Query 007379
Match_columns 606
No_of_seqs 248 out of 1081
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 22:47:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02258 9-cis-epoxycarotenoid 100.0 6E-148 1E-152 1237.2 57.8 554 36-606 35-590 (590)
2 PLN02491 carotenoid 9,10(9',10 100.0 3E-135 7E-140 1131.0 51.1 500 93-606 20-543 (545)
3 COG3670 Lignostilbene-alpha,be 100.0 2E-115 4E-120 922.6 33.9 446 129-600 21-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 6E-110 1E-114 922.6 37.3 455 131-599 1-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 2E-104 5E-109 894.0 43.5 452 130-599 60-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 7.1E-90 1.5E-94 759.9 25.3 510 90-606 68-582 (582)
7 KOG1285 Beta, beta-carotene 15 100.0 3E-30 6.6E-35 286.3 24.1 287 145-442 36-353 (582)
8 PF06433 Me-amine-dh_H: Methyl 88.5 41 0.00088 36.5 21.0 230 297-587 33-290 (342)
9 PF10282 Lactonase: Lactonase, 87.3 45 0.00097 35.6 24.6 99 262-367 48-163 (345)
10 COG2706 3-carboxymuconate cycl 86.1 55 0.0012 35.5 24.7 268 262-582 51-343 (346)
11 PF02239 Cytochrom_D1: Cytochr 73.4 21 0.00046 38.9 9.9 75 492-585 44-119 (369)
12 COG2706 3-carboxymuconate cycl 38.2 5.7E+02 0.012 27.9 19.6 75 455-540 267-342 (346)
13 PF02239 Cytochrom_D1: Cytochr 34.1 64 0.0014 35.2 5.2 79 495-586 279-359 (369)
14 COG3823 Glutamine cyclotransfe 31.6 35 0.00077 34.7 2.4 36 258-296 96-132 (262)
15 TIGR02276 beta_rpt_yvtn 40-res 28.0 1.1E+02 0.0025 21.4 4.1 28 564-592 12-39 (42)
16 PF13360 PQQ_2: PQQ-like domai 26.9 1.8E+02 0.0039 28.3 6.7 65 511-587 3-67 (238)
17 TIGR02658 TTQ_MADH_Hv methylam 25.4 9.1E+02 0.02 26.4 25.0 244 272-587 27-300 (352)
18 TIGR03866 PQQ_ABC_repeats PQQ- 24.7 3.9E+02 0.0083 26.4 8.7 80 495-592 217-296 (300)
19 PRK11028 6-phosphogluconolacto 24.3 7.5E+02 0.016 25.6 11.1 93 264-365 48-143 (330)
20 TIGR02658 TTQ_MADH_Hv methylam 24.2 3.2E+02 0.0069 29.9 8.3 81 497-587 13-98 (352)
21 PF14269 Arylsulfotran_2: Aryl 22.2 5.2E+02 0.011 27.4 9.4 109 480-601 139-266 (299)
22 PF02736 Myosin_N: Myosin N-te 20.0 66 0.0014 23.9 1.5 31 538-574 4-34 (42)
No 1
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=5.7e-148 Score=1237.25 Aligned_cols=554 Identities=79% Similarity=1.283 Sum_probs=510.6
Q ss_pred ecCCceeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhhcc-
Q 007379 36 LKKPTEITCSLQTPSILHFPKQSPKYPPSPAATPPPSSPPLTTKQQPKENDNFAPSKWNFLQKAAALALDAVENALVSQ- 114 (606)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 114 (606)
..+...++|.+++++++++|+++++.....+ ..+ .....+++||++|++|+++||+||+.++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (590)
T PLN02258 35 RRRKPSASSLLHTPSILPLPKLSSPSPPSVT------LPP---------AATTQTPQLNPLQRAAAAALDAVESALVSHL 99 (590)
T ss_pred CCCCcccccccCCCCCCCCCccCCCCCcccc------ccc---------cccCCccccCcchhhHHHHHHHHHHHHhhhc
Confidence 3444558889999999999988654322221 011 111345689999999999999999999998
Q ss_pred cccCCCCCCCCCccccccCCccCCCCCCCcccceeecCCCCCceEEEeecCCCCCCCCCCCccccCCCcEEEEEEecCcE
Q 007379 115 ERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSV 194 (606)
Q Consensus 115 ~~~~~~~~~~~p~~~l~gnfapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~p~~~~H~FDGDGMvha~~~~~G~v 194 (606)
++.+|+|+++||++|++|||+|++||++..+|+|+|+||+||+|+||||||||+|++..++||||||||||+|+|++|+|
T Consensus 100 ~~~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p~~~~H~FDGDGMvhav~f~dG~a 179 (590)
T PLN02258 100 ERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSA 179 (590)
T ss_pred cccCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCCCCCCccccCCceEEEEEECCCeE
Confidence 88999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EeEeeeecchHHHHHHHcCCCcccccccccCCCchhhHHHHHHhhhccCCCCCCCCCccceeeeeeeCCeEEEEEcCCcc
Q 007379 195 SYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLP 274 (606)
Q Consensus 195 ~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~l~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANt~vv~~~grLlAl~E~~~P 274 (606)
+|+||||||++|++|+++||++|++.+|++++++|++|..++++|..+|.++..+++|+|||+|++|+||||||||+|+|
T Consensus 180 ~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~P 259 (590)
T PLN02258 180 SYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLP 259 (590)
T ss_pred EEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCc
Confidence 99999999999999999999999988999999999999998899988888887778999999999999999999999999
Q ss_pred EEEEeCCCCCcccccccccCCCCccccccCceecCCCCeEEEEEeeecccCcEEEEEECCCCCccccEEeeCCCcccccc
Q 007379 275 YHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHD 354 (606)
Q Consensus 275 y~vdi~p~~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p~l~~~~~d~~G~~~~~~~i~l~~p~~~HD 354 (606)
|+|+++|++||||+|++||+|+|..+||||||+||.|||||+|+|++.++|+++||++|++|++.+.++|+++.++||||
T Consensus 260 y~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~lp~p~~~HD 339 (590)
T PLN02258 260 YQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHD 339 (590)
T ss_pred eEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEeeCCCCccccc
Confidence 99998886799999999999999889999999999999999999998788999999999999999999999999999999
Q ss_pred cccCCCeEEEeccCeeechhhhhcCCCceeecCCCceEEEEEECCCCCCCCcEEEeCCCceeeeccccccCCCCCeEEEE
Q 007379 355 FAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVI 434 (606)
Q Consensus 355 FaiTenyvVf~d~p~~~~~~~m~~g~~~~~~d~~~~tr~gVipR~~~d~~~vrw~e~p~~f~fH~~NA~Ee~~~~~vVv~ 434 (606)
|||||||+||+++|+++++.+|+.|++++.||+++++|||||||++++.+++|||++|+||+||++|||||+++|+||++
T Consensus 340 FaiTenY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd 419 (590)
T PLN02258 340 FAITENFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVI 419 (590)
T ss_pred eeccCceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999987777899999999999999999998656789999
Q ss_pred EeecCCCcchhhhchhccccceeeEEEeCCCCCeeeeeecccCCcccccCcccCCccCCCCCceEEEeccCCCCCcCcEE
Q 007379 435 GSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFA 514 (606)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~~l~r~rldl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~~~~giv 514 (606)
+||+.+.+.++++..+.++++|+||||||+||+++++.+.+ +++.++|||+||++|.||+|||+|+++.+++++++||+
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~-~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~giv 498 (590)
T PLN02258 420 GSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIIS-GEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFA 498 (590)
T ss_pred EecccChhhhcccccccccceEEEEEEECCCCceeeeEeec-CCCcccccceECHHHCCCccceEEEeccCCCCCCCeEE
Confidence 99998877777766567889999999999999999888863 11379999999999999999999999888888899999
Q ss_pred EEeccCCceEEEEcCCCccCCCcEeeeCCCCCC-CCCCcEEEEEEEeCCCCceEEEEEeCCCCCceEEEEcCCcCCCCcc
Q 007379 515 KVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSE-NEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFH 593 (606)
Q Consensus 515 K~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~-~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP~rVP~GFH 593 (606)
|+|+++|++++|++|+|+|+|||+||||+ ++. +|||||||++|||+++++|+|+||||++|++||||+||+|||||||
T Consensus 499 K~Dl~tg~~~~~~~g~g~~~gEPvFVPr~-~~~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~~VArv~LP~rVP~GFH 577 (590)
T PLN02258 499 KVDLSTGEVKKYIYGEGRYGGEPFFVPRG-SGSEAEDDGYILAFVHDEEKGKSELQVVNAVNLELEATVKLPSRVPYGFH 577 (590)
T ss_pred EEECCCCcEEEEECCCCccccCCEeccCC-CCCcccCCcEEEEEEEECCCCceEEEEEeCCCCcccEEEECCCCCCCccc
