Query 007379
Match_columns 606
No_of_seqs 248 out of 1081
Neff 6.1
Searched_HMMs 13730
Date Tue Mar 26 00:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007379.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007379hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 38.0 3.8 0.00028 26.2 0.4 16 306-321 3-18 (31)
2 d1qksa2 b.70.2.1 (A:136-567) C 32.6 17 0.0013 35.4 4.7 33 553-585 381-413 (432)
3 d1l0qa2 b.69.2.3 (A:1-301) Sur 32.1 1.1E+02 0.0078 25.9 9.9 87 495-598 210-296 (301)
4 d1l0qa2 b.69.2.3 (A:1-301) Sur 28.5 97 0.007 26.3 8.8 72 497-586 2-74 (301)
5 d1m7ja2 b.92.1.6 (A:420-480) N 25.6 6.3 0.00046 28.7 -0.2 36 565-600 7-42 (61)
6 d1hzua2 b.70.2.1 (A:118-543) C 23.7 25 0.0018 33.5 3.9 33 553-585 375-407 (426)
7 d1pbyb_ b.69.2.2 (B:) Quinohem 20.3 1.6E+02 0.012 25.0 8.8 73 497-586 2-76 (337)
8 d1qnia2 b.69.3.1 (A:10-450) Ni 18.0 99 0.0072 30.5 7.2 82 496-587 83-177 (441)
9 d1jmxb_ b.69.2.2 (B:) Quinohem 16.1 84 0.0061 27.2 5.6 61 511-585 272-332 (346)
10 d1fwxa2 b.69.3.1 (A:8-451) Nit 15.1 1.1E+02 0.0082 30.4 6.5 83 495-586 98-193 (459)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=37.98 E-value=3.8 Score=26.24 Aligned_cols=16 Identities=44% Similarity=0.989 Sum_probs=13.2
Q ss_pred eecCCCCeEEEEEeee
Q 007379 306 KVDPVTGDLFALSYDV 321 (606)
Q Consensus 306 k~Dp~TGel~~~~y~~ 321 (606)
++||+|||+|.+-|+.
T Consensus 3 R~DP~TG~iYH~~f~p 18 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSP 18 (31)
T ss_dssp EECTTTCCEEESSSSC
T ss_pred cCCCCCCcEeEEecCC
Confidence 5799999999877763
No 2
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=32.64 E-value=17 Score=35.36 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=28.0
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCCceEEEEcC
Q 007379 553 YILAFVHDEKEWKSELQIVNAMTLELEATVKLP 585 (606)
Q Consensus 553 yLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP 585 (606)
+|+..+....+..+.++|+|++++++.++++-|
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 777777777777889999999999999988775
No 3
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=32.10 E-value=1.1e+02 Score=25.95 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=51.6
Q ss_pred CCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCC
Q 007379 495 KTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAM 574 (606)
Q Consensus 495 ~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~ 574 (606)
..++.|.+..+. ..+.|..+|+.+++.... +.. +++|.-|.=. .|..+|++. .. ....+.|+|.+
T Consensus 210 ~g~~~~v~~~~~--~~~~v~v~D~~t~~~~~~-~~~---~~~~~~va~s-----pdg~~l~va--~~--~~~~i~v~D~~ 274 (301)
T d1l0qa2 210 EGTKAYVTNVDK--YFNTVSMIDTGTNKITAR-IPV---GPDPAGIAVT-----PDGKKVYVA--LS--FCNTVSVIDTA 274 (301)
T ss_dssp TSSEEEEEEECS--SCCEEEEEETTTTEEEEE-EEC---CSSEEEEEEC-----TTSSEEEEE--ET--TTTEEEEEETT
T ss_pred cccccccccccc--eeeeeeeeecCCCeEEEE-EcC---CCCEEEEEEe-----CCCCEEEEE--EC--CCCeEEEEECC
Confidence 345555544432 235688889999875432 221 2345444432 244466433 32 23379999999
Q ss_pred CCCceEEEEcCCcCCCCccccccC
Q 007379 575 TLELEATVKLPSRVPYGFHGTFIG 598 (606)
Q Consensus 575 ~l~pvArv~LP~rVP~GFHG~fv~ 598 (606)
+.+.++++.+-. -|++. |.|+.
