Query 007379
Match_columns 606
No_of_seqs 248 out of 1081
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 00:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 2E-143 7E-148 1195.6 52.3 517 89-606 5-528 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 8E-118 3E-122 983.5 47.0 444 130-599 20-490 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 3E-112 1E-116 947.9 40.9 450 129-599 11-533 (533)
4 1qks_A Cytochrome CD1 nitrite 60.5 85 0.0029 34.5 13.6 77 495-585 207-285 (567)
5 3mbr_X Glutamine cyclotransfer 58.8 24 0.00082 34.9 7.9 27 497-525 31-57 (243)
6 3mbr_X Glutamine cyclotransfer 58.7 59 0.002 32.0 10.7 95 460-585 47-143 (243)
7 2mad_H Methylamine dehydrogena 53.2 2E+02 0.0068 29.3 25.2 38 549-586 276-318 (373)
8 4guc_A Protein BA_2500; virule 51.6 30 0.001 30.6 6.2 47 310-364 35-87 (120)
9 3nol_A Glutamine cyclotransfer 47.7 42 0.0014 33.5 7.6 26 498-525 54-79 (262)
10 3hfq_A Uncharacterized protein 46.1 2.1E+02 0.0073 27.6 24.2 76 262-345 50-128 (347)
11 2iwa_A Glutamine cyclotransfer 45.7 1.2E+02 0.0043 29.9 10.8 97 459-585 47-145 (266)
12 3nol_A Glutamine cyclotransfer 43.4 1E+02 0.0036 30.7 9.7 95 460-585 69-165 (262)
13 1fwx_A Nitrous oxide reductase 42.2 34 0.0012 38.3 6.5 100 482-592 85-200 (595)
14 1jof_A Carboxy-CIS,CIS-muconat 42.1 2.6E+02 0.009 27.5 26.7 87 494-587 264-355 (365)
15 2iwa_A Glutamine cyclotransfer 39.8 73 0.0025 31.6 8.0 78 497-592 32-110 (266)
16 3c75_H MADH, methylamine dehyd 39.3 91 0.0031 33.1 9.1 80 496-585 84-168 (426)
17 3nok_A Glutaminyl cyclase; bet 37.0 1.3E+02 0.0045 30.1 9.3 95 460-586 79-175 (268)
18 3c75_H MADH, methylamine dehyd 36.6 1.1E+02 0.0039 32.3 9.3 110 459-586 102-220 (426)
19 1mda_H Methylamine dehydrogena 35.6 2E+02 0.007 29.6 11.0 79 497-585 32-115 (368)
20 2mad_H Methylamine dehydrogena 32.3 2E+02 0.007 29.2 10.3 80 496-585 32-116 (373)
21 3sjl_D Methylamine dehydrogena 31.9 4.6E+02 0.016 27.3 23.0 258 262-588 44-333 (386)
22 3nok_A Glutaminyl cyclase; bet 31.4 1.3E+02 0.0044 30.1 8.2 71 497-585 65-135 (268)
23 3u4y_A Uncharacterized protein 21.2 5.2E+02 0.018 24.3 11.8 76 495-585 50-127 (331)
24 1fzc_A Fibrin; blood coagulati 20.6 18 0.0006 30.1 -0.5 12 11-22 46-57 (87)
25 3dsm_A Uncharacterized protein 20.5 5.9E+02 0.02 24.7 10.9 78 495-585 139-222 (328)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=2e-143 Score=1195.60 Aligned_cols=517 Identities=70% Similarity=1.185 Sum_probs=488.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhcc--cccCCCCCCCCCccccccCCccCCCCCCCcccceeecCCCCCceEEEeecCC
Q 007379 89 APSKWNFLQKAAALALDAVENALVSQ--ERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGAN 166 (606)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~l~gnfapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGPn 166 (606)
..++|||+|++|+++||++|+.|+++ +.++|||+++||+++++|||+||+||++..+|+|+|+||+||+|+|||||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpn 84 (529)
T 3npe_A 5 GKKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGAN 84 (529)
T ss_dssp ---CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBC
T ss_pred CcCCCChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCC
Confidence 45689999999999999999999997 6789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCcEEEEEEecCcE-EeEeeeecchHHHHHHHcCCCcccccccccCCCchhhHHHHHHhhhccCCC
Q 007379 167 PLHEPVAGHHFFDGDGMVHAVKFNKGSV-SYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLV 245 (606)
Q Consensus 167 p~~~p~~~~H~FDGDGMvha~~~~~G~v-~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~l~g~~g~ar~~~~~~r~~~g~~ 245 (606)
|+|++..++||||||||||+|+|++|+| +|+||||||++|++|+++||++||+++|+++|+++++|..+++.|..+|++
T Consensus 85 P~f~~~~~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (529)
T 3npe_A 85 PCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLV 164 (529)
T ss_dssp CSSCCSSCCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSC
T ss_pred cCcCCcCCCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccc
Confidence 9998888899999999999999999999 999999999999999999999999999999999999999888888888887
Q ss_pred CCCCCCccceeeeeeeCCeEEEEEcCCccEEEEeCCCCCcccccccccCCCCccccccCceecCCCCeEEEEEeeecccC
Q 007379 246 DPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKP 325 (606)
Q Consensus 246 ~~~~~~~~ANt~vv~~~grLlAl~E~~~Py~vdi~p~~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p 325 (606)
+...++++|||||++|+||||||||+|+||+++|||++||||+|++||+|+|.++||||||+||+||||++|+|++.++|
T Consensus 165 ~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p 244 (529)
T 3npe_A 165 DPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRP 244 (529)
T ss_dssp CGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSC
T ss_pred cccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCC
Confidence 76667899999999999999999999999999999866999999999999999999999999999999999999988889
Q ss_pred cEEEEEECCCCCccccEEeeCCCcccccccccCCCeEEEeccCeeechhhhhcCCCceeecCCCceEEEEEECCCCCCCC
Q 007379 326 YLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASK 405 (606)
Q Consensus 326 ~l~~~~~d~~G~~~~~~~i~l~~p~~~HDFaiTenyvVf~d~p~~~~~~~m~~g~~~~~~d~~~~tr~gVipR~~~d~~~ 405 (606)
+++||+++++|++.+.++|+++.|+|||||||||||+||+++|+++|+.+|+.|++++.|+|++++|||||||++++.+.
