Query 007383
Match_columns 605
No_of_seqs 407 out of 3412
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 22:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 5E-108 1E-112 921.5 58.3 572 19-605 21-613 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 9E-105 2E-109 903.0 62.0 572 22-604 16-617 (617)
3 PLN03211 ABC transporter G-25; 100.0 2E-103 4E-108 893.5 66.6 569 20-600 36-658 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 2E-100 4E-105 928.0 63.5 581 20-600 26-694 (1394)
5 TIGR00956 3a01205 Pleiotropic 100.0 7E-100 2E-104 922.9 61.9 567 20-603 756-1393(1394)
6 PLN03140 ABC transporter G fam 100.0 2.1E-99 5E-104 915.9 62.2 576 21-604 865-1470(1470)
7 PLN03140 ABC transporter G fam 100.0 5.1E-99 1E-103 912.6 58.9 579 19-600 127-789 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 4.5E-95 1E-99 829.6 33.2 551 50-601 801-1384(1391)
9 KOG0065 Pleiotropic drug resis 100.0 1.2E-88 2.6E-93 776.9 42.4 550 51-600 126-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.2E-56 4.8E-61 426.0 24.4 232 23-282 2-238 (240)
11 COG1135 AbcC ABC-type metal io 100.0 2.8E-53 6E-58 423.9 22.8 223 23-259 1-229 (339)
12 COG1125 OpuBA ABC-type proline 100.0 5.6E-53 1.2E-57 410.2 21.4 219 23-260 1-224 (309)
13 COG1131 CcmA ABC-type multidru 100.0 1E-51 2.2E-56 427.6 26.9 224 23-265 4-230 (293)
14 COG1127 Ttg2A ABC-type transpo 100.0 5.7E-52 1.2E-56 401.5 23.3 222 21-260 6-234 (263)
15 COG1120 FepC ABC-type cobalami 100.0 7.2E-52 1.6E-56 413.5 23.1 218 23-259 2-226 (258)
16 COG1136 SalX ABC-type antimicr 100.0 3.3E-51 7.1E-56 401.3 25.1 213 23-250 1-220 (226)
17 COG1116 TauB ABC-type nitrate/ 100.0 4.6E-51 9.9E-56 400.6 23.5 206 22-248 2-207 (248)
18 COG3638 ABC-type phosphate/pho 100.0 3.4E-51 7.3E-56 395.2 20.9 229 22-268 2-244 (258)
19 COG3839 MalK ABC-type sugar tr 100.0 7.4E-51 1.6E-55 420.9 24.6 220 22-260 2-222 (338)
20 COG3842 PotA ABC-type spermidi 100.0 1.2E-50 2.6E-55 421.5 22.7 233 22-281 4-238 (352)
21 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.9E-50 1.1E-54 398.3 25.5 217 22-260 3-226 (254)
22 COG4555 NatA ABC-type Na+ tran 100.0 5.4E-51 1.2E-55 383.8 17.0 221 23-262 1-223 (245)
23 COG1118 CysA ABC-type sulfate/ 100.0 1.4E-49 3.1E-54 396.3 20.1 219 23-260 2-226 (345)
24 COG1124 DppF ABC-type dipeptid 100.0 3.5E-49 7.7E-54 383.9 22.4 224 22-261 2-231 (252)
25 PRK13537 nodulation ABC transp 100.0 1.3E-48 2.9E-53 407.5 28.3 222 20-261 4-227 (306)
26 TIGR02314 ABC_MetN D-methionin 100.0 1.8E-48 3.9E-53 410.7 28.3 222 23-259 1-228 (343)
27 COG2884 FtsE Predicted ATPase 100.0 3.7E-49 8E-54 368.5 19.4 214 23-255 1-220 (223)
28 cd03261 ABC_Org_Solvent_Resist 100.0 4.8E-48 1E-52 388.8 26.8 217 24-259 1-224 (235)
29 COG1122 CbiO ABC-type cobalt t 100.0 2.4E-48 5.1E-53 387.6 24.0 222 22-261 2-228 (235)
30 PRK11650 ugpC glycerol-3-phosp 100.0 6.6E-48 1.4E-52 409.2 28.4 220 23-260 3-223 (356)
31 TIGR03265 PhnT2 putative 2-ami 100.0 8.1E-48 1.7E-52 408.1 28.6 220 22-260 3-223 (353)
32 PRK11432 fbpC ferric transport 100.0 1E-47 2.2E-52 406.7 28.7 219 22-259 5-224 (351)
33 PRK13536 nodulation factor exp 100.0 1.7E-47 3.8E-52 403.6 29.3 222 20-261 38-261 (340)
34 PRK09452 potA putrescine/sperm 100.0 2E-47 4.3E-52 407.4 28.5 221 20-259 11-232 (375)
35 PRK11607 potG putrescine trans 100.0 4.5E-47 9.8E-52 405.2 29.8 222 20-260 16-238 (377)
36 cd03265 ABC_DrrA DrrA is the A 100.0 3.1E-47 6.6E-52 379.2 26.4 217 24-259 1-219 (220)
37 TIGR03258 PhnT 2-aminoethylpho 100.0 3.6E-47 7.8E-52 403.9 28.3 219 23-260 5-227 (362)
38 cd03259 ABC_Carb_Solutes_like 100.0 3.2E-47 7E-52 377.1 25.5 212 24-254 1-213 (213)
39 COG0411 LivG ABC-type branched 100.0 7.3E-48 1.6E-52 375.0 19.6 220 22-260 3-238 (250)
40 COG1117 PstB ABC-type phosphat 100.0 5.6E-48 1.2E-52 366.8 18.2 229 22-280 6-248 (253)
41 PRK10851 sulfate/thiosulfate t 100.0 7.5E-47 1.6E-51 400.7 28.7 219 23-260 2-225 (353)
42 PRK11153 metN DL-methionine tr 100.0 6.2E-47 1.4E-51 400.7 28.0 223 23-260 1-229 (343)
43 TIGR01288 nodI ATP-binding ABC 100.0 8.8E-47 1.9E-51 393.7 28.1 220 22-261 3-224 (303)
44 cd03296 ABC_CysA_sulfate_impor 100.0 1.2E-46 2.6E-51 379.7 27.9 218 23-259 2-224 (239)
45 PRK11000 maltose/maltodextrin 100.0 1.1E-46 2.3E-51 402.3 28.6 219 23-260 3-222 (369)
46 COG3840 ThiQ ABC-type thiamine 100.0 2.1E-47 4.6E-52 354.0 19.8 216 24-260 2-218 (231)
47 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.3E-46 2.7E-51 374.8 26.8 217 24-257 1-219 (220)
48 cd03258 ABC_MetN_methionine_tr 100.0 1.2E-46 2.6E-51 378.1 26.1 222 23-259 1-228 (233)
49 cd03301 ABC_MalK_N The N-termi 100.0 1.7E-46 3.6E-51 371.9 26.2 212 24-254 1-213 (213)
50 COG1137 YhbG ABC-type (unclass 100.0 3.9E-48 8.5E-53 364.1 13.5 219 22-260 3-227 (243)
51 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-46 2.4E-51 374.1 24.7 210 23-250 1-216 (216)
52 cd03256 ABC_PhnC_transporter A 100.0 2E-46 4.4E-51 378.2 26.6 219 24-260 1-233 (241)
53 TIGR03522 GldA_ABC_ATP gliding 100.0 2.5E-46 5.5E-51 389.8 27.8 218 23-261 2-221 (301)
54 cd03218 ABC_YhbG The ABC trans 100.0 2.6E-46 5.6E-51 375.3 26.8 216 24-259 1-220 (232)
55 cd03219 ABC_Mj1267_LivG_branch 100.0 2.4E-46 5.2E-51 376.5 26.4 216 24-259 1-230 (236)
56 PRK13637 cbiO cobalt transport 100.0 4.9E-46 1.1E-50 385.1 29.2 235 23-271 2-247 (287)
57 PRK13643 cbiO cobalt transport 100.0 3.7E-46 8E-51 386.2 28.2 239 23-277 1-252 (288)
58 cd03260 ABC_PstB_phosphate_tra 100.0 1.5E-46 3.3E-51 375.9 24.0 214 24-258 1-226 (227)
59 TIGR01188 drrA daunorubicin re 100.0 1.9E-46 4E-51 391.1 25.2 208 52-262 5-214 (302)
60 cd03269 ABC_putative_ATPase Th 100.0 2.7E-46 5.9E-51 369.7 25.0 210 24-254 1-210 (210)
61 cd03263 ABC_subfamily_A The AB 100.0 3.2E-46 6.9E-51 371.7 25.4 217 24-259 1-219 (220)
62 TIGR02315 ABC_phnC phosphonate 100.0 2.2E-46 4.7E-51 378.5 24.5 219 23-259 1-233 (243)
63 cd03266 ABC_NatA_sodium_export 100.0 3.3E-46 7.2E-51 371.0 25.4 216 23-254 1-218 (218)
64 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.1E-46 4.5E-51 372.5 24.0 211 24-250 1-218 (218)
65 TIGR01186 proV glycine betaine 100.0 3.5E-46 7.6E-51 395.5 26.8 208 51-260 4-218 (363)
66 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.5E-46 1.2E-50 375.6 26.6 218 24-259 1-223 (242)
67 PRK13634 cbiO cobalt transport 100.0 8.4E-46 1.8E-50 383.9 28.3 233 24-271 3-248 (290)
68 PRK11831 putative ABC transpor 100.0 8.3E-46 1.8E-50 380.1 27.7 219 22-259 6-231 (269)
69 PRK09493 glnQ glutamine ABC tr 100.0 8.2E-46 1.8E-50 373.8 27.1 217 23-259 1-223 (240)
70 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.3E-45 2.8E-50 371.4 28.3 218 23-260 1-220 (236)
71 PRK13647 cbiO cobalt transport 100.0 1.4E-45 3.1E-50 379.2 28.7 230 23-271 4-239 (274)
72 PRK13650 cbiO cobalt transport 100.0 1.2E-45 2.6E-50 380.7 28.2 221 23-260 4-228 (279)
73 PRK11629 lolD lipoprotein tran 100.0 1.7E-45 3.6E-50 369.9 27.9 218 23-256 5-229 (233)
74 PRK09536 btuD corrinoid ABC tr 100.0 1E-45 2.2E-50 396.6 27.6 217 23-259 3-226 (402)
75 PRK11264 putative amino-acid A 100.0 1.2E-45 2.5E-50 374.9 26.7 217 23-259 3-231 (250)
76 COG0410 LivF ABC-type branched 100.0 5.6E-46 1.2E-50 359.2 23.0 219 22-260 2-225 (237)
77 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-45 2.4E-50 368.2 25.5 214 24-259 1-219 (222)
78 PRK13631 cbiO cobalt transport 100.0 2.7E-45 5.9E-50 384.3 29.5 234 22-271 20-278 (320)
79 cd03268 ABC_BcrA_bacitracin_re 100.0 1.1E-45 2.4E-50 364.7 24.4 207 24-254 1-208 (208)
80 COG4152 ABC-type uncharacteriz 100.0 2.1E-46 4.6E-51 362.0 18.5 221 23-264 2-222 (300)
81 PRK15079 oligopeptide ABC tran 100.0 3E-45 6.6E-50 385.4 28.9 233 22-260 7-250 (331)
82 PRK13651 cobalt transporter AT 100.0 2.3E-45 5E-50 382.6 27.5 234 23-271 2-267 (305)
83 PRK11248 tauB taurine transpor 100.0 2.9E-45 6.3E-50 373.1 27.7 214 23-257 1-216 (255)
84 PRK13636 cbiO cobalt transport 100.0 3.6E-45 7.8E-50 378.0 28.6 231 23-271 5-244 (283)
85 TIGR02673 FtsE cell division A 100.0 1.7E-45 3.6E-50 365.0 25.0 208 23-249 1-214 (214)
86 PRK13548 hmuV hemin importer A 100.0 4.2E-45 9.1E-50 372.6 27.6 219 23-260 2-229 (258)
87 cd03292 ABC_FtsE_transporter F 100.0 2E-45 4.3E-50 364.3 24.4 208 24-250 1-214 (214)
88 PRK13646 cbiO cobalt transport 100.0 3.2E-45 6.9E-50 378.9 26.9 223 23-260 2-234 (286)
89 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.9E-45 4.1E-50 377.4 24.9 208 51-260 35-249 (269)
90 PRK10070 glycine betaine trans 100.0 4E-45 8.6E-50 391.7 28.4 237 22-260 3-253 (400)
91 TIGR00972 3a0107s01c2 phosphat 100.0 4.2E-45 9.2E-50 370.2 27.1 215 23-259 1-230 (247)
92 cd03264 ABC_drug_resistance_li 100.0 2.3E-45 5E-50 363.3 24.2 209 24-254 1-211 (211)
93 TIGR02211 LolD_lipo_ex lipopro 100.0 4.4E-45 9.6E-50 363.7 26.2 212 24-251 2-220 (221)
94 TIGR03005 ectoine_ehuA ectoine 100.0 5.1E-45 1.1E-49 370.7 26.9 217 24-259 1-234 (252)
95 PRK10895 lipopolysaccharide AB 100.0 4.6E-45 9.9E-50 368.5 26.4 217 23-259 3-224 (241)
96 cd03226 ABC_cobalt_CbiO_domain 100.0 1.6E-45 3.6E-50 362.8 22.5 204 25-251 1-205 (205)
97 cd03257 ABC_NikE_OppD_transpor 100.0 4.2E-45 9.2E-50 365.3 25.8 217 23-254 1-228 (228)
98 PRK10619 histidine/lysine/argi 100.0 6.1E-45 1.3E-49 371.2 27.5 217 23-259 5-239 (257)
99 PRK13635 cbiO cobalt transport 100.0 8.8E-45 1.9E-49 374.2 28.8 220 23-260 5-228 (279)
100 PRK11300 livG leucine/isoleuci 100.0 7.3E-45 1.6E-49 370.0 27.7 218 23-259 5-241 (255)
101 PRK11308 dppF dipeptide transp 100.0 7.7E-45 1.7E-49 382.0 28.6 230 22-260 4-243 (327)
102 PRK13652 cbiO cobalt transport 100.0 7.1E-45 1.5E-49 374.7 27.7 220 23-260 3-226 (277)
103 PRK10908 cell division protein 100.0 6.2E-45 1.3E-49 363.1 26.3 210 23-251 1-216 (222)
104 PRK11124 artP arginine transpo 100.0 6.5E-45 1.4E-49 367.7 26.6 217 23-259 2-228 (242)
105 cd03262 ABC_HisP_GlnQ_permease 100.0 3.7E-45 7.9E-50 362.2 24.1 207 24-250 1-213 (213)
106 PRK11614 livF leucine/isoleuci 100.0 7.5E-45 1.6E-49 366.1 26.5 217 22-260 4-225 (237)
107 PRK13638 cbiO cobalt transport 100.0 1E-44 2.2E-49 372.5 27.7 218 23-260 1-224 (271)
108 PRK13641 cbiO cobalt transport 100.0 7.6E-45 1.7E-49 376.3 27.0 222 23-260 2-233 (287)
109 PRK11247 ssuB aliphatic sulfon 100.0 6.9E-45 1.5E-49 370.4 26.1 209 22-257 11-219 (257)
110 cd03225 ABC_cobalt_CbiO_domain 100.0 4.7E-45 1E-49 361.0 23.2 207 25-249 1-211 (211)
111 PRK11022 dppD dipeptide transp 100.0 1.7E-44 3.6E-49 379.5 28.7 223 23-260 3-242 (326)
112 PRK13644 cbiO cobalt transport 100.0 1E-44 2.2E-49 372.9 26.4 218 23-260 1-223 (274)
113 PRK13633 cobalt transporter AT 100.0 2E-44 4.3E-49 371.9 28.6 225 22-260 3-232 (280)
114 PRK14268 phosphate ABC transpo 100.0 1.5E-44 3.3E-49 368.5 27.4 217 21-259 10-240 (258)
115 PRK13632 cbiO cobalt transport 100.0 1.3E-44 2.8E-49 371.6 27.1 221 22-260 6-230 (271)
116 TIGR03411 urea_trans_UrtD urea 100.0 1.6E-44 3.5E-49 364.7 27.3 216 23-259 2-229 (242)
117 cd03298 ABC_ThiQ_thiamine_tran 100.0 9E-45 2E-49 359.0 24.9 210 24-254 1-211 (211)
118 TIGR02769 nickel_nikE nickel i 100.0 1.4E-44 3E-49 370.3 27.1 228 23-260 2-239 (265)
119 PRK13649 cbiO cobalt transport 100.0 2.4E-44 5.1E-49 371.4 28.3 221 23-259 2-232 (280)
120 TIGR01257 rim_protein retinal- 100.0 3.3E-42 7.1E-47 420.4 51.7 224 21-263 926-1151(2272)
121 PRK13648 cbiO cobalt transport 100.0 3E-44 6.6E-49 368.5 28.7 231 23-271 7-244 (269)
122 PRK09473 oppD oligopeptide tra 100.0 3.1E-44 6.8E-49 377.8 29.5 224 22-260 11-250 (330)
123 PRK10575 iron-hydroxamate tran 100.0 1.9E-44 4E-49 369.3 26.9 219 22-259 10-235 (265)
124 PRK10584 putative ABC transpor 100.0 2.4E-44 5.2E-49 360.2 26.9 214 23-252 6-226 (228)
125 TIGR03410 urea_trans_UrtE urea 100.0 1.5E-44 3.3E-49 362.1 25.5 214 24-259 1-219 (230)
126 PRK10253 iron-enterobactin tra 100.0 2E-44 4.3E-49 369.1 26.6 221 21-260 5-232 (265)
127 PRK13639 cbiO cobalt transport 100.0 3.4E-44 7.4E-49 369.3 28.4 219 23-260 1-225 (275)
128 cd03235 ABC_Metallic_Cations A 100.0 7.7E-45 1.7E-49 360.1 22.6 207 25-254 1-213 (213)
129 PRK14273 phosphate ABC transpo 100.0 2.9E-44 6.3E-49 365.6 27.2 216 22-259 6-236 (254)
130 PRK10771 thiQ thiamine transpo 100.0 3E-44 6.4E-49 360.6 26.9 217 23-260 1-218 (232)
131 PRK11231 fecE iron-dicitrate t 100.0 2.3E-44 5.1E-49 366.5 26.3 217 23-259 2-225 (255)
132 TIGR01978 sufC FeS assembly AT 100.0 2.4E-44 5.2E-49 363.5 26.1 217 24-260 1-233 (243)
133 PRK13645 cbiO cobalt transport 100.0 2.6E-44 5.6E-49 372.8 26.8 222 23-259 6-238 (289)
134 COG4559 ABC-type hemin transpo 100.0 6.6E-45 1.4E-49 345.2 20.3 218 23-260 1-229 (259)
135 PRK14247 phosphate ABC transpo 100.0 4.1E-44 8.8E-49 363.6 27.2 216 23-259 3-232 (250)
136 PRK14267 phosphate ABC transpo 100.0 3.9E-44 8.5E-49 364.4 27.1 217 23-260 4-236 (253)
137 TIGR03415 ABC_choXWV_ATP choli 100.0 2.2E-44 4.7E-49 383.5 26.4 235 24-260 1-253 (382)
138 COG0444 DppD ABC-type dipeptid 100.0 1.8E-44 3.8E-49 365.6 24.4 222 24-259 2-241 (316)
139 PRK09984 phosphonate/organopho 100.0 3.1E-44 6.7E-49 367.1 26.5 218 23-259 4-240 (262)
140 PRK13640 cbiO cobalt transport 100.0 5.4E-44 1.2E-48 369.0 28.5 221 22-260 4-231 (282)
141 cd03234 ABCG_White The White s 100.0 3.6E-44 7.8E-49 358.6 26.3 217 23-254 3-226 (226)
142 PRK14250 phosphate ABC transpo 100.0 3.1E-44 6.8E-49 362.6 25.8 213 23-259 3-219 (241)
143 TIGR01277 thiQ thiamine ABC tr 100.0 4.1E-44 8.9E-49 355.0 26.0 211 24-255 1-212 (213)
144 PRK14235 phosphate transporter 100.0 4.5E-44 9.8E-49 366.8 27.1 218 20-259 16-249 (267)
145 cd03300 ABC_PotA_N PotA is an 100.0 5.6E-44 1.2E-48 358.7 27.1 217 24-259 1-218 (232)
146 PRK15112 antimicrobial peptide 100.0 4.2E-44 9.1E-49 367.1 26.6 228 23-260 4-238 (267)
147 PRK11144 modC molybdate transp 100.0 4.6E-44 1E-48 380.1 27.0 210 23-260 1-217 (352)
148 TIGR03740 galliderm_ABC gallid 100.0 6.3E-44 1.4E-48 356.1 26.1 210 24-258 1-210 (223)
149 TIGR03873 F420-0_ABC_ATP propo 100.0 6E-44 1.3E-48 363.7 26.5 216 24-259 2-224 (256)
150 PRK14242 phosphate transporter 100.0 7.8E-44 1.7E-48 362.2 27.3 215 23-259 6-235 (253)
151 TIGR00968 3a0106s01 sulfate AB 100.0 8.1E-44 1.8E-48 358.7 27.0 218 24-260 1-219 (237)
152 PRK10744 pstB phosphate transp 100.0 8E-44 1.7E-48 363.6 27.3 216 22-259 12-242 (260)
153 PRK13642 cbiO cobalt transport 100.0 1.3E-43 2.7E-48 365.4 29.0 221 23-260 4-228 (277)
154 PRK15093 antimicrobial peptide 100.0 8.6E-44 1.9E-48 375.0 28.2 223 23-260 3-247 (330)
155 cd03299 ABC_ModC_like Archeal 100.0 9.7E-44 2.1E-48 357.7 27.2 216 24-259 1-217 (235)
156 cd03267 ABC_NatA_like Similar 100.0 4.6E-44 1E-48 360.3 24.7 228 25-254 2-236 (236)
157 TIGR02142 modC_ABC molybdenum 100.0 8.2E-44 1.8E-48 378.7 27.2 199 58-260 15-220 (354)
158 PRK14241 phosphate transporter 100.0 1.2E-43 2.7E-48 361.8 27.4 216 23-259 4-240 (258)
159 PRK11701 phnK phosphonate C-P 100.0 1.7E-43 3.7E-48 360.7 27.3 218 23-259 6-239 (258)
160 PRK13547 hmuV hemin importer A 100.0 1.3E-43 2.7E-48 364.0 25.8 218 23-259 1-242 (272)
161 cd03297 ABC_ModC_molybdenum_tr 100.0 1.2E-43 2.7E-48 351.7 24.8 192 58-254 16-214 (214)
162 PRK14245 phosphate ABC transpo 100.0 2.2E-43 4.8E-48 358.3 27.1 217 22-260 2-233 (250)
163 COG4175 ProV ABC-type proline/ 100.0 1.9E-44 4.1E-49 359.9 18.6 237 22-260 3-253 (386)
164 COG4181 Predicted ABC-type tra 100.0 2.2E-44 4.7E-49 330.7 17.5 214 23-252 6-226 (228)
165 PRK14269 phosphate ABC transpo 100.0 2.4E-43 5.2E-48 357.2 26.7 215 23-259 2-228 (246)
166 PRK14259 phosphate ABC transpo 100.0 2E-43 4.4E-48 362.3 26.4 216 22-260 12-252 (269)
167 PRK14274 phosphate ABC transpo 100.0 2.8E-43 6E-48 359.4 27.1 217 21-259 10-241 (259)
168 PRK14270 phosphate ABC transpo 100.0 3.3E-43 7.1E-48 357.2 27.1 216 22-259 3-233 (251)
169 PRK14256 phosphate ABC transpo 100.0 4.1E-43 9E-48 356.7 27.6 216 23-259 4-234 (252)
170 PRK14254 phosphate ABC transpo 100.0 6.2E-43 1.4E-47 361.5 29.3 216 21-259 37-267 (285)
171 COG4525 TauB ABC-type taurine 100.0 9.8E-44 2.1E-48 332.8 20.5 222 22-262 2-225 (259)
172 PRK14248 phosphate ABC transpo 100.0 5.7E-43 1.2E-47 358.9 28.0 215 23-259 21-250 (268)