Confidence 99999999999999999999999999997 545 5999999999999999999999999999999999999999999999
Q ss_pred ccccCchhhhhcC
Q 007379 594 GTFIGAKDLAKQA 606 (606)
Q Consensus 594 G~fv~~~~l~~q~ 606 (606)
|+|++++||++|+
T Consensus 578 G~wv~~~~l~~q~ 590 (590)
T PLN02258 578 GTFISAEDLLKQA 590 (590)
T ss_pred ccccCHHHHhhcC
Confidence 9999999999995
No 2
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=3.1e-135 Score=1131.04 Aligned_cols=500 Identities=39% Similarity=0.716 Sum_probs=457.6
Q ss_pred cchhHHHHHHHHHHHHHHhhcccccCCCCCCCCCccccccCCccCCCCC-CCcccceeecCCCCCceEEEeecCCCCCCC
Q 007379 93 WNFLQKAAALALDAVENALVSQERQHPLPKTADPTVQIAGNFSPVPEKP-VCQNLPTTGKVPDCIQGVYVRNGANPLHEP 171 (606)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~gnfapv~ee~-~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~p 171 (606)
=|++|+++++++|++|+.++++ +++++||+++++|||+|+.+|. +..+|+|+|+||+||+|+||||||||+|++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~~ 94 (545)
T PLN02491 20 PRPSKGLTSKAVDLLEKLIVKL-----MHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFSP 94 (545)
T ss_pred CchhhhhhHHHHHHHHHHHHhh-----ccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCCC
Confidence 3588999999999999999886 7889999999999999997665 578899999999999999999999999999
Q ss_pred CCCCccccCCCcEEEEEEecCcEEeEeeeecchHHHHHHHcCCCcccccccccCCCchhhHHHHHHhhhccCCCCCCCCC
Q 007379 172 VAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGT 251 (606)
Q Consensus 172 ~~~~H~FDGDGMvha~~~~~G~v~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~l~g~~g~ar~~~~~~r~~~g~~~~~~~~ 251 (606)
..++||||||||||+|+|++|+|+|+||||||++|++|+++|+++|++ ++.++|+.|+++..++..|...+..+...++
T Consensus 95 ~~~~H~FDGDGMlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~~~~-~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~ 173 (545)
T PLN02491 95 VAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQQLRAKLKVLDFSYGN 173 (545)
T ss_pred CCCCccccCCccEEEEEEcCCcEEEEeeeecccchhhhhhcCcccccc-cccccccchhhhhhhhhhhccccccccccCC
Confidence 889999999999999999999999999999999999999999999998 8999998888888877777766655555568
Q ss_pred ccceeeeeeeCCeEEEEEcCCccEEEEe-CCCCCcccccccccCCCCccccccCceecCCCCeEEEEEeeecccCcEEEE
Q 007379 252 GVANAGLVYFNNRLLAMSEDDLPYHVRV-TPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYF 330 (606)
Q Consensus 252 ~~ANt~vv~~~grLlAl~E~~~Py~vdi-~p~~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p~l~~~ 330 (606)
++|||||++|+||||||+|+|+||++++ || +||||+|++||+|+|..+||||||+||+|||||+|+|+. .+|+++|+
T Consensus 174 ~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp-~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~-~~p~~~y~ 251 (545)
T PLN02491 174 GTGNTALIYHHGKLLALSEADKPYVVKVLED-GDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSH-EPPYITYR 251 (545)
T ss_pred CCCceeEEEECCEEEEEEcCCCCeEecCCCC-CCcceeeecccCCccCcccccCccCcCCCCCEEEEEecC-CCCcEEEE
Confidence 9999999999999999999999999996 77 999999999999999989999999999999999999997 46899999
Q ss_pred EECCCCCccccEEeeCCCcccccccccCCCeEEEeccCeeechhhhhcCC-CceeecCCCceEEEEEECCCCCCCCcEEE
Q 007379 331 RFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGG-SPVIYDKNKVSRFGILDKNATDASKMKWI 409 (606)
Q Consensus 331 ~~d~~G~~~~~~~i~l~~p~~~HDFaiTenyvVf~d~p~~~~~~~m~~g~-~~~~~d~~~~tr~gVipR~~~d~~~vrw~ 409 (606)
++|++|++.+.++|+++.++|||||||||||+||+++|+++++.+|++|+ .++.||+++++|||||||++++.+.+|||
T Consensus 252 ~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~ 331 (545)
T PLN02491 252 VISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWF 331 (545)
T ss_pred EECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999998765 56789999999999999998777789999
Q ss_pred eCCCceeeeccccccCCCCCeEEEEEeecCCCc-----chhhhchhccccceeeEEEeCCCCCeeeeeecccCCcccccC
Q 007379 410 DAPDCFCFHLWNAWEEPERDEVVVIGSCMTPAD-----SIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEA 484 (606)
Q Consensus 410 e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~~-----~~~~~~~~~l~~~l~r~rldl~tG~~~~~~l~~~~~~~~~Ef 484 (606)
++|+||+||++|||||+ |+||++.||+.+.+ ..+.+..+.+.++|+||||||+||+++++.|. +.++||
T Consensus 332 e~~~~f~fH~~NA~Ee~--~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~----~~~~Ef 405 (545)
T PLN02491 332 ELPNCFIFHNANAWEEE--DEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLS----ASAVDF 405 (545)
T ss_pred EcCCceEeecCCccccC--CeEEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccC----Cccccc
Confidence 99999999999999985 78999999886543 12222234456899999999999999999886 689999
Q ss_pred cccCCccCCCCCceEEEeccCCCCCcCcEEEEeccC----Cce---------EEEEcCCCccCCCcEeeeCCCC-CCCCC
Q 007379 485 GMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLT----GQV---------NKFIYGDQRYGGEPLFFPRDPN-SENED 550 (606)
Q Consensus 485 P~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~t----g~~---------~~~~~g~g~~~gEPvFVPr~p~-~~~ED 550 (606)
|+||++|.||+|||+|+++.+++++++||+|+|+++ |+. +.|++|+|+|+|||+||||+++ +.+||
T Consensus 406 P~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~ED 485 (545)
T PLN02491 406 PRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEED 485 (545)
T ss_pred CccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccC
Confidence 999999999999999999888888899999999996 433 4799999999999999999755 36899
Q ss_pred CcEEEEEEEeCCCCceEEEEEeCCCCC--ceEEEEcCCcCCCCccccccCchhhhhcC
Q 007379 551 DGYILAFVHDEKEWKSELQIVNAMTLE--LEATVKLPSRVPYGFHGTFIGAKDLAKQA 606 (606)
Q Consensus 551 DGyLLs~V~d~~~~~SeL~VlDA~~l~--pvArv~LP~rVP~GFHG~fv~~~~l~~q~ 606 (606)
|||||++|||+++++|+|+||||++|+ |||+|+||+||||||||+|++++||++|+
T Consensus 486 DG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~~~ 543 (545)
T PLN02491 486 DGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQA 543 (545)
T ss_pred CcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHHhh
Confidence 999999999999999999999999998 99999999999999999999999999984
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-115 Score=922.57 Aligned_cols=446 Identities=36% Similarity=0.627 Sum_probs=391.8
Q ss_pred ccccCCccCCCCCCCcccc-eeecCCCCCceEEEeecCCCCCCC-CCCCccccCCCcEEEEEEecC-cEEeEeeeecchH
Q 007379 129 QIAGNFSPVPEKPVCQNLP-TTGKVPDCIQGVYVRNGANPLHEP-VAGHHFFDGDGMVHAVKFNKG-SVSYSCRFTETNR 205 (606)
Q Consensus 129 ~l~gnfapv~ee~~~~~l~-V~G~IP~~L~Gt~~RNGPnp~~~p-~~~~H~FDGDGMvha~~~~~G-~v~y~~RfV~T~~ 205 (606)
+.+|+|+|+.+|.+...|+ |+|+||++|+|+|||||||++..+ .+.+||||||||||+|.|.|| +|+|+||||||.+
T Consensus 21 ~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT~g 100 (490)
T COG3670 21 YWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRTQG 100 (490)
T ss_pred hhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEeece
Confidence 5899999999999998898 999999999999999999999877 678999999999999999995 9999999999999
Q ss_pred HHHHHHcCCCcccccccccCCCchhhHHHHHHhhhccCCCCCCCCCccceeeeeeeCCeEEEEEcCCccEEEEeCCCCCc
Q 007379 206 FVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGEL 285 (606)
Q Consensus 206 ~~~E~~~Gr~~~~~~~g~l~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANt~vv~~~grLlAl~E~~~Py~vdi~p~~tL 285 (606)
|.+|.++|++++++.++...+. .|.. .+ .+ ..+|.|||||++|+++|+||||+|.||+|| | .||
T Consensus 101 ~~ae~~Ag~~l~~g~~~~~p~~---~~~~---~~--~~-----~lkn~aNTsVi~~~~~LlalwEgG~pyrLd--p-~tL 164 (490)
T COG3670 101 YLAENEAGKPLWGGLGETQPPG---VRPH---SR--TG-----DLKNAANTSVIMHGDELLALWEGGSPYRLD--P-DTL 164 (490)
T ss_pred eehhhhcCcceeccccccCCCC---cCcC---cc--cc-----ccccCCccceEeehhHHHHHHhcCCccccC--h-hHh
Confidence 9999999999998855443321 1110 00 11 137889999999999999999999999988 7 899