T Consensus 245 ~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~g~~~~~~~p~~~tr~~VipR~~~~~~~ 324 (529)
T 3npe_A 245 YLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASE 324 (529)
T ss_dssp CCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTTTCCSEEECTTSCCEEEEEETTCSSGGG
T ss_pred cEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhCCCCceEECCCCCcEEEEEECCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877778
Q ss_pred cEEEeCCCceeeeccccccCCCCCeEEEEEeecCCCcchhhhchhccccceeeEEEeCCCCCeeeeeecccCCcccccCc
Q 007379 406 MKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAG 485 (606)
Q Consensus 406 vrw~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~~~~~~~~~~~l~~~l~r~rldl~tG~~~~~~l~~~~~~~~~EfP 485 (606)
||||++|+||+||++|||||+++|+|||++||+.+.+.+++...+++++.|+|||||+++|+++++.+.++..+.++|||
T Consensus 325 vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP 404 (529)
T 3npe_A 325 MAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVG 404 (529)
T ss_dssp CEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEE
T ss_pred eEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccccCccccCc
Confidence 99999999999999999998655789999999988888887666778899999999999999999888754445889999
Q ss_pred ccCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCC----CCCCCCcEEEEEEEeC
Q 007379 486 MVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPN----SENEDDGYILAFVHDE 561 (606)
Q Consensus 486 ~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~----~~~EDDGyLLs~V~d~ 561 (606)
+||++|.||+|||+|+++.++++++++|+|+|++||++++|++|+|+|+|||+||||+ + +++|||||||++|+|+
T Consensus 405 ~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~~~~~~g~~~~~~EPvFVPrp-~~~~~~~~EDDG~lLs~V~d~ 483 (529)
T 3npe_A 405 MVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMD-PAAAHPRGEDDGYVLTFVHDE 483 (529)
T ss_dssp EECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCEEEEECCTTBCCCCCEEEECC-SCSSSSCCTTCEEEEEEEEBS
T ss_pred eEChhHcCCccceEEEeccCCCCCcceEEEEecCCCceEEEEcCCCccccCCEeeeCC-CCCCCCCCCCCcEEEEEEEEC
Confidence 9999999999999999998887889999999999999999999999999999999997 6 7899999999999999
Q ss_pred CCCceEEEEEeCCCCCceEEEEcCCcCCCCccccccCchhhhhcC
Q 007379 562 KEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLAKQA 606 (606)
Q Consensus 562 ~~~~SeL~VlDA~~l~pvArv~LP~rVP~GFHG~fv~~~~l~~q~ 606 (606)
++++|+|+||||++|++||||+||+||||||||+|++++||++|+
T Consensus 484 ~~~~S~LlILDA~~l~~vArv~LP~rvP~GfHG~wv~~~~l~~q~ 528 (529)
T 3npe_A 484 RAGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA 528 (529)
T ss_dssp SCCCEEEEEEETTTTEEEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred CCCcEEEEEEeCCCCccceEEECCCCCCCCccccccCHHHhhhhh
Confidence 999999999999999999999999999999999999999999995
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=8e-118 Score=983.53 Aligned_cols=444 Identities=26% Similarity=0.451 Sum_probs=396.4
Q ss_pred cccCCccCCCCCCCcccc-eeecCCCCCceEEEeecCCCCCCC-CCCCccccCCCcEEEEEE-ecCcEEeEeeeecchHH
Q 007379 130 IAGNFSPVPEKPVCQNLP-TTGKVPDCIQGVYVRNGANPLHEP-VAGHHFFDGDGMVHAVKF-NKGSVSYSCRFTETNRF 206 (606)
Q Consensus 130 l~gnfapv~ee~~~~~l~-V~G~IP~~L~Gt~~RNGPnp~~~p-~~~~H~FDGDGMvha~~~-~~G~v~y~~RfV~T~~~ 206 (606)
.+++|+|+.+|.+.. |. |+|+||+||+|+|||||||+++.+ ...+||||||||||+|+| ++|+|+|+||||||++|
T Consensus 20 ~~~~f~~~~~E~~~~-l~~V~G~IP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmlh~~~f~~~G~v~y~~R~v~T~~~ 98 (490)
T 2biw_A 20 WLRGYQSQPQEWDYW-VEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKFVRTQGY 98 (490)
T ss_dssp HHHTTSCCCSCEEEE-CCCEEECCCTTCCEEEEECCBCCSEETTEECSSGGGSCBEEEEEEECSSSCCEEEEEECCCHHH
T ss_pred hhhhccCccccCCcc-cceEEeCCCCCCCeEEEEeCCCcCcCCCCcccCccCCCCeEEEEEECCCCEEEEEcceEeCHHH
Confidence 468899998777654 76 999999999999999999988653 567899999999999999 99999999999999999
Q ss_pred HHHHHcCCCcccccccccCCCchhhHHHHHHhhhccCCCCCCCCCccceeeeeeeCCeEEEEEcCCccEEEEeCCCCCcc
Q 007379 207 VQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELK 286 (606)
Q Consensus 207 ~~E~~~Gr~~~~~~~g~l~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANt~vv~~~grLlAl~E~~~Py~vdi~p~~tLe 286 (606)
++|+++||++|++.+|+..+...+.+ .+++ ..+|+|||+|++|+||||||||++.||+|| | +|||
T Consensus 99 ~~e~~ag~~~~~~~fg~~~~~~~~~~--------~~~~----~~~~~aNT~v~~~~g~llAl~E~~~p~~ld--p-~tLe 163 (490)
T 2biw_A 99 VEEQKAGKMIYRGVFGSQPAGGWLKT--------IFDL----RLKNIANTNITYWGDRLLALWEGGQPHRLE--P-SNLA 163 (490)
T ss_dssp HHHHHHTSCCSBCTTSCCCSSTHHHH--------TTCC----CBCCCCCSEEEEETTEEEEECTTSCCEEEC--T-TTCC
T ss_pred HHHHHhCCcccccccccCCCCchhhh--------hccc----ccCCCCEEEEEEECCEEEEEEcCCCCEecc--c-cccc
Confidence 99999999999988888765432211 1111 147899999999999999999999999988 7 8999
Q ss_pred cccccccCCCC-cc-ccccCceecCC------CCeEEEEEeeecccCcEEEEEECCCCCccccEEeeCCCcccccccccC
Q 007379 287 TVGRFDFSGQL-KS-TMIAHPKVDPV------TGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAIT 358 (606)
Q Consensus 287 TlG~~df~g~l-~~-~~tAHPk~Dp~------TGel~~~~y~~~~~p~l~~~~~d~~G~~~~~~~i~l~~p~~~HDFaiT 358 (606)
|+|++||+|+| ++ .||||||+||+ ||||++|+|+..+.+.++||++|++|++.+.+.|+++.++||||||||
T Consensus 164 T~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfaiT 243 (490)
T 2biw_A 164 TIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAIT 243 (490)
T ss_dssp EEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEECTTSCEEEEEEEEEESCCCCCCCEEC
T ss_pred EeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEECCCCCEEeeEEEeCCCCceEeeeecc
Confidence 99999999999 65 89999999999 999999999986555699999999999999999999999999999999
Q ss_pred CCeEEEeccCeeechhhhhcCC----CceeecCCCceEEEEEECCCCCCCCcEEEeCCCceeeeccccccCCCCCeEEEE
Q 007379 359 ENFVVVPDQQVVFKLKEMIRGG----SPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVI 434 (606)
Q Consensus 359 enyvVf~d~p~~~~~~~m~~g~----~~~~~d~~~~tr~gVipR~~~d~~~vrw~e~p~~f~fH~~NA~Ee~~~~~vVv~ 434 (606)
|||+||+++|+.+++.+|+.|+ .++.|+|++++|||||||+ .+.++||++|+||+||++|||||+ |+||++
T Consensus 244 eny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~---~~~v~~f~~~~~f~fH~~NA~Ee~--~~Iv~d 318 (490)
T 2biw_A 244 PHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD---GGEIKRIPVQAGFVFHHANAFEEN--GKIILD 318 (490)
T ss_dssp SSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT---SCCCEEEEECCCEEEEEEEEEEET--TEEEEE
T ss_pred CCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC---CCccEEEecCCCeEEecccceecC--CeEEEE
Confidence 9999999999999999998753 5799999999999999998 346999999999999999999985 799999
Q ss_pred EeecCCCcch-----hhh--chhccccceeeEEEeCCCCCeeeeeecccCCcccccCcccCCccCCCCCceEEEeccC--
Q 007379 435 GSCMTPADSI-----FNE--CDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAE-- 505 (606)