173 PRK14239 phosphate transporter 100.0 5.8E-43 1.3E-47 355.4 27.8 215 23-259 5-234 (252)
174 PRK10418 nikD nickel transport 100.0 5.7E-43 1.2E-47 356.1 27.2 216 23-260 4-229 (254)
175 PRK14262 phosphate ABC transpo 100.0 5.9E-43 1.3E-47 355.1 27.2 216 23-260 3-233 (250)
176 TIGR01184 ntrCD nitrate transp 100.0 2E-43 4.4E-48 354.2 23.4 199 56-258 1-201 (230)
177 PRK14237 phosphate transporter 100.0 7.1E-43 1.5E-47 358.0 27.8 217 21-259 18-249 (267)
178 PRK14272 phosphate ABC transpo 100.0 7E-43 1.5E-47 354.9 27.5 218 22-260 3-235 (252)
179 PRK14258 phosphate ABC transpo 100.0 7.3E-43 1.6E-47 356.7 27.6 218 23-260 7-244 (261)
180 PRK14240 phosphate transporter 100.0 9E-43 2E-47 353.7 27.5 215 23-259 3-232 (250)
181 PRK10419 nikE nickel transport 100.0 6.4E-43 1.4E-47 358.5 26.6 227 23-259 3-239 (268)
182 TIGR02982 heterocyst_DevA ABC 100.0 4.4E-43 9.5E-48 349.4 24.6 211 24-250 2-219 (220)
183 TIGR02770 nickel_nikD nickel i 100.0 3.4E-43 7.4E-48 352.5 23.9 204 55-260 1-214 (230)
184 COG1123 ATPase components of v 100.0 3.9E-43 8.4E-48 379.6 25.9 232 20-259 277-517 (539)
185 PRK10762 D-ribose transporter 100.0 3.2E-43 7E-48 391.3 25.9 217 23-259 4-228 (501)
186 TIGR02323 CP_lyasePhnK phospho 100.0 7.8E-43 1.7E-47 354.8 26.4 218 23-259 3-236 (253)
187 cd03233 ABC_PDR_domain1 The pl 100.0 6.4E-43 1.4E-47 343.7 24.9 195 23-254 3-202 (202)
188 PRK13549 xylose transporter AT 100.0 3.7E-43 8E-48 391.2 25.8 217 23-259 5-230 (506)
189 TIGR03608 L_ocin_972_ABC putat 100.0 4E-43 8.8E-48 345.7 22.9 190 52-245 10-206 (206)
190 PRK14244 phosphate ABC transpo 100.0 8.9E-43 1.9E-47 354.0 26.1 215 23-259 5-235 (251)
191 PRK14251 phosphate ABC transpo 100.0 1.3E-42 2.8E-47 352.8 26.9 215 23-259 4-233 (251)
192 PRK14236 phosphate transporter 100.0 1.8E-42 3.9E-47 355.9 28.1 216 22-259 24-254 (272)
193 COG4988 CydD ABC-type transpor 100.0 3.1E-43 6.8E-48 378.8 23.3 215 19-260 316-542 (559)
194 PRK14253 phosphate ABC transpo 100.0 1.1E-42 2.5E-47 352.8 26.1 215 23-259 3-231 (249)
195 PRK14271 phosphate ABC transpo 100.0 2.2E-42 4.7E-47 355.9 28.2 218 21-260 19-250 (276)
196 PRK09700 D-allose transporter 100.0 6.5E-43 1.4E-47 389.7 26.2 217 23-259 5-232 (510)
197 COG2274 SunT ABC-type bacterio 100.0 2.9E-43 6.2E-48 398.8 23.4 216 21-262 469-697 (709)
198 PRK14260 phosphate ABC transpo 100.0 1.7E-42 3.6E-47 353.7 26.8 215 23-259 7-241 (259)
199 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-42 2.4E-47 387.6 27.7 213 23-259 11-227 (510)
200 PRK15056 manganese/iron transp 100.0 1.3E-42 2.9E-47 356.9 25.8 219 21-259 4-228 (272)
201 PRK14238 phosphate transporter 100.0 1.8E-42 3.8E-47 355.8 26.7 215 23-259 24-253 (271)
202 PRK14275 phosphate ABC transpo 100.0 2.1E-42 4.7E-47 357.7 27.5 217 21-259 37-268 (286)
203 COG1123 ATPase components of v 100.0 9.9E-43 2.1E-47 376.4 25.8 225 23-261 5-244 (539)
204 PRK14249 phosphate ABC transpo 100.0 2.6E-42 5.6E-47 350.6 27.4 215 23-259 4-233 (251)
205 PRK10261 glutathione transport 100.0 1.7E-42 3.6E-47 394.1 28.9 231 22-260 312-552 (623)
206 PRK14261 phosphate ABC transpo 100.0 2.6E-42 5.7E-47 351.0 27.1 215 23-259 6-235 (253)
207 KOG0058 Peptide exporter, ABC 100.0 4.8E-43 1E-47 383.8 22.2 216 23-261 465-691 (716)
208 PRK10247 putative ABC transpor 100.0 1.5E-42 3.3E-47 346.7 23.9 211 22-255 6-221 (225)
209 PRK14255 phosphate ABC transpo 100.0 4.4E-42 9.6E-47 349.1 27.4 216 22-259 4-234 (252)
210 PRK13543 cytochrome c biogenes 100.0 3.1E-42 6.8E-47 341.9 25.4 203 22-247 10-212 (214)
211 cd03252 ABCC_Hemolysin The ABC 100.0 1.4E-42 3E-47 349.5 22.6 214 24-260 1-224 (237)
212 PRK11174 cysteine/glutathione 100.0 1.6E-42 3.4E-47 393.2 25.7 211 22-260 348-571 (588)
213 TIGR03269 met_CoM_red_A2 methy 100.0 2.6E-42 5.7E-47 385.7 27.0 220 24-262 1-259 (520)
214 PRK13538 cytochrome c biogenes 100.0 3.6E-42 7.7E-47 338.9 24.6 200 23-245 1-202 (204)
215 PRK14243 phosphate transporter 100.0 4.3E-42 9.3E-47 351.6 26.1 215 23-260 10-247 (264)
216 CHL00131 ycf16 sulfate ABC tra 100.0 9.5E-42 2.1E-46 346.5 28.0 218 22-259 6-239 (252)
217 COG4604 CeuD ABC-type enteroch 100.0 8.9E-44 1.9E-48 333.7 12.0 219 23-260 1-224 (252)
218 COG4598 HisP ABC-type histidin 100.0 2E-43 4.3E-48 326.5 14.1 218 22-259 5-239 (256)
219 PRK14265 phosphate ABC transpo 100.0 7.4E-42 1.6E-46 351.7 27.2 217 21-260 18-257 (274)
220 cd03213 ABCG_EPDR ABCG transpo 100.0 5.2E-42 1.1E-46 335.2 24.6 191 22-254 2-194 (194)
221 TIGR01257 rim_protein retinal- 100.0 3.2E-42 6.9E-47 420.5 28.3 225 22-264 1936-2162(2272)
222 PRK14246 phosphate ABC transpo 100.0 7.8E-42 1.7E-46 348.3 26.4 218 22-260 9-240 (257)
223 cd03251 ABCC_MsbA MsbA is an e 100.0 2.5E-42 5.4E-47 346.9 22.2 214 24-260 1-224 (234)
224 PRK10261 glutathione transport 100.0 4.2E-42 9E-47 390.9 26.8 222 23-259 12-256 (623)
225 TIGR02633 xylG D-xylose ABC tr 100.0 4.6E-42 9.9E-47 382.1 26.5 217 23-259 1-228 (500)
226 TIGR03269 met_CoM_red_A2 methy 100.0 6.9E-42 1.5E-46 382.4 27.5 226 21-261 277-517 (520)
227 PRK14266 phosphate ABC transpo 100.0 1.4E-41 3E-46 345.1 26.9 216 22-259 2-232 (250)
228 PRK14263 phosphate ABC transpo 100.0 1.8E-41 3.9E-46 346.4 27.5 216 22-260 7-244 (261)
229 PRK14252 phosphate ABC transpo 100.0 2.2E-41 4.8E-46 346.6 27.8 218 20-259 13-247 (265)
230 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.8E-42 1.3E-46 394.9 26.4 209 23-260 451-672 (686)
231 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.2E-42 9.2E-47 346.2 22.1 216 24-261 1-226 (238)
232 PRK15134 microcin C ABC transp 100.0 1E-41 2.2E-46 381.6 27.6 222 23-259 5-244 (529)
233 cd03245 ABCC_bacteriocin_expor 100.0 3.9E-42 8.5E-47 342.3 21.5 205 24-254 3-220 (220)
234 PRK15134 microcin C ABC transp 100.0 8.1E-42 1.8E-46 382.4 26.5 229 22-259 274-513 (529)
235 PRK09580 sufC cysteine desulfu 100.0 2.3E-41 5E-46 342.9 27.0 226 23-268 1-241 (248)
236 PRK11288 araG L-arabinose tran 100.0 1.1E-41 2.4E-46 378.9 26.9 214 23-256 4-224 (501)
237 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.2E-42 1.3E-46 342.1 22.3 192 51-254 33-224 (224)
238 PRK10982 galactose/methyl gala 100.0 7.3E-42 1.6E-46 379.6 25.1 213 27-259 2-221 (491)
239 cd03232 ABC_PDR_domain2 The pl 100.0 1.4E-41 3.1E-46 331.6 24.1 187 23-254 3-192 (192)
240 PRK14257 phosphate ABC transpo 100.0 2.6E-41 5.6E-46 355.3 27.7 219 22-260 79-312 (329)
241 cd03231 ABC_CcmA_heme_exporter 100.0 1.2E-41 2.7E-46 334.3 23.5 196 24-245 1-198 (201)
242 cd03254 ABCC_Glucan_exporter_l 100.0 7.1E-42 1.5E-46 342.5 22.2 214 23-260 2-225 (229)
243 KOG0055 Multidrug/pheromone ex 100.0 3.6E-40 7.8E-45 379.4 39.2 217 20-261 347-576 (1228)
244 COG4172 ABC-type uncharacteriz 100.0 1.4E-41 3.1E-46 348.1 24.5 234 18-259 271-514 (534)
245 COG4987 CydC ABC-type transpor 100.0 1.6E-42 3.4E-47 367.7 18.0 213 23-261 336-561 (573)
246 PRK13546 teichoic acids export 100.0 4.6E-41 1E-45 343.5 28.3 228 21-261 2-232 (264)
247 PRK11176 lipid transporter ATP 100.0 7.6E-42 1.6E-46 387.2 24.5 213 23-260 341-566 (582)
248 PRK09544 znuC high-affinity zi 100.0 2E-41 4.4E-46 343.9 25.0 202 23-259 4-207 (251)
249 cd03230 ABC_DR_subfamily_A Thi 100.0 1.4E-41 3E-46 326.1 22.1 171 24-250 1-173 (173)
250 PRK14264 phosphate ABC transpo 100.0 4.4E-41 9.6E-46 350.9 27.7 216 22-259 44-287 (305)
251 PRK10790 putative multidrug tr 100.0 1.5E-41 3.3E-46 385.4 26.2 211 22-260 339-562 (592)
252 PRK13539 cytochrome c biogenes 100.0 3.2E-41 7E-46 332.9 24.5 199 23-247 2-200 (207)
253 PRK13549 xylose transporter AT 100.0 1.3E-41 2.8E-46 378.8 24.4 222 21-259 257-492 (506)
254 PRK11160 cysteine/glutathione 100.0 2.1E-41 4.6E-46 382.3 25.9 213 22-260 337-561 (574)
255 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-41 2.7E-46 393.7 24.5 211 23-261 477-700 (710)
256 cd03253 ABCC_ATM1_transporter 100.0 2.5E-41 5.4E-46 340.1 23.5 213 24-260 1-223 (236)
257 PRK03695 vitamin B12-transport 100.0 2.8E-41 6E-46 342.5 23.8 200 55-259 11-220 (248)
258 TIGR02324 CP_lyasePhnL phospho 100.0 3.2E-41 6.8E-46 336.8 23.8 211 23-246 1-223 (224)
259 TIGR03375 type_I_sec_LssB type 100.0 2.2E-41 4.8E-46 390.6 26.0 214 23-262 463-689 (694)
260 cd03229 ABC_Class3 This class 100.0 1.8E-41 4E-46 326.8 21.0 173 24-249 1-178 (178)
261 TIGR00958 3a01208 Conjugate Tr 100.0 2E-41 4.4E-46 391.1 25.0 212 23-261 478-702 (711)
262 COG4161 ArtP ABC-type arginine 100.0 8.8E-42 1.9E-46 310.5 16.9 217 23-259 2-228 (242)
263 TIGR01189 ccmA heme ABC export 100.0 5.4E-41 1.2E-45 328.9 23.9 195 24-244 1-197 (198)
264 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.6E-41 1E-45 330.0 23.3 190 24-265 1-197 (200)
265 PRK13657 cyclic beta-1,2-gluca 100.0 3.8E-41 8.3E-46 381.7 25.7 211 23-260 334-557 (588)
266 cd03244 ABCC_MRP_domain2 Domai 100.0 3.2E-41 7E-46 335.9 21.8 204 24-255 3-220 (221)
267 PRK09700 D-allose transporter 100.0 3.4E-41 7.3E-46 375.9 24.1 213 22-256 264-493 (510)
268 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.3E-41 9.4E-46 345.2 23.0 210 23-261 2-225 (275)
269 TIGR01193 bacteriocin_ABC ABC- 100.0 3E-41 6.4E-46 390.4 24.5 212 23-261 473-697 (708)
270 TIGR01166 cbiO cobalt transpor 100.0 4.1E-41 8.9E-46 327.6 21.5 178 52-232 4-188 (190)
271 KOG0057 Mitochondrial Fe/S clu 100.0 2.7E-41 5.8E-46 358.7 21.7 216 18-261 346-574 (591)
272 PRK10938 putative molybdenum t 100.0 3.5E-41 7.6E-46 374.1 23.1 209 23-259 3-222 (490)
273 cd03248 ABCC_TAP TAP, the Tran 100.0 3.8E-41 8.2E-46 336.7 20.8 211 20-250 8-226 (226)
274 COG1129 MglA ABC-type sugar tr 100.0 6.5E-41 1.4E-45 360.1 24.1 215 21-255 6-228 (500)
275 PRK13540 cytochrome c biogenes 100.0 8.5E-41 1.8E-45 328.1 22.6 195 23-243 1-197 (200)
276 COG4619 ABC-type uncharacteriz 100.0 2.5E-42 5.4E-47 316.2 10.1 196 51-250 14-212 (223)
277 PRK13545 tagH teichoic acids e 100.0 3.4E-40 7.4E-45 358.0 28.3 196 53-261 37-232 (549)
278 TIGR02633 xylG D-xylose ABC tr 100.0 1E-40 2.2E-45 371.2 24.4 220 22-258 256-489 (500)
279 cd03215 ABC_Carb_Monos_II This 100.0 1.2E-40 2.7E-45 322.1 21.5 172 23-250 4-182 (182)
280 COG1132 MdlB ABC-type multidru 100.0 1.8E-40 3.9E-45 374.7 25.4 215 22-261 327-552 (567)
281 PRK10762 D-ribose transporter 100.0 1.7E-40 3.7E-45 369.4 24.9 202 55-259 267-482 (501)
282 cd03214 ABC_Iron-Siderophores_ 100.0 7.4E-41 1.6E-45 323.2 19.0 177 25-254 1-180 (180)
283 PRK10535 macrolide transporter 100.0 1.9E-39 4E-44 370.5 33.8 220 23-259 4-230 (648)
284 TIGR01842 type_I_sec_PrtD type 100.0 2.2E-40 4.7E-45 372.2 25.6 216 23-260 316-541 (544)
285 cd03288 ABCC_SUR2 The SUR doma 100.0 2.6E-40 5.6E-45 337.2 23.1 214 23-260 19-242 (257)
286 cd03247 ABCC_cytochrome_bd The 100.0 1.8E-40 3.9E-45 319.8 20.7 176 24-254 1-178 (178)
287 TIGR02204 MsbA_rel ABC transpo 100.0 2.6E-40 5.6E-45 374.2 25.4 214 22-260 336-562 (576)
288 cd03246 ABCC_Protease_Secretio 100.0 1.7E-40 3.7E-45 318.6 20.3 170 24-250 1-173 (173)
289 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.6E-40 7.7E-45 325.3 22.9 199 23-256 6-207 (207)
290 COG4148 ModC ABC-type molybdat 100.0 2.6E-41 5.6E-46 332.2 14.5 196 57-260 15-217 (352)
291 TIGR01846 type_I_sec_HlyB type 100.0 2.5E-40 5.3E-45 381.8 25.2 213 22-260 454-679 (694)
292 TIGR02203 MsbA_lipidA lipid A 100.0 2.3E-40 4.9E-45 374.3 24.2 213 23-260 330-555 (571)
293 TIGR03771 anch_rpt_ABC anchore 100.0 2.9E-40 6.3E-45 329.8 22.1 193 61-259 1-199 (223)
294 TIGR01187 potA spermidine/putr 100.0 2.7E-40 5.8E-45 347.8 22.6 188 71-260 1-189 (325)
295 TIGR01192 chvA glucan exporter 100.0 7E-40 1.5E-44 370.7 26.2 214 23-260 334-557 (585)
296 COG3845 ABC-type uncharacteriz 100.0 3.3E-40 7.1E-45 347.9 21.7 214 22-255 3-223 (501)
297 PRK11288 araG L-arabinose tran 100.0 3.6E-40 7.9E-45 366.8 22.8 203 54-259 267-483 (501)
298 PRK10789 putative multidrug tr 100.0 9.8E-40 2.1E-44 368.6 25.2 212 23-260 313-537 (569)
299 COG4674 Uncharacterized ABC-ty 100.0 2.4E-40 5.3E-45 310.1 16.1 218 22-260 4-234 (249)
300 COG4586 ABC-type uncharacteriz 100.0 1.8E-40 3.9E-45 325.7 15.3 239 22-264 2-249 (325)
301 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-39 3.1E-44 362.5 23.7 202 55-259 278-490 (510)
302 PRK13541 cytochrome c biogenes 100.0 3.4E-39 7.3E-44 315.5 22.8 193 23-243 1-193 (195)
303 cd03250 ABCC_MRP_domain1 Domai 100.0 1.8E-39 3.9E-44 319.6 20.8 190 24-249 1-204 (204)
304 PRK15064 ABC transporter ATP-b 100.0 3.7E-39 8.1E-44 361.0 25.5 207 23-260 1-241 (530)
305 PRK10938 putative molybdenum t 100.0 2.9E-39 6.2E-44 358.8 24.3 215 21-254 258-485 (490)
306 cd03228 ABCC_MRP_Like The MRP 100.0 2E-39 4.3E-44 310.6 19.8 168 24-249 1-171 (171)
307 cd03216 ABC_Carb_Monos_I This 100.0 4.3E-39 9.4E-44 305.9 21.5 158 24-252 1-162 (163)
308 PTZ00265 multidrug resistance 100.0 2.1E-39 4.5E-44 395.3 24.2 215 23-260 1165-1451(1466)
309 cd03290 ABCC_SUR1_N The SUR do 100.0 4E-39 8.7E-44 320.4 21.8 197 25-249 2-218 (218)
310 COG0396 sufC Cysteine desulfur 100.0 1E-38 2.2E-43 307.5 23.7 229 22-270 2-242 (251)
311 COG1119 ModF ABC-type molybden 100.0 2.9E-39 6.2E-44 314.9 19.2 218 19-255 27-256 (257)
312 COG4608 AppF ABC-type oligopep 100.0 4.1E-39 8.8E-44 320.2 20.7 196 22-260 3-198 (268)
313 TIGR02868 CydC thiol reductant 100.0 2.7E-39 5.9E-44 362.3 22.0 185 22-231 333-529 (529)
314 PRK10982 galactose/methyl gala 100.0 5.5E-39 1.2E-43 356.6 23.9 214 22-257 249-476 (491)
315 PRK15177 Vi polysaccharide exp 100.0 9E-39 1.9E-43 316.8 22.3 194 54-264 1-195 (213)
316 PRK11819 putative ABC transpor 100.0 1E-38 2.2E-43 359.1 25.5 207 22-259 5-248 (556)
317 PRK10522 multidrug transporter 100.0 9.1E-39 2E-43 359.2 24.9 202 23-253 322-530 (547)
318 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.4E-38 3.1E-43 322.0 23.0 190 55-259 9-205 (246)
319 cd03223 ABCD_peroxisomal_ALDP 100.0 1.4E-38 3.1E-43 303.2 21.4 163 24-248 1-163 (166)
320 PLN03232 ABC transporter C fam 100.0 8.6E-39 1.9E-43 392.8 25.0 211 23-260 1234-1457(1495)
321 PRK15064 ABC transporter ATP-b 100.0 1.9E-38 4.1E-43 355.4 25.7 204 21-260 317-524 (530)
322 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.5E-38 9.8E-43 324.0 26.3 199 20-260 36-246 (282)
323 TIGR02857 CydD thiol reductant 100.0 8.7E-39 1.9E-43 358.2 22.5 197 23-245 320-529 (529)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.1E-38 4.5E-43 356.5 25.5 207 22-259 3-246 (552)
325 PLN03130 ABC transporter C fam 100.0 1.4E-38 3E-43 391.5 26.1 211 23-260 1237-1460(1622)
326 KOG0055 Multidrug/pheromone ex 100.0 1.4E-38 3E-43 366.3 23.4 218 23-261 987-1213(1228)
327 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.3E-38 9.3E-43 354.1 23.9 207 22-253 336-551 (555)
328 PRK11819 putative ABC transpor 100.0 1.8E-37 3.8E-42 349.1 27.2 206 21-259 322-531 (556)
329 PRK13409 putative ATPase RIL; 100.0 1.1E-37 2.4E-42 350.7 25.5 200 21-256 338-537 (590)
330 PTZ00265 multidrug resistance 100.0 5.4E-38 1.2E-42 382.9 24.5 209 23-248 382-655 (1466)
331 COG4618 ArpD ABC-type protease 100.0 5.9E-38 1.3E-42 330.2 21.4 223 18-264 329-563 (580)
332 COG4172 ABC-type uncharacteriz 100.0 6.5E-38 1.4E-42 321.2 20.8 225 21-259 4-245 (534)
333 TIGR00957 MRP_assoc_pro multi 100.0 7.4E-38 1.6E-42 385.1 25.4 212 23-261 1284-1508(1522)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.8E-37 8.3E-42 346.2 27.1 206 21-259 320-529 (552)
335 PTZ00243 ABC transporter; Prov 100.0 1.5E-37 3.3E-42 381.6 25.5 211 23-260 1308-1532(1560)
336 KOG0056 Heavy metal exporter H 100.0 2.5E-38 5.5E-43 329.2 14.9 227 12-261 526-761 (790)
337 COG1134 TagH ABC-type polysacc 100.0 9.7E-37 2.1E-41 297.6 24.0 233 22-266 2-241 (249)
338 PRK10636 putative ABC transpor 100.0 7.3E-37 1.6E-41 348.4 25.7 204 20-260 309-516 (638)
339 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.5E-37 5.5E-42 314.2 18.5 191 53-254 14-220 (255)
340 COG1101 PhnK ABC-type uncharac 100.0 3.2E-37 6.9E-42 293.5 16.7 217 24-254 2-231 (263)
341 PRK11147 ABC transporter ATPas 100.0 1.3E-36 2.9E-41 346.7 24.9 207 20-259 316-526 (635)
342 TIGR01271 CFTR_protein cystic 100.0 1.7E-36 3.7E-41 372.1 25.6 210 23-260 1217-1439(1490)
