BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007383
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 8/232 (3%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--PSSFRKLS 113
L N++L + +A++GPSG+GKSTLL ++ PT+G I + + P R +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV- 77
Query: 114 AYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG 173
V Q+ A P +TVY+ F L +ID + + L + L + R LSG
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-RYPWQLSG 136
Query: 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSF 233
G+++RV+I +L+ +P VLLLDEP S LD+ V LK + T + H +
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA- 195
Query: 234 KILSTIDRILLLSKGSVVHHGTLASL---ETFLLSSGFSVPPQLNALEYTME 282
+ L+ DRI ++ +G ++ GT + + GF P +N +E +E
Sbjct: 196 EALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLGNPPMNFVEAKVE 247
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSF---- 109
Y LKNV+L + ++I+GPSG+GKST+L+I+ PT G + +++ IK +
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN--IKTNDLDDDE 76
Query: 110 -----RKLSAYVPQHDACIPSLTVYET----FLFSARLLVPKTSQIDTIITVLLTELRLA 160
R +V Q IP LT E +F R + + + L ++A
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL----KMA 132
Query: 161 HLASTRLAH---NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSIS 217
L H LSGG+++RV+I +L ++P ++L D+PT LDS++ +MQ LK ++
Sbjct: 133 ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN 192
Query: 218 ASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260
+TV++ H + +RI+ L G V L +
Sbjct: 193 EEDGKTVVVVTH--DINVARFGERIIYLKDGEVEREEKLRGFD 233
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSF---- 109
Y LKNV+L + ++I+GPSG+GKST+L+I+ PT G + +++ IK +
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN--IKTNDLDDDE 76
Query: 110 -----RKLSAYVPQHDACIPSLTVYET----FLFSARLLVPKTSQIDTIITVLLTELRLA 160
R +V Q IP LT E +F R + + + L ++A
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL----KMA 132
Query: 161 HLASTRLAH---NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSIS 217
L H LSGG+++RV+I +L ++P ++L D+PT LDS++ +MQ LK ++
Sbjct: 133 ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 218 ASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260
+TV++ H + +RI+ L G V L +
Sbjct: 193 EEDGKTVVVVTH--DINVARFGERIIYLKDGEVEREEKLRGFD 233
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 8/226 (3%)
Query: 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--PSSFRKLSA 114
K+++L + + + VGPSG GKSTLL +++ + T+G + + + P + R +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV-G 78
Query: 115 YVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174
V Q A P L+V E F +L K I+ + + L+LAHL R LSGG
Sbjct: 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGG 137
Query: 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFK 234
+R+RV+IG +L+ +P+V LLDEP S LD+ + + + RT+I H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVE 196
Query: 235 ILSTIDRILLLSKGSVVHHGTLASLETFLLS---SGFSVPPQLNAL 277
++ D+I++L G V G L + +GF P++N L
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFL 242
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 8/226 (3%)
Query: 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--PSSFRKLSA 114
K+++L + + + VGPSG GKSTLL +++ + T+G + + + P + R +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV-G 78
Query: 115 YVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174
V Q A P L+V E F +L K I+ + + L+LAHL R LSGG
Sbjct: 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGG 137
Query: 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFK 234
+R+RV+IG +L+ +P+V LLDEP S LD+ + + + RT+I H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVE 196
Query: 235 ILSTIDRILLLSKGSVVHHGTLASLETFLLS---SGFSVPPQLNAL 277
++ D+I++L G V G L + +GF P++N L
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFL 242
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLS 113
Y+LK+V+ +I +VG +G+GK+TLL IL+ + G I L+ SP P RK
Sbjct: 25 YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA-GEIFLDGSPADPFLLRKNV 83
Query: 114 AYVPQHDAC-IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLS 172
YV Q+ + I TV E FS ++ S++ I +L + L+ LA+ NLS
Sbjct: 84 GYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAAD-PLNLS 142
Query: 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232
GG+++R++I L D L LDEP S LD S + Q L+S+ + + +IL H+
Sbjct: 143 GGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK-NEGKGIILVTHELE 201
Query: 233 FKILSTIDRILLLSKGSVVHHGT 255
+ L +D IL +S G++ G+
Sbjct: 202 Y--LDDMDFILHISNGTIDFCGS 222
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 8/226 (3%)
Query: 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--PSSFRKLSA 114
K+++L + + + VGPSG GKSTLL +++ + T+G + + + P + R +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV-G 78
Query: 115 YVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174
V Q A P L+V E F +L K I+ + + L+LAHL R LSGG
Sbjct: 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGG 137
Query: 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFK 234
+R+RV+IG +L+ +P+V LLD+P S LD+ + + + RT+I H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVE 196
Query: 235 ILSTIDRILLLSKGSVVHHGTLASLETFLLS---SGFSVPPQLNAL 277
++ D+I++L G V G L + +GF P++N L
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFL 242
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 12/215 (5%)
Query: 44 FEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103
E+ S K + L N+SL + I+GP+GAGK+ L++++ P +G ILL+
Sbjct: 4 IESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD 63
Query: 104 IKPSSFRKLS-AYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLT--ELRLA 160
+ S K A+V Q+ + P + V + F R+ +I VL T +L++
Sbjct: 64 VTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM-----KKIKDPKRVLDTARDLKIE 118
Query: 161 HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASR 220
HL R LSGGE++RV++ +L+ +P +LLLDEP S LD R+ N + L +
Sbjct: 119 HLLD-RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177
Query: 221 HRTVILSIH-QPSFKILSTIDRILLLSKGSVVHHG 254
TV+ H Q +I++ DRI ++ G ++ G
Sbjct: 178 KLTVLHITHDQTEARIMA--DRIAVVMDGKLIQVG 210
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 114/240 (47%), Gaps = 20/240 (8%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN----SSPIK----PS 107
+K++SL + L ++GPSG GK+T L ++ PT G I + + P K P
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 108 SFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLAHLASTR 166
R + A V Q A P TVY+ F +L VPK +ID + + L L L + R
Sbjct: 82 KERDV-AXVFQSYALYPHXTVYDNIAFPLKLRKVPK-QEIDKRVREVAEXLGLTELLN-R 138
Query: 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVIL 226
LSGG+R+RV++G +++ P V L DEP S LD++ LK + T I
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY 198
Query: 227 SIHQPSFKILSTIDRILLLSKGSVVHHGT-----LASLETFLLSSGFSVPPQLNALEYTM 281
H + + DRI + +KG + GT + TF+ +GF P N L+ T+
Sbjct: 199 VTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFV--AGFIGSPPXNFLDATI 255
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 5/208 (2%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI--KPSSFRKL 112
ILK +S +I ++GP+GAGK+T L I+S P++G + + + +P RKL
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 113 SAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLS 172
+Y+P+ ++ E F A +S+I+ ++ L R++ S
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS-TYS 148
Query: 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232
G R++ I +L+ +P + +LDEPTSGLD +A V + LK AS+ IL
Sbjct: 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK--QASQEGLTILVSSHNM 206
Query: 233 FKILSTIDRILLLSKGSVVHHGTLASLE 260
++ DRI L+ G++V GT+ L+
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEELK 234
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 18/220 (8%)
Query: 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSF---- 109
Y LKNV+L + ++I GPSG+GKST L+I+ PT G + +++ IK +
Sbjct: 19 YALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDN--IKTNDLDDDE 76
Query: 110 -----RKLSAYVPQHDACIPSLTVYET----FLFSARLLVPKTSQIDTIITVLLTELRLA 160
R +V Q IP LT E +F R + + L L
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECL-KXAELE 135
Query: 161 HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASR 220
+ + LSGG+++RV+I +L ++P ++L DEPT LDS++ + Q LK ++
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEED 195
Query: 221 HRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260
+TV++ H + +RI+ L G V L +
Sbjct: 196 GKTVVVVTH--DINVARFGERIIYLKDGEVEREEKLRGFD 233
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 20/226 (8%)
Query: 46 ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105
A +P ILK +S + P Q LA+VGPSG GKST++ +L G I ++ S IK
Sbjct: 1085 AYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK 1144
Query: 106 ---PSSFRKLSAYVPQHDACIPSL---TVYETFLFSARLLVPKTSQIDTIITVLLTELRL 159
P R A V Q P+L ++ E ++ +Q++ + +
Sbjct: 1145 TLNPEHTRSQIAIVSQE----PTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFI 1200
Query: 160 AHLA---STRLAH---NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTL 213
A L TR+ LSGG+++R++I +L+ +P +LLLDE TS LD+ S V + L
Sbjct: 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL 1260
Query: 214 KSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
A RT I+ H+ + D I ++S G+++ GT L
Sbjct: 1261 D--RAREGRTCIVIAHR--LNTVMNADCIAVVSNGTIIEKGTHTQL 1302
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 24/219 (10%)
Query: 49 SKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSS 108
S+P IL+ ++L Q +A+VG SG GKST++ +L G I ++ ++ +
Sbjct: 427 SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN 486
Query: 109 F---RKLSAYVPQHDACIPSLTVYETFLFSAR-------LLVPKTSQIDTIITVLLTELR 158
RK A V Q A + T+ E + K + + I L
Sbjct: 487 LEFLRKNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYN 545
Query: 159 LAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISA 218
L R LSGG+++R++I +L+ +P +LLLDE TS LD+ S V Q L A
Sbjct: 546 T--LVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALD--KA 600
Query: 219 SRHRTVILSIHQPSFKILSTI---DRILLLSKGSVVHHG 254
++ RT I+ H+ LSTI D I+ G VV G
Sbjct: 601 AKGRTTIIIAHR-----LSTIRNADLIISCKNGQVVEVG 634
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 7/203 (3%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--PSSFRKLS 113
++ VS +++ ++GPSG+GK+T+L +++ PT G + + + P R +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV- 89
Query: 114 AYVPQHDACIPSLTVYETFLFSAR-LLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLS 172
V Q+ A +TVY+ F R VPK ++D + LL +RL A+ R H LS
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPK-DEMDARVRELLRFMRLESYAN-RFPHELS 147
Query: 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232
GG+++RV++ +L P VLL DEP + +D++ + ++ + T + H