Q Consensus 435 ~~~~~~~~~~-----~~~--~~~~l~~~l~r~rldl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~-- 505 (606)
.||+.+.+.+ +.. .....+++|+||||||++|+++++.|. +.++|||+||++|.||+|||+|+++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~----~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~ 394 (490)
T 2biw_A 319 SICYNSLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMV----SRCCEFPVVHPQQVGRPYRYVYMGAAHHS 394 (490)
T ss_dssp EEEESCCCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEEEEEE----CSCEEEEECCGGGTTSCCSEEEEEECSSS
T ss_pred EeccCCcccccccccccccccccCCCceEEEEEEECCCCceEEEecc----CCcccccccChhhCCceeeeEEEEeecCC
Confidence 8888754431 111 112345789999999999999988887 689999999999999999999998875
Q ss_pred -CCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCC--ceEEE
Q 007379 506 -PWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLE--LEATV 582 (606)
Q Consensus 506 -p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~--pvArv 582 (606)
+++++++|+|+|++||+.+.|.+|+|+|+|||+||||+ ++++|||||||++|+|+++++|+|+||||++|+ |||||
T Consensus 395 ~~~~~~~~l~K~D~~tg~~~~~~~g~g~~~~EPvFVPrp-~~~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~pvArv 473 (490)
T 2biw_A 395 TGNAPLQAILKVDLESGTETLRSFAPHGFAGEPIFVPRP-GGVAEDDGWLLCLIYKADLHRSELVILDAQDITAPAIATL 473 (490)
T ss_dssp SSCCCCCEEEEEETTTTEEEEEECTTTEECCCCEEEECT-TCCSTTCEEEEEEEEETTTTEEEEEEEETTCTTSCCSEEE
T ss_pred CCCCCCCeEEEEECCCCCEEEEECCCCccccCCEEecCC-CCCCCCCcEEEEEEEeCCCCceeEEEEccCCCCcCceEEE
Confidence 46678999999999999999999999999999999996 788999999999999999999999999999998 99999
Q ss_pred EcCCcCCCCccccccCc
Q 007379 583 KLPSRVPYGFHGTFIGA 599 (606)
Q Consensus 583 ~LP~rVP~GFHG~fv~~ 599 (606)
+||+||||||||+|+++
T Consensus 474 ~lP~rvP~GfHG~wv~~ 490 (490)
T 2biw_A 474 KLKHHIPYPLHGSWAQT 490 (490)
T ss_dssp ECSSCCCCCCCEEEEEC
T ss_pred eCCCcCCCCccccccCC
Confidence 99999999999999863
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=2.9e-112 Score=947.85 Aligned_cols=450 Identities=21% Similarity=0.298 Sum_probs=367.3
Q ss_pred ccccCCccCCCCCCCcccceeecCCCCCceEEEeecCCCCC-CCCCCCccccCCCcEEEEEEecCcEEeEeeeecchHHH
Q 007379 129 QIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLH-EPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFV 207 (606)
Q Consensus 129 ~l~gnfapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~-~p~~~~H~FDGDGMvha~~~~~G~v~y~~RfV~T~~~~ 207 (606)
-++++|+|+.|++++..|+|+|+||+||+|+|||||||++. ++..++||||||||||+|+|++|+|+|+||||||++|+
T Consensus 11 ~~~~~f~~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~G~v~y~~R~v~T~~~~ 90 (533)
T 3kvc_A 11 GYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYV 90 (533)
T ss_dssp GGGGGGSCCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEETTEEEEEEEECCCHHHH
T ss_pred hhhhhcCcccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeCCEEEEEEEEecCHHHH
Confidence 37899999999999989999999999999999999999873 34567999999999999999999999999999999999
Q ss_pred HHHHcCCCcccccccccCCC---ch-hhHHHHHHhhhccCCCCCCCCCccceeeeeeeCCeEEEEEcCCccEEEEeCCCC
Q 007379 208 QERSLGRPVFPKAIGELHGH---TG-IARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSG 283 (606)
Q Consensus 208 ~E~~~Gr~~~~~~~g~l~g~---~g-~ar~~~~~~r~~~g~~~~~~~~~~ANt~vv~~~grLlAl~E~~~Py~vdi~p~~ 283 (606)
+|+++||++|++ +|+.... .+ +.|.. ..+.....+++|||||++|+||||||||++.||+|| | .
T Consensus 91 ~e~~agr~~~~~-fg~~~~~~p~~~~~~~~~--------~~~~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iD--p-~ 158 (533)
T 3kvc_A 91 RAMTEKRIVITE-FGTCAFPDPCKNIFSRFF--------SYFRGVEVTDNALVNIYPVGEDYYACTETNFITKVN--P-E 158 (533)
T ss_dssp HHHHHTSCCSCB-TTBCC---------------------------CCCCCCCSEEEEETTEEEEECSSSEEEEEC--T-T
T ss_pred HHHHcCCcceec-cCcccCCcchhhHHHHHH--------HhhccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeC--h-H
Confidence 999999999875 6664311 11 11211 111111347899999999999999999999999987 8 7
Q ss_pred CcccccccccCCCCcc-ccccCceecCCCCeEEEEEeeeccc--CcEEEEEECCCCC-----ccc---cEEee---CCCc
Q 007379 284 ELKTVGRFDFSGQLKS-TMIAHPKVDPVTGDLFALSYDVVKK--PYLKYFRFSPQGI-----KSP---DVEIP---LEEP 349 (606)
Q Consensus 284 tLeTlG~~df~g~l~~-~~tAHPk~Dp~TGel~~~~y~~~~~--p~l~~~~~d~~G~-----~~~---~~~i~---l~~p 349 (606)
||||+|++||+|+|+. .||||||+|| |||||+|+|+...+ +.|.+|++++++. +.+ .++|+ ++.|
T Consensus 159 tLeT~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p 237 (533)
T 3kvc_A 159 TLETIKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKP 237 (533)
T ss_dssp TCCEEEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCC
T ss_pred HcccccccccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCC
Confidence 9999999999999974 7999999999 99999999998764 6788899886632 222 23454 5689
Q ss_pred ccccccccCCCeEEEeccCeeechhhhhcC----CC----ceeecCCCceEEEEEECCCCCCCCcEEEeCCCceeeeccc
Q 007379 350 TMMHDFAITENFVVVPDQQVVFKLKEMIRG----GS----PVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWN 421 (606)
Q Consensus 350 ~~~HDFaiTenyvVf~d~p~~~~~~~m~~g----~~----~~~~d~~~~tr~gVipR~~~d~~~vrw~e~p~~f~fH~~N 421 (606)
+|||||||||||+||+++|+++|+.+|+.| +. ++.|+|++++|||||||++++. .++||++++||+||++|
T Consensus 238 ~~iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~~-~~~~~~~~~~f~fH~~N 316 (533)
T 3kvc_A 238 SYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKY-INNKYRTSPFNLFHHIN 316 (533)
T ss_dssp BCCCCCEECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTEE-EEEEEEECCEEEEEEEE
T ss_pred ceeeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCCc-ccEEEEeCCeeEEeeee
Confidence 999999999999999999999999999876 43 6899999999999999997542 35789999999999999
Q ss_pred cccCCCCCeEEEEEeecCCCcchhhhc-h---------------hccccceeeEEEeCCCCC------------------
Q 007379 422 AWEEPERDEVVVIGSCMTPADSIFNEC-D---------------ESLKSVLSEIRLNLKTGE------------------ 467 (606)
Q Consensus 422 A~Ee~~~~~vVv~~~~~~~~~~~~~~~-~---------------~~l~~~l~r~rldl~tG~------------------ 467 (606)
||||+ |+||++.|++.+...+++.. . ....++|+||||||++++
T Consensus 317 A~Ee~--~~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~ 394 (533)
T 3kvc_A 317 TYEDH--EFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAI 394 (533)
T ss_dssp EEEET--TEEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEE
T ss_pred eEEeC--CEEEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceee
Confidence 99985 78998877776524444321 0 123467999999998751
Q ss_pred --------eeeeeecccCCcc-cccCcccCC-ccCCCCCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCc
Q 007379 468 --------STRRPIISEDEQV-NLEAGMVNR-NLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEP 537 (606)
Q Consensus 468 --------~~~~~l~~~~~~~-~~EfP~In~-~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEP 537 (606)
++++.|.+ .+. ++|||+||+ +|.||+|||+|+++.+ .+++++|+|+|++||+.+.| +++|+|+|||
