------CCCCCChhhHHHhhccCCcCCC
Q 007375 10 HGGKELAMPETTTY-PSAAIED------DV------VANGQSP---------------RDMVGHGTHVASTAAGQAVQGA 61 (606)
Q Consensus 10 ~~Gv~VaViDtGi~-~h~d~~~------~~------~~~~~~~---------------~D~~GHGThVAGiiag~~~~~~ 61 (606)
|+||+|+|||+||+ .||+|.+ .+ ......+ .|..+|||||||+|+|...+
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~n-- 78 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVN-- 78 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhcCCCc--
Confidence 58999999999995 9999972 22 1122222 24789999999999987532
Q ss_pred cccccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhc
Q 007375 62 SYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH 141 (606)
Q Consensus 62 ~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~ 141 (606)
...+.||||+|+|+.+|++...+.+...+++++|+++++++++|||||||... ....+.+..+++++.++
T Consensus 79 ------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~----~~~~~~~~~~~~~~~~~ 148 (295)
T cd07474 79 ------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV----NGPDDPDAIAINNAVKA 148 (295)
T ss_pred ------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC----CCCCCHHHHHHHHHHhc
Confidence 34568999999999999998665788899999999999999999999999865 22456788888999999
Q ss_pred CcEEEEecCCCCCCCCcc--ccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCc
Q 007375 142 GITVVCSAGNDGPSSGSV--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDA 219 (606)
Q Consensus 142 Gv~vV~aAGN~G~~~~~~--~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (606)
|+++|+||||+|...... +...+++|+||++.....
T Consensus 149 gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------------------------ 186 (295)
T cd07474 149 GVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------------------------ 186 (295)
T ss_pred CCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------------------------
Confidence 999999999998665544 345689999998531000
Q ss_pred CccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHH
Q 007375 220 NENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEIL 299 (606)
Q Consensus 220 ~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~ 299 (606)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCceEEEeeCeeeecccCCCccccccC-CCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceee
Q 007375 300 AYINSKRNPVATILPTVSVTKYKPAPAIAYFSA-RGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVI 378 (606)
Q Consensus 300 ~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS-~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~ 378 (606)
........|++ +|+.. ...+||||+|||.+|+++++... ..|..+
T Consensus 187 ----------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~----------~~~~~~ 232 (295)
T cd07474 187 ----------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG----------TGYARM 232 (295)
T ss_pred ----------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC----------CceEEe
Confidence 00112334444 45555 68899999999999999987631 678999
Q ss_pred ccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccCCCCCCCccCCCCCCCCCCCccccccccccc
Q 007375 379 SGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTAS 448 (606)
Q Consensus 379 sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~in~~~A 448 (606)
+|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|+||+.+|
T Consensus 233 ~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 233 SGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 999999999999999999999999999999999999998865431 223567899999999987
No 12
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-43 Score=357.39 Aligned_cols=232 Identities=29% Similarity=0.333 Sum_probs=186.9
Q ss_pred CcEEEEecCCCC-CCcccc------cc-------cccCCCCC-CCCCCChhhHHHhhccCCcCCCcccccCCcceeeecC
Q 007375 12 GKELAMPETTTY-PSAAIE------DD-------VVANGQSP-RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSP 76 (606)
Q Consensus 12 Gv~VaViDtGi~-~h~d~~------~~-------~~~~~~~~-~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP 76 (606)
||+|||||+|++ .||+|. .. +..+...+ .|..||||||||||+|+. .+.+.||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~HGT~vagiia~~~----------~~~~~GvAp 70 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFKNLRILGEYDFVDNSNNTNYTDDDHGTAVLSTMAGYT----------PGVMVGTAP 70 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccccCCceeeeecCccCCCCCCCCCCCchhhhheeeeeCC----------CCCEEEeCC
Confidence 799999999997 999993 22 12222333 678899999999999974 234689999
Q ss_pred CCeEEEEEeeCCCC--CCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCC---------CCCCCHHHHHHHHhHhcCcEE
Q 007375 77 GSRIAVYRVCSPEY--GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR---------PLTDDPIALGAFHAVEHGITV 145 (606)
Q Consensus 77 ~A~L~~~kv~~~~~--~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~---------~~~~~~~~~~~~~a~~~Gv~v 145 (606)
+|+|+.+|+..... ......+++|+++|.+.+++|||||||....... ......+..+++.+.++|+++
T Consensus 71 ~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilv 150 (261)
T cd07493 71 NASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLV 150 (261)
T ss_pred CCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEE
Confidence 99999999876442 2345678999999999999999999998753101 011235677888889999999
Q ss_pred EEecCCCCCCC---CccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCcc
Q 007375 146 VCSAGNDGPSS---GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANEN 222 (606)
Q Consensus 146 V~aAGN~G~~~---~~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 222 (606)
|+||||+|... ...+...+++|+||+...
T Consensus 151 v~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~------------------------------------------------ 182 (261)
T cd07493 151 VNSAGNEGSTQWKGIGAPADAENVLSVGAVDA------------------------------------------------ 182 (261)
T ss_pred EEECCCCCCCCCCcccCcccCCceEEEEEecc------------------------------------------------
Confidence 99999999763 334455688999987421
Q ss_pred ccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHH
Q 007375 223 AARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYI 302 (606)
Q Consensus 223 ~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~ 302 (606)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeecccc
Q 007375 303 NSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTS 382 (606)
Q Consensus 303 ~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTS 382 (606)
.+.++.||++||+. ++++||||+|||.++++.... +.|..++|||
T Consensus 183 ---------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~------------~~~~~~sGTS 227 (261)
T cd07493 183 ---------------------NGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD------------GNITYANGTS 227 (261)
T ss_pred ---------------------CCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC------------CcEEeeCcHH
Confidence 13567899999987 889999999999999986554 7899999999
Q ss_pred chhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 007375 383 MSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 383 mAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~ 416 (606)
||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 228 ~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 228 FSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999985
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.6e-43 Score=357.18 Aligned_cols=229 Identities=33% Similarity=0.437 Sum_probs=190.9
Q ss_pred CCCcEEEEecCCCC-CCccccccccc-----------------CCCCCCCCCCChhhHHHhhccCCcCCCcccccCCcce
Q 007375 10 HGGKELAMPETTTY-PSAAIEDDVVA-----------------NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTA 71 (606)
Q Consensus 10 ~~Gv~VaViDtGi~-~h~d~~~~~~~-----------------~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~ 71 (606)
|+||+|||||+|++ .||+|.+.... ....+.|..+|||||||||+|... .+..
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~~~---------~~~~ 71 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRGWGGGSADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGNDG---------DGQQ 71 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccccCCCCcccccccccCCCCCCCCCCCCCchhhhhhheeecCC---------CCCc
Confidence 58999999999996 99999875211 113456788999999999998752 2234
Q ss_pred eeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHH------------CCCcEEEecccCCCCCCCCCCCCHHHHHHHHhH
Q 007375 72 IGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA------------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAV 139 (606)
Q Consensus 72 ~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~------------~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~ 139 (606)
.||||+|+|+.+|++... .+...+++++++++++ .+++|||||||.... ....+..++..+.
T Consensus 72 ~GvAp~a~i~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~-----~~~~~~~~~~~~~ 145 (264)
T cd07481 72 IGVAPGARWIACRALDRN-GGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG-----DNEWLQPAVAAWR 145 (264)
T ss_pred eEECCCCeEEEEEeecCC-CCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC-----CchHHHHHHHHHH
Confidence 899999999999999877 4778899999999975 789999999997651 2355666777888
Q ss_pred hcCcEEEEecCCCCCCCCc---cccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCc
Q 007375 140 EHGITVVCSAGNDGPSSGS---VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKK 216 (606)
Q Consensus 140 ~~Gv~vV~aAGN~G~~~~~---~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 216 (606)
++|++||+||||++..... .+...+++|+||++..
T Consensus 146 ~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------------------------------------------ 183 (264)
T cd07481 146 AAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------------------------------------------ 183 (264)
T ss_pred HCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------------------------------------------
Confidence 9999999999999865432 3445678888887421
Q ss_pred CCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHH
Q 007375 217 DDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAA 296 (606)
Q Consensus 217 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~ 296 (606)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcce
Q 007375 297 EILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFN 376 (606)
Q Consensus 297 ~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~ 376 (606)
.+.++.||++||.. .+++||||+|||.+|.++++. +.|.
T Consensus 184 ---------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~------------~~~~ 222 (264)
T cd07481 184 ---------------------------NDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG------------GGYG 222 (264)
T ss_pred ---------------------------CCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC------------CceE
Confidence 23667899999988 689999999999999999987 7899
Q ss_pred eeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHhhcc
Q 007375 377 VISGTSMSCPHISGVVAAIKHQNPT--FSPSEIKSAVMTTAT 416 (606)
Q Consensus 377 ~~sGTSmAaP~VAG~aALl~~~~p~--ls~~~ik~~L~~TA~ 416 (606)
.++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 223 ~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 223 SSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999 999999999999985
No 14
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=3e-43 Score=366.40 Aligned_cols=220 Identities=28% Similarity=0.375 Sum_probs=166.7
Q ss_pred CCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEeeCCCCC--CCHHHHHHHHHHHHHCCCcEEEecccC
Q 007375 41 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG--CTGSNILAAFDDAIADGVDVLSLSLGG 118 (606)
Q Consensus 41 D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~--~~~~~i~~ai~~A~~~gvdVIn~S~G~ 118 (606)
|+.||||||||||||+.. +...+.||||+|+|+.+|+++...+ +...++++||++|++.|++|||||||.
T Consensus 183 d~~gHGThVAGIIAg~~~--------~~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~ 254 (412)
T cd04857 183 DSGAHGTHVAGIAAAHFP--------EEPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYGE 254 (412)
T ss_pred CCCCCHHHHHHHHhCCCC--------CCCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCCc
Confidence 677999999999999852 2345689999999999999875422 234579999999999999999999998
Q ss_pred CCCCCCCCCCCHHHHHHHH-hHhcCcEEEEecCCCCCCCCccccC---CCceEEeeccccCCceeeEEEECCceEEEeee
Q 007375 119 SAGIVRPLTDDPIALGAFH-AVEHGITVVCSAGNDGPSSGSVVNF---APWIFTVAASTIDRDFESDIVLGGNKVIKGES 194 (606)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~-a~~~Gv~vV~aAGN~G~~~~~~~~~---ap~visVga~~~~~~~~~~~~~~~~~~~~g~~ 194 (606)
... .+.. ..+..++.+ +.++|+++|+||||+|+...++..+ .+.+|+|||..........
T Consensus 255 ~~~--~~~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------- 318 (412)
T cd04857 255 ATH--WPNS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------- 318 (412)
T ss_pred CCC--Cccc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-------------
Confidence 752 1111 234344444 4578999999999999877665543 5789999986322100000
Q ss_pred eccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCC
Q 007375 195 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 274 (606)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~ 274 (606)
|.+
T Consensus 319 -----------y~~------------------------------------------------------------------ 321 (412)
T cd04857 319 -----------YSL------------------------------------------------------------------ 321 (412)
T ss_pred -----------ccc------------------------------------------------------------------
Confidence 000
Q ss_pred CCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCce
Q 007375 275 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI 354 (606)
Q Consensus 275 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I 354 (606)
.....+.++.||||||+. ++.+||||+|||..|
T Consensus 322 ---------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I 354 (412)
T cd04857 322 ---------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAI 354 (412)
T ss_pred ---------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcE
Confidence 001134688999999998 899999999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhhcccC
Q 007375 355 LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQT 418 (606)
Q Consensus 355 ~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~ik~~L~~TA~~~ 418 (606)
.+.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 355 ~s~p~~~----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 355 ASVPNWT----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred EEcccCC----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 8752111 16789999999999999999999975 578999999999999999864
No 15
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-43 Score=352.90 Aligned_cols=248 Identities=31% Similarity=0.504 Sum_probs=204.0
Q ss_pred CCCcEEEEecCCCC-CCccccccccc---------CCCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCe
Q 007375 10 HGGKELAMPETTTY-PSAAIEDDVVA---------NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSR 79 (606)
Q Consensus 10 ~~Gv~VaViDtGi~-~h~d~~~~~~~---------~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~ 79 (606)
|+||+|+|||+|++ .||+|.+.... ......|..||||||||||+|+... ....+.||||+|+
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiiag~~~~-------~~~~~~Giap~a~ 73 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRFADFVNTVNGRTTPYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGAN 73 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccccccccccccCCCCCCCCCCchHHHHHHHhcCCcc-------cCCceEEECCCCe
Confidence 58999999999997 99999877543 2345567889999999999998532 1345799999999
Q ss_pred EEEEEeeCCCCCCCHHHHHHHHHHHHHC----CCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCC
Q 007375 80 IAVYRVCSPEYGCTGSNILAAFDDAIAD----GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPS 155 (606)
Q Consensus 80 L~~~kv~~~~~~~~~~~i~~ai~~A~~~----gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~ 155 (606)
|+.+|+++..+.....++++||+++++. +++|||||||.... .....+.+..++.++.++|++||+||||++..
T Consensus 74 i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~--~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~ 151 (264)
T cd07487 74 LVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPD--PSYGEDPLCQAVERLWDAGIVVVVAAGNSGPG 151 (264)
T ss_pred EEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCC--CCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 9999999887667888999999999998 99999999998763 25566788889999999999999999999977
Q ss_pred CC--ccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcc
Q 007375 156 SG--SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLA 233 (606)
Q Consensus 156 ~~--~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~ 233 (606)
.. ..+...+++|+||+...+..
T Consensus 152 ~~~~~~p~~~~~vi~Vga~~~~~~-------------------------------------------------------- 175 (264)
T cd07487 152 PGTITSPGNSPKVITVGAVDDNGP-------------------------------------------------------- 175 (264)
T ss_pred CCccCCcccCCCceEEEeccCCCC--------------------------------------------------------
Confidence 65 34445689999998643210
Q ss_pred cCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEe
Q 007375 234 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATIL 313 (606)
Q Consensus 234 ~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~ 313 (606)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHH
Q 007375 314 PTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVA 393 (606)
Q Consensus 314 ~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 393 (606)
....++.||++||+. ++++||||+|||.+|++..+..... .....+.|..++|||||||+|||++|
T Consensus 176 ---------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~---~~~~~~~~~~~~GTS~Aap~vaG~~A 241 (264)
T cd07487 176 ---------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP---GAGVGSGYFEMSGTSMATPHVSGAIA 241 (264)
T ss_pred ---------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc---CCCCCCceEeccccchHHHHHHHHHH
Confidence 012467899999998 8999999999999999986542110 11223778999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhhcc
Q 007375 394 AIKHQNPTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 394 Ll~~~~p~ls~~~ik~~L~~TA~ 416 (606)
||+|++|+|++.+||++|++||+
T Consensus 242 ll~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 242 LLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999999999999999985
No 16
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=5.3e-43 Score=357.42 Aligned_cols=228 Identities=25% Similarity=0.293 Sum_probs=178.0
Q ss_pred CCcEEEEecCCCC-CCcccccccccCC---------------------------------------------------CC
Q 007375 11 GGKELAMPETTTY-PSAAIEDDVVANG---------------------------------------------------QS 38 (606)
Q Consensus 11 ~Gv~VaViDtGi~-~h~d~~~~~~~~~---------------------------------------------------~~ 38 (606)
++|+||||||||+ +||||...++.+. ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 5899999999995 9999986542100 11
Q ss_pred CCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccC
Q 007375 39 PRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGG 118 (606)
Q Consensus 39 ~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~ 118 (606)
+.|..||||||||||++...+ ...+.||||+|+|+.+|++... .....++++||+||+++|++|||||||.
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n--------~~g~~GvAp~a~i~~~k~~~~g-~~~~~~i~~Ai~~a~~~g~~IiN~S~G~ 151 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDN--------GIGIDGVADNVKIMPLRIVPNG-DERDKDIANAIRYAVDNGAKVINMSFGK 151 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCC--------CCceEEECCCCEEEEEEEecCC-CcCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 234789999999999997532 2336899999999999998644 5677889999999999999999999997
Q ss_pred CCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCCCcc---c--------cCCCceEEeeccccCCceeeEEEECCc
Q 007375 119 SAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV---V--------NFAPWIFTVAASTIDRDFESDIVLGGN 187 (606)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~~~~---~--------~~ap~visVga~~~~~~~~~~~~~~~~ 187 (606)
... ...+.+..++..+.++|+++|+||||+|...... + ...+.+|+||+....
T Consensus 152 ~~~----~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------------ 215 (291)
T cd07483 152 SFS----PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------------ 215 (291)
T ss_pred CCC----CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc------------
Confidence 541 2234567777888999999999999998542111 0 112445555543110
Q ss_pred eEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceE
Q 007375 188 KVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVG 267 (606)
Q Consensus 188 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g 267 (606)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCce
Q 007375 268 VIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDI 347 (606)
Q Consensus 268 ~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI 347 (606)
.....++.||++|+. +|||
T Consensus 216 ------------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi 234 (291)
T cd07483 216 ------------------------------------------------------YENNLVANFSNYGKK-------NVDV 234 (291)
T ss_pred ------------------------------------------------------CCcccccccCCCCCC-------ceEE
Confidence 011246789999974 4599
Q ss_pred eeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 007375 348 TAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 348 ~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~ 416 (606)
.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 235 ~APG~~i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 235 FAPGERIYSTTPD------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EeCCCCeEeccCc------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999999876 78999999999999999999999999999999999999999984
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=5.8e-42 Score=347.63 Aligned_cols=244 Identities=29% Similarity=0.333 Sum_probs=197.0
Q ss_pred ccccccCC-CCcEEEEecCCCC-CCccccccccc-------C-----------CCCCCCCCCChhhHHHhhccCCcCCCc
Q 007375 3 KIWVQFQH-GGKELAMPETTTY-PSAAIEDDVVA-------N-----------GQSPRDMVGHGTHVASTAAGQAVQGAS 62 (606)
Q Consensus 3 ~~w~~~~~-~Gv~VaViDtGi~-~h~d~~~~~~~-------~-----------~~~~~D~~GHGThVAGiiag~~~~~~~ 62 (606)
++|+.+.+ +||+|+|||+|++ .||+|.+.... . .....|..||||||||||+|+......
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~ 80 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPAVNGYNFVPNVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGG 80 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHcccCCCcc
Confidence 48999988 9999999999996 99999987211 1 122356789999999999997533222
Q ss_pred ccccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhc-
Q 007375 63 YYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH- 141 (606)
Q Consensus 63 ~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~- 141 (606)
..|+ ..+.|+||+|+|+.+|++...+......++++|++|++.|++|||||||... ...+...+..++..+.++
T Consensus 81 ~g~i--~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~---~~~~~~~~~~a~~~~~~~~ 155 (273)
T cd07485 81 VGGI--AGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG---GGIYSPLLKDAFDYFIENA 155 (273)
T ss_pred eecc--ccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC---ccccCHHHHHHHHHHHHhc
Confidence 2122 1346799999999999998875678888999999999999999999999865 233455677777888877
Q ss_pred ------CcEEEEecCCCCCCCCccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCC
Q 007375 142 ------GITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAK 215 (606)
Q Consensus 142 ------Gv~vV~aAGN~G~~~~~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 215 (606)
|++||+||||++......+...+++|+|+++..
T Consensus 156 ~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~----------------------------------------- 194 (273)
T cd07485 156 GGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT----------------------------------------- 194 (273)
T ss_pred ccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-----------------------------------------
Confidence 999999999999877666667788999987421
Q ss_pred cCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHH
Q 007375 216 KDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEA 295 (606)
Q Consensus 216 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g 295 (606)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCC-ceEeeecCCCCCCCCCCCCCCc
Q 007375 296 AEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGV-NILAAWMGNDTGEAPEGKEPPL 374 (606)
Q Consensus 296 ~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~ 374 (606)
.+.++.||++|+.. ||+|||. .|+++++.... ...+.
T Consensus 195 ----------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~------~~~~~ 232 (273)
T cd07485 195 ----------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG------DGGGN 232 (273)
T ss_pred ----------------------------CCCcCccccCCCce--------EEEeCCCCccccccccccC------CCCCC
Confidence 13566899999876 9999999 99988775311 11267
Q ss_pred ceeeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHhh
Q 007375 375 FNVISGTSMSCPHISGVVAAIKHQNPT-FSPSEIKSAVMTT 414 (606)
Q Consensus 375 y~~~sGTSmAaP~VAG~aALl~~~~p~-ls~~~ik~~L~~T 414 (606)
|..++|||||||+|||++|||+|++|. |+++|||++|++|
T Consensus 233 ~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 233 YEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred eEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999 9999999999986
No 18
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-42 Score=353.69 Aligned_cols=258 Identities=24% Similarity=0.253 Sum_probs=187.1
Q ss_pred cEEEEecCCCC-CCcccccccccCC------CCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEe
Q 007375 13 KELAMPETTTY-PSAAIEDDVVANG------QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRV 85 (606)
Q Consensus 13 v~VaViDtGi~-~h~d~~~~~~~~~------~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv 85 (606)
.+||||||||+ .||+|...+.... ..+.|..||||||||||++.... .....|+||+|+|+.+|+
T Consensus 1 p~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv 72 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPALAEDDLDSDEPGWTADDLGHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRV 72 (291)
T ss_pred CEEEEecCCCCCCChhhhhhhccccccccCCCCcCCCCCChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEE
Confidence 37999999997 9999987755322 11578999999999999875422 234579999999999999
Q ss_pred eCCCC----CCCHHHHHHHHHHHHHCC---CcEEEecccCCCCCCCCCCCCHHHHHHH-HhHhcCcEEEEecCCCCCCCC
Q 007375 86 CSPEY----GCTGSNILAAFDDAIADG---VDVLSLSLGGSAGIVRPLTDDPIALGAF-HAVEHGITVVCSAGNDGPSSG 157 (606)
Q Consensus 86 ~~~~~----~~~~~~i~~ai~~A~~~g---vdVIn~S~G~~~~~~~~~~~~~~~~~~~-~a~~~Gv~vV~aAGN~G~~~~ 157 (606)
+...+ .....++++||++|++.+ ++|||||||...... ......+..++. .+.++|++||+||||+|....