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207
Query: 233 FKILSTIDRILLLSKGSVVHHGT 255
+ L DR+L+L +G+V GT
Sbjct: 208 -EALEVADRVLVLHEGNVEQFGT 229
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 11/204 (5%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLS- 113
ILK +SL+ + ++I+G SG+GKSTLL IL +PT G + L + ++ ++LS
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 114 ------AYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL 167
+V Q IP LT E + + + LL+EL L S R
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-RK 137
Query: 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILS 227
+ LSGGE++RV+I +L ++P +L DEPT LDS + VM I+ ++++
Sbjct: 138 PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMV 196
Query: 228 IHQPSFKILSTIDRILLLSKGSVV 251
H+ L+ R L + G VV
Sbjct: 197 THERELAELT--HRTLEMKDGKVV 218
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 50 KPPT-YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI---K 105
KP + IL N++L+ +++ IVG SG+GKSTL ++ P NG +L++ +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 106 PSSFRKLSAYVPQHDACI------------PSLTVYETFLFSARLLVPKTSQIDTIITVL 153
P+ R+ V Q + + P ++V E +++A+L
Sbjct: 72 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHD---------F 121
Query: 154 LTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212
++ELR + LSGG+R+R++I +L+++P +L+ DE TS LD S +M+
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ I + RTVI+ H+ S + DRI+++ KG +V G L
Sbjct: 182 MHKI--CKGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 50 KPPT-YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI---K 105
KP + IL N++L+ +++ IVG SG+GKSTL ++ P NG +L++ +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 106 PSSFRKLSAYVPQHDACI------------PSLTVYETFLFSARLLVPKTSQIDTIITVL 153
P+ R+ V Q + + P ++V E +++A+L
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHD---------F 127
Query: 154 LTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212
++ELR + LSGG+R+R++I +L+++P +L+ DE TS LD S +M+
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ I + RTVI+ H+ S + DRI+++ KG +V G L
Sbjct: 188 MHKI--CKGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 12/233 (5%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--PSSFRKLS 113
+ ++LT + L ++GPSG GK+T L +++ PT G I + P R +S
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 114 AYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG 173
V Q A P +TVYE F ++ +ID + L++ L + R LSG
Sbjct: 88 -MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSG 145
Query: 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSF 233
G+R+RV++ +++ +P VLL+DEP S LD++ + +K + T I H
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QV 204
Query: 234 KILSTIDRILLLSKGSVVHHGTLASLETFLLSSG-----FSVPPQLNALEYTM 281
+ ++ DRI ++++G ++ G+ E +L + F P++N LE ++
Sbjct: 205 EAMTMGDRIAVMNRGQLLQIGS--PTEVYLRPNSVFVATFIGAPEMNILEVSV 255
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 12/233 (5%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--PSSFRKLS 113
+ ++LT + L ++GPSG GK+T L +++ PT G I + P R +S
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 114 AYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG 173
V Q A P +TVYE F ++ +ID + L++ L + R LSG
Sbjct: 87 -MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSG 144
Query: 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSF 233
G+R+RV++ +++ +P VLL+DEP S LD++ + +K + T I H
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QV 203
Query: 234 KILSTIDRILLLSKGSVVHHGTLASLETFLLSSG-----FSVPPQLNALEYTM 281
+ ++ DRI ++++G ++ G+ E +L + F P++N LE ++
Sbjct: 204 EAMTMGDRIAVMNRGQLLQIGS--PTEVYLRPNSVFVATFIGAPEMNILEVSV 254
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 33/228 (14%)
Query: 50 KPPT-YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI---K 105
KP + IL N++L+ +++ IVG SG+GKSTL ++ P NG +L++ +
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 73
Query: 106 PSSFRKLSAYVPQHDACI------------PSLTVYETFLFSARLLVPKTSQIDTIITVL 153
P+ R+ V Q + + P ++V E +++A+L
Sbjct: 74 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHD---------F 123
Query: 154 LTELRLAH--LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ 211
++ELR + + + A LSGG+R+R++I +L+++P +L+ DE TS LD S +M+
Sbjct: 124 ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 212 TLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ I + RTVI+ H+ S + DRI+++ KG +V G L
Sbjct: 183 NMHKI--CKGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL-------NSSPIKPSS 108
L NV++ + I+GPSGAGK+T + I++ P+ G + N I P
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 109 FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLA 168
RK+ V Q A P+LT +E F + +I + + L + H+ +
Sbjct: 81 DRKI-GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFP 138
Query: 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSI 228
LSGG+++RV++ +L+ DP++LLLDEP S LD+R + +K + + T+++
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 229 HQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
H P+ I + DR+ +L KG +V G L
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 18/236 (7%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN----SSPIK----PS 107
++ +SL + + ++GPSG GK+T L +++ P+ G I + + P K P
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 108 SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL 167
R + A V Q A P +TVY+ F +L +ID + + L L L + R
Sbjct: 79 KDRDI-AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RK 136
Query: 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILS 227
LSGG+R+RV++G +++ P V L+DEP S LD++ + LK + T I
Sbjct: 137 PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV 196
Query: 228 IHQPSFKILSTIDRILLLSKGSVVHHGTLASL-----ETFLLSSGFSVPPQLNALE 278
H + ++ DRI ++++G + G+ + TF+ +GF P +N L+
Sbjct: 197 THD-QVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV--AGFIGSPPMNFLD 249
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 33/228 (14%)
Query: 50 KPPT-YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI---K 105
KP + IL N++L+ +++ IVG +G+GKSTL ++ P NG +L++ +
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 73
Query: 106 PSSFRKLSAYVPQHDACI------------PSLTVYETFLFSARLLVPKTSQIDTIITVL 153
P+ R+ V Q + + P ++V E +++A+L
Sbjct: 74 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHD---------F 123
Query: 154 LTELRLAH--LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ 211
++ELR + + + A LSGG+R+R++I +L+++P +L+ DE TS LD S +M+
Sbjct: 124 ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 212 TLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ I + RTVI+ H+ S + DRI+++ KG +V G L
Sbjct: 183 NMHKI--CKGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 50 KPPT-YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI---K 105
KP + IL N++L+ +++ IVG SG+GKSTL ++ P NG +L++ +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 106 PSSFRKLSAYVPQHDACI------------PSLTVYETFLFSARLLVPKTSQIDTIITVL 153
P+ R+ V Q + + P ++V E +++A+L
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHD---------F 127
Query: 154 LTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212
++ELR + LSGG+R+R++I +L+++P +L+ D+ TS LD S +M+
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ I + RTVI+ H+ S + DRI+++ KG +V G L
Sbjct: 188 MHKI--CKGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 5/202 (2%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAY 115
L+NVSL + L + G +G+GKSTLL I++ PT+G +L + K R+
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 84
Query: 116 VPQH-DACIPSLTVYETFLFSARLLVPKTSQIDTIITVL-LTELRLAHLASTRLAHNLSG 173
Q+ + + V++ F+ + P + + + L R+ LSG
Sbjct: 85 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSG 143
Query: 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSF 233
GE+RRV+I ++H+P +L+LDEP GLD ++++ ++ + +TVIL H
Sbjct: 144 GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK-TLGKTVILISHDIE- 201
Query: 234 KILSTIDRILLLSKGSVVHHGT 255
+++ +DR+++L KG V GT
Sbjct: 202 TVINHVDRVVVLEKGKKVFDGT 223
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 5/202 (2%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAY 115
L+NVSL + L + G +G+GKSTLL I++ PT+G +L + K R+
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 116 VPQH-DACIPSLTVYETFLFSARLLVPKTSQIDTIITVL-LTELRLAHLASTRLAHNLSG 173
Q+ + + V++ F+ + P + + + L R+ LSG
Sbjct: 83 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSG 141
Query: 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSF 233
GE+RRV+I ++H+P +L+LDEP GLD ++++ ++ + +TVIL H
Sbjct: 142 GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK-TLGKTVILISHDIE- 199
Query: 234 KILSTIDRILLLSKGSVVHHGT 255
+++ +DR+++L KG V GT
Sbjct: 200 TVINHVDRVVVLEKGKKVFDGT 221
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 26/248 (10%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS---SPIKPSSFRKL 112
L++VS T P Q LA+VGPSGAGKST+L +L ++G I ++ S + +S R
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129
Query: 113 SAYVPQHDACIPSLTVYETFLF----SARLLVPKTSQIDTIITVLLTELRLAHLASTRLA 168
VPQ D + + T+ + + + V +Q I ++
Sbjct: 130 IGVVPQ-DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERG 188
Query: 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSI 228
LSGGE++RV+I ++L P ++LLDE TS LD+ + + +L + A +RT I+
Sbjct: 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVA 246
Query: 229 HQPSFKILSTI---DRILLLSKGSVVHHGTLASLETFLLSSGFSVPPQLNALEYTMEILS 285
H+ LST+ D+IL++ G +V G + LLS G V + L+ E S
Sbjct: 247 HR-----LSTVVNADQILVIKDGCIVERGRHEA----LLSRG-GVYADMWQLQQGQEETS 296
Query: 286 QLHDDTKP 293
+ DTKP
Sbjct: 297 E---DTKP 301
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 10/211 (4%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL-------NSSPIKPSS 108
L NV++ + I+GPSGAGK+T + I++ P+ G + N I P
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 109 FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLA 168
RK+ V Q A P+LT +E F + +I + + L + H+ +
Sbjct: 81 DRKI-GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFP 138
Query: 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSI 228
LSG +++RV++ +L+ DP++LLLDEP S LD+R + +K + + T+++
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 229 HQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
H P+ I + DR+ +L KG +V G L
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 33/218 (15%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRK 111
IL+++S A P+ I+A GPSG GKST+ +L PT G I ++ PI ++R
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 112 LSAYVPQHDACIPSLTVYETF------------LFSARLLVPKTSQIDTIITVLLTELRL 159
+V Q D+ I + T+ E L+ L S ++ + L TE+
Sbjct: 77 QIGFVSQ-DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV-- 133
Query: 160 AHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISAS 219