Q ss_pred ccccccccCC-CCccccccCceecCCCCeEEEEEeeecccCcEEEEEECCCCCccccEEeeCCCcccccccccCCCeEEE
Q 007379 286 KTVGRFDFSG-QLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVV 364 (606)
Q Consensus 286 eTlG~~df~g-~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p~l~~~~~d~~G~~~~~~~i~l~~p~~~HDFaiTenyvVf 364 (606)
+|+|..+|+| ++.++|+||||+||.||||++|||+... ++++||++|++|++++.+.|++|.+.|||||+||+||+||
T Consensus 165 ~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~-~~l~~~~v~~~G~l~r~~~i~lpg~~~~HDFa~T~~y~If 243 (490)
T COG3670 165 ETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFAL-PYLTYYVVDADGELRRTVDIPLPGPPMMHDFAITENYLIF 243 (490)
T ss_pred hhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCC-CeeEEEEECCCCcEEEeeeeecCCCccceeeeecCceEEE
Confidence 9999999999 5566899999999999999999999765 5999999999999999999999999999999999999999
Q ss_pred eccCeeech-hhhhc---CCCceeecCCCceEEEEEECCCCCCCCcEEEeCCCceeeeccccccCCCCCeEEEEEeecCC
Q 007379 365 PDQQVVFKL-KEMIR---GGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTP 440 (606)
Q Consensus 365 ~d~p~~~~~-~~m~~---g~~~~~~d~~~~tr~gVipR~~~d~~~vrw~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~ 440 (606)
++.|+.+|+ .+++. .+.++.|+|+.++||+||||.+ + ++|||||+|+||+||+.||||++ |++|+++++..+
T Consensus 244 ~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~--d~~v~~d~~~~~ 319 (490)
T COG3670 244 FDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEG--DEVVLVDFLRYD 319 (490)
T ss_pred EeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecC--CCcEEEEEEeec
Confidence 999999994 44442 3678999999999999999986 4 68999999999999999999997 455666665543
Q ss_pred Cc-chhhhc---h----h-ccccceeeEEEeCCCCCeeeeeecccCCcccccCcccCCccCCCCCceEEEeccCC-CCCc
Q 007379 441 AD-SIFNEC---D----E-SLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEP-WPKV 510 (606)
Q Consensus 441 ~~-~~~~~~---~----~-~l~~~l~r~rldl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p-~~~~ 510 (606)
.- ...... . . .-.++|+||+|||+||++..+.+. ++.+|||+||++|+|++|||+|++...| ++.+
T Consensus 320 ~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~----~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~ 395 (490)
T COG3670 320 DFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLD----DRACEFPRINPRYVGQPYRYTYMSGARPGTFLF 395 (490)
T ss_pred ccccccccccccccccccccCCCcceEEEEccccchhHHHhhh----hhhcccCccChhhcCCceEEEEEecccCCccch
Confidence 22 111111 0 1 115899999999999999888887 6999999999999999999999997765 4555
Q ss_pred Cc---EEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCC--ceEEEEcC
Q 007379 511 SG---FAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLE--LEATVKLP 585 (606)
Q Consensus 511 ~g---ivK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~--pvArv~LP 585 (606)
+| |+|+|++||+.+.|++|+++|++||+||||+ ++.+|||||||++|+|.+.++|||+|+||+++. ||||+.||
T Consensus 396 ~g~~~l~k~D~~tg~~~~~~~g~~~y~~E~vfvPrp-g~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~l~Lp 474 (490)
T COG3670 396 QGLQTLAKHDLETGTSQVYSFGPRGYGSEPVFVPRP-GSSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIARLALP 474 (490)
T ss_pred hhcceeEEEeccCCcEEEEecCCCCcccccccccCC-CCCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceEEecc
Confidence 67 9999999999999999999999999999996 899999999999999999999999999999975 99999999
Q ss_pred CcCCCCccccccCch
Q 007379 586 SRVPYGFHGTFIGAK 600 (606)
Q Consensus 586 ~rVP~GFHG~fv~~~ 600 (606)
++|||||||+|++.+
T Consensus 475 ~~vP~gfHG~w~~~~ 489 (490)
T COG3670 475 QRVPYGFHGNWVPTE 489 (490)
T ss_pred ccccccccccccccc
Confidence 999999999999875
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=5.5e-110 Score=922.58 Aligned_cols=455 Identities=35% Similarity=0.636 Sum_probs=344.4
Q ss_pred ccCCccCCCCC-CCcccceeecCCCCCceEEEeecCCCCC--CCCCCCccccCCCcEEEEEEecCcEEeEeeeecchHHH
Q 007379 131 AGNFSPVPEKP-VCQNLPTTGKVPDCIQGVYVRNGANPLH--EPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFV 207 (606)
Q Consensus 131 ~gnfapv~ee~-~~~~l~V~G~IP~~L~Gt~~RNGPnp~~--~p~~~~H~FDGDGMvha~~~~~G~v~y~~RfV~T~~~~ 207 (606)
+|+|+|+.+|. +..+++|+|+||+||+|+|||||||+++ .....+||||||||||+|+|++|+|+|+||||||++|+
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~ 80 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYK 80 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHH
T ss_pred CCCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHH
Confidence 58999999888 6778999999999999999999999887 34578999999999999999999999999999999999
Q ss_pred HHHHcCCCcccccccccCCCchhhHHHHHHhhhccCCCCCCCCCccceeeeeeeCCeEEEEEcCCccEEEEeCCCCCccc
Q 007379 208 QERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKT 287 (606)
Q Consensus 208 ~E~~~Gr~~~~~~~g~l~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANt~vv~~~grLlAl~E~~~Py~vdi~p~~tLeT 287 (606)
+|+++||.+|++.+|+.... +-.+.. +... ........+|+|||||++|+||||||||+|.||+|| | .||||
T Consensus 81 ~e~~~g~~~~~g~~gt~~~~-~~~~~~-~~~~---~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lD--p-~TLeT 152 (486)
T PF03055_consen 81 AEREAGRRLYRGEFGTVPLP-DPCRNI-FRFP---MPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELD--P-DTLET 152 (486)
T ss_dssp HHHHHTSS-SC-TTTCTTCS-THHHHT-CHHT---TS--GGGB-----SEEEEETTEEEEE-TTSEEEEEE--T-TTCEE
T ss_pred HHHhcCCceecccccccccC-chhhhh-hhhc---cccccccCCCCceeeeEEECCEEEEEEcCCCCEEec--h-hHhhh
Confidence 99999999998878765411 111110 0000 011112347899999999999999999999999999 8 99999
Q ss_pred ccccccCCCCc-cccccCceecCCCCeEEEEEeeecc--cCcEEEEEECCCCCccccEEe-eCCCcccccccccCCCeEE
Q 007379 288 VGRFDFSGQLK-STMIAHPKVDPVTGDLFALSYDVVK--KPYLKYFRFSPQGIKSPDVEI-PLEEPTMMHDFAITENFVV 363 (606)
Q Consensus 288 lG~~df~g~l~-~~~tAHPk~Dp~TGel~~~~y~~~~--~p~l~~~~~d~~G~~~~~~~i-~l~~p~~~HDFaiTenyvV 363 (606)
+|.+||+|+|+ ..||||||+||+||||++|+|+... .|.+++|+++++|++....++ +++.++|||||+|||||+|
T Consensus 153 ~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V 232 (486)
T PF03055_consen 153 LGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVTENYVV 232 (486)
T ss_dssp EEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCCCS-B-----EE-SSEEE
T ss_pred cCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccCCCCcccccccccCceEE
Confidence 99999999999 4899999999999999999999665 589999999999976655665 8999999999999999999
Q ss_pred EeccCeeechhhhhcCC---CceeecCCCceEEEEEECCCCCCCCcEEEeCCCceeeeccccccCCCC-CeEEEEEeecC
Q 007379 364 VPDQQVVFKLKEMIRGG---SPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPER-DEVVVIGSCMT 439 (606)
Q Consensus 364 f~d~p~~~~~~~m~~g~---~~~~~d~~~~tr~gVipR~~~d~~~vrw~e~p~~f~fH~~NA~Ee~~~-~~vVv~~~~~~ 439 (606)
|+++|+.+++.+++.|. .++.|+|++++||+||||++++ ..++||++|+||+||++||||++++ ++||++.|++.
T Consensus 233 ~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~ 311 (486)
T PF03055_consen 233 FPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYD 311 (486)
T ss_dssp EEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEEC
T ss_pred EEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceEEEEEEeecC
Confidence 99999999999999887 7999999999999999998754 6899999999999999999999742 38888877776
Q ss_pred CCcchhhh----c-------hhccccceeeEEEeCC--CCCeeeeeecccCCcc-cccCcccCCccCCCCCceEEEeccC
Q 007379 440 PADSIFNE----C-------DESLKSVLSEIRLNLK--TGESTRRPIISEDEQV-NLEAGMVNRNLLGRKTRFAYLALAE 505 (606)
Q Consensus 440 ~~~~~~~~----~-------~~~l~~~l~r~rldl~--tG~~~~~~l~~~~~~~-~~EfP~In~~~~Gr~~Ry~Y~~~~~ 505 (606)
+.+.+... . .....++|+||+||++ +|+++++.|. +. ++|||+||++|.||+|||+|++...