T Consensus 395 ~~~~~~~~~~~~~l~~--~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~-~~~~~~l~K~D~~tg~~~~w-~~~~~~~~EP 470 (533)
T 3kvc_A 395 LCSDETIWLEPEVLFS--GPRQAFEFPQINYQKYGGKPYTYAYGLGLN-HFVPDRLCKLNVKTKETWVW-QEPDSYPSEP 470 (533)
T ss_dssp ECTTSEEEEECEEEEC--BTTEEEEEEECCHHHHTTSCCCEEEEEEEE-TTEEEEEEEEETTTCCEEEE-CCTTCBCCCC
T ss_pred eccCCceeeeeeeecc--CCcccccCceECHHHhCCCcccEEEEeccC-CCCCceeEEEEcCCCCEEEE-eCCCccccCc
Confidence 23344431 125 899999999 7999999999998876 46789999999999999887 6899999999
Q ss_pred EeeeCCCCCCCCCCcEEEEEEEeCCC--CceEEEEEeCCCCCceEEEEcCCcCCCCccccccCc
Q 007379 538 LFFPRDPNSENEDDGYILAFVHDEKE--WKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGA 599 (606)
Q Consensus 538 vFVPr~p~~~~EDDGyLLs~V~d~~~--~~SeL~VlDA~~l~pvArv~LP~rVP~GFHG~fv~~ 599 (606)
+||||+ ++++|||||||++|||+.+ .+|+|+||||++|++||||+||+||||||||+|+++
T Consensus 471 iFVPrp-~~~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~~vArv~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 471 IFVSHP-DALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKKS 533 (533)
T ss_dssp EEEECT-TCCSTTCEEEEEEEECCSTTSCSEEEEEEETTTCCEEEEEEESSCCCCCCEEEEEEC
T ss_pred eeecCC-CCCCCCCcEEEEEEEeCCcCCCccEEEEEeCCCChhhEEEEeCCCCCCCccccccCC
Confidence 999996 7889999999999999986 567999999999999999999999999999999874
No 4
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=60.51 E-value=85 Score=34.48 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=47.8
Q ss_pred CCceEEEeccCCCCCcCcEEEEecc--CCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEe
Q 007379 495 KTRFAYLALAEPWPKVSGFAKVDLL--TGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVN 572 (606)
Q Consensus 495 ~~Ry~Y~~~~~p~~~~~givK~Dl~--tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlD 572 (606)
..||+|.+..+ +.|..+|+. ++++..- ... +.+|.-+.=.+ -..-|..||++.-++ ...+.|+|
T Consensus 207 DGr~lyv~~~d-----g~V~viD~~~~t~~~v~~-i~~---G~~P~~ia~s~-~~~pDGk~l~v~n~~----~~~v~ViD 272 (567)
T 1qks_A 207 SGRYLFVIGRD-----GKVNMIDLWMKEPTTVAE-IKI---GSEARSIETSK-MEGWEDKYAIAGAYW----PPQYVIMD 272 (567)
T ss_dssp TSCEEEEEETT-----SEEEEEETTSSSCCEEEE-EEC---CSEEEEEEECC-STTCTTTEEEEEEEE----TTEEEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCCCcEeEE-Eec---CCCCceeEEcc-ccCCCCCEEEEEEcc----CCeEEEEE
Confidence 56799976532 479999996 7664322 222 34555444320 000144587766554 35688999
Q ss_pred CCCCCceEEEEcC
Q 007379 573 AMTLELEATVKLP 585 (606)
Q Consensus 573 A~~l~pvArv~LP 585 (606)
+.+++++.++.+.
T Consensus 273 ~~t~~~~~~i~~~ 285 (567)
T 1qks_A 273 GETLEPKKIQSTR 285 (567)
T ss_dssp TTTCCEEEEEECC
T ss_pred CCCCcEEEEEecc
Confidence 9999999998875
No 5
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=58.78 E-value=24 Score=34.89 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=18.0
Q ss_pred ceEEEeccCCCCCcCcEEEEeccCCceEE
Q 007379 497 RFAYLALAEPWPKVSGFAKVDLLTGQVNK 525 (606)
Q Consensus 497 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~ 525 (606)
...|.....- .-+.|.++|++||++..
T Consensus 31 ~~LyestG~~--g~S~v~~vD~~tgkv~~ 57 (243)
T 3mbr_X 31 GHLYESTGET--GRSSVRKVDLETGRILQ 57 (243)
T ss_dssp TEEEEEECCT--TSCEEEEEETTTCCEEE
T ss_pred CEEEEECCCC--CCceEEEEECCCCCEEE
Confidence 4577654331 13679999999998654
No 6
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=58.73 E-value=59 Score=32.05 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=55.3
Q ss_pred EEeCCCCCeeeeeecccCCcccccCcc-cCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCceE-EEEcCCCccCCCc
Q 007379 460 RLNLKTGESTRRPIISEDEQVNLEAGM-VNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVN-KFIYGDQRYGGEP 537 (606)
Q Consensus 460 rldl~tG~~~~~~l~~~~~~~~~EfP~-In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~-~~~~g~g~~~gEP 537 (606)
++|++||++.++.-.. . --|+. |. .. ....|.+.... +-+.++|..|.+.. .+.++ +|+
T Consensus 47 ~vD~~tgkv~~~~~l~---~--~~fgeGi~--~~---~~~ly~ltw~~----~~v~v~D~~tl~~~~ti~~~-----~~G 107 (243)
T 3mbr_X 47 KVDLETGRILQRAEVP---P--PYFGAGIV--AW---RDRLIQLTWRN----HEGFVYDLATLTPRARFRYP-----GEG 107 (243)
T ss_dssp EEETTTCCEEEEEECC---T--TCCEEEEE--EE---TTEEEEEESSS----SEEEEEETTTTEEEEEEECS-----SCC
T ss_pred EEECCCCCEEEEEeCC---C--CcceeEEE--Ee---CCEEEEEEeeC----CEEEEEECCcCcEEEEEeCC-----CCc
Confidence 5799999987654321 0 00110 10 01 24588775432 57899999998754 34332 233
Q ss_pred EeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCceEEEEcC
Q 007379 538 LFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLP 585 (606)
Q Consensus 538 vFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP 585 (606)
.=+- .|.+.| +|-| +.+.|.++|+++++.+.++++-
T Consensus 108 wglt-------~dg~~L--~vSd---gs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 108 WALT-------SDDSHL--YMSD---GTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp CEEE-------ECSSCE--EEEC---SSSEEEEECTTTCCEEEEEECE
T ss_pred eEEe-------eCCCEE--EEEC---CCCeEEEEeCCCCeEEEEEEEc
Confidence 2111 122333 2334 3568999999999999999884
No 7
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=53.20 E-value=2e+02 Score=29.29 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=26.9
Q ss_pred CCCcEEEEEEEeCCC-----CceEEEEEeCCCCCceEEEEcCC
Q 007379 549 EDDGYILAFVHDEKE-----WKSELQIVNAMTLELEATVKLPS 586 (606)
Q Consensus 549 EDDGyLLs~V~d~~~-----~~SeL~VlDA~~l~pvArv~LP~ 586 (606)
.|.+.|.+..++... ...++.|+|+++.+.++++.++.
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~ 318 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH 318 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC
Confidence 355666555553211 23589999999999999998876
No 8
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=51.64 E-value=30 Score=30.63 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCCeEEEEEeeeccc--CcEEEEEEC----CCCCccccEEeeCCCcccccccccCCCeEEE
Q 007379 310 VTGDLFALSYDVVKK--PYLKYFRFS----PQGIKSPDVEIPLEEPTMMHDFAITENFVVV 364 (606)
Q Consensus 310 ~TGel~~~~y~~~~~--p~l~~~~~d----~~G~~~~~~~i~l~~p~~~HDFaiTenyvVf 364 (606)
.||..|.+....+.+ .-+++|+++ ++|.++|-..| ||+..+++|.+|
T Consensus 35 ktGdtf~it~~~~~~d~g~~KIyrv~~~~~~~g~L~RYkTI--------~d~~~~~~~~~f 87 (120)
T 4guc_A 35 KHGDTFDVTIYTGGKDTGIVKIYQLSGNENDEINLHRYKTI--------YDSGLKHNYGRF 87 (120)
T ss_dssp ETTCEEEEEEECCSSBCCEEEEEEECSCTTCSCCEEEEEEE--------ECCCCCTTEEEE
T ss_pred ccCCEEEEEEEcCCCccceEEEEEEccCCCCCcceEEEEEe--------ccCCCcCCeeEE
Confidence 478888877664432 248999997 56887776554 788999998887
No 9
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=47.66 E-value=42 Score=33.55 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=17.6
Q ss_pred eEEEeccCCCCCcCcEEEEeccCCceEE
Q 007379 498 FAYLALAEPWPKVSGFAKVDLLTGQVNK 525 (606)
Q Consensus 498 y~Y~~~~~p~~~~~givK~Dl~tg~~~~ 525 (606)
..|.+...- .-+.|.++|++||++..