+SGG+R+R++I + L +P +L+LDE T+ LDS S V + L S+
Sbjct: 134 -----GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--M 186
Query: 220 RHRTVILSIHQPSFKILSTI---DRILLLSKGSVVHHG 254
+ RT ++ H+ LSTI D+I + KG + G
Sbjct: 187 KGRTTLVIAHR-----LSTIVDADKIYFIEKGQITGSG 219
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 5/190 (2%)
Query: 71 IVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-SSFRKLSAYVPQHDACIPSLTVY 129
++GP+GAGKS L++++ P G + LN + I P R+ +VPQ A P L+VY
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 130 ETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDP 189
+ R + + D + + +L +AHL + A LSGGER+RV++ +L+ P
Sbjct: 89 RNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPAR-LSGGERQRVALARALVIQP 145
Query: 190 AVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249
+LLLDEP S +D ++ +M+ L+ + IL + + D + ++ G
Sbjct: 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQ-REFDVPILHVTHDLIEAAMLADEVAVMLNGR 204
Query: 250 VVHHGTLASL 259
+V G L L
Sbjct: 205 IVEKGKLKEL 214
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 31/227 (13%)
Query: 50 KPPT-YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI---K 105
KP + IL N++L+ +++ IVG SG+GKSTL ++ P NG +L++ +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 106 PSSFRKLSAYVPQHDACI------------PSLTVYETFLFSARLLVPKTSQIDTIITVL 153
P+ R+ V Q + + P ++V E +++A+L
Sbjct: 72 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHD---------F 121
Query: 154 LTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212
++ELR + LSGG+R+R++I +L+++P +L+ DE TS LD S +M+
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ I + RTVI I + DRI+++ KG +V G L
Sbjct: 182 MHKI--CKGRTVI--IIAARLSTVKNADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 31/227 (13%)
Query: 50 KPPT-YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI---K 105
KP + IL N++L+ +++ IVG SG+GKSTL ++ P NG +L++ +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 106 PSSFRKLSAYVPQHDACI------------PSLTVYETFLFSARLLVPKTSQIDTIITVL 153
P+ R+ V Q + + P ++V E +++A+L
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHD---------F 127
Query: 154 LTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212
++ELR + LSGG+R+R++I +L+++P +L+ DE TS LD S +M+
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ I + RTVI I + DRI+++ KG +V G L
Sbjct: 188 MHKI--CKGRTVI--IIAARLSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 8/209 (3%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS----- 107
T+ LK +++ ++ AI+G +G GKSTL + P++G IL ++ PI S
Sbjct: 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80
Query: 108 SFRKLSAYVPQH-DACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR 166
R+ V Q D + S +VY+ F A + +I + L + HL +
Sbjct: 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-K 139
Query: 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVIL 226
H LS G+++RV+I L+ +P VL+LDEPT+GLD +M+ L + T+I+
Sbjct: 140 PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 227 SIHQPSFKILSTIDRILLLSKGSVVHHGT 255
+ H L D + ++ +G V+ G
Sbjct: 200 ATHDIDIVPLYC-DNVFVMKEGRVILQGN 227
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 24/225 (10%)
Query: 49 SKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSS 108
++P +L+ +SL Q LA+VG SG GKST++ +L P G++ L+ IK +
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN 1101
Query: 109 FRKLSAY---VPQH----DACIPSLTVY----ETFLFSARLLVPKTSQIDTIITVLLTEL 157
+ L A V Q D I Y + + K + I I L +
Sbjct: 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 158 RLAHLASTRLAH---NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLK 214
+TR+ LSGG+++R++I +L+ P +LLLDE TS LD+ S V + L
Sbjct: 1162 ------NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 215 SISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
A RT I+ H+ S + D I+++ G V HGT L
Sbjct: 1216 --KAREGRTCIVIAHRLS--TIQNADLIVVIQNGKVKEHGTHQQL 1256
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 24/220 (10%)
Query: 49 SKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSS 108
S+ ILK ++L Q +A+VG SG GKST + ++ P +G + ++ I+ +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 109 FRKLSAY--VPQHDACIPSLTVYETFLFSARLL--------VPKTSQIDTIITVLLTELR 158
R L V + + + T+ E + + V + + D I ++
Sbjct: 459 VRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI-------MK 511
Query: 159 LAHLASTRLAH---NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKS 215
L H T + LSGG+++R++I +L+ +P +LLLDE TS LD+ S V L
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD- 570
Query: 216 ISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255
A RT I+ H+ S + D I G +V G
Sbjct: 571 -KAREGRTTIVIAHRLS--TVRNADVIAGFDGGVIVEQGN 607
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 8/210 (3%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI------KPSSF 109
L NVSL QI ++G SGAGKSTL+ ++ PT G++L++ + + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 110 RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAH 169
R+ + QH + S TV+ L ++ +T LL+ + L +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-YPS 139
Query: 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH 229
NLSGG+++RV+I +L +P VLL DE TS LD + ++++ LK I+ T++L H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 230 QPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ + D + ++S G ++ T++ +
Sbjct: 200 EMDV-VKRICDCVAVISNGELIEQDTVSEV 228
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 24/225 (10%)
Query: 49 SKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSS 108
++P +L+ +SL Q LA+VG SG GKST++ +L P G++ L+ IK +
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN 1101
Query: 109 FRKLSAY---VPQH----DACIPSLTVY----ETFLFSARLLVPKTSQIDTIITVLLTEL 157
+ L A V Q D I Y + + K + I I L +
Sbjct: 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 158 RLAHLASTRLAH---NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLK 214
+TR+ LSGG+++R++I +L+ P +LLLDE TS LD+ S V + L
Sbjct: 1162 ------NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 215 SISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
A RT I+ H+ S + D I+++ G V HGT L
Sbjct: 1216 --KAREGRTCIVIAHRLS--TIQNADLIVVIQNGKVKEHGTHQQL 1256
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 24/220 (10%)
Query: 49 SKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSS 108
S+ ILK ++L Q +A+VG SG GKST + ++ P +G + ++ I+ +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 109 FRKLSAY--VPQHDACIPSLTVYETFLFSARLL--------VPKTSQIDTIITVLLTELR 158
R L V + + + T+ E + + V + + D I ++
Sbjct: 459 VRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI-------MK 511
Query: 159 LAHLASTRLAH---NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKS 215
L H T + LSGG+++R++I +L+ +P +LLLDE TS LD+ S V L
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD- 570
Query: 216 ISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255
A RT I+ H+ S + D I G +V G
Sbjct: 571 -KAREGRTTIVIAHRLS--TVRNADVIAGFDGGVIVEQGN 607
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 8/210 (3%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI------KPSSF 109
L NVSL QI ++G SGAGKSTL+ ++ PT G++L++ + + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 110 RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAH 169
R+ + QH + S TV+ L ++ +T LL+ + L +
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-YPS 162
Query: 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH 229
NLSGG+++RV+I +L +P VLL D+ TS LD + ++++ LK I+ T++L H
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
Query: 230 QPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ + D + ++S G ++ T++ +
Sbjct: 223 EMDV-VKRICDCVAVISNGELIEQDTVSEV 251
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 8/210 (3%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI------KPSSF 109
L NVSL QI ++G SGAGKSTL+ ++ PT G++L++ + + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 110 RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAH 169
R+ + QH + S TV+ L ++ +T LL+ + L +
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-YPS 162
Query: 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH 229
NLSGG+++RV+I +L +P VLL D+ TS LD + ++++ LK I+ T++L H
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
Query: 230 QPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+ + D + ++S G ++ T++ +
Sbjct: 223 EXDV-VKRICDCVAVISNGELIEQDTVSEV 251
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 5/202 (2%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--PSSFRKLS 113
+ VS + +A++GPSG GK+T L +L+ PT+G I + + P +R++
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREV- 77
Query: 114 AYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG 173
V Q+ A P +TV+E F R +++ + + +L + +L R LSG
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD-RKPTQLSG 136
Query: 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSF 233
G+++RV++ +L+ P VLL DEP S LD+ + +K + T + H +
Sbjct: 137 GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA- 195
Query: 234 KILSTIDRILLLSKGSVVHHGT 255
+ ++ RI + ++G +V +GT
Sbjct: 196 EAMTMASRIAVFNQGKLVQYGT 217
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 28/226 (12%)
Query: 44 FEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103
F+ ++ P ILK+++L+ + +A VG SG GKSTL++++ T+G IL++
Sbjct: 347 FQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404
Query: 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTE---- 156
IK S R V Q D + S TV E L P + + + +
Sbjct: 405 IKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLGR----PTATDEEVVEAAKMANAHDF 459
Query: 157 -LRLAHLASTRLAH---NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212
+ L T + LSGG+++R+SI L++P +L+LDE TS LD S + +
Sbjct: 460 IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 213 LKSISASRHRTVILSIHQPSFKILSTI---DRILLLSKGSVVHHGT 255
L + S+ RT ++ H+ LSTI D+I+++ G +V GT
Sbjct: 520 LDVL--SKDRTTLIVAHR-----LSTITHADKIVVIENGHIVETGT 558
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 13/219 (5%)
Query: 46 ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105
A + P +L+ ++ T YP ++ A+VGP+G+GKST+ +L PT G +LL+ P+
Sbjct: 25 AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV 84
Query: 106 PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAS- 164
L V L +F + + +T ++ I V + ++
Sbjct: 85 QYDHHYLHTQVAA--VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 165 --------TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSI 216
+ LSGG+R+ V++ +L+ P +L+LD+ TS LD+ + V + L
Sbjct: 143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYES 202
Query: 217 SASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255
RTV+L HQ + IL L +GSV GT
Sbjct: 203 PEWASRTVLLITHQ--LSLAERAHHILFLKEGSVCEQGT 239
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 23/228 (10%)
