Query 007381
Match_columns 605
No_of_seqs 317 out of 1512
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 00:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 4E-53 1.4E-57 444.4 23.1 277 71-351 27-310 (320)
2 1aua_A Phosphatidylinositol tr 100.0 1.1E-52 3.8E-57 435.1 24.3 274 73-350 20-294 (296)
3 1olm_A SEC14-like protein 2; l 100.0 2.3E-45 7.9E-50 396.1 25.4 249 72-327 1-250 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 1.6E-44 5.3E-49 378.4 19.7 236 74-325 46-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 4.5E-44 1.5E-48 363.0 17.6 228 80-323 4-234 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.1 9E-11 3.1E-15 119.1 6.7 134 159-314 10-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.9 1.3E-09 4.4E-14 112.5 5.0 131 161-313 31-162 (290)
8 2bni_A General control protein 72.2 1 3.4E-05 30.9 0.6 16 528-543 1-16 (34)
9 2hy6_A General control protein 72.2 1 3.4E-05 30.8 0.6 16 528-543 1-16 (34)
10 3c3g_A Alpha/beta peptide with 71.9 4.6 0.00016 27.4 3.7 14 529-542 1-14 (33)
11 2oxj_A Hybrid alpha/beta pepti 70.3 5.2 0.00018 27.4 3.7 30 528-565 1-30 (34)
12 1uo4_A General control protein 68.2 5.4 0.00018 27.3 3.4 14 529-542 2-15 (34)
13 2wq1_A General control protein 68.1 7.6 0.00026 26.4 4.1 14 529-542 1-14 (33)
14 3c3f_A Alpha/beta peptide with 68.0 7.6 0.00026 26.5 4.1 15 528-542 1-15 (34)
15 3a8y_C BAG family molecular ch 64.3 20 0.00068 32.6 7.5 68 520-594 33-109 (142)
16 1m7k_A Silencer of death domai 64.2 13 0.00046 31.7 6.1 68 518-592 21-97 (99)
17 3m48_A General control protein 63.2 7.1 0.00024 26.6 3.3 13 529-541 1-13 (33)
18 1kd8_A GABH AIV, GCN4 acid bas 59.5 12 0.0004 25.9 3.9 14 528-541 1-14 (36)
19 1nkp_A C-MYC, MYC proto-oncoge 59.3 43 0.0015 27.7 8.3 66 528-593 16-85 (88)
20 1m62_A BAG-family molecular ch 59.1 30 0.001 28.9 7.2 66 520-592 10-84 (87)
21 1nkp_B MAX protein, MYC proto- 54.4 58 0.002 26.3 8.3 63 528-590 12-77 (83)
22 1kd8_B GABH BLL, GCN4 acid bas 53.4 25 0.00084 24.4 4.6 16 528-543 1-16 (36)
23 2dhy_A CUE domain-containing p 52.5 20 0.00069 28.4 4.9 47 78-132 12-58 (67)
24 2dam_A ETEA protein; KIAA0887, 51.0 62 0.0021 25.4 7.6 44 79-130 13-56 (67)
25 2r2v_A GCN4 leucine zipper; co 49.6 25 0.00084 24.1 4.1 16 528-543 1-16 (34)
26 1wgl_A TOLL-interacting protei 45.5 24 0.00081 27.2 4.2 39 86-132 11-49 (59)
27 3htk_A Structural maintenance 44.9 96 0.0033 23.2 7.8 46 551-596 10-55 (60)
28 1uk5_A BAG-family molecular ch 41.5 61 0.0021 28.2 6.6 68 520-594 29-105 (111)
29 1ugo_A BCL2-associated athanog 40.8 40 0.0014 28.8 5.2 66 521-593 18-92 (99)
30 1ic2_A Tropomyosin alpha chain 40.4 71 0.0024 25.8 6.6 59 523-585 15-73 (81)
31 1yke_B RNA polymerase II holoe 40.2 1.8E+02 0.0063 26.4 10.1 68 519-594 51-126 (151)
32 2p2u_A HOST-nuclease inhibitor 39.0 2.1E+02 0.0073 26.4 10.5 69 515-596 10-78 (171)
33 3rrk_A V-type ATPase 116 kDa s 38.1 1.1E+02 0.0039 31.1 9.5 65 531-595 199-269 (357)
34 2dal_A Protein KIAA0794; FAS a 35.7 81 0.0028 24.2 5.9 40 81-129 12-51 (62)
35 1pl5_A Regulatory protein SIR4 34.7 59 0.002 28.0 5.3 40 560-599 95-134 (142)
36 3etw_A Adhesin A; antiparallel 34.3 98 0.0034 27.2 6.8 74 524-597 5-108 (119)
37 2q9q_C DNA replication complex 34.0 92 0.0031 29.4 7.3 26 546-571 20-45 (196)
38 1v92_A NSFL1 cofactor P47; 3-h 33.5 69 0.0024 22.6 4.9 37 84-129 5-41 (46)
39 3e3v_A Regulatory protein RECX 33.1 29 0.001 32.3 3.6 78 50-132 85-163 (177)
40 2oqq_A Transcription factor HY 32.7 31 0.001 24.8 2.7 16 526-541 15-30 (42)
41 1nyh_A Regulatory protein SIR4 32.3 68 0.0023 28.3 5.4 40 560-599 119-158 (166)
42 1ufz_A Hypothetical protein BA 29.2 94 0.0032 25.6 5.4 41 85-132 35-75 (83)
43 1ykh_B RNA polymerase II holoe 28.7 3.1E+02 0.01 24.3 12.0 67 519-593 51-125 (132)
44 2ke4_A CDC42-interacting prote 28.6 73 0.0025 27.0 4.9 46 533-579 41-88 (98)
45 2di0_A Activating signal coint 28.5 1.2E+02 0.0041 24.3 5.8 44 80-131 9-52 (71)
46 2z5i_I TM, tropomyosin alpha-1 26.8 44 0.0015 23.8 2.6 20 556-575 20-39 (40)
47 3e21_A HFAF1, FAS-associated f 26.4 1.5E+02 0.0051 21.5 5.5 36 85-128 6-41 (45)
48 3u1c_A Tropomyosin alpha-1 cha 25.6 1.2E+02 0.0041 25.6 5.8 56 526-585 21-76 (101)
49 3dfg_A Xcrecx, regulatory prot 25.6 44 0.0015 30.6 3.3 75 50-130 83-157 (162)
50 3hf0_A GCN4-PLI SIDE chain seq 25.5 1.3E+02 0.0046 19.8 4.5 28 551-578 6-33 (34)
51 2dah_A Ubiquilin-3; UBA domain 25.1 1.6E+02 0.0054 22.0 5.8 38 86-132 11-48 (54)
52 1z96_A DNA-damage, UBA-domain 24.7 1E+02 0.0034 20.9 4.3 21 109-129 19-39 (40)
53 2ql2_B Neurod1, neurogenic dif 23.4 95 0.0032 23.8 4.3 43 528-570 12-58 (60)
54 1wr1_B Ubiquitin-like protein 23.3 1.4E+02 0.0049 22.7 5.2 38 85-131 18-55 (58)
55 1hlo_A Protein (transcription 23.1 1E+02 0.0034 24.7 4.7 47 528-574 22-71 (80)
56 2dna_A Unnamed protein product 22.6 1.7E+02 0.006 23.0 5.7 45 78-131 11-57 (67)
57 2l5g_B Putative uncharacterize 22.3 1.4E+02 0.0049 21.4 4.6 35 550-588 3-37 (42)
58 4aya_A DNA-binding protein inh 22.3 1.1E+02 0.0039 25.9 4.9 45 527-571 34-82 (97)
59 1vej_A Riken cDNA 4931431F19; 22.0 1.5E+02 0.0052 23.8 5.4 37 85-130 30-66 (74)
60 1g8x_A Myosin II heavy chain f 21.1 3.3E+02 0.011 32.2 10.4 61 526-589 819-887 (1010)
61 3d5l_A Regulatory protein RECX 20.4 48 0.0016 32.0 2.5 73 50-130 128-204 (221)
62 2kvs_A Uncharacterized protein 20.1 2.5E+02 0.0087 22.9 6.3 39 86-124 20-58 (80)