T Consensus 54 ~LyestG~~--g~S~v~~vD~~Tgkv~~ 79 (262)
T 3nol_A 54 YFYESTGLN--GRSSIRKVDIESGKTLQ 79 (262)
T ss_dssp EEEEEEEET--TEEEEEEECTTTCCEEE
T ss_pred EEEEECCCC--CCceEEEEECCCCcEEE
Confidence 577655431 12579999999998653
No 10
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=46.09 E-value=2.1e+02 Score=27.56 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=41.6
Q ss_pred CCeEEEEEcC---CccEEEEeCCCCCcccccccccCCCCccccccCceecCCCCeEEEEEeeecccCcEEEEEECCCCCc
Q 007379 262 NNRLLAMSED---DLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIK 338 (606)
Q Consensus 262 ~grLlAl~E~---~~Py~vdi~p~~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p~l~~~~~d~~G~~ 338 (606)
+|+||+..+. +.-+.++++. ++++.+....-.+. -..+-.++|+...|+.-++. ...+.+|.++.+|..
T Consensus 50 dg~l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~----~p~~~a~spdg~~l~~~~~~---~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 50 KDCLYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVAPGT----PPAYVAVDEARQLVYSANYH---KGTAEVMKIAADGAL 121 (347)
T ss_dssp TCEEEEEEEETTEEEEEEEEEET-TEEEEEEEEEEESC----CCSEEEEETTTTEEEEEETT---TTEEEEEEECTTSCE
T ss_pred CCeEEEEEecCCCceEEEEEecC-CcEEEeeeeecCCC----CCEEEEECCCCCEEEEEeCC---CCEEEEEEeCCCCCe
Confidence 5778887763 3445566544 66666554221111 11233457764446555542 345788888888876
Q ss_pred cccEEee
Q 007379 339 SPDVEIP 345 (606)
Q Consensus 339 ~~~~~i~ 345 (606)
.....+.
T Consensus 122 ~~~~~~~ 128 (347)
T 3hfq_A 122 TLTDTVQ 128 (347)
T ss_dssp EEEEEEE
T ss_pred eecceee
Confidence 5444443
No 11
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=45.72 E-value=1.2e+02 Score=29.93 Aligned_cols=97 Identities=16% Similarity=0.022 Sum_probs=57.6
Q ss_pred EEEeCCCCCeeeeeecccCCcccccCcc-cCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCceEE-EEcCCCccCCC
Q 007379 459 IRLNLKTGESTRRPIISEDEQVNLEAGM-VNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNK-FIYGDQRYGGE 536 (606)
Q Consensus 459 ~rldl~tG~~~~~~l~~~~~~~~~EfP~-In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gE 536 (606)
.+||++||++.++.-.. ...|+. +.. .| +..|.+.... +.+..+|..|+++.. +.+| .+|
T Consensus 47 ~~iD~~tg~v~~~i~l~-----~~~fgeGi~~--~g---~~lyv~t~~~----~~v~viD~~t~~v~~~i~~g----~~~ 108 (266)
T 2iwa_A 47 RQVALQTGKVENIHKMD-----DSYFGEGLTL--LN---EKLYQVVWLK----NIGFIYDRRTLSNIKNFTHQ----MKD 108 (266)
T ss_dssp EEEETTTCCEEEEEECC-----TTCCEEEEEE--ET---TEEEEEETTC----SEEEEEETTTTEEEEEEECC----SSS
T ss_pred EEEECCCCCEEEEEecC-----CCcceEEEEE--eC---CEEEEEEecC----CEEEEEECCCCcEEEEEECC----CCC
Confidence 35889999987653221 112221 111 12 3688775432 578899999987543 3333 234
Q ss_pred cEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCceEEEEcC
Q 007379 537 PLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLP 585 (606)
Q Consensus 537 PvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP 585 (606)
+.=+-. |.++|+ |-| +...|.++|+++++.++++.+.
T Consensus 109 g~glt~-------Dg~~l~--vs~---gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 109 GWGLAT-------DGKILY--GSD---GTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp CCEEEE-------CSSSEE--EEC---SSSEEEEECTTTCCEEEEEECE
T ss_pred eEEEEE-------CCCEEE--EEC---CCCeEEEEECCCCcEEEEEEEC
Confidence 432221 234444 334 3568999999999999999875
No 12
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=43.42 E-value=1e+02 Score=30.66 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=55.8
Q ss_pred EEeCCCCCeeeeeecccCCcccccCcc-cCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCceE-EEEcCCCccCCCc
Q 007379 460 RLNLKTGESTRRPIISEDEQVNLEAGM-VNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVN-KFIYGDQRYGGEP 537 (606)
Q Consensus 460 rldl~tG~~~~~~l~~~~~~~~~EfP~-In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~-~~~~g~g~~~gEP 537 (606)
++|++||++.++.-.. . --|+. |.. ..+..|.+.... +-+..+|..|.+.. .+.++ +|+
T Consensus 69 ~vD~~Tgkv~~~~~l~---~--~~FgeGit~-----~g~~ly~ltw~~----~~v~v~D~~t~~~~~ti~~~-----~eG 129 (262)
T 3nol_A 69 KVDIESGKTLQQIELG---K--RYFGEGISD-----WKDKIVGLTWKN----GLGFVWNIRNLRQVRSFNYD-----GEG 129 (262)
T ss_dssp EECTTTCCEEEEEECC---T--TCCEEEEEE-----ETTEEEEEESSS----SEEEEEETTTCCEEEEEECS-----SCC
T ss_pred EEECCCCcEEEEEecC---C--ccceeEEEE-----eCCEEEEEEeeC----CEEEEEECccCcEEEEEECC-----CCc
Confidence 5799999987654331 0 01110 111 124678775432 57899999998854 44332 232
Q ss_pred EeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCceEEEEcC
Q 007379 538 LFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLP 585 (606)
Q Consensus 538 vFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP 585 (606)
. +-..|.+.|+ +-| +.+.|.++|+++++.++++.+.
T Consensus 130 ~-------glt~dg~~L~--~Sd---Gs~~i~~iDp~T~~v~~~I~V~ 165 (262)
T 3nol_A 130 W-------GLTHNDQYLI--MSD---GTPVLRFLDPESLTPVRTITVT 165 (262)
T ss_dssp C-------CEEECSSCEE--ECC---SSSEEEEECTTTCSEEEEEECE
T ss_pred e-------EEecCCCEEE--EEC---CCCeEEEEcCCCCeEEEEEEec
Confidence 2 1112333333 224 3568999999999999999884
No 13
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=42.16 E-value=34 Score=38.31 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=57.4
Q ss_pred ccCcccCCcc-CCC-CCceEEEeccCCCCCcCcEEEEeccCCceEE-EEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEE
Q 007379 482 LEAGMVNRNL-LGR-KTRFAYLALAEPWPKVSGFAKVDLLTGQVNK-FIYGDQRYGGEPLFFPRDPNSENEDDGYILAFV 558 (606)
Q Consensus 482 ~EfP~In~~~-~Gr-~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V 558 (606)
.+.+.++-.+ .|. ..||+|.+.... +.|+++|+.+.++.+ ...+.|.- -+-+.+-+ -.|.+||++--
T Consensus 85 gd~hh~~~s~t~g~~DG~~lfVnd~~~----~rVavIdl~t~~~~~ii~ip~g~~-phg~~~~~-----~p~~~~v~~~~ 154 (595)
T 1fwx_A 85 GDLHHVHMSFTEGKYDGRFLFMNDKAN----TRVARVRCDVMKCDAILEIPNAKG-IHGLRPQK-----WPRSNYVFCNG 154 (595)
T ss_dssp CCBCCEEEEEETTEEEEEEEEEEETTT----TEEEEEETTTTEEEEEEECSSCCS-EEEEEECC-----SSBCSEEEEEE
T ss_pred CCCCccccCCCCCCcCCCEEEEEcCCC----CEEEEEECCCceEeeEEeCCCCCC-Ccceeeee-----cCCCcEEEEec
Confidence 3444444444 233 457999754331 579999999988554 22322211 11222211 02456765442
Q ss_pred -------------EeCCCCceEEEEEeCCCCCceEEEEcCCcCCCCc
Q 007379 559 -------------HDEKEWKSELQIVNAMTLELEATVKLPSRVPYGF 592 (606)
Q Consensus 559 -------------~d~~~~~SeL~VlDA~~l~pvArv~LP~rVP~GF 592 (606)
.+.+...+-+-|+|+.+|+.+++|.++.. |-+.