343 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.9E-36 8.6E-41 279.7 19.7 144 24-249 1-144 (144)
344 PLN03073 ABC transporter F fam 100.0 9.3E-36 2E-40 341.0 26.9 206 22-262 507-715 (718)
345 COG4167 SapF ABC-type antimicr 100.0 1.9E-36 4.1E-41 280.9 16.9 228 23-259 4-237 (267)
346 cd03222 ABC_RNaseL_inhibitor T 100.0 3.9E-36 8.5E-41 288.4 19.4 148 51-258 11-160 (177)
347 PRK10636 putative ABC transpor 100.0 8.7E-36 1.9E-40 339.6 25.0 205 23-259 1-234 (638)
348 KOG0059 Lipid exporter ABCA1 a 100.0 2.8E-36 6E-41 353.8 19.5 224 22-264 563-790 (885)
349 TIGR00954 3a01203 Peroxysomal 100.0 8.2E-36 1.8E-40 341.0 22.5 194 23-247 451-653 (659)
350 PRK11147 ABC transporter ATPas 100.0 3.4E-35 7.4E-40 335.1 25.5 204 23-259 3-241 (635)
351 COG4133 CcmA ABC-type transpor 100.0 7.5E-36 1.6E-40 279.3 14.6 178 51-233 13-192 (209)
352 PLN03232 ABC transporter C fam 100.0 3.4E-35 7.3E-40 361.2 23.8 203 23-260 614-827 (1495)
353 PLN03130 ABC transporter C fam 100.0 1E-34 2.2E-39 357.3 25.3 202 23-260 614-827 (1622)
354 cd03238 ABC_UvrA The excision 100.0 9.3E-35 2E-39 278.7 19.4 157 52-250 7-166 (176)
355 COG4107 PhnK ABC-type phosphon 100.0 3.4E-35 7.5E-40 270.5 14.8 214 23-259 6-239 (258)
356 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.8E-34 4E-39 272.2 19.7 153 26-249 2-157 (157)
357 COG4136 ABC-type uncharacteriz 100.0 6.1E-35 1.3E-39 263.0 15.2 202 23-245 2-207 (213)
358 PRK13409 putative ATPase RIL; 100.0 6.3E-35 1.4E-39 328.5 18.0 182 53-248 87-287 (590)
359 TIGR00957 MRP_assoc_pro multi 100.0 4.1E-34 9E-39 352.0 25.8 202 23-260 636-849 (1522)
360 COG5265 ATM1 ABC-type transpor 100.0 9.4E-35 2E-39 300.0 15.2 218 19-261 258-486 (497)
361 TIGR01271 CFTR_protein cystic 100.0 2.2E-33 4.7E-38 344.7 22.5 189 53-260 439-635 (1490)
362 COG0488 Uup ATPase components 100.0 3.2E-33 6.8E-38 307.8 20.9 206 22-259 2-238 (530)
363 PLN03073 ABC transporter F fam 100.0 2E-33 4.4E-38 321.8 18.2 216 20-259 174-429 (718)
364 KOG0054 Multidrug resistance-a 100.0 2.1E-32 4.6E-37 322.2 22.5 212 23-261 1138-1362(1381)
365 PTZ00243 ABC transporter; Prov 100.0 3E-32 6.6E-37 335.0 22.7 191 52-260 672-869 (1560)
366 COG4778 PhnL ABC-type phosphon 100.0 7.3E-33 1.6E-37 254.4 12.3 214 22-247 3-227 (235)
367 KOG0054 Multidrug resistance-a 100.0 2E-29 4.3E-34 297.2 41.8 206 20-260 515-730 (1381)
368 cd03270 ABC_UvrA_I The excisio 100.0 1.7E-31 3.6E-36 267.1 19.8 192 51-254 6-226 (226)
369 COG0488 Uup ATPase components 100.0 7.2E-31 1.6E-35 289.1 21.9 206 19-261 317-525 (530)
370 PF00005 ABC_tran: ABC transpo 100.0 9.2E-32 2E-36 247.4 12.0 131 56-199 1-137 (137)
371 cd03271 ABC_UvrA_II The excisi 100.0 2.2E-30 4.7E-35 262.9 19.0 195 52-256 7-261 (261)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 2.8E-30 6.1E-35 252.8 12.8 164 57-247 14-190 (197)
373 COG1129 MglA ABC-type sugar tr 100.0 2.9E-29 6.4E-34 270.2 21.2 200 55-257 274-486 (500)
374 COG4138 BtuD ABC-type cobalami 100.0 1E-30 2.3E-35 241.2 6.1 196 56-260 15-220 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 7.8E-29 1.7E-33 250.4 13.4 183 51-246 13-234 (243)
376 COG4615 PvdE ABC-type sideroph 100.0 5.9E-29 1.3E-33 254.6 11.3 203 22-254 321-530 (546)
377 COG3845 ABC-type uncharacteriz 99.9 8.6E-27 1.9E-31 246.5 21.7 222 20-259 254-490 (501)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3E-29 6.6E-34 248.2 2.9 176 51-247 15-204 (212)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6.5E-28 1.4E-32 245.1 10.5 176 66-246 25-242 (251)
380 cd03240 ABC_Rad50 The catalyti 99.9 1.7E-27 3.6E-32 234.5 12.3 167 58-247 15-197 (204)
381 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.1E-26 2.5E-31 230.2 15.9 179 57-249 18-210 (213)
382 KOG0927 Predicted transporter 99.9 6.3E-27 1.4E-31 248.5 12.3 207 20-260 386-595 (614)
383 COG4178 ABC-type uncharacteriz 99.9 7.9E-26 1.7E-30 248.1 17.6 193 21-246 390-587 (604)
384 PRK00635 excinuclease ABC subu 99.9 3.1E-25 6.8E-30 268.2 23.5 201 55-260 610-905 (1809)
385 PRK00349 uvrA excinuclease ABC 99.9 3.4E-25 7.4E-30 258.0 21.1 125 126-260 792-926 (943)
386 COG1245 Predicted ATPase, RNas 99.9 7.3E-25 1.6E-29 228.3 18.0 190 21-246 340-530 (591)
387 COG4170 SapD ABC-type antimicr 99.9 2.2E-25 4.7E-30 211.5 10.9 223 24-260 4-247 (330)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.5E-24 3.2E-29 212.6 15.1 171 56-249 12-192 (198)
389 TIGR00630 uvra excinuclease AB 99.9 1.3E-23 2.9E-28 244.4 22.7 125 125-259 789-923 (924)
390 KOG0927 Predicted transporter 99.9 1.7E-24 3.7E-29 230.0 12.7 209 23-259 75-307 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.2E-24 4.8E-29 218.7 8.7 176 64-247 21-233 (247)
392 KOG0066 eIF2-interacting prote 99.9 1.6E-23 3.4E-28 216.5 13.8 205 18-258 581-788 (807)
393 KOG2355 Predicted ABC-type tra 99.9 7.2E-23 1.6E-27 193.9 16.4 215 19-261 9-237 (291)
394 KOG0060 Long-chain acyl-CoA tr 99.9 7.9E-23 1.7E-27 218.8 18.5 200 21-247 431-641 (659)
395 KOG0062 ATPase component of AB 99.9 3.4E-23 7.4E-28 219.1 9.8 228 21-283 78-311 (582)
396 PF01061 ABC2_membrane: ABC-2 99.9 5.6E-24 1.2E-28 208.0 1.4 208 329-539 1-210 (210)
397 KOG0062 ATPase component of AB 99.9 7.4E-22 1.6E-26 209.0 14.5 207 19-258 358-566 (582)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.5E-21 5.5E-26 191.8 13.1 169 56-249 14-211 (213)
399 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.1E-21 2.5E-26 192.6 9.7 147 55-254 16-172 (200)
400 COG1245 Predicted ATPase, RNas 99.8 1.8E-21 3.9E-26 203.2 10.2 170 63-247 97-288 (591)
401 COG2401 ABC-type ATPase fused 99.8 2.1E-20 4.5E-25 193.1 14.4 210 24-250 358-587 (593)
402 cd03239 ABC_SMC_head The struc 99.8 1.3E-19 2.7E-24 174.7 14.2 74 171-247 95-172 (178)
403 cd03283 ABC_MutS-like MutS-lik 99.8 3.8E-20 8.2E-25 181.5 9.7 148 52-245 13-163 (199)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.8 6.4E-20 1.4E-24 182.8 9.2 154 52-255 16-175 (222)
405 PRK00635 excinuclease ABC subu 99.8 9.6E-19 2.1E-23 212.4 20.3 197 55-261 1505-1796(1809)
406 cd03241 ABC_RecN RecN ATPase i 99.8 3E-19 6.5E-24 184.1 12.9 75 170-248 170-248 (276)
407 COG0178 UvrA Excinuclease ATPa 99.8 2.1E-18 4.5E-23 191.2 20.3 128 125-261 783-919 (935)
408 KOG0064 Peroxisomal long-chain 99.8 1.1E-19 2.3E-24 192.4 9.2 187 23-245 481-681 (728)
409 cd03227 ABC_Class2 ABC-type Cl 99.8 2.5E-19 5.4E-24 170.1 9.9 141 56-247 11-155 (162)
410 KOG0066 eIF2-interacting prote 99.8 1.3E-19 2.9E-24 187.6 1.9 202 51-257 275-495 (807)
411 PRK00349 uvrA excinuclease ABC 99.7 1.2E-17 2.6E-22 195.2 15.3 133 123-260 434-584 (943)
412 cd03243 ABC_MutS_homologs The 99.7 1.1E-17 2.3E-22 164.6 11.0 157 54-259 19-177 (202)
413 TIGR00630 uvra excinuclease AB 99.7 2.7E-17 5.8E-22 192.0 15.8 132 124-260 433-582 (924)
414 cd03242 ABC_RecF RecF is a rec 99.7 6.2E-17 1.3E-21 166.3 16.5 76 169-250 182-269 (270)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1.4E-17 3E-22 163.8 9.0 138 51-232 14-152 (204)
416 KOG0063 RNAse L inhibitor, ABC 99.7 3E-16 6.6E-21 163.0 13.2 178 52-246 348-531 (592)
417 TIGR02858 spore_III_AA stage I 99.7 3.7E-16 8.1E-21 159.6 10.6 140 67-259 112-267 (270)
418 cd03284 ABC_MutS1 MutS1 homolo 99.6 7.3E-16 1.6E-20 153.1 10.3 157 52-259 17-179 (216)
419 smart00534 MUTSac ATPase domai 99.6 1.1E-15 2.3E-20 148.4 3.2 79 169-250 60-139 (185)
420 PF02463 SMC_N: RecF/RecN/SMC 99.5 5.5E-15 1.2E-19 147.0 4.7 88 148-246 121-212 (220)
421 PRK00064 recF recombination pr 99.5 4.3E-13 9.4E-18 143.3 17.8 77 169-250 272-359 (361)
422 TIGR01247 drrB daunorubicin re 99.5 7.1E-12 1.5E-16 126.1 24.5 225 337-593 1-233 (236)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.5 1.3E-13 2.9E-18 136.6 11.5 132 54-233 17-156 (213)
424 cd00820 PEPCK_HprK Phosphoenol 99.5 7.2E-14 1.6E-18 122.2 6.8 74 53-135 2-78 (107)
425 cd03287 ABC_MSH3_euk MutS3 hom 99.4 5.9E-13 1.3E-17 132.5 12.6 135 52-232 17-155 (222)
426 TIGR01069 mutS2 MutS2 family p 99.4 1.6E-13 3.5E-18 158.8 9.7 130 59-233 314-447 (771)
427 KOG0063 RNAse L inhibitor, ABC 99.4 3.5E-13 7.5E-18 140.5 9.6 166 64-247 98-288 (592)
428 PTZ00132 GTP-binding nuclear p 99.4 1.8E-13 3.8E-18 135.7 7.1 49 170-218 150-205 (215)
429 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 8.3E-12 1.8E-16 123.1 18.4 149 419-599 58-206 (208)
430 PRK07721 fliI flagellum-specif 99.4 4.6E-12 1E-16 137.6 17.7 174 52-258 145-340 (438)
431 TIGR01291 nodJ ABC-2 type tran 99.4 1.2E-10 2.6E-15 118.6 26.8 235 331-599 7-250 (253)
432 TIGR00025 Mtu_efflux ABC trans 99.4 1E-10 2.2E-15 117.5 24.7 222 343-597 2-229 (232)
433 TIGR03861 phenyl_ABC_PedC alco 99.4 2.3E-10 4.9E-15 116.5 27.4 205 328-536 1-219 (253)
434 cd01128 rho_factor Transcripti 99.3 1.1E-12 2.5E-17 132.6 5.0 176 61-251 11-212 (249)
435 TIGR00634 recN DNA repair prot 99.3 6.7E-12 1.5E-16 141.9 9.2 77 169-249 439-519 (563)
436 cd03286 ABC_MSH6_euk MutS6 hom 99.3 7.2E-12 1.6E-16 124.4 7.8 136 52-233 16-155 (218)
437 PRK00409 recombination and DNA 99.3 5.7E-12 1.2E-16 146.4 8.2 152 55-252 317-469 (782)
438 PRK14079 recF recombination pr 99.3 8.3E-11 1.8E-15 125.2 16.1 73 170-251 263-344 (349)
439 PHA02562 46 endonuclease subun 99.3 9.8E-12 2.1E-16 140.8 8.8 78 168-250 466-555 (562)
440 PRK10869 recombination and rep 99.2 1.8E-11 3.8E-16 137.6 10.2 75 170-248 430-508 (553)
441 TIGR00618 sbcc exonuclease Sbc 99.2 2.3E-11 5E-16 146.9 11.0 79 168-248 948-1036(1042)
442 COG0178 UvrA Excinuclease ATPa 99.2 9.4E-11 2E-15 131.1 14.7 134 124-260 427-576 (935)
443 PRK08533 flagellar accessory p 99.2 7.4E-11 1.6E-15 118.4 12.5 150 62-246 20-184 (230)
444 PF13304 AAA_21: AAA domain; P 99.2 1.7E-11 3.7E-16 121.9 6.6 63 169-232 235-300 (303)
445 PRK15066 inner membrane transp 99.2 2.1E-08 4.6E-13 102.3 28.4 241 327-600 6-253 (257)
446 TIGR02788 VirB11 P-type DNA tr 99.2 8E-11 1.7E-15 123.4 10.5 142 59-260 137-280 (308)
447 cd01124 KaiC KaiC is a circadi 99.2 2.1E-10 4.6E-15 110.7 11.8 145 69-246 2-163 (187)
448 PRK13695 putative NTPase; Prov 99.2 2.1E-11 4.6E-16 117.0 4.7 78 169-253 77-156 (174)
449 PRK06793 fliI flagellum-specif 99.1 3.4E-10 7.4E-15 122.2 12.2 155 53-256 144-306 (432)
450 cd01120 RecA-like_NTPases RecA 99.1 1.9E-10 4.1E-15 107.5 8.7 129 68-233 1-139 (165)
451 PRK13830 conjugal transfer pro 99.1 1.9E-09 4E-14 126.7 16.0 68 186-255 650-727 (818)
452 PRK03918 chromosome segregatio 99.0 4.2E-10 9E-15 134.2 9.3 77 168-247 786-868 (880)
453 PRK01156 chromosome segregatio 99.0 1.2E-09 2.6E-14 130.4 13.0 77 168-246 799-883 (895)
454 PRK10246 exonuclease subunit S 99.0 7.9E-10 1.7E-14 133.2 10.6 78 168-247 947-1032(1047)
455 COG3910 Predicted ATPase [Gene 99.0 9.5E-09 2.1E-13 97.3 13.9 77 169-249 128-205 (233)
456 TIGR03238 dnd_assoc_3 dnd syst 98.9 8.9E-10 1.9E-14 118.9 5.0 51 53-105 19-70 (504)
457 cd01131 PilT Pilus retraction 98.9 5.4E-09 1.2E-13 102.6 10.0 119 68-246 3-122 (198)
458 PRK06995 flhF flagellar biosyn 98.9 3.6E-09 7.8E-14 115.9 9.5 150 55-229 245-400 (484)
459 TIGR00606 rad50 rad50. This fa 98.9 1.8E-09 4E-14 133.1 8.1 71 168-239 1197-1277(1311)
460 cd01125 repA Hexameric Replica 98.9 8.4E-09 1.8E-13 104.1 11.0 137 66-232 1-160 (239)
461 COG0842 ABC-type multidrug tra 98.9 2.6E-07 5.7E-12 93.9 22.0 169 405-602 116-285 (286)
462 TIGR02168 SMC_prok_B chromosom 98.8 3.2E-09 6.9E-14 130.0 7.4 75 168-246 1087-1165(1179)
463 PRK06067 flagellar accessory p 98.8 2.6E-08 5.6E-13 100.2 12.7 161 55-246 13-186 (234)
464 smart00382 AAA ATPases associa 98.8 1.4E-07 3.1E-12 84.6 15.6 119 65-230 1-125 (148)
465 PRK02224 chromosome segregatio 98.8 1.3E-08 2.8E-13 121.5 9.2 78 168-247 779-868 (880)
466 TIGR02169 SMC_prok_A chromosom 98.8 1.2E-08 2.5E-13 125.1 8.2 76 168-247 1072-1151(1164)
467 cd01130 VirB11-like_ATPase Typ 98.7 2.8E-08 6E-13 96.5 8.5 84 55-138 14-99 (186)
468 TIGR01026 fliI_yscN ATPase Fli 98.7 1.8E-07 3.9E-12 102.0 14.8 176 52-259 150-346 (440)
469 TIGR01248 drrC daunorubicin re 98.7 4.6E-07 1E-11 85.1 13.8 129 404-535 16-146 (152)
470 PRK13891 conjugal transfer pro 98.6 5.2E-07 1.1E-11 106.8 15.7 69 181-251 680-751 (852)
471 PRK06002 fliI flagellum-specif 98.6 1.2E-07 2.5E-12 102.9 9.3 82 23-121 139-230 (450)
472 PRK07196 fliI flagellum-specif 98.6 5.1E-08 1.1E-12 105.6 6.4 174 52-253 142-333 (434)
473 TIGR02655 circ_KaiC circadian 98.6 1.2E-08 2.7E-13 113.4 1.6 167 54-246 8-190 (484)
474 TIGR03881 KaiC_arch_4 KaiC dom 98.6 1.2E-08 2.7E-13 102.0 0.9 47 55-102 8-57 (229)
475 TIGR00611 recf recF protein. A 98.6 9.6E-08 2.1E-12 102.3 7.2 59 170-232 275-342 (365)
476 cd02023 UMPK Uridine monophosp 98.6 5E-08 1.1E-12 95.5 4.5 113 68-203 1-113 (198)
477 PRK05399 DNA mismatch repair p 98.6 1.1E-07 2.5E-12 112.1 8.3 139 53-241 595-738 (854)
478 TIGR01420 pilT_fam pilus retra 98.5 3.7E-07 8E-12 97.2 11.0 123 63-245 119-242 (343)
479 COG0419 SbcC ATPase involved i 98.4 7.5E-07 1.6E-11 106.5 9.9 77 168-247 813-897 (908)
480 PRK09825 idnK D-gluconate kina 98.4 2.1E-07 4.6E-12 89.6 3.5 67 65-135 2-70 (176)
481 cd01122 GP4d_helicase GP4d_hel 98.3 3.4E-06 7.4E-11 86.6 11.6 161 52-231 16-191 (271)
482 PRK13898 type IV secretion sys 98.3 9E-06 2E-10 96.1 16.5 48 185-233 639-687 (800)
483 COG1682 TagG ABC-type polysacc 98.3 0.00039 8.4E-09 71.2 26.1 207 326-541 15-226 (263)
484 TIGR03518 ABC_perm_GldF glidin 98.3 0.00048 1E-08 69.7 26.1 218 332-598 2-239 (240)
485 PLN03210 Resistant to P. syrin 98.3 2E-06 4.3E-11 105.5 9.8 162 59-268 200-365 (1153)
486 TIGR02680 conserved hypothetic 98.3 1.1E-06 2.3E-11 108.6 7.5 60 168-231 1245-1316(1353)
487 cd01876 YihA_EngB The YihA (En 98.3 2E-06 4.2E-11 80.2 7.1 64 148-216 100-169 (170)
488 TIGR00416 sms DNA repair prote 98.2 2.3E-06 5E-11 94.2 8.3 147 55-249 82-247 (454)
489 TIGR02903 spore_lon_C ATP-depe 98.2 3.5E-06 7.7E-11 96.2 9.3 110 65-215 174-291 (615)
490 PRK01889 GTPase RsgA; Reviewed 98.2 1.6E-06 3.5E-11 92.7 6.1 77 56-133 185-261 (356)
491 PRK00454 engB GTP-binding prot 98.2 7.8E-07 1.7E-11 86.3 2.8 67 148-219 125-195 (196)
492 PF00488 MutS_V: MutS domain V 98.2 4.3E-05 9.4E-10 77.0 14.6 47 186-232 120-167 (235)
493 PF13555 AAA_29: P-loop contai 98.1 2.4E-06 5.2E-11 67.3 4.2 37 56-92 12-49 (62)
494 cd00009 AAA The AAA+ (ATPases 98.1 6.6E-06 1.4E-10 74.5 7.9 56 176-232 72-131 (151)
495 PRK06315 type III secretion sy 98.1 4.8E-06 1E-10 90.7 8.0 107 52-160 151-277 (442)
496 PRK13873 conjugal transfer ATP 98.1 2.5E-05 5.4E-10 92.5 14.4 46 186-232 633-679 (811)
497 PF12679 ABC2_membrane_2: ABC- 98.1 0.0011 2.3E-08 67.8 24.8 163 408-598 89-274 (277)
498 PRK10078 ribose 1,5-bisphospho 98.1 2.3E-06 5E-11 83.0 4.7 37 66-105 2-38 (186)
499 TIGR02524 dot_icm_DotB Dot/Icm 98.1 5.8E-06 1.2E-10 88.3 7.7 75 64-138 132-211 (358)
500 PRK08149 ATP synthase SpaL; Va 98.1 4.6E-06 9.9E-11 90.4 6.9 68 52-120 138-215 (428)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-108 Score=921.51 Aligned_cols=572 Identities=41% Similarity=0.666 Sum_probs=509.5
Q ss_pred CCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---Ccc
Q 007383 19 LKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP---TNG 95 (605)
Q Consensus 19 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~---~~G 95 (605)
...+.++|+|+++..+.+. +..+++|+|||++++|||++|||||||||||||||+|+|+.+. .+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~------------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G 88 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEKS------------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSG 88 (613)
T ss_pred cccceeEEEEEEEEecCCC------------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceE
Confidence 3567899999999985321 1468899999999999999999999999999999999999975 799
Q ss_pred EEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCC--ChhHHHHHHHHHHHHcCCccccccccc----
Q 007383 96 TILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVP--KTSQIDTIITVLLTELRLAHLASTRLA---- 168 (605)
Q Consensus 96 ~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~--~~~~~~~~v~~~l~~l~L~~~~~~~~~---- 168 (605)
+|++||++.+.+.+++.+|||.|||.+++++||+|+|.|++.+ .+. ++++++++|+++++++||.+++|+.+.