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~----~~~~~EfP~in~~~~g~~~ry~Y~~~~~ 387 (486)
T PF03055_consen 312 DPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLD----DGNPCEFPRINPRYSGRPYRYVYAVGMD 387 (486)
T ss_dssp SSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEE----TTEEEEEEEE-GGGTTS--SEEEEEEEC
T ss_pred CcccccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhc----cCCCcccceeCcccCCCcccEEEEEeec
Confidence 54422111 0 1234678999999999 8989888877 45 6999999999999999999987654
Q ss_pred C----CCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCC--ce
Q 007379 506 P----WPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLE--LE 579 (606)
Q Consensus 506 p----~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~--pv 579 (606)
+ ...+++|+|+|++||+++.|.+++++|++||+||||+ ++.+|||||||++|+|.++++|+|+||||++|+ ||
T Consensus 388 ~~~~~~~~~~~l~k~D~~tg~~~~~~~~~~~~~~EpvFVPr~-~~~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~~GPv 466 (486)
T PF03055_consen 388 PERSPGFPFNGLVKVDLETGEVQRWSFGPGCFPGEPVFVPRP-GGAEEDDGYLLSVVYDSDTNRSELLVLDAKDLEEGPV 466 (486)
T ss_dssp SCTS---EEEEEEEEETTTTEEEEEE-TTTEEE--EEEEE-T-TS-STT-EEEEEEEEETTTTCEEEEEEETTTTCE--E
T ss_pred ccCCcCcCCCEEEEEecccccceEEECCCCceecceEeccCC-CCCCCCceEEEEEEEECCCCccEEEEEeCCCCCcCce
Confidence 3 3468999999999999999999999999999999996 788999999999999999999999999999998 59
Q ss_pred EEEEcCCcCCCCccccccCc
Q 007379 580 ATVKLPSRVPYGFHGTFIGA 599 (606)
Q Consensus 580 Arv~LP~rVP~GFHG~fv~~ 599 (606)
||++||++||+||||+|+++
T Consensus 467 Ar~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 467 ARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp EEEEESS---S-SEEEEEE-
T ss_pred EEEECCCCCCCCccccccCC
Confidence 99999999999999999874
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=2.4e-104 Score=894.04 Aligned_cols=452 Identities=24% Similarity=0.424 Sum_probs=372.4
Q ss_pred cccCCccCCCCC-CCccc-ceeecCCCCC-ceEEEeecCCCCCCCC-CCCccccCCCcEEEEEEecC--cEEeEeeeecc
Q 007379 130 IAGNFSPVPEKP-VCQNL-PTTGKVPDCI-QGVYVRNGANPLHEPV-AGHHFFDGDGMVHAVKFNKG--SVSYSCRFTET 203 (606)
Q Consensus 130 l~gnfapv~ee~-~~~~l-~V~G~IP~~L-~Gt~~RNGPnp~~~p~-~~~H~FDGDGMvha~~~~~G--~v~y~~RfV~T 203 (606)
.+++|+|+++|. +..+| +|+|+||+|| +|+|||||||+++.+. ..+||||||||||+|+|++| +|+|+||||||
T Consensus 60 ~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVrT 139 (610)
T PLN02969 60 YQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVKT 139 (610)
T ss_pred hhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeecc
Confidence 589999999888 56677 5999999999 9999999999877553 46899999999999999998 49999999999
Q ss_pred hHHHHHHHcCCCccc----ccccccCCCchhhHHHHHHhhhccCCCCCCCCCccceeeeeeeCCeEEEEEcCCccEEEEe
Q 007379 204 NRFVQERSLGRPVFP----KAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRV 279 (606)
Q Consensus 204 ~~~~~E~~~Gr~~~~----~~~g~l~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANt~vv~~~grLlAl~E~~~Py~vdi 279 (606)
++|++|+++|+.++. +.++.+.+. ....+....+|+|||||++|+||||||||+|.||+||
T Consensus 140 ~~~~~E~~ag~~~~~~~~~~pfs~~~~~--------------~~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lD- 204 (610)
T PLN02969 140 EAKKEEHDPETRTWRFTYRGPFSVLKGG--------------KRVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEID- 204 (610)
T ss_pred HHHHHHHHhCCcceeeeeccchhcccCC--------------CCcccccccccCCCcceeeeCCEEEEecCCCCCeEcC-
Confidence 999999999987653 222221110 0000111236899999999999999999999999988
Q ss_pred CCCCCccccccccc-----------------------------CCCCc---cccccCceecCCCCeEEEEEeee----cc
Q 007379 280 TPSGELKTVGRFDF-----------------------------SGQLK---STMIAHPKVDPVTGDLFALSYDV----VK 323 (606)
Q Consensus 280 ~p~~tLeTlG~~df-----------------------------~g~l~---~~~tAHPk~Dp~TGel~~~~y~~----~~ 323 (606)
| .||||+|++|| .|+++ .+||||||+||.||||++|+|+. ..
T Consensus 205 -P-~TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~ 282 (610)
T PLN02969 205 -S-GTLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLP 282 (610)
T ss_pred -c-CccceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCC
Confidence 8 99999999999 44554 36899999999999999999986 35
Q ss_pred cCcEEEEEECCCCCccccEEeeCCCcccccccccCCCeEEEeccCeeechhhhh---cCC----CceeecCCCce-EEEE
Q 007379 324 KPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMI---RGG----SPVIYDKNKVS-RFGI 395 (606)
Q Consensus 324 ~p~l~~~~~d~~G~~~~~~~i~l~~p~~~HDFaiTenyvVf~d~p~~~~~~~m~---~g~----~~~~~d~~~~t-r~gV 395 (606)
++.++||++|++|++.+.++|++|.++|||||||||||+||+++|+++|+.+++ .|. .++.|+|++++ ||+|
T Consensus 283 ~~~~~~y~~d~~G~~~~~~~~~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~V 362 (610)
T PLN02969 283 RSNFTFYEFDADFKLVQRKEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYL 362 (610)
T ss_pred CceeEEEEECCCCCEecceeecCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEE
Confidence 688999999999999999999999999999999999999999999999988644 343 45899999995 8999
Q ss_pred EECCCCCC-CCcEE---EeCC-CceeeeccccccCCC-CC--eEEEEEeec-CCCcchhhh---------ch--------
Q 007379 396 LDKNATDA-SKMKW---IDAP-DCFCFHLWNAWEEPE-RD--EVVVIGSCM-TPADSIFNE---------CD-------- 449 (606)
Q Consensus 396 ipR~~~d~-~~vrw---~e~p-~~f~fH~~NA~Ee~~-~~--~vVv~~~~~-~~~~~~~~~---------~~-------- 449 (606)
|||++++. ..++| |++| +||+||++|||||++ +| +||++.|+. ++.-.++.. ..
T Consensus 363 ipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (610)
T PLN02969 363 LPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAK 442 (610)
T ss_pred EECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccccccccccccCcchhcccC
Confidence 99997542 57899 9998 599999999999742 23 477776532 221111100 00
Q ss_pred -hccccceeeEEEeCC-CCCe---eeeeecccCCcccccCcccCCccCCCCCceEEEeccCC------CCCcCcEEEEec
Q 007379 450 -ESLKSVLSEIRLNLK-TGES---TRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEP------WPKVSGFAKVDL 518 (606)
Q Consensus 450 -~~l~~~l~r~rldl~-tG~~---~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p------~~~~~givK~Dl 518 (606)
....++|+||+||+. +|++ +.+.|.. ..+.++|||+||++|.||+|||+|++..++ +..+++|+|+|+
T Consensus 443 ~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~-~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~ 521 (610)
T PLN02969 443 GKELLPHLVQVSIDLDRTGDCRSCDVEPLSN-QWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDV 521 (610)
T ss_pred cccccceEEEEEEeCCcCCccccccceeecc-ccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEEC
Confidence 112468999999996 6775 3355531 114689999999999999999999987642 235799999999
Q ss_pred cCCceEEEEcCCCccCCCcEeeeCC--CCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCC----ceEEEEcCCcC--CC
Q 007379 519 LTGQVNKFIYGDQRYGGEPLFFPRD--PNSENEDDGYILAFVHDEKEWKSELQIVNAMTLE----LEATVKLPSRV--PY 590 (606)
Q Consensus 519 ~tg~~~~~~~g~g~~~gEPvFVPr~--p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~----pvArv~LP~rV--P~ 590 (606)
++|+++.|++|+++|+|||+||||+ |++++|||||||++|+|.++++|+|+||||++|+ ||||++||+|| |+
T Consensus 522 ~tg~~~~w~~g~~~~~~EPvFVPr~~~p~~~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P~ 601 (610)
T PLN02969 522 PDGSARSWSTGARRFVGEPVFVPRKSSQGGGEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFPM 601 (610)
T ss_pred CCCCEEEEEeCCCCcccCCEEecCCCCCCCCccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCCc
Confidence 9999999999999999999999995 3578899999999999999999999999999997 59999999998 99
Q ss_pred CccccccCc
Q 007379 591 GFHGTFIGA 599 (606)
Q Consensus 591 GFHG~fv~~ 599 (606)
||||+|+++
T Consensus 602 GfHG~w~~~ 610 (610)
T PLN02969 602 GFHGFWADE 610 (610)
T ss_pred cccccccCC
Confidence 999999874
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.1e-90 Score=759.93 Aligned_cols=510 Identities=50% Similarity=0.788 Sum_probs=482.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhcc-cccCCCCCCCCCccccccCCccCCCCCCCcccceeecCCCCCceEEEeecCCCC
Q 007379 90 PSKWNFLQKAAALALDAVENALVSQ-ERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPL 168 (606)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~l~gnfapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGPnp~ 168 (606)
...+++.+..+..++|.. ..+..+ ....+++++++|++++++||+|+.|.++...+.++|.+|.+++|.++|||||+.