Query: 46 ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105
A ++P +L+ ++ T P ++ A+VGP+G+GKST+ +L PT G +LL+ P+
Sbjct: 23 AYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLP 82
Query: 106 PSSFRKLSAYV------PQ------HDACIPSLTVYETF--LFSARLLVPKTSQIDTIIT 151
R L V PQ + LT T + +A + S I +
Sbjct: 83 QYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQ 142
Query: 152 VLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ 211
TE+ A LSGG+R+ V++ +L+ P VL+LD+ TS LD+ S V Q
Sbjct: 143 GYDTEVDEA-------GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 212 TLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
L S R+ +L I Q ++ D IL L G++ GT L
Sbjct: 196 LLYE-SPERYSRSVLLITQ-HLSLVEQADHILFLEGGAIREGGTHQQL 241
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 25/224 (11%)
Query: 46 ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105
A ++P I ++ SL+ + A+VGPSG+GKST+L +L P +GTI L+ I+
Sbjct: 350 AYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 409
Query: 106 ---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL 162
P R V Q + + S ++ E + A P + + I V +A +
Sbjct: 410 QLNPVWLRSKIGTVSQ-EPILFSCSIAENIAYGAD--DPSSVTAEEIQRVAEVANAVAFI 466
Query: 163 ASTRLAHN---------LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTL 213
+ N LSGG+++R++I +LL +P +LLLDE TS LD+ + + V + L
Sbjct: 467 RNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL 526
Query: 214 KSISASRHRTVILSIHQPSFKILSTI---DRILLLSKGSVVHHG 254
+ RTV++ H+ LSTI + + +L +G + +G
Sbjct: 527 DRLMDG--RTVLVIAHR-----LSTIKNANMVAVLDQGKITEYG 563
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 17/238 (7%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI------KP 106
T +L ++SL+ P +IL I+G SG GK+TLL L+ P +G I L+ I P
Sbjct: 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLP 76
Query: 107 SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR 166
R+L Y+ Q P LTVY + +T+Q I +L ++ LA R
Sbjct: 77 VRERRL-GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-R 134
Query: 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVIL 226
H LSGG+++R ++ +L DP ++LLDEP S LD + + + + + + ++ +
Sbjct: 135 YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVF 194
Query: 227 SIHQPSFKILSTIDRILLLSKGSVVHHGT-------LASLETFL-LSSGFSVPPQLNA 276
H + L DRI ++ +G ++ + A L+ L + G P LNA
Sbjct: 195 VSHD-REEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAALNA 251
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 13/219 (5%)
Query: 46 ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105
A + P +L+ ++ T YP ++ A+VGP+G+GKST+ +L PT G +LL+ P+
Sbjct: 25 AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV 84
Query: 106 PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAS- 164
L V L +F + + +T ++ I V + ++
Sbjct: 85 QYDHHYLHTQVAA--VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 165 --------TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSI 216
+ LSGG+R+ V++ +L+ P +L+LD TS LD+ + V + L
Sbjct: 143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202
Query: 217 SASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255
RTV+L Q + IL L +GSV GT
Sbjct: 203 PEWASRTVLLITQQ--LSLAERAHHILFLKEGSVCEQGT 239
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 25/224 (11%)
Query: 46 ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105
A ++P I ++ SL+ + A+VGPSG+GKST+L +L P +GTI L+ I+
Sbjct: 381 AYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 440
Query: 106 ---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL 162
P R V Q + + S ++ E + A P + + I V +A +
Sbjct: 441 QLNPVWLRSKIGTVSQ-EPILFSCSIAENIAYGAD--DPSSVTAEEIQRVAEVANAVAFI 497
Query: 163 ASTRLAHN---------LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTL 213
+ N LSGG+++R++I +LL +P +LLLDE TS LD+ + + V + L
Sbjct: 498 RNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL 557
Query: 214 KSISASRHRTVILSIHQPSFKILSTI---DRILLLSKGSVVHHG 254
+ RTV++ H LSTI + + +L +G + +G
Sbjct: 558 DRLMDG--RTVLVIAHH-----LSTIKNANMVAVLDQGKITEYG 594
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 10/223 (4%)
Query: 50 KPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI-LLNSSPIKPSS 108
+ ++ + ++ ILA++G +G GKSTLLD+L P G I + S P
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQF 74
Query: 109 FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLA 168
F AY + T TF A+ PK+ + L L L HLA
Sbjct: 75 FSSPFAYSVLDIVLMGRSTHINTF---AK---PKSHDYQVAMQAL-DYLNLTHLAKREFT 127
Query: 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSI 228
+LSGG+R+ + I ++ + ++LLDEPTS LD + V+ L ++ S++ TV+ +
Sbjct: 128 -SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186
Query: 229 HQPSFKILSTIDRILLLSKGSVVHHGTLASLETFLLSSGFSVP 271
HQP+ ++++ ++ LLL+K + T L + L++ F +P
Sbjct: 187 HQPN-QVVAIANKTLLLNKQNFKFGETRNILTSENLTALFHLP 228
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 11/212 (5%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-----SSF 109
+LK +++ +++ ++GPSG+GKST L L+ G I+++ +K +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 110 RKLSAYVPQHDACIPSLTVYETFLFSARLLVPK--TSQIDTIITVLLTELRLAHLASTRL 167
R+ V Q P +TV A + V K + + LL ++ L A
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAMELLDKVGLKDKAHA-Y 135
Query: 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILS 227
+LSGG+ +RV+I +L +P ++L DEPTS LD V+ +K + A+ T+++
Sbjct: 136 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL-ANEGMTMVVV 194
Query: 228 IHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
H+ F DR+L + G ++ G L
Sbjct: 195 THEMGF-AREVGDRVLFMDGGYIIEEGKPEDL 225
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 11/212 (5%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-----SSF 109
+LK +++ +++ ++GPSG+GKST L L+ G I+++ +K +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 110 RKLSAYVPQHDACIPSLTVYETFLFSARLLVPK--TSQIDTIITVLLTELRLAHLASTRL 167
R+ V Q P +TV A + V K + + LL ++ L A
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAMELLDKVGLKDKAHA-Y 156
Query: 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILS 227
+LSGG+ +RV+I +L +P ++L DEPTS LD V+ +K + A+ T+++
Sbjct: 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL-ANEGMTMVVV 215
Query: 228 IHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
H+ F DR+L + G ++ G L
Sbjct: 216 THEMGF-AREVGDRVLFMDGGYIIEEGKPEDL 246
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 19/200 (9%)
Query: 70 AIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRKLSAYVPQHDACIPSL 126
A+VG +G+GKST+ +L R G I + + +S R + VPQ D + +
Sbjct: 50 ALVGHTGSGKSTIAKLL-YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQ-DTILFNE 107
Query: 127 TVYETFLF-------SARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179
T+ L+ + K++Q+ I L + + + LSGGER+R+
Sbjct: 108 TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPK--KWDTIVGNK-GMKLSGGERQRI 164
Query: 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTI 239
+I LL DP +++ DE TS LDS++ + + ++ + ++RT+I+ H+ S +S+
Sbjct: 165 AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL--RKNRTLIIIAHRLS--TISSA 220
Query: 240 DRILLLSKGSVVHHGTLASL 259
+ I+LL+KG +V GT L
Sbjct: 221 ESIILLNKGKIVEKGTHKDL 240
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 17/215 (7%)
Query: 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI--KPSSF-- 109
+ +K + L QI+ ++G +GAGK+T L ++ G I+ N I KP+
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 110 RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTS---QIDTIITVL--LTELRLAHLAS 164
R A VP+ P LTVYE A K ++ I ++ L E RL L
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKE-RLKQLGG 138
Query: 165 TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTV 224
T LSGGE++ ++IG +L P +L DEP+ GL V + ++ I ++ T
Sbjct: 139 T-----LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKI--NQEGTT 191
Query: 225 ILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
IL + Q + L +L G +V G + L
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 25/214 (11%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRKL 112
L+N++L + +A+VG SG+GKST+ +++ G IL++ ++ +S R
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 113 SAYVPQH-----DACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL 167
A V Q+ D ++ T +S R + + +++ + + ++ + T +
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYS-REQIEEAARMAYAMDFIN---KMDNGLDTVI 474
Query: 168 AHN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTV 224
N LSGG+R+R++I +LL D +L+LDE TS LD+ S + L + ++RT
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTS 532
Query: 225 ILSIHQPSFKILSTI---DRILLLSKGSVVHHGT 255
++ H+ LSTI D I+++ G +V GT
Sbjct: 533 LVIAHR-----LSTIEKADEIVVVEDGVIVERGT 561
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 13/219 (5%)
Query: 46 ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105
A + P +L+ ++ T YP ++ A+VGP+G+GKST+ +L PT G +LL+ P+
Sbjct: 25 AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV 84
Query: 106 PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAS- 164
L V L +F + + +T ++ I V + ++
Sbjct: 85 QYDHHYLHTQVAA--VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 165 --------TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSI 216
+ L+ G+R+ V++ +L+ P +L+LD TS LD+ + V + L
Sbjct: 143 PQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202
Query: 217 SASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255
RTV+L Q + IL L +GSV GT
Sbjct: 203 PEWASRTVLLITQQ--LSLAERAHHILFLKEGSVCEQGT 239
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 26/219 (11%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSA 114
+L V+ + P ++A++G +G+GKSTL++++ P G + ++ ++ + L
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 115 YVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAHLAS--------- 164
H + +P ET LFS + K + D ++ ++A +
Sbjct: 418 ----HISAVPQ----ETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 165 ----TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASR 220
R N SGG+++R+SI +L+ P VL+LD+ TS +D + ++ LK +
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG- 528
Query: 221 HRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
T I++ P+ +L+ D+IL+L +G V GT L
Sbjct: 529 CTTFIITQKIPT-ALLA--DKILVLHEGKVAGFGTHKEL 564
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 15/211 (7%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL---NSSPIKPSSFRK 111
++ +VSL +++AI+GP+GAGKSTLL +L+ SP++G L N + +P + +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 112 LSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAHLASTRLAHN 170
A + Q+ +V E P SQ + ++ + LA R
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGR---APYGGSQDRQALQQVMAQTDCLALAQ-RDYRV 141
Query: 171 LSGGERRRVSIGLSLLH------DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTV 224