T Consensus 89 ~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~ 168 (613)
T KOG0061|consen 89 EILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGI 168 (613)
T ss_pred EEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCC
Confidence 9999998888888999999999999999999999999999998 554 678899999999999999999999873
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
+++||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++ |+|||+++|||+.+++++||++++|++|
T Consensus 169 rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G 247 (613)
T KOG0061|consen 169 RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEG 247 (613)
T ss_pred CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCC
Confidence 579999999999999999999999999999999999999999999999987 9999999999999999999999999999
Q ss_pred eEEEecChhhHHHHHHhCCCCCCCCCChHHHHHHHhccc--ccCCCCCCCCCCC---C--CCCCCCC---CCCCCCccCc
Q 007383 249 SVVHHGTLASLETFLLSSGFSVPPQLNALEYTMEILSQL--HDDTKPLMNTPPS---G--DDDDGSA---TSPCDNEVNH 318 (605)
Q Consensus 249 ~iv~~g~~~~~~~~~~~~g~~~p~~~n~ad~~~~~~~~~--~~~~~~~~~~~~~---~--~~~~~~~---~~~~~~~~~~ 318 (605)
+++|+|+++++.+||.+.|++||++.||+||++|+++.. .+...+..+.... . .+..... ......+...
T Consensus 248 ~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (613)
T KOG0061|consen 248 EVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKK 327 (613)
T ss_pred cEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccc
Confidence 999999999999999999999999999999999999853 1111100000000 0 0000000 0000000011
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHh-h
Q 007383 319 TATIYRSSRLQEVCTLYNRFWKIIYRTRQLLLTNTLEALIVGLVLGTIFINVGYDKQGIENRFGLFAFTLTFLLSSTT-E 397 (605)
Q Consensus 319 ~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~-~ 397 (605)
......++||.|++.|++|.+++.+|||.+...|.++.+++|+++|++||++++++.++++|.|++||.+.+..+.++ .
T Consensus 328 ~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~ 407 (613)
T KOG0061|consen 328 VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFG 407 (613)
T ss_pred cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111127899999999999999999999999999999999999999999999999999999999999999998876655 4
Q ss_pred hHHHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHH
Q 007383 398 TLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFV 477 (605)
Q Consensus 398 ~i~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~ 477 (605)
+++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..++++++|
T Consensus 408 ~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~ 487 (613)
T KOG0061|consen 408 AVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLG 487 (613)
T ss_pred HHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccCCCccc
Q 007383 478 LFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQENTTCM 557 (605)
Q Consensus 478 ~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~~~~c~ 557 (605)
++++++.|+...|+++++++++++++|+||+++.++||.||+|++|+|+++|++||+++|||++....|..... ..|.
T Consensus 488 ~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~--~~~~ 565 (613)
T KOG0061|consen 488 LFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN--LCCE 565 (613)
T ss_pred HHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC--Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999985556765421 4678
Q ss_pred cchhhHhhhcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 007383 558 VTGGDVLQNRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIRRVSKSKK 605 (605)
Q Consensus 558 ~~g~~~L~~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~~~~~~~~ 605 (605)
.+|+++++..+++..+.|.|+.++++++++|++++|++|+++.+++++
T Consensus 566 ~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 566 STGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred ccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 999999999999999999999999999999999999999999998874
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=8.6e-105 Score=903.03 Aligned_cols=572 Identities=29% Similarity=0.531 Sum_probs=498.8
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT---NGTIL 98 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~---~G~I~ 98 (605)
..+++.++. +++.. ..+++++++.+|+|+|+++++||++||+|||||||||||++|+|+.++. +|+|.
T Consensus 16 ~~~~~~~~~-~~~~~--------~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~ 86 (617)
T TIGR00955 16 QDGSWKQLV-SRLRG--------CFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVL 86 (617)
T ss_pred ccchhhhhh-hhccc--------ccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence 456666666 44321 1123345678999999999999999999999999999999999999874 89999
Q ss_pred ECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCC--ChhHHHHHHHHHHHHcCCccccccccc-----CC
Q 007383 99 LNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVP--KTSQIDTIITVLLTELRLAHLASTRLA-----HN 170 (605)
Q Consensus 99 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~--~~~~~~~~v~~~l~~l~L~~~~~~~~~-----~~ 170 (605)
+||++++...+++.+|||+|+|.+++.+||+|||.|++.+ .+. ++++++++++++++.+||.++.|+.+. ++
T Consensus 87 ~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~ 166 (617)
T TIGR00955 87 LNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKG 166 (617)
T ss_pred ECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCC
Confidence 9999987667788899999999999999999999999877 332 445677789999999999999998863 36
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|||+++|||+.+++++||++++|++|++
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~ 245 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRV 245 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeE
Confidence 9999999999999999999999999999999999999999999999864 899999999998789999999999999999
Q ss_pred EEecChhhHHHHHHhCCCCCCCCCChHHHHHHHhcccccCCCCCCC----------CCCCCCCCCC-----CCCCC--CC
Q 007383 251 VHHGTLASLETFLLSSGFSVPPQLNALEYTMEILSQLHDDTKPLMN----------TPPSGDDDDG-----SATSP--CD 313 (605)
Q Consensus 251 v~~g~~~~~~~~~~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-----~~~~~--~~ 313 (605)
+|+|+++++.+||.+.|++||++.||+||++++++..........+ ......+... ...+. ..
T Consensus 246 v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 325 (617)
T TIGR00955 246 AYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVK 325 (617)
T ss_pred EEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccc
Confidence 9999999999999999999999999999999998754322111000 0000000000 00000 00
Q ss_pred CccCccccccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHH
Q 007383 314 NEVNHTATIYRSSRLQEVCTLYNRFWKIIYRTRQLLLTNTLEALIVGLVLGTIFINVGYDKQGIENRFGLFAFTLTFLLS 393 (605)
Q Consensus 314 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~ 393 (605)
.........+..+++.|++.|++|++++.+|||.++..|+++.+++|+++|++||+++++++++++|.|++|++++++.+
T Consensus 326 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f 405 (617)
T TIGR00955 326 DSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTF 405 (617)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00111223567899999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HH-hhhHHHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHH
Q 007383 394 ST-TETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILM 472 (605)
Q Consensus 394 ~~-~~~i~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~ 472 (605)
.+ +..++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++
T Consensus 406 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~ 485 (617)
T TIGR00955 406 QNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANV 485 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHH
Confidence 75 46788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcc-ccccccc
Q 007383 473 ANSFVLFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLAS-KCLLWYQ 551 (605)
Q Consensus 473 ~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~-~C~~~~~ 551 (605)
++++|+++++++|+...|+.+++++++++++|+||+++.++||+||+|++|+||++|++||++.|||++..+ +|.+..
T Consensus 486 ~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~- 564 (617)
T TIGR00955 486 ATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSAN- 564 (617)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcC-
Confidence 999999999999999999999999999999999999999999999999999999999999999999998774 686532
Q ss_pred CCCccccchhhHhhhcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 007383 552 ENTTCMVTGGDVLQNRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIRRVSKSK 604 (605)
Q Consensus 552 ~~~~c~~~g~~~L~~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~~~~~~~ 604 (605)
..+.|+.+|+++|+.+|++.++.|.|++++++++++|++++|++|+++.+++|
T Consensus 565 ~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 565 TTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 23569889999999999999999999999999999999999999999887765
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.6e-103 Score=893.47 Aligned_cols=569 Identities=27% Similarity=0.420 Sum_probs=474.7
Q ss_pred CcceEEEEeEEEEEecCCCC-----ccccccc-------cCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007383 20 KTYKLTGSSISYIKSNNSII-----PSFIFEA-------CSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILS 87 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~-----~~~~~~~-------~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~ 87 (605)
..+.+++.|++|+++..+.. ...+... .++.+++.+|+|+|+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 46789999999998654311 0011100 11234578999999999999999999999999999999999
Q ss_pred CCCCCC--ccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-CC--ChhHHHHHHHHHHHHcCCccc
Q 007383 88 ARTSPT--NGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VP--KTSQIDTIITVLLTELRLAHL 162 (605)
Q Consensus 88 g~~~~~--~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~--~~~~~~~~v~~~l~~l~L~~~ 162 (605)
|+.+|. +|+|.+||+++.. ..++.+|||+|++.+++.+||+||+.+++.+. +. ++++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 999884 8999999998753 34567999999999999999999999987653 32 344566789999999999988
Q ss_pred ccccc----cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc
Q 007383 163 ASTRL----AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST 238 (605)
Q Consensus 163 ~~~~~----~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 238 (605)
.|+.+ .++||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ +|+|||+++||++.++.++
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~ 273 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQM 273 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHh
Confidence 76543 478999999999999999999999999999999999999999999999986 4899999999998668999
Q ss_pred CCeEEEEeCCeEEEecChhhHHHHHHhCCCCCCCCCChHHHHHHHhcccccCCC--CCCCCC--C----CCC--------
Q 007383 239 IDRILLLSKGSVVHHGTLASLETFLLSSGFSVPPQLNALEYTMEILSQLHDDTK--PLMNTP--P----SGD-------- 302 (605)
Q Consensus 239 ~d~v~~l~~G~iv~~g~~~~~~~~~~~~g~~~p~~~n~ad~~~~~~~~~~~~~~--~~~~~~--~----~~~-------- 302 (605)
||++++|++|++++.|+++++.+||.+.|++||.+.|||||++|+++....... ...... . .++
T Consensus 274 ~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 353 (659)
T PLN03211 274 FDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVK 353 (659)
T ss_pred hceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHH
Confidence 999999999999999999999999999999999999999999999875422110 000000 0 000
Q ss_pred -CCCCC---CCCCC-----CCccC-ccccccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 007383 303 -DDDGS---ATSPC-----DNEVN-HTATIYRSSRLQEVCTLYNRFWKIIYRTRQLLLTNTLEALIVGLVLGTIFINVGY 372 (605)
Q Consensus 303 -~~~~~---~~~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~ 372 (605)
..... ..... ..+.. .....+.++||+|+++|++|++++ +||+.+...|+++++++|+++|++||+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~- 431 (659)
T PLN03211 354 AAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD- 431 (659)
T ss_pred HHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 00000 00000 00000 011224578999999999999998 89999999999999999999999999985
Q ss_pred ChhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 007383 373 DKQGIENRFGLFAFTLTFLLS-STTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVG 451 (605)
Q Consensus 373 ~~~~~~~~~g~lf~~~~~~~~-~~~~~i~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~g 451 (605)
+.++++|.|++||++.+.++ .++..++.|+.||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|
T Consensus 432 -~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~G 510 (659)
T PLN03211 432 -FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAG 510 (659)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCC
Confidence 68899999999999888665 4567899999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHH
Q 007383 452 LCASWQAFAYFVLVIWVIILMANSFVLFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYAL 531 (605)
Q Consensus 452 l~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~ 531 (605)
|++++.+|++|+++++++.++++++|+++++++|+...|+.+++++++++++||||+++ +||+||+|++|+||++|+|
T Consensus 511 l~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~ 588 (659)
T PLN03211 511 LKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSY 588 (659)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 7999999999999999999
Q ss_pred HHHHHHHhCCCc-----cccccccc-CCCccccchhhHhhhcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007383 532 DALLINEYSCLA-----SKCLLWYQ-ENTTCMVTGGDVLQNRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIRRV 600 (605)
Q Consensus 532 ~al~~nef~~~~-----~~C~~~~~-~~~~c~~~g~~~L~~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~~~ 600 (605)
||++.|||++.+ .+|.++.. ....|...+++++ ...+.|.|+++|++++++|++++|++|++.+
T Consensus 589 eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 589 RLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVA-----GQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred HHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998753 36865321 1234654444444 3456899999999999999999999998654
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.8e-100 Score=928.01 Aligned_cols=581 Identities=21% Similarity=0.333 Sum_probs=497.1
Q ss_pred CcceEEEEeEEEEEecCCCC-ccc-----------ccc---ccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHH
Q 007383 20 KTYKLTGSSISYIKSNNSII-PSF-----------IFE---ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLD 84 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~-~~~-----------~~~---~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~ 84 (605)
+.+.+.|+||++........ ... ... ..+++.+++||+|+|+++++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 46789999999988433221 111 000 123345678999999999999999999999999999999
Q ss_pred HHhCCC----CCCccEEEECCeeCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-CC------ChhHHHHH-H
Q 007383 85 ILSART----SPTNGTILLNSSPIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VP------KTSQIDTI-I 150 (605)
Q Consensus 85 ~l~g~~----~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~------~~~~~~~~-v 150 (605)
+|+|+. +|++|+|.+||++++. ..+++.++||+|+|.+++.+||+||+.|++++. +. ++++.+++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999996 4689999999998742 345667999999999999999999999998763 21 22333333 5
Q ss_pred HHHHHHcCCcccccccc----cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 007383 151 TVLLTELRLAHLASTRL----AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVIL 226 (605)
Q Consensus 151 ~~~l~~l~L~~~~~~~~----~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~ 226 (605)
+++++.+||.++.|+++ +++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 67899999999888764 47899999999999999999999999999999999999999999999998766899999
Q ss_pred EeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHHHHHhCCCCCCCCCChHHHHHHHhcccccCCCCC-----CCCCCCC
Q 007383 227 SIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETFLLSSGFSVPPQLNALEYTMEILSQLHDDTKPL-----MNTPPSG 301 (605)
Q Consensus 227 ~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~~~~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~-----~~~~~~~ 301 (605)
++|||+.+++++||++++|++|+++++|+++++.+||+++||+||++.|||||+++++++.++..... ++...+.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~ 345 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEF 345 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHH
Confidence 99999778999999999999999999999999999999999999999999999999987643221111 0000000
Q ss_pred -CCCCCC--------------CC---CC-----------CCCccCccccccCCCHHHHHHHHHHHHHHHHhcChhHHHHH
Q 007383 302 -DDDDGS--------------AT---SP-----------CDNEVNHTATIYRSSRLQEVCTLYNRFWKIIYRTRQLLLTN 352 (605)
Q Consensus 302 -~~~~~~--------------~~---~~-----------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r 352 (605)
+.|..+ .. .. ...+.......+..|+|+|+++|++|+++++||||.++..|
T Consensus 346 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r 425 (1394)
T TIGR00956 346 ETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFM 425 (1394)
T ss_pred HHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 000000 00 00 00000112235778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHH
Q 007383 353 TLEALIVGLVLGTIFINVGYDKQGIENRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFL 432 (605)
Q Consensus 353 ~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~l 432 (605)
+++.+++|+++|++||+++++++++++|.|++||++.+.+++++..++.++.||+||+||+.+|+|++++|++|++++|+
T Consensus 426 ~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~i 505 (1394)
T TIGR00956 426 VFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEI 505 (1394)
T ss_pred HHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCC
Q 007383 433 PYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKD 512 (605)
Q Consensus 433 P~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~ 512 (605)
|+.++.+++|++|+|||+||++++++||+|++++++..++++++++++++++|+...|+.+++++++++++|+||+++.+
T Consensus 506 P~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~ 585 (1394)
T TIGR00956 506 PFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRP 585 (1394)
T ss_pred HHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcccHHHHHHHHHHHHHhCCCcccccc--ccc--------CCCcc----------ccchhhHhh-hcCCCc
Q 007383 513 SMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLL--WYQ--------ENTTC----------MVTGGDVLQ-NRGLHE 571 (605)
Q Consensus 513 ~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~--~~~--------~~~~c----------~~~g~~~L~-~~g~~~ 571 (605)
+||+||+|++|+||++|||||++.|||++..++|.. +.+ ....| .++|+++|+ .+|++.
T Consensus 586 ~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~ 665 (1394)
T TIGR00956 586 SMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYN 665 (1394)
T ss_pred hccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCccc
Confidence 999999999999999999999999999999889962 110 11235 468999998 589999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007383 572 RQRWTNIYFLIGFFVLYRLLCFVVLIRRV 600 (605)
Q Consensus 572 ~~~~~~~~il~~~~i~~~~~~~~~L~~~~ 600 (605)
+++|+|++|+++|+++|++++++++.+..
T Consensus 666 ~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 666 SHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998876
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.1e-100 Score=922.91 Aligned_cols=567 Identities=25% Similarity=0.409 Sum_probs=488.1
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC---CCccE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS---PTNGT 96 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~---~~~G~ 96 (605)
+..+++++||+|+++. +++.+.+|+|||+++++||++||+||||||||||||+|+|+.+ +++|+
T Consensus 756 ~~~~l~~~nl~~~~~~-------------~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~ 822 (1394)
T TIGR00956 756 GEDIFHWRNLTYEVKI-------------KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD 822 (1394)
T ss_pred CCceEEEEeeEEEecC-------------CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE
Confidence 3457999999999842 1235689999999999999999999999999999999999997 68899
Q ss_pred EEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-CC--ChhHHHHHHHHHHHHcCCcccccccccC----
Q 007383 97 ILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VP--KTSQIDTIITVLLTELRLAHLASTRLAH---- 169 (605)
Q Consensus 97 I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~--~~~~~~~~v~~~l~~l~L~~~~~~~~~~---- 169 (605)
|.+||++++ ..+++.+|||+|+|.+++.+||+|||.|++.+. +. ++++++++++++++.+||.+++|+.+ +
T Consensus 823 I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v-~~~~~ 900 (1394)
T TIGR00956 823 RLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVV-GVPGE 900 (1394)
T ss_pred EEECCEECC-hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCee-CCCCC
Confidence 999999985 357788999999999999999999999998763 22 34566778999999999999998886 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 170 NLSGGERRRVSIGLSLLHDPA-VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~-illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
+|||||||||+||+||+.+|+ +|||||||+|||+.++..+++.|+++++ +|+|||+++|||+..+++.||++++|++|
T Consensus 901 ~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKG 979 (1394)
T ss_pred CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence 799999999999999999997 9999999999999999999999999986 48999999999997677899999999987
Q ss_pred -eEEEecCh----hhHHHHHHhCCC-CCCCCCChHHHHHHHhcccccCCCCC-----CCCCCCCCC-------CCCCCCC
Q 007383 249 -SVVHHGTL----ASLETFLLSSGF-SVPPQLNALEYTMEILSQLHDDTKPL-----MNTPPSGDD-------DDGSATS 310 (605)
Q Consensus 249 -~iv~~g~~----~~~~~~~~~~g~-~~p~~~n~ad~~~~~~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~ 310 (605)
+++++|++ +++.+||++.|+ +||++.|||||++|+++......... .+.....+. .......