T Consensus 73 ~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~-~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~ 151 (291)
T cd04847 73 LPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPID-DGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDA 151 (291)
T ss_pred cCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCcc-CCCCCcHHHHHHHHhccCCeEEEEECCCCCcccc
Confidence 98863 356678999999999853 599999999976311 111124444444 356899999999999997654
Q ss_pred cc------------ccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccC
Q 007375 158 SV------------VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAAR 225 (606)
Q Consensus 158 ~~------------~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 225 (606)
.. +..++++|+|||...+...... ..+
T Consensus 152 ~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~----------------------s~~------------------- 190 (291)
T cd04847 152 ADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR----------------------ARY------------------- 190 (291)
T ss_pred ccccccccccccCCHHHhhhheeeeeeecCccCCCc----------------------ccc-------------------
Confidence 32 2346789999987543211000 000
Q ss_pred CCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcC
Q 007375 226 NCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSK 305 (606)
Q Consensus 226 ~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~ 305 (606)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCC------CCCCCCCcceeec
Q 007375 306 RNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEA------PEGKEPPLFNVIS 379 (606)
Q Consensus 306 ~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~------~~~~~~~~y~~~s 379 (606)
+.........||||||.. ++.+||||+|||++|.+..+....... ........|..++
T Consensus 191 --------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T cd04847 191 --------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVG 254 (291)
T ss_pred --------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccc
Confidence 000011233499999998 899999999999999886542110000 0112337899999
Q ss_pred cccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 007375 380 GTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 380 GTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~ 416 (606)
|||||||||||++|||+|++|++++++||++|++||+
T Consensus 255 GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 255 GTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred cchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999985
No 19
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=2.4e-41 Score=340.98 Aligned_cols=234 Identities=30% Similarity=0.371 Sum_probs=199.9
Q ss_pred CcccccccCCCCcEEEEecCCCC-CCccccccccc-------CCCCCCCCCCChhhHHHhhccCCcCCCcccccCCccee
Q 007375 1 MTKIWVQFQHGGKELAMPETTTY-PSAAIEDDVVA-------NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAI 72 (606)
Q Consensus 1 ~~~~w~~~~~~Gv~VaViDtGi~-~h~d~~~~~~~-------~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~ 72 (606)
++++|++..++||+|+|||+|++ .||+|...... .+..+.|..||||||||||++... ....+.
T Consensus 18 ~~~~~~~~~G~gv~I~viDsGi~~~h~~l~~~~~~~~~~~~~~~~~~~d~~~HGT~vagii~~~~~--------~~~~~~ 89 (260)
T cd07484 18 APKAWDITGGSGVTVAVVDTGVDPTHPDLLKVKFVLGYDFVDNDSDAMDDNGHGTHVAGIIAAATN--------NGTGVA 89 (260)
T ss_pred hHHHHhhcCCCCCEEEEEeCCCCCCCcccccCCcccceeccCCCCCCCCCCCcHHHHHHHHhCccC--------CCCceE
Confidence 35789999779999999999996 99997544332 234567889999999999998742 233468
Q ss_pred eecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCC
Q 007375 73 GGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGND 152 (606)
Q Consensus 73 GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~ 152 (606)
|+||+|+|+.+|+++..+.+...+++++|+++++.+++|||||||... ....+..++..+.++|++||+||||+
T Consensus 90 Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~------~~~~~~~~~~~a~~~gilvV~aaGN~ 163 (260)
T cd07484 90 GVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL------GSTALQEAINYAWNKGVVVVAAAGNE 163 (260)
T ss_pred eECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC------CCHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 999999999999998876778889999999999999999999999764 33567777788889999999999999
Q ss_pred CCCCCccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCc
Q 007375 153 GPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSL 232 (606)
Q Consensus 153 G~~~~~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~ 232 (606)
|.....++...+++|+||+.+.
T Consensus 164 g~~~~~~pa~~~~vi~Vga~~~---------------------------------------------------------- 185 (260)
T cd07484 164 GVSSVSYPAAYPGAIAVAATDQ---------------------------------------------------------- 185 (260)
T ss_pred CCCCCCCCCCCCCeEEEEeeCC----------------------------------------------------------
Confidence 9887777788899999997532
Q ss_pred ccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEE
Q 007375 233 AGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATI 312 (606)
Q Consensus 233 ~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i 312 (606)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHH
Q 007375 313 LPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVV 392 (606)
Q Consensus 313 ~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 392 (606)
.+..+.||++|+.. |++|||.+|++..+. +.|..++|||||||+|||++
T Consensus 186 -----------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------------~~~~~~~GTS~Aap~vag~~ 234 (260)
T cd07484 186 -----------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD------------GDYAYMSGTSMATPHVAGVA 234 (260)
T ss_pred -----------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC------------CCEEEeeeHHHHHHHHHHHH
Confidence 12456789999866 999999999998876 78999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHhhcccC
Q 007375 393 AAIKHQNPTFSPSEIKSAVMTTATQT 418 (606)
Q Consensus 393 ALl~~~~p~ls~~~ik~~L~~TA~~~ 418 (606)
||+++++| |++++||++|++||+++
T Consensus 235 Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 235 ALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999 99999999999999875
No 20
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-41 Score=339.64 Aligned_cols=242 Identities=30% Similarity=0.425 Sum_probs=185.8
Q ss_pred CcEEEEecCCCC-CCccccccccc----------CCCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeE
Q 007375 12 GKELAMPETTTY-PSAAIEDDVVA----------NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRI 80 (606)
Q Consensus 12 Gv~VaViDtGi~-~h~d~~~~~~~----------~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L 80 (606)
||+|||||+|++ .||+|.+.+.. ......|..+|||||||||+|+.. .....||||+|+|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i 71 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQWADFDENRRISATEVFDAGGHGTHVSGTIGGGGA---------KGVYIGVAPEADL 71 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcCCC---------CCCEEEECCCCEE
Confidence 799999999997 99999876432 123455678999999999999862 3345799999999
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHh-cCcEEEEecCCCCCCCCcc
Q 007375 81 AVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE-HGITVVCSAGNDGPSSGSV 159 (606)
Q Consensus 81 ~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~-~Gv~vV~aAGN~G~~~~~~ 159 (606)
+.+|++... .+...+++++|+++++.+++|||||||.... . .+.+..+++.+.+ +|++||+||||+|......
T Consensus 72 ~~~~v~~~~-~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~---~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~ 145 (254)
T cd07490 72 LHGKVLDDG-GGSLSQIIAGMEWAVEKDADVVSMSLGGTYY---S--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGS 145 (254)
T ss_pred EEEEEecCC-CCcHHHHHHHHHHHHhCCCCEEEECCCcCCC---C--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCC
Confidence 999999877 4788999999999999999999999998762 2 4566666555554 6999999999999876666
Q ss_pred ccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccc
Q 007375 160 VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKG 239 (606)
Q Consensus 160 ~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 239 (606)
+...+++|+||++..+..... +..
T Consensus 146 pa~~~~vi~Vga~~~~~~~~~-----------------------------~s~--------------------------- 169 (254)
T cd07490 146 PGSAYAALSVGAVDRDDEDAW-----------------------------FSS--------------------------- 169 (254)
T ss_pred CccCCceeEEecccccCCccC-----------------------------ccC---------------------------
Confidence 667899999998753321000 000
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeee
Q 007375 240 KIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVT 319 (606)
Q Consensus 240 kivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~ 319 (606)
+
T Consensus 170 ------~------------------------------------------------------------------------- 170 (254)
T cd07490 170 ------F------------------------------------------------------------------------- 170 (254)
T ss_pred ------C-------------------------------------------------------------------------
Confidence 0
Q ss_pred cccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC
Q 007375 320 KYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN 399 (606)
Q Consensus 320 ~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~ 399 (606)
........+.+|... ....||||.|||.+|+++.... ...+.|..++|||||||+|||++|||+|++
T Consensus 171 ----g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~--------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~ 237 (254)
T cd07490 171 ----GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA--------NGDGQYTRLSGTSMAAPHVAGVAALLAAAH 237 (254)
T ss_pred ----cccccccccCCCCCc-cCCcCceEEeccCCeEccccCC--------CCCCCeeecccHHHHHHHHHHHHHHHHHHC
Confidence 001122223333321 4568999999999999865221 112789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcc
Q 007375 400 PTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 400 p~ls~~~ik~~L~~TA~ 416 (606)
|+|++.+||++|++||+
T Consensus 238 p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 238 PDLSPEQIKDALTETAY 254 (254)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 99999999999999984
No 21
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-41 Score=344.70 Aligned_cols=246 Identities=25% Similarity=0.294 Sum_probs=179.6
Q ss_pred CcccccccCC-CCcEEEEecCCCCCCcccccccccC--------CCCCCCCCCChhhHHHhhccCCcCCCcccccCCcce
Q 007375 1 MTKIWVQFQH-GGKELAMPETTTYPSAAIEDDVVAN--------GQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTA 71 (606)
Q Consensus 1 ~~~~w~~~~~-~Gv~VaViDtGi~~h~d~~~~~~~~--------~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~ 71 (606)
++++|+++.+ +||+|+|||||++.|+.|....... .....|+.|||||||+++
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~~~~~~~~~~~~~~~~~~~~~~D~~gHGT~vag~i------------------ 71 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPFFESRGYQVRVVLAPGATDPACDENGHGTGESANL------------------ 71 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCchhhcCCccceeecCCCCCCCCCCCCCcchheeece------------------
Confidence 3678999876 9999999999999555466543221 134567899999999865
Q ss_pred eeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCC-------CCCCHHHHHHHHhHhcCcE
Q 007375 72 IGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRP-------LTDDPIALGAFHAVEHGIT 144 (606)
Q Consensus 72 ~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~-------~~~~~~~~~~~~a~~~Gv~ 144 (606)
.||||+|+|+.+|++.. ...++++||++|++++++|||||||........ .....+..++.++.++|++
T Consensus 72 ~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~ 147 (298)
T cd07494 72 FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIV 147 (298)
T ss_pred eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcE
Confidence 48999999999999864 456789999999999999999999986421010 1123577788888999999
Q ss_pred EEEecCCCCCCCCccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCcccc
Q 007375 145 VVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAA 224 (606)
Q Consensus 145 vV~aAGN~G~~~~~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 224 (606)
||+||||++. .++...|++|+||++..+..- ..
T Consensus 148 vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g---------~~----------------------------------- 180 (298)
T cd07494 148 VVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG---------AR----------------------------------- 180 (298)
T ss_pred EEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC---------cc-----------------------------------
Confidence 9999999974 457778999999997433200 00
Q ss_pred CCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhc
Q 007375 225 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINS 304 (606)
Q Consensus 225 ~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~ 304 (606)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCce----------------eeCCCceEeeecCCCCCCCCC
Q 007375 305 KRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDI----------------TAPGVNILAAWMGNDTGEAPE 368 (606)
Q Consensus 305 ~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI----------------~APG~~I~sa~~~~~~~~~~~ 368 (606)
......+.|+|. ..+++.|||+ +|||..|.++..... ..
T Consensus 181 -----------------~~~~~~~~~~s~----~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~----~~ 235 (298)
T cd07494 181 -----------------RASSYASGFRSK----IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP----DG 235 (298)
T ss_pred -----------------cccccccCcccc----cCCCCccCccccccCcCCcccccccccCCCcceeccccCCC----CC
Confidence 000000111111 1245667776 479999876543210 00
Q ss_pred CCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccCCC
Q 007375 369 GKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNN 420 (606)
Q Consensus 369 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~~~~~ 420 (606)
......|..++|||||||||||++|||+|++|+|+++|||.+|++||+++..
T Consensus 236 ~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 236 TPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 1122679999999999999999999999999999999999999999998754
No 22
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.8e-41 Score=335.86 Aligned_cols=232 Identities=29% Similarity=0.353 Sum_probs=188.9
Q ss_pred cEEEEecCCCC-CCcccccc--ccc------CCCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEE
Q 007375 13 KELAMPETTTY-PSAAIEDD--VVA------NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVY 83 (606)
Q Consensus 13 v~VaViDtGi~-~h~d~~~~--~~~------~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~ 83 (606)
|+|||||+|++ .||+|.+. ... ++..+.|..+|||||||||+|+..+ ...+.||||+|+|+.+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~~--------~~~~~Gvap~a~i~~~ 72 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPKLVPGWNFVSNNDPTSDIDGHGTACAGVAAAVGNN--------GLGVAGVAPGAKLMPV 72 (242)
T ss_pred CEEEEecCCCCCCChhhccCcCccCCccccCCCCCCCCCCCCHHHHHHHHHhccCC--------CceeEeECCCCEEEEE
Confidence 68999999997 99999983 222 2233567899999999999997521 3346899999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHh-cCcEEEEecCCCCCCCCccccC
Q 007375 84 RVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE-HGITVVCSAGNDGPSSGSVVNF 162 (606)
Q Consensus 84 kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~-~Gv~vV~aAGN~G~~~~~~~~~ 162 (606)
|++...+.+...++.+++++|++.+++|||||||.... .......+..++..+.+ +|+++|+||||+|......+..
T Consensus 73 ~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~--~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~ 150 (242)
T cd07498 73 RIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDS--TESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAA 150 (242)
T ss_pred EEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCC--CchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcC
Confidence 99987756788899999999999999999999998763 23445667777788888 9999999999999876666677
Q ss_pred CCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEE
Q 007375 163 APWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIV 242 (606)
Q Consensus 163 ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 242 (606)
.+++|+||+.+.
T Consensus 151 ~~~vi~Vga~~~-------------------------------------------------------------------- 162 (242)
T cd07498 151 NPSVIAVAATDS-------------------------------------------------------------------- 162 (242)
T ss_pred CCCeEEEEEeCC--------------------------------------------------------------------
Confidence 899999998532
Q ss_pred EEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeeccc
Q 007375 243 LCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYK 322 (606)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~ 322 (606)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCC
Q 007375 323 PAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTF 402 (606)
Q Consensus 323 ~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~l 402 (606)
.+.++.||++||.. |++|||.++.......... .....+.|..++|||||||+|||++|||+|++|+|
T Consensus 163 -~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~---~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l 230 (242)
T cd07498 163 -NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA---GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNL 230 (242)
T ss_pred -CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc---ccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCC
Confidence 12467899999987 9999999998875432110 11223778999999999999999999999999999
Q ss_pred CHHHHHHHHHhh
Q 007375 403 SPSEIKSAVMTT 414 (606)
Q Consensus 403 s~~~ik~~L~~T 414 (606)
+++|||++|++|
T Consensus 231 ~~~~i~~~L~~t 242 (242)
T cd07498 231 TPAEVEDILTST 242 (242)
T ss_pred CHHHHHHHHHhC
Confidence 999999999975
No 23
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=5.6e-41 Score=337.26 Aligned_cols=225 Identities=32% Similarity=0.465 Sum_probs=188.9
Q ss_pred ccccCCCCcEEEEecCCCC-CCcccccccccC-----CCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCC
Q 007375 5 WVQFQHGGKELAMPETTTY-PSAAIEDDVVAN-----GQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGS 78 (606)
Q Consensus 5 w~~~~~~Gv~VaViDtGi~-~h~d~~~~~~~~-----~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A 78 (606)
|...+|+||+|+|||+|++ .||+|.+..... .....|..+|||||||||+++. .||||+|
T Consensus 19 ~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a 84 (255)
T cd04077 19 YDSSTGSGVDVYVLDTGIRTTHVEFGGRAIWGADFVGGDPDSDCNGHGTHVAGTVGGKT--------------YGVAKKA 84 (255)
T ss_pred ecCCCCCCcEEEEEcCCCCCCChhhhCCeeeeeecCCCCCCCCCCccHHHHHHHHHccc--------------cCcCCCC
Confidence 3445569999999999997 899998764431 1225778899999999999863 5899999
Q ss_pred eEEEEEeeCCCCCCCHHHHHHHHHHHHHC-----CCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCC
Q 007375 79 RIAVYRVCSPEYGCTGSNILAAFDDAIAD-----GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDG 153 (606)
Q Consensus 79 ~L~~~kv~~~~~~~~~~~i~~ai~~A~~~-----gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G 153 (606)
+|+.+|+++..+....+.++++|+++++. +++|||+|||... ...+..++..+.++|+++|+||||+|
T Consensus 85 ~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-------~~~~~~~~~~~~~~g~liV~aaGN~g 157 (255)
T cd04077 85 NLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-------STALDAAVAAAVNAGVVVVVAAGNSN 157 (255)
T ss_pred eEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 99999999987667888999999999987 4899999999754 25677777889999999999999999
Q ss_pred CCC-CccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCc
Q 007375 154 PSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSL 232 (606)
Q Consensus 154 ~~~-~~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~ 232 (606)
... ...+...+++|+||+...
T Consensus 158 ~~~~~~~pa~~~~vi~Vga~~~---------------------------------------------------------- 179 (255)
T cd04077 158 QDACNYSPASAPEAITVGATDS---------------------------------------------------------- 179 (255)
T ss_pred CCCCCcCccCCCceEEEeccCC----------------------------------------------------------
Confidence 765 344556689999987532
Q ss_pred ccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEE
Q 007375 233 AGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATI 312 (606)
Q Consensus 233 ~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i 312 (606)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHH
Q 007375 313 LPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVV 392 (606)
Q Consensus 313 ~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 392 (606)
.+..+.||++||.. ||+|||.+|.++..... ..|..++|||||||+|||++
T Consensus 180 -----------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~----------~~~~~~~GTS~Aap~vaG~~ 230 (255)
T cd04077 180 -----------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD----------TATATLSGTSMAAPHVAGLA 230 (255)
T ss_pred -----------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC----------CcEEeeCcHHHHHHHHHHHH
Confidence 12467899999987 99999999999887421 78999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHhhccc
Q 007375 393 AAIKHQNPTFSPSEIKSAVMTTATQ 417 (606)
Q Consensus 393 ALl~~~~p~ls~~~ik~~L~~TA~~ 417 (606)
|||+|++|++++++||++|++||++
T Consensus 231 All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 231 AYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred HHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9999999999999999999999974
No 24
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.4e-41 Score=338.17 Aligned_cols=244 Identities=22% Similarity=0.216 Sum_probs=177.5
Q ss_pred CcccccccCC--CCcEEEEecCCCC-CCcccccccccCC--CCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeec
Q 007375 1 MTKIWVQFQH--GGKELAMPETTTY-PSAAIEDDVVANG--QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGS 75 (606)
Q Consensus 1 ~~~~w~~~~~--~Gv~VaViDtGi~-~h~d~~~~~~~~~--~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvA 75 (606)
++++|+...+ +||+|+|+|+|++ .||||.++..... ..+.|+.+|||||||||+|.. +...+.|||
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~~~~~~~~d~~gHGT~VAGiIaa~~---------n~~G~~GvA 74 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITLISGLTDQADSDHGTAVLGIIVAKD---------NGIGVTGIA 74 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccccCCCCCCCCCCCcchhheeeeeec---------CCCceeeec
Confidence 3578988664 8899999999998 8999988765432 225788999999999999863 223358999
Q ss_pred CCCeEEEEEeeCCCCCCCHHHHHHHHHHHHH----CCCcEEEecccCCCCCCCC---CCCCHHHHHHHHhHhcCcEEEEe
Q 007375 76 PGSRIAVYRVCSPEYGCTGSNILAAFDDAIA----DGVDVLSLSLGGSAGIVRP---LTDDPIALGAFHAVEHGITVVCS 148 (606)
Q Consensus 76 P~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~----~gvdVIn~S~G~~~~~~~~---~~~~~~~~~~~~a~~~Gv~vV~a 148 (606)
|+|+|+.+|++. ..+++++|++|++ .++.+||||||........ .....+..++.++.++|+++|+|
T Consensus 75 p~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~A 148 (277)
T cd04843 75 HGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEA 148 (277)
T ss_pred cCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEe
Confidence 999999999975 2356667777776 4567899999986421000 12234556777888999999999
Q ss_pred cCCCCCCCCccc-------------cCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCC
Q 007375 149 AGNDGPSSGSVV-------------NFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAK 215 (606)
Q Consensus 149 AGN~G~~~~~~~-------------~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 215 (606)
|||++....... ...|++|+|||+..+
T Consensus 149 AGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~---------------------------------------- 188 (277)
T cd04843 149 AGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST---------------------------------------- 188 (277)
T ss_pred CCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC----------------------------------------
Confidence 999986421111 012456666654210
Q ss_pred cCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHH
Q 007375 216 KDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEA 295 (606)
Q Consensus 216 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g 295 (606)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcc
Q 007375 296 AEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLF 375 (606)
Q Consensus 296 ~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y 375 (606)
....++.||++|+.. ||.|||++|+++.+...... .....+.|
T Consensus 189 ---------------------------~~~~~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~~--~~~~~~~~ 231 (277)
T cd04843 189 ---------------------------TGHTRLAFSNYGSRV--------DVYGWGENVTTTGYGDLQDL--GGENQDYT 231 (277)
T ss_pred ---------------------------CCCccccccCCCCcc--------ceEcCCCCeEecCCCCcccc--cCCCCcce
Confidence 011378999999976 99999999999987632110 01112345
Q ss_pred eeeccccchhhHHHHHHHHHHh----h-CCCCCHHHHHHHHHhhcc
Q 007375 376 NVISGTSMSCPHISGVVAAIKH----Q-NPTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 376 ~~~sGTSmAaP~VAG~aALl~~----~-~p~ls~~~ik~~L~~TA~ 416 (606)
..++|||||||||||++|||++ + +|+|+++|||++|+.|+.