LSGGE++RV + L P L LDEPTS LD + ++ L+ ++ V
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 225 ILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255
+H + L DRI+LL++G +V GT
Sbjct: 202 CCVLHDLNLAALYA-DRIMLLAQGKLVACGT 231
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 32/227 (14%)
Query: 49 SKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-- 106
KP L +VS + + +A+VG SG+GKST+ ++ + +G+I L+ ++
Sbjct: 355 EKPA---LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411
Query: 107 -SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAS- 164
++ R+ A V Q + + + T+ ++A + QI+ R AH
Sbjct: 412 LTNLRRHFALVSQ-NVHLFNDTIANNIAYAAEGEYTR-EQIEQAA-------RQAHAMEF 462
Query: 165 ---------TRLAHN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212
T + N LSGG+R+RV+I +LL D VL+LDE TS LD+ S +
Sbjct: 463 IENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAA 522
Query: 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
L + +++TV++ H+ S + D IL++ +G ++ G A L
Sbjct: 523 LDEL--QKNKTVLVIAHRLS--TIEQADEILVVDEGEIIERGRHADL 565
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 25/218 (11%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRKL 112
L+N++L + +A+VG SG+GKST+ +++ G IL++ ++ +S R
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 113 SAYVPQH-----DACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL 167
A V Q+ D ++ T +S R + + +++ + + ++ + T +
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYS-REQIEEAARMAYAMDFIN---KMDNGLDTII 474
Query: 168 AHN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTV 224
N LSGG+R+R++I +LL D +L+LDE TS LD+ S + L + ++RT
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTS 532
Query: 225 ILSIHQPSFKILSTI---DRILLLSKGSVVHHGTLASL 259
++ H+ LSTI D I+++ G +V GT + L
Sbjct: 533 LVIAHR-----LSTIEQADEIVVVEDGIIVERGTHSEL 565
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 44 FEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103
F S PPT L ++ + ++A+VG G GKS+LL L A G + + S
Sbjct: 11 FTWARSDPPT--LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS- 67
Query: 104 IKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA 163
AYVPQ A I + ++ E LF +L P + +L L
Sbjct: 68 ---------VAYVPQQ-AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGD 117
Query: 164 STRLAH---NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISAS- 219
T + NLSGG+++RVS+ ++ + + L D+P S +D+ ++ + +
Sbjct: 118 RTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177
Query: 220 RHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259
+++T IL H S+ L +D I+++S G + G+ L
Sbjct: 178 KNKTRILVTHSMSY--LPQVDVIIVMSGGKISEMGSYQEL 215
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 33/227 (14%)
Query: 44 FEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS-- 101
F KP +LK+++ P Q +A+VGP+G+GK+T++++L G IL++
Sbjct: 362 FSYDKKKP---VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 102 -SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTS--QIDTIITVLLTELR 158
IK SS R V Q D + S TV E + P + +I + ++
Sbjct: 419 IRKIKRSSLRSSIGIVLQ-DTILFSTTVKENLKYGN----PGATDEEIKEAAKLTHSDHF 473
Query: 159 LAHLAS------TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212
+ HL T +LS G+R+ ++I + L +P +L+LDE TS +D++ T
Sbjct: 474 IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK-------T 526
Query: 213 LKSISAS-----RHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254
KSI A+ +T I+ H+ + D I++L G +V G
Sbjct: 527 EKSIQAAMWKLMEGKTSIIIAHR--LNTIKNADLIIVLRDGEIVEMG 571
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 26/219 (11%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAY 115
L VS++ + I+GP+G+GKSTL+++++ G + + I +L Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 116 -------VPQHDACIPSLTVYETFLFSA-------------RLLVPKTSQIDTIITVLLT 155
PQ + +TV E L + +PK ++ +L
Sbjct: 83 GIVRTFQTPQ---PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 156 ELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKS 215
L+L+HL R A LSGG+ + V IG +L+ +P ++++DEP +G+ A ++ +
Sbjct: 140 FLKLSHLYD-RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 216 ISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254
+ A + T ++ H+ +L+ ID + ++ G ++ G
Sbjct: 199 LKA-KGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 26/219 (11%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAY 115
L VS++ + I+GP+G+GKSTL+++++ G + + I +L Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 116 -------VPQHDACIPSLTVYETFLFSA-------------RLLVPKTSQIDTIITVLLT 155
PQ + +TV E L + +PK ++ +L
Sbjct: 83 GIVRTFQTPQ---PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 156 ELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKS 215
L+L+HL R A LSGG+ + V IG +L+ +P ++++DEP +G+ A ++ +
Sbjct: 140 FLKLSHLYD-RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 216 ISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254
+ A + T ++ H+ +L+ ID + ++ G ++ G
Sbjct: 199 LKA-KGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 38/218 (17%)
Query: 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPS 125
+++ IVGP+G GK+T + +L+ PT G + + + AY PQ+
Sbjct: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT----------VAYKPQYIKAEYE 417
Query: 126 LTVYETFLFSARLLVPKTSQIDT-------IITVLLTELRLAHLASTRLAHNLSGGERRR 178
TVYE S+ID+ T LL L + L R +LSGGE +R
Sbjct: 418 GTVYELL-----------SKIDSSKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGGELQR 465
Query: 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST 238
V+I +LL D + LLDEP++ LD V + ++ + +T ++ H ++
Sbjct: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH--DVLMIDY 523
Query: 239 IDRILLLSKGSVVHHGTL-------ASLETFLLSSGFS 269
+ L++ +G HG + FL S G +
Sbjct: 524 VSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVGIT 561
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 26/179 (14%)
Query: 68 ILAIVGPSGAGKSTLLDILSARTSPT---------------NGTILLNS-SPIKPSSFRK 111
++ IVGP+G GK+T + IL+ + P G L N +K R
Sbjct: 105 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 164
Query: 112 LSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNL 171
+ PQ+ +P R L+ K ++ V+ L R H L
Sbjct: 165 VVK--PQYVDLLPK-----AVKGKVRELLKKVDEVGKFEEVVKELELENVL--DRELHQL 215
Query: 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
SGGE +RV+I +LL DEP+S LD R V + ++ + A+ + V++ H
Sbjct: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEGKAVLVVEHD 273
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 38/218 (17%)
Query: 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPS 125
+++ IVGP+G GK+T + +L+ PT G + + + AY PQ+
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT----------VAYKPQYIKAEYE 431
Query: 126 LTVYETFLFSARLLVPKTSQIDT-------IITVLLTELRLAHLASTRLAHNLSGGERRR 178
TVYE S+ID+ T LL L + L R +LSGGE +R
Sbjct: 432 GTVYELL-----------SKIDSSKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGGELQR 479
Query: 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST 238
V+I +LL D + LLDEP++ LD V + ++ + +T ++ H ++
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH--DVLMIDY 537
Query: 239 IDRILLLSKGSVVHHGTL-------ASLETFLLSSGFS 269
+ L++ +G HG + FL S G +
Sbjct: 538 VSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVGIT 575
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 26/179 (14%)
Query: 68 ILAIVGPSGAGKSTLLDILSARTSPT---------------NGTILLNS-SPIKPSSFRK 111
++ IVGP+G GK+T + IL+ + P G L N +K R
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178
Query: 112 LSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNL 171
+ PQ+ +P + R L+ K ++ V+ L R H L
Sbjct: 179 VVK--PQYVDLLP-----KAVKGKVRELLKKVDEVGKFEEVVKELELENVL--DRELHQL 229
Query: 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
SGGE +RV+I +LL DEP+S LD R V + ++ + A+ + V++ H
Sbjct: 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEGKAVLVVEHD 287
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 102/219 (46%), Gaps = 26/219 (11%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAY 115
L VS++ + I+GP+G+GKSTL+++++ G + + I +L Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 116 -------VPQHDACIPSLTVYETFLFSA-------------RLLVPKTSQIDTIITVLLT 155
PQ + +TV E L + +PK ++ +L
Sbjct: 83 GIVRTFQTPQ---PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 156 ELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKS 215
L+L+HL R A LSGG+ + V IG +L+ +P ++++D+P +G+ A ++ +
Sbjct: 140 FLKLSHLYD-RKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLE 198
Query: 216 ISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254
+ A + T ++ H+ +L+ ID + ++ G ++ G
Sbjct: 199 LKA-KGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 31/263 (11%)
Query: 58 NVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS--------PIKPSSF 109
+SL + + AIVG S +GKST+++ ++ +T P NG IL ++
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMT-KTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 110 RKLS----AYVPQ--HDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA 163
RK+ A VPQ + P++ V E F + + S + +I +LR+ L
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSE-LIEKASEKLRMVRLN 143
Query: 164 STRLAH----NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISAS 219
+ + LSGG ++RV I L+LL DP VL+LDEPTS LD + +++Q LK +
Sbjct: 144 PEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKM 203
Query: 220 RHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETFLLSSGFSVP--PQLNAL 277
T+I H + D++ ++ G++V + + TF + F P P L
Sbjct: 204 LKITLIFVTHDIAVAA-ELADKVAVIYGGNLVEYNS-----TFQI---FKNPLHPYTRGL 254
Query: 278 EYTMEILSQLHDDTKPLMNTPPS 300
++ ++ KP+ PPS
Sbjct: 255 INSIMAVNADMSKVKPIPGDPPS 277
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPS 125
+++ IVGP+G GK+T + L+ PT G I + + AY PQ+
Sbjct: 312 GEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLT----------VAYKPQYIKADYE 361
Query: 126 LTVYETFLFSARLLVPKTSQIDT-------IITVLLTELRLAHLASTRLAHNLSGGERRR 178
TVYE S+ID T LL L + L R + LSGGE +R
Sbjct: 362 GTVYELL-----------SKIDASKLNSNFYKTELLKPLGIIDLYD-REVNELSGGELQR 409
Query: 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
V+I +LL D + LLDEP++ LD V + ++ + +T ++ H
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 22/177 (12%)
Query: 68 ILAIVGPSGAGKSTLLDILSARTSPT--------NGTILLNSSPIKPSSFRKLS------ 113
++ IVGP+G GKST + IL+ + P +G I + F KL
Sbjct: 49 VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRP 108
Query: 114 AYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG 173
PQ+ IP + + +T +++ ++ L L ++ + H LSG
Sbjct: 109 VVKPQYVDLIPKAVKGKVIELLKK--ADETGKLEEVVKAL----ELENVLEREIQH-LSG 161
Query: 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
GE +RV+I +LL + DEP+S LD R N + ++ +S ++V++ H
Sbjct: 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS-EEGKSVLVVEHD 217
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 31/217 (14%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSA 114