63 2ovc_A Potassium voltage-gated 20.1 46 0.0016 22.8 1.6 20 524-543 6-25 (33)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=4e-53 Score=444.39 Aligned_cols=277 Identities=35% Similarity=0.625 Sum_probs=250.0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccccch
Q 007381 71 VSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (605)
Q Consensus 71 v~s~~ied~~d~eE~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~ 150 (605)
.+++...++ +++|+++|++||+||.+++ ++...|| .+||||||||+||+++|.+||+++++||++++++.+..++.+
T Consensus 27 ~~~g~~~~l-t~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 27 ALPGTPGNL-TKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp SCTTSTTCC-CHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 445444444 7888999999999999888 4567777 599999999999999999999999999999999999877655
Q ss_pred H------HHHHHHhccCcccccCCCCCCcEEEEecCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhChhhhhhhcCCCC
Q 007381 151 K------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHID 224 (605)
Q Consensus 151 ~------el~~v~k~~p~~~~G~Dk~GRPV~i~rlg~~dp~kl~~~~t~~~~lr~~v~~~E~~~~~~~pacs~~~~~~i~ 224 (605)
+ +...+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++..+++|+...+..++
T Consensus 104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve 183 (320)
T 3q8g_A 104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE 183 (320)
T ss_dssp THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence 4 4456778999999999999999999999999999988888999999999999999998888888877777899
Q ss_pred cEEEEEECCCCCCCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhH
Q 007381 225 SSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK 304 (605)
Q Consensus 225 ~~tiIiDl~G~sl~~~~~~~~~lik~i~kilq~~YPerL~~I~IVNaP~~f~~lw~ivKpFL~~kT~~KI~~lg~~~~~~ 304 (605)
++++|+|++|+++++++. ...+++.++.++|++||+||+++||||+|++|+.+|++++|||+++|++||+|+++++.+.
T Consensus 184 ~~~~IiD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 184 TSCTVLDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CEEEEEECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred eeEEEEECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 999999999999999875 3788999999999999999999999999999999999999999999999999999888899
Q ss_pred HHhhcCCCCCCcccCCCcCCCCC-CCCccCCCCcccceeecCCCCcee
Q 007381 305 LLEIIDARELPEFLGGTCNCADQ-GGCLRSDKGPWQIVKVLNSDGKVI 351 (605)
Q Consensus 305 L~e~Id~s~LP~eyGGt~~~~~~-~gcl~~d~g~w~~~~~~~~~~~~~ 351 (605)
|.++||+++||++|||+++|.+. |||+.+|.|||..+.....+|..+
T Consensus 263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~~~~~~~ 310 (320)
T 3q8g_A 263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIGPEGEIP 310 (320)
T ss_dssp HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCCTTCCCC
T ss_pred HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcCCCCccC
Confidence 99999999999999999999884 999999999999887777776654
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.1e-52 Score=435.10 Aligned_cols=274 Identities=36% Similarity=0.661 Sum_probs=247.2
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccccchHH
Q 007381 73 SVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKE 152 (605)
Q Consensus 73 s~~ied~~d~eE~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~e 152 (605)
+....++ +++|+++|++||+||.+++ ++...|| .+||||||||+||+++|++||.++++||++++++.+..++.+.+
T Consensus 20 ~~~~~~l-~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~ 96 (296)
T 1aua_A 20 PGTPGNL-DSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDE 96 (296)
T ss_dssp TTSTTTC-CTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTT
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCc
Confidence 3333343 6778899999999999887 4667777 59999999999999999999999999999999988877665544
Q ss_pred HHHHHhccCcccccCCCCCCcEEEEecCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhChhhhhhhcCCCCcEEEEEEC
Q 007381 153 INEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDV 232 (605)
Q Consensus 153 l~~v~k~~p~~~~G~Dk~GRPV~i~rlg~~dp~kl~~~~t~~~~lr~~v~~~E~~~~~~~pacs~~~~~~i~~~tiIiDl 232 (605)
...+.++++++++|+|++||||+|+++|++|++++.+..+.+++++++++.+|.+++.++++|+...+.+++++++|+|+
T Consensus 97 ~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~ 176 (296)
T 1aua_A 97 KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDL 176 (296)
T ss_dssp HHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEEC
T ss_pred HHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEEC
Confidence 45567888999999999999999999999999998888899999999999999999888888988777889999999999
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcCCC
Q 007381 233 QGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAR 312 (605)
Q Consensus 233 ~G~sl~~~~~~~~~lik~i~kilq~~YPerL~~I~IVNaP~~f~~lw~ivKpFL~~kT~~KI~~lg~~~~~~L~e~Id~s 312 (605)
+|++++|++.. ..+++.++.++|+|||+||+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++||++
T Consensus 177 ~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~ 255 (296)
T 1aua_A 177 KGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAE 255 (296)
T ss_dssp TTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSS
T ss_pred CCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHh
Confidence 99999998753 78899999999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCCcccCCCcCCCCC-CCCccCCCCcccceeecCCCCce
Q 007381 313 ELPEFLGGTCNCADQ-GGCLRSDKGPWQIVKVLNSDGKV 350 (605)
Q Consensus 313 ~LP~eyGGt~~~~~~-~gcl~~d~g~w~~~~~~~~~~~~ 350 (605)
+||++|||+++|++. +||+.++.|||..+.....+|..