T Consensus 232 ~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 232 DSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred eeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 7899999999999999999975 3 499999999999999974
No 25
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-40 Score=339.82 Aligned_cols=260 Identities=27% Similarity=0.330 Sum_probs=184.1
Q ss_pred ccCCCCcEEEEecCCCC-CCcccccccccC-----CCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeE
Q 007375 7 QFQHGGKELAMPETTTY-PSAAIEDDVVAN-----GQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRI 80 (606)
Q Consensus 7 ~~~~~Gv~VaViDtGi~-~h~d~~~~~~~~-----~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L 80 (606)
.++|+||+|+|||+|++ .||+|.+..... ...+.|..||||||||||+|+.. .+...||||+|+|
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~---------~~~~~GvAp~a~i 74 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRDITTKSFVGGEDVQDGHGHGTHCAGTIFGRDV---------PGPRYGVARGAEI 74 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCcccCcccCCCCCCCCCCCcHHHHHHHHhcccC---------CCcccccCCCCEE
Confidence 45679999999999997 999998765532 23457889999999999999752 2345799999999
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCC-------CCCCCCHHHHHHHHh---------------
Q 007375 81 AVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIV-------RPLTDDPIALGAFHA--------------- 138 (606)
Q Consensus 81 ~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~-------~~~~~~~~~~~~~~a--------------- 138 (606)
+.+|++.........++++||++|++.+++|||||||...... .......++.....+
T Consensus 75 ~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (297)
T cd07480 75 ALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAA 154 (297)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999998776677788999999999999999999999854100 011112233333333
Q ss_pred HhcCcEEEEecCCCCCCCCcccc-----CCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccC
Q 007375 139 VEHGITVVCSAGNDGPSSGSVVN-----FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKS 213 (606)
Q Consensus 139 ~~~Gv~vV~aAGN~G~~~~~~~~-----~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~ 213 (606)
.++|++||+||||+|........ ..++++.|+++..
T Consensus 155 ~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~--------------------------------------- 195 (297)
T cd07480 155 LARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGA--------------------------------------- 195 (297)
T ss_pred hcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECC---------------------------------------
Confidence 67899999999999854322211 1122333332211
Q ss_pred CCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHH
Q 007375 214 AKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSK 293 (606)
Q Consensus 214 ~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~ 293 (606)
T Consensus 196 -------------------------------------------------------------------------------- 195 (297)
T cd07480 196 -------------------------------------------------------------------------------- 195 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCC
Q 007375 294 EAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPP 373 (606)
Q Consensus 294 ~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 373 (606)
.+....|+++.+ ....||||+|||.+|+++.+. +
T Consensus 196 ------------------------------~~~~~~~~~~~~----~~~~~~dv~ApG~~i~s~~~~------------~ 229 (297)
T cd07480 196 ------------------------------LGRTGNFSAVAN----FSNGEVDIAAPGVDIVSAAPG------------G 229 (297)
T ss_pred ------------------------------CCCCCCccccCC----CCCCceEEEeCCCCeEeecCC------------C
Confidence 011112222222 123478999999999999887 8
Q ss_pred cceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccCCCCCCCccCCCCCCCCCCCccccccccc
Q 007375 374 LFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTT 446 (606)
Q Consensus 374 ~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~in~~ 446 (606)
.|..++|||||||+|||++|||+|++|++++.+++.+|+......... .........++|+|++++.
T Consensus 230 ~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 230 GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC------CCCCCCChhhcCCceeecC
Confidence 899999999999999999999999999999988888887433221100 0011236678999999875
No 26
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-40 Score=337.32 Aligned_cols=232 Identities=28% Similarity=0.389 Sum_probs=184.2
Q ss_pred CcEEEEecCCCC-CCccccccccc------C--------------------------------CCCCCCCCCChhhHHHh
Q 007375 12 GKELAMPETTTY-PSAAIEDDVVA------N--------------------------------GQSPRDMVGHGTHVAST 52 (606)
Q Consensus 12 Gv~VaViDtGi~-~h~d~~~~~~~------~--------------------------------~~~~~D~~GHGThVAGi 52 (606)
||+|||||+||+ .||+|...+.. . .....|..+||||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgi 80 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVAGT 80 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHHHHHH
Confidence 799999999997 99999876511 0 01123457899999999
Q ss_pred hccCCcCCCcccccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHH----------HCCCcEEEecccCCCCC
Q 007375 53 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI----------ADGVDVLSLSLGGSAGI 122 (606)
Q Consensus 53 iag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~----------~~gvdVIn~S~G~~~~~ 122 (606)
|+|...+ ...+.||||+|+|+.+|+++.. +....++++|++||+ .++++|||||||....
T Consensus 81 iaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~-~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~- 150 (285)
T cd07496 81 IAAVTNN--------GVGVAGVAWGARILPVRVLGKC-GGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGA- 150 (285)
T ss_pred HhCcCCC--------CCCceeecCCCeEEEEEEecCC-CCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCC-
Confidence 9998631 2345899999999999999877 448889999999998 4578999999998652
Q ss_pred CCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCC-CccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCC
Q 007375 123 VRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 201 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~-~~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 201 (606)
. ...+..++..+.++|++||+||||++... ...+...+++|+||++..
T Consensus 151 --~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------------------- 199 (285)
T cd07496 151 --C--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL--------------------------- 199 (285)
T ss_pred --C--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC---------------------------
Confidence 1 45777888899999999999999999765 445556788999987421
Q ss_pred CCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCccccc
Q 007375 202 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 281 (606)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 281 (606)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCC
Q 007375 282 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 361 (606)
Q Consensus 282 ~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 361 (606)
.+.++.||++|+.. ||.|||.+|.++....
T Consensus 200 ------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~ 229 (285)
T cd07496 200 ------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCASDVNGD 229 (285)
T ss_pred ------------------------------------------CCCcccccCCCCCC--------CEEeCCCCccccCCCC
Confidence 13567899999977 9999999999887653
Q ss_pred CCCC---CCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 007375 362 DTGE---APEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 414 (606)
Q Consensus 362 ~~~~---~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~T 414 (606)
.... .........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 230 GYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2110 0022233678999999999999999999999999999999999999876
No 27
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=6.1e-40 Score=324.48 Aligned_cols=219 Identities=30% Similarity=0.462 Sum_probs=186.1
Q ss_pred CcEEEEecCCCC-CCcccccccccCC-------CCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEE
Q 007375 12 GKELAMPETTTY-PSAAIEDDVVANG-------QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVY 83 (606)
Q Consensus 12 Gv~VaViDtGi~-~h~d~~~~~~~~~-------~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~ 83 (606)
||+|+|||+|++ .|++|.+.+.... ....|..+|||||||||++... ...+.|+||+|+|+.+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~HGT~vA~ii~~~~~---------~~~~~giap~a~i~~~ 71 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDN---------GVGVVGVAPEADLYAV 71 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccccCcccccCCCCCCCCCCCCCHHHHHHHHhcccC---------CCccEeeCCCCEEEEE
Confidence 799999999997 9999987654311 3456789999999999999752 2356899999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCCCcc--cc
Q 007375 84 RVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV--VN 161 (606)
Q Consensus 84 kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~~~~--~~ 161 (606)
|++...+.....++++++++|++.+++|||||||.... ...+..++..+.++|+++|+||||++...... +.
T Consensus 72 ~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~------~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa 145 (229)
T cd07477 72 KVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD------SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPA 145 (229)
T ss_pred EEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCC
Confidence 99988766777899999999999999999999997642 24566777888899999999999999766554 66
Q ss_pred CCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceE
Q 007375 162 FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKI 241 (606)
Q Consensus 162 ~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki 241 (606)
..+++|+||++..+
T Consensus 146 ~~~~vi~Vga~~~~------------------------------------------------------------------ 159 (229)
T cd07477 146 KYPSVIAVGAVDSN------------------------------------------------------------------ 159 (229)
T ss_pred CCCCEEEEEeecCC------------------------------------------------------------------
Confidence 67899999975321
Q ss_pred EEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecc
Q 007375 242 VLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKY 321 (606)
Q Consensus 242 vl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~ 321 (606)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCC
Q 007375 322 KPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPT 401 (606)
Q Consensus 322 ~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 401 (606)
+.+..||++|+.. |+.|||.+|+++++. +.|..++|||||||+|||++|||+|++|+
T Consensus 160 ---~~~~~~s~~g~~~--------~~~apg~~i~~~~~~------------~~~~~~~GTS~Aap~vag~~All~~~~~~ 216 (229)
T cd07477 160 ---NNRASFSSTGPEV--------ELAAPGVDILSTYPN------------NDYAYLSGTSMATPHVAGVAALVWSKRPE 216 (229)
T ss_pred ---CCcCCccCCCCCc--------eEEeCCCCeEEecCC------------CCEEEEccHHHHHHHHHHHHHHHHHhCCC
Confidence 2455789999865 999999999999887 78999999999999999999999999999
Q ss_pred CCHHHHHHHHHhh
Q 007375 402 FSPSEIKSAVMTT 414 (606)
Q Consensus 402 ls~~~ik~~L~~T 414 (606)
+++.+||++|++|
T Consensus 217 ~~~~~i~~~l~~t 229 (229)
T cd07477 217 LTNAQVRQALNKT 229 (229)
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999976
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-39 Score=328.41 Aligned_cols=224 Identities=29% Similarity=0.419 Sum_probs=186.1
Q ss_pred CCcEEEEecCCCC-CCcccccccccC----------------------------CCCCCCCCCChhhHHHhhccCCcCCC
Q 007375 11 GGKELAMPETTTY-PSAAIEDDVVAN----------------------------GQSPRDMVGHGTHVASTAAGQAVQGA 61 (606)
Q Consensus 11 ~Gv~VaViDtGi~-~h~d~~~~~~~~----------------------------~~~~~D~~GHGThVAGiiag~~~~~~ 61 (606)
+||+|+|||+||+ .||+|.+.++.+ ..++.|..||||||||||+|....
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~va~ii~~~~~~-- 79 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNN-- 79 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcccCCCcccccCCCCCCCCCCCcHHHHHHHHHCcCCC--
Confidence 7999999999996 999999865421 123567889999999999997532
Q ss_pred cccccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhc
Q 007375 62 SYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH 141 (606)
Q Consensus 62 ~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~ 141 (606)
...+.|+||+|+|+.+|++...+.+...+++++|++|++.+++|||+|||.... ...+..++.++.++
T Consensus 80 ------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~------~~~~~~~~~~~~~~ 147 (259)
T cd07473 80 ------GIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP------SQALRDAIARAIDA 147 (259)
T ss_pred ------CCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC------CHHHHHHHHHHHhC
Confidence 234589999999999999988766888899999999999999999999998752 46777788889999
Q ss_pred CcEEEEecCCCCCCC---Ccccc--CCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCc
Q 007375 142 GITVVCSAGNDGPSS---GSVVN--FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKK 216 (606)
Q Consensus 142 Gv~vV~aAGN~G~~~---~~~~~--~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 216 (606)
|+++|+||||+|... ..++. ..+++|+||+...
T Consensus 148 g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------------------------------ 185 (259)
T cd07473 148 GILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------------------------------ 185 (259)
T ss_pred CCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------------------------------
Confidence 999999999998652 22222 2467888886421
Q ss_pred CCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHH
Q 007375 217 DDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAA 296 (606)
Q Consensus 217 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~ 296 (606)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcce
Q 007375 297 EILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFN 376 (606)
Q Consensus 297 ~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~ 376 (606)
.+.++.||++||. +||+.|||.++++..+. +.|.
T Consensus 186 ---------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~------------~~~~ 219 (259)
T cd07473 186 ---------------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPG------------GGYG 219 (259)
T ss_pred ---------------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCC------------CcEE
Confidence 1345568999985 46999999999997765 7899
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 007375 377 VISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 377 ~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~ 416 (606)
.++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 220 ~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 220 YMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999984
No 29
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=9.9e-40 Score=335.18 Aligned_cols=261 Identities=24% Similarity=0.299 Sum_probs=191.7
Q ss_pred cCCCCcEEEEecCCCC-CCccccccc----------c----cCCCCCCCCCCChhhHHHhhccCCcCCCcccccCCccee
Q 007375 8 FQHGGKELAMPETTTY-PSAAIEDDV----------V----ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAI 72 (606)
Q Consensus 8 ~~~~Gv~VaViDtGi~-~h~d~~~~~----------~----~~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~ 72 (606)
.+|+||+|||||+|++ .||+|.+.. . .......|..+|||||||||+|+...... ...+.
T Consensus 4 ~tG~gv~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~ 78 (293)
T cd04842 4 LTGKGQIVGVADTGLDTNHCFFYDPNFNKTNLFHRKIVRYDSLSDTKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYK 78 (293)
T ss_pred cCCcCCEEEEEecCCCCCCCcccCCCcCcCccCcccEEEeeccCCCCCCCCCCcchhheeeccCCcCCCc-----ccccc
Confidence 3459999999999996 999995521 0 01123347799999999999998633211 11568
Q ss_pred eecCCCeEEEEEeeCCCC-CCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhH-h-cCcEEEEec
Q 007375 73 GGSPGSRIAVYRVCSPEY-GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAV-E-HGITVVCSA 149 (606)
Q Consensus 73 GvAP~A~L~~~kv~~~~~-~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~-~-~Gv~vV~aA 149 (606)
||||+|+|+.+|++...+ .....++.++++++.+.+++|||||||.... . .......++.++. + +|++||+||
T Consensus 79 GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~---~-~~~~~~~~~~~~~~~~~g~lvV~aA 154 (293)
T cd04842 79 GVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVN---N-GYTLLARAYDQFAYNNPDILFVFSA 154 (293)
T ss_pred cccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCc---c-ccchHHHHHHHHHHhCCCeEEEEeC
Confidence 999999999999988763 2456678899999999999999999998762 1 1233344444433 3 799999999
Q ss_pred CCCCCCCC---ccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCC
Q 007375 150 GNDGPSSG---SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARN 226 (606)
Q Consensus 150 GN~G~~~~---~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 226 (606)
||+|.... ..+...+++|+||++........ ..
T Consensus 155 GN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~--------------------------------------------~~ 190 (293)
T cd04842 155 GNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG--------------------------------------------EG 190 (293)
T ss_pred CCCCCCCCccccCcccccceEEEeeccCCCcccc--------------------------------------------cc
Confidence 99997654 45556799999999754321000 00
Q ss_pred CCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCC
Q 007375 227 CDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKR 306 (606)
Q Consensus 227 c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~ 306 (606)
|..
T Consensus 191 ~~~----------------------------------------------------------------------------- 193 (293)
T cd04842 191 GLG----------------------------------------------------------------------------- 193 (293)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred CceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhh
Q 007375 307 NPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 386 (606)
Q Consensus 307 ~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 386 (606)
.......++.||++||+. ++++||||+|||++|+++..... .........|..++|||||||
T Consensus 194 -------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~---~~~~~~~~~~~~~~GTS~AaP 255 (293)
T cd04842 194 -------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG---GIGDTSDSAYTSKSGTSMATP 255 (293)
T ss_pred -------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC---CCCCCChhheeecCcHHHHHH
Confidence 001134788999999998 79999999999999999975420 001122367899999999999
Q ss_pred HHHHHHHHHHhhC-----C---CCCHHHHHHHHHhhcc
Q 007375 387 HISGVVAAIKHQN-----P---TFSPSEIKSAVMTTAT 416 (606)
Q Consensus 387 ~VAG~aALl~~~~-----p---~ls~~~ik~~L~~TA~ 416 (606)
+|||++|||+|++ | .+++.+||++|++||+
T Consensus 256 ~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 256 LVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 9999999999985 4 6677899999999985
No 30
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-39 Score=321.46 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=115.9
Q ss_pred CCCcEEEEecCCCC-CCcccccccccCC-------------CCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeec
Q 007375 10 HGGKELAMPETTTY-PSAAIEDDVVANG-------------QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGS 75 (606)
Q Consensus 10 ~~Gv~VaViDtGi~-~h~d~~~~~~~~~-------------~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvA 75 (606)
+++|+|||||+||+ .||||.+.+.... ....|..||||||||||+ |+|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiI~------------------gva 63 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIGGKSFSPYEGDGNKVSPYYVSADGHGTAMARMIC------------------RIC 63 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHHHH------------------HHC
Confidence 48999999999997 8999987633211 112468899999999995 579
Q ss_pred CCCeEEEEEeeCCCC------CCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEec
Q 007375 76 PGSRIAVYRVCSPEY------GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSA 149 (606)
Q Consensus 76 P~A~L~~~kv~~~~~------~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aA 149 (606)
|+|+|+.+|+++..+ .+....+++||+||+++|+||||||||.............+..++.+|.++|++||+||
T Consensus 64 p~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaA 143 (247)
T cd07491 64 PSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSA 143 (247)
T ss_pred CCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEec
Confidence 999999999998763 35677899999999999999999999986521111235678888899999999999999
Q ss_pred CCCCCCCC-ccc--cCCCceEEeeccc
Q 007375 150 GNDGPSSG-SVV--NFAPWIFTVAAST 173 (606)
Q Consensus 150 GN~G~~~~-~~~--~~ap~visVga~~ 173 (606)
||+|.... .++ ...|++|+|||+.
T Consensus 144 GN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 144 SDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred CCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 99997654 333 3458999999853
No 31
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-38 Score=313.68 Aligned_cols=210 Identities=20% Similarity=0.271 Sum_probs=173.0
Q ss_pred CcEEEEecCCCC-CCcccccccccC-----------CCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCe
Q 007375 12 GKELAMPETTTY-PSAAIEDDVVAN-----------GQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSR 79 (606)
Q Consensus 12 Gv~VaViDtGi~-~h~d~~~~~~~~-----------~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~ 79 (606)
||+|||||+||+ .||+|.+..... .....|..||||||||||++. +|+++
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~------------------~p~~~ 62 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDGEVTIDLEIIVVSAEGGDKDGHGTACAGIIKKY------------------APEAE 62 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccccccccccccccCCCCCCCCCCcHHHHHHHHHcc------------------CCCCe
Confidence 799999999996 999998765431 234557889999999999864 69999
Q ss_pred EEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCCCcc
Q 007375 80 IAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV 159 (606)
Q Consensus 80 L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~~~~ 159 (606)
|+.+|+++..+.+...++++||+||++++++|||||||.... .....+..++.++.++|+++|+||||++.... .
T Consensus 63 i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~----~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~ 137 (222)
T cd07492 63 IGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD----RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-P 137 (222)
T ss_pred EEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC----CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-C
Confidence 999999988866888999999999999999999999998752 23356777888888899999999999986433 2
Q ss_pred ccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccc
Q 007375 160 VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKG 239 (606)
Q Consensus 160 ~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 239 (606)
+...+.+|+|++...+.
T Consensus 138 Pa~~~~vi~V~~~~~~~--------------------------------------------------------------- 154 (222)
T cd07492 138 PASFPNVIGVKSDTADD--------------------------------------------------------------- 154 (222)
T ss_pred CccCCceEEEEecCCCC---------------------------------------------------------------
Confidence 45567888888642110
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeee
Q 007375 240 KIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVT 319 (606)
Q Consensus 240 kivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~ 319 (606)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC
Q 007375 320 KYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN 399 (606)
Q Consensus 320 ~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~ 399 (606)
.. +.+++ ++|+.|||.+|+++.+. +.|..++|||||||+|||++|||+|++
T Consensus 155 ------~~---~~~~~--------~~~~~apg~~i~~~~~~------------~~~~~~~GTS~Aap~vaG~~All~~~~ 205 (222)
T cd07492 155 ------PK---SFWYI--------YVEFSADGVDIIAPAPH------------GRYLTVSGNSFAAPHVTGMVALLLSEK 205 (222)
T ss_pred ------Cc---ccccC--------CceEEeCCCCeEeecCC------------CCEEEeccHHHHHHHHHHHHHHHHHhC
Confidence 00 11122 34999999999999887 789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcc
Q 007375 400 PTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 400 p~ls~~~ik~~L~~TA~ 416 (606)
|+|+++|||++|+.||+
T Consensus 206 p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 206 PDIDANDLKRLLQRLAV 222 (222)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 99999999999999985
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=7.5e-40 Score=334.15 Aligned_cols=262 Identities=29% Similarity=0.440 Sum_probs=201.0
Q ss_pred EEEEecCCCC-CCcccc-ccccc----------C----CCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCC
Q 007375 14 ELAMPETTTY-PSAAIE-DDVVA----------N----GQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPG 77 (606)
Q Consensus 14 ~VaViDtGi~-~h~d~~-~~~~~----------~----~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~ 77 (606)
+|+|||+||+ .|++|. ..+.. . .....|..+|||||||||+|.. . . ......|+||+
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~-~-~-----~~~~~~Gva~~ 73 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFIWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG-G-N-----NGPGINGVAPN 73 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEEEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-S-S-----SSSSETCSSTT
T ss_pred CEEEEcCCcCCCChhHccCCcccccccceeeccCCCCCcCccccCCCccchhhhhccccc-c-c-----ccccccccccc
Confidence 6999999995 999999 44321 1 1345678899999999999986 2 2 23345899999
Q ss_pred CeEEEEEeeCCCCCCCHHHHHHHHHHHH-HCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCC
Q 007375 78 SRIAVYRVCSPEYGCTGSNILAAFDDAI-ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS 156 (606)
Q Consensus 78 A~L~~~kv~~~~~~~~~~~i~~ai~~A~-~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~ 156 (606)
|+|+.+|++...+ ....+++++|++++ +.+++|||+|||...........+.+..+.+.+.++|+++|+||||+|+..