+LKN++L ++LAI G +G+GK++LL ++ + G I+ +S + +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG-IIKHSGRV---------S 102
Query: 115 YVPQHDACIPSLTVYETFLFSARL------LVPKTSQIDTIITVLLTELRLAHLASTRLA 168
+ Q +P T+ E +F V K Q+ IT + A +T L
Sbjct: 103 FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDIT------KFAEQDNTVLG 155
Query: 169 HN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTV 224
LSGG+R R+S+ ++ D + LLD P LD + V ++ + + A++ R +
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 225 ILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ S + L D+IL+L +GS +GT + L++
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 31/217 (14%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSA 114
+LKN++L ++LAI G +G+GK++LL ++ + G I+ +S + +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG-IIKHSGRV---------S 102
Query: 115 YVPQHDACIPSLTVYETFLFSARL------LVPKTSQIDTIITVLLTELRLAHLASTRLA 168
+ Q +P T+ E +F V K Q+ IT + A +T L
Sbjct: 103 FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDIT------KFAEQDNTVLG 155
Query: 169 HN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTV 224
LSGG+R R+S+ ++ D + LLD P LD + V ++ + + A++ R +
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 225 ILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ S + L D+IL+L +GS +GT + L++
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 31/220 (14%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKL 112
T +LK+++ Q+LA+ G +GAGK++LL ++ P+ G I +S I
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-HSGRI-------- 83
Query: 113 SAYVPQHDACIPSLTVYETFLFSARL------LVPKTSQIDTIITVLLTELRLAHLASTR 166
++ Q +P T+ E +F V K Q++ I+ + A +
Sbjct: 84 -SFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDIS------KFAEKDNIV 135
Query: 167 LAHN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHR 222
L LSGG+R R+S+ ++ D + LLD P LD + + ++ + + A++ R
Sbjct: 136 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 195
Query: 223 TVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETF 262
++ S + L D+IL+L +GS +GT + L+
Sbjct: 196 ILVTS----KMEHLKKADKILILHEGSSYFYGTFSELQNL 231
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 19/211 (9%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSA 114
+LKN++L ++LAI G +G+GK++LL ++ + G I + S F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 115 YVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN---L 171
+ + I S Y+ + + + V K Q+ IT + A +T L L
Sbjct: 113 GTIKEN--IISGVSYDEYRYKS---VVKACQLQQDIT------KFAEQDNTVLGEGGVTL 161
Query: 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTVILSIHQ 230
SGG+R R+S+ ++ D + LLD P LD + V ++ + + A++ R ++ S
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS--- 218
Query: 231 PSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ L D+IL+L +GS +GT + L++
Sbjct: 219 -KMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 31/220 (14%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKL 112
T +LK+++ Q+LA+ G +GAGK++LL ++ P+ G I +S I
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-HSGRI-------- 71
Query: 113 SAYVPQHDACIPSLTVYETFLFSARL------LVPKTSQIDTIITVLLTELRLAHLASTR 166
++ Q +P T+ E +F V K Q++ I+ + A +
Sbjct: 72 -SFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDIS------KFAEKDNIV 123
Query: 167 LAHN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHR 222
L LSGG+R R+S+ ++ D + LLD P LD + + ++ + + A++ R
Sbjct: 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 183
Query: 223 TVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETF 262
++ S + L D+IL+L +GS +GT + L+
Sbjct: 184 ILVTS----KMEHLKKADKILILHEGSSYFYGTFSELQNL 219
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 15/212 (7%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT--NGTILLNSSPI---KPSSF 109
ILK V+L ++ A++GP+GAGKSTL IL+ T G ILL+ I P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 110 RKLSAYVP-QHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLA 168
+ ++ Q+ +P +T+ + + + + + T + L L + L+
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 169 ----HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTV 224
SGGE++R I L+ +P +LDE SGLD + V + + ++ +
Sbjct: 138 RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGAL 197
Query: 225 ILSIHQPSFKILSTI--DRILLLSKGSVVHHG 254
+++ +Q +IL+ I D++ ++ G VV G
Sbjct: 198 VITHYQ---RILNYIQPDKVHVMMDGRVVATG 226
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 25/219 (11%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS--PTNGTI------LLNSSPIKP 106
IL+ +SL +P ++ AI+GP+G+GKSTL L+ R T GT+ LL SP
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 107 SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR 166
+ A+ Q+ IP ++ + FL +A V +T+ +L +A +
Sbjct: 76 AGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 132
Query: 167 LAHNL---------SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSIS 217
+ +L SGGE++R I + +P + +LDE SGLD + V + S+
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 192
Query: 218 ASRHRTVILSIHQPSFKILSTI--DRILLLSKGSVVHHG 254
+ +I++ +Q +IL I D + +L +G +V G
Sbjct: 193 DGKRSFIIVTHYQ---RILDYIKPDYVHVLYQGRIVKSG 228
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 23/213 (10%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSA 114
+LKN++L ++LAI G +G+GK++LL ++ + G I+ +S + S + S
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG-IIKHSGRVSFCS--QFSW 109
Query: 115 YVPQ--HDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN-- 170
+P + I ++ Y+ + + + V K Q+ IT + A +T L
Sbjct: 110 IMPGTIKENIIRGVS-YDEYRYKS---VVKACQLQQDIT------KFAEQDNTVLGEGGV 159
Query: 171 -LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTVILSI 228
LSGG+R R+S+ ++ D + LLD P LD + V ++ + + A++ R ++ S
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS- 218
Query: 229 HQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ L D+IL+L +GS +GT + L++
Sbjct: 219 ---KMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 25/219 (11%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS--PTNGTI------LLNSSPIKP 106
IL+ +SL +P ++ AI+GP+G+GKSTL L+ R T GT+ LL SP
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 107 SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR 166
+ A+ Q+ IP ++ + FL +A V +T+ +L +A +
Sbjct: 95 AGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 167 LAHNL---------SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSIS 217
+ +L SGGE++R I + +P + +LDE SGLD + V + S+
Sbjct: 152 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211
Query: 218 ASRHRTVILSIHQPSFKILSTI--DRILLLSKGSVVHHG 254
+ +I++ +Q +IL I D + +L +G +V G
Sbjct: 212 DGKRSFIIVTHYQ---RILDYIKPDYVHVLYQGRIVKSG 247
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 20/211 (9%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSA 114
+LKN++L ++LAI G +G+GK++LL ++ + G I + S F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 115 YVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN---L 171
+ + S Y+ + + + V K Q+ IT + A +T L L
Sbjct: 113 GTIKENIIGVS---YDEYRYKS---VVKACQLQQDIT------KFAEQDNTVLGEGGVTL 160
Query: 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTVILSIHQ 230
SGG+R R+S+ ++ D + LLD P LD + V ++ + + A++ R ++ S
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS--- 217
Query: 231 PSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ L D+IL+L +GS +GT + L++
Sbjct: 218 -KMEHLRKADKILILHQGSSYFYGTFSELQS 247
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKL 112
T +LK+++ Q+LA+ G +GAGK++LL ++ P+ G I + S F +
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 110
Query: 113 SAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN-- 170
+ + I + Y+ + + + V K Q++ I+ + A + L
Sbjct: 111 MPGTIKEN--IIAGVSYDEYRYRS---VIKACQLEEDIS------KFAEKDNIVLGEGGI 159
Query: 171 -LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTVILSI 228
LSGG+R R+S+ ++ D + LLD P LD + + ++ + + A++ R ++ S
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS- 218
Query: 229 HQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ L D+IL+L +GS +GT + L+
Sbjct: 219 ---KMEHLKKADKILILHEGSSYFYGTFSELQN 248
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 20/214 (9%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKL 112
T +LK+++ Q+LA+ G +GAGK++LL ++ P+ G I + S F +
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 80
Query: 113 SAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN-- 170
+ + S Y+ + + + V K Q++ I+ + A + L
Sbjct: 81 MPGTIKENIIGVS---YDEYRYRS---VIKACQLEEDIS------KFAEKDNIVLGEGGI 128
Query: 171 -LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTVILSI 228
LSGG+R R+S+ ++ D + LLD P LD + + ++ + + A++ R ++ S
Sbjct: 129 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS- 187
Query: 229 HQPSFKILSTIDRILLLSKGSVVHHGTLASLETF 262
+ L D+IL+L +GS +GT + L+
Sbjct: 188 ---KMEHLKKADKILILHEGSSYFYGTFSELQNL 218
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 34/220 (15%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKL 112
T +LK+++ Q+LA+ G +GAGK++LL ++ P+ G I +S I
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-HSGRI-------- 101
Query: 113 SAYVPQHDACIPSL-------TVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAST 165
++ Q+ +P Y+ + + + V K Q++ I+ + A +
Sbjct: 102 -SFCSQNSWIMPGTIKENIIGVSYDEYRYRS---VIKACQLEEDIS------KFAEKDNI 151
Query: 166 RLAHN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRH 221
L LSGG+R R+S+ ++ D + LLD P LD + + ++ + + A++
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 222 RTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
R ++ S + L D+IL+L +GS +GT + L+
Sbjct: 212 RILVTS----KMEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 34/220 (15%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKL 112
T +LK+++ Q+LA+ G +GAGK++LL ++ P+ G I +S I
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-HSGRI-------- 101
Query: 113 SAYVPQHDACIPSL-------TVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAST 165
++ Q+ +P Y+ + + + V K Q++ I+ + A +
Sbjct: 102 -SFCSQNSWIMPGTIKENIIGVSYDEYRYRS---VIKACQLEEDIS------KFAEKDNI 151
Query: 166 RLAHN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRH 221
L LSGG+R R+S+ ++ D + LLD P LD + + ++ + + A++
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 222 RTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
R ++ S + L D+IL+L +GS +GT + L+
Sbjct: 212 RILVTS----KMEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 21/218 (9%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--------- 105
+LK VSL A +++I+G SG+GKST L ++ P+ G I++N I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 106 ----PSSFRKLSA---YVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVL--LTE 156
+ R L V QH +TV E + A + V S+ D L L +