T Consensus 68 h~fd~~~~~~~~~~~dg~-~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~ 146 (582)
T KOG1285|consen 68 HLFDGPALLHAFHFLDGR-VYYSSRYLESDPYKKTVDPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPN 146 (582)
T ss_pred ccccchhhhhheeecCCe-EEEEeeecccCCcccccccceeeeccccccCCCCCccCcceeeeeeecccccccccCCCcc
Confidence 344689999999999987 334444 446889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCcEEEEEEecC--cEEeEeeeecchHHHHHHHcCCCcccccccccCCCchhhHHHHHHhhhccCCCC
Q 007379 169 HEPVAGHHFFDGDGMVHAVKFNKG--SVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVD 246 (606)
Q Consensus 169 ~~p~~~~H~FDGDGMvha~~~~~G--~v~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~l~g~~g~ar~~~~~~r~~~g~~~ 246 (606)
|.|.+++|+||||||+|+++|+.| +++|++||.+| |++|..+|+..+++.+|+++|+.|.+|+..+++|.+.++.+
T Consensus 147 f~pv~g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~ 224 (582)
T KOG1285|consen 147 FTPVGGHHLYAGTETPHAVKIDPGTLETTYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKN 224 (582)
T ss_pred eeecCCCeeEecCCCceeEEecCcccceeEeeccccc--eeeeeecccCCcccCcccEEeeechhhccccccceeEEEec
Confidence 999999999999999999999999 78999999999 99999999999999999999999999999889999999999
Q ss_pred CCCCCccceeeeeeeCCeEEEEEcCCccEEEEeCCCCCccc-ccccccCCCCccccccCceecCCCCeEEEEEeeecccC
Q 007379 247 PSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKT-VGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKP 325 (606)
Q Consensus 247 ~~~~~~~ANt~vv~~~grLlAl~E~~~Py~vdi~p~~tLeT-lG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p 325 (606)
+..+.+.+|+.++++.++++|+.|+++||.+.+...|++|| ||+++|+++|...+.||||+||.|||+|+++|+..+++
T Consensus 225 p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~ 304 (582)
T KOG1285|consen 225 PANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKP 304 (582)
T ss_pred CCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCC
Confidence 98899999999999999999999999999998877799999 99999999999999999999999999999999999999
Q ss_pred cEEEEEECCCCCccccEEeeCCCcccccccccCCCeEEEeccCeeechhhhhcCCCceeecCCCceEEEEEECCCCCCCC
Q 007379 326 YLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASK 405 (606)
Q Consensus 326 ~l~~~~~d~~G~~~~~~~i~l~~p~~~HDFaiTenyvVf~d~p~~~~~~~m~~g~~~~~~d~~~~tr~gVipR~~~d~~~ 405 (606)
++.|++++.+|.+...+.|....++|+||||+|||++|++|+++.+++.+|..+++++.++..+..||++.+++..+.++
T Consensus 305 ~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~ 384 (582)
T KOG1285|consen 305 YLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARR 384 (582)
T ss_pred cEEEEEeccccCccCcceeccCcceEEEeeeecccCceEEEEEEEechhhhhcccceeecccccccccccccccCCcccc
Confidence 99999999999999999888789999999999999999999999999999999988999999999999999999999999
Q ss_pred cEEEeCCCceeeeccccccCCCCC-eEEEEEeecCCCcchhhhchhccccceeeEEEeCCCCCeeeeeecccCCcccccC
Q 007379 406 MKWIDAPDCFCFHLWNAWEEPERD-EVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEA 484 (606)
Q Consensus 406 vrw~e~p~~f~fH~~NA~Ee~~~~-~vVv~~~~~~~~~~~~~~~~~~l~~~l~r~rldl~tG~~~~~~l~~~~~~~~~Ef 484 (606)
++|.+.++|++||++|+||+.+.+ +++|...|+.+.+.++++.++.+..+|.+.|++++||...++.+.. ..++|+
T Consensus 385 ~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~---~~nl~~ 461 (582)
T KOG1285|consen 385 IVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRESDELLGNRLEEIRLNLKTGLEFPRPVIP---KINLDF 461 (582)
T ss_pred eEEEeccccccccchhhhcccCCCceEEeecccCCccchhhcccccchhceeeeeeecccccccccceeec---cccccc
Confidence 999999999999999999975444 7888899999999999988899999999999999999998888874 479999
Q ss_pred cccCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCC
Q 007379 485 GMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEW 564 (606)
Q Consensus 485 P~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~ 564 (606)
++||..|.||+|||+|+++.++|++++||+|+|+.+|++++|.+|.++++|||+|||++ ++.+|||||||++|||++++
T Consensus 462 ~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~g~~~~w~~~~~~~~GEP~FVP~p-~~~eEDdG~Iv~~v~~~~~~ 540 (582)
T KOG1285|consen 462 GMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVTGEVKKWREGGGRPGGEPIFVPRP-GTLEEDDGYIVSVVHDESKE 540 (582)
T ss_pred ccccceeecccceEEEEEecCCccCCCeEEEEEecCCceeeEecCCCccCCCceEecCC-CCcccCCcEEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999996 78899999999999999999
Q ss_pred ceEEEEEeCCCCCceEEEEcCCcCCCCccccccCchhhhhcC
Q 007379 565 KSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLAKQA 606 (606)
Q Consensus 565 ~SeL~VlDA~~l~pvArv~LP~rVP~GFHG~fv~~~~l~~q~ 606 (606)
+|+|+||||++|+++||++||.||||||||+|++..||++|.
T Consensus 541 ~s~l~ildAK~l~~~ar~~vp~rvP~gfHG~f~~~~~~~~~~ 582 (582)
T KOG1285|consen 541 KSFLLILDAKTLEEVARVEVPTRVPYGFHGTFVSTTDLATQS 582 (582)
T ss_pred cccEEEEeccccceeeEEecCCCCCCccceeEeccccccccC
Confidence 999999999999999999999999999999999999999984
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3e-30 Score=286.31 Aligned_cols=287 Identities=22% Similarity=0.286 Sum_probs=212.6
Q ss_pred ccceeecCCCCCceEEEeecCCCCCCC-CCCCccccCCCcEEEEEEecCcEEeEeeeecchHHHHHHHcCCCcccccccc
Q 007379 145 NLPTTGKVPDCIQGVYVRNGANPLHEP-VAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGE 223 (606)
Q Consensus 145 ~l~V~G~IP~~L~Gt~~RNGPnp~~~p-~~~~H~FDGDGMvha~~~~~G~v~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~ 223 (606)
.+++.|.||.||+|+++||||+.+-.+ ...+|||||-+++|++++.||++.|++||++|+.|+......|.+..+ ++.
T Consensus 36 ~~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~~~-f~~ 114 (582)
T KOG1285|consen 36 ECTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVSGE-FAP 114 (582)
T ss_pred ccccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCcccccccceeeecc-ccc
Confidence 488999999999999999999976433 567899999999999999999999999999999999877767766433 222
Q ss_pred cCCCchhhHHHHHHhhhccCCCCCCCCCccceeeeeee-CCeEEEEEcCCccEEEEeCCCCCcccccccccCCCC-cc-c
Q 007379 224 LHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYF-NNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQL-KS-T 300 (606)
Q Consensus 224 l~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANt~vv~~-~grLlAl~E~~~Py~vdi~p~~tLeTlG~~df~g~l-~~-~ 300 (606)
..+.+.. ..+-+.|.+.-..+....+++||.++... +++|||.+|. |+.++|++ +||+|+..++|.+.+ .. .
T Consensus 115 ~~~~pd~--~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet--~~~~ki~~-~tl~t~~~~~~~k~~v~~~~ 189 (582)
T KOG1285|consen 115 VAEFPDP--CKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTET--PHAVKIDP-GTLETTYKVRFTKTLVQEHT 189 (582)
T ss_pred cCCCCCc--cCcceeeeeeecccccccccCCCcceeecCCCeeEecCCC--ceeEEecC-cccceeEeeccccceeeeee
Confidence 2211110 11112222222233445689999999999 8899999998 89999988 999999999999943 33 6
Q ss_pred cccCceecCCCCeEEE-EEee-ecc--cCcEEEEEECCCCCcc---cc-----EE--e---eCCCcccccccccCCCeEE
Q 007379 301 MIAHPKVDPVTGDLFA-LSYD-VVK--KPYLKYFRFSPQGIKS---PD-----VE--I---PLEEPTMMHDFAITENFVV 363 (606)
Q Consensus 301 ~tAHPk~Dp~TGel~~-~~y~-~~~--~p~l~~~~~d~~G~~~---~~-----~~--i---~l~~p~~~HDFaiTenyvV 363 (606)
++|||+.|+. |++++ +|.. +.. ...++.....+.|... .. .. + .++.|.|||+||+||||+|
T Consensus 190 ~gah~~~d~~-G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~ 268 (582)
T KOG1285|consen 190 AGAHPHPDEI-GTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIG 268 (582)
T ss_pred cccCCcccCc-ccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEe
Confidence 8999999986 99998 5554 221 1223333443333321 11 11 1 3578999999999999999
Q ss_pred EeccCeeechhhhhc-------C---CCceeecCCCceEEEEEECCCCCCCCcEEEeCCCceeeeccccccCCCCCeEEE
Q 007379 364 VPDQQVVFKLKEMIR-------G---GSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVV 433 (606)
Q Consensus 364 f~d~p~~~~~~~m~~-------g---~~~~~~d~~~~tr~gVipR~~~d~~~vrw~e~p~~f~fH~~NA~Ee~~~~~vVv 433 (606)
++++|+.+++.+++. | ..++.|-|....++.++.+.++...+++ ..++++.||+.||||++ +.+|+
T Consensus 269 ~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~--~~~~~~t~hh~na~eed--g~vi~ 344 (582)
T KOG1285|consen 269 RFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVE--IFPSFPTFHHDNAFEED--GCVVP 344 (582)
T ss_pred EecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcce--eccCcceEEEeeeeccc--CceEE
Confidence 999999999988773 2 2356788888999999999875544443 33459999999999997 67888
Q ss_pred EEeecCCCc
Q 007379 434 IGSCMTPAD 442 (606)
Q Consensus 434 ~~~~~~~~~ 442 (606)
|.|++.+..
T Consensus 345 D~~~~~~~~ 353 (582)
T KOG1285|consen 345 DLCVYFDLS 353 (582)
T ss_pred EEEEEechh
Confidence 877776554
No 8
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.50 E-value=41 Score=36.51 Aligned_cols=230 Identities=14% Similarity=0.191 Sum_probs=119.8
Q ss_pred CccccccCceecCCCCeEEEEEeeec------ccCcEEEEEECCCCCccccEEeeCCCc------ccccccccCCCeEEE
Q 007379 297 LKSTMIAHPKVDPVTGDLFALSYDVV------KKPYLKYFRFSPQGIKSPDVEIPLEEP------TMMHDFAITENFVVV 364 (606)
Q Consensus 297 l~~~~tAHPk~Dp~TGel~~~~y~~~------~~p~l~~~~~d~~G~~~~~~~i~l~~p------~~~HDFaiTenyvVf 364 (606)
+...+.+|.-+.|+..+++..+.-.. +.-++++ +|.. .+....+|.+|.- .+-+.|++|.+
T Consensus 33 i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~--~D~~-TL~~~~EI~iP~k~R~~~~~~~~~~~ls~d---- 105 (342)
T PF06433_consen 33 IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEI--WDTQ-TLSPTGEIEIPPKPRAQVVPYKNMFALSAD---- 105 (342)
T ss_dssp EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEE--EETT-TTEEEEEEEETTS-B--BS--GGGEEE-TT----
T ss_pred eecccCCceeECCCCCEEEEEEEEEeccccccceeEEEE--EecC-cCcccceEecCCcchheecccccceEEccC----
Confidence 33457788888888777775442111 1122332 2332 3444555666531 33445555411
Q ss_pred eccCeeechhhhhcCCCceeecCCCceEEEEEECCCCCCCCcEEEeCCCceeeeccccccCCCCCeEEEEEeecCCCcch
Q 007379 365 PDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSI 444 (606)
Q Consensus 365 ~d~p~~~~~~~m~~g~~~~~~d~~~~tr~gVipR~~~d~~~vrw~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~~~~ 444 (606)
|+-.+.|+-+.-+-+.||+-.++ ..++-+++|.|....- +.+ +. +...|.+
T Consensus 106 --------------gk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~PGC~~iyP---~~~---~~--F~~lC~D----- 156 (342)
T PF06433_consen 106 --------------GKFLYVQNFTPATSVTVVDLAAK--KVVGEIDTPGCWLIYP---SGN---RG--FSMLCGD----- 156 (342)
T ss_dssp --------------SSEEEEEEESSSEEEEEEETTTT--EEEEEEEGTSEEEEEE---EET---TE--EEEEETT-----
T ss_pred --------------CcEEEEEccCCCCeEEEEECCCC--ceeeeecCCCEEEEEe---cCC---Cc--eEEEecC-----
Confidence 22335566666799999999764 3578899999875432 222 23 2245653
Q ss_pred hhhchhccccceeeEEEeCCCCCeee--eeecccCCcccccCcccCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCc
Q 007379 445 FNECDESLKSVLSEIRLNLKTGESTR--RPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQ 522 (606)
Q Consensus 445 ~~~~~~~l~~~l~r~rldl~tG~~~~--~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~ 522 (606)
+.|..++||- .|+.++ ..+.. ..-|-.-.++.|.+...+|.|... + .-+.-+|+....