T Consensus 74 a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~ 152 (282)
T PF00082_consen 74 AKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPND 152 (282)
T ss_dssp SEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBT
T ss_pred ccccccccccccc-cccccccchhhhhhhccCCccccccccccccccccccccccccccccccccCcceeeccccccccc
Confidence 9999999987763 77888999999999 899999999999832100122233455666788899999999999998766
Q ss_pred Cc---cccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcc
Q 007375 157 GS---VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLA 233 (606)
Q Consensus 157 ~~---~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~ 233 (606)
.. .+...+++|+||+...
T Consensus 153 ~~~~~~Pa~~~~vi~Vg~~~~----------------------------------------------------------- 173 (282)
T PF00082_consen 153 DRNISFPASSPNVITVGAVDN----------------------------------------------------------- 173 (282)
T ss_dssp TBTGEBTTTSTTSEEEEEEET-----------------------------------------------------------
T ss_pred ccccccccccccccccccccc-----------------------------------------------------------
Confidence 53 3334578888887431
Q ss_pred cCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEe
Q 007375 234 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATIL 313 (606)
Q Consensus 234 ~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~ 313 (606)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHH
Q 007375 314 PTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVA 393 (606)
Q Consensus 314 ~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 393 (606)
...++.||++|+... ++++||||+|||.+|+++++... ...|..++|||||||+|||++|
T Consensus 174 ----------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~---------~~~~~~~~GTS~Aap~vag~~A 233 (282)
T PF00082_consen 174 ----------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSD---------RGSYTSFSGTSFAAPVVAGAAA 233 (282)
T ss_dssp ----------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTE---------SEEEEEEESHHHHHHHHHHHHH
T ss_pred ----------ccccccccccccccc-ccccccccccccccccccccccc---------cccccccCcCCchHHHHHHHHH
Confidence 125578999975432 68999999999999999887611 0347889999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhhcccCCCCCCCccCCCCCCCCCCCcccccccccccCC
Q 007375 394 AIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 450 (606)
Q Consensus 394 Ll~~~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~in~~~A~~ 450 (606)
||+|++|+|++.+||.+|++||.++.... ....+..||||+||+.+|++
T Consensus 234 ll~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 234 LLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999987321 12366788999999999874
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.2e-38 Score=327.33 Aligned_cols=133 Identities=32% Similarity=0.378 Sum_probs=103.4
Q ss_pred CcEEEEecCCCC-CCcccccccccC--------C------------CCCCCCCCChhhHHHhhccCCcCCCcccccCCcc
Q 007375 12 GKELAMPETTTY-PSAAIEDDVVAN--------G------------QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGT 70 (606)
Q Consensus 12 Gv~VaViDtGi~-~h~d~~~~~~~~--------~------------~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~ 70 (606)
.|+|||||+|++ .||+|.+.+... . ....|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~------------ 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQIAANGN------------ 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccccccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHHhcCCC------------
Confidence 489999999997 999999543211 0 1234668999999999998641
Q ss_pred eeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCC-----CCCCCHHHHHHHHhHhcCcEE
Q 007375 71 AIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR-----PLTDDPIALGAFHAVEHGITV 145 (606)
Q Consensus 71 ~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~-----~~~~~~~~~~~~~a~~~Gv~v 145 (606)
..||||+|+|+.+|+++..+.....+++++|++|++++++|||||||....... ....+.+..++..+.++|++|
T Consensus 69 ~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lv 148 (294)
T cd07482 69 IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIV 148 (294)
T ss_pred CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEE
Confidence 249999999999999988745588899999999999999999999998642101 111234566677788999999
Q ss_pred EEecCCCCCCC
Q 007375 146 VCSAGNDGPSS 156 (606)
Q Consensus 146 V~aAGN~G~~~ 156 (606)
|+||||+|...
T Consensus 149 v~AAGN~g~~~ 159 (294)
T cd07482 149 VAAAGNDGLDV 159 (294)
T ss_pred EEeCCCCCccc
Confidence 99999998643
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=2.9e-38 Score=324.89 Aligned_cols=239 Identities=22% Similarity=0.248 Sum_probs=175.7
Q ss_pred CcccccccCC-CCcEEEEecCCCC-CCccccccccc----------CCCCCC--CCCCChhhHHHhhccCCcCCCccccc
Q 007375 1 MTKIWVQFQH-GGKELAMPETTTY-PSAAIEDDVVA----------NGQSPR--DMVGHGTHVASTAAGQAVQGASYYGL 66 (606)
Q Consensus 1 ~~~~w~~~~~-~Gv~VaViDtGi~-~h~d~~~~~~~----------~~~~~~--D~~GHGThVAGiiag~~~~~~~~~G~ 66 (606)
++++|+.+.+ +||+|+|||+|++ .|++|.+.... ....+. |..||||||||||+|+...
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~vAgiiag~~~~------- 100 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRYDDDNSHGTRCAGEIAAVGNN------- 100 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccccccccccCCCCCCCCccccccccCcceeeEEEeecCC-------
Confidence 3578999555 9999999999997 99999877541 112233 7889999999999998522
Q ss_pred CCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCC-CCCCCHHHHHHHHhHh-----
Q 007375 67 AAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR-PLTDDPIALGAFHAVE----- 140 (606)
Q Consensus 67 ~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~-~~~~~~~~~~~~~a~~----- 140 (606)
.....||||+|+|+.+|++... ........++.++.+ .++|||||||....... .........++.++.+
T Consensus 101 -~~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~ 176 (297)
T cd04059 101 -GICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNG 176 (297)
T ss_pred -CcccccccccceEeEEEecCCc--cccHHHHHHHhcccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCC
Confidence 1135899999999999998764 333445556655544 56999999998653100 1122233444455443
Q ss_pred cCcEEEEecCCCCCCCCcc----ccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCc
Q 007375 141 HGITVVCSAGNDGPSSGSV----VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKK 216 (606)
Q Consensus 141 ~Gv~vV~aAGN~G~~~~~~----~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 216 (606)
+|++||+||||+|...... ....+++|+||++..
T Consensus 177 ~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~------------------------------------------ 214 (297)
T cd04059 177 KGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA------------------------------------------ 214 (297)
T ss_pred CceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC------------------------------------------
Confidence 6999999999999733221 123578888887532
Q ss_pred CCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHH
Q 007375 217 DDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAA 296 (606)
Q Consensus 217 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~ 296 (606)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCc-------eEeeecCCCCCCCCCC
Q 007375 297 EILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN-------ILAAWMGNDTGEAPEG 369 (606)
Q Consensus 297 ~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~-------I~sa~~~~~~~~~~~~ 369 (606)
.+.++.||++|+.. ++.|||.. |+++.+..
T Consensus 215 ---------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~-------- 251 (297)
T cd04059 215 ---------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGG-------- 251 (297)
T ss_pred ---------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCC--------
Confidence 13567899999987 89999987 66555431
Q ss_pred CCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 007375 370 KEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 370 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~ 416 (606)
....|..++|||||||+|||++|||+|+||+|++.|||.+|++||+
T Consensus 252 -~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 252 -NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred -CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 0156788999999999999999999999999999999999999985
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1.3e-37 Score=314.81 Aligned_cols=235 Identities=26% Similarity=0.334 Sum_probs=185.5
Q ss_pred CCCCcEEEEecCCCC-CCcccccccccCC----------CCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCC
Q 007375 9 QHGGKELAMPETTTY-PSAAIEDDVVANG----------QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPG 77 (606)
Q Consensus 9 ~~~Gv~VaViDtGi~-~h~d~~~~~~~~~----------~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~ 77 (606)
+|+|++|+|||+|++ .||+|.+...... ....|..+|||||||||+|+.. .....|+||+
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vagiiag~~~---------~~~~~GiAp~ 71 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVAVNDAGYASNGDGDSHGTHVAGVIAAARD---------GGGMHGVAPD 71 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccccccccCCCCCCCCChHHHHHHHHhcCcC---------CCCcccCCcC
Confidence 369999999999997 7999987754322 2345689999999999999862 2456899999
Q ss_pred CeEEEEEeeCCCC-CCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCC---------CCCCCHHHHHHHHhHhcCcEEEE
Q 007375 78 SRIAVYRVCSPEY-GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR---------PLTDDPIALGAFHAVEHGITVVC 147 (606)
Q Consensus 78 A~L~~~kv~~~~~-~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~---------~~~~~~~~~~~~~a~~~Gv~vV~ 147 (606)
|+|+.+|+++..+ ......+.++++++++.+++|||||||....... ....+.+......+.++|+++|+
T Consensus 72 a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~ 151 (267)
T cd04848 72 ATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVF 151 (267)
T ss_pred CEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEE
Confidence 9999999998764 4667788999999999999999999999763111 12456667777888899999999
Q ss_pred ecCCCCCCCCccc---------cCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCC
Q 007375 148 SAGNDGPSSGSVV---------NFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDD 218 (606)
Q Consensus 148 aAGN~G~~~~~~~---------~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (606)
||||++....... ...+++|+||++..+.
T Consensus 152 aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------------------------------------------ 189 (267)
T cd04848 152 AAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------------------------------------------ 189 (267)
T ss_pred eCCCCCCCCCccccccccccCccccCCEEEEEEecCCC------------------------------------------
Confidence 9999986543322 2346788888753321
Q ss_pred cCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHH
Q 007375 219 ANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEI 298 (606)
Q Consensus 219 ~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l 298 (606)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCceEEEeeCeeeecccCCCcccc--ccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcce
Q 007375 299 LAYINSKRNPVATILPTVSVTKYKPAPAIAY--FSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFN 376 (606)
Q Consensus 299 ~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~--fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~ 376 (606)
.... ||++|+.. -.+++.|||.+|.++.+.. ...|.
T Consensus 190 ---------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~----------~~~~~ 227 (267)
T cd04848 190 ---------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG----------GNGYG 227 (267)
T ss_pred ---------------------------Ccccccccccchhh-----hhheeecCcCceeecccCC----------CCccc
Confidence 1222 47777643 2357999999999998731 17789
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 007375 377 VISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 416 (606)
Q Consensus 377 ~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~ 416 (606)
.++|||||||+|||++||++|++|+|++++||++|++||+
T Consensus 228 ~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 228 RVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999985
No 36
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-38 Score=313.26 Aligned_cols=226 Identities=29% Similarity=0.414 Sum_probs=193.3
Q ss_pred ccccccCCCCcEEEEecCCCC-CCcccccccccCC-----CCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecC
Q 007375 3 KIWVQFQHGGKELAMPETTTY-PSAAIEDDVVANG-----QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSP 76 (606)
Q Consensus 3 ~~w~~~~~~Gv~VaViDtGi~-~h~d~~~~~~~~~-----~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP 76 (606)
.+|+...++||+..|+||||. .|+||..+...+- ....|++||||||||+|+++. .|||-
T Consensus 211 Y~Y~~~aG~gvtaYv~DTGVni~H~dFegRa~wGa~i~~~~~~~D~nGHGTH~AG~I~sKt--------------~GvAK 276 (501)
T KOG1153|consen 211 YVYEIDAGKGVTAYVLDTGVNIEHPDFEGRAIWGATIPPKDGDEDCNGHGTHVAGLIGSKT--------------FGVAK 276 (501)
T ss_pred EEeecccCCCeEEEEecccccccccccccceecccccCCCCcccccCCCcceeeeeeeccc--------------ccccc
Confidence 345555679999999999997 9999998866543 344789999999999999875 68999
Q ss_pred CCeEEEEEeeCCCCCCCHHHHHHHHHHHHHC---------CCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEE
Q 007375 77 GSRIAVYRVCSPEYGCTGSNILAAFDDAIAD---------GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVC 147 (606)
Q Consensus 77 ~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~---------gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~ 147 (606)
+++|+++||+.++|.+..+++++++|++++. +..|.|||+|+... -++..|++.|.+.|+++++
T Consensus 277 ~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S-------~aLn~AV~~A~~~Gi~fa~ 349 (501)
T KOG1153|consen 277 NSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS-------AALNMAVNAASERGIHFAV 349 (501)
T ss_pred ccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc-------HHHHHHHHHHhhcCeEEEE
Confidence 9999999999999999999999999999986 57899999998762 4778888999999999999
Q ss_pred ecCCCCCCCCc-cccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCC
Q 007375 148 SAGNDGPSSGS-VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARN 226 (606)
Q Consensus 148 aAGN~G~~~~~-~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 226 (606)
||||+..+.+. .+..+..+|+|||++.
T Consensus 350 AAGNe~eDAC~~SPass~~aITVGAst~---------------------------------------------------- 377 (501)
T KOG1153|consen 350 AAGNEHEDACNSSPASSKKAITVGASTK---------------------------------------------------- 377 (501)
T ss_pred cCCCcchhhhccCcccccccEEeccccc----------------------------------------------------
Confidence 99999866544 4456789999998642
Q ss_pred CCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCC
Q 007375 227 CDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKR 306 (606)
Q Consensus 227 c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~ 306 (606)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhh
Q 007375 307 NPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 386 (606)
Q Consensus 307 ~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 386 (606)
.+.++.||+||++. ||-|||++|+|+|-+.. .....+||||||+|
T Consensus 378 -----------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~----------~at~ilSGTSMasP 422 (501)
T KOG1153|consen 378 -----------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN----------NATAILSGTSMASP 422 (501)
T ss_pred -----------------ccchhhhcCcccee--------eeecCchhhhhhhhcCc----------cchheeecccccCc
Confidence 25889999999999 99999999999998743 56789999999999
Q ss_pred HHHHHHHHHHhhCCC---------CCHHHHHHHHHhhcc
Q 007375 387 HISGVVAAIKHQNPT---------FSPSEIKSAVMTTAT 416 (606)
Q Consensus 387 ~VAG~aALl~~~~p~---------ls~~~ik~~L~~TA~ 416 (606)
||||++|..+..+|. .++.++|..++.=..
T Consensus 423 hvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 423 HVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred chhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999999999999872 378888887776554
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=289.62 Aligned_cols=264 Identities=27% Similarity=0.388 Sum_probs=216.5
Q ss_pred ccccccCC-CCcEEEEecCCCC-CCcccccc----cccCCCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecC
Q 007375 3 KIWVQFQH-GGKELAMPETTTY-PSAAIEDD----VVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSP 76 (606)
Q Consensus 3 ~~w~~~~~-~Gv~VaViDtGi~-~h~d~~~~----~~~~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP 76 (606)
-+|+.+++ ++|+|||.|||+- .||-|++- .+.+...-.|.-||||.|||+|||... -.|.||
T Consensus 192 ~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvKERTNWTNE~tLdD~lgHGTFVAGvia~~~e------------c~gfa~ 259 (1033)
T KOG4266|consen 192 HLWKKGYTGAKVKVAIFDTGLRADHPHFRNVKERTNWTNEDTLDDNLGHGTFVAGVIAGRNE------------CLGFAS 259 (1033)
T ss_pred hHHhccccCCceEEEEeecccccCCccccchhhhcCCcCccccccCcccceeEeeeeccchh------------hcccCC
Confidence 48998887 9999999999995 99999754 333556667789999999999998742 257899
Q ss_pred CCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCC
Q 007375 77 GSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS 156 (606)
Q Consensus 77 ~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~ 156 (606)
+++|+++||+-+..-...+++++|+.||+..++||+|+|+|++. +.+-++-.-+.......|++|.|+||+||-.
T Consensus 260 d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD-----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLY 334 (1033)
T KOG4266|consen 260 DTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD-----FMDLPFVEKVWELTANNVIMVSAIGNDGPLY 334 (1033)
T ss_pred ccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc-----cccchHHHHHHhhccCcEEEEEecCCCCcce
Confidence 99999999998886788899999999999999999999999864 4555665555667789999999999999999
Q ss_pred CccccCCC--ceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCccc
Q 007375 157 GSVVNFAP--WIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAG 234 (606)
Q Consensus 157 ~~~~~~ap--~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~ 234 (606)
++..+++. .||.||..
T Consensus 335 GTLNNPaDQsDViGVGGI-------------------------------------------------------------- 352 (1033)
T KOG4266|consen 335 GTLNNPADQSDVIGVGGI-------------------------------------------------------------- 352 (1033)
T ss_pred eecCCcccccceeeeccc--------------------------------------------------------------
Confidence 99888763 35555531
Q ss_pred CcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEee
Q 007375 235 ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILP 314 (606)
Q Consensus 235 ~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~ 314 (606)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeeecccCCCccccccCCCCCCC----CCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHH
Q 007375 315 TVSVTKYKPAPAIAYFSARGPSPL----TRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISG 390 (606)
Q Consensus 315 ~~t~~~~~~~~~~a~fSS~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 390 (606)
+..+.++.|||||-+.. ..++.||||++-|.+|....-. .+...+||||.|+|.|||
T Consensus 353 -------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~------------~GCr~LSGTSVaSPVVAG 413 (1033)
T KOG4266|consen 353 -------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS------------TGCRSLSGTSVASPVVAG 413 (1033)
T ss_pred -------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc------------ccchhccCCcccchhhhc
Confidence 11358899999998653 2689999999999999776554 677889999999999999
Q ss_pred HHHHHHh----hCCCCCHHHHHHHHHhhcccCCCCCCCccCCCCCCCCCCCcccccccccccCCCceeee
Q 007375 391 VVAAIKH----QNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYE 456 (606)
Q Consensus 391 ~aALl~~----~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~in~~~A~~~~lv~~ 456 (606)
+++||.+ +.--+.|+.+|++|+.+|.++... .-++||+|++|+.++.+--+-|.
T Consensus 414 av~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syqiL~SYk 471 (1033)
T KOG4266|consen 414 AVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQILKSYK 471 (1033)
T ss_pred eeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHHHHHhcC
Confidence 9999976 233468999999999999999865 45799999999999887333343
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-34 Score=303.96 Aligned_cols=240 Identities=26% Similarity=0.342 Sum_probs=187.1
Q ss_pred CCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEeeCCC-CC-CCHHHHHHHHHHHHHCCCcEEEecccCC
Q 007375 42 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YG-CTGSNILAAFDDAIADGVDVLSLSLGGS 119 (606)
Q Consensus 42 ~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~-~~-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 119 (606)
..-|||||||||+|+..+ .....|+||+|+|+++++.+.. +. -+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe--------~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPE--------TPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCC--------CccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 456999999999999743 2245799999999999998765 22 3445689999999999999999999987
Q ss_pred CCCCCCCCCCHHHHHHHHhHhcCcEEEEecCCCCCCCCccccC---CCceEEeeccccCCceeeEEEECCceEEEeeeec
Q 007375 120 AGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNF---APWIFTVAASTIDRDFESDIVLGGNKVIKGESIN 196 (606)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN~G~~~~~~~~~---ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~ 196 (606)
.. .+.....++.+-+.+-++|+++|+||||+||...+++.+ ...+|.|||........+
T Consensus 381 a~--~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a---------------- 442 (1304)
T KOG1114|consen 381 AH--LPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA---------------- 442 (1304)
T ss_pred CC--CCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh----------------
Confidence 64 344556666666555689999999999999998888764 357899998532111000
Q ss_pred cCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCC
Q 007375 197 FSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR 276 (606)
Q Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 276 (606)
.|.+.
T Consensus 443 --------~y~~~------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 443 --------EYSVR------------------------------------------------------------------- 447 (1304)
T ss_pred --------hhhhh-------------------------------------------------------------------
Confidence 00000
Q ss_pred cccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEe
Q 007375 277 AVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILA 356 (606)
Q Consensus 277 ~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~s 356 (606)
.+....+..+|||||+. ||-+--.|+|||+.|.+
T Consensus 448 --------------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAs 481 (1304)
T KOG1114|consen 448 --------------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIAS 481 (1304)
T ss_pred --------------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccC
Confidence 01124678999999999 99999999999999966
Q ss_pred eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhhcccCCCCCCCccCCCCCC
Q 007375 357 AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAA 432 (606)
Q Consensus 357 a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~ 432 (606)
.-.- ....-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++..
T Consensus 482 VP~~----------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----------- 540 (1304)
T KOG1114|consen 482 VPQY----------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----------- 540 (1304)
T ss_pred Cchh----------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-----------
Confidence 4211 115567899999999999999999965 578899999999999999999765
Q ss_pred CCCCCcccccccccccCC
Q 007375 433 ATPYDFGAGEVSTTASLQ 450 (606)
Q Consensus 433 ~~~~~~G~G~in~~~A~~ 450 (606)
.+|.||.|+|++.+|.+
T Consensus 541 -d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 -DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred -chhccCcceeehhHHHH
Confidence 77999999999999987
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-34 Score=282.95 Aligned_cols=215 Identities=20% Similarity=0.172 Sum_probs=151.5
Q ss_pred EEecCCCC-C-----CcccccccccCCCCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCeEEEEEeeCCC
Q 007375 16 AMPETTTY-P-----SAAIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 89 (606)
Q Consensus 16 aViDtGi~-~-----h~d~~~~~~~~~~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~ 89 (606)
+++|.+.+ . |++|.++.+... ...|..||||||||||||.. |++|+++|+..++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~- 67 (247)
T cd07488 5 FLWDKNDSKNAPNTLAAVFIRNNPRFG-RNNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK- 67 (247)
T ss_pred cccccccccCccceeeeeecccccccc-CCCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC-
Confidence 35677763 3 344444444343 56789999999999999873 5579999987665322
Q ss_pred CCCCHHHHHHHHHHH--HHCCCcEEEecccCCCCCCCC-----CCCCHHHHHHHHhHhc-CcEEEEecCCCCCCCC----
Q 007375 90 YGCTGSNILAAFDDA--IADGVDVLSLSLGGSAGIVRP-----LTDDPIALGAFHAVEH-GITVVCSAGNDGPSSG---- 157 (606)
Q Consensus 90 ~~~~~~~i~~ai~~A--~~~gvdVIn~S~G~~~~~~~~-----~~~~~~~~~~~~a~~~-Gv~vV~aAGN~G~~~~---- 157 (606)
....+.++++|+ .+.+++|||||||.... .. ...+.+..+++.+.++ |+++|+||||+|....