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVLGLSKHDARERALKYLAK 139
Query: 157 LRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSI 216
+ + A + +LSGG+++RVSI +L +P VLL DEPTS LD V++ ++ +
Sbjct: 140 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 199
Query: 217 SASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254
A +T+++ H+ F ++ L +G + G
Sbjct: 200 -AEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEG 235
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSA 114
+L+ +++T ++ GP+G GK+TLL +S P G I+ N PI + +
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI--TKVKGKIF 81
Query: 115 YVPQHDACIPSLTVYETFLFSARLL----VPKTSQIDTIITVLLTELRLAHLASTRLAHN 170
++P+ + +P E +L + L V K +D + +V + +L+ +L
Sbjct: 82 FLPE-EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK------KKLGE- 133
Query: 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
LS G RRV + +LL + + +LD+P +D S V++++ I + +I S +
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193
Query: 231 PSF 233
S+
Sbjct: 194 LSY 196
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP-----IKPSSFRKLSAYV 116
T P Q+L +VG +G GKST L IL+ + P G + P IK +L Y
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR--FDDPPEWQEIIKYFRGSELQNYF 156
Query: 117 -------------PQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA 163
PQ+ IP + LL + + + + L+L ++
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPR-AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL 215
Query: 164 STRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISA 218
R LSGGE +R +IG+S + + V + DEP+S LD + N Q ++S+ A
Sbjct: 216 K-RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTIL--LNSSPIKPSSFRKLSAYVPQHDACI 123
S+IL ++G +G GK+TL+ +L+ P G + LN S +KP +K++ P
Sbjct: 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS-MKP---QKIAPKFPG----- 428
Query: 124 PSLTVYETFLFSAR--LLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181
TV + F R L P+ T ++ LR+ + + H LSGGE +RV+I
Sbjct: 429 ---TVRQLFFKKIRGQFLNPQFQ------TDVVKPLRIDDIIDQEVQH-LSGGELQRVAI 478
Query: 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH 229
L+L + L+DEP++ LDS + ++ +T + H
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 50 KPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSF 109
K ILK +S + G +GAGK+TLL+IL+A T+GT+ L P
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK--XPGKV 88
Query: 110 RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL-- 167
+ V QH + S ++ E F R+ ID +I+ + + +
Sbjct: 89 GYSAETVRQHIGFV-SHSLLEKFQEGERV-------IDVVISGAFKSIGVYQDIDDEIRN 140
Query: 168 -AHN-----------------LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLD 202
AH LS GE++RV I +L P VL+LDEP +GLD
Sbjct: 141 EAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 31/219 (14%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKL 112
T +LK+++ Q+LA+ G +GAGK++LL ++ P+ G I +S I
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-HSGRI-------- 101
Query: 113 SAYVPQHDACIPSLTVYETFLFSARL------LVPKTSQIDTIITVLLTELRLAHLASTR 166
++ Q +P T+ E +F V K Q++ I+ + A +
Sbjct: 102 -SFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDIS------KFAEKDNIV 153
Query: 167 LAHN---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHR 222
L LS G++ ++S+ ++ D + LLD P LD + + ++ + + A++ R
Sbjct: 154 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 213
Query: 223 TVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
++ S + L D+IL+L +GS +GT + L+
Sbjct: 214 ILVTS----KMEHLKKADKILILHEGSSYFYGTFSELQN 248
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 35/242 (14%)
Query: 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS---SPIKPSSFRK 111
IL+N+S + P Q + ++G +G+GKSTLL R T G I ++ I +RK
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAF-LRLLNTEGEIQIDGVSWDSITLEQWRK 94
Query: 112 LSAYVPQHDACIPSLTVYETFLFSA---RLLVPKTSQIDTIITVLLTELRLAHLASTRLA 168
+PQ + F+FS + L P + D I + E+ L +
Sbjct: 95 AFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 169 H----------NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISA 218
LS G ++ + + S+L +LLLDEP++ LD + + +TLK A
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA 203
Query: 219 SRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETFLLS---SGFSVPPQLN 275
TVIL + + + D+ L++ + V + ++ L + +GF P++N
Sbjct: 204 D--CTVILC--EARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMN 259
Query: 276 AL 277
L
Sbjct: 260 FL 261
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 20/213 (9%)
Query: 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKL 112
T +LK+++ Q+LA+ G +GAGK++LL ++ P+ G I + S F +
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 110
Query: 113 SAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN-- 170
+ + S Y+ + + + V K Q++ I+ + A + L
Sbjct: 111 MPGTIKENIIGVS---YDEYRYRS---VIKACQLEEDIS------KFAEKDNIVLGEGGI 158
Query: 171 -LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTVILSI 228
LS G++ ++S+ ++ D + LLD P LD + + ++ + + A++ R ++ S
Sbjct: 159 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS- 217
Query: 229 HQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ L D+IL+L +GS +GT + L+
Sbjct: 218 ---KMEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLS---AYVPQHDAC 122
+IL +VGP+GAGKSTLL + TS G+I P++ S KL+ AY+ Q
Sbjct: 26 GEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQ-T 83
Query: 123 IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182
P T +L + +T ++ + L + +L R + LSGGE +RV +
Sbjct: 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLA 138
Query: 183 LSLLH-----DPA--VLLLDEPTSGLD 202
+L +PA +LLLDEP + LD
Sbjct: 139 AVVLQITPQANPAGQLLLLDEPXNSLD 165
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLS---AYVPQHDAC 122
+IL +VGP+GAGKSTLL + TS G+I P++ S KL+ AY+ Q
Sbjct: 26 GEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQ-T 83
Query: 123 IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182
P T +L + +T ++ + L + +L R + LSGGE +RV +
Sbjct: 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLA 138
Query: 183 LSLLH-----DPA--VLLLDEPTSGLD 202
+L +PA +LLLDEP + LD
Sbjct: 139 AVVLQITPQANPAGQLLLLDEPXNSLD 165
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 19/199 (9%)
Query: 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLS---AYVPQHDAC 122
+IL +VGP+GAGKSTLL ++ TS G+I P++ S KL+ AY+ Q
Sbjct: 26 GEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQ-T 83
Query: 123 IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182
P T +L + +T ++ + L + +L R + LSGGE +RV +
Sbjct: 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLA 138
Query: 183 LSLLH-----DPA--VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKI 235
+L +PA +LLLD+P + LD + + L ++S + +++S H +
Sbjct: 139 AVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALS-QQGLAIVMSSHDLNH-T 196
Query: 236 LSTIDRILLLSKGSVVHHG 254
L R LL G ++ G
Sbjct: 197 LRHAHRAWLLKGGKMLASG 215
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 19/199 (9%)
Query: 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLS---AYVPQHDAC 122
+IL +VGP+GAGKSTLL ++ TS G+I P++ S KL+ AY+ Q
Sbjct: 26 GEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQ-T 83
Query: 123 IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182
P T +L + +T ++ + L + +L R + LSGGE +RV +
Sbjct: 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLA 138
Query: 183 LSLLH-----DPA--VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKI 235
+L +PA +LLLD+P LD + + L ++S + +++S H +
Sbjct: 139 AVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALS-QQGLAIVMSSHDLNH-T 196
Query: 236 LSTIDRILLLSKGSVVHHG 254
L R LL G ++ G
Sbjct: 197 LRHAHRAWLLKGGKMLASG 215
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 63 AYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDAC 122
A +I+ I+GP+G GK+T IL + G++ +P K K P +D
Sbjct: 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSV----TPEKQILSYKPQRIFPNYDGT 346
Query: 123 IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182
+ + +L +A TS + L L L + + ++LSGGE +++ I
Sbjct: 347 V------QQYLENASKDALSTSS--WFFEEVTKRLNLHRLLESNV-NDLSGGELQKLYIA 397
Query: 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232
+L + + +LD+P+S LD + V + +K ++ R + H S
Sbjct: 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 13/175 (7%)
Query: 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS---SFRKLSAYVPQ 118
T + IL ++G +G GK+T+L IL+ P G NS K FR Y
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYF 78
Query: 119 HDACIPSLTVYETFLF---SARLLVPKTSQIDTIITVLLTELRLAHLAS-----TRLAHN 170
+ L + + +++ L ++I T I + + L + + A+
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVI 225
LSGG +R+ + SLL + V + D+P+S LD R N+ + ++ + +++ V+
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAY 115
L+N++L +++ I+GP+G+GK+TLL +S P +G I +N + RK+ Y
Sbjct: 21 LENINLEVNGEKVI-ILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEV-----RKIRNY 73
Query: 116 VPQHDACIPSLTVYETFLFSARLLVPKTSQID-TIITVLLTELRLAHLASTRLAHNLSGG 174
+ ++ +P + L + +D + +L L+L R + LS G
Sbjct: 74 I-RYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAG 132
Query: 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDS 203
+ V L+L P ++ LDEP +D+
Sbjct: 133 QSVLVRTSLALASQPEIVGLDEPFENVDA 161
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 70 AIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVY 129
I GP+G GKSTL+ ++ NG + P+ + YV S T
Sbjct: 465 GICGPNGCGKSTLMRAIA------NGQV-----DGFPTQEECRTVYVEHDIDGTHSDTSV 513
Query: 130 ETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDP 189
F+F + + K + D +I T+ +A S LSGG + ++++ ++L +
Sbjct: 514 LDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARAVLRNA 567
Query: 190 AVLLLDEPTSGLDS 203
+LLLDEPT+ LD+
Sbjct: 568 DILLLDEPTNHLDT 581
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 48 SSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97
+SKP + +++ S +A++GP+GAGKSTL+++L+ PT+G +
Sbjct: 684 TSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
LSGG++ ++ + P +++LDEPT+ LD S + + LK VI+ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG----VIIITHS 957
Query: 231 PSF 233
F
Sbjct: 958 AEF 960
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 70 AIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVY 129
I GP+G GKSTL ++ NG + P+ + YV S T
Sbjct: 465 GICGPNGCGKSTLXRAIA------NGQV-----DGFPTQEECRTVYVEHDIDGTHSDTSV 513
Query: 130 ETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDP 189
F+F + + K + D +I T+ +A S LSGG + ++++ ++L +
Sbjct: 514 LDFVFESGVGT-KEAIKDKLIEFGFTDEXIAXPISA-----LSGGWKXKLALARAVLRNA 567
Query: 190 AVLLLDEPTSGLDS 203
+LLLDEPT+ LD+
Sbjct: 568 DILLLDEPTNHLDT 581
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 48 SSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97
+SKP + +++ S +A++GP+GAGKSTL+++L+ PT+G +