T Consensus 275 t~~~~~~~~vg~-~P~~~-g~f~~ 296 (301)
T d1l0qa2 275 TNTITATMAVGK-NPYAS-GQFIG 296 (301)
T ss_dssp TTEEEEEEECSS-SEECC-SSCEE
T ss_pred CCeEEEEEeCCC-CCcEe-EEEcc
Confidence 999999988743 47776 55554
No 4
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=28.49 E-value=97 Score=26.28 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=44.9
Q ss_pred ceEEEeccCCCCCcCcEEEEeccCCceE-EEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCC
Q 007379 497 RFAYLALAEPWPKVSGFAKVDLLTGQVN-KFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMT 575 (606)
Q Consensus 497 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~-~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~ 575 (606)
-|+|.+..+. +.|..+|++|+++. .+..| +.|.=|.= ..|..+|++. +. ....+.|+|..+
T Consensus 2 ~~~yV~~~~~----~~v~v~D~~t~~~~~~i~~g-----~~p~~va~-----spdG~~l~v~--~~--~~~~i~v~d~~t 63 (301)
T d1l0qa2 2 TFAYIANSES----DNISVIDVTSNKVTATIPVG-----SNPMGAVI-----SPDGTKVYVA--NA--HSNDVSIIDTAT 63 (301)
T ss_dssp EEEEEEETTT----TEEEEEETTTTEEEEEEECS-----SSEEEEEE-----CTTSSEEEEE--EG--GGTEEEEEETTT
T ss_pred eEEEEEECCC----CEEEEEECCCCeEEEEEECC-----CCceEEEE-----eCCCCEEEEE--EC--CCCEEEEEECCC
Confidence 3888664432 46899999999854 34333 34433322 2355576532 22 234799999999
Q ss_pred CCceEEEEcCC
Q 007379 576 LELEATVKLPS 586 (606)
Q Consensus 576 l~pvArv~LP~ 586 (606)
.+.++++....
T Consensus 64 ~~~~~~~~~~~ 74 (301)
T d1l0qa2 64 NNVIATVPAGS 74 (301)
T ss_dssp TEEEEEEECSS
T ss_pred Cceeeeeeccc
Confidence 99888887653
No 5
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=25.57 E-value=6.3 Score=28.71 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=31.0
Q ss_pred ceEEEEEeCCCCCceEEEEcCCcCCCCccccccCch
Q 007379 565 KSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAK 600 (606)
Q Consensus 565 ~SeL~VlDA~~l~pvArv~LP~rVP~GFHG~fv~~~ 600 (606)
...|+|||..++..-|..+-|...+-|++..|++..
T Consensus 7 ~ADlvvfDp~~i~d~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 7 YADLVVFDPATVADSATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp BCCEEEECTTTCBCCCCSSSTTCCCBSEEEEEETTE
T ss_pred CCCEEEECHHHccCcccccccccccceeEEEEECCE
Confidence 357999999998877888889999999999999865
No 6
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.68 E-value=25 Score=33.50 Aligned_cols=33 Identities=36% Similarity=0.353 Sum_probs=26.9
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCCceEEEEcC
Q 007379 553 YILAFVHDEKEWKSELQIVNAMTLELEATVKLP 585 (606)
Q Consensus 553 yLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP 585 (606)
+|++.++......+.+.|+|+++++++++++-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence 677667766677788999999999999988764
No 7
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=20.31 E-value=1.6e+02 Score=24.99 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=43.6
Q ss_pred ceEEEeccCCCCCcCcEEEEeccCCceEEEE-cC-CCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCC
Q 007379 497 RFAYLALAEPWPKVSGFAKVDLLTGQVNKFI-YG-DQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAM 574 (606)
Q Consensus 497 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~-~g-~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~ 574 (606)
+|.+.+..+ +.|.-+|+++++...-. .+ .+..+....|-| |.-+|++. . .....|.|+|..
T Consensus 2 ~~~vt~~~d-----~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp--------Dg~~l~v~--~--~~~~~v~v~D~~ 64 (337)
T d1pbyb_ 2 DYILAPARP-----DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--------GGRIAYAT--V--NKSESLVKIDLV 64 (337)
T ss_dssp EEEEEEETT-----TEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--------TSSEEEEE--E--TTTTEEEEEETT
T ss_pred eEEEEEcCC-----CEEEEEECCCCeEEEEEECCCCCCCccEEEECC--------CCCEEEEE--E--CCCCeEEEEECC
Confidence 456654432 57888999999865422 21 233333333333 22355432 2 223479999999
Q ss_pred CCCceEEEEcCC
Q 007379 575 TLELEATVKLPS 586 (606)
Q Consensus 575 ~l~pvArv~LP~ 586 (606)
+.+++.++.++.