T Consensus 68 ---~~~~~~~~i~~~~~~~~gv~VINmS~G~~~~--~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~ 142 (247)
T cd07488 68 ---SNNGQWQECLEAQQNGNNVKIINHSYGEGLK--RDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGG 142 (247)
T ss_pred ---CCCccHHHHHHHHHhcCCceEEEeCCccCCC--CCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCC
Confidence 223456777777 56799999999998753 11 1223566667776655 9999999999997431
Q ss_pred -ccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCc
Q 007375 158 -SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGAL 236 (606)
Q Consensus 158 -~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~ 236 (606)
..+..++++|+|||+.....
T Consensus 143 i~~pa~~~nvItVGA~d~~g~----------------------------------------------------------- 163 (247)
T cd07488 143 ISIPTLAYNSIVVGSTDRNGD----------------------------------------------------------- 163 (247)
T ss_pred cCCccccCCeEEEEEecCCCC-----------------------------------------------------------
Confidence 22334678899998642210
Q ss_pred ccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCe
Q 007375 237 VKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTV 316 (606)
Q Consensus 237 ~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 316 (606)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccCCCccccccCC--CCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHH
Q 007375 317 SVTKYKPAPAIAYFSAR--GPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAA 394 (606)
Q Consensus 317 t~~~~~~~~~~a~fSS~--Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 394 (606)
....+.||++ +|+. ++..||||+|||++|++ +. +.|..++|||||||||||++||
T Consensus 164 -------~~~~s~~sn~~~~~~~--~~~~~~di~APG~~i~s--~~------------~~~~~~sGTSmAaP~VaG~aAl 220 (247)
T cd07488 164 -------RFFASDVSNAGSEINS--YGRRKVLIVAPGSNYNL--PD------------GKDDFVSGTSFSAPLVTGIIAL 220 (247)
T ss_pred -------cceecccccccCCCCC--CCCceeEEEEeeeeEEC--CC------------CceeeecccchHHHHHHHHHHH
Confidence 0012344543 4544 67889999999999998 33 6788999999999999999999
Q ss_pred HHhhCCCCC------HHHHHHHHHhh
Q 007375 395 IKHQNPTFS------PSEIKSAVMTT 414 (606)
Q Consensus 395 l~~~~p~ls------~~~ik~~L~~T 414 (606)
|++++|++. -.++|.+|+.+
T Consensus 221 ll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 221 LLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred HHHHChhhhhCcchhHHHHHHHHhcc
Confidence 999987765 44667777665
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.4e-30 Score=258.19 Aligned_cols=222 Identities=32% Similarity=0.476 Sum_probs=173.4
Q ss_pred cEEEEecCCCC-CCccc---ccccccCC---------CCCCCCCCChhhHHHhhccCCcCCCcccccCCcceeeecCCCe
Q 007375 13 KELAMPETTTY-PSAAI---EDDVVANG---------QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSR 79 (606)
Q Consensus 13 v~VaViDtGi~-~h~d~---~~~~~~~~---------~~~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~ 79 (606)
|+|+|||+|++ .|++| ........ ....|..+||||||++|++.... ....|+||+|+
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~~---------~~~~g~a~~a~ 71 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAK 71 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccCcccccccccCcCCCCCCCCCCCcHHHHHHHHhcCCCC---------CCCEEeCCCCE
Confidence 68999999997 88875 21111100 13456789999999999997532 22279999999
Q ss_pred EEEEEeeCCCCCCCHHHHHHHHHHHH-HCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhc-CcEEEEecCCCCCCCC
Q 007375 80 IAVYRVCSPEYGCTGSNILAAFDDAI-ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH-GITVVCSAGNDGPSSG 157 (606)
Q Consensus 80 L~~~kv~~~~~~~~~~~i~~ai~~A~-~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~-Gv~vV~aAGN~G~~~~ 157 (606)
|+.+|+...........+++++++++ +.+++|||||||.... . ....+...+.++.++ |+++|+|+||.+....
T Consensus 72 i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~---~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~ 147 (241)
T cd00306 72 LIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGS---P-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGG 147 (241)
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCC---C-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCC
Confidence 99999998765567888999999999 8999999999998762 2 445677777888877 9999999999997765
Q ss_pred ---ccccCCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCccc
Q 007375 158 ---SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAG 234 (606)
Q Consensus 158 ---~~~~~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~ 234 (606)
..+...+++|+||++..+.
T Consensus 148 ~~~~~p~~~~~vi~Vga~~~~~---------------------------------------------------------- 169 (241)
T cd00306 148 TNIGYPAASPNVIAVGAVDRDG---------------------------------------------------------- 169 (241)
T ss_pred CCccCCccCCceEEEEecCcCC----------------------------------------------------------
Confidence 3566779999999864321
Q ss_pred CcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHHHHhcCCCceEEEee
Q 007375 235 ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILP 314 (606)
Q Consensus 235 ~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~ 314 (606)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeeecccCCCcc-ccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHH
Q 007375 315 TVSVTKYKPAPAI-AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVA 393 (606)
Q Consensus 315 ~~t~~~~~~~~~~-a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 393 (606)
.. ..++++| .|||+.|||..+...... ....+..++|||||||+|||++|
T Consensus 170 -----------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~----------~~~~~~~~~GTS~Aap~vaG~~A 220 (241)
T cd00306 170 -----------TPASPSSNGG--------AGVDIAAPGGDILSSPTT----------GGGGYATLSGTSMAAPIVAGVAA 220 (241)
T ss_pred -----------CccCCcCCCC--------CCceEEeCcCCccCcccC----------CCCCeEeeccHHHHHHHHHHHHH
Confidence 11 1233333 467999999999875111 12789999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhh
Q 007375 394 AIKHQNPTFSPSEIKSAVMTT 414 (606)
Q Consensus 394 Ll~~~~p~ls~~~ik~~L~~T 414 (606)
|++|++|++++.++|++|++|
T Consensus 221 l~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 221 LLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHCCCCCHHHHHHHHhhC
Confidence 999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.8e-23 Score=225.36 Aligned_cols=262 Identities=29% Similarity=0.402 Sum_probs=193.2
Q ss_pred ccccc--c-CCCCcEEEEecCCCC-CCccccccc------ccCCCC--CCCCCCChhhHHHhhccCCcCCCcccccCCcc
Q 007375 3 KIWVQ--F-QHGGKELAMPETTTY-PSAAIEDDV------VANGQS--PRDMVGHGTHVASTAAGQAVQGASYYGLAAGT 70 (606)
Q Consensus 3 ~~w~~--~-~~~Gv~VaViDtGi~-~h~d~~~~~------~~~~~~--~~D~~GHGThVAGiiag~~~~~~~~~G~~~~~ 70 (606)
.+|.. . .++|++++++|+|+. .|++|.... ...... ..|..+|||||+|++++.... +...
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~ 203 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAG 203 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccccccccccCCCCCCCCCCCCCcceeeeeeeeeccc-------CCCc
Confidence 46664 4 349999999999997 899998754 333333 478999999999999984211 2334
Q ss_pred eeeecCCCeEEEEEeeCCC-CCCCHHHHHHHHHHHHHCC--CcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcC-cEEE
Q 007375 71 AIGGSPGSRIAVYRVCSPE-YGCTGSNILAAFDDAIADG--VDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHG-ITVV 146 (606)
Q Consensus 71 ~~GvAP~A~L~~~kv~~~~-~~~~~~~i~~ai~~A~~~g--vdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~G-v~vV 146 (606)
..|++|+++++.+|++... +.....+++++|+++++.+ +++||||+|... .......+..++..+...| +++|
T Consensus 204 ~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~---~~~~~~~~~~a~~~~~~~g~v~~v 280 (508)
T COG1404 204 VAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSL---SDSASPALGDALAAAANAGGVVIV 280 (508)
T ss_pred cccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCc---cccccHHHHHHHHHHHHcCCEEEE
Confidence 6899999999999999876 6778888899999999999 999999999861 2334456667777777777 9999
Q ss_pred EecCCCCCCCCc----cccCC--CceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcC
Q 007375 147 CSAGNDGPSSGS----VVNFA--PWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDAN 220 (606)
Q Consensus 147 ~aAGN~G~~~~~----~~~~a--p~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (606)
+++||.+..... .+... +.+++|++..
T Consensus 281 ~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~----------------------------------------------- 313 (508)
T COG1404 281 AAAGNDGSNASGGDLAYPASYPAPNVIAVGALD----------------------------------------------- 313 (508)
T ss_pred EecccCCCCCccccccCCcccCCCceEEEecCC-----------------------------------------------
Confidence 999999865421 11111 2334444321
Q ss_pred ccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecHHHHHHHHH
Q 007375 221 ENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILA 300 (606)
Q Consensus 221 ~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~ 300 (606)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEe-----eecCCCCCCCCCCCCCCcc
Q 007375 301 YINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILA-----AWMGNDTGEAPEGKEPPLF 375 (606)
Q Consensus 301 ~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~y 375 (606)
..+.+..||++|+.. ..+++|||.+|.+ .++... ..|
T Consensus 314 ----------------------~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~----------~~~ 355 (508)
T COG1404 314 ----------------------LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG----------ADY 355 (508)
T ss_pred ----------------------CCCccccccccCCCC------CcceeCCCccccccccceeeeCCc----------cce
Confidence 124677899999852 2399999999988 555410 249
Q ss_pred eeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhhcccCCCCCCCccCCCCCCCCCCCcccccccccccCC
Q 007375 376 NVISGTSMSCPHISGVVAAIKHQNP-TFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 450 (606)
Q Consensus 376 ~~~sGTSmAaP~VAG~aALl~~~~p-~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~in~~~A~~ 450 (606)
..++||||++|||+|.+||+++.+| .+++.+++..+..++...... .....++.|..+......
T Consensus 356 ~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 356 VTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLS-----------GVDNLVGGGLANLDAAAT 420 (508)
T ss_pred EeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCC-----------ccccccccCccccccccc
Confidence 9999999999999999999999999 899999999988888740110 144566777666665554
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.77 E-value=2.5e-18 Score=180.76 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=81.9
Q ss_pred CCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHC---CCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCc
Q 007375 67 AAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD---GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGI 143 (606)
Q Consensus 67 ~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~---gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv 143 (606)
+.....||||+|+|+.|++.+.. ...++.++.+++.+ +++|||+|||...........+.+..++.++..+||
T Consensus 79 Dv~~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi 154 (361)
T cd04056 79 DVEYAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGI 154 (361)
T ss_pred hHHHHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCe
Confidence 45567999999999999997642 45677888888887 999999999987621011123566777788889999
Q ss_pred EEEEecCCCCCCCC-----------ccccCCCceEEeeccccCC
Q 007375 144 TVVCSAGNDGPSSG-----------SVVNFAPWIFTVAASTIDR 176 (606)
Q Consensus 144 ~vV~aAGN~G~~~~-----------~~~~~ap~visVga~~~~~ 176 (606)
.||+|+||+|.... ..+...|||++||+++...
T Consensus 155 tvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 155 TVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999999997653 2345679999999987654
No 43
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9e-18 Score=165.09 Aligned_cols=293 Identities=19% Similarity=0.272 Sum_probs=179.9
Q ss_pred CcccccccCC-CCcEEEEecCCC-CCCcccccccc--------cCCCCCC----C--CCCChhhHHHhhccCCcCCCccc
Q 007375 1 MTKIWVQFQH-GGKELAMPETTT-YPSAAIEDDVV--------ANGQSPR----D--MVGHGTHVASTAAGQAVQGASYY 64 (606)
Q Consensus 1 ~~~~w~~~~~-~Gv~VaViDtGi-~~h~d~~~~~~--------~~~~~~~----D--~~GHGThVAGiiag~~~~~~~~~ 64 (606)
+.++|.++++ ++|+++|+|.|| |.|||+..+.- .+++.|+ | .+.|||-|||-+++...+ +.+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~nynaeasydfssndpfpyprytddwfnshgtrcagev~aardn--gic 227 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAGEVVAARDN--GIC 227 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcccCceeecccccCCCCCCCcccchhhhccCccccceeeeeccC--Cce
Confidence 3578999987 999999999999 69999986632 2333222 3 478999999977766533 333
Q ss_pred ccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHH-CCCcEEEecccCCCCCCCCCCCCH---HHHHHHHhHh
Q 007375 65 GLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGGSAGIVRPLTDDP---IALGAFHAVE 140 (606)
Q Consensus 65 G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~~~~~~~~~~---~~~~~~~a~~ 140 (606)
| .|||.+.++..+|+++.. ...|+++|-..-.+ ..++|.+-|||..... ...+.+ ..+++.+-+.
T Consensus 228 g------vgvaydskvagirmldqp---ymtdlieansmghep~kihiysaswgptddg--ktvdgprnatmraiv~gvn 296 (629)
T KOG3526|consen 228 G------VGVAYDSKVAGIRMLDQP---YMTDLIEANSMGHEPSKIHIYSASWGPTDDG--KTVDGPRNATMRAIVRGVN 296 (629)
T ss_pred e------eeeeeccccceeeecCCc---hhhhhhhhcccCCCCceEEEEecccCcCCCC--cccCCchhHHHHHHHHhhh
Confidence 4 599999999999999753 66677666433222 3578999999987531 222222 2223333232
Q ss_pred -----cCcEEEEecCCCCCCC-Ccccc--CCCceEEeeccccCCceeeEEEECCceEEEeeeeccCCCCCCCccceEEcc
Q 007375 141 -----HGITVVCSAGNDGPSS-GSVVN--FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAK 212 (606)
Q Consensus 141 -----~Gv~vV~aAGN~G~~~-~~~~~--~ap~visVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~ 212 (606)
.|-+.|.|+|..|... ..... .+-|.|++-+.-.+. ++ ..|.
T Consensus 297 egrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg-----------~n------------------ahyd- 346 (629)
T KOG3526|consen 297 EGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDG-----------EN------------------AHYD- 346 (629)
T ss_pred cccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCC-----------cc------------------cccc-
Confidence 4668999999887432 11111 233555543321110 00 0000
Q ss_pred CCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcccccCcccceEEecH
Q 007375 213 SAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISS 292 (606)
Q Consensus 213 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ip~~~i~~ 292 (606)
+.|.
T Consensus 347 ------------escs---------------------------------------------------------------- 350 (629)
T KOG3526|consen 347 ------------ESCS---------------------------------------------------------------- 350 (629)
T ss_pred ------------chhh----------------------------------------------------------------
Confidence 0011
Q ss_pred HHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCccCCceeeCCCceEeeecCCCCCCCCCCCCC
Q 007375 293 KEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEP 372 (606)
Q Consensus 293 ~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 372 (606)
....+.||+-|-++.. |+ ..+ +-..
T Consensus 351 -------------------------------stlastfsng~rnpet-----------gv--att-----------dlyg 375 (629)
T KOG3526|consen 351 -------------------------------STLASTFSNGGRNPET-----------GV--ATT-----------DLYG 375 (629)
T ss_pred -------------------------------HHHHHHhhcCCcCCCc-----------ce--eee-----------cccc
Confidence 0123456665544310 11 111 1112
Q ss_pred CcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccCCCCCCC--ccC--CCCCCCCCCCccccccccccc
Q 007375 373 PLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAP--ITT--NSGAAATPYDFGAGEVSTTAS 448 (606)
Q Consensus 373 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~L~~TA~~~~~~~~~--~~~--~~~~~~~~~~~G~G~in~~~A 448 (606)
......||||.|+|-+||+-||.++++|.|+..+++.+-.-|.++..-.... +.. ......-+.-||+|.+|+.+.
T Consensus 376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam 455 (629)
T KOG3526|consen 376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM 455 (629)
T ss_pred ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence 5566789999999999999999999999999999999887777665432111 111 111233566799999999887
Q ss_pred CCCceeeeCCcccccceecccC
Q 007375 449 LQPGLVYETTTLDYLNFLCYYG 470 (606)
Q Consensus 449 ~~~~lv~~~~~~dy~~~~c~~~ 470 (606)
+.-...+...+. +|-|.-|
T Consensus 456 v~lak~wktvpp---ryhc~ag 474 (629)
T KOG3526|consen 456 VMLAKAWKTVPP---RYHCTAG 474 (629)
T ss_pred HHHHHHhccCCC---ceeeccc
Confidence 765555555554 3567666
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.22 E-value=9.6e-11 Score=106.61 Aligned_cols=116 Identities=26% Similarity=0.362 Sum_probs=90.7
Q ss_pred CCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCccc--
Q 007375 202 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA-- 279 (606)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-- 279 (606)
.....++++.+. |....+...+++|||+||+|+. |.+.+|..+++.+||.|+|++++......
T Consensus 24 ~~~~~~lv~~g~-------------g~~~d~~~~dv~GkIvL~~rg~--c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~ 88 (143)
T cd02133 24 LGKTYELVDAGL-------------GTPEDFEGKDVKGKIALIQRGE--ITFVEKIANAKAAGAVGVIIYNNVDGLIPGT 88 (143)
T ss_pred CCcEEEEEEccC-------------CchhccCCCCccceEEEEECCC--CCHHHHHHHHHHCCCeEEEEeecCCCccccc
Confidence 356778888664 5555556678999999999965 68999999999999999999998764221
Q ss_pred -ccCcccceEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCC
Q 007375 280 -SSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSP 337 (606)
Q Consensus 280 -~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~ 337 (606)
.....+|++.++.++|+.|++++++ .+++.+..+.. ..+++.++.||||||.-
T Consensus 89 ~~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 89 LGEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 1124689999999999999999988 55566555544 45778899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.20 E-value=2.6e-10 Score=101.50 Aligned_cols=121 Identities=39% Similarity=0.630 Sum_probs=95.7
Q ss_pred EEECCceEEEeeeeccCCCCCCCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCc-hhHHHHHHH
Q 007375 182 IVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMG-SVVDKKDGV 260 (606)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~-~~~~~~~~~ 260 (606)
+.|+|++.+.|++++.... ..+++++.... ........|.+..+...+++||||||+++. + .+.+|..++
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~--~~~~~~k~~~~ 72 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGG--NTSRVAKGDAV 72 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCC--CccHHHHHHHH
Confidence 5789999999999996443 45677763321 122345789988888899999999999975 5 788999999
Q ss_pred HhcCceEEEEEeCCCCccc--ccCcccceEEecHHHHHHHHHHHhcCCCceEE
Q 007375 261 KSLGGVGVIVIDDQSRAVA--SSYGTFPLTVISSKEAAEILAYINSKRNPVAT 311 (606)
Q Consensus 261 ~~~Ga~g~i~~~~~~~~~~--~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~ 311 (606)
+.+||.|+|++++...... .....+|++.|+.++++.|+.|+++...++++
T Consensus 73 ~~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 73 KAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HHcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999999998764322 22367999999999999999999998776654
No 46
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.60 E-value=2.7e-07 Score=81.55 Aligned_cols=86 Identities=24% Similarity=0.335 Sum_probs=70.6
Q ss_pred cCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcc-----cc--cCcccceEEecHHHHH
Q 007375 224 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV-----AS--SYGTFPLTVISSKEAA 296 (606)
Q Consensus 224 ~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~-----~~--~~~~ip~~~i~~~~g~ 296 (606)
...|.+..+...+++|||+||+|+. |.+.+|..+++++||.++|++|+..... .. ....+|.+.|+.++|+
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~--c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~ 106 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGG--CPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGA 106 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHH
Confidence 3679988888789999999999965 6799999999999999999999876321 11 3346999999999999
Q ss_pred HHHHHHhcCCCceEE
Q 007375 297 EILAYINSKRNPVAT 311 (606)
Q Consensus 297 ~l~~~~~~~~~~~~~ 311 (606)
.|++++.++.+.+++
T Consensus 107 ~l~~~l~~g~~v~~~ 121 (122)
T cd04816 107 ALRRRLGAGETLELD 121 (122)
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999887655443
No 47
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.55 E-value=5.8e-07 Score=80.68 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=71.1
Q ss_pred cCCCCCCCc--ccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCC-C-ccc----ccCcccceEEecHHHH
Q 007375 224 ARNCDLDSL--AGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS-R-AVA----SSYGTFPLTVISSKEA 295 (606)
Q Consensus 224 ~~~c~~~~~--~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~-~-~~~----~~~~~ip~~~i~~~~g 295 (606)
...|.+... +..++.|+|+|++||. |+|.+|..+++.+||.++|++|+.. . ... .....+|.++|+..+|
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~--C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGN--CTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 467998776 5678999999999965 7899999999999999999999986 2 111 2234789999999999
Q ss_pred HHHHHHHhcCCCceEE
Q 007375 296 AEILAYINSKRNPVAT 311 (606)
Q Consensus 296 ~~l~~~~~~~~~~~~~ 311 (606)
+.|+.++.++.+.+++
T Consensus 122 ~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 122 MEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999988766554
No 48
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.54 E-value=7.2e-07 Score=77.45 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=72.2
Q ss_pred CCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCc-c---
Q 007375 203 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA-V--- 278 (606)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~--- 278 (606)
...+|++.... ...|.+..+...+++|+|+|++||. |+|.+|..+++.+||.++|++|+.... .