T Consensus 980 G~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1059 (1394)
T TIGR00956 980 GQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSK 1059 (1394)
T ss_pred CEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhccccc
Confidence 99999997 467899999996 99999999999999987532211100 000000000 0000000
Q ss_pred CCCCccCccccccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHH
Q 007383 311 PCDNEVNHTATIYRSSRLQEVCTLYNRFWKIIYRTRQLLLTNTLEALIVGLVLGTIFINVGYDKQGIENRFGLFAFTLTF 390 (605)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~lf~~~~~ 390 (605)
............+++++|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++++.+++||+|++|+.+.+
T Consensus 1060 ~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~ 1139 (1394)
T TIGR00956 1060 AEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVL 1139 (1394)
T ss_pred CccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 00000111123578999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHhhhHHHHHhhhhHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHH-------HHHH
Q 007383 391 LLSSTTETLPIFINERPIL-LRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQA-------FAYF 462 (605)
Q Consensus 391 ~~~~~~~~i~~~~~er~v~-~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~-------f~~f 462 (605)
..+.....+|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++.. |++|
T Consensus 1140 ~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~ 1219 (1394)
T TIGR00956 1140 FNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLF 1219 (1394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHH
Confidence 7666667789999999886 9999999999999999999999999999999999999999999988766 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCC
Q 007383 463 VLVIWVIILMANSFVLFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCL 542 (605)
Q Consensus 463 ~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~ 542 (605)
+++++++.++++++|+++++++|+..+|+.+++++++++++|+||+++.++||.||+|++|+||++|+++|++.|||++.
T Consensus 1220 ~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~ 1299 (1394)
T TIGR00956 1220 WLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV 1299 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccc------------------------------ccCCC---ccc-cchhhHhhhcCCCcCChhHHHHHHHHHHHHH
Q 007383 543 ASKCLLW------------------------------YQENT---TCM-VTGGDVLQNRGLHERQRWTNIYFLIGFFVLY 588 (605)
Q Consensus 543 ~~~C~~~------------------------------~~~~~---~c~-~~g~~~L~~~g~~~~~~~~~~~il~~~~i~~ 588 (605)
..+|.+. ++... .|+ .+|+++|+.+|++.+++|+|++++++|++++
T Consensus 1300 ~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~ 1379 (1394)
T TIGR00956 1300 PVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN 1379 (1394)
T ss_pred eeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH
Confidence 7777542 01112 244 6999999999999999999999999999888
Q ss_pred HHHHHHHHHhhhccc
Q 007383 589 RLLCFVVLIRRVSKS 603 (605)
Q Consensus 589 ~~~~~~~L~~~~~~~ 603 (605)
+++++.|.++.+.+
T Consensus 1380 -~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1380 -IIATVFFYWLARVP 1393 (1394)
T ss_pred -HHHHHhhheEEEcC
Confidence 88888898875544
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.1e-99 Score=915.88 Aligned_cols=576 Identities=24% Similarity=0.408 Sum_probs=488.9
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CccEEE
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP--TNGTIL 98 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~--~~G~I~ 98 (605)
...++|+||+|.++.+.... ......+.+.+|+|||++++|||++||+||||||||||||+|+|+.++ .+|+|.
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~----~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~ 940 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMK----EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR 940 (1470)
T ss_pred cceEEEEEEEEEEccCcccc----ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEE
Confidence 34799999999996432100 000112346799999999999999999999999999999999999874 789999
Q ss_pred ECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCC--ChhHHHHHHHHHHHHcCCcccccccc----cCCC
Q 007383 99 LNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVP--KTSQIDTIITVLLTELRLAHLASTRL----AHNL 171 (605)
Q Consensus 99 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~--~~~~~~~~v~~~l~~l~L~~~~~~~~----~~~L 171 (605)
+||++.+...+++.+|||+|+|.+++.+||+|||.|++.+ .+. ++++++++++++++.+||.++.|+.+ +++|
T Consensus 941 inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~L 1020 (1470)
T PLN03140 941 ISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020 (1470)
T ss_pred ECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCc
Confidence 9999876555677899999999999999999999999866 332 34456678999999999999888875 2689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC-CeE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK-GSV 250 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~-G~i 250 (605)
||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |++
T Consensus 1021 SgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 999999999999999999999999999999999999999999999865 899999999999768899999999996 899
Q ss_pred EEecCh----hhHHHHHHhC-CC-CCCCCCChHHHHHHHhcccccCCCCC-----CCCCCCCCC----CCCCCCCCCCCc
Q 007383 251 VHHGTL----ASLETFLLSS-GF-SVPPQLNALEYTMEILSQLHDDTKPL-----MNTPPSGDD----DDGSATSPCDNE 315 (605)
Q Consensus 251 v~~g~~----~~~~~~~~~~-g~-~~p~~~n~ad~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~ 315 (605)
+|+|++ +++.+||++. |+ .||++.|||||++|+++......... .+....... .+.........+
T Consensus 1100 v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 1179 (1470)
T PLN03140 1100 IYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGAS 1179 (1470)
T ss_pred EEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCcc
Confidence 999996 5789999997 66 59999999999999986432111000 000000000 000000000011
Q ss_pred cCccccccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHHHHHHHH
Q 007383 316 VNHTATIYRSSRLQEVCTLYNRFWKIIYRTRQLLLTNTLEALIVGLVLGTIFINVGYDK---QGIENRFGLFAFTLTFLL 392 (605)
Q Consensus 316 ~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~ 392 (605)
.......+++++|+|++.|++|+++++||||.+..+|+++++++|+++|++||++++++ .+++++.|++|+++.+..
T Consensus 1180 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 1259 (1470)
T PLN03140 1180 DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVG 1259 (1470)
T ss_pred ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 11113457899999999999999999999999999999999999999999999999864 578889999999888877
Q ss_pred HHHh-hhHHHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHH
Q 007383 393 SSTT-ETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIIL 471 (605)
Q Consensus 393 ~~~~-~~i~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~ 471 (605)
+... +.+|.|..||+||+||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..+
T Consensus 1260 ~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~ 1339 (1470)
T PLN03140 1260 INNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFL 1339 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Confidence 7554 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCccccccccc
Q 007383 472 MANSFVLFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQ 551 (605)
Q Consensus 472 ~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~ 551 (605)
+++++|+++++++|+..+|..+++++++++++|+||++|.++||+||+|++|+||++|+++|++.|||++...+|..+..
T Consensus 1340 ~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~ 1419 (1470)
T PLN03140 1340 YFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGG 1419 (1470)
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998766643211
Q ss_pred CCCccccchhhH-hhhcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 007383 552 ENTTCMVTGGDV-LQNRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIRRVSKSK 604 (605)
Q Consensus 552 ~~~~c~~~g~~~-L~~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~~~~~~~ 604 (605)
....+++++ ++.+|++.++.|++++++++|+++|++++++++++.++++|
T Consensus 1420 ---~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1420 ---APDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred ---CCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 111356777 57799999999999999999999999999999999998886
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.1e-99 Score=912.60 Aligned_cols=579 Identities=22% Similarity=0.343 Sum_probs=487.3
Q ss_pred CCcceEEEEeEEEEEecCCCC--ccc-----------cc---cc-cCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHH
Q 007383 19 LKTYKLTGSSISYIKSNNSII--PSF-----------IF---EA-CSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKST 81 (605)
Q Consensus 19 ~~~~~l~~~~ls~~~~~~~~~--~~~-----------~~---~~-~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTT 81 (605)
.+.+.+.|+||++........ ... .. +. .+++.++.||+|+|+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 456789999999987622111 111 00 10 12334678999999999999999999999999999
Q ss_pred HHHHHhCCCCCC---ccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC----------ChhHH--
Q 007383 82 LLDILSARTSPT---NGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP----------KTSQI-- 146 (605)
Q Consensus 82 LL~~l~g~~~~~---~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~----------~~~~~-- 146 (605)
|||+|+|+++|+ +|+|.+||++++....++.++||+|+|.+++.+||+|||.|++++.+. +++++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999999987 999999999875444467899999999999999999999999876321 11111
Q ss_pred ----------------------HHHHHHHHHHcCCcccccccc----cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 007383 147 ----------------------DTIITVLLTELRLAHLASTRL----AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSG 200 (605)
Q Consensus 147 ----------------------~~~v~~~l~~l~L~~~~~~~~----~~~LSgGerqRv~ia~aL~~~P~illLDEPtsg 200 (605)
+..++++++.+||+++.|+.+ +++|||||||||+||++|+.+|+++||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 123577999999999886543 489999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHHHHHhCCCCCCCCCChHHHH
Q 007383 201 LDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETFLLSSGFSVPPQLNALEYT 280 (605)
Q Consensus 201 LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~~~~~~g~~~p~~~n~ad~~ 280 (605)
||+.++.++++.|++++++.|+|||+++|||+.+++++||+|++|++|+++|+|+.+++.+||+++||.||++.|||||+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl 446 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999998766899999999998789999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCCCCCC-------CC-CCCCCC----------CCCC---CCCccCccccccCCCHHHHHHHHHHHHH
Q 007383 281 MEILSQLHDDTKPLMNTPP-------SG-DDDDGS----------ATSP---CDNEVNHTATIYRSSRLQEVCTLYNRFW 339 (605)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~----------~~~~---~~~~~~~~~~~~~~~~~~q~~~l~~R~~ 339 (605)
++++++.+.+........+ +. +.+... .... ...+.......+..+++.|++.+++|++
T Consensus 447 ~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~ 526 (1470)
T PLN03140 447 QEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEW 526 (1470)
T ss_pred HHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHH
Confidence 9998764331110000000 00 000000 0000 0001111234578899999999999999
Q ss_pred HHHhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHHHHHhcCC
Q 007383 340 KIIYRTRQLLLTNTLEALIVGLVLGTIFINVGYDK---QGIENRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSG 416 (605)
Q Consensus 340 ~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g 416 (605)
++++||+..+..|+++.+++|+++|++||+++.++ .+.+.+.|++||++.+.++++++.++.++.||+||+|||+++
T Consensus 527 ~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~ 606 (1470)
T PLN03140 527 LLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLL 606 (1470)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhcc
Confidence 99999999999999999999999999999997542 345667888999999888888889999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007383 417 VYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLSSLAPNYIAGTSLVTI 496 (605)
Q Consensus 417 ~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~ 496 (605)
+|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++++..+|+.++++
T Consensus 607 ~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~ 686 (1470)
T PLN03140 607 FHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGAL 686 (1470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccCCCccccchhhHhhhcCCCcCC--h
Q 007383 497 FLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQENTTCMVTGGDVLQNRGLHERQ--R 574 (605)
Q Consensus 497 ~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~~~~c~~~g~~~L~~~g~~~~~--~ 574 (605)
+++++++|+||+++.++||+||+|++|+||++||+||+++|||.+..+.|... .+.+..+|+++|+.+|+..++ +
T Consensus 687 ~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~---~~~~~~~G~~~L~~~g~~~~~~~~ 763 (1470)
T PLN03140 687 VLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMA---SDNSTRLGTAVLNIFDVFTDKNWY 763 (1470)
T ss_pred HHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCccc---CCCCcccHHHHHHhcCcCccccch
Confidence 99999999999999999999999999999999999999999998765321110 012457899999999998654 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007383 575 WTNIYFLIGFFVLYRLLCFVVLIRRV 600 (605)
Q Consensus 575 ~~~~~il~~~~i~~~~~~~~~L~~~~ 600 (605)
|+|+++|++|+++|+++++++|++..
T Consensus 764 w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 764 WIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999876
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.5e-95 Score=829.63 Aligned_cols=551 Identities=26% Similarity=0.433 Sum_probs=461.9
Q ss_pred CCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCeeCCcccccCceEEEcCCCCCCCCCC
Q 007383 50 KPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP--TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLT 127 (605)
Q Consensus 50 ~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~--~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (605)
.+++++|+|||+.++||.++||||+||||||||||+||||... .+|+|++||.|.+.+.++|.+|||.|+|.|.+.+|
T Consensus 801 G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 801 GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 3678899999999999999999999999999999999999765 79999999999877889999999999999999999
Q ss_pred HHHHHHHHHhc-CCC--ChhHHHHHHHHHHHHcCCcccccccc---cCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCC
Q 007383 128 VYETFLFSARL-LVP--KTSQIDTIITVLLTELRLAHLASTRL---AHNLSGGERRRVSIGLSLLHDP-AVLLLDEPTSG 200 (605)
Q Consensus 128 v~e~l~~~~~~-~~~--~~~~~~~~v~~~l~~l~L~~~~~~~~---~~~LSgGerqRv~ia~aL~~~P-~illLDEPtsg 200 (605)
|+|.|.|+|.+ ++. +.+++.+.|+++++.++|++++|..+ ..|||.+||||++||.+|+.|| .||||||||||
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 99999999998 443 56677789999999999999998876 4579999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC-CeEEEecChhh----HHHHHHhCC-CCCCCCC
Q 007383 201 LDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK-GSVVHHGTLAS----LETFLLSSG-FSVPPQL 274 (605)
Q Consensus 201 LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~-G~iv~~g~~~~----~~~~~~~~g-~~~p~~~ 274 (605)
||+.++..|++.+|++++ .|+||+||+|||+.++++.||++++|++ |++||.|+..+ +.+||++.| .+||...
T Consensus 961 LDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~ 1039 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDE 1039 (1391)
T ss_pred ccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCC
Confidence 999999999999999997 5999999999999999999999999985 89999999865 567999977 7999999
Q ss_pred ChHHHHHHHhcccccCCCCC-----CCCCCCCCCC----CCCCCCCCC-CccCccccccCCCHHHHHHHHHHHHHHHHhc
Q 007383 275 NALEYTMEILSQLHDDTKPL-----MNTPPSGDDD----DGSATSPCD-NEVNHTATIYRSSRLQEVCTLYNRFWKIIYR 344 (605)
Q Consensus 275 n~ad~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R 344 (605)
|||||++|++.......... .+...+++.. +...++.+. ........++++|+|.|++.+++|++..+||
T Consensus 1040 NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWR 1119 (1391)
T KOG0065|consen 1040 NPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWR 1119 (1391)
T ss_pred ChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhC
Confidence 99999999987543321110 1111111100 000111111 2222334568999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhhhHHHHHhcCCCCChHHH
Q 007383 345 TRQLLLTNTLEALIVGLVLGTIFINVGYDKQGIENRFGLFAFTLTFLLSSTTETLP-IFINERPILLRETSSGVYRLSSY 423 (605)
Q Consensus 345 d~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~i~-~~~~er~v~~rE~~~g~Y~~~~y 423 (605)
+|.++.+|++..++.|+++|+.||++|++..++||.+|++|..+.+......+..+ .+..||.+++||+++|+|++.+|
T Consensus 1120 sp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~ 1199 (1391)
T KOG0065|consen 1120 SPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPF 1199 (1391)
T ss_pred CcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHH
Confidence 99999999999999999999999999999999999999999888877665555444 45569999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 007383 424 LIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLSSLAPNYIAGTSLVTIFLGAFFL 503 (605)
Q Consensus 424 ~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l 503 (605)
++|.+++|+|+.++.+.+|.+++|+++|+..++.+|++|++.+++..++.+.+|+++.+++||.+.|..+.+.+...+.+
T Consensus 1200 ~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~ 1279 (1391)
T KOG0065|consen 1200 ALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNL 1279 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccC--CCccccchhhHh-hhcC----CCcCChhH
Q 007383 504 FSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQE--NTTCMVTGGDVL-QNRG----LHERQRWT 576 (605)
Q Consensus 504 fsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~--~~~c~~~g~~~L-~~~g----~~~~~~~~ 576 (605)
|||+++|+..||.||+|+||+||+.|.+++++..++++....|...... +.+|..+-.+++ ..+| +..+..-.
T Consensus 1280 F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~ 1359 (1391)
T KOG0065|consen 1280 FSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLAT 1359 (1391)
T ss_pred hcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcce
Confidence 9999999999999999999999999999999999999988778643210 111222222233 2344 33332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 007383 577 NIYFLIGFFVLYRLLCFVVLIRRVS 601 (605)
Q Consensus 577 ~~~il~~~~i~~~~~~~~~L~~~~~ 601 (605)
...+.+++.+++.+++-+.+++..+
T Consensus 1360 ~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1360 TACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred eEEEEeeeehHHHHHHHHHHHHHHH
Confidence 2234445555555555555555443
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-88 Score=776.94 Aligned_cols=550 Identities=25% Similarity=0.410 Sum_probs=483.0
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCeeCCcccccCceEEEcCCCCCCCCCC
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP---TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLT 127 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~---~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (605)
...+||+|+|+.++||+++.++||.||||||||++|+|.++. ..|+|.+||.+.+...-++.++|.+|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 446799999999999999999999999999999999999875 46899999998764434788999999999999999
Q ss_pred HHHHHHHHHhcC-CC------ChhHHH-HHHHHHHHHcCCcccccccc----cCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 007383 128 VYETFLFSARLL-VP------KTSQID-TIITVLLTELRLAHLASTRL----AHNLSGGERRRVSIGLSLLHDPAVLLLD 195 (605)
Q Consensus 128 v~e~l~~~~~~~-~~------~~~~~~-~~v~~~l~~l~L~~~~~~~~----~~~LSgGerqRv~ia~aL~~~P~illLD 195 (605)
|+|+|.|++++. +. ++.++. +..+.+++.+||++++|+.+ .+++||||||||++|.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 999999999993 31 122222 25778999999999999987 6899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHHHHHhCCCCCCCCCC
Q 007383 196 EPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETFLLSSGFSVPPQLN 275 (605)
Q Consensus 196 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~~~~~~g~~~p~~~n 275 (605)
|+|+|||+.++.++++.|+++++..+.|++++.|||+.+++++||+|++|++|+++|+|+.+++.+||++.||.||++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccccCCCCCCCCCCC-----------CCCCC-C----CCCCCC-----CCccCccccccCCCHHHHHHHH
Q 007383 276 ALEYTMEILSQLHDDTKPLMNTPPS-----------GDDDD-G----SATSPC-----DNEVNHTATIYRSSRLQEVCTL 334 (605)
Q Consensus 276 ~ad~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~----~~~~~~-----~~~~~~~~~~~~~~~~~q~~~l 334 (605)
+|||+.++++.....+....+.... ...+. + .+.+.+ ..+......++..+.|.|++.+
T Consensus 366 ~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c 445 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKAC 445 (1391)
T ss_pred HHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHH
Confidence 9999999998433222111110000 00000 0 000001 1111233557889999999999
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHHHHHh
Q 007383 335 YNRFWKIIYRTRQLLLTNTLEALIVGLVLGTIFINVG-YDKQGIENRFGLFAFTLTFLLSSTTETLPIFINERPILLRET 413 (605)
Q Consensus 335 ~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~i~~~~~er~v~~rE~ 413 (605)
+.|.|..+.||..++..++++.+++|+++|++|++.. ++..+.+.|.|++||++.+.++.+++.++..++.||||+|||
T Consensus 446 ~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr 525 (1391)
T KOG0065|consen 446 TIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHR 525 (1391)
T ss_pred HHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhh
Confidence 9999999999999999999999999999999999999 788899999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 007383 414 SSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLSSLAPNYIAGTSL 493 (605)
Q Consensus 414 ~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~ 493 (605)
...+|++++|.++.+++++|+.++.+++|.+|+||++||.+++++||.+++++++.+.|+.++.+++++++++...|+.+
T Consensus 526 ~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~ 605 (1391)
T KOG0065|consen 526 DLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLI 605 (1391)
T ss_pred cccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccC-------CCccc---------
Q 007383 494 VTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQE-------NTTCM--------- 557 (605)
Q Consensus 494 ~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~-------~~~c~--------- 557 (605)
+++.++.+.+++||.||.++||+||+|++|+||+.||+|+++.|||.+.+..|.+.+++ +..|.
T Consensus 606 g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~ 685 (1391)
T KOG0065|consen 606 GGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGND 685 (1391)
T ss_pred hHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCce
Confidence 99999999999999999999999999999999999999999999999999999832211 23452
Q ss_pred -cchhhHhh-hcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007383 558 -VTGGDVLQ-NRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIRRV 600 (605)
Q Consensus 558 -~~g~~~L~-~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~~~ 600 (605)
+.|.++++ .|+++..++|+|++|++||.++|.++..+++.+.+
T Consensus 686 ~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 686 YVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred EEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 24555553 36667889999999999999999999999988766
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-56 Score=425.96 Aligned_cols=232 Identities=28% Similarity=0.430 Sum_probs=211.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +...+|+|||+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+
T Consensus 2 mi~i~~l~K~f-----------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 2 MIEIKNLSKSF-----------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred eEEEEeeeEEe-----------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 68999999999 5788999999999999999999999999999999999999999999999998
Q ss_pred eCC----cccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 103 PIK----PSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
++. ....|+.+|+|+|+..|||.+||.||+.++... .+.++++.+++..++|+.+||.+.+|.. |.+|||||||
T Consensus 65 ~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y-P~qLSGGQqQ 143 (240)
T COG1126 65 DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY-PAQLSGGQQQ 143 (240)
T ss_pred eccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC-ccccCcHHHH
Confidence 763 245788999999999999999999999998766 6678889999999999999999999877 6999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
||+|||||+.+|+++++|||||+|||+...++++.+++++++ |.|.|++||++.. +.+.+|||++|++|+++..|+++
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999975 8999999999997 78999999999999999999988
Q ss_pred hHHHHHHhCCCCCCCCCChHHHHHH
Q 007383 258 SLETFLLSSGFSVPPQLNALEYTME 282 (605)
Q Consensus 258 ~~~~~~~~~g~~~p~~~n~ad~~~~ 282 (605)
++ |..|.+....+|+-.