Sbjct: 684 TSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
LSGG++ ++ + P +++LDEPT+ LD S + + LK VI+ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG----VIIITHS 957
Query: 231 PSF 233
F
Sbjct: 958 AEF 960
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 70 AIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVY 129
I GP+G GKSTL ++ NG + P+ + YV S T
Sbjct: 459 GICGPNGCGKSTLXRAIA------NGQV-----DGFPTQEECRTVYVEHDIDGTHSDTSV 507
Query: 130 ETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDP 189
F+F + + K + D +I T+ +A S LSGG + ++++ ++L +
Sbjct: 508 LDFVFESGVGT-KEAIKDKLIEFGFTDEXIAXPISA-----LSGGWKXKLALARAVLRNA 561
Query: 190 AVLLLDEPTSGLDS 203
+LLLDEPT+ LD+
Sbjct: 562 DILLLDEPTNHLDT 575
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 48 SSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97
+SKP + +++ S +A++GP+GAGKSTL+++L+ PT+G +
Sbjct: 678 TSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
LSGG++ ++ + P +++LDEPT+ LD S + + LK VI+ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG----VIIITHS 951
Query: 231 PSF 233
F
Sbjct: 952 AEF 954
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 118 QHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELR----------LAHLASTR 166
+H + +++V E F L L K +QI +I L E+R L +L +R
Sbjct: 444 KHIGEVTAMSVTEALAFFDGLELTEKEAQIARLI---LREIRDRLGFLQNVGLDYLTLSR 500
Query: 167 LAHNLSGGERRRV----SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHR 222
A LSGGE +R+ IG L + +LDEP+ GL R ++ TLKS+
Sbjct: 501 SAGTLSGGEAQRIRLATQIGSRLTG--VLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGN 557
Query: 223 TVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
T+I+ H + + D ++ + G+ +H G + + T
Sbjct: 558 TLIVVEHDEDTMLAA--DYLIDIGPGAGIHGGEVVAAGT 594
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 115 YVPQHDACIPSLTVYETFLFSARLLVPK-TSQIDTIITVLLTELRLAHLASTRLAHNLSG 173
Y ++ A + +TV + F A +PK +++T+ V L ++L A+T LSG
Sbjct: 796 YKGKNIAEVLDMTVEDALDFFAS--IPKIKRKLETLYDVGLGYMKLGQPATT-----LSG 848
Query: 174 GERRRVSIGLSLL---HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
GE +RV + L + + +LDEPT+GL ++ L + TV++ H
Sbjct: 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVIEH- 906
Query: 231 PSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ ++ T D I+ L G + ++ T
Sbjct: 907 -NLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 118 QHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELR----------LAHLASTR 166
+H + +++V E F L L K +QI +I L E+R L +L +R
Sbjct: 142 KHIGEVTAMSVTEALAFFDGLELTEKEAQIARLI---LREIRDRLGFLQNVGLDYLTLSR 198
Query: 167 LAHNLSGGERRRV----SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHR 222
A LSGGE +R+ IG L + +LDEP+ GL R ++ TLKS+
Sbjct: 199 SAGTLSGGEAQRIRLATQIGSRLT--GVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGN 255
Query: 223 TVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
T+I+ H + + D ++ + G+ +H G + + T
Sbjct: 256 TLIVVEHDEDTMLAA--DYLIDIGPGAGIHGGEVVAAGT 292
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 115 YVPQHDACIPSLTVYETFLFSARLLVPK-TSQIDTIITVLLTELRLAHLASTRLAHNLSG 173
Y ++ A + +TV + F A +PK +++T+ V L ++L A+T LSG
Sbjct: 494 YKGKNIAEVLDMTVEDALDFFAS--IPKIKRKLETLYDVGLGYMKLGQPATT-----LSG 546
Query: 174 GERRRVSIGLSLL---HDPAVLLLDEPTSGL 201
GE +RV + L + + +LDEPT+GL
Sbjct: 547 GEAQRVKLAAELHRRSNGRTLYILDEPTTGL 577
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 154 LTELRLAHLASTRLAHNLSGGERRRV----SIGLSLLHDPAVLLLDEPTSGLDSRSAFNV 209
L ++ L +L +R A LSGGE +R+ IG L + +LDEPT GL R +
Sbjct: 448 LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTG--VIYVLDEPTIGLHPRDTERL 505
Query: 210 MQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243
++TLK + TVI+ H +++ D I+
Sbjct: 506 IKTLKKLR-DLGNTVIVVEHDE--EVIRNADHII 536
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 153 LLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPA---VLLLDEPTSGL---DSRSA 206
+L ++ L ++ + A LSGGE +R+ + L + +LDEPT GL D R
Sbjct: 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKL 847
Query: 207 FNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246
V+ L R TVI+ H + ++ D I+ L
Sbjct: 848 VEVLHRL----VDRGNTVIVIEH--NLDVIKNADHIIDLG 881
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 146 IDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLH---DPAVLLLDEPTSGLD 202
+DT+ V L LRL A+ LSGGE +R+ + L V +LDEPT+GL
Sbjct: 711 LDTLREVGLGYLRLGQPAT-----ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLH 765
Query: 203 SRSAFNVM-QTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ Q +K + A TVI H+ ++++ D +L + G+ G L + T
Sbjct: 766 PADVERLQRQLVKLVDAG--NTVIAVEHK--MQVVAASDWVLDIGPGAGEDGGRLVAQGT 821
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 118 QHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELR----------LAHLASTR 166
+H + + +V E F L L K +QI +I L E+R L +L +R
Sbjct: 444 KHIGEVTAXSVTEALAFFDGLELTEKEAQIARLI---LREIRDRLGFLQNVGLDYLTLSR 500
Query: 167 LAHNLSGGERRRV----SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHR 222
A LSGGE +R+ IG L + +LDEP+ GL R ++ TLKS
Sbjct: 501 SAGTLSGGEAQRIRLATQIGSRLTG--VLYVLDEPSIGLHQRDNDRLIATLKSXR-DLGN 557
Query: 223 TVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261
T+I+ H + + D ++ + G+ +H G + + T
Sbjct: 558 TLIVVEHDEDTXLAA--DYLIDIGPGAGIHGGEVVAAGT 594
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 115 YVPQHDACIPSLTVYETFLFSARLLVPK-TSQIDTIITVLLTELRLAHLASTRLAHNLSG 173
Y ++ A + TV + F A +PK +++T+ V L +L A+T LSG
Sbjct: 796 YKGKNIAEVLDXTVEDALDFFAS--IPKIKRKLETLYDVGLGYXKLGQPATT-----LSG 848
Query: 174 GERRRVSIGLSLL---HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230
GE +RV + L + + +LDEPT+GL ++ L + TV++ H
Sbjct: 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVIEH- 906
Query: 231 PSFKILSTIDRILLLSKGSVVHHGTLASLET 261
+ ++ T D I+ L G + ++ T
Sbjct: 907 -NLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 148 TIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLH---DPAVLLLDEPTSGL--- 201
T++ V L +RL A T LSGGE +RV + L V +LDEPT+GL
Sbjct: 846 TLVDVGLGYVRLGQPAPT-----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFD 900
Query: 202 DSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245
D R NV+ L + TVI+ H + ++ T D I+ L
Sbjct: 901 DIRKLLNVINGL----VDKGNTVIVIEH--NLDVIKTSDWIIDL 938
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 154 LTELRLAHLASTRLAHNLSGGERRRV----SIGLSLLHDPAVLLLDEPTSGLDSRSAFNV 209
L ++ L +L+ +R A LSGGE +R+ IG L+ + +LDEP+ GL R +
Sbjct: 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVG--VLYVLDEPSIGLHQRDNRRL 562
Query: 210 MQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256
++TL + T+I+ H + D I+ + G+ H G +
Sbjct: 563 IETLTRLR-DLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRI 606
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 166 RLAHNLSGGERRRVSIGLSL-LHDPA-----VLLLDEPTSGLDSRSAFNVMQTLKSISAS 219
R A LSGGER +SI L++ L + A +DE S LD+ + + LK +
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE-R 333
Query: 220 RHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253
++ ++ H F DR L ++ G VV+
Sbjct: 334 LNKVIVFITHDREFS--EAFDRKLRITGGVVVNE 365
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILS 87
LKNV + + S I + GP+GAGKS+L + +S
Sbjct: 14 LKNVDIE-FQSGITVVEGPNGAGKSSLFEAIS 44
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 166 RLAHNLSGGERRRVSIGLSL-LHDPA-----VLLLDEPTSGLDSRSAFNVMQTLKSISAS 219
R A LSGGER +SI L+ L + A +DE S LD+ + + LK +
Sbjct: 275 RPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE-R 333
Query: 220 RHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253
++ ++ H F DR L ++ G VV+
Sbjct: 334 LNKVIVFITHDREFS--EAFDRKLRITGGVVVNE 365
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILS 87
LKNV + + S I + GP+GAGKS+L + +S
Sbjct: 14 LKNVDIE-FQSGITVVEGPNGAGKSSLFEAIS 44
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 60 SLTAYPSQILAIVGPSGAGKSTLLDIL 86
SL + ++ AIVGP+G+GKS ++D +
Sbjct: 18 SLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 382
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILS 87
LKNV + + S I + GP+GAGKS+L + +S
Sbjct: 31 LKNVDIE-FQSGITVVEGPNGAGKSSLFEAIS 61
>pdb|2Y50|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum At 2.80 Angstrom Resolution
pdb|2Y6I|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum In Complex With
Isoamylphosphonyl-Gly-Pro-Ala At 3.25 Angstrom
Resolution
Length = 785
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 480 LSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKD--SMPKY 517
L+ AP+Y+ GT++ + G F FSG +KD +MP Y
Sbjct: 178 LNQYAPDYVKGTAVNELIKGIEFDFSGAAYEKDVKTMPWY 217
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 171 LSGGER------RRVSIGLSLLHDPAVLLLDEPTSGLDS---RSAFNVMQT-LKSISASR 220
LSGGER R+++ L L + ++L+LDEPT LD R +M+ LK I
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP--- 140
Query: 221 HRTVILSIHQPSFK 234
VIL H K
Sbjct: 141 --QVILVSHDEELK 152
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 171 LSGGER------RRVSIGLSLLHDPAVLLLDEPTSGLDS---RSAFNVMQT-LKSISASR 220
LSGGER R+++ L L + ++L+LDEPT LD R +M+ LK I
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP--- 145
Query: 221 HRTVILSIHQPSFK 234
VIL H K
Sbjct: 146 --QVILVSHDEELK 157
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 171 LSGGER------RRVSIGLSLLHDPAVLLLDEPTSGLDS---RSAFNVMQT-LKSISASR 220
LSGGER R+++ L L + ++L+LDEPT LD R +M+ LK I
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP--- 114
Query: 221 HRTVILSIHQPSFK 234
VIL H K
Sbjct: 115 --QVILVSHDEELK 126
>pdb|2Y3U|A Chain A, Crystal Structure Of Apo Collagenase G From Clostridium
Histolyticum At 2.55 Angstrom Resolution
Length = 785
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 476 FVLFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYW 518
F L+ AP+Y+ GT++ + G F FSG +KD W
Sbjct: 174 FRENLNQYAPDYVKGTAVNELIKGIEFDFSGAAYEKDVKTXPW 216
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 171 LSGGERR------RVSIGLSLLHDPAVLLLDEPTSGLDS---RSAFNVMQT-LKSISASR 220
LSGGER R+++ L L + ++L+LDEPT LD R +M+ LK I
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP--- 325
Query: 221 HRTVILSIHQPSFK 234
VIL H K
Sbjct: 326 --QVILVSHDEELK 337
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 171 LSGGERR------RVSIGLSLLHDPAVLLLDEPTSGLDS---RSAFNVMQT-LKSISASR 220
LSGGER R+++ L L + ++L+LDEPT LD R +M+ LK I
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP--- 305
Query: 221 HRTVILSIHQPSFK 234
VIL H K
Sbjct: 306 --QVILVSHDEELK 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,002,498
Number of Sequences: 62578
Number of extensions: 557256
Number of successful extensions: 1991
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1717
Number of HSP's gapped (non-prelim): 178
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)