T Consensus 157 ---------Gsl~~v~Ld~-~Gk~~~~~t~~F~----~~~dp~f~~~~~~~~~~~~~F~Sy-~-----G~v~~~dlsg~~ 216 (342)
T PF06433_consen 157 ---------GSLLTVTLDA-DGKEAQKSTKVFD----PDDDPLFEHPAYSRDGGRLYFVSY-E-----GNVYSADLSGDS 216 (342)
T ss_dssp ---------SCEEEEEETS-TSSEEEEEEEESS----TTTS-B-S--EEETTTTEEEEEBT-T-----SEEEEEEETTSS
T ss_pred ---------CceEEEEECC-CCCEeEeeccccC----CCCcccccccceECCCCeEEEEec-C-----CEEEEEeccCCc
Confidence 3456677773 455442 23332 112323345567777888888543 2 135556665544
Q ss_pred e---EEEEcC------CCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCC-----ceEEEEEeCCCCCceEEEEcCCc
Q 007379 523 V---NKFIYG------DQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEW-----KSELQIVNAMTLELEATVKLPSR 587 (606)
Q Consensus 523 ~---~~~~~g------~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~-----~SeL~VlDA~~l~pvArv~LP~r 587 (606)
+ +.|+.- +|+.+|-=.-+ +-....|-|.+++|....+ .+|+||+|.++=+-|+|+.|++.
T Consensus 217 ~~~~~~~~~~t~~e~~~~WrPGG~Q~~-----A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~ 290 (342)
T PF06433_consen 217 AKFGKPWSLLTDAEKADGWRPGGWQLI-----AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP 290 (342)
T ss_dssp EEEEEEEESS-HHHHHTTEEE-SSS-E-----EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE
T ss_pred ccccCcccccCccccccCcCCcceeee-----eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc
Confidence 2 234321 12221111101 1123446677777865433 37999999999999999999754
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.26 E-value=45 Score=35.61 Aligned_cols=99 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred CCeEEEEEcCC----ccEEEEeCCC-CCcccccccccCCCCccccccCceecCCCCeEEEEEeeecccCcEEEEEECCCC
Q 007379 262 NNRLLAMSEDD----LPYHVRVTPS-GELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQG 336 (606)
Q Consensus 262 ~grLlAl~E~~----~Py~vdi~p~-~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p~l~~~~~d~~G 336 (606)
+.+||+..|.+ .=..++++++ ++|+-+++..-.|. -..|=.+||....|+.-+|. ...+.+|.++.+|
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~----~p~~i~~~~~g~~l~vany~---~g~v~v~~l~~~g 120 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS----SPCHIAVDPDGRFLYVANYG---GGSVSVFPLDDDG 120 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS----CEEEEEECTTSSEEEEEETT---TTEEEEEEECTTS
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC----CcEEEEEecCCCEEEEEEcc---CCeEEEEEccCCc
Confidence 57799999963 2334455565 78888887665443 34577789988778888776 3558999999999
Q ss_pred CccccEE-eeC---------CCcccccccccCC--CeEEEecc
Q 007379 337 IKSPDVE-IPL---------EEPTMMHDFAITE--NFVVVPDQ 367 (606)
Q Consensus 337 ~~~~~~~-i~l---------~~p~~~HDFaiTe--nyvVf~d~ 367 (606)
.+..... +.. ......|...+++ +|+++++.
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl 163 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL 163 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence 8765432 211 2357789988884 48877653
No 10
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=86.10 E-value=55 Score=35.46 Aligned_cols=268 Identities=18% Similarity=0.234 Sum_probs=141.9
Q ss_pred CCeEEEEEcCCc-----cEEEEeCCC-CCcccccccccCCCCccccccCceecCCCCeEEEEEeeecccCcEEEEEECCC
Q 007379 262 NNRLLAMSEDDL-----PYHVRVTPS-GELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQ 335 (606)
Q Consensus 262 ~grLlAl~E~~~-----Py~vdi~p~-~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p~l~~~~~d~~ 335 (606)
..+||+.-|.|. .|++| ++ |.|+-+++....|.-+ .|=-+|+..--+|.-+|.. ..+.++.+.++
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD--~~~G~Lt~ln~~~~~g~~p----~yvsvd~~g~~vf~AnY~~---g~v~v~p~~~d 121 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRID--PDDGRLTFLNRQTLPGSPP----CYVSVDEDGRFVFVANYHS---GSVSVYPLQAD 121 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEc--CCCCeEEEeeccccCCCCC----eEEEECCCCCEEEEEEccC---ceEEEEEcccC
Confidence 456998877622 46665 53 8999998877665432 6777888744577777874 45889999999
Q ss_pred CCccccEEe-eCCC--------cccccc--cccCCCeEEEeccCeeechhhhhcCCCceeecCCCceEEEEEECCCCCCC
Q 007379 336 GIKSPDVEI-PLEE--------PTMMHD--FAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDAS 404 (606)
Q Consensus 336 G~~~~~~~i-~l~~--------p~~~HD--FaiTenyvVf~d~p~~~~~~~m~~g~~~~~~d~~~~tr~gVipR~~~d~~ 404 (606)
|.+...+.+ .-.. .+-.|. |--+.+|++.+|.-.. + .+.|+=+ -|.+.+.. ..
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D----r------i~~y~~~----dg~L~~~~--~~ 185 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD----R------IFLYDLD----DGKLTPAD--PA 185 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc----e------EEEEEcc----cCcccccc--cc
Confidence 988765333 2111 122444 4444567777764321 0 1112111 11111110 00
Q ss_pred CcEEEeCCCceeeeccccccCCCCCeEEEEEeecCCCcchhhhchhccccceeeEEEeCCCCCeeeeeecccCCcccccC
Q 007379 405 KMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEA 484 (606)
Q Consensus 405 ~vrw~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~~~~~~~~~~~l~~~l~r~rldl~tG~~~~~~l~~~~~~~~~Ef 484 (606)
.++-=.-|-..+||- ++++.- ++ ..|.+.+.-|..|...|+.++-+.++ ..+-+|
T Consensus 186 ~v~~G~GPRHi~FHp--------n~k~aY---~v-----------~EL~stV~v~~y~~~~g~~~~lQ~i~---tlP~dF 240 (346)
T COG2706 186 EVKPGAGPRHIVFHP--------NGKYAY---LV-----------NELNSTVDVLEYNPAVGKFEELQTID---TLPEDF 240 (346)
T ss_pred ccCCCCCcceEEEcC--------CCcEEE---EE-----------eccCCEEEEEEEcCCCceEEEeeeec---cCcccc
Confidence 010001133566661 234221 11 22345566667777777776544332 233345
Q ss_pred cccCCc---cCCCCCceEEEeccCCCCCcCcEEEEeccCCce--EEEEcCCCccCCCcEeeeCCCC---CCCCCCcEEEE
Q 007379 485 GMVNRN---LLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQV--NKFIYGDQRYGGEPLFFPRDPN---SENEDDGYILA 556 (606)
Q Consensus 485 P~In~~---~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~--~~~~~g~g~~~gEPvFVPr~p~---~~~EDDGyLLs 556 (606)
.--++. .+-...||.|.+-.. ...-.+.++|-.+|.. ..++--.|.+|-.=-|-|.. . ++.|+..=|..
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg--~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~v 317 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRG--HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITV 317 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCC--CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEE
Confidence 444442 344568999976422 1234678889888863 23444455554333333331 1 23445444666
Q ss_pred EEEeCCCCceEEEEEeCCCCCceEEE
Q 007379 557 FVHDEKEWKSELQIVNAMTLELEATV 582 (606)
Q Consensus 557 ~V~d~~~~~SeL~VlDA~~l~pvArv 582 (606)
|-.|.++++=-++--|+.--+|||.+
T Consensus 318 f~~d~~TG~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 318 FERDKETGRLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred EEEcCCCceEEecccccCCCCcEEEE
Confidence 77777777665555555555677765
No 11
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=73.45 E-value=21 Score=38.91 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=47.6
Q ss_pred CCCCCceEEEeccCCCCCcCcEEEEeccCCceE-EEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEE
Q 007379 492 LGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVN-KFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQI 570 (606)
Q Consensus 492 ~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~-~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~V 570 (606)
.....||+|.+..+ ..|.++|+.++++. ... .+.+|.=|.=. .|+-||++.-+.+ ..+.|
T Consensus 44 ~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~-----~G~~~~~i~~s-----~DG~~~~v~n~~~----~~v~v 104 (369)
T PF02239_consen 44 FSPDGRYLYVANRD-----GTVSVIDLATGKVVATIK-----VGGNPRGIAVS-----PDGKYVYVANYEP----GTVSV 104 (369)
T ss_dssp -TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE------SSEEEEEEE-------TTTEEEEEEEET----TEEEE
T ss_pred ecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEe-----cCCCcceEEEc-----CCCCEEEEEecCC----CceeE
Confidence 34568999987643 37999999999854 332 23455444432 3556887776643 48999
Q ss_pred EeCCCCCceEEEEcC
Q 007379 571 VNAMTLELEATVKLP 585 (606)
Q Consensus 571 lDA~~l~pvArv~LP 585 (606)
+|+++|+++.++...