T Consensus 256 ~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~ 294 (296)
T 1aua_A 256 NLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIGPEGEA 294 (296)
T ss_dssp SSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCCTTCCC
T ss_pred hCcHHhCCCCCCCCCCCCceeCCCCCCCChhhccccCCC
Confidence 999999999999884 89999999999998877776654
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=2.3e-45 Score=396.14 Aligned_cols=249 Identities=30% Similarity=0.465 Sum_probs=219.0
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccccch
Q 007381 72 SSVSIEDVRDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (605)
Q Consensus 72 ~s~~ied~~d~eE~~~l~efRq~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~ 150 (605)
|++-..++ +++|+++|++||++|.+.. ++| ..|| .+||||||||+||+++|.+||+++++||++++++.+.... .
T Consensus 1 ~~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~-~ 76 (403)
T 1olm_A 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQ-P 76 (403)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSC-C
T ss_pred CCCCccCC-CHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccC-C
Confidence 33433444 7889999999999998763 465 4666 5999999999999999999999999999999998886632 2
Q ss_pred HHHHHHHhccCcccccCCCCCCcEEEEecCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhChhhhhhhcCCCCcEEEEE
Q 007381 151 KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSIL 230 (605)
Q Consensus 151 ~el~~v~k~~p~~~~G~Dk~GRPV~i~rlg~~dp~kl~~~~t~~~~lr~~v~~~E~~~~~~~pacs~~~~~~i~~~tiIi 230 (605)
++ .+.++++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.. +.++...+.+++|+++|+
T Consensus 77 ~~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~-~~~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 PE--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIY 153 (403)
T ss_dssp CH--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEE
T ss_pred HH--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HhhHHhhCCcccceEEEE
Confidence 32 245677888999999999999999999999998888899999999999999999863 334444455789999999
Q ss_pred ECCCCCCCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcC
Q 007381 231 DVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIID 310 (605)
Q Consensus 231 Dl~G~sl~~~~~~~~~lik~i~kilq~~YPerL~~I~IVNaP~~f~~lw~ivKpFL~~kT~~KI~~lg~~~~~~L~e~Id 310 (605)
|++|++++|+++..+++++.++.++|+|||+||+++||||+|++|.++|+++||||+++|++||+|+++++.+.|.++||
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~ 233 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSC
T ss_pred ECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcC
Confidence 99999999998878899999999999999999999999999999999999999999999999999999888889999999
Q ss_pred CCCCCcccCCCcCCCCC
Q 007381 311 ARELPEFLGGTCNCADQ 327 (605)
Q Consensus 311 ~s~LP~eyGGt~~~~~~ 327 (605)
+++||.+|||+++++++
T Consensus 234 ~~~LP~~yGG~~~~~~~ 250 (403)
T 1olm_A 234 PDQVPVEYGGTMTDPDG 250 (403)
T ss_dssp GGGSBGGGTSSBCCTTC
T ss_pred hhhCchhhCCCcCCCCC
Confidence 99999999999998654
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.6e-44 Score=378.40 Aligned_cols=236 Identities=21% Similarity=0.334 Sum_probs=199.7
Q ss_pred ccccCCCCHHH--HHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC
Q 007381 74 VSIEDVRDVEE--LQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFG 140 (605)
Q Consensus 74 ~~ied~~d~eE--~~~l~efRq~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~ 140 (605)
.+.+++++.++ .++|++||+||.++++++ ..+|| .+|+||||||+||+++|+++|.++++||+.++
T Consensus 46 ~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~ 124 (316)
T 3hx3_A 46 KAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 124 (316)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc
Confidence 34455664443 689999999999999875 34566 59999999999999999999999999999997
Q ss_pred CCccccccchHHHHHHHhc-cCcccccCCCCCCcEEEEecCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhChhhhhhh
Q 007381 141 VDTIMEDFEFKEINEVLSY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAA 219 (605)
Q Consensus 141 ~d~i~~d~~~~el~~v~k~-~p~~~~G~Dk~GRPV~i~rlg~~dp~kl~~~~t~~~~lr~~v~~~E~~~~~~~pacs~~~ 219 (605)
. ++.+..++++..+++. ++.+++|+|++||||+|+++|++|+++ .+.+++++++++.+|.++.. .