T Consensus 65 t~~~~~~~~~~~ 76 (337)
T d1pbyb_ 65 TGETLGRIDLST 76 (337)
T ss_dssp TCCEEEEEECCB
T ss_pred CCcEEEEEecCC
Confidence 999999998863
No 8
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}
Probab=18.04 E-value=99 Score=30.53 Aligned_cols=82 Identities=9% Similarity=0.070 Sum_probs=48.1
Q ss_pred CceEEEeccCCCCCcCcEEEEeccCCceEE-EEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEE------------EeCC
Q 007379 496 TRFAYLALAEPWPKVSGFAKVDLLTGQVNK-FIYGDQRYGGEPLFFPRDPNSENEDDGYILAFV------------HDEK 562 (606)
Q Consensus 496 ~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V------------~d~~ 562 (606)
-||+|..... -+.|.++|+.|++... ...+.+.-+.--.|.|.+ --.|+++.- .+..
T Consensus 83 Gr~lfV~d~~----~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg------~t~YV~~~~~~~v~~~~dg~~~~~~ 152 (441)
T d1qnia2 83 GKYLFINDKA----NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVP------KTNYVFCNAEFVIPQPNDGTDFSLD 152 (441)
T ss_dssp EEEEEEEETT----TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSS------BCCEEEEEECSCEESSCSSSCCCGG
T ss_pred CCEEEEEcCC----CCEEEEEECCCCcEeeEEecCCCCCccceEEeccC------CEEEEEeccCCcccccCcccccccc
Confidence 5788865432 2579999999998654 333333222222344432 224444321 1222
Q ss_pred CCceEEEEEeCCCCCceEEEEcCCc
Q 007379 563 EWKSELQIVNAMTLELEATVKLPSR 587 (606)
Q Consensus 563 ~~~SeL~VlDA~~l~pvArv~LP~r 587 (606)
...+.+.++|+.+|+.++++.++..
T Consensus 153 ~~~~~~~~iD~~t~~v~~qI~v~~~ 177 (441)
T d1qnia2 153 NSYTMFTAIDAETMDVAWQVIVDGN 177 (441)
T ss_dssp GEEEEEEEEETTTCSEEEEEEESSC
T ss_pred cccceEEeecCccceeeEEEecCCC
Confidence 2335677899999999999988754
No 9
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=16.11 E-value=84 Score=27.24 Aligned_cols=61 Identities=23% Similarity=0.151 Sum_probs=0.0
Q ss_pred CcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCceEEEEcC
Q 007379 511 SGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLP 585 (606)
Q Consensus 511 ~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP 585 (606)
+.|..+|+.+++.... ...+..+.--.|=|.. ..++-...+ ..+.|+|+++++.|+++++|
T Consensus 272 ~~v~v~d~~~~~~~~~-~~~~~~~~~va~s~DG------------~~l~v~~~d-~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKA-ANLDHTYYCVAFDKKG------------DKLYLGGTF-NDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp SEEEEEETTTTEEEEE-EECSSCCCEEEECSSS------------SCEEEESBS-SEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEECCCCcEEEE-EcCCCCEEEEEEcCCC------------CEEEEEeCC-CcEEEEECccCCEEEEEECC
No 10
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}
Probab=15.06 E-value=1.1e+02 Score=30.43 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=46.6
Q ss_pred CCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCCCCCCCCcEEEEEEE-------------eC
Q 007379 495 KTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVH-------------DE 561 (606)
Q Consensus 495 ~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~~EDDGyLLs~V~-------------d~ 561 (606)
.-||+|..... -+.|+++||.+.++.+..--|..- +.--+-|.. ..--+||++.-- |.
T Consensus 98 DGrylFVNDka----n~RVAvIdl~~fkt~kIi~iPn~~-~~HG~r~~~----~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 98 DGRFLFMNDKA----NTRVARVRCDVMKCDAILEIPNAK-GIHGLRPQK----WPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEEEEEETT----TTEEEEEETTTTEEEEEEECSSCC-SEEEEEECC----SSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred ceeEEEEEcCC----CceEEEEECcceeeeEEEecCCCC-CCceeeccc----CCCeEEEEccCccccccCCCCccccch
Confidence 46889965422 157999999998865432212110 111111111 123345554221 12
Q ss_pred CCCceEEEEEeCCCCCceEEEEcCC
Q 007379 562 KEWKSELQIVNAMTLELEATVKLPS 586 (606)
Q Consensus 562 ~~~~SeL~VlDA~~l~pvArv~LP~ 586 (606)
+.-++.+.++|+.+|+....|.++.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~g 193 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVSG 193 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEESS
T ss_pred hhcceEEEEEecCCceEEEEeeeCC
Confidence 2334678899999999999988874
Done!