T Consensus 105 ~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 105 IDAETLEPVKTIPTG 119 (369)
T ss_dssp EETTT--EEEEEE--
T ss_pred eccccccceeecccc
Confidence 999999999888764
No 12
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=38.19 E-value=5.7e+02 Score=27.94 Aligned_cols=75 Identities=15% Similarity=0.078 Sum_probs=42.7
Q ss_pred ceeeEEEeCCCCCeeeeeecccCCcccccCcccCCccC-CCCCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCcc
Q 007379 455 VLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLL-GRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRY 533 (606)
Q Consensus 455 ~l~r~rldl~tG~~~~~~l~~~~~~~~~EfP~In~~~~-Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~ 533 (606)
.+.-++||..+|+.+-....+ ...-+|| .|. -.-.||.+.+.-+... --+.++|-+||+... .+....
T Consensus 267 sI~~f~V~~~~g~L~~~~~~~----teg~~PR---~F~i~~~g~~Liaa~q~sd~--i~vf~~d~~TG~L~~--~~~~~~ 335 (346)
T COG2706 267 SIAVFSVDPDGGKLELVGITP----TEGQFPR---DFNINPSGRFLIAANQKSDN--ITVFERDKETGRLTL--LGRYAV 335 (346)
T ss_pred eEEEEEEcCCCCEEEEEEEec----cCCcCCc---cceeCCCCCEEEEEccCCCc--EEEEEEcCCCceEEe--cccccC
Confidence 577889999988743222221 1112222 222 2346788876544211 247788999998764 234456
Q ss_pred CCCcEee
Q 007379 534 GGEPLFF 540 (606)
Q Consensus 534 ~gEPvFV 540 (606)
+.||+-|
T Consensus 336 ~p~Pvcv 342 (346)
T COG2706 336 VPEPVCV 342 (346)
T ss_pred CCCcEEE
Confidence 6777754
No 13
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=34.06 E-value=64 Score=35.19 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=44.3
Q ss_pred CCceEEEec-cCCCCCcCcEEEEeccCCceEE-EEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEe
Q 007379 495 KTRFAYLAL-AEPWPKVSGFAKVDLLTGQVNK-FIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVN 572 (606)
Q Consensus 495 ~~Ry~Y~~~-~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlD 572 (606)
..||+|... ..+ ..+.|.-+|.++.++.. ...++|.- ++.+-= .+|.-+|...+.|.+. +|+|+|
T Consensus 279 ~s~~vwvd~~~~~--~~~~v~viD~~tl~~~~~i~~~~~~~---~~h~ef-----~~dG~~v~vS~~~~~~---~i~v~D 345 (369)
T PF02239_consen 279 DSRYVWVDTFLNP--DADTVQVIDKKTLKVVKTITPGPGKR---VVHMEF-----NPDGKEVWVSVWDGNG---AIVVYD 345 (369)
T ss_dssp T-SEEEEE-TT-S--SHT-EEEEECCGTEEEE-HHHHHT-----EEEEEE------TTSSEEEEEEE--TT---EEEEEE
T ss_pred CCccEEeeccCCC--CCceEEEEECcCcceeEEEeccCCCc---EeccEE-----CCCCCEEEEEEecCCC---EEEEEE
Confidence 467999762 222 35789999999986532 22222211 222221 1233455556666443 999999
Q ss_pred CCCCCceEEEEcCC
Q 007379 573 AMTLELEATVKLPS 586 (606)
Q Consensus 573 A~~l~pvArv~LP~ 586 (606)
++++++++++.++.
T Consensus 346 ~~Tl~~~~~i~~~t 359 (369)
T PF02239_consen 346 AKTLKEKKRIPVPT 359 (369)
T ss_dssp TTTTEEEEEEE--S
T ss_pred CCCcEEEEEEEeeC
Confidence 99999999999653
No 14
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.55 E-value=35 Score=34.74 Aligned_cols=36 Identities=14% Similarity=0.508 Sum_probs=28.5
Q ss_pred eeeeCCeEEEE-EcCCccEEEEeCCCCCcccccccccCCC
Q 007379 258 LVYFNNRLLAM-SEDDLPYHVRVTPSGELKTVGRFDFSGQ 296 (606)
Q Consensus 258 vv~~~grLlAl-~E~~~Py~vdi~p~~tLeTlG~~df~g~ 296 (606)
+..+++..|+| |..|..|..| + .|||++|++.|.|+
T Consensus 96 it~~gd~~y~LTw~egvaf~~d--~-~t~~~lg~~~y~Ge 132 (262)
T COG3823 96 ITKLGDYFYQLTWKEGVAFKYD--A-DTLEELGRFSYEGE 132 (262)
T ss_pred eeeccceEEEEEeccceeEEEC--h-HHhhhhcccccCCc
Confidence 45567788886 6777777766 6 89999999999864
No 15
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=27.98 E-value=1.1e+02 Score=21.36 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCceEEEEcCCcCCCCc
Q 007379 564 WKSELQIVNAMTLELEATVKLPSRVPYGF 592 (606)
Q Consensus 564 ~~SeL~VlDA~~l~pvArv~LP~rVP~GF 592 (606)
+...|.|+|+.+.+.+.++.+ ..-|.++
T Consensus 12 ~~~~v~~id~~~~~~~~~i~v-g~~P~~i 39 (42)
T TIGR02276 12 GSNTVSVIDTATNKVIATIPV-GGYPFGV 39 (42)
T ss_pred CCCEEEEEECCCCeEEEEEEC-CCCCceE
Confidence 345888999999999999998 4666654
No 16
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=26.91 E-value=1.8e+02 Score=28.26 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=41.4
Q ss_pred CcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCceEEEEcCCc
Q 007379 511 SGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSR 587 (606)
Q Consensus 511 ~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP~r 587 (606)
..|..+|+.+|+. .|.+.-+.-.+.++..+- -++|+|++. +....|..+|+.+-+.+.+..++..
T Consensus 3 g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~------~~~~~v~~~-----~~~~~l~~~d~~tG~~~W~~~~~~~ 67 (238)
T PF13360_consen 3 GTLSALDPRTGKE-LWSYDLGPGIGGPVATAV------PDGGRVYVA-----SGDGNLYALDAKTGKVLWRFDLPGP 67 (238)
T ss_dssp SEEEEEETTTTEE-EEEEECSSSCSSEEETEE------EETTEEEEE-----ETTSEEEEEETTTSEEEEEEECSSC
T ss_pred CEEEEEECCCCCE-EEEEECCCCCCCccceEE------EeCCEEEEE-----cCCCEEEEEECCCCCEEEEeecccc
Confidence 3588999999985 344432111222231121 145666665 3667999999999999999998654
No 17
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.40 E-value=9.1e+02 Score=26.36 Aligned_cols=244 Identities=15% Similarity=0.244 Sum_probs=120.6
Q ss_pred CccEEEEeCCCCCcccccccccCCCCccccccCceecCCCCeEEEEEeeec------ccCcEEEEEECC-CCCccccEEe
Q 007379 272 DLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVV------KKPYLKYFRFSP-QGIKSPDVEI 344 (606)
Q Consensus 272 ~~Py~vdi~p~~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~------~~p~l~~~~~d~-~G~~~~~~~i 344 (606)
+.=|.|| . .+++.+|..+-+ + ..|..+.|+.+++|....-.. ..-.+ -.+|. .++...+.++
T Consensus 27 ~~v~ViD--~-~~~~v~g~i~~G-~-----~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V--~v~D~~t~~~~~~i~~ 95 (352)
T TIGR02658 27 TQVYTID--G-EAGRVLGMTDGG-F-----LPNPVVASDGSFFAHASTVYSRIARGKRTDYV--EVIDPQTHLPIADIEL 95 (352)
T ss_pred ceEEEEE--C-CCCEEEEEEEcc-C-----CCceeECCCCCEEEEEeccccccccCCCCCEE--EEEECccCcEEeEEcc
Confidence 4456766 4 678888776643 2 334456777667765442100 01122 22332 2222222222
Q ss_pred eCCC-----cccccccccCCCeEEEeccCeeechhhhhcCCCceeecCCCceEEEEEECCCCCCCCcEEEeCCCceeeec
Q 007379 345 PLEE-----PTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHL 419 (606)
Q Consensus 345 ~l~~-----p~~~HDFaiTenyvVf~d~p~~~~~~~m~~g~~~~~~d~~~~tr~gVipR~~~d~~~vrw~e~p~~f~fH~ 419 (606)
+ +. ..+-+.|+++.+ |...+.++.+....+.||+-.++ ..++-+++|. |.|.