T Consensus 125 ~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~--------~ 190 (316)
T 3hx3_A 125 E--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLEN--------E 190 (316)
T ss_dssp G--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTS--------H
T ss_pred h--hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCC----CCHHHHHHHHHHHHHHHHhc--------c
Confidence 4 4445566666655544 556788999999999999999999987 48999999999999998853 2
Q ss_pred cCCCCcEEEEEECCCCCCCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCC
Q 007381 220 KRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN 299 (605)
Q Consensus 220 ~~~i~~~tiIiDl~G~sl~~~~~~~~~lik~i~kilq~~YPerL~~I~IVNaP~~f~~lw~ivKpFL~~kT~~KI~~lg~ 299 (605)
..+++|+++|+|++|++++|+.......++.++.++|++||+||+++||||+|++|..+|+++||||+++|++||+|+++
T Consensus 191 ~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~ 270 (316)
T 3hx3_A 191 ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD 270 (316)
T ss_dssp HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET
T ss_pred cCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC
Confidence 45688999999999999999865556789999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHHhhcCCCCCCcccCCCcCCC
Q 007381 300 KYQSKLLEIIDARELPEFLGGTCNCA 325 (605)
Q Consensus 300 ~~~~~L~e~Id~s~LP~eyGGt~~~~ 325 (605)
++ +.|.++||+++||.+|||++++.
T Consensus 271 ~~-~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 271 DL-SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp CC-HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred CH-HHHHhhCCHhhCcHhhCCCCCCc
Confidence 76 69999999999999999998753
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=4.5e-44 Score=363.02 Aligned_cols=228 Identities=24% Similarity=0.341 Sum_probs=194.3
Q ss_pred CCHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHH
Q 007381 80 RDVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVL 157 (605)
Q Consensus 80 ~d~eE~~~l~efRq~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~v~ 157 (605)
.++.|+++|++||+++.+++ ++|...|| .+|+|||||++||+++|.++|.++++||++++. +..++.++++....
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLL 80 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHH
Confidence 35778899999999998765 46777777 599999999999999999999999999999862 33334444444444
Q ss_pred hc-cCcccccCCCCCCcEEEEecCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhChhhhhhhcCCCCcEEEEEECCCCC
Q 007381 158 SY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (605)
Q Consensus 158 k~-~p~~~~G~Dk~GRPV~i~rlg~~dp~kl~~~~t~~~~lr~~v~~~E~~~~~~~pacs~~~~~~i~~~tiIiDl~G~s 236 (605)
.. ++.+++|+|++||||+|+++|++|+++ .+..++++++++.+|.++.. ...++.|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCC
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCccc----CCHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCC
Confidence 43 455678999999999999999999987 47889999999999987753 123467999999999999
Q ss_pred CCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcCCCCCCc
Q 007381 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316 (605)
Q Consensus 237 l~~~~~~~~~lik~i~kilq~~YPerL~~I~IVNaP~~f~~lw~ivKpFL~~kT~~KI~~lg~~~~~~L~e~Id~s~LP~ 316 (605)
++|+++.....++.++.++|++||++|+++||||+|++|+.+|++++|||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99987666788999999999999999999999999999999999999999999999999999888899999999 99999
Q ss_pred ccCCCcC
Q 007381 317 FLGGTCN 323 (605)
Q Consensus 317 eyGGt~~ 323 (605)
+|||++.
T Consensus 228 ~yGG~~~ 234 (262)
T 1r5l_A 228 EYGGEEF 234 (262)
T ss_dssp GGTCSSC
T ss_pred hhCCCCC
Confidence 9999964
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.08 E-value=9e-11 Score=119.12 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=108.7
Q ss_pred ccCcccccCCCCCCcEEEEecCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhChhhhhhhcCCCCcEEEEEECCCCCCC
Q 007381 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLK 238 (605)
Q Consensus 159 ~~p~~~~G~Dk~GRPV~i~rlg~~dp~kl~~~~t~~~~lr~~v~~~E~~~~~~~pacs~~~~~~i~~~tiIiDl~G~sl~ 238 (605)
....+..|.|++||||+++.+.+++... .+++.++.|.+..++... -...++|+|+.|++..
T Consensus 10 ~~ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~~~~ 71 (256)
T 3pg7_A 10 LSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPS 71 (256)
T ss_dssp HTSEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGG
T ss_pred cCCEEEcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCCCcc
Confidence 3344455899999999999999998866 478888877776666443 2468999999999987
Q ss_pred CcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHH-HHhcCChhhhccEEEeCCCchhHHHhhcCCCCC
Q 007381 239 NFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (605)
Q Consensus 239 ~~~~~~~~lik~i~kilq~~YPerL~~I~IVNaP~~f~~lw~i-vKpFL~~kT~~KI~~lg~~~~~~L~e~Id~s~L 314 (605)
+... ..+++.+..++...|...|+++||+|++++|+..|.. .++|.+.+...|++++++ .++|.++|+.++|
T Consensus 72 n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 72 NRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp GCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred cCCc--HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 6553 6789999999999999999999999999999977665 456666688899999966 4899999987765
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.85 E-value=1.3e-09 Score=112.48 Aligned_cols=131 Identities=14% Similarity=0.157 Sum_probs=98.5
Q ss_pred CcccccCCCCCCcEEEEecCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhChhhhhhhcCCCCcEEEEEECCCCCCCCc
Q 007381 161 PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF 240 (605)
Q Consensus 161 p~~~~G~Dk~GRPV~i~rlg~~dp~kl~~~~t~~~~lr~~v~~~E~~~~~~~pacs~~~~~~i~~~tiIiDl~G~sl~~~ 240 (605)
..+..|.|++||||+++.+++++... .+.+.++-|.+..++... -...++|+|+.|++..+-
T Consensus 31 ~f~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~ 92 (290)
T 3peg_A 31 IFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNR 92 (290)
T ss_dssp TEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGC
T ss_pred eEEEeccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCC
Confidence 33445889999999999999998765 477777766665555433 247999999999998765
Q ss_pred chhHHHHHHHHHHHhccccccccceEEEEecChHHHHHH-HHHHhcCChhhhccEEEeCCCchhHHHhhcCCCC
Q 007381 241 SKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARE 313 (605)
Q Consensus 241 ~~~~~~lik~i~kilq~~YPerL~~I~IVNaP~~f~~lw-~ivKpFL~~kT~~KI~~lg~~~~~~L~e~Id~s~ 313 (605)
.. .++++.+..++...|+..++++||+|++++|+..+ ...++|.+.+.-.|+.+++.. ..|..+++.++
T Consensus 93 p~--~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~ 162 (290)
T 3peg_A 93 FK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQ 162 (290)
T ss_dssp CC--HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC---------
T ss_pred Ch--HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHH
Confidence 43 67899999999999999999999999999998754 566788888889999998663 55888888775
No 8
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=72.24 E-value=1 Score=30.88 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCC
Q 007381 528 KRLSELEEKVDTLQAK 543 (605)
Q Consensus 528 ~r~~~lEekv~~L~~K 543 (605)
+||..||+||.+|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999888543
No 9
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=72.22 E-value=1 Score=30.83 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCC
Q 007381 528 KRLSELEEKVDTLQAK 543 (605)
Q Consensus 528 ~r~~~lEekv~~L~~K 543 (605)
+||..||+||.+|-.+
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 4788899999887643
No 10
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=71.86 E-value=4.6 Score=27.44 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 007381 529 RLSELEEKVDTLQA 542 (605)
Q Consensus 529 r~~~lEekv~~L~~ 542 (605)
||..||+||.+|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 68889999988754
No 11
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=70.32 E-value=5.2 Score=27.37 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 007381 528 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDAL 565 (605)
Q Consensus 528 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaL 565 (605)
+||..||+||.+|-.+ |+ -|.+-|.|.++|
T Consensus 1 eRMnQLE~kVEeLl~~-------n~-~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXK-------NX-HLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-------hh-hHHHHHHHHHHH
Confidence 4889999999887543 32 344555555544
No 12
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=68.22 E-value=5.4 Score=27.33 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhcC
Q 007381 529 RLSELEEKVDTLQA 542 (605)
Q Consensus 529 r~~~lEekv~~L~~ 542 (605)
||..||+||.+|-.