T Consensus 222 ~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 222 EF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred HH--------hcCCCCHHHHHHHHh
Confidence 76 234554444555543
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-53 Score=423.91 Aligned_cols=223 Identities=29% Similarity=0.443 Sum_probs=207.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|++++||+.|..+ ..+...+|+|||++|++||++||+|.||||||||+|++.++..|++|+|.++|+
T Consensus 1 mI~l~~vsK~~~~~------------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~ 68 (339)
T COG1135 1 MIELENVSKTFGQT------------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ 68 (339)
T ss_pred CeEEEeeeeeeccC------------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCE
Confidence 58999999998521 223467999999999999999999999999999999999999999999999998
Q ss_pred eCCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.. ...|+.||++||+..++...||+||+.|...+.+.++++.++++.++++.+||.+..+.. |.+||||||
T Consensus 69 di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-P~qLSGGQK 147 (339)
T COG1135 69 DLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-PAQLSGGQK 147 (339)
T ss_pred ecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-chhcCcchh
Confidence 8742 457889999999999999999999999999987778889999999999999999888777 699999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
|||+|||||+.+|+|||+|||||+|||.+.+.|+++|+++.++.|.||+++||+++. +.++||||.+|++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeCCEEEEeccH
Confidence 999999999999999999999999999999999999999999999999999999985 8999999999999999999999
Q ss_pred hhH
Q 007383 257 ASL 259 (605)
Q Consensus 257 ~~~ 259 (605)
.++
T Consensus 227 ~~v 229 (339)
T COG1135 227 SEV 229 (339)
T ss_pred HHh
Confidence 886
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-53 Score=410.15 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=206.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++|||+.| +++.+++|+|++|++||+++++|||||||||+||+|.+++.|++|+|++||+
T Consensus 1 MI~~~nvsk~y-----------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~ 63 (309)
T COG1125 1 MIEFENVSKRY-----------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE 63 (309)
T ss_pred Cceeeeeehhc-----------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCe
Confidence 58999999998 4678999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc--cccccccCCCCHHHHH
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH--LASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~~~~~LSgGerq 177 (605)
++. ..++|+.||||-|+..|||.+||.||+.+...+.+.++++.+++++++++.+||++ ..++. |++|||||+|
T Consensus 64 ~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-P~eLSGGQQQ 142 (309)
T COG1125 64 DISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY-PHELSGGQQQ 142 (309)
T ss_pred ecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC-chhcCcchhh
Confidence 985 35689999999999999999999999999988877788889999999999999975 55555 7999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
||.+||||+.+|++|++|||+++|||.++.++-+.++++.++-|+|||++|||.+ |+.+++|||.+|++|+++..++|+
T Consensus 143 RVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~ 221 (309)
T COG1125 143 RVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPD 221 (309)
T ss_pred HHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 699999999999999999999999
Q ss_pred hHH
Q 007383 258 SLE 260 (605)
Q Consensus 258 ~~~ 260 (605)
++.
T Consensus 222 ~il 224 (309)
T COG1125 222 EIL 224 (309)
T ss_pred HHH
Confidence 884
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-51 Score=427.57 Aligned_cols=224 Identities=34% Similarity=0.522 Sum_probs=205.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCC-CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKP-PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.++++||++.| + .+.+|+||||++++||++||+||||||||||+|+|+|+.+|++|+|.++|
T Consensus 4 ~i~~~~l~k~~-----------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G 66 (293)
T COG1131 4 VIEVRNLTKKY-----------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG 66 (293)
T ss_pred eeeecceEEEe-----------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcC
Confidence 57899999999 4 57899999999999999999999999999999999999999999999999
Q ss_pred eeCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 102 SPIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 102 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
++... ...++++||++|++.+++.+||+|||.|.+.+++.+....+++++++++.+||.+..++++ ++||+|||||+
T Consensus 67 ~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~lS~G~kqrl 145 (293)
T COG1131 67 YDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV-RTLSGGMKQRL 145 (293)
T ss_pred EeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcch-hhcCHHHHHHH
Confidence 98754 4678899999999999999999999999999876544566789999999999998666664 99999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+||+||+++|+++||||||+||||.++.++.++|+++++++|+||+++||+++ ++.++||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999876689999999998 69999999999999999999999887
Q ss_pred HHHHHh
Q 007383 260 ETFLLS 265 (605)
Q Consensus 260 ~~~~~~ 265 (605)
...+..
T Consensus 225 ~~~~~~ 230 (293)
T COG1131 225 KEKFGG 230 (293)
T ss_pred HHhhcc
Confidence 666543
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.7e-52 Score=401.51 Aligned_cols=222 Identities=32% Similarity=0.435 Sum_probs=204.9
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...+++++|++++ +.+.|++|+|+++++||+++|+||||+|||||||+|.|+++|++|+|.++
T Consensus 6 ~~~I~vr~v~~~f-----------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~ 68 (263)
T COG1127 6 EPLIEVRGVTKSF-----------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68 (263)
T ss_pred cceEEEeeeeeec-----------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEc
Confidence 4679999999998 67899999999999999999999999999999999999999999999999
Q ss_pred CeeCCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCH
Q 007383 101 SSPIKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG 173 (605)
Q Consensus 101 g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSg 173 (605)
|+++.. ...++++|+++|+..||..+||+||+.|..+-+ ..+++..++.+..-|+.+||......+.|.+|||
T Consensus 69 G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSG 148 (263)
T COG1127 69 GEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSG 148 (263)
T ss_pred CcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcc
Confidence 998742 256788999999999999999999999987763 3477778888988999999988733444799999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
||+||+++|||++.||+++|+||||+||||.++..+-++++++.++-|.|++++|||.+ +++.++||+++|.+|+++..
T Consensus 149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998 59999999999999999999
Q ss_pred cChhhHH
Q 007383 254 GTLASLE 260 (605)
Q Consensus 254 g~~~~~~ 260 (605)
|+++++.
T Consensus 228 Gt~~el~ 234 (263)
T COG1127 228 GTPEELL 234 (263)
T ss_pred CCHHHHH
Confidence 9999974
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.2e-52 Score=413.49 Aligned_cols=218 Identities=34% Similarity=0.512 Sum_probs=200.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+
T Consensus 2 ~L~~~~ls~~y-----------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~ 64 (258)
T COG1120 2 MLEVENLSFGY-----------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64 (258)
T ss_pred eeEEEEEEEEE-----------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCC
Confidence 58999999999 4678999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL----VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++. .+++.+.+|||||.....+.+||+|.+.++..-+ ....++.++.+++.|+.+|+.+.+++.+ .+|||||
T Consensus 65 ~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-~~LSGGe 143 (258)
T COG1120 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-DELSGGE 143 (258)
T ss_pred chhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-cccChhH
Confidence 874 4567789999999998888999999999985432 2234455668999999999999999886 9999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
||||.|||||+++|++|+||||||.||...+.+++++++++++++|+|||+++||++. +.++||++++|++|+++.+|+
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecC
Confidence 9999999999999999999999999999999999999999998889999999999995 899999999999999999999
Q ss_pred hhhH
Q 007383 256 LASL 259 (605)
Q Consensus 256 ~~~~ 259 (605)
|+++
T Consensus 223 p~ev 226 (258)
T COG1120 223 PEEV 226 (258)
T ss_pred cchh
Confidence 9876
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.3e-51 Score=401.26 Aligned_cols=213 Identities=31% Similarity=0.500 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++||++.|.. +.....+|+++|++|++||+++|+|||||||||||++|+|+.+|++|+|.++|+
T Consensus 1 ~i~~~~v~k~y~~-------------~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~ 67 (226)
T COG1136 1 MIELKNVSKIYGL-------------GGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGK 67 (226)
T ss_pred CcEEeeeEEEecc-------------CCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE
Confidence 3679999998852 112368999999999999999999999999999999999999999999999998
Q ss_pred eCCc------ccc-cCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKP------SSF-RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~------~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
+++. ..+ ++.+|||+|+..|+|.+||.||+.+.+.+...+..+.+++++++++.+||.+..+++.|.+|||||
T Consensus 68 d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGq 147 (226)
T COG1136 68 DLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQ 147 (226)
T ss_pred EcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHH
Confidence 8752 123 457999999999999999999999987664443336778899999999999777644469999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||||+|||||+.+|++++.||||.+||+.+++.|+++|++++++.|+|||++|||+. +.+.|||++.|.+|++
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 999999999999999999999999999999999999999999888999999999985 7889999999999984
No 17
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-51 Score=400.57 Aligned_cols=206 Identities=31% Similarity=0.445 Sum_probs=191.5
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..+++++++++| +...+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|
T Consensus 2 ~~l~i~~v~~~f-----------------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g 64 (248)
T COG1116 2 ALLEIEGVSKSF-----------------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64 (248)
T ss_pred ceEEEEeeEEEe-----------------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 358999999999 347899999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+++ ......+|||+|++.++|.+||+||+.++....+.++++.+++++++++.+||.+..++. |++|||||||||+|
T Consensus 65 ~~v--~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~-P~qLSGGMrQRVai 141 (248)
T COG1116 65 RPV--TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKY-PHQLSGGMRQRVAI 141 (248)
T ss_pred ccc--CCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcC-ccccChHHHHHHHH
Confidence 987 334567999999999999999999999998875556667778999999999999999877 69999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
||||+.+|++|+||||+++||+.++..+.+.|.++.++.++||+++|||.+ |+..++|||++|+++
T Consensus 142 ARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 142 ARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999998 688999999999983
No 18
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-51 Score=395.15 Aligned_cols=229 Identities=31% Similarity=0.422 Sum_probs=205.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||++.|+ +++++|+|||++|++||++||+|||||||||||++|+|+.+|++|+|.+||
T Consensus 2 ~~i~~~nl~k~yp----------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g 65 (258)
T COG3638 2 MMIEVKNLSKTYP----------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG 65 (258)
T ss_pred ceEEEeeeeeecC----------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecc
Confidence 4699999999995 467899999999999999999999999999999999999999999999999
Q ss_pred eeCCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC--------CCChhHHHHHHHHHHHHcCCcccccccc
Q 007383 102 SPIKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL--------VPKTSQIDTIITVLLTELRLAHLASTRL 167 (605)
Q Consensus 102 ~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~--------~~~~~~~~~~v~~~l~~l~L~~~~~~~~ 167 (605)
.++.. +++|+++||++|++.+.+.+||.||+..+..-+ +...++.+..+-+.|+.+|+.+.+.++.
T Consensus 66 ~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 66 VQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh
Confidence 87642 357889999999999999999999999874322 2233455667788999999999888884
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
.+|||||+|||+|||||+++|+++|.|||+++|||.+++++++.|++++++.|.|||++.||.+. +.++|||++-|++
T Consensus 146 -~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~ 223 (258)
T COG3638 146 -STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA 223 (258)
T ss_pred -ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999985 8899999999999
Q ss_pred CeEEEecChhhHHHHHHhCCC
Q 007383 248 GSVVHHGTLASLETFLLSSGF 268 (605)
Q Consensus 248 G~iv~~g~~~~~~~~~~~~g~ 268 (605)
|+++|+|+++++.+.+.+.-|
T Consensus 224 G~ivfDg~~~el~~~~~~~iY 244 (258)
T COG3638 224 GRIVFDGPASELTDEALDEIY 244 (258)
T ss_pred CcEEEeCChhhhhHHHHHHHh
Confidence 999999999998765544333
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-51 Score=420.88 Aligned_cols=220 Identities=30% Similarity=0.460 Sum_probs=206.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++||++.|. ...+|+|+|+++++||+++|+||||||||||||+|||+.+|++|+|.++|
T Consensus 2 ~~i~l~~v~K~yg-----------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 2 AELELKNVRKSFG-----------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred cEEEEeeeEEEcC-----------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 3689999999992 22399999999999999999999999999999999999999999999999
Q ss_pred eeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 102 SPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 102 ~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
++++. .-.+|.+|+|||+..+||.|||+||+.|+.+..+.++++.+++++++.+.++|++..+++ |++|||||||||+
T Consensus 65 ~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~-P~~LSGGQrQRVA 143 (338)
T COG3839 65 RDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK-PLQLSGGQRQRVA 143 (338)
T ss_pred EECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcC-cccCChhhHHHHH
Confidence 99864 334688999999999999999999999999887777889999999999999999999988 5999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
|||||+++|+++|||||.|.||...+..+...|+++.++.|.|+|.+|||.. |+..++||+.+|++|++...|++.++.
T Consensus 144 laRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 144 LARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 9999999999999999999999999999999999999988999999999986 799999999999999999999999983
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=421.47 Aligned_cols=233 Identities=27% Similarity=0.417 Sum_probs=211.8
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++||+++| +...+++|+|++|++||+++|+|||||||||||++|||+..|++|+|.++|
T Consensus 4 ~~l~i~~v~k~y-----------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G 66 (352)
T COG3842 4 PALEIRNVSKSF-----------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG 66 (352)
T ss_pred ceEEEEeeeeec-----------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 469999999999 567899999999999999999999999999999999999999999999999
Q ss_pred eeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 102 SPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 102 ~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
++++. ...+|.+|+|||+..|||.|||+||+.|+.++.. .++++.+++++++++.++|++..+++ +.+|||||||||
T Consensus 67 ~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-p~qLSGGQqQRV 145 (352)
T COG3842 67 EDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-PHQLSGGQQQRV 145 (352)
T ss_pred EECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC-hhhhChHHHHHH
Confidence 99864 3457889999999999999999999999998633 35567889999999999999998888 599999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+|||||+.+|++||||||.|+||..-+.++...|+++.++.|.|.|++|||.+ |...++|||.+|++|+|...|+|+++
T Consensus 146 ALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 146 ALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred HHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999987 68999999999999999999999998
Q ss_pred HHHHHhCCCCCCCCCChHHHHH
Q 007383 260 ETFLLSSGFSVPPQLNALEYTM 281 (605)
Q Consensus 260 ~~~~~~~g~~~p~~~n~ad~~~ 281 (605)
|..|...=.|||+-
T Consensus 225 --------Y~~P~~~fVA~FiG 238 (352)
T COG3842 225 --------YERPATRFVADFIG 238 (352)
T ss_pred --------hhCcchHHHHHHhC
Confidence 33454444455544
No 21
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-50 Score=398.31 Aligned_cols=217 Identities=25% Similarity=0.446 Sum_probs=191.9
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++|+++.|. .+++|+|||+++++|++++|+||||||||||+|+|.|+++|.+|+|.++|
T Consensus 3 ~~i~v~nl~v~y~-----------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g 65 (254)
T COG1121 3 PMIEVENLTVSYG-----------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFG 65 (254)
T ss_pred cEEEEeeeEEEEC-----------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcc
Confidence 4699999999993 22699999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccCceEEEcCCC---CCCCCCCHHHHHHHHHhc----CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHH
Q 007383 102 SPIKPSSFRKLSAYVPQHD---ACIPSLTVYETFLFSARL----LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG 174 (605)
++.....-+.+||||||.. .-|| +||+|.+..+... +....++.+++++++|+.+|+.+..++.+ ++||||
T Consensus 66 ~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i-~~LSGG 143 (254)
T COG1121 66 KPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI-GELSGG 143 (254)
T ss_pred ccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc-cccCcH
Confidence 9875444457899999964 3344 7999999987432 12233445789999999999999999996 999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
|+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++ |+||++++||++. +.++||+|+.|+ +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~-v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGL-VMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHH-hHhhCCEEEEEc-CeeEecc
Confidence 999999999999999999999999999999999999999999987 9999999999994 899999999996 5778899
Q ss_pred ChhhHH
Q 007383 255 TLASLE 260 (605)
Q Consensus 255 ~~~~~~ 260 (605)
+++++.
T Consensus 221 ~~~~~~ 226 (254)
T COG1121 221 PPEEVL 226 (254)
T ss_pred Chhhcc
Confidence 998874
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-51 Score=383.82 Aligned_cols=221 Identities=29% Similarity=0.443 Sum_probs=205.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|++.+++++|+ ...++++||||+++.||++||+|||||||||+|++|++++.|++|+|+++|.
T Consensus 1 Ml~v~~l~K~y~----------------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~ 64 (245)
T COG4555 1 MLEVTDLTKSYG----------------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV 64 (245)
T ss_pred Ceeeeehhhhcc----------------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeec
Confidence 578999999984 2345999999999999999999999999999999999999999999999998
Q ss_pred eCC--cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 103 PIK--PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
+.. +...|++||.++.+..++..||++|||.|.+++++..+.+.+++++++.+.++|.++.|+++ +++|.|+||||+
T Consensus 65 d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv-~~~S~G~kqkV~ 143 (245)
T COG4555 65 DTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV-GEFSTGMKQKVA 143 (245)
T ss_pred ccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH-hhhchhhHHHHH
Confidence 863 56788999999988889999999999999999987788889999999999999999999996 999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
|||||+++|++++|||||||||..+...+.+.++++.. .|++||++||.++ |+..+||++++|++|++++.|+++++.
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 99999999999999999999999999999999999975 4899999999998 699999999999999999999998875
Q ss_pred HH
Q 007383 261 TF 262 (605)
Q Consensus 261 ~~ 262 (605)
..
T Consensus 222 ~r 223 (245)
T COG4555 222 AR 223 (245)
T ss_pred HH
Confidence 43
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=396.33 Aligned_cols=219 Identities=29% Similarity=0.448 Sum_probs=200.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++|+++.+ +...+++|||++|+.||++|++|||||||||||++|||++.|++|.|.+||+
T Consensus 2 ~i~i~~~~~~~-----------------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~ 64 (345)
T COG1118 2 SIRINNVKKRF-----------------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR 64 (345)
T ss_pred ceeehhhhhhc-----------------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCE
Confidence 47788888877 4567899999999999999999999999999999999999999999999999
Q ss_pred ---eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 ---PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL--VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ---~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~--~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
+.+. ..-.++||||+|+..+|+.|||.||+.|+.+.. ..++.+.+.+++++|+.+.|++..++. |.+||||||
T Consensus 65 ~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-P~QLSGGQr 143 (345)
T COG1118 65 VLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-PAQLSGGQR 143 (345)
T ss_pred eccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-chhcChHHH
Confidence 5543 233477999999999999999999999998774 235667889999999999999999877 699999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
|||++||||+.+|++||||||+++||..-+.++-+.|+++.++.|.|++++|||++ |+.+++|||++|++|+|...|++
T Consensus 144 QRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p 222 (345)
T COG1118 144 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPP 222 (345)
T ss_pred HHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCH
Confidence 99999999999999999999999999999999999999999888999999999998 69999999999999999999999
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
+|+.
T Consensus 223 ~ev~ 226 (345)
T COG1118 223 DEVY 226 (345)
T ss_pred HHHh
Confidence 9983
No 24
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-49 Score=383.85 Aligned_cols=224 Identities=31% Similarity=0.428 Sum_probs=197.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++|+++.|+.+ .....+|+|||+++.+||++||+|+||||||||.++|+|+.+|++|+|.++|
T Consensus 2 ~~l~v~nl~~~y~~~-------------~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G 68 (252)
T COG1124 2 TLLSVRNLSIVYGGG-------------KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68 (252)
T ss_pred ceEEEeceEEEecCC-------------cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 468999999999521 1223699999999999999999999999999999999999999999999999
Q ss_pred eeCCcc----cccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 102 SPIKPS----SFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 102 ~~~~~~----~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++..+. .+++.+.+||||+ .+.|..||++.|.-+....+.+ +.++++.++++.+||.+..-++.|.+|||||
T Consensus 69 ~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~--~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ 146 (252)
T COG1124 69 KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS--KSQQRIAELLDQVGLPPSFLDRRPHELSGGQ 146 (252)
T ss_pred cccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCcc--HHHHHHHHHHHHcCCCHHHHhcCchhcChhH
Confidence 887543 4678899999997 4899999999999887653332 3445599999999997654444479999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
|||++|||||+.+|++|+||||||+||+..+.+|+++|.+++++.+.|+|++|||.+. +..+|||+++|++|++++.++
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeCCeEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999985 899999999999999999999
Q ss_pred hhhHHH
Q 007383 256 LASLET 261 (605)
Q Consensus 256 ~~~~~~ 261 (605)
.+++.+
T Consensus 226 ~~~l~~ 231 (252)
T COG1124 226 TEELLS 231 (252)
T ss_pred hhhhhc
Confidence 988743
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.3e-48 Score=407.46 Aligned_cols=222 Identities=28% Similarity=0.454 Sum_probs=200.8
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....++++||++.| +.+.+|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~i~i~~l~k~~-----------------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i 66 (306)
T PRK13537 4 SVAPIDFRNVEKRY-----------------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66 (306)
T ss_pred CCceEEEEeEEEEE-----------------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 34579999999999 3467999999999999999999999999999999999999999999999
Q ss_pred CCeeCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 100 NSSPIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 100 ~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
+|+++.. ...++.+||++|++.+++.+||+||+.+.+..++.+..+..++++++++.++|.+..++++ ++|||||||
T Consensus 67 ~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~q 145 (306)
T PRK13537 67 CGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV-GELSGGMKR 145 (306)
T ss_pred CCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCch-hhCCHHHHH
Confidence 9998743 3456789999999999999999999998776654444556678899999999998888885 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|++||+||+++|++|||||||+|||+.++..+.++|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999975 4899999999998 688999999999999999999998
Q ss_pred hHHH
Q 007383 258 SLET 261 (605)
Q Consensus 258 ~~~~ 261 (605)
++.+
T Consensus 224 ~l~~ 227 (306)
T PRK13537 224 ALIE 227 (306)
T ss_pred HHHh
Confidence 8754
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.8e-48 Score=410.69 Aligned_cols=222 Identities=29% Similarity=0.429 Sum_probs=198.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|.. +.+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 1 mI~~~~lsk~y~~-------------~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~ 67 (343)
T TIGR02314 1 MIKLSNITKVFHQ-------------GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQ 67 (343)
T ss_pred CEEEEEEEEEECC-------------CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 4899999999941 112357999999999999999999999999999999999999999999999999
Q ss_pred eCCc---c---cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP---S---SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~---~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.. . ..++.+||++|+..+++.+||+||+.+.....+.++++.++++.++++.+||.+..++. +.+||||||
T Consensus 68 ~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-~~~LSgGqk 146 (343)
T TIGR02314 68 DLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-PSNLSGGQK 146 (343)
T ss_pred ECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCHHHH
Confidence 8752 1 24678999999999999999999999986654344556677899999999999888877 599999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
|||+|||||+.+|++|+|||||+|||+.++..++++|++++++.|.|||++||+++ .+.++||++++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999998766899999999998 48899999999999999999999
Q ss_pred hhH
Q 007383 257 ASL 259 (605)
Q Consensus 257 ~~~ 259 (605)
+++
T Consensus 226 ~~v 228 (343)
T TIGR02314 226 SEI 228 (343)
T ss_pred HHH
Confidence 876
No 27
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.7e-49 Score=368.52 Aligned_cols=214 Identities=30% Similarity=0.460 Sum_probs=197.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|+ +.+++|+||||.+++||++-|+||||||||||||+|.+..+|+.|+|.+||+
T Consensus 1 mI~f~~V~k~Y~----------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~ 64 (223)
T COG2884 1 MIRFENVSKAYP----------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGH 64 (223)
T ss_pred CeeehhhhhhcC----------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCe
Confidence 589999999995 3367999999999999999999999999999999999999999999999999
Q ss_pred eCCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
+++. .-+|++||.|+||..+.+..||+||+.|+.+..+.+.++.++++.++|+.+||.+..+.. |.+||||||
T Consensus 65 dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~l-P~~LSGGEQ 143 (223)
T COG2884 65 DLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL-PSQLSGGEQ 143 (223)
T ss_pred ecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcC-ccccCchHH
Confidence 9752 236889999999999999999999999999888888889999999999999999888766 699999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
|||+||||++.+|++|+.||||.+|||..+.+|++++.++.. .|.||++.|||.+. +.++-.|++.|++|+++.+..