T Consensus 155 ~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~-pd~~ 200 (595)
T 1fwx_A 155 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN-LDNC 200 (595)
T ss_dssp CSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC-CCCE
T ss_pred ccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC-ccce
Confidence 12234567899999999999999999652 4443
No 14
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=42.08 E-value=2.6e+02 Score=27.50 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=42.5
Q ss_pred CCCceEEEeccCCC-CCcCcEEEEecc-CCceEE---EEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEE
Q 007379 494 RKTRFAYLALAEPW-PKVSGFAKVDLL-TGQVNK---FIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSEL 568 (606)
Q Consensus 494 r~~Ry~Y~~~~~p~-~~~~givK~Dl~-tg~~~~---~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL 568 (606)
...||.|.+..... ...+.|.-+|+. +|+... .....+..+..-.|-|+. = |..||++. +...++-.+
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~--~---dg~~l~v~--~~~~~~v~v 336 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP--W---SDEWMAIT--DDQEGWLEI 336 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT--T---CTTEEEEE--CSSSCEEEE
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCC--c---CCCEEEEE--EcCCCeEEE
Confidence 34567776543211 112256666764 666443 111122222222334431 0 45576533 333344455
Q ss_pred EEEeCCCCCceEEEEcCCc
Q 007379 569 QIVNAMTLELEATVKLPSR 587 (606)
Q Consensus 569 ~VlDA~~l~pvArv~LP~r 587 (606)
+-+|...|++++++.+|..
T Consensus 337 ~~~~~~~l~~~~~~~~~~p 355 (365)
T 1jof_A 337 YRWKDEFLHRVARVRIPEP 355 (365)
T ss_dssp EEEETTEEEEEEEEECCST
T ss_pred EEEchhhCceeeEEEcCCC
Confidence 5566676777888888754
No 15
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=39.84 E-value=73 Score=31.64 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=47.1
Q ss_pred ceEEEeccCCCCCcCcEEEEeccCCceEE-EEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCC
Q 007379 497 RFAYLALAEPWPKVSGFAKVDLLTGQVNK-FIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMT 575 (606)
Q Consensus 497 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~ 575 (606)
...|.+.... .-+.|.++|+.||++.. ...+++.| +|- +.+.. + . .++-+. ....+.|+|+++
T Consensus 32 g~Lyvstg~~--~~s~v~~iD~~tg~v~~~i~l~~~~f-geG-i~~~g------~--~--lyv~t~--~~~~v~viD~~t 95 (266)
T 2iwa_A 32 DTLFESTGLY--GRSSVRQVALQTGKVENIHKMDDSYF-GEG-LTLLN------E--K--LYQVVW--LKNIGFIYDRRT 95 (266)
T ss_dssp TEEEEEECST--TTCEEEEEETTTCCEEEEEECCTTCC-EEE-EEEET------T--E--EEEEET--TCSEEEEEETTT
T ss_pred CeEEEECCCC--CCCEEEEEECCCCCEEEEEecCCCcc-eEE-EEEeC------C--E--EEEEEe--cCCEEEEEECCC
Confidence 3688765321 13689999999999654 33343322 232 22221 2 2 233343 445799999999
Q ss_pred CCceEEEEcCCcCCCCc
Q 007379 576 LELEATVKLPSRVPYGF 592 (606)
Q Consensus 576 l~pvArv~LP~rVP~GF 592 (606)
++.++++..+ .|.|.
T Consensus 96 ~~v~~~i~~g--~~~g~ 110 (266)
T 2iwa_A 96 LSNIKNFTHQ--MKDGW 110 (266)
T ss_dssp TEEEEEEECC--SSSCC
T ss_pred CcEEEEEECC--CCCeE
Confidence 9999999887 44443
No 16
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=39.31 E-value=91 Score=33.10 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=47.1
Q ss_pred CceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCC-----CCceEEEE
Q 007379 496 TRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEK-----EWKSELQI 570 (606)
Q Consensus 496 ~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~-----~~~SeL~V 570 (606)
.+++|.+........+.|..+|+.|+++..- ..-|. +|=++-.+ |..+|.+.-.... .+...+.|
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-I~vG~---~Pgia~Sp------Dgk~lyVan~~~~~~~~G~~~~~Vsv 153 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGM-TDGGF---LPHPVAAE------DGSFFAQASTVFERIARGKRTDYVEV 153 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEE-EEECS---SCEEEECT------TSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEE-EECCC---CCceEECC------CCCEEEEEeccccccccCCCCCEEEE
Confidence 3568876543111117899999999986532 22233 34223232 3344443322111 12347999
Q ss_pred EeCCCCCceEEEEcC
Q 007379 571 VNAMTLELEATVKLP 585 (606)
Q Consensus 571 lDA~~l~pvArv~LP 585 (606)
+|+++++.++++.+|
T Consensus 154 iD~~t~~vv~~I~v~ 168 (426)
T 3c75_H 154 FDPVTFLPIADIELP 168 (426)
T ss_dssp ECTTTCCEEEEEEET
T ss_pred EECCCCcEEEEEECC
Confidence 999999999999997
No 17
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=37.01 E-value=1.3e+02 Score=30.07 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=56.7
Q ss_pred EEeCCCCCeeeeeecccCCcccccCcc-cCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCceE-EEEcCCCccCCCc
Q 007379 460 RLNLKTGESTRRPIISEDEQVNLEAGM-VNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVN-KFIYGDQRYGGEP 537 (606)
Q Consensus 460 rldl~tG~~~~~~l~~~~~~~~~EfP~-In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~-~~~~g~g~~~gEP 537 (606)
++|++||++.++. ..+ --|+. |. .. .+..|.+.... +-+..+|..|++.. .+.++ +|+
T Consensus 79 ~iD~~Tgkv~~~~-l~~-----~~FgeGit--~~---g~~Ly~ltw~~----~~v~V~D~~Tl~~~~ti~~~-----~eG 138 (268)
T 3nok_A 79 QLSLESAQPVWME-RLG-----NIFAEGLA--SD---GERLYQLTWTE----GLLFTWSGMPPQRERTTRYS-----GEG 138 (268)
T ss_dssp ECCSSCSSCSEEE-ECT-----TCCEEEEE--EC---SSCEEEEESSS----CEEEEEETTTTEEEEEEECS-----SCC
T ss_pred EEECCCCcEEeEE-CCC-----CcceeEEE--Ee---CCEEEEEEccC----CEEEEEECCcCcEEEEEeCC-----Cce
Confidence 4789999987666 421 11110 11 11 23577765432 57899999998854 34332 222
Q ss_pred EeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCceEEEEcCC
Q 007379 538 LFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPS 586 (606)
Q Consensus 538 vFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP~ 586 (606)
. +-..|.+.|+. -| +.+.|.++|+++++.++++.+..