T Consensus 2 RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 2 RMKQIEDKGEEILS 15 (34)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 78899999987743
No 13
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=68.05 E-value=7.6 Score=26.37 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcC
Q 007381 529 RLSELEEKVDTLQA 542 (605)
Q Consensus 529 r~~~lEekv~~L~~ 542 (605)
||..||+||.+|-.
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68889999987754
No 14
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=68.01 E-value=7.6 Score=26.51 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcC
Q 007381 528 KRLSELEEKVDTLQA 542 (605)
Q Consensus 528 ~r~~~lEekv~~L~~ 542 (605)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 588999999988754
No 15
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=64.32 E-value=20 Score=32.59 Aligned_cols=68 Identities=25% Similarity=0.390 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007381 520 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 590 (605)
Q Consensus 520 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 590 (605)
-..+..+..++++|+.+|+....| +.||| |||.--+=+.|+||.+ +-..+|+ ++-+=.-++++|
T Consensus 33 ~~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~L 105 (142)
T 3a8y_C 33 HKAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYL 105 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHH
Confidence 346788999999999999999777 56774 7999999999999887 4455554 455556677888
Q ss_pred HHHH
Q 007381 591 DRQE 594 (605)
Q Consensus 591 e~~k 594 (605)
|.++
T Consensus 106 D~k~ 109 (142)
T 3a8y_C 106 DLKS 109 (142)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8755
No 16
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=64.19 E-value=13 Score=31.72 Aligned_cols=68 Identities=18% Similarity=0.372 Sum_probs=49.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 007381 518 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLA 588 (605)
Q Consensus 518 ~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~a 588 (605)
..-..+..+...+.+|+..|+.+..++ .||| |||.--+=.+|+||.| +-..+|++ +-+=.-+++
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~ 93 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILE 93 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHH
Confidence 445568899999999999999999874 5674 7899999999999887 54555543 333344555
Q ss_pred HHHH
Q 007381 589 YIDR 592 (605)
Q Consensus 589 yie~ 592 (605)
+||.
T Consensus 94 ~LD~ 97 (99)
T 1m7k_A 94 KLEK 97 (99)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.25 E-value=7.1 Score=26.60 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhc
Q 007381 529 RLSELEEKVDTLQ 541 (605)
Q Consensus 529 r~~~lEekv~~L~ 541 (605)
||..||+||.+|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 6788899988774
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.51 E-value=12 Score=25.95 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhc
Q 007381 528 KRLSELEEKVDTLQ 541 (605)
Q Consensus 528 ~r~~~lEekv~~L~ 541 (605)
+||..||.||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 46778888887664
No 19
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.34 E-value=43 Score=27.73 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 528 KRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 593 (605)
Q Consensus 528 ~r~~~lEekv~~L~~KP~~mP----~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 593 (605)
+|-.+|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+.+
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777788888877655554 579999999999999999887665554555455666666666543
No 20
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=59.14 E-value=30 Score=28.87 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007381 520 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 590 (605)
Q Consensus 520 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 590 (605)
-..+..+...+.+|+..|+....| +.||| |||.--+=.+|++|.| +-..+|+. +-+=.-++++|
T Consensus 10 ~~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~L 82 (87)
T 1m62_A 10 IKKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHH
Confidence 346788889999999999999987 46674 7899999999999887 55555543 33334455666
Q ss_pred HH
Q 007381 591 DR 592 (605)
Q Consensus 591 e~ 592 (605)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 21
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.45 E-value=58 Score=26.33 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 528 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 590 (605)
Q Consensus 528 ~r~~~lEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 590 (605)
+|...|=+.+..|.+=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+--..+.+|-+-|
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777776543322 489999999999999999887776555544444444444433
No 22
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=53.38 E-value=25 Score=24.37 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 007381 528 KRLSELEEKVDTLQAK 543 (605)
Q Consensus 528 ~r~~~lEekv~~L~~K 543 (605)
+||..||+||.+|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5788899999887543
No 23
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.47 E-value=20 Score=28.39 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007381 78 DVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (605)
Q Consensus 78 d~~d~eE~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (605)
.+...+..+++++|++.. | ..|. ..+..-|+++++|++.|++.|-++
T Consensus 12 ~~~~~~~~~~v~~L~~MF---P----~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 12 QVRRLEFNQAMDDFKTMF---P----NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCCSHHHHHHHHHHC---S----SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHC---C----CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 333344467888888876 2 2344 478889999999999999988765
No 24
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.02 E-value=62 Score=25.37 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 007381 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (605)
Q Consensus 79 ~~d~eE~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (605)
-.+..+.+.|.+|..... ..|......||...+||++.|+..+-
T Consensus 13 ~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 13 DLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 346677788999998772 12445789999999999999987764
No 25
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=49.60 E-value=25 Score=24.11 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCC
Q 007381 528 KRLSELEEKVDTLQAK 543 (605)
Q Consensus 528 ~r~~~lEekv~~L~~K 543 (605)
+||..||.||.+|.+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4788899999887654
No 26
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=45.55 E-value=24 Score=27.23 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007381 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (605)
Q Consensus 86 ~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (605)
+.+++|++.. | ..|. ..+-.-|++++.|++.|+..|-++
T Consensus 11 e~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5677777765 3 2344 488999999999999999998654
No 27
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.87 E-value=96 Score=23.25 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007381 551 KEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 596 (605)
Q Consensus 551 KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 596 (605)
.++-+...=.+++.++.++..+|..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788899999999999999999999999999888654
No 28
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=41.54 E-value=61 Score=28.22 Aligned_cols=68 Identities=18% Similarity=0.403 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007381 520 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 590 (605)