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~l-v~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLEL-VNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHH-HHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999999999975 59999999999874 777888999999999987653
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-48 Score=388.82 Aligned_cols=217 Identities=31% Similarity=0.437 Sum_probs=192.6
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.| +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~-----------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 63 (235)
T cd03261 1 IELRGLTKSF-----------------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGED 63 (235)
T ss_pred CeEEEEEEEE-----------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 4789999988 23569999999999999999999999999999999999999999999999998
Q ss_pred CCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 104 IKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 104 ~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
+.. ..+++.++|++|++.+++.+||+||+.+..... ..+.++.++++.++++.+|+.+..++. +++||||||
T Consensus 64 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~ 142 (235)
T cd03261 64 ISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-PAELSGGMK 142 (235)
T ss_pred ccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCHHHH
Confidence 642 235678999999999999999999999875432 223444567788999999998877777 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
|||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|++
T Consensus 143 qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 221 (235)
T cd03261 143 KRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTP 221 (235)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCH
Confidence 99999999999999999999999999999999999999998655789999999998 58889999999999999999988
Q ss_pred hhH
Q 007383 257 ASL 259 (605)
Q Consensus 257 ~~~ 259 (605)
+++
T Consensus 222 ~~~ 224 (235)
T cd03261 222 EEL 224 (235)
T ss_pred HHH
Confidence 765
No 29
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-48 Score=387.58 Aligned_cols=222 Identities=28% Similarity=0.434 Sum_probs=203.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+++++|++|+|+ +.+.+|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~i~~~~l~~~y~----------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g 65 (235)
T COG1122 2 RMIEAENLSFRYP----------------GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDG 65 (235)
T ss_pred ceEEEEEEEEEcC----------------CCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECC
Confidence 3588999999994 126899999999999999999999999999999999999999999999999
Q ss_pred eeCC----cccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 102 SPIK----PSSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 102 ~~~~----~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
.++. ...+++.+|||+|++. .+..-||.|.+.|+...++.+.++.+++++++++.+|+.+.+++. +..||||||
T Consensus 66 ~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-p~~LSGGqk 144 (235)
T COG1122 66 LDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-PFNLSGGQK 144 (235)
T ss_pred eeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-ccccCCcce
Confidence 9865 4568899999999973 344569999999998877777778999999999999999998877 599999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
|||+||.+|+.+|++|+|||||+|||+..+.++++.++++.++.|+|||++|||.+ .+.+++|++++|++|+++++|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCH
Confidence 99999999999999999999999999999999999999999877899999999998 58999999999999999999998
Q ss_pred hhHHH
Q 007383 257 ASLET 261 (605)
Q Consensus 257 ~~~~~ 261 (605)
+++.+
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 77643
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-48 Score=409.21 Aligned_cols=220 Identities=25% Similarity=0.403 Sum_probs=199.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+
T Consensus 3 ~l~i~~l~~~~~----------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~ 66 (356)
T PRK11650 3 GLKLQAVRKSYD----------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGR 66 (356)
T ss_pred EEEEEeEEEEeC----------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCE
Confidence 589999999982 2356999999999999999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++.. ...++.+|||+|++.++|.+||+||+.|+.+..+.++++.+++++++++.+||.+..++. +++|||||||||+|
T Consensus 67 ~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSgGq~QRval 145 (356)
T PRK11650 67 VVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRK-PRELSGGQRQRVAM 145 (356)
T ss_pred ECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-hhhCCHHHHHHHHH
Confidence 8753 223578999999999999999999999987654334556677899999999999888887 59999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||||+.+|++|||||||++||+.++..+.+.|+++.++.|.|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998766899999999997 589999999999999999999998873
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=8.1e-48 Score=408.12 Aligned_cols=220 Identities=27% Similarity=0.378 Sum_probs=200.9
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++||+++| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~-----------------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g 65 (353)
T TIGR03265 3 PYLSIDNIRKRF-----------------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG 65 (353)
T ss_pred cEEEEEEEEEEe-----------------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECC
Confidence 469999999998 346699999999999999999999999999999999999999999999999
Q ss_pred eeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 102 SPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 102 ~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
+++.. ...++.+|||+|+..+||.+||+||+.|+....+.++++.+++++++++.++|.+..++. +++|||||||||+
T Consensus 66 ~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-~~~LSgGq~QRva 144 (353)
T TIGR03265 66 RDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-PGQLSGGQQQRVA 144 (353)
T ss_pred EECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-hhhCCHHHHHHHH
Confidence 98752 224578999999999999999999999987654444556778899999999999988887 5999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
|||||+.+|+++||||||++||+.++..+.+.|+++.++.|.|+|++|||++ ++..++|++++|++|+++..|+++++.
T Consensus 145 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 145 LARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999998777899999999998 689999999999999999999998874
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-47 Score=406.73 Aligned_cols=219 Identities=22% Similarity=0.387 Sum_probs=200.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||++.| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~-----------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g 67 (351)
T PRK11432 5 NFVVLKNITKRF-----------------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG 67 (351)
T ss_pred cEEEEEeEEEEE-----------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECC
Confidence 369999999998 346699999999999999999999999999999999999999999999999
Q ss_pred eeCCcc-cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 102 SPIKPS-SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 102 ~~~~~~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
+++... ..++.+|||+|+..++|.+||+||+.|+.+..+.++++.+++++++++.+||.+..++. +++|||||||||+
T Consensus 68 ~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-~~~LSgGq~QRVa 146 (351)
T PRK11432 68 EDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-VDQISGGQQQRVA 146 (351)
T ss_pred EECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCHHHHHHHH
Confidence 987532 23578999999999999999999999987654445566778999999999999888877 5999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|+|+|++|||++ ++.+++|++++|++|+++..|+++++
T Consensus 147 LARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 147 LARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998777899999999998 68999999999999999999999887
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.7e-47 Score=403.60 Aligned_cols=222 Identities=31% Similarity=0.467 Sum_probs=200.1
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
+...|+++||++.| +.+.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 38 ~~~~i~i~nl~k~y-----------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i 100 (340)
T PRK13536 38 STVAIDLAGVSKSY-----------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100 (340)
T ss_pred CceeEEEEEEEEEE-----------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEE
Confidence 44579999999999 3467999999999999999999999999999999999999999999999
Q ss_pred CCeeCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 100 NSSPIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 100 ~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
+|+++.. ...++.+||++|++.+++.+||.||+.+....++.+..+.+++++++++.++|.+..++++ ++|||||||
T Consensus 101 ~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~-~~LS~G~kq 179 (340)
T PRK13536 101 LGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV-SDLSGGMKR 179 (340)
T ss_pred CCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCCh-hhCCHHHHH
Confidence 9998742 3456789999999999999999999998765544444455667888999999998888885 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|++||+||+++|++|||||||+|||+.++..+.++|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~ 257 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPH 257 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999976 4899999999998 689999999999999999999999
Q ss_pred hHHH
Q 007383 258 SLET 261 (605)
Q Consensus 258 ~~~~ 261 (605)
++.+
T Consensus 258 ~l~~ 261 (340)
T PRK13536 258 ALID 261 (340)
T ss_pred HHHh
Confidence 8754
No 34
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2e-47 Score=407.39 Aligned_cols=221 Identities=28% Similarity=0.441 Sum_probs=200.1
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....|+++|+++.| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.+
T Consensus 11 ~~~~L~l~~l~~~~-----------------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~ 73 (375)
T PRK09452 11 LSPLVELRGISKSF-----------------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73 (375)
T ss_pred CCceEEEEEEEEEE-----------------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 33469999999998 3457999999999999999999999999999999999999999999999
Q ss_pred CCeeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 100 NSSPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 100 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
+|+++.. ...++.+|||+|++.++|.+||+||+.|+....+.+..+.+++++++++.++|.+..++. +.+||||||||
T Consensus 74 ~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-p~~LSgGq~QR 152 (375)
T PRK09452 74 DGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRK-PHQLSGGQQQR 152 (375)
T ss_pred CCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCHHHHHH
Confidence 9998752 223577999999999999999999999987644334455677899999999999888887 59999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
|+|||||+.+|++|||||||+|||+..+..+.+.|++++++.|.|+|++|||+. ++..++|++++|++|+++..|++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999998777899999999997 6899999999999999999999988
Q ss_pred H
Q 007383 259 L 259 (605)
Q Consensus 259 ~ 259 (605)
+
T Consensus 232 i 232 (375)
T PRK09452 232 I 232 (375)
T ss_pred H
Confidence 7
No 35
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-47 Score=405.17 Aligned_cols=222 Identities=27% Similarity=0.414 Sum_probs=201.1
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
...+|+++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.+
T Consensus 16 ~~~~l~l~~v~~~~-----------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i 78 (377)
T PRK11607 16 LTPLLEIRNLTKSF-----------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78 (377)
T ss_pred CCceEEEEeEEEEE-----------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 34569999999998 2356999999999999999999999999999999999999999999999
Q ss_pred CCeeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 100 NSSPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 100 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
+|+++.. ...++.+|||+|++.+||.+||.||+.|+.+....+..+.+++++++++.++|.+..++. +++||||||||
T Consensus 79 ~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-~~~LSgGq~QR 157 (377)
T PRK11607 79 DGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRK-PHQLSGGQRQR 157 (377)
T ss_pred CCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCHHHHHH
Confidence 9998742 234678999999999999999999999987653334556678899999999999888877 59999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
|+|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|++|||++ ++..++|++++|++|+++..|++++
T Consensus 158 VaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 999999999999999999999999999999999999998777899999999998 6899999999999999999999988
Q ss_pred HH
Q 007383 259 LE 260 (605)
Q Consensus 259 ~~ 260 (605)
+.
T Consensus 237 ~~ 238 (377)
T PRK11607 237 IY 238 (377)
T ss_pred HH
Confidence 73
No 36
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-47 Score=379.19 Aligned_cols=217 Identities=27% Similarity=0.391 Sum_probs=192.4
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|++++| +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|++
T Consensus 1 i~~~~~~~~~-----------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 63 (220)
T cd03265 1 IEVENLVKKY-----------------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD 63 (220)
T ss_pred CEEEEEEEEE-----------------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence 4789999988 24579999999999999999999999999999999999999999999999987
Q ss_pred CCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 104 IKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 104 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+.. ...++.++|++|++.+++.+||+||+.+.....+...++.+++++++++.+++.+..++. +.+||||||||++|
T Consensus 64 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qr~~l 142 (220)
T cd03265 64 VVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-VKTYSGGMRRRLEI 142 (220)
T ss_pred cCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhCCHHHHHHHHH
Confidence 642 234567999999999999999999999876543333344566789999999998877777 49999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
|+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999999999998755789999999998 58889999999999999999887653
No 37
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.6e-47 Score=403.90 Aligned_cols=219 Identities=24% Similarity=0.365 Sum_probs=199.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCc--cEEEEC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTN--GTILLN 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~--G~I~~~ 100 (605)
.|+++||+++| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++
T Consensus 5 ~l~~~~l~~~~-----------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~ 67 (362)
T TIGR03258 5 GIRIDHLRVAY-----------------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIA 67 (362)
T ss_pred EEEEEEEEEEE-----------------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEEC
Confidence 48999999998 23569999999999999999999999999999999999999999 999999
Q ss_pred CeeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 101 SSPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 101 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
|+++.. ...++.+|||+|+..+++.+||+||+.|+....+.++++.+++++++++.+||.+..++. +++|||||||||
T Consensus 68 g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-~~~LSgGq~QRv 146 (362)
T TIGR03258 68 DRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-PAQLSGGMQQRI 146 (362)
T ss_pred CEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-hhhCCHHHHHHH
Confidence 998742 223577999999999999999999999987654445556677899999999999988887 599999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASR-HRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~-g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
+|||||+.+|++|||||||+|||+..+.++.+.|++++++. |.|+|++|||++ ++..++|++++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999998764 789999999998 5899999999999999999999988
Q ss_pred HH
Q 007383 259 LE 260 (605)
Q Consensus 259 ~~ 260 (605)
+.
T Consensus 226 ~~ 227 (362)
T TIGR03258 226 LY 227 (362)
T ss_pred HH
Confidence 73
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-47 Score=377.06 Aligned_cols=212 Identities=32% Similarity=0.487 Sum_probs=187.0
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~-----------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 63 (213)
T cd03259 1 LELKGLSKTYG-----------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD 63 (213)
T ss_pred CeeeeeEEEeC-----------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 46899999882 3579999999999999999999999999999999999999999999999998
Q ss_pred CCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 104 IKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 104 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
+.. ...++.++|++|++.+++.+|++||+.+..........+.+++++++++.+++.+..++. +.+||||||||++||
T Consensus 64 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~qrl~la 142 (213)
T cd03259 64 VTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-PHELSGGQQQRVALA 142 (213)
T ss_pred cCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCCHHHHHHHHHH
Confidence 743 234567999999999999999999999875433223344556788999999998877777 499999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999998655889999999997 478999999999999998765
No 39
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-48 Score=375.01 Aligned_cols=220 Identities=28% Similarity=0.400 Sum_probs=201.0
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++||++++ +...+++|||+++++||+++|+||||||||||+|+|+|.++|++|+|.++|
T Consensus 3 ~lL~v~~l~k~F-----------------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G 65 (250)
T COG0411 3 PLLEVRGLSKRF-----------------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65 (250)
T ss_pred ceeeeccceeec-----------------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECC
Confidence 468899999998 678899999999999999999999999999999999999999999999999
Q ss_pred eeCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC---------CC---ChhHHHHHHHHHHHHcCCcccccc
Q 007383 102 SPIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL---------VP---KTSQIDTIITVLLTELRLAHLAST 165 (605)
Q Consensus 102 ~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~---------~~---~~~~~~~~v~~~l~~l~L~~~~~~ 165 (605)
++++. +..+..++.-||...+|++|||.||+..++... +. ..++..+++.++|+.+||.+.+++
T Consensus 66 ~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~ 145 (250)
T COG0411 66 RDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR 145 (250)
T ss_pred cccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc
Confidence 99863 234566899999999999999999999885421 11 345667889999999999999998
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
.. ++||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|++++++.|.||+++.||++. ++++||||++|
T Consensus 146 ~A-~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl 223 (250)
T COG0411 146 PA-GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVL 223 (250)
T ss_pred hh-hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEec
Confidence 84 99999999999999999999999999999999999999999999999998778999999999995 99999999999
Q ss_pred eCCeEEEecChhhHH
Q 007383 246 SKGSVVHHGTLASLE 260 (605)
Q Consensus 246 ~~G~iv~~g~~~~~~ 260 (605)
+.|+++.+|+|+++.
T Consensus 224 ~~G~~IAeG~P~eV~ 238 (250)
T COG0411 224 NYGEVIAEGTPEEVR 238 (250)
T ss_pred cCCcCcccCCHHHHh
Confidence 999999999999974
No 40
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-48 Score=366.80 Aligned_cols=229 Identities=26% Similarity=0.418 Sum_probs=201.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~ 96 (605)
..++++||++.| +.+.+|+|||+.|++++++|++|||||||||||+++..+... .+|+
T Consensus 6 ~~~~~~~l~~yY-----------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~ 68 (253)
T COG1117 6 PAIEVRDLNLYY-----------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE 68 (253)
T ss_pred ceeEecceeEEE-----------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEE
Confidence 458999999999 578899999999999999999999999999999999998765 4699
Q ss_pred EEECCeeCC-----cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc----ccccc
Q 007383 97 ILLNSSPIK-----PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL----ASTRL 167 (605)
Q Consensus 97 I~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~~ 167 (605)
|.++|+++. ...+|+++|+|+|.|.-|| +|++||+.|+.++.+..+++.+++++..|+...|.+. .++.
T Consensus 69 v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s- 146 (253)
T COG1117 69 VLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKS- 146 (253)
T ss_pred EEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCC-
Confidence 999999874 2468999999999999999 8999999999998765447788899999998888532 2223
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+|||||+||++|||||+.+|+|||||||||+|||.+..+|-+++.+|++ .-|||++||.+. .+.+..|+..++..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmq-QAaRvSD~taFf~~ 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQ-QAARVSDYTAFFYL 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHH-HHHHHhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999974 579999999998 58999999999999
Q ss_pred CeEEEecChhhHHHHHHhCCCCCCCCCChHHHH
Q 007383 248 GSVVHHGTLASLETFLLSSGFSVPPQLNALEYT 280 (605)
Q Consensus 248 G~iv~~g~~~~~~~~~~~~g~~~p~~~n~ad~~ 280 (605)
|+++++|+.+++ |.-|.+....||+
T Consensus 224 G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 224 GELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred cEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 999999999887 3345555555554
No 41
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.5e-47 Score=400.72 Aligned_cols=219 Identities=29% Similarity=0.477 Sum_probs=197.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|+++.| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 2 ~L~i~~l~~~~-----------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~ 64 (353)
T PRK10851 2 SIEIANIKKSF-----------------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGT 64 (353)
T ss_pred EEEEEEEEEEe-----------------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 48899999998 3457999999999999999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL----VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
++.. ...++.+|||+|++.+++.+||+||+.|+.... ..+.++.+++++++++.++|.+..+++ +.+|||||||
T Consensus 65 ~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSgGq~Q 143 (353)
T PRK10851 65 DVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-PAQLSGGQKQ 143 (353)
T ss_pred ECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCHHHHH
Confidence 8753 223567999999999999999999999986542 123455677899999999999888877 4999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|+|++|||++ ++.+++|++++|++|++++.|+++
T Consensus 144 RvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~ 222 (353)
T PRK10851 144 RVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPD 222 (353)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999998766899999999998 589999999999999999999998
Q ss_pred hHH
Q 007383 258 SLE 260 (605)
Q Consensus 258 ~~~ 260 (605)
++.
T Consensus 223 ~i~ 225 (353)
T PRK10851 223 QVW 225 (353)
T ss_pred HHH
Confidence 873
No 42
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-47 Score=400.74 Aligned_cols=223 Identities=29% Similarity=0.426 Sum_probs=197.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|.. +...+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 1 mi~i~~l~~~y~~-------------~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~ 67 (343)
T PRK11153 1 MIELKNISKVFPQ-------------GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQ 67 (343)
T ss_pred CEEEEeEEEEeCC-------------CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 4789999999831 112457999999999999999999999999999999999999999999999999
Q ss_pred eCCc---c---cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP---S---SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~---~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.. . .+++.+|||+|++.+++.+||+||+.+.....+.+..+.+++++++++.+||.+..++. +++||||||
T Consensus 68 ~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSgGq~ 146 (343)
T PRK11153 68 DLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-PAQLSGGQK 146 (343)
T ss_pred ECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCHHHH
Confidence 8752 1 24678999999999999999999999886554334445567889999999998877777 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999998766899999999998 58889999999999999999998
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
+++.
T Consensus 226 ~~~~ 229 (343)
T PRK11153 226 SEVF 229 (343)
T ss_pred HHHH
Confidence 8763
No 43
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.8e-47 Score=393.68 Aligned_cols=220 Identities=31% Similarity=0.470 Sum_probs=195.9
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||+++| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~i~~~~l~~~~-----------------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g 65 (303)
T TIGR01288 3 VAIDLVGVSKSY-----------------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLG 65 (303)
T ss_pred cEEEEEeEEEEe-----------------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 469999999998 345699999999999999999999999999999999999999999999999
Q ss_pred eeCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 102 SPIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 102 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
+++.. ...++.+||++|++.+++.+||+||+.+.....+.+.++.+++++++++.+++.+..++.+ ++||||||||+
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~-~~LSgG~~qrv 144 (303)
T TIGR01288 66 EPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV-ALLSGGMKRRL 144 (303)
T ss_pred EECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCch-hhCCHHHHHHH
Confidence 98642 2356789999999999999999999987654433333445567888999999988888875 99999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999976 4889999999998 58899999999999999999999887
Q ss_pred HH
Q 007383 260 ET 261 (605)
Q Consensus 260 ~~ 261 (605)
..
T Consensus 223 ~~ 224 (303)
T TIGR01288 223 ID 224 (303)
T ss_pred Hh
Confidence 43
No 44
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-46 Score=379.70 Aligned_cols=218 Identities=29% Similarity=0.462 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~-----------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (239)
T cd03296 2 SIEVRNVSKRFG-----------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE 64 (239)
T ss_pred EEEEEeEEEEEC-----------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 489999999982 357999999999999999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP----KTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~----~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
++.. ...++.++|++|++.+++.+||+||+.+.....+. ...+..++++++++.+|+.+..++. +.+|||||||
T Consensus 65 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~q 143 (239)
T cd03296 65 DATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-PAQLSGGQRQ 143 (239)
T ss_pred ECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCCHHHHH
Confidence 8743 22346799999999999899999999987543221 2233456788999999998877777 4999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.+|++++|++|++++.|+++
T Consensus 144 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHH
Confidence 9999999999999999999999999999999999999998755889999999997 478899999999999999999987
Q ss_pred hH
Q 007383 258 SL 259 (605)
Q Consensus 258 ~~ 259 (605)
++
T Consensus 223 ~~ 224 (239)
T cd03296 223 EV 224 (239)
T ss_pred HH
Confidence 65
No 45
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=402.26 Aligned_cols=219 Identities=29% Similarity=0.450 Sum_probs=197.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|++++| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 3 ~l~i~~l~~~~-----------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~ 65 (369)
T PRK11000 3 SVTLRNVTKAY-----------------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEK 65 (369)
T ss_pred EEEEEEEEEEe-----------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 48999999998 2457999999999999999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++.. ...++.+|||+|+..+++.+||+||+.|.....+.+.++.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 66 ~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-~~~LSgGq~QRvaL 144 (369)
T PRK11000 66 RMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-PKALSGGQRQRVAI 144 (369)
T ss_pred ECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-hhhCCHHHHHHHHH
Confidence 8742 223567999999999999999999999986543334455667899999999999888877 49999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998766899999999997 588999999999999999999998873
No 46
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-47 Score=353.97 Aligned_cols=216 Identities=25% Similarity=0.416 Sum_probs=193.1
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
+.+++|.++|. . .=-.++++++.||++||+||||||||||||+|+|...|.+|+|++||++
T Consensus 2 l~L~~V~~~y~-----------------~--~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d 62 (231)
T COG3840 2 LALDDVRFSYG-----------------H--LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVD 62 (231)
T ss_pred ccccceEEeeC-----------------c--ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCee
Confidence 56778888882 1 2356889999999999999999999999999999999999999999999
Q ss_pred CCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 104 IKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 104 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
.+. .-.+|-+++++|+.++|..+||.+|+.++..---+-..+.+++++.++..+||..+.++. |.+|||||||||++|
T Consensus 63 ~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RL-P~~LSGGqRQRvALA 141 (231)
T COG3840 63 HTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRL-PGELSGGQRQRVALA 141 (231)
T ss_pred cCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhC-ccccCchHHHHHHHH
Confidence 753 335677999999999999999999999875431122456778899999999999988776 699999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
|+|+++-+||+||||+|.|||.-+.++..++.+++.+++.|++++||+|+ ++.+++|+++++++|+|.+.|+.++..