T Consensus 139 w-------GLt~Dg~~L~v--Sd---Gs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 139 W-------GLCYWNGKLVR--SD---GGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp C-------CEEEETTEEEE--EC---SSSEEEEECTTTCCEEEEEECEE
T ss_pred e-------EEecCCCEEEE--EC---CCCEEEEEcCCCCeEEEEEEeCC
Confidence 1 11223444433 34 46689999999999999998853
No 18
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=36.55 E-value=1.1e+02 Score=32.35 Aligned_cols=110 Identities=11% Similarity=-0.021 Sum_probs=62.4
Q ss_pred EEEeCCCCCeeeeeecccCCcccccCcccCCccCCCCCceEEEeccCCC-----CCcCcEEEEeccCCceEEE-EcC-CC
Q 007379 459 IRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPW-----PKVSGFAKVDLLTGQVNKF-IYG-DQ 531 (606)
Q Consensus 459 ~rldl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~-----~~~~givK~Dl~tg~~~~~-~~g-~g 531 (606)
..||+.|+++..+--. ...| +- ..-...|++|.+..... ..-+.|..+|+.|+++... ..+ ++
T Consensus 102 sVID~~t~~vv~~I~v-------G~~P--gi-a~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 102 FVIDGSTGRILGMTDG-------GFLP--HP-VAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEETTTTEEEEEEEE-------CSSC--EE-EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred EEEECCCCEEEEEEEC-------CCCC--ce-EECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 4578888877543221 1123 11 12345678887653110 0125799999999986543 333 33
Q ss_pred cc--CCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCceEEEEcCC
Q 007379 532 RY--GGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPS 586 (606)
Q Consensus 532 ~~--~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP~ 586 (606)
++ +..|--+- -..|..||.+. +. .....+.|+|.++.+.++++.+|.
T Consensus 172 r~~~g~~P~~~~-----~spDGk~lyV~--n~-~~~~~VsVID~~t~kvv~~I~v~g 220 (426)
T 3c75_H 172 RFLVGTYQWMNA-----LTPDNKNLLFY--QF-SPAPAVGVVDLEGKTFDRMLDVPD 220 (426)
T ss_dssp CCCBSCCGGGSE-----ECTTSSEEEEE--EC-SSSCEEEEEETTTTEEEEEEECCS
T ss_pred ccccCCCcceEE-----EcCCCCEEEEE--ec-CCCCeEEEEECCCCeEEEEEEcCC
Confidence 32 12222111 22355576544 32 124679999999999999999874
No 19
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=35.62 E-value=2e+02 Score=29.56 Aligned_cols=79 Identities=10% Similarity=0.002 Sum_probs=46.1
Q ss_pred ceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEE--EeCC---CCceEEEEE
Q 007379 497 RFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFV--HDEK---EWKSELQIV 571 (606)
Q Consensus 497 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V--~d~~---~~~SeL~Vl 571 (606)
+.+|..........+.+.-+|+.|+++..- ..-|..+ -++..+ |..+|.+.- +... +....|.|+
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~-i~vG~~P---~i~~sp------Dg~~lyVan~~~~r~~~G~~~~~Vsvi 101 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGH-SLGAFLS---LAVAGH------SGSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEE-EEECTTC---EEEECT------TSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEE-EeCCCCC---ceEECC------CCCEEEEEcccccccccCCCCCEEEEE
Confidence 347865433211122788999999986543 2333333 344443 222333222 2211 123579999
Q ss_pred eCCCCCceEEEEcC
Q 007379 572 NAMTLELEATVKLP 585 (606)
Q Consensus 572 DA~~l~pvArv~LP 585 (606)
|..++++++++.+|
T Consensus 102 D~~T~~vv~~I~v~ 115 (368)
T 1mda_H 102 DPVTFLPIADIELP 115 (368)
T ss_dssp CTTTCCEEEEEEET
T ss_pred ECCCCCEEEEEECC
Confidence 99999999999997
No 20
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=32.30 E-value=2e+02 Score=29.20 Aligned_cols=80 Identities=13% Similarity=0.127 Sum_probs=46.4
Q ss_pred CceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEE--eC-CC--CceEEEE
Q 007379 496 TRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVH--DE-KE--WKSELQI 570 (606)
Q Consensus 496 ~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~--d~-~~--~~SeL~V 570 (606)
.+++|.+..........|..+|+.++++..- ...|..+ +..|=| |..+|.+.-. +. .+ ....+.|
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-i~~g~~p-~i~~sp--------Dg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VNGGFLP-NPVAAH--------SGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCCeEEEE-ecCCCCC-CeEECC--------CCCEEEEEeccccccccCCCCCeEEE
Confidence 4789977541111111789999999986532 3444333 444433 3334443321 11 11 1235779
Q ss_pred EeCCCCCceEEEEcC
Q 007379 571 VNAMTLELEATVKLP 585 (606)
Q Consensus 571 lDA~~l~pvArv~LP 585 (606)
+|++++++++++.++
T Consensus 102 iD~~t~~~~~~i~~~ 116 (373)
T 2mad_H 102 FDPVTFLPIADIELP 116 (373)
T ss_pred EECCCCcEEEEEECC
Confidence 999999999999997
No 21
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=31.90 E-value=4.6e+02 Score=27.28 Aligned_cols=258 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCeEEEEEc-----CCccEEEEeCCCCCcccccccccCCCCccccccCceecCCCCeEEEEEeeecc----cCcEEEEEE
Q 007379 262 NNRLLAMSE-----DDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVK----KPYLKYFRF 332 (606)
Q Consensus 262 ~grLlAl~E-----~~~Py~vdi~p~~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~----~p~l~~~~~ 332 (606)
+.++|...+ ++.=+.|| . .|++.++...-+..- |-.+.|+...+|.-+....+ ..-=.+.++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD--~-~t~~v~~~I~vG~~P------~va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVID--G-EAGRVIGMIDGGFLP------NPVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEE--T-TTTEEEEEEEECSSC------EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEcCcccCCCCEEEEEE--C-CCCeEEEEEECCCCC------cEEECCCCCEEEEEcccccccccCCCCCEEEEE
Q ss_pred CCCCCccccEEeeCCC------cccccccccCCCeEEEeccCeeechhhhhcCCCceeecCCCceEEEEEECCCCCCCCc
Q 007379 333 SPQGIKSPDVEIPLEE------PTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKM 406 (606)
Q Consensus 333 d~~G~~~~~~~i~l~~------p~~~HDFaiTenyvVf~d~p~~~~~~~m~~g~~~~~~d~~~~tr~gVipR~~~d~~~v 406 (606)
|... ......|+++. -...|.++++.+ |...+..+......+-||+-. +...+
T Consensus 115 D~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spD------------------Gk~lyVan~~~~~~VsVID~~--t~~vv 173 (386)
T 3sjl_D 115 DPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPD------------------GKTLLFYQFSPAPAVGVVDLE--GKAFK 173 (386)
T ss_dssp CTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTT------------------SSEEEEEECSSSCEEEEEETT--TTEEE
T ss_pred ECCC-CeEEEEEECCCccccccCCCCceEEEcCC------------------CCEEEEEEcCCCCeEEEEECC--CCcEE
Q ss_pred EEEeCCCceeeeccccccCCCCCeEEEEEeecCCCcchhhhchhccccceeeEEEeCCC-CCeeeee--ecccCCccccc