Q Consensus 520 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 590 (605)
-..+..+...+.+|+..|+....++ .||| |||.--+=++|+||.| +-..+|+ ++-+=.-++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 4567888888999999999998876 6774 7899999999999887 4445544 344445567777
Q ss_pred HHHH
Q 007381 591 DRQE 594 (605)
Q Consensus 591 e~~k 594 (605)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7654
No 29
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=40.79 E-value=40 Score=28.79 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007381 521 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAEL----IATKKALHEALMRQEDLLAYID 591 (605)
Q Consensus 521 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EK-----Ee~L~aa~~RvdaLE~eL----~~TKKaL~~al~kQ~El~ayie 591 (605)
..+..+...+.+|+..|.....|+ .|| +|||.--+=++|+||.|= -..+|+ ++-+=.-++++||
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~---~Vk~iQ~~l~~LD 90 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLS----DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKR---AAQETERLLKELE 90 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCT----TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 467888889999999999998887 355 488888899999998763 333333 3333345666666
Q ss_pred HH
Q 007381 592 RQ 593 (605)
Q Consensus 592 ~~ 593 (605)
.+
T Consensus 91 ~k 92 (99)
T 1ugo_A 91 QN 92 (99)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.37 E-value=71 Score=25.84 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 523 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 585 (605)
Q Consensus 523 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~E 585 (605)
.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||+.+.-.|.++..+-++
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666655332 3456667777789999999999999999888877554
No 31
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.18 E-value=1.8e+02 Score=26.41 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=50.9
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 519 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 590 (605)
Q Consensus 519 ~~~~~~~~~~r~--------~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 590 (605)
+.+.+..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666655665 6777777777 3322244444 58999999999999999999999999999988
Q ss_pred HHHH
Q 007381 591 DRQE 594 (605)
Q Consensus 591 e~~k 594 (605)
+..-
T Consensus 123 ~~~l 126 (151)
T 1yke_B 123 DSLI 126 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 32
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=38.98 E-value=2.1e+02 Score=26.38 Aligned_cols=69 Identities=9% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 515 PSLTEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 594 (605)
Q Consensus 515 ~~~~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 594 (605)
+.+.+.+++...+++|++|+..+..+ |..+|+.+.||+.=.++. .+..+...---|..|.+|.+..+
T Consensus 10 ~~i~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~--~~~l~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 10 VIVADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQK--SAPLLARRKELEDGVATFATLNK 76 (171)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34577888999999999999999876 456788888888655444 33445555566778889998886
Q ss_pred Hh
Q 007381 595 EA 596 (605)
Q Consensus 595 ~~ 596 (605)
..
T Consensus 77 ~e 78 (171)
T 2p2u_A 77 TE 78 (171)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=38.10 E-value=1.1e+02 Score=31.06 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCCCCchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 007381 531 SELEEKVDTLQAKPSEMPYE-----KEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQEE 595 (605)
Q Consensus 531 ~~lEekv~~L~~KP~~mP~E-----KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k-Q~El~ayie~~k~ 595 (605)
+++++-+..+.-..-.+|.+ =.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+....
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888889953 45888999999999999999999999999888 6777776666653
No 34
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.71 E-value=81 Score=24.20 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007381 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (605)
Q Consensus 81 d~eE~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (605)
...+.+.|.+|..... .+ ......||.+.+||++.|+..+
T Consensus 12 s~~~~e~i~qF~~iTg--------~~-~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------AS-ESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CC-HHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 4556678899987651 12 3478999999999999998776
No 35
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=34.68 E-value=59 Score=27.97 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007381 560 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 599 (605)
Q Consensus 560 ~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 599 (605)
-||-+|.-||--|||.|+.|-..--|--|-|.++-++.|+
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfq 134 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 4899999999999999999988777766666665555544
No 36
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=34.34 E-value=98 Score=27.24 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCch--------------hHHHHHHHHHHHHHHHHH----------------HHHHHH
Q 007381 524 SSVTKRLSELEEKVDTLQAKPSEMPY--------------EKEELLHAAVCRVDALEA----------------ELIATK 573 (605)
Q Consensus 524 ~~~~~r~~~lEekv~~L~~KP~~mP~--------------EKEe~L~aa~~RvdaLE~----------------eL~~TK 573 (605)
.+++.+|..||.....|..+-.++-. +.++|.+.--.|+.-|++ ++...+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 45556666666666666555443322 233444444455555553 678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 007381 574 KALHEALMRQEDLLAYIDRQEEAK 597 (605)
Q Consensus 574 KaL~~al~kQ~El~ayie~~k~~k 597 (605)
|.|+.-+.+|++++.+.|+-|.-+
T Consensus 85 keLd~~ik~qekiIdnFE~ik~lr 108 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543
No 37
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=34.03 E-value=92 Score=29.42 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=16.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Q 007381 546 EMPYEKEELLHAAVCRVDALEAELIA 571 (605)
Q Consensus 546 ~mP~EKEe~L~aa~~RvdaLE~eL~~ 571 (605)
++||=.++++..-+.+|+.+++++.+
T Consensus 20 ~L~py~~dlv~~v~~ei~~~~~~~~~ 45 (196)
T 2q9q_C 20 QLPAFNEDGLRQVLEEMKALYEQNQS 45 (196)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665544
No 38
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=33.50 E-value=69 Score=22.58 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007381 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (605)
Q Consensus 84 E~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (605)
+.+.|.+|..... . + ......||.+.+||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg-------~-~-~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG-------A-E-EDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC-------C-C-HHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC-------c-C-HHHHHHHHHHcCCCHHHHHHHH
Confidence 4467888886541 1 2 3578999999999999998765
No 39
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=33.14 E-value=29 Score=32.33 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=42.5
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHH-HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 007381 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQA-VDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (605)
Q Consensus 50 ~~~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~eE~~~-l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~ 128 (605)
...+++.-|+.|| .+..+-.-.++++.++++.+. ....++.+......+ ......-+.+||..++|+.+-+...