T Consensus 96 p-~~p~~~~~~~~~~~~ls~d------------------gk~l~V~n~~p~~~V~VvD~~~~--kvv~ei~vp~--~~~v 152 (352)
T TIGR02658 96 P-EGPRFLVGTYPWMTSLTPD------------------NKTLLFYQFSPSPAVGVVDLEGK--AFVRMMDVPD--CYHI 152 (352)
T ss_pred C-CCchhhccCccceEEECCC------------------CCEEEEecCCCCCEEEEEECCCC--cEEEEEeCCC--CcEE
Confidence 2 12 234445555433 33345566666789999999753 4667788886 4455
Q ss_pred cccccCCCCCeEEEEEeecCCCcchhhhchhccccceeeEEEeCCCCCeee--eeecccCCcccccCcccCCccCCCCCc
Q 007379 420 WNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTR--RPIISEDEQVNLEAGMVNRNLLGRKTR 497 (606)
Q Consensus 420 ~NA~Ee~~~~~vVv~~~~~~~~~~~~~~~~~~l~~~l~r~rldl~tG~~~~--~~l~~~~~~~~~EfP~In~~~~Gr~~R 497 (606)
..+=|+. ..+ .|.+ ..+..++++- +|++.. .++...+.+.-.+-| .|.-+..+
T Consensus 153 y~t~e~~---~~~---~~~D--------------g~~~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~ 207 (352)
T TIGR02658 153 FPTANDT---FFM---HCRD--------------GSLAKVGYGT-KGNPKIKPTEVFHPEDEYLINHP----AYSNKSGR 207 (352)
T ss_pred EEecCCc---cEE---Eeec--------------CceEEEEecC-CCceEEeeeeeecCCccccccCC----ceEcCCCc
Confidence 5544432 222 2221 2234455542 344321 122211111111222 33333457
Q ss_pred eEEEeccCCCCCcCcEEEEeccCCce---EEEE---cC---CCccCC--CcEeeeCCCCCCCCCCcEEEEEEEeCC----
Q 007379 498 FAYLALAEPWPKVSGFAKVDLLTGQV---NKFI---YG---DQRYGG--EPLFFPRDPNSENEDDGYILAFVHDEK---- 562 (606)
Q Consensus 498 y~Y~~~~~p~~~~~givK~Dl~tg~~---~~~~---~g---~g~~~g--EPvFVPr~p~~~~EDDGyLLs~V~d~~---- 562 (606)
+.|... + ..|.-+|+...++ +.|. ++ +|.-++ || +.- .-|.+.|.+..|...
T Consensus 208 ~~~vs~-e-----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~-----~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 208 LVWPTY-T-----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAY-----HRARDRIYLLADQRAKWTH 274 (352)
T ss_pred EEEEec-C-----CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEE-----cCCCCEEEEEecCCccccc
Confidence 777543 2 4577778655432 1222 11 122221 33 221 235566666566433
Q ss_pred -CCceEEEEEeCCCCCceEEEEcCCc
Q 007379 563 -EWKSELQIVNAMTLELEATVKLPSR 587 (606)
Q Consensus 563 -~~~SeL~VlDA~~l~pvArv~LP~r 587 (606)
....++.|+|+++.+.++++.+-.+
T Consensus 275 k~~~~~V~ViD~~t~kvi~~i~vG~~ 300 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKRLRKIELGHE 300 (352)
T ss_pred cCCCCEEEEEECCCCeEEEEEeCCCc
Confidence 2336999999999999999998653
No 18
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=24.70 E-value=3.9e+02 Score=26.35 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=46.8
Q ss_pred CCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCC
Q 007379 495 KTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAM 574 (606)
Q Consensus 495 ~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~ 574 (606)
..++.|.+.... +.|..+|+.+++...... .+..+....|-|. ..+|++... ....|.|+|..
T Consensus 217 dg~~~~~~~~~~----~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~--------g~~l~~~~~----~~~~i~v~d~~ 279 (300)
T TIGR03866 217 DGKTAFVALGPA----NRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD--------EKYLLTTNG----VSNDVSVIDVA 279 (300)
T ss_pred CCCEEEEEcCCC----CeEEEEECCCCcEEEEEE-eCCCcceEEECCC--------CCEEEEEcC----CCCeEEEEECC
Confidence 345667654331 468889999988654322 2222222334332 224443322 23479999999
Q ss_pred CCCceEEEEcCCcCCCCc
Q 007379 575 TLELEATVKLPSRVPYGF 592 (606)
Q Consensus 575 ~l~pvArv~LP~rVP~GF 592 (606)
+.+.+.++++. .=|+|+
T Consensus 280 ~~~~~~~~~~~-~~~~~~ 296 (300)
T TIGR03866 280 ALKVIKSIKVG-RLPWGV 296 (300)
T ss_pred CCcEEEEEEcc-ccccee
Confidence 99999999885 445543
No 19
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=24.28 E-value=7.5e+02 Score=25.63 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=50.4
Q ss_pred eEEEEEc-CCccEEEEeCCCCCcccccccccCCCCccccccCceecCCCCeEEEEEeeecccCcEEEEEECCCCCccccE
Q 007379 264 RLLAMSE-DDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDV 342 (606)
Q Consensus 264 rLlAl~E-~~~Py~vdi~p~~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p~l~~~~~d~~G~~~~~~ 342 (606)
.||+..+ .+.-+.++++.++.|+.++.....+. ..|=.+||+...+|.-+|. ...+.+|.++.+|......
T Consensus 48 ~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~-----p~~i~~~~~g~~l~v~~~~---~~~v~v~~~~~~g~~~~~~ 119 (330)
T PRK11028 48 HLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS-----PTHISTDHQGRFLFSASYN---ANCVSVSPLDKDGIPVAPI 119 (330)
T ss_pred EEEEEECCCCcEEEEEECCCCceEEeeeecCCCC-----ceEEEECCCCCEEEEEEcC---CCeEEEEEECCCCCCCCce
Confidence 4566544 33344455554466665554433221 2244467776667776664 3567888888888653322
Q ss_pred EeeCCCcccccccccCCC--eEEEe
Q 007379 343 EIPLEEPTMMHDFAITEN--FVVVP 365 (606)
Q Consensus 343 ~i~l~~p~~~HDFaiTen--yvVf~ 365 (606)
. .++.....|..+++.+ |+++.
T Consensus 120 ~-~~~~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 120 Q-IIEGLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred e-eccCCCcccEeEeCCCCCEEEEe
Confidence 1 1223345677777643 65543
No 20
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=24.19 E-value=3.2e+02 Score=29.88 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=46.4
Q ss_pred ceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEE--EEEEeC---CCCceEEEEE
Q 007379 497 RFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYIL--AFVHDE---KEWKSELQIV 571 (606)
Q Consensus 497 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLL--s~V~d~---~~~~SeL~Vl 571 (606)
+++|..-..-+...+.|.-+|..++++..- ..-|..+. ++..+ |...|. +..|.. .++.-.+.|+
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~-i~~G~~P~---~~~sp------Dg~~lyva~~~~~R~~~G~~~d~V~v~ 82 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGM-TDGGFLPN---PVVAS------DGSFFAHASTVYSRIARGKRTDYVEVI 82 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEE-EEccCCCc---eeECC------CCCEEEEEeccccccccCCCCCEEEEE
Confidence 347754332223337899999999987543 22343322 22221 222232 222211 1133479999
Q ss_pred eCCCCCceEEEEcCCc
Q 007379 572 NAMTLELEATVKLPSR 587 (606)
Q Consensus 572 DA~~l~pvArv~LP~r 587 (606)
|++++++++++.+|-.
T Consensus 83 D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 83 DPQTHLPIADIELPEG 98 (352)
T ss_pred ECccCcEEeEEccCCC
Confidence 9999999999999843
No 21
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=22.22 E-value=5.2e+02 Score=27.37 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=62.3
Q ss_pred ccccCcccCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCC-C----------ccCCCcEeeeCCCCCCC
Q 007379 480 VNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGD-Q----------RYGGEPLFFPRDPNSEN 548 (606)
Q Consensus 480 ~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~-g----------~~~gEPvFVPr~p~~~~ 548 (606)
.+-++..||-=-.-.+.. |+++.+. .+.|+++|-.||++..+.-|+ + ++.--|-|++..
T Consensus 139 ~~~D~~HiNsV~~~~~G~--yLiS~R~---~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~----- 208 (299)
T PF14269_consen 139 FPWDYFHINSVDKDDDGD--YLISSRN---TSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNES----- 208 (299)
T ss_pred CCCCccEeeeeeecCCcc--EEEEecc---cCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccC-----
Confidence 345666666532223333 4555543 478999999999986443344 1 123445555542
Q ss_pred CCCcEEEEEEE------eCCCCceEEEEEeCCCCC--ceEEEEcCCcCCCCccccccCchh
Q 007379 549 EDDGYILAFVH------DEKEWKSELQIVNAMTLE--LEATVKLPSRVPYGFHGTFIGAKD 601 (606)
Q Consensus 549 EDDGyLLs~V~------d~~~~~SeL~VlDA~~l~--pvArv~LP~rVP~GFHG~fv~~~~ 601 (606)
+++|.|+.|=. .....++.++-||..+++ .+.+.. .-|.+|+..+....|
T Consensus 209 ~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~---~~~~~~~s~~~G~~Q 266 (299)
T PF14269_consen 209 NDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS---DHPDGFYSPSQGSAQ 266 (299)
T ss_pred CCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee---cCCCcccccCCCcce
Confidence 57787765533 122356799999999765 233333 146666666655444
No 22
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=20.01 E-value=66 Score=23.86 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=22.6
Q ss_pred EeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCC
Q 007379 538 LFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAM 574 (606)
Q Consensus 538 vFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~ 574 (606)
++||.+ .+||+++-|.+...++-.+...|.+
T Consensus 4 vWvpD~------~egfv~g~I~~~~g~~vtV~~~~G~ 34 (42)
T PF02736_consen 4 VWVPDP------KEGFVKGEIIEEEGDKVTVKTEDGK 34 (42)
T ss_dssp EEEEES------SSSEEEEEEEEEESSEEEEEETTTE
T ss_pred EEEeCC------cccEEEEEEEEEcCCEEEEEECCCC
Confidence 788874 5699999999876666666655543
Done!