Q 007379 407 KWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKT-GESTRRP--IISEDEQVNLE 483 (606)
Q Consensus 407 rw~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~~~~~~~~~~~l~~~l~r~rldl~t-G~~~~~~--l~~~~~~~~~E 483 (606)
+.+++|.| +..|-.+ ....+ ..|... ..+.+++.+ |++.... +. +..-+
T Consensus 174 ~tI~v~g~-----~~~~P~g--~~~~~-~~~~DG----------------~~~~v~~~~~g~v~~~~~~~~----~~~~~ 225 (386)
T 3sjl_D 174 RMLDVPDC-----YHIFPTA--PDTFF-MHCRDG----------------SLAKVAFGTEGTPEITHTEVF----HPEDE 225 (386)
T ss_dssp EEEECCSE-----EEEEEEE--TTEEE-EEETTS----------------CEEEEECCSSSCCEEEECCCC----SCTTS
T ss_pred EEEECCCc-----ceeecCC--CceeE-EECCCC----------------CEEEEECCCCCeEEEeeccee----ccccc
Q ss_pred CcccCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCc---eEEEE-cCC-----CccCCCcEeeeCCCCCCCCCCcEE
Q 007379 484 AGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQ---VNKFI-YGD-----QRYGGEPLFFPRDPNSENEDDGYI 554 (606)
Q Consensus 484 fP~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~---~~~~~-~g~-----g~~~gEPvFVPr~p~~~~EDDGyL 554 (606)
.=..|..|.....|+.|..... .+.-+|+.++. .+.|. +.+ |.-++.-.=+.=. .|.+.|
T Consensus 226 ~~~~~~~~~~~dG~~~~vs~~g------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~-----~~~~~l 294 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVWPTYTG------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH-----RALDRI 294 (386)
T ss_dssp CBCSCCEEETTTTEEEEEBTTS------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE-----TTTTEE
T ss_pred cccccceeEcCCCcEEEEeCCC------EEEEEECCCCcceeecceeccccccccccccCCCcceeeEC-----CCCCeE
Q ss_pred EEEEEeCCCCc-----eEEEEEeCCCCCceEEEEcCCcC
Q 007379 555 LAFVHDEKEWK-----SELQIVNAMTLELEATVKLPSRV 588 (606)
Q Consensus 555 Ls~V~d~~~~~-----SeL~VlDA~~l~pvArv~LP~rV 588 (606)
.+..++...+. .+++|+|+++.+.++++.++.++
T Consensus 295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~ 333 (386)
T 3sjl_D 295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI 333 (386)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred EEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCc
No 22
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=31.37 E-value=1.3e+02 Score=30.11 Aligned_cols=71 Identities=14% Similarity=-0.003 Sum_probs=45.4
Q ss_pred ceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCC
Q 007379 497 RFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTL 576 (606)
Q Consensus 497 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l 576 (606)
...|.+...- ..|.++|++||++..-..++. +.+|-+-+ . .+--|++ +. ....+.|+|++++
T Consensus 65 ~~Ly~stG~~----g~v~~iD~~Tgkv~~~~l~~~-~FgeGit~-~------g~~Ly~l----tw--~~~~v~V~D~~Tl 126 (268)
T 3nok_A 65 GHFFESTGHQ----GTLRQLSLESAQPVWMERLGN-IFAEGLAS-D------GERLYQL----TW--TEGLLFTWSGMPP 126 (268)
T ss_dssp TEEEEEETTT----TEEEECCSSCSSCSEEEECTT-CCEEEEEE-C------SSCEEEE----ES--SSCEEEEEETTTT
T ss_pred CEEEEEcCCC----CEEEEEECCCCcEEeEECCCC-cceeEEEE-e------CCEEEEE----Ec--cCCEEEEEECCcC
Confidence 5678765442 349999999998654334443 33444422 2 1223333 32 3458999999999
Q ss_pred CceEEEEcC
Q 007379 577 ELEATVKLP 585 (606)
Q Consensus 577 ~pvArv~LP 585 (606)
+.++++..+
T Consensus 127 ~~~~ti~~~ 135 (268)
T 3nok_A 127 QRERTTRYS 135 (268)
T ss_dssp EEEEEEECS
T ss_pred cEEEEEeCC
Confidence 999999986
No 23
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=21.20 E-value=5.2e+02 Score=24.27 Aligned_cols=76 Identities=7% Similarity=0.028 Sum_probs=44.8
Q ss_pred CCceEEEeccCCCCCcCcEEEEeccCCce-EEEEcCCCccCCCcEe-eeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEe
Q 007379 495 KTRFAYLALAEPWPKVSGFAKVDLLTGQV-NKFIYGDQRYGGEPLF-FPRDPNSENEDDGYILAFVHDEKEWKSELQIVN 572 (606)
Q Consensus 495 ~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~-~~~~~g~g~~~gEPvF-VPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlD 572 (606)
..++.|.+.... +.|..+|+.+++. ... ...+ ..|.. +--. .|..+|+ +.+...+...+.|+|
T Consensus 50 dg~~l~~~~~~~----~~i~~~d~~~~~~~~~~-~~~~---~~~~~~~~~s-----~dg~~l~--~~~~~~~~~~i~v~d 114 (331)
T 3u4y_A 50 DCSNVVVTSDFC----QTLVQIETQLEPPKVVA-IQEG---QSSMADVDIT-----PDDQFAV--TVTGLNHPFNMQSYS 114 (331)
T ss_dssp SSCEEEEEESTT----CEEEEEECSSSSCEEEE-EEEC---SSCCCCEEEC-----TTSSEEE--ECCCSSSSCEEEEEE
T ss_pred CCCEEEEEeCCC----CeEEEEECCCCceeEEe-cccC---CCCccceEEC-----CCCCEEE--EecCCCCcccEEEEE
Confidence 345788765432 4799999999985 322 2222 23333 2221 2445565 444333444899999
Q ss_pred CCCCCceEEEEcC
Q 007379 573 AMTLELEATVKLP 585 (606)
Q Consensus 573 A~~l~pvArv~LP 585 (606)
..+.+.+..+...
T Consensus 115 ~~~~~~~~~~~~~ 127 (331)
T 3u4y_A 115 FLKNKFISTIPIP 127 (331)
T ss_dssp TTTTEEEEEEECC
T ss_pred CCCCCeEEEEECC
Confidence 9888777776654
No 24
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=20.61 E-value=18 Score=30.06 Aligned_cols=12 Identities=50% Similarity=1.068 Sum_probs=9.5
Q ss_pred eecCcccCCCCC
Q 007379 11 IDLGSCKDSCSS 22 (606)
Q Consensus 11 ~~~~~~~~~~~~ 22 (606)
|-+-|||.|||.
T Consensus 46 IKiRsCKGSCar 57 (87)
T 1fzc_A 46 IKIRSCRGSCSR 57 (87)
T ss_dssp HHHHTTTTTBSC
T ss_pred hhhhhccchHHH
Confidence 346799999985
No 25
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=20.54 E-value=5.9e+02 Score=24.66 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=44.5
Q ss_pred CCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCC------CceEE
Q 007379 495 KTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKE------WKSEL 568 (606)
Q Consensus 495 ~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~------~~SeL 568 (606)
..++.|.+... .-+.|..+|+.++++.... ..+ ..|.-+ .-..||-++........ ....|
T Consensus 139 ~~~~lyv~~~~---~~~~v~viD~~t~~~~~~i-~~g---~~p~~i------~~~~dG~l~v~~~~~~~~~~~~~~~~~v 205 (328)
T 3dsm_A 139 YGKYVYVNCWS---YQNRILKIDTETDKVVDEL-TIG---IQPTSL------VMDKYNKMWTITDGGYEGSPYGYEAPSL 205 (328)
T ss_dssp ETTEEEEEECT---TCCEEEEEETTTTEEEEEE-ECS---SCBCCC------EECTTSEEEEEBCCBCTTCSSCBCCCEE
T ss_pred ECCEEEEEcCC---CCCEEEEEECCCCeEEEEE-EcC---CCccce------EEcCCCCEEEEECCCccCCccccCCceE
Confidence 35678876431 1257999999999865432 112 122111 11224554433321111 13689
Q ss_pred EEEeCCCCCceEEEEcC
Q 007379 569 QIVNAMTLELEATVKLP 585 (606)
Q Consensus 569 ~VlDA~~l~pvArv~LP 585 (606)
.++|+++.+.+.++.+|
T Consensus 206 ~~id~~t~~v~~~~~~~ 222 (328)
T 3dsm_A 206 YRIDAETFTVEKQFKFK 222 (328)
T ss_dssp EEEETTTTEEEEEEECC
T ss_pred EEEECCCCeEEEEEecC
Confidence 99999999888888876
Done!