T Consensus 19 ~~~~~~~~~~~----------~~gC~~~~~~~~~l~gkIaLV~RG~--CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~ 86 (120)
T cd02129 19 ATLLPLRNLTS----------SVLCSASDVPPGGLKGKAVVVMRGN--CTFYEKARLAQSLGAEGLLIVSRERLVPPSGN 86 (120)
T ss_pred CcceeeecCCC----------cCCCCccccCccccCCeEEEEECCC--cCHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
Confidence 34566665443 4679988888889999999999965 789999999999999999999998631 1
Q ss_pred c--ccCcccceEEecHHHHHHHHHHHhc
Q 007375 279 A--SSYGTFPLTVISSKEAAEILAYINS 304 (606)
Q Consensus 279 ~--~~~~~ip~~~i~~~~g~~l~~~~~~ 304 (606)
. .....||+++|+.++|+.|++.+.+
T Consensus 87 ~~~~~~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 87 RSEYEKIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred CCCCcCCcccEEEEeHHHHHHHHHHhcc
Confidence 1 1334689999999999999987764
No 49
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.53 E-value=1.3e-06 Score=75.93 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=60.3
Q ss_pred EEeccCCCceEEEEEEEEeccCCCCeEEEEEEeCC--------CC----------c-EEEEecceeeecCCCcEEEEEEE
Q 007375 507 AVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAP--------QG----------L-NVKVIPEELQFTKSGQKLSYQVT 567 (606)
Q Consensus 507 ~~~~~~~~~~~t~~rtvtn~~~~~~~ty~~~v~~~--------~g----------~-~v~v~p~~~~~~~~~~~~~~~v~ 567 (606)
++++... ..+++++|+|.| +.+.+|+++.... .| . .+...|..+++ ++|++++|+|+
T Consensus 2 ~L~d~~~--~~~~~itl~N~~-~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vt 77 (112)
T PF06280_consen 2 SLKDTGN--KFSFTITLHNYG-DKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVT 77 (112)
T ss_dssp EEEEE-S--EEEEEEEEEE-S-SS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEE
T ss_pred CccccCC--ceEEEEEEEECC-CCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEE
Confidence 4555543 688999999999 9999999987611 11 1 57778889998 67999999999
Q ss_pred EEecc---CCCCCcEEEEEEEECC-c-eeEEEEEE
Q 007375 568 FTSAL---SPLKEDVFGSITWSNG-K-YKVRSLFV 597 (606)
Q Consensus 568 ~~~~~---~~~~~~~~G~i~~~~g-~-~~v~~P~~ 597 (606)
|+..+ .....+++|+|.+++. . ..+++|++
T Consensus 78 i~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 78 ITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 99963 2447889999999974 4 48999986
No 50
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.53 E-value=1.7e-07 Score=79.69 Aligned_cols=77 Identities=30% Similarity=0.446 Sum_probs=62.3
Q ss_pred cCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCC------CcccccCcccceEEecHHHHHH
Q 007375 224 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS------RAVASSYGTFPLTVISSKEAAE 297 (606)
Q Consensus 224 ~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~------~~~~~~~~~ip~~~i~~~~g~~ 297 (606)
...|.+......+++||||||+|+. |++.+|..+++.+||.|+|+++... .........||+++|+.++++.
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~--~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~ 96 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGS--CSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEA 96 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTS--SCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHH
T ss_pred cccccccccCCccccceEEEEecCC--CCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhh
Confidence 3457777888999999999999965 6899999999999999999999211 2234556789999999999999
Q ss_pred HHHHH
Q 007375 298 ILAYI 302 (606)
Q Consensus 298 l~~~~ 302 (606)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 99985
No 51
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.50 E-value=1e-06 Score=76.92 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=69.8
Q ss_pred cCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCc---cc-------ccCcccceEEecHH
Q 007375 224 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA---VA-------SSYGTFPLTVISSK 293 (606)
Q Consensus 224 ~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~---~~-------~~~~~ip~~~i~~~ 293 (606)
...|.+.. ...+++|+|+|++||. |.|.+|..+++.+||.++|++|+.... .. .....||.++|+.+
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~--C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGG--CSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHH
Confidence 45798744 3567999999999965 789999999999999999999987531 11 12347999999999
Q ss_pred HHHHHHHHHhcCCCceEEE
Q 007375 294 EAAEILAYINSKRNPVATI 312 (606)
Q Consensus 294 ~g~~l~~~~~~~~~~~~~i 312 (606)
+|+.|+..+..+..+++.+
T Consensus 98 dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 98 NGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHcCCceEEee
Confidence 9999999999888776654
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.50 E-value=8.5e-07 Score=77.88 Aligned_cols=86 Identities=22% Similarity=0.252 Sum_probs=69.2
Q ss_pred ccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCc-cc-----ccCcccceEEecHHHHH
Q 007375 223 AARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA-VA-----SSYGTFPLTVISSKEAA 296 (606)
Q Consensus 223 ~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~-----~~~~~ip~~~i~~~~g~ 296 (606)
....|.+.... .+++|||+||+|+. |.+.+|..+++.+||.|+|++++.... .. .....+|++.++.++++
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~--c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGT--CNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCC--CCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 34679888874 45999999999865 788999999999999999999987742 11 12347999999999999
Q ss_pred HHHHHHhcCCCceEE
Q 007375 297 EILAYINSKRNPVAT 311 (606)
Q Consensus 297 ~l~~~~~~~~~~~~~ 311 (606)
.|++|++.....+++
T Consensus 103 ~l~~~l~~g~~v~v~ 117 (118)
T cd04818 103 ALKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHHhcCCcEEEe
Confidence 999999987655443
No 53
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.4e-06 Score=98.03 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=85.1
Q ss_pred cccccCC-CCcEEEEec-CCC-CCCcccc---cccccCCCCCC------CCCCChhhHHHhhccCCcCCCcccccCCcce
Q 007375 4 IWVQFQH-GGKELAMPE-TTT-YPSAAIE---DDVVANGQSPR------DMVGHGTHVASTAAGQAVQGASYYGLAAGTA 71 (606)
Q Consensus 4 ~w~~~~~-~Gv~VaViD-tGi-~~h~d~~---~~~~~~~~~~~------D~~GHGThVAGiiag~~~~~~~~~G~~~~~~ 71 (606)
+++.+.. +|++|||+| -|- +...|+. +....+..... -..+|+||=+. ..-++....
T Consensus 220 l~~~g~tGkG~tIaIid~yG~p~~~~dl~~Fd~~~Gip~~~~~~V~~ig~g~~~~~~g~~-----------E~sLDVE~s 288 (1174)
T COG4934 220 LYESGATGKGETIAIIDAYGDPYNNQDLYSFDQQYGIPNPILSRVTYIGPGIGSGTGGAE-----------ETSLDVEWS 288 (1174)
T ss_pred cccCCCCCCCcEEEEEeccCCcccHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCCccc-----------cceeehhhh
Confidence 3444444 999999999 554 2222221 11111111110 24678777443 112245556
Q ss_pred eeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCC-cEEEecccCCCCCCCCC--CCCHHHHHHHHhHhcCcEEEEe
Q 007375 72 IGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGV-DVLSLSLGGSAGIVRPL--TDDPIALGAFHAVEHGITVVCS 148 (606)
Q Consensus 72 ~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gv-dVIn~S~G~~~~~~~~~--~~~~~~~~~~~a~~~Gv~vV~a 148 (606)
+-+||+|+|..|-.- ......+..|+.+-...=+ -+|-+||+....-...+ ..+.+......|..+|+.+++|
T Consensus 289 ~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 289 HAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 789999999998762 2223333333333222111 33335666532100122 3344556666788999999999
Q ss_pred cCCCCCCCCc--------cccCCCceEEeec
Q 007375 149 AGNDGPSSGS--------VVNFAPWIFTVAA 171 (606)
Q Consensus 149 AGN~G~~~~~--------~~~~ap~visVga 171 (606)
+|.+|....+ .+..+||+++||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 9999865532 3446799999997
No 54
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.46 E-value=9.5e-07 Score=78.37 Aligned_cols=85 Identities=24% Similarity=0.343 Sum_probs=69.1
Q ss_pred cCCCCCCC--cccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcc---cc-----cCcccceEEecHH
Q 007375 224 ARNCDLDS--LAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV---AS-----SYGTFPLTVISSK 293 (606)
Q Consensus 224 ~~~c~~~~--~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~-----~~~~ip~~~i~~~ 293 (606)
...|.+.. +...+++|||+||+|+. |.+.+|..+++.+||.|+|++++..... .. ....+|++.++.+
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~--~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGG--CSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCC--cCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 45688777 67788999999999865 6899999999999999999999876321 11 3457999999999
Q ss_pred HHHHHHHHHhcCCCceE
Q 007375 294 EAAEILAYINSKRNPVA 310 (606)
Q Consensus 294 ~g~~l~~~~~~~~~~~~ 310 (606)
+++.|+.|+.+..+.++
T Consensus 108 ~g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 108 DGEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHHhcCCceEE
Confidence 99999999988655443
No 55
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.40 E-value=1.9e-06 Score=76.42 Aligned_cols=84 Identities=31% Similarity=0.430 Sum_probs=67.2
Q ss_pred cCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCc------cc---c-----cCcccceEE
Q 007375 224 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA------VA---S-----SYGTFPLTV 289 (606)
Q Consensus 224 ~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~------~~---~-----~~~~ip~~~ 289 (606)
...|.+... +.+++|||+|++||. |+|.+|..+++.+||.++|++|+.... .. . ....||+++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~--C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~ 103 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGD--CMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVF 103 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCC--CcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEE
Confidence 357987654 567899999999965 789999999999999999999876532 11 1 234789999
Q ss_pred ecHHHHHHHHHHHhcCCCceE
Q 007375 290 ISSKEAAEILAYINSKRNPVA 310 (606)
Q Consensus 290 i~~~~g~~l~~~~~~~~~~~~ 310 (606)
|+..+|+.|+.++..+...++
T Consensus 104 I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 104 LFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEHHHHHHHHHHHHhCCceEE
Confidence 999999999999988765544
No 56
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.38 E-value=2.2e-06 Score=75.67 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=67.6
Q ss_pred CCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCC-Ccc---c--ccCcccceEEecHHHHHHH
Q 007375 225 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS-RAV---A--SSYGTFPLTVISSKEAAEI 298 (606)
Q Consensus 225 ~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~-~~~---~--~~~~~ip~~~i~~~~g~~l 298 (606)
..|.+..+ +.+++|||+|++|+. |.+.+|..+++.+||.++|++|+.. ... . .....+|.+.|+.++|+.|
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~--c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L 108 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGE--CPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKAL 108 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHH
Confidence 45886554 357999999999965 6799999999999999999999883 211 1 1245799999999999999
Q ss_pred HHHHhcCCCceEE
Q 007375 299 LAYINSKRNPVAT 311 (606)
Q Consensus 299 ~~~~~~~~~~~~~ 311 (606)
+..++++.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd02130 109 VAALANGGEVSAN 121 (122)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988776554
No 57
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.34 E-value=3.3e-06 Score=74.93 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=66.7
Q ss_pred ccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcc---cccCcccceEEecHHHHHHHH
Q 007375 223 AARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV---ASSYGTFPLTVISSKEAAEIL 299 (606)
Q Consensus 223 ~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~~~~~ip~~~i~~~~g~~l~ 299 (606)
....|.+...+..+++|+|+|++|+. |.+.+|..+++++||.++|++|+..... ..+...++.+.+ .++|+.|+
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~--c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~ 116 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGT--CTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWI 116 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCC--CCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHH
Confidence 34679987666668999999999975 7899999999999999999999876322 122334566666 99999999
Q ss_pred HHHhcCCCceE
Q 007375 300 AYINSKRNPVA 310 (606)
Q Consensus 300 ~~~~~~~~~~~ 310 (606)
+.++.+...++
T Consensus 117 ~~l~~G~~vtv 127 (129)
T cd02124 117 DALAAGSNVTV 127 (129)
T ss_pred HHHhcCCeEEE
Confidence 99987765444
No 58
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.34 E-value=3.2e-06 Score=74.79 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=67.9
Q ss_pred cCCCCCCCcc--cC----cccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCccc-------------ccCcc
Q 007375 224 ARNCDLDSLA--GA----LVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA-------------SSYGT 284 (606)
Q Consensus 224 ~~~c~~~~~~--~~----~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-------------~~~~~ 284 (606)
...|++.... +. ...++|+|++||. |.|.+|..+++.+||.++|++|+...... .....
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~--C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGG--CFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCC--cCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCce
Confidence 4578876543 22 3788999999965 88999999999999999999998764321 11236
Q ss_pred cceEEecHHHHHHHHHHHhcCCCceEE
Q 007375 285 FPLTVISSKEAAEILAYINSKRNPVAT 311 (606)
Q Consensus 285 ip~~~i~~~~g~~l~~~~~~~~~~~~~ 311 (606)
||+++|+.++|+.|+..+.++...+++
T Consensus 100 IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 100 IPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 999999999999999999988766554
No 59
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.34 E-value=2.5e-06 Score=76.21 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=59.0
Q ss_pred cccCcccceEEEEecCCCC---chhHHHHHHHHhcCceEEEEEeCC--CCcc---cc---cCcccceEEecHHHHHHHHH
Q 007375 232 LAGALVKGKIVLCDNDDDM---GSVVDKKDGVKSLGGVGVIVIDDQ--SRAV---AS---SYGTFPLTVISSKEAAEILA 300 (606)
Q Consensus 232 ~~~~~~~gkivl~~~~~~~---~~~~~~~~~~~~~Ga~g~i~~~~~--~~~~---~~---~~~~ip~~~i~~~~g~~l~~ 300 (606)
+...+++|||+|++|+.+. ..|.+|.++++.+||+++|+||+. .... .. ...+||+++++.++|+.|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 4456899999999997643 129999999999999999999998 3211 11 14589999999999999999
Q ss_pred HHhcC
Q 007375 301 YINSK 305 (606)
Q Consensus 301 ~~~~~ 305 (606)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 87543
No 60
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.32 E-value=3.5e-06 Score=76.06 Aligned_cols=82 Identities=13% Similarity=0.275 Sum_probs=66.5
Q ss_pred cCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCccc-----c---cCcccceEEecHHHH
Q 007375 224 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA-----S---SYGTFPLTVISSKEA 295 (606)
Q Consensus 224 ~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-----~---~~~~ip~~~i~~~~g 295 (606)
...|.+.. .+++|+|+|++||. |+|.+|..+++.+||.++|++|+...... . ....||++.|+..+|
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~--C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G 122 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGE--CAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAG 122 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCC--CCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHH
Confidence 46798764 47999999999965 78999999999999999999998763211 0 134799999999999
Q ss_pred HHHHHHHhcCCCceE
Q 007375 296 AEILAYINSKRNPVA 310 (606)
Q Consensus 296 ~~l~~~~~~~~~~~~ 310 (606)
+.|+..+.++...++
T Consensus 123 ~~L~~~l~~g~~Vtv 137 (139)
T cd02132 123 DALNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHHHcCCcEEE
Confidence 999999988766544
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.30 E-value=3.8e-06 Score=73.18 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=63.8
Q ss_pred cCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCc-c---c----ccCcccceEEecHHHH
Q 007375 224 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA-V---A----SSYGTFPLTVISSKEA 295 (606)
Q Consensus 224 ~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~---~----~~~~~ip~~~i~~~~g 295 (606)
...|.+. +..+++|||+|++||. |+|.+|..+++.+||.++|++|+.... . . .....+|+++++.+++
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~--CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGG--CGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 4679766 5688999999999965 789999999999999999999987632 1 1 2234799999999999
Q ss_pred HHHHHHHhcC
Q 007375 296 AEILAYINSK 305 (606)
Q Consensus 296 ~~l~~~~~~~ 305 (606)
+.|+.++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999876543
No 62
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.19 E-value=1.8e-05 Score=70.25 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCccc---
Q 007375 203 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA--- 279 (606)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~--- 279 (606)
....++++.+. +....+...+++|||+|++++.+...+.+|..++.++||.|+|++++......
T Consensus 22 ~~~~~lV~~g~-------------G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~ 88 (127)
T cd04819 22 EAKGEPVDAGY-------------GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATG 88 (127)
T ss_pred CeeEEEEEeCC-------------CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccc
Confidence 45677787664 22223345679999999999764337889999999999999999987764321
Q ss_pred ------ccCcccceEEecHHHHHHHHHHHhcCCC
Q 007375 280 ------SSYGTFPLTVISSKEAAEILAYINSKRN 307 (606)
Q Consensus 280 ------~~~~~ip~~~i~~~~g~~l~~~~~~~~~ 307 (606)
.....+|++.|+.+|++.|...++.+..
T Consensus 89 ~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 89 DEGTEDGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred cccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 1235799999999999999999987543
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.18 E-value=1.1e-05 Score=73.89 Aligned_cols=82 Identities=16% Similarity=0.155 Sum_probs=68.0
Q ss_pred cCCCCCCCccc---CcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCccc---c-----cCcccceEEecH
Q 007375 224 ARNCDLDSLAG---ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA---S-----SYGTFPLTVISS 292 (606)
Q Consensus 224 ~~~c~~~~~~~---~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~---~-----~~~~ip~~~i~~ 292 (606)
...|.+....+ .++.|+|+|++||. |+|.+|..+++.+||.++|++|+..+... . ....||+++|+.
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~--CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~ 127 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGN--CSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGK 127 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCC--CCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeH
Confidence 45798776644 78999999999965 78999999999999999999998764321 1 244899999999
Q ss_pred HHHHHHHHHHhcCCC
Q 007375 293 KEAAEILAYINSKRN 307 (606)
Q Consensus 293 ~~g~~l~~~~~~~~~ 307 (606)
++|+.|+.++.....
T Consensus 128 ~dg~~L~~~l~~~~~ 142 (153)
T cd02123 128 STGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999999987655
No 64
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=6.9e-06 Score=87.63 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=93.0
Q ss_pred CcccccccCC-CCcEEEEecCCCC-CCccccccccc--------CC------CCCCCCCCChhhHHHhhccCCcCCCccc
Q 007375 1 MTKIWVQFQH-GGKELAMPETTTY-PSAAIEDDVVA--------NG------QSPRDMVGHGTHVASTAAGQAVQGASYY 64 (606)
Q Consensus 1 ~~~~w~~~~~-~Gv~VaViDtGi~-~h~d~~~~~~~--------~~------~~~~D~~GHGThVAGiiag~~~~~~~~~ 64 (606)
++..|..+.+ .++.+++.|.|+. .|+++....-- .+ .+......|||-||+-.+....+
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~~~~~s~d~~~~~~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~----- 96 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNYDPLGSYDVNRHDNDPEPRCDGTNENKHGTRCAGCVAARANN----- 96 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccccCcceeEeeecCCCCcccccCCCCccccCCCCCcccccccCC-----
Confidence 3578988887 9999999999996 99998765321 11 23334688999999999877522
Q ss_pred ccCCcceeeecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHH-CCCcEEEecccCCCCCCCCCCCC-HHHHHHHHh----
Q 007375 65 GLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGGSAGIVRPLTDD-PIALGAFHA---- 138 (606)
Q Consensus 65 G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~~~~~~~~~-~~~~~~~~a---- 138 (606)
..-..|+++++++..++++... ..+...+...... .-+++-+.|||............ ....+...+
T Consensus 97 ---~~C~vg~~~~~~~~g~~~l~~~----v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g 169 (431)
T KOG3525|consen 97 ---LTCGVGVAYNATIGGIRMLAGC----VSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCG 169 (431)
T ss_pred ---CcCCCCcccCccccceeeeeee----cccceecccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhcccccc
Confidence 2234689999999999988533 1232222222222 35789999999865321111111 122222222
Q ss_pred -HhcCcEEEEecCCCCCCCC
Q 007375 139 -VEHGITVVCSAGNDGPSSG 157 (606)
Q Consensus 139 -~~~Gv~vV~aAGN~G~~~~ 157 (606)
..+|-+.+++.||.|....
T Consensus 170 ~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 170 RHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred ccCCCCeeEEEecCcccccc
Confidence 3567899999999885543
No 65
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.98 E-value=0.0025 Score=59.63 Aligned_cols=69 Identities=28% Similarity=0.420 Sum_probs=54.3
Q ss_pred cCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcc-------------------------------c-c-
Q 007375 234 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV-------------------------------A-S- 280 (606)
Q Consensus 234 ~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~-------------------------------~-~- 280 (606)
..+++|||+|++++. |.+.+|..+++.+||+|+|+|++..+.. . .
T Consensus 51 gv~v~GkIvLvr~G~--~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~ 128 (183)
T cd02128 51 GVSVNGSVVLVRAGK--ISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPS 128 (183)
T ss_pred CCCCCCeEEEEECCC--CCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcc
Confidence 458999999999975 5689999999999999999998842100 0 0
Q ss_pred ---cCcccceEEecHHHHHHHHHHHhc
Q 007375 281 ---SYGTFPLTVISSKEAAEILAYINS 304 (606)
Q Consensus 281 ---~~~~ip~~~i~~~~g~~l~~~~~~ 304 (606)
....||+.-|+.++++.|+..+.-
T Consensus 129 ~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 129 QSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 112588999999999999987754
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.96 E-value=0.0033 Score=56.31 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=58.2
Q ss_pred ccCcccceEEEEecCCCC----chhHHH-------HHHHHhcCceEEEEEeCCCC--------ccc--ccCcccceEEec
Q 007375 233 AGALVKGKIVLCDNDDDM----GSVVDK-------KDGVKSLGGVGVIVIDDQSR--------AVA--SSYGTFPLTVIS 291 (606)
Q Consensus 233 ~~~~~~gkivl~~~~~~~----~~~~~~-------~~~~~~~Ga~g~i~~~~~~~--------~~~--~~~~~ip~~~i~ 291 (606)
...+++|||+|+.++.+. ..+..| ...+.++||.++|+++.... ... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 356899999999996540 055555 68899999999999996421 111 223469999999
Q ss_pred HHHHHHHHHHHhcCCCceE
Q 007375 292 SKEAAEILAYINSKRNPVA 310 (606)
Q Consensus 292 ~~~g~~l~~~~~~~~~~~~ 310 (606)
.++++.|...++.+....+
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765444
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.68 E-value=0.054 Score=45.85 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=66.1
Q ss_pred CCCCcCcEEEeccCCCceEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecceeeecCCCcEEEEEEEEEeccCCCCCc
Q 007375 499 SNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKED 578 (606)
Q Consensus 499 ~~ln~ps~~~~~~~~~~~~t~~rtvtn~~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 578 (606)
..|++..+.++ +..+.+++|+|.+ ..+..|++.......-.++++|..-.+ ++|++.+++|+|... ...+.