T Consensus 85 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~v 159 (177)
T 3e3v_A 85 GPKVIKLNLSKKG----IDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTI 159 (177)
T ss_dssp CHHHHHHHHHTTT----CCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4456778888887 333333333344433333333 333333333222111 0011235899999999999998888
Q ss_pred HHHH
Q 007381 129 WAEM 132 (605)
Q Consensus 129 l~~~ 132 (605)
+...
T Consensus 160 l~~l 163 (177)
T 3e3v_A 160 IQEL 163 (177)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 7653
No 40
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.67 E-value=31 Score=24.78 Aligned_cols=16 Identities=50% Similarity=0.696 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 007381 526 VTKRLSELEEKVDTLQ 541 (605)
Q Consensus 526 ~~~r~~~lEekv~~L~ 541 (605)
+=.|.+|||++|.+|+
T Consensus 15 le~~naeLEervstLq 30 (42)
T 2oqq_A 15 LENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555554
No 41
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=32.30 E-value=68 Score=28.26 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007381 560 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 599 (605)
Q Consensus 560 ~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 599 (605)
-||-+|.-||--|||.|+.|-..--|--|-|.++-++.|+
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfq 158 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 4899999999999999999988777777777666555544
No 42
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=29.21 E-value=94 Score=25.64 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007381 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (605)
Q Consensus 85 ~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (605)
..+|+++|..|-. ...| ..|.+-....+||+++|+..+-+-
T Consensus 35 ~SCLd~iR~VlGd------sV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------cCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3678999998832 2345 478888899999999999887543
No 43
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.71 E-value=3.1e+02 Score=24.25 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=49.9
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 519 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 590 (605)
Q Consensus 519 ~~~~~~~~~~r~--------~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 590 (605)
+.+.+..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345565555555 6777777777 3322244443 58999999999999999999999999999988
Q ss_pred HHH
Q 007381 591 DRQ 593 (605)
Q Consensus 591 e~~ 593 (605)
+..
T Consensus 123 ~~~ 125 (132)
T 1ykh_B 123 DSM 125 (132)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 44
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.58 E-value=73 Score=27.03 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 533 LEEKVDTLQAKPSEM--PYEKEELLHAAVCRVDALEAELIATKKALHEA 579 (605)
Q Consensus 533 lEekv~~L~~KP~~m--P~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~a 579 (605)
|+.+..+....|. | |.--|..|+.+-.+|+.|++||-+=...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667766 7 77779999999999999999999988888776
No 45
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.51 E-value=1.2e+02 Score=24.28 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007381 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (605)
Q Consensus 80 ~d~eE~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (605)
...+-...|.++++.+ |+. .+ .++.+.|..++.|+|.+...|-+
T Consensus 9 ~~~~l~s~I~qV~DLf------PdL-G~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLL------PDL-GE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHC------CSS-CH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHc------ccC-CH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 3455567888888776 332 44 38999999999999999988754
No 46
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=26.76 E-value=44 Score=23.84 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007381 556 HAAVCRVDALEAELIATKKA 575 (605)
Q Consensus 556 ~aa~~RvdaLE~eL~~TKKa 575 (605)
.+|++|.+.+|+++-.+||.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999998873
No 47
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=26.35 E-value=1.5e+02 Score=21.50 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 007381 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (605)
Q Consensus 85 ~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~ 128 (605)
.+.|.+|...-- .+|......||.+.+||++.|+..
T Consensus 6 de~ia~F~~iTG--------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 6 EMILADFQACTG--------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHC--------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 467888888551 245346789999999999999753
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=25.63 E-value=1.2e+02 Score=25.62 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 526 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 585 (605)
Q Consensus 526 ~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~E 585 (605)
.+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 21 a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666654442 2466667766789999999999999888888766554
No 49
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.59 E-value=44 Score=30.57 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=41.2
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007381 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (605)
Q Consensus 50 ~~~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~eE~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (605)
...++++.|+.|| .+..+-.-.++++.+++...+...++..+.. ..+.......-+.+||..++|+.+.+...+
T Consensus 83 G~~~I~~eL~~KG----I~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 83 GPLHIRAELGTHG----LDSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3457888888888 3433333333444333333344444444321 112111122358999999999999887765
Q ss_pred H
Q 007381 130 A 130 (605)
Q Consensus 130 ~ 130 (605)
.
T Consensus 157 ~ 157 (162)
T 3dfg_A 157 R 157 (162)
T ss_dssp T
T ss_pred h
Confidence 4
No 50
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=25.53 E-value=1.3e+02 Score=19.81 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 551 KEELLHAAVCRVDALEAELIATKKALHE 578 (605)
Q Consensus 551 KEe~L~aa~~RvdaLE~eL~~TKKaL~~ 578 (605)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4666788888999999999999988865
No 51
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.06 E-value=1.6e+02 Score=21.98 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007381 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (605)
Q Consensus 86 ~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (605)
..|++|++.= ..|.+..++-|++.++|+++|++.|-..