T Consensus 9 ~~ldFG~v~~g-----~~~~~~v~l~N~s-~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~--~~~g~ 79 (102)
T PF14874_consen 9 KELDFGNVFVG-----QTYSRTVTLTNTS-SIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT--KPLGD 79 (102)
T ss_pred CEEEeeEEccC-----CEEEEEEEEEECC-CCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC--CCCce
Confidence 34555543333 3677888999999 889999997654334557777877666 569999999999954 22345
Q ss_pred EEEEEEEECCceeEEEEEEEEe
Q 007375 579 VFGSITWSNGKYKVRSLFVVSS 600 (606)
Q Consensus 579 ~~G~i~~~~g~~~v~~P~~~~~ 600 (606)
+.+.|...-....+.+|+-+..
T Consensus 80 ~~~~l~i~~e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 80 YEGSLVITTEGGSFEIPVKAEV 101 (102)
T ss_pred EEEEEEEEECCeEEEEEEEEEE
Confidence 6788888765568888887654
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.88 E-value=0.044 Score=43.98 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=37.5
Q ss_pred ceEEEEEEEEeccCCCC-eEEEEEEeCCCCcEEEEecceeeecCCCcEEEEEEEEEecc
Q 007375 515 EGRTISRTVTNVAGNNE-TIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL 572 (606)
Q Consensus 515 ~~~t~~rtvtn~~~~~~-~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~ 572 (606)
...+++.+|+|.| ..+ ...++++..|.|-++...|..+.--+.||+++++++++...
T Consensus 5 ~~~~~~~tv~N~g-~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTG-TAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--S-SS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECC-CCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 4788999999998 654 56888999999999888888876557899999999998874
No 69
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.64 E-value=0.038 Score=58.08 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=65.7
Q ss_pred cCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcc--------cccCcccceEEecHHHHHHHHHHHhcC
Q 007375 234 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV--------ASSYGTFPLTVISSKEAAEILAYINSK 305 (606)
Q Consensus 234 ~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~--------~~~~~~ip~~~i~~~~g~~l~~~~~~~ 305 (606)
...+++|+++..||. |.|.+|...++.+||.++++.|+..+.+ ...+-.||++.++.++++.+.....++
T Consensus 91 ~~kl~~~~~~v~RGn--C~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGN--CSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CccccceeEEEeccc--ceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 567899999999964 7899999999999999999999965322 234457999999999999999877777
Q ss_pred CCceEEEeeC
Q 007375 306 RNPVATILPT 315 (606)
Q Consensus 306 ~~~~~~i~~~ 315 (606)
.+.++.+..+
T Consensus 169 ~~V~~~lYaP 178 (541)
T KOG2442|consen 169 DNVELALYAP 178 (541)
T ss_pred CeEEEEEECC
Confidence 7776666544
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.36 E-value=0.033 Score=49.74 Aligned_cols=64 Identities=27% Similarity=0.329 Sum_probs=48.1
Q ss_pred ccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCC----------chhHHHHHHHHhcCceEEEEEeCC
Q 007375 205 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM----------GSVVDKKDGVKSLGGVGVIVIDDQ 274 (606)
Q Consensus 205 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~----------~~~~~~~~~~~~~Ga~g~i~~~~~ 274 (606)
.-++|+.+.+. ....|....+...+++|||||+.++.+. ..+..|.+.+..+||.|+|++++.
T Consensus 23 ~gelVfvGyG~-------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 23 EAPLVFVGYGL-------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTP 95 (137)
T ss_pred eEeEEEecCCc-------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 45666655321 1234776677788999999999997642 246789999999999999999986
Q ss_pred C
Q 007375 275 S 275 (606)
Q Consensus 275 ~ 275 (606)
.
T Consensus 96 ~ 96 (137)
T cd04820 96 R 96 (137)
T ss_pred c
Confidence 6
No 71
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.29 E-value=0.073 Score=51.61 Aligned_cols=39 Identities=36% Similarity=0.372 Sum_probs=34.0
Q ss_pred cCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCC
Q 007375 234 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 274 (606)
Q Consensus 234 ~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~ 274 (606)
..+++|||+|++++. +.+..|..+++.+||+|+|++++.
T Consensus 67 gvdv~GKIvLvr~G~--~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 67 GIDVKGKIVIARYGG--IFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CCCCCCeEEEEECCC--ccHHHHHHHHHHcCCEEEEEEeCc
Confidence 568999999999865 456789999999999999999874
No 72
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.24 E-value=0.095 Score=47.69 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=58.2
Q ss_pred ccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCC----------------CchhHHHHHHHHhcCceEE
Q 007375 205 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDD----------------MGSVVDKKDGVKSLGGVGV 268 (606)
Q Consensus 205 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~----------------~~~~~~~~~~~~~~Ga~g~ 268 (606)
.-++|+.+.+. ....|....+...+++|||||+.++.. .|.+..|..++...||.|+
T Consensus 21 tg~lVfvGyGi-------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 21 TAPVVFAGYGI-------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred eEeEEEecCCc-------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 45666665421 123466666677899999999987631 2567899999999999999
Q ss_pred EEEeCCCCcccccCccc------ceEEecHHHHHHHHH
Q 007375 269 IVIDDQSRAVASSYGTF------PLTVISSKEAAEILA 300 (606)
Q Consensus 269 i~~~~~~~~~~~~~~~i------p~~~i~~~~g~~l~~ 300 (606)
|++++..... .....+ ..++++....+.+..
T Consensus 94 Iv~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 94 IVVNGPNSHS-GDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred EEEeCCcccC-cccccccccCccceEEechHHHHHHhh
Confidence 9999876332 111111 155566665555554
No 73
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=95.07 E-value=0.043 Score=49.35 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=49.6
Q ss_pred CCccceEEccCCCcCCcCccccCCCCCCCcccCcccceEEEEecCCCC----------------chhHHHHHHHHhcCce
Q 007375 203 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM----------------GSVVDKKDGVKSLGGV 266 (606)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~----------------~~~~~~~~~~~~~Ga~ 266 (606)
....++|+.+.+. ....|....+...|++|||||+.++.+. ..+..|...+..+||.
T Consensus 19 ~~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (142)
T cd04814 19 IKDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAA 91 (142)
T ss_pred ccceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCc
Confidence 3456777766421 1234777777888999999999987541 1467899999999999
Q ss_pred EEEEEeCCC
Q 007375 267 GVIVIDDQS 275 (606)
Q Consensus 267 g~i~~~~~~ 275 (606)
|+|++++..
T Consensus 92 gvIii~~~~ 100 (142)
T cd04814 92 GVLIVHELA 100 (142)
T ss_pred EEEEEeCCC
Confidence 999999876
No 74
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=93.29 E-value=1.1 Score=39.22 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=54.7
Q ss_pred cCCCceEEEEEEEEeccCCCCeEEEEEEeC----CCC--------------cE------EEEecceeeecCCCcEEEEEE
Q 007375 511 FDGKEGRTISRTVTNVAGNNETIYTVAVDA----PQG--------------LN------VKVIPEELQFTKSGQKLSYQV 566 (606)
Q Consensus 511 ~~~~~~~t~~rtvtn~~~~~~~ty~~~v~~----~~g--------------~~------v~v~p~~~~~~~~~~~~~~~v 566 (606)
+.+++..++.++|+|.+ +.+.+|.+++.. ..| +. ++ .|..+++ +++|++++++
T Consensus 23 ~~P~q~~~l~v~i~N~s-~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl-~~~~sk~V~~ 99 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNS-DKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTL-PPNESKTVTF 99 (121)
T ss_pred eCCCCEEEEEEEEEeCC-CCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEE-CCCCEEEEEE
Confidence 45566899999999999 899999997542 111 11 22 2555777 6799999999
Q ss_pred EEEeccCCCCCcEEEEEEEEC
Q 007375 567 TFTSALSPLKEDVFGSITWSN 587 (606)
Q Consensus 567 ~~~~~~~~~~~~~~G~i~~~~ 587 (606)
++..++..-.+.+.|.|.+..
T Consensus 100 ~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 100 TIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred EEEcCCCCcCCEEEeeEEEEe
Confidence 999887666788889888764
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=92.95 E-value=0.15 Score=45.98 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=34.9
Q ss_pred CcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCC
Q 007375 235 ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS 275 (606)
Q Consensus 235 ~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~ 275 (606)
-+++|||+|++.|. ..+-.|.++++..||+|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~--~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQ--APLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccC--cchHHHHHHHHHCCCeEEEEecChh
Confidence 57999999999976 4588999999999999999999865
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.51 E-value=1.3 Score=38.51 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=39.1
Q ss_pred eEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecceeeecCCCcEEEEEEEEEeccC
Q 007375 516 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALS 573 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 573 (606)
.-.++..|+|.. ..+.+|++++..++++++......+++ ++||+.++.|.+.....
T Consensus 32 ~N~Y~lkl~Nkt-~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKT-NQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-S-SS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECC-CCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 345889999999 999999999999889999664577888 56899999999988743
No 77
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.98 E-value=0.16 Score=45.39 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=65.7
Q ss_pred ccCCCCCCCcccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcc------------cccCcccceEEe
Q 007375 223 AARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV------------ASSYGTFPLTVI 290 (606)
Q Consensus 223 ~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~------------~~~~~~ip~~~i 290 (606)
...+|+... +.....+.+.|++||+ |+|..|..+++++||.++|+.++..... ..+...+|++++
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~eRGe--CSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fl 149 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALMERGE--CSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFL 149 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEecCC--ceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEE
Confidence 356787543 3456788999999965 7899999999999999999998876322 123457999999
Q ss_pred cHHHHHHHHHHHhcCCCceEEEeeC
Q 007375 291 SSKEAAEILAYINSKRNPVATILPT 315 (606)
Q Consensus 291 ~~~~g~~l~~~~~~~~~~~~~i~~~ 315 (606)
...+|.-+..-++.....-+.+..+
T Consensus 150 lg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 150 LGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred eccceEEEehhHHHhCCccEEEecc
Confidence 8888877766666655555554443
No 78
>COG1470 Predicted membrane protein [Function unknown]
Probab=90.12 E-value=3.6 Score=43.73 Aligned_cols=74 Identities=23% Similarity=0.248 Sum_probs=57.4
Q ss_pred cCCCceEEEEEEEEeccCCCC-eEEEEEEeCCCCcEEEEecceeeecCCCcEEEEEEEEEeccCCCCCcEEEEEEE
Q 007375 511 FDGKEGRTISRTVTNVAGNNE-TIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITW 585 (606)
Q Consensus 511 ~~~~~~~t~~rtvtn~~~~~~-~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~i~~ 585 (606)
+..+...++...++|.| +.+ ..-++++..|+|-++.|+|.++---++||++++++|++++.....+-++=.|+-
T Consensus 393 ~taGee~~i~i~I~NsG-na~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ 467 (513)
T COG1470 393 ITAGEEKTIRISIENSG-NAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITA 467 (513)
T ss_pred ecCCccceEEEEEEecC-CCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEE
Confidence 34455788999999999 654 678999999999999999998776678999999999998854443444444443
No 79
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.24 E-value=2 Score=44.33 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=59.7
Q ss_pred CCCCCCCc---ccCcccceEEEEecCCCCchhHHHHHHHHhcCceEEEEEeCCCCcc------cccCcccceEEecHHHH
Q 007375 225 RNCDLDSL---AGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV------ASSYGTFPLTVISSKEA 295 (606)
Q Consensus 225 ~~c~~~~~---~~~~~~gkivl~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~------~~~~~~ip~~~i~~~~g 295 (606)
.+|.+... ........++|+.|++ |+|.+|..+++.+|..++|++|+..... ......++..+++...|
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~--CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGG--CSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccC--CchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 45665433 1345667899999976 8899999999999999999999877432 23344688999999999
Q ss_pred HHHHHHHhc
Q 007375 296 AEILAYINS 304 (606)
Q Consensus 296 ~~l~~~~~~ 304 (606)
+.|..|...
T Consensus 141 e~l~~~~~~ 149 (348)
T KOG4628|consen 141 ELLSSYAGR 149 (348)
T ss_pred HHHHHhhcc
Confidence 999887544
No 80
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=81.84 E-value=12 Score=32.43 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=39.6
Q ss_pred eEEEEEEEEeccCCCCeEEEEEEeC---CCC----cEEEEecceeeecCCCcEEEEEEEEEec
Q 007375 516 GRTISRTVTNVAGNNETIYTVAVDA---PQG----LNVKVIPEELQFTKSGQKLSYQVTFTSA 571 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~~ty~~~v~~---~~g----~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 571 (606)
..+.+++|+|.+ +.+..+.+.+.. ... -.+.++|..+.+ ++|+++++.| +...
T Consensus 15 ~~~~~i~v~N~~-~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~ 74 (122)
T PF00345_consen 15 QRSASITVTNNS-DQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGS 74 (122)
T ss_dssp SSEEEEEEEESS-SSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECS
T ss_pred CCEEEEEEEcCC-CCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecC
Confidence 456789999999 777777777664 111 257799999999 5699999999 6644
No 81
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=81.33 E-value=15 Score=31.04 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=39.4
Q ss_pred eEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecceeeecCCCcEEEEEEEEEec
Q 007375 516 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 571 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 571 (606)
..+..++|+|.+ +...-|++....|..+. |.|..-.+ +++++++++|++...
T Consensus 19 ~~~~~l~l~N~s-~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPS-DKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-S-SSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCC-CCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEec
Confidence 567888999999 88899999988887665 46988777 569999999999875
No 82
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=78.29 E-value=3.8 Score=37.60 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=34.3
Q ss_pred CcccCcccceEEEEecCCCCc-----------------hhHHHHHHHHhcCceEEEEEeCCC
Q 007375 231 SLAGALVKGKIVLCDNDDDMG-----------------SVVDKKDGVKSLGGVGVIVIDDQS 275 (606)
Q Consensus 231 ~~~~~~~~gkivl~~~~~~~~-----------------~~~~~~~~~~~~Ga~g~i~~~~~~ 275 (606)
.+...|++||||++.+++... ....|...+.+.||.|+|++....
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 455778999999998654311 123588999999999999998754
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=77.20 E-value=40 Score=36.23 Aligned_cols=57 Identities=14% Similarity=0.358 Sum_probs=45.1
Q ss_pred eEEEEEEEEeccCCCCeEEEEEEe-CCCCcEEEEecce-----eeecCCCcEEEEEEEEEeccCC
Q 007375 516 GRTISRTVTNVAGNNETIYTVAVD-APQGLNVKVIPEE-----LQFTKSGQKLSYQVTFTSALSP 574 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~~ty~~~v~-~~~g~~v~v~p~~-----~~~~~~~~~~~~~v~~~~~~~~ 574 (606)
...|++++.|.| ..+.+|..++. .|++......-.. +.+ ++||+++++|.+.++...
T Consensus 285 t~sf~V~IeN~g-~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na 347 (513)
T COG1470 285 TASFTVSIENRG-KQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNA 347 (513)
T ss_pred ceEEEEEEccCC-CCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCC
Confidence 667889999999 99999999999 8888776654333 334 569999999999987533
No 84
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=72.20 E-value=18 Score=39.11 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=45.5
Q ss_pred eEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecceeeecCCCcEEEEEEEEEec
Q 007375 516 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 571 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 571 (606)
....+..+.|.+ ..+.+|+++++..++.++...++.+++ ++||+.++.|.+..+
T Consensus 347 ~N~Y~~~i~Nk~-~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKT-EQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECC-CCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEec
Confidence 455788899999 899999999999999999875457777 568999999988876
No 85
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=71.36 E-value=36 Score=30.46 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=51.4
Q ss_pred eEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecceeeecCCCcEEEEEEEEEeccCCCCCcEEEEEEEE
Q 007375 516 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWS 586 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~i~~~ 586 (606)
.+.+...+-|.....-...++.......+++--.|..+++. +++.++++.++... ....+.+||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~-P~~~~~i~~~iKVs-StetGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLA-PHGFARIKATIKVS-STETGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeC-CCcEEEEEEEEEEE-eccCCEEEEEEEEe
Confidence 45566667777622335666677677789998899999985 57788888888876 35678999999985
No 86
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=65.09 E-value=74 Score=25.86 Aligned_cols=53 Identities=25% Similarity=0.196 Sum_probs=32.2
Q ss_pred ceEEEEEEEEeccCCC-CeEEEEEEeCCCCcEEEEecceeeecCCCcEEEEEEEEEec
Q 007375 515 EGRTISRTVTNVAGNN-ETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 571 (606)
Q Consensus 515 ~~~t~~rtvtn~~~~~-~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 571 (606)
+..+++.+|+|.| .. ...+.+.+... |..+. +...-.+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G-~~~~~~~~v~~~~~-~~~~~-~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNG-TADAENVTVRLYLD-GNSVS-TVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-S-SS-BEEEEEEEEET-TEEEE-EEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECC-CCCCCCEEEEEEEC-Cceec-cEEECCc-CCCcEEEEEEEEEeC
Confidence 4888999999999 54 45677776543 33331 1111244 568888888888764
No 87
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=58.41 E-value=72 Score=26.85 Aligned_cols=55 Identities=27% Similarity=0.305 Sum_probs=35.4
Q ss_pred CceEEEEEEEEeccCCCC-eE-----EEEEEeCCCCcE---EEEecceeeecCCCcEEEEEEEEEec
Q 007375 514 KEGRTISRTVTNVAGNNE-TI-----YTVAVDAPQGLN---VKVIPEELQFTKSGQKLSYQVTFTSA 571 (606)
Q Consensus 514 ~~~~t~~rtvtn~~~~~~-~t-----y~~~v~~~~g~~---v~v~p~~~~~~~~~~~~~~~v~~~~~ 571 (606)
++..++..+++|.. +.. .+ -..++..+ |+. ....-..+++ +++|+.++++++...
T Consensus 14 G~d~~v~v~~~N~~-~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 14 GQDFTVSVSFTNPS-SEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPS 77 (107)
T ss_dssp TSEEEEEEEEEE-S-SS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCCEEEEEEEEeCC-cCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEce
Confidence 34889999999998 665 44 22234444 663 5566666777 568899999988775
No 88
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=54.98 E-value=49 Score=23.16 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=22.9
Q ss_pred EEEEeccCCCCeEEEEEEeCC-CCcEEEEecceeeecCCCcEEEEEEEE
Q 007375 521 RTVTNVAGNNETIYTVAVDAP-QGLNVKVIPEELQFTKSGQKLSYQVTF 568 (606)
Q Consensus 521 rtvtn~~~~~~~ty~~~v~~~-~g~~v~v~p~~~~~~~~~~~~~~~v~~ 568 (606)
++++|+| +.+...+ .+... .=+.++. +.-.+ ++||+..++|++
T Consensus 2 F~~~N~g-~~~L~I~-~v~tsCgCt~~~~--~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTG-DSPLVIT-DVQTSCGCTTAEY--SKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECC-CCcEEEE-EeeEccCCEEeeC--CcceE-CCCCEEEEEEEC
Confidence 5788999 5554332 22222 2233333 22223 569998888764
No 89
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=51.21 E-value=45 Score=26.57 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=28.2
Q ss_pred EEEEecceeeecCCCcEEEEEEEEEeccCCCCCcEEEEEEEECCc
Q 007375 545 NVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGK 589 (606)
Q Consensus 545 ~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~i~~~~g~ 589 (606)
.+++.|..+++ ..|+++.|+++++... . .. ...++|+...
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~--~-~~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS--A-KV-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC--C-Cc-cceEEEEECC
Confidence 57788999988 4699999999976532 1 11 5667787543
No 90
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=49.05 E-value=87 Score=36.74 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=42.1
Q ss_pred CCCCCCcCcEEEeccCC-------CceEEEEEEEEeccCCCC--eEEEEEEeCCCCcEEEEec-------ceeeecCCCc
Q 007375 497 SISNINYPSIAVSSFDG-------KEGRTISRTVTNVAGNNE--TIYTVAVDAPQGLNVKVIP-------EELQFTKSGQ 560 (606)
Q Consensus 497 ~~~~ln~ps~~~~~~~~-------~~~~t~~rtvtn~~~~~~--~ty~~~v~~~~g~~v~v~p-------~~~~~~~~~~ 560 (606)
....|.|-.|...++.- +...+++.+|||+| ..+ ++-.+-+..|.+- +. .| ..+.+ ++||
T Consensus 642 FG~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG-~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGe 717 (765)
T PRK15098 642 FGYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTG-KREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGE 717 (765)
T ss_pred ccCCCCCccEEeeccEeccccccCCCeEEEEEEEEECC-CCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCC
Confidence 34566676666544321 22688999999999 544 3444445554321 11 12 11223 6799
Q ss_pred EEEEEEEEEecc
Q 007375 561 KLSYQVTFTSAL 572 (606)
Q Consensus 561 ~~~~~v~~~~~~ 572 (606)
++++++++...+
T Consensus 718 s~~V~~~l~~~~ 729 (765)
T PRK15098 718 TQTVSFPIDIEA 729 (765)
T ss_pred eEEEEEeecHHH
Confidence 999888887663
No 91
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=48.21 E-value=74 Score=25.64 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=23.3
Q ss_pred EEEEEEEEeccCCCCeE--------EEEEEeCCCCcEEE---------EecceeeecCCCcEEEEEEEEEec
Q 007375 517 RTISRTVTNVAGNNETI--------YTVAVDAPQGLNVK---------VIPEELQFTKSGQKLSYQVTFTSA 571 (606)
Q Consensus 517 ~t~~rtvtn~~~~~~~t--------y~~~v~~~~g~~v~---------v~p~~~~~~~~~~~~~~~v~~~~~ 571 (606)
..++++|+|.+ +.+.+ |-+.+..+.|-.|- ---...++ ++||+++|+.+++..
T Consensus 2 v~~~l~v~N~s-~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~ 71 (82)
T PF12690_consen 2 VEFTLTVTNNS-DEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLK 71 (82)
T ss_dssp EEEEEEEEE-S-SS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS-
T ss_pred EEEEEEEEeCC-CCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCC
Confidence 35677888877 44332 33334434333322 11122334 468888888877654
No 92
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=47.93 E-value=14 Score=42.82 Aligned_cols=49 Identities=14% Similarity=0.015 Sum_probs=33.3
Q ss_pred cceeeecCCCcEEEEEEEEEeccCCCCCcEEEEEEEEC-----CceeEEEEEEEEee
Q 007375 550 PEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSN-----GKYKVRSLFVVSSK 601 (606)
Q Consensus 550 p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~i~~~~-----g~~~v~~P~~~~~~ 601 (606)
|+.|-+ .++.+.|.|+++++. ...+..++.|.=-| ..+..|+|+-|...
T Consensus 636 p~~l~l--~~~~R~i~VrVDpt~-l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 636 PEYLML--ANQGRGINVRVDPTG-LAPGVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred chhhee--ccCCceeEEEECCcC-CCCCcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 555554 356788999998873 44566677765433 26889999987644
No 93
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=44.92 E-value=23 Score=24.33 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhhc
Q 007375 392 VAAIKHQNPTFSPSEIKSAVMTTA 415 (606)
Q Consensus 392 aALl~~~~p~ls~~~ik~~L~~TA 415 (606)
+--|++.+|+|+...|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 446789999999999999996653
No 94
>PLN03080 Probable beta-xylosidase; Provisional
Probab=42.67 E-value=77 Score=37.22 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=42.0
Q ss_pred eEEEEEEEEeccCCCCeEEEE--EEeCCCC-c----EEEEecceeeecCCCcEEEEEEEEEe-cc----CCCCCcE--EE
Q 007375 516 GRTISRTVTNVAGNNETIYTV--AVDAPQG-L----NVKVIPEELQFTKSGQKLSYQVTFTS-AL----SPLKEDV--FG 581 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~~ty~~--~v~~~~g-~----~v~v~p~~~~~~~~~~~~~~~v~~~~-~~----~~~~~~~--~G 581 (606)
..+++++|||+| .....-.+ -+..|.. + +--+--..+.+ ++||+++++++++. .+ ...+.|. .|
T Consensus 685 ~~~v~v~VtNtG-~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G 762 (779)
T PLN03080 685 RFNVHISVSNVG-EMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLG 762 (779)
T ss_pred eEEEEEEEEECC-cccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCc
Confidence 478999999999 65544444 3444432 1 11111122333 57999998888875 32 2224443 35
Q ss_pred EEEEE--CCceeEEEE
Q 007375 582 SITWS--NGKYKVRSL 595 (606)
Q Consensus 582 ~i~~~--~g~~~v~~P 595 (606)
..++. +..|.|+++
T Consensus 763 ~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 763 DHVLMLGDLEHSLSIE 778 (779)
T ss_pred cEEEEEeCCccceEEe
Confidence 44432 235666554
No 95
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=35.82 E-value=2.7e+02 Score=23.74 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=43.9
Q ss_pred CCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCCCcEEEecccCCCCCCCCCCCCHHHHHHHHhHhc-CcEEEEe
Q 007375 76 PGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH-GITVVCS 148 (606)
Q Consensus 76 P~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~-Gv~vV~a 148 (606)
++++|+.+--+. +|....++.-++++.+.|+|+|-+|--.......+ .---++.......++ |+.||..
T Consensus 36 ~~~elvgf~~Cg---GCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~-~CP~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 36 EDVELVGFFTCG---GCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG-PCPHIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred CCeEEEEEeeCC---CCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC-CCCCHHHHHHHHHHHhCCCEeee
Confidence 468888764443 78888999999999999999999987654421001 111133333344444 8888753
No 96
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.04 E-value=2.5e+02 Score=26.47 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=42.1
Q ss_pred CceEEEEEEEEeccCCCCeEEEEEEeC----CCCcEEEEeccee--eecCCCcEEEEEEEEEeccCCCCCcEEEE--EEE
Q 007375 514 KEGRTISRTVTNVAGNNETIYTVAVDA----PQGLNVKVIPEEL--QFTKSGQKLSYQVTFTSALSPLKEDVFGS--ITW 585 (606)
Q Consensus 514 ~~~~t~~rtvtn~~~~~~~ty~~~v~~----~~g~~v~v~p~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~G~--i~~ 585 (606)
+...+++.+|.|+| + ..-|.|++.. +..+++.---.+. .--++|+..+.++++++. ..+.+.++. ++.
T Consensus 37 g~~v~V~~~iyN~G-~-~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~--~~G~f~~~~a~VtY 112 (181)
T PF05753_consen 37 GEDVTVTYTIYNVG-S-SAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK--KSGYFNFTPAVVTY 112 (181)
T ss_pred CcEEEEEEEEEECC-C-CeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee--eeEEEEccCEEEEE
Confidence 34899999999999 3 5677787765 2444432111111 112568888888888874 344554443 444
Q ss_pred EC
Q 007375 586 SN 587 (606)
Q Consensus 586 ~~ 587 (606)
.+
T Consensus 113 ~~ 114 (181)
T PF05753_consen 113 RD 114 (181)
T ss_pred EC
Confidence 43
No 97
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=34.73 E-value=18 Score=15.66 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=4.2
Q ss_pred cccCCC
Q 007375 329 YFSARG 334 (606)
Q Consensus 329 ~fSS~G 334 (606)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 98
>PRK13202 ureB urease subunit beta; Reviewed
Probab=33.19 E-value=94 Score=26.17 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=11.3
Q ss_pred EEEEEEEEeccCCCC
Q 007375 517 RTISRTVTNVAGNNE 531 (606)
Q Consensus 517 ~t~~rtvtn~~~~~~ 531 (606)
.+++++|+|+| +.+
T Consensus 21 ~~~~l~V~NtG-DRP 34 (104)
T PRK13202 21 SRLQMRIINAG-DRP 34 (104)
T ss_pred ceEEEEEEeCC-CCc
Confidence 57889999999 655
No 99
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=31.78 E-value=1e+02 Score=25.87 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=11.7
Q ss_pred eEEEEEEEEeccCCCC
Q 007375 516 GRTISRTVTNVAGNNE 531 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~ 531 (606)
..+++++|+|+| +.+
T Consensus 19 r~~~~l~V~NtG-DRp 33 (101)
T cd00407 19 REAVTLKVKNTG-DRP 33 (101)
T ss_pred CCEEEEEEEeCC-Ccc
Confidence 456888999999 655
No 100
>PRK15019 CsdA-binding activator; Provisional
Probab=31.43 E-value=47 Score=30.13 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=28.3
Q ss_pred ceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 007375 375 FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 409 (606)
Q Consensus 375 y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~ 409 (606)
--.+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 76 ~~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 76 KMHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34455565 67999999999999999999999976
No 101
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=30.78 E-value=76 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhhc
Q 007375 391 VVAAIKHQNPTFSPSEIKSAVMTTA 415 (606)
Q Consensus 391 ~aALl~~~~p~ls~~~ik~~L~~TA 415 (606)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4667889999999999999998643
No 102
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=30.61 E-value=2.1e+02 Score=20.74 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=22.9
Q ss_pred eEEEEEEEEeccCCCCeE-EEEEEeCCCCcEEEEecceeee
Q 007375 516 GRTISRTVTNVAGNNETI-YTVAVDAPQGLNVKVIPEELQF 555 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~~t-y~~~v~~~~g~~v~v~p~~~~~ 555 (606)
..+++++++|.| ....+ ..+.=..|+|+.. .|.++++
T Consensus 13 ~v~Yti~v~N~g-~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 13 TITYTITVTNNG-NVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred EEEEEEEEEECC-CCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 889999999999 54433 3344444666554 2444443
No 103
>PRK13203 ureB urease subunit beta; Reviewed
Probab=30.57 E-value=1.1e+02 Score=25.82 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=11.7
Q ss_pred eEEEEEEEEeccCCCC
Q 007375 516 GRTISRTVTNVAGNNE 531 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~ 531 (606)
..+++++|+|+| +.+
T Consensus 19 r~~~~l~V~NtG-DRP 33 (102)
T PRK13203 19 RETVTLTVANTG-DRP 33 (102)
T ss_pred CCEEEEEEEeCC-CCc
Confidence 456888999999 655
No 104
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=30.28 E-value=51 Score=29.56 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=28.9
Q ss_pred ceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 007375 375 FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSA 410 (606)
Q Consensus 375 y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~ 410 (606)
--.+.|.| =|++|-|.+|||.+.+-+.+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999998743
No 105
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=30.16 E-value=44 Score=21.81 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=10.6
Q ss_pred chhhHHHHHHHHH
Q 007375 383 MSCPHISGVVAAI 395 (606)
Q Consensus 383 mAaP~VAG~aALl 395 (606)
.|+|.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999997644
No 106
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=30.14 E-value=45 Score=24.66 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=22.6
Q ss_pred cceeeccccchhhHHHHHH------HHHHhhCCCCCHHHHHHHHH
Q 007375 374 LFNVISGTSMSCPHISGVV------AAIKHQNPTFSPSEIKSAVM 412 (606)
Q Consensus 374 ~y~~~sGTSmAaP~VAG~a------ALl~~~~p~ls~~~ik~~L~ 412 (606)
+--.+.||=+..=.+.... .-+.+.||+++.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3345566666655554443 23456799999999999984
No 107
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=29.24 E-value=1.4e+02 Score=23.24 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=19.5
Q ss_pred ceEEEEEEEEeccCCCCe-EEEEEEeCCCCcEE
Q 007375 515 EGRTISRTVTNVAGNNET-IYTVAVDAPQGLNV 546 (606)
Q Consensus 515 ~~~t~~rtvtn~~~~~~~-ty~~~v~~~~g~~v 546 (606)
...+++++|+|.| +... -.++.=..|+|+.+
T Consensus 41 d~v~ytitvtN~G-~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTG-PAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECC-CCeeEeEEEEEcCCCCCEE
Confidence 3888999999999 5442 24443334555554
No 108
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=28.15 E-value=1.3e+02 Score=25.31 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=11.7
Q ss_pred eEEEEEEEEeccCCCC
Q 007375 516 GRTISRTVTNVAGNNE 531 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~ 531 (606)
..+.+++|+|.| +.+
T Consensus 19 r~~~~l~V~NtG-DRP 33 (101)
T TIGR00192 19 RKTVSVKVKNTG-DRP 33 (101)
T ss_pred CcEEEEEEEeCC-Ccc
Confidence 456888999999 655
No 109
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=27.42 E-value=1.9e+02 Score=29.81 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=51.0
Q ss_pred cCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCC----CcEEEecccCCCCCCCCCCCCHHHHHHHHhHhcCcEEEEecC
Q 007375 75 SPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADG----VDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 150 (606)
Q Consensus 75 AP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~g----vdVIn~S~G~~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~aAG 150 (606)
.|.+++..|.+.-.+ ......|++||+.+-+.+ +|||-+-=|+.+-.+--.+.+ +..+......-++|+.+-|
T Consensus 39 ~~~~~~~~~p~~vQG-~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~--e~varai~~~~~PvisaIG 115 (319)
T PF02601_consen 39 NPIVEIILYPASVQG-EGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFND--EEVARAIAASPIPVISAIG 115 (319)
T ss_pred CCCcEEEEEeccccc-cchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccCh--HHHHHHHHhCCCCEEEecC
Confidence 577777777664333 467788999999998765 999999999875210112222 1223344467899999999
Q ss_pred CCC
Q 007375 151 NDG 153 (606)
Q Consensus 151 N~G 153 (606)
=+-
T Consensus 116 He~ 118 (319)
T PF02601_consen 116 HET 118 (319)
T ss_pred CCC
Confidence 764
No 110
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=26.51 E-value=65 Score=28.90 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=28.0
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 007375 376 NVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 409 (606)
Q Consensus 376 ~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~ 409 (606)
-.+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3455666 68999999999999999999999875
No 111
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=24.82 E-value=77 Score=27.86 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=26.6
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 007375 377 VISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSA 410 (606)
Q Consensus 377 ~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~~ 410 (606)
.+.|.|= |++|-|++|||.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 5556664 67999999999999999999998754
No 112
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=24.30 E-value=6.9e+02 Score=26.29 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=27.4
Q ss_pred CceEEEEEEEEeccCCCCeEE---E-EEEe--C----------CCC----cEEEEecceeeecCCCcEEEEEEEEEec
Q 007375 514 KEGRTISRTVTNVAGNNETIY---T-VAVD--A----------PQG----LNVKVIPEELQFTKSGQKLSYQVTFTSA 571 (606)
Q Consensus 514 ~~~~t~~rtvtn~~~~~~~ty---~-~~v~--~----------~~g----~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 571 (606)
++..+++.+|||.| +.+... . +.+. . |+. =-++|+|+.-- .+||+++++|+++-.
T Consensus 262 gR~l~~~l~VtN~g-~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI--~PGETrtl~V~a~dA 336 (381)
T PF04744_consen 262 GRTLTMTLTVTNNG-DSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPI--APGETRTLTVEAQDA 336 (381)
T ss_dssp SSEEEEEEEEEEES-SS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B---TT-EEEEEEEEE-H
T ss_pred CcEEEEEEEEEcCC-CCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCc--CCCceEEEEEEeehh
Confidence 34788999999999 555321 1 1111 1 111 02455666543 469999999988543
No 113
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=69 Score=28.82 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=26.1
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 007375 376 NVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 409 (606)
Q Consensus 376 ~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~ik~ 409 (606)
-.+.|=|= |++|.|.+|++++.+-..+|++|.+
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 34444443 6899999999999999999999853
No 114
>PRK13201 ureB urease subunit beta; Reviewed
Probab=24.17 E-value=1.5e+02 Score=26.08 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=26.6
Q ss_pred eEEEEEEEEeccCCCC----eEEEEE-----------------EeCCCCcEEEEecceeeecCCCcEEEEEEE
Q 007375 516 GRTISRTVTNVAGNNE----TIYTVA-----------------VDAPQGLNVKVIPEELQFTKSGQKLSYQVT 567 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~----~ty~~~-----------------v~~~~g~~v~v~p~~~~~~~~~~~~~~~v~ 567 (606)
..+++++|+|+| +.+ +-|++- +.-|+|..|.. ++|++++.++.
T Consensus 19 r~~~~l~V~NtG-DRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF--------EPG~~k~V~LV 82 (136)
T PRK13201 19 HPETVIEVENTG-DRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF--------EPGDKKEVQLV 82 (136)
T ss_pred CCEEEEEEEeCC-CcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE--------CCCCeEEEEEE
Confidence 456888999999 655 234432 22356666654 44888876553
No 115
>PRK13205 ureB urease subunit beta; Reviewed
Probab=23.79 E-value=1.5e+02 Score=26.72 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=11.9
Q ss_pred eEEEEEEEEeccCCCC
Q 007375 516 GRTISRTVTNVAGNNE 531 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~ 531 (606)
..+++++|+|+| +.+
T Consensus 19 R~~i~L~V~NtG-DRP 33 (162)
T PRK13205 19 REAKTIEIINTG-DRP 33 (162)
T ss_pred CcEEEEEEEeCC-CCc
Confidence 556889999999 655
No 116
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=21.42 E-value=4.4e+02 Score=21.28 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=27.9
Q ss_pred EEEEEEEeccCCCCeEEEEEEe-----CCCCcEEEEecceeeecCCCcEEEEEEEEEe
Q 007375 518 TISRTVTNVAGNNETIYTVAVD-----APQGLNVKVIPEELQFTKSGQKLSYQVTFTS 570 (606)
Q Consensus 518 t~~rtvtn~~~~~~~ty~~~v~-----~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 570 (606)
+++++|.-.+ ......+|.+. +-+|.+..-..-+|+|.+...+++|+|.+.-
T Consensus 19 ~~~v~V~R~g-~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~d 75 (90)
T smart00237 19 EVEVCVVRTG-GARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIID 75 (90)
T ss_pred EEEEEEEecC-CCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeC
Confidence 4555555545 33434444333 3355666656788889543345555555543
No 117
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.16 E-value=2.2e+02 Score=30.73 Aligned_cols=76 Identities=24% Similarity=0.352 Sum_probs=53.6
Q ss_pred ecCCCeEEEEEeeCCCCCCCHHHHHHHHHHHHHCC-CcEEEecccCCCCC-CCCCCCCHHHHHHHHhHhcCcEEEEecCC
Q 007375 74 GSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADG-VDVLSLSLGGSAGI-VRPLTDDPIALGAFHAVEHGITVVCSAGN 151 (606)
Q Consensus 74 vAP~A~L~~~kv~~~~~~~~~~~i~~ai~~A~~~g-vdVIn~S~G~~~~~-~~~~~~~~~~~~~~~a~~~Gv~vV~aAGN 151 (606)
=.|.++++.|.+.-.. ......|++||+.|-+.+ +|||=+.=|+.+-- ...+-++.+ +......-+.||.|-|-
T Consensus 159 R~P~~~viv~pt~VQG-~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~v---aRAi~~s~iPvISAVGH 234 (440)
T COG1570 159 RFPSVEVIVYPTLVQG-EGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIV---ARAIAASRIPVISAVGH 234 (440)
T ss_pred hCCCCeEEEEeccccC-CCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHH---HHHHHhCCCCeEeeccc
Confidence 3688999999875443 567788999999998876 99999998886520 012222333 33444778999999887
Q ss_pred CC
Q 007375 152 DG 153 (606)
Q Consensus 152 ~G 153 (606)
+-
T Consensus 235 Et 236 (440)
T COG1570 235 ET 236 (440)
T ss_pred CC
Confidence 64
No 118
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.84 E-value=3.2e+02 Score=26.73 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=34.4
Q ss_pred eEEEEEEEEeccCCCCeEEEEEE--eCC---CCcEEEEecceeeecCCCcEEEEEEEEE
Q 007375 516 GRTISRTVTNVAGNNETIYTVAV--DAP---QGLNVKVIPEELQFTKSGQKLSYQVTFT 569 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~~ty~~~v--~~~---~g~~v~v~p~~~~~~~~~~~~~~~v~~~ 569 (606)
....+++|+|.+ +. .|.+.. +.. ....+-|+|..+++ ++|+++.+.|...
T Consensus 39 ~~~~si~v~N~~-~~--p~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~ 93 (230)
T PRK09918 39 DGEGSINVKNTD-SN--PILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILK 93 (230)
T ss_pred CCeEEEEEEcCC-CC--cEEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEEC
Confidence 456788889988 43 465543 221 12357889999999 4688888887765
No 119
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=20.74 E-value=5.8e+02 Score=22.40 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=15.4
Q ss_pred eeeecCCCcEEEEEEEEEecc
Q 007375 552 ELQFTKSGQKLSYQVTFTSAL 572 (606)
Q Consensus 552 ~~~~~~~~~~~~~~v~~~~~~ 572 (606)
+++....|+.+.|.|.+.+..
T Consensus 74 sVTWtapgqf~~f~vs~~~~P 94 (124)
T cd08523 74 SVTWKAPSQEVRAKVSLRAEP 94 (124)
T ss_pred EEEEcCCCceEEEEEEeecCC
Confidence 366666788888998887653
No 120
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=20.50 E-value=4.1e+02 Score=26.18 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=35.7
Q ss_pred EEEEEEEEeccCCCCeEEEEEEe---CC---CC----------cEEEEecceeeecCCCcEEEEEEEEEe
Q 007375 517 RTISRTVTNVAGNNETIYTVAVD---AP---QG----------LNVKVIPEELQFTKSGQKLSYQVTFTS 570 (606)
Q Consensus 517 ~t~~rtvtn~~~~~~~ty~~~v~---~~---~g----------~~v~v~p~~~~~~~~~~~~~~~v~~~~ 570 (606)
....++|.|.| +.+..+++++. .| .+ -.+-++|..|++ ++|+++.|.|.-..
T Consensus 33 ~~~~v~V~N~g-~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 33 EATSLFVYSKS-DHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred ceEEEEEEeCC-CCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 34567889998 77777777542 22 11 157789999999 56888887766544
No 121
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=20.50 E-value=1.5e+03 Score=27.16 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=19.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhhcccC
Q 007375 392 VAAIKHQNPTFSPSEIKSAVMTTATQT 418 (606)
Q Consensus 392 aALl~~~~p~ls~~~ik~~L~~TA~~~ 418 (606)
.-=++|+||+.+.+|+..+...-+...
T Consensus 323 l~el~~~~p~~~~~~l~~~a~~~~~~~ 349 (928)
T TIGR00845 323 LKELKQKHPDKDLEQLEEMANYQVLSR 349 (928)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcc
Confidence 344578899999999887765554443
No 122
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=20.25 E-value=5.2e+02 Score=21.72 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=10.8
Q ss_pred eEEEEEEEEeccCCCC
Q 007375 516 GRTISRTVTNVAGNNE 531 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~ 531 (606)
..+++++|+|+| +.+
T Consensus 18 r~~~~l~V~N~G-DRP 32 (100)
T PF00699_consen 18 RERITLEVTNTG-DRP 32 (100)
T ss_dssp SEEEEEEEEE-S-SS-
T ss_pred CcEEEEEEEeCC-Ccc
Confidence 567889999999 655
No 123
>PRK13204 ureB urease subunit beta; Reviewed
Probab=20.04 E-value=2e+02 Score=26.11 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=11.9
Q ss_pred eEEEEEEEEeccCCCC
Q 007375 516 GRTISRTVTNVAGNNE 531 (606)
Q Consensus 516 ~~t~~rtvtn~~~~~~ 531 (606)
..+++++|+|+| +.+
T Consensus 42 r~~~~l~V~NtG-DRP 56 (159)
T PRK13204 42 RPRTTLTVRNTG-DRP 56 (159)
T ss_pred CcEEEEEEEeCC-CCc
Confidence 566889999999 655
Done!