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666543 2343456899999999999999887653
No 52
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=24.71 E-value=1e+02 Score=20.89 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 007381 109 HMMLRFLKARKFDIDKAKHMW 129 (605)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l 129 (605)
....+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 356889999999999998754
No 53
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=23.41 E-value=95 Score=23.78 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCch----hHHHHHHHHHHHHHHHHHHHH
Q 007381 528 KRLSELEEKVDTLQAKPSEMPY----EKEELLHAAVCRVDALEAELI 570 (605)
Q Consensus 528 ~r~~~lEekv~~L~~KP~~mP~----EKEe~L~aa~~RvdaLE~eL~ 570 (605)
+|+.+|-+-+..|..--|.+|. -|=+.|..|+.=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999888777774 588999999999999987664
No 54
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.29 E-value=1.4e+02 Score=22.68 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007381 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (605)
Q Consensus 85 ~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (605)
...|++|++.= ..|.+..++-|++.++|+++|++.|-.
T Consensus 18 ~~qi~~L~~MG---------F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMG---------FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35566666542 233346799999999999999988754
No 55
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.08 E-value=1e+02 Score=24.75 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 528 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKK 574 (605)
Q Consensus 528 ~r~~~lEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdaLE~eL~~TKK 574 (605)
+|...|=+.+..|.+--|.+| ..|-.+|..|+.=|+.|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666654433332 47999999999999999988765443
No 56
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.64 E-value=1.7e+02 Score=23.00 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=30.7
Q ss_pred CCCCHHH--HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007381 78 DVRDVEE--LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (605)
Q Consensus 78 d~~d~eE--~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (605)
+...+++ ..+|++|++.= ..|...-++-|++.+.|+++|++.|-.
T Consensus 11 ~~~~pe~~y~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 11 SLQAPEVRFSKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp SSCCHHHHTHHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3444444 45677776543 234346699999999999999887754
No 57
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.31 E-value=1.4e+02 Score=21.39 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 550 EKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLA 588 (605)
Q Consensus 550 EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~a 588 (605)
-|||||+. ++||| .|.++|.+=+.+-=.||.||-+
T Consensus 3 tk~~l~qk-I~kVd---rEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 3 SKEELIQN-MDRVD---REITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSSHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 47777763 55555 7888998888888888887755
No 58
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=22.29 E-value=1.1e+02 Score=25.85 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchh----HHHHHHHHHHHHHHHHHHHHH
Q 007381 527 TKRLSELEEKVDTLQAKPSEMPYE----KEELLHAAVCRVDALEAELIA 571 (605)
Q Consensus 527 ~~r~~~lEekv~~L~~KP~~mP~E----KEe~L~aa~~RvdaLE~eL~~ 571 (605)
..||..|-+-++.|...-|.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999888888887 789999999999999887754
No 59
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.04 E-value=1.5e+02 Score=23.76 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 007381 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (605)
Q Consensus 85 ~~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (605)
...|++|++.= ..|.+..++-|++.++|+++|++.|-
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35566776643 23334679999999999999988775
No 60
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=21.14 E-value=3.3e+02 Score=32.24 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhc------CCCCCCchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007381 526 VTKRLSELEEKVDTLQ------AKPSEMPYEK--EELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAY 589 (605)
Q Consensus 526 ~~~r~~~lEekv~~L~------~KP~~mP~EK--Ee~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ay 589 (605)
..+-.++||..+..|+ ++|+-+|++- -+-|+.++.+....|+|- -.+|.+.+.||+.|..-
T Consensus 819 r~~ek~~Le~l~~~iqtklrl~~r~~~~p~~gl~~~dL~~~W~~Le~ae~eR---e~~L~~el~Rqe~L~~L 887 (1010)
T 1g8x_A 819 KGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH---AEALRIELKRQKKIAVL 887 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCCCCCTTCSHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3444455555444444 5577778751 345888887776666664 47999999999888643
No 61
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=20.37 E-value=48 Score=31.97 Aligned_cols=73 Identities=7% Similarity=-0.007 Sum_probs=40.7
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHH-HHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHcCCCHHHH
Q 007381 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQ-AVDAFRQSLIMDELLPERHDD---YHMMLRFLKARKFDIDKA 125 (605)
Q Consensus 50 ~~~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~eE~~-~l~efRq~L~~~~~Lp~~~dD---~~~LLRFLrArkfDvekA 125 (605)
...+++..|+.|| .+..+-.-.++++.++++.+ +....+..+..... .++ ..-+.|||..++|+.+.+
T Consensus 128 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~----~~~~~~k~K~~~~L~rrGFs~~~I 199 (221)
T 3d5l_A 128 GPGIIRQHLRQKG----IGESDIDDALTQFTPEVQAELAKKLALKLFRRYRN----QPERRREQKVQQGLTTKGFSSSVY 199 (221)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccC----CChHHHHHHHHHHHHhCCCCHHHH
Confidence 3456777888777 33333222334443333333 33344444432221 122 247899999999999988
Q ss_pred HHHHH
Q 007381 126 KHMWA 130 (605)
Q Consensus 126 ~~~l~ 130 (605)
...+.
T Consensus 200 ~~vl~ 204 (221)
T 3d5l_A 200 EMIKD 204 (221)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66653
No 62
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=20.12 E-value=2.5e+02 Score=22.88 Aligned_cols=39 Identities=8% Similarity=0.174 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHH
Q 007381 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDK 124 (605)
Q Consensus 86 ~~l~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvek 124 (605)
.-+.+|-+++..+...|...+|+..|.+||....+|-+.
T Consensus 20 dp~g~LA~~i~~D~~FPK~~~d~~eIs~Yle~~~~~~~~ 58 (80)
T 2kvs_A 20 TPFGILAEHVSEDKAFPRLEERHQVIRAYVMSNYTDHQL 58 (80)
T ss_dssp CHHHHHHHHHHTSCCCCSSCSSSHHHHHHHHHHCCCHHH
T ss_pred ChHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 446788888888888999989999999999998888443
No 63
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=20.06 E-value=46 Score=22.77 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 007381 524 SSVTKRLSELEEKVDTLQAK 543 (605)
Q Consensus 524 ~~~~~r~~~lEekv~~L~~K 543 (605)
.+++-||-.+|++|..+..|
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~K 25 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHK 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 57788999999999887655
Done!