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999999999999999999999999999999999998 699999999999999999999988763
No 47
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-46 Score=374.78 Aligned_cols=217 Identities=32% Similarity=0.454 Sum_probs=189.3
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.|.. ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 l~~~~l~~~~~~-------------~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 67 (220)
T cd03293 1 LEVRNVSKTYGG-------------GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP 67 (220)
T ss_pred CeEEEEEEEcCC-------------CCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 468999998831 0112579999999999999999999999999999999999999999999999998
Q ss_pred CCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHH
Q 007383 104 IKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGL 183 (605)
Q Consensus 104 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~ 183 (605)
+. ..++.++|++|++.+++.+||+||+.+.....+.+.++..++++++++.+++.+..++. +++||||||||++||+
T Consensus 68 ~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~qrl~la~ 144 (220)
T cd03293 68 VT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-PHQLSGGMRQRVALAR 144 (220)
T ss_pred Cc--cccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-cccCCHHHHHHHHHHH
Confidence 75 34677999999999999899999999876543333344566788999999998877777 4999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe--CCeEEEecChh
Q 007383 184 SLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS--KGSVVHHGTLA 257 (605)
Q Consensus 184 aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~--~G~iv~~g~~~ 257 (605)
||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|+ +|+++..++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999997656889999999997 4788999999999 79999887653
No 48
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-46 Score=378.05 Aligned_cols=222 Identities=29% Similarity=0.435 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|.. +.+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ~i~~~~l~~~~~~-------------~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 67 (233)
T cd03258 1 MIELKNVSKVFGD-------------TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGT 67 (233)
T ss_pred CeEEecceEEccC-------------CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 3789999998831 001137999999999999999999999999999999999999999999999999
Q ss_pred eCCcc------cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKPS------SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++... ..++.++|++|++.+++.+|++||+.+..........+..+.++++++.+++.+..++. +.+||||||
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~ 146 (233)
T cd03258 68 DLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-PAQLSGGQK 146 (233)
T ss_pred EcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-hhhCCHHHH
Confidence 87421 23577999999999999999999999875443333344566788999999998877777 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 147 QRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999998765899999999997 57889999999999999999987
Q ss_pred hhH
Q 007383 257 ASL 259 (605)
Q Consensus 257 ~~~ 259 (605)
+++
T Consensus 226 ~~~ 228 (233)
T cd03258 226 EEV 228 (233)
T ss_pred HHH
Confidence 765
No 49
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.7e-46 Score=371.88 Aligned_cols=212 Identities=26% Similarity=0.458 Sum_probs=187.6
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|++++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 i~~~~l~~~~~-----------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~ 63 (213)
T cd03301 1 VELENVTKRFG-----------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRD 63 (213)
T ss_pred CEEEeeEEEEC-----------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 47899999883 3569999999999999999999999999999999999999999999999998
Q ss_pred CCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 104 IKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 104 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
+.. ...++.++|++|++.+++.+|++||+.+.........++.+++++++++.+|+.+..++.+ ++||||||||++||
T Consensus 64 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qr~~la 142 (213)
T cd03301 64 VTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-KQLSGGQRQRVALG 142 (213)
T ss_pred CCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-hhCCHHHHHHHHHH
Confidence 742 2234679999999999989999999998754433334455667889999999988777774 99999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999998755889999999997 588899999999999998875
No 50
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-48 Score=364.09 Aligned_cols=219 Identities=28% Similarity=0.483 Sum_probs=199.6
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|..+||.++| +++++++|||+++++||+++++|||||||||.+.++.|+.+|++|+|.+||
T Consensus 3 ~~L~a~~l~K~y-----------------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~ 65 (243)
T COG1137 3 STLVAENLAKSY-----------------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65 (243)
T ss_pred cEEEehhhhHhh-----------------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECC
Confidence 468899999988 467899999999999999999999999999999999999999999999999
Q ss_pred eeCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 102 SPIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP--KTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 102 ~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
.+++. ...|..+||+||++..|..|||+||+......... +..+.+++++++|+++++.+..+++ ...|||||
T Consensus 66 ~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~-a~sLSGGE 144 (243)
T COG1137 66 EDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSK-AYSLSGGE 144 (243)
T ss_pred cccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCc-ccccccch
Confidence 99874 23455699999999999999999999988777432 2335566788999999999999888 58999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
|||+.|||||+.+|+.++||||++|.||.+..+|-++++.|++ .|..|++|-|+.+ |...++||.+++++|++..+|+
T Consensus 145 RRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 145 RRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHH-HHHhhhheEEEEecCeEEecCC
Confidence 9999999999999999999999999999999999999999986 5999999999999 6899999999999999999999
Q ss_pred hhhHH
Q 007383 256 LASLE 260 (605)
Q Consensus 256 ~~~~~ 260 (605)
++++.
T Consensus 223 p~ei~ 227 (243)
T COG1137 223 PEEIV 227 (243)
T ss_pred HHHHh
Confidence 99874
No 51
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-46 Score=374.09 Aligned_cols=210 Identities=27% Similarity=0.410 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|++++|+. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~l~~~~~~---------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 65 (216)
T TIGR00960 1 MIRFEQVSKAYPG---------------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQ 65 (216)
T ss_pred CeEEEEEEEEecC---------------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 4789999999831 1246999999999999999999999999999999999999999999999999
Q ss_pred eCCc---c---cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP---S---SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~---~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.. . .+++.++|++|++.+++.+||+||+.+.....+...++.+++++++++.+|+.+..++. +.+||||||
T Consensus 66 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~ 144 (216)
T TIGR00960 66 DLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL-PMQLSGGEQ 144 (216)
T ss_pred ehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCHHHH
Confidence 8642 1 24578999999999999999999999876543333344567789999999998877777 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.+++|++++|++|++
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999764 789999999997 47889999999999974
No 52
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-46 Score=378.15 Aligned_cols=219 Identities=33% Similarity=0.446 Sum_probs=190.5
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++||+++|. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 64 (241)
T cd03256 1 IEVENLSKTYP----------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD 64 (241)
T ss_pred CEEeeEEEecC----------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEe
Confidence 46899999882 12569999999999999999999999999999999999999999999999998
Q ss_pred CCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHcCCcccccccccC
Q 007383 104 IKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARL--------LVPKTSQIDTIITVLLTELRLAHLASTRLAH 169 (605)
Q Consensus 104 ~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~--------~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~ 169 (605)
+.. ...++.++|++|++.+++.+||+||+.+.... .+....+.++++.++++.+++.+..++.+ .
T Consensus 65 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (241)
T cd03256 65 INKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-D 143 (241)
T ss_pred ccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-c
Confidence 742 23466799999999999999999999875321 11112334567888999999987777774 9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+
T Consensus 144 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGR 222 (241)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999998656889999999998 5888999999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
+++.|+++++.
T Consensus 223 i~~~~~~~~~~ 233 (241)
T cd03256 223 IVFDGPPAELT 233 (241)
T ss_pred EEeecCHHHhh
Confidence 99999988763
No 53
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.5e-46 Score=389.79 Aligned_cols=218 Identities=28% Similarity=0.484 Sum_probs=197.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|++++| +.+.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~-----------------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~ 64 (301)
T TIGR03522 2 SIRVSSLTKLY-----------------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGE 64 (301)
T ss_pred EEEEEEEEEEE-----------------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 48899999998 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 103 PIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
++.. ...++.+||++|++.+++.+||.||+.+.+.+.+.+.++.+++++++++.+||.+..++.+ +.||||||||++
T Consensus 65 ~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LS~G~~qrv~ 143 (301)
T TIGR03522 65 DVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI-GQLSKGYRQRVG 143 (301)
T ss_pred EcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch-hhCCHHHHHHHH
Confidence 8743 2456789999999999999999999998876654444555677899999999998888885 999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||+||+++|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++|||+++|++|++++.|+.+++.
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999996 3 689999999998 589999999999999999999999875
Q ss_pred H
Q 007383 261 T 261 (605)
Q Consensus 261 ~ 261 (605)
.
T Consensus 221 ~ 221 (301)
T TIGR03522 221 A 221 (301)
T ss_pred H
Confidence 4
No 54
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.6e-46 Score=375.33 Aligned_cols=216 Identities=30% Similarity=0.477 Sum_probs=190.8
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|++
T Consensus 1 l~~~~l~~~~-----------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 63 (232)
T cd03218 1 LRAENLSKRY-----------------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD 63 (232)
T ss_pred CeEEEEEEEe-----------------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe
Confidence 4789999988 24569999999999999999999999999999999999999999999999998
Q ss_pred CCc---cc-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 104 IKP---SS-FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 104 ~~~---~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
+.. .. .++.++|++|++.+++.+||+||+.+..........+.+++++++++.+++.+..++.+ ++||||||||+
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl 142 (232)
T cd03218 64 ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKA-SSLSGGERRRV 142 (232)
T ss_pred cccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-hhCCHHHHHHH
Confidence 642 12 24569999999999999999999998754333233445567889999999988777774 99999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+++..|+.+++
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999999999976 4789999999998 58999999999999999999988765
No 55
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.4e-46 Score=376.51 Aligned_cols=216 Identities=30% Similarity=0.445 Sum_probs=190.2
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~-----------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 63 (236)
T cd03219 1 LEVRGLTKRFG-----------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED 63 (236)
T ss_pred CeeeeeEEEEC-----------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEE
Confidence 46889999882 3569999999999999999999999999999999999999999999999998
Q ss_pred CCcc---c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHcCCcccccccccC
Q 007383 104 IKPS---S-FRKLSAYVPQHDACIPSLTVYETFLFSARLLVP----------KTSQIDTIITVLLTELRLAHLASTRLAH 169 (605)
Q Consensus 104 ~~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~----------~~~~~~~~v~~~l~~l~L~~~~~~~~~~ 169 (605)
+... . .++.++|++|++.+++.+||+||+.+....... ...+..++++++++.+|+.+..++.+ +
T Consensus 64 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (236)
T cd03219 64 ITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-G 142 (236)
T ss_pred CCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-h
Confidence 7431 2 245699999999999999999999987543211 12344567889999999988777774 9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+
T Consensus 143 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQGR 220 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999976 5889999999998 5888999999999999
Q ss_pred EEEecChhhH
Q 007383 250 VVHHGTLASL 259 (605)
Q Consensus 250 iv~~g~~~~~ 259 (605)
++..|+++++
T Consensus 221 i~~~~~~~~~ 230 (236)
T cd03219 221 VIAEGTPDEV 230 (236)
T ss_pred EEeecCHHHh
Confidence 9999988765
No 56
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-46 Score=385.09 Aligned_cols=235 Identities=26% Similarity=0.404 Sum_probs=198.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||++.|+.. ....+.+|+|||+++++||++||+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~l~~~~l~~~y~~~------------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (287)
T PRK13637 2 SIKIENLTHIYMEG------------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGV 69 (287)
T ss_pred EEEEEEEEEECCCC------------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCE
Confidence 38999999998410 011256999999999999999999999999999999999999999999999999
Q ss_pred eCCc-----ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc--ccccccccCCCCHH
Q 007383 103 PIKP-----SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA--HLASTRLAHNLSGG 174 (605)
Q Consensus 103 ~~~~-----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~~LSgG 174 (605)
++.. ...++.+|||+|++. .+...||+||+.+.....+.+.++.+++++++++.+||. +..++. +++||||
T Consensus 70 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-~~~LSgG 148 (287)
T PRK13637 70 DITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS-PFELSGG 148 (287)
T ss_pred ECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCC-cccCCHH
Confidence 8753 245678999999863 333579999999876544445556677899999999996 566777 4999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||||++||+||+.+|++|||||||+|||+.++..+.++|++++++.|+|||++|||++ ++.++|||+++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999998766899999999997 478899999999999999999
Q ss_pred ChhhHHH---HHHhCCCCCC
Q 007383 255 TLASLET---FLLSSGFSVP 271 (605)
Q Consensus 255 ~~~~~~~---~~~~~g~~~p 271 (605)
+++++.+ .+...++..|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 228 TPREVFKEVETLESIGLAVP 247 (287)
T ss_pred CHHHHHhCHHHHHHcCCCCC
Confidence 9988642 2334455444
No 57
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-46 Score=386.18 Aligned_cols=239 Identities=29% Similarity=0.400 Sum_probs=201.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|+++|.
T Consensus 1 mi~~~~v~~~y~~~------------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 68 (288)
T PRK13643 1 MIKFEKVNYTYQPN------------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDI 68 (288)
T ss_pred CEEEEEEEEEeCCC------------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence 48999999999410 011246999999999999999999999999999999999999999999999999
Q ss_pred eCCc-------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 007383 103 PIKP-------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LS 172 (605)
++.. ...++.+|||+|++ .+++ .||.||+.|+....+.+.++.++++.++++.+||. +..++. ++.||
T Consensus 69 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~~LS 146 (288)
T PRK13643 69 VVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS-PFELS 146 (288)
T ss_pred ECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCC-cccCC
Confidence 8741 23567899999986 4555 69999999886544334556677899999999996 455666 59999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|++++
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~-~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMD-DVADYADYVYLLEKGHIIS 224 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999997 4788999999999999999
Q ss_pred ecChhhHH---HHHHhCCCCCCCCCChH
Q 007383 253 HGTLASLE---TFLLSSGFSVPPQLNAL 277 (605)
Q Consensus 253 ~g~~~~~~---~~~~~~g~~~p~~~n~a 277 (605)
.|+++++. +.+...|+.+|.....+
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 225 CGTPSDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred ECCHHHHHcCHHHHHHcCCCCChHHHHH
Confidence 99998873 34556777777543333
No 58
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.5e-46 Score=375.92 Aligned_cols=214 Identities=29% Similarity=0.436 Sum_probs=187.2
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC-----CCCccEEE
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART-----SPTNGTIL 98 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~-----~~~~G~I~ 98 (605)
|+++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.
T Consensus 1 i~~~~l~~~~~-----------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 63 (227)
T cd03260 1 IELRDLNVYYG-----------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL 63 (227)
T ss_pred CEEEEEEEEcC-----------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEE
Confidence 47899999882 356999999999999999999999999999999999999 89999999
Q ss_pred ECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcccccccc-cCCC
Q 007383 99 LNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAHLASTRL-AHNL 171 (605)
Q Consensus 99 ~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~~-~~~L 171 (605)
++|+++.. ..+++.++|++|++.++ .+||+||+.+.....+. ...+.+++++++++.+|+.+..++.+ +.+|
T Consensus 64 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 142 (227)
T cd03260 64 LDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGL 142 (227)
T ss_pred ECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccC
Confidence 99998642 23567899999999888 79999999987654322 22234677889999999987766664 4899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+++|++++|++|+++
T Consensus 143 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~-~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ-QAARVADRTAFLLNGRLV 219 (227)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHH-HHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999754 89999999998 578899999999999999
Q ss_pred EecChhh
Q 007383 252 HHGTLAS 258 (605)
Q Consensus 252 ~~g~~~~ 258 (605)
+.|++++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9998765
No 59
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.9e-46 Score=391.05 Aligned_cols=208 Identities=28% Similarity=0.432 Sum_probs=188.2
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc--ccccCceEEEcCCCCCCCCCCHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP--SSFRKLSAYVPQHDACIPSLTVY 129 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~ 129 (605)
.+.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.+||++|++.+++.+||+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4579999999999999999999999999999999999999999999999998742 24567899999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 007383 130 ETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNV 209 (605)
Q Consensus 130 e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i 209 (605)
||+.+.+...+.+..+.+++++++++.+||.+..++.+ ++|||||||||+||+||+.+|++|+|||||+|||+.++..+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV-GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch-hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 99998776544444455677899999999998888875 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHHH
Q 007383 210 MQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETF 262 (605)
Q Consensus 210 ~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~~ 262 (605)
.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.+.
T Consensus 164 ~~~l~~~~~~-g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 164 WDYIRALKEE-GVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999764 899999999998 58899999999999999999999887543
No 60
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-46 Score=369.66 Aligned_cols=210 Identities=29% Similarity=0.493 Sum_probs=186.8
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+ +++.+++|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~-----------------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (210)
T cd03269 1 LEVENVTKRF-----------------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKP 63 (210)
T ss_pred CEEEEEEEEE-----------------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCc
Confidence 4789999988 23569999999999999999999999999999999999999999999999988
Q ss_pred CCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHH
Q 007383 104 IKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGL 183 (605)
Q Consensus 104 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~ 183 (605)
+.. ..++.++|++|++.+++.+||+||+.+.....+....+.+++++++++.+|+.+..++.+ ++||||||||++||+
T Consensus 64 ~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl~la~ 141 (210)
T cd03269 64 LDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV-EELSKGNQQKVQFIA 141 (210)
T ss_pred hhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH-hhCCHHHHHHHHHHH
Confidence 753 456789999999999999999999998765433333455677899999999988777774 999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 184 SLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 184 aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 142 al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 142 AVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999764 789999999997 478899999999999998754
No 61
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.2e-46 Score=371.68 Aligned_cols=217 Identities=34% Similarity=0.512 Sum_probs=190.7
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.|.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 l~~~~l~~~~~~---------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 65 (220)
T cd03263 1 LQIRNLTKTYKK---------------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYS 65 (220)
T ss_pred CEEEeeEEEeCC---------------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe
Confidence 578999998831 12569999999999999999999999999999999999999999999999998
Q ss_pred CCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 104 IKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 104 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+.. ..+++.++|++|++.+++.+||+||+.+.....+.+..+.+++++++++.++|.+..++.+ .+||||||||++|
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~l 144 (220)
T cd03263 66 IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA-RTLSGGMKRKLSL 144 (220)
T ss_pred cccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh-hhCCHHHHHHHHH
Confidence 742 3456779999999999989999999998765433333445567889999999988777774 9999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
|++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|+++..|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999974 489999999998 47889999999999999999987754
No 62
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.2e-46 Score=378.48 Aligned_cols=219 Identities=34% Similarity=0.464 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~l~~~~~----------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (243)
T TIGR02315 1 MLEVENLSKVYP----------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGT 64 (243)
T ss_pred CeEEEeeeeecC----------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCE
Confidence 378999999882 1356999999999999999999999999999999999999999999999999
Q ss_pred eCCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHcCCccccccccc
Q 007383 103 PIKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARL--------LVPKTSQIDTIITVLLTELRLAHLASTRLA 168 (605)
Q Consensus 103 ~~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~--------~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~ 168 (605)
++.. ..+++.++|++|++.+++.+||+||+.+.... ......+.++++.++++.+|+.+..++.+
T Consensus 65 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 143 (243)
T TIGR02315 65 DITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA- 143 (243)
T ss_pred EhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-
Confidence 8642 12467799999999999999999999875321 01112344567889999999988777774
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G 222 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAG 222 (243)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999997655889999999998 478899999999999
Q ss_pred eEEEecChhhH
Q 007383 249 SVVHHGTLASL 259 (605)
Q Consensus 249 ~iv~~g~~~~~ 259 (605)
++++.|+++++
T Consensus 223 ~i~~~~~~~~~ 233 (243)
T TIGR02315 223 EIVFDGAPSEL 233 (243)
T ss_pred EEEecCCHHHh
Confidence 99999998775
No 63
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.3e-46 Score=371.04 Aligned_cols=216 Identities=27% Similarity=0.443 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++|+++.|.. +.....+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~v~~~~~~-------------~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 67 (218)
T cd03266 1 MITADALTKRFRD-------------VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF 67 (218)
T ss_pred CeEEEEEEEecCC-------------CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCE
Confidence 3789999999831 011126999999999999999999999999999999999999999999999999
Q ss_pred eCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 103 PIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
++.. ..+++.++|++|++.+++.+||+||+.+.......+..+..++++++++.+|+.+..++.+ ++||||||||++
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~ 146 (218)
T cd03266 68 DVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV-GGFSTGMRQKVA 146 (218)
T ss_pred EcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh-hhcCHHHHHHHH
Confidence 8752 3456789999999999999999999988655433334455678899999999988777774 999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 147 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999975 4889999999997 588899999999999998654
No 64
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.1e-46 Score=372.48 Aligned_cols=211 Identities=31% Similarity=0.447 Sum_probs=182.0
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++||+++|.. .++.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~~-------------~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~ 67 (218)
T cd03255 1 IELKNLSKTYGG-------------GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD 67 (218)
T ss_pred CeEeeeEEEecC-------------CCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEe
Confidence 478999998831 0012579999999999999999999999999999999999999999999999998
Q ss_pred CCcc------c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 104 IKPS------S-FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 104 ~~~~------~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
+... . .++.++|++|++.+++.+||+||+.+.....+....+.+++++++++.+|+.+..++. +++||||||
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~ 146 (218)
T cd03255 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY-PSELSGGQQ 146 (218)
T ss_pred hhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-hhhcCHHHH
Confidence 7421 1 3467999999999999999999999876543323334556788999999998877777 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999986458899999999974 55 9999999999974
No 65
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.5e-46 Score=395.48 Aligned_cols=208 Identities=26% Similarity=0.376 Sum_probs=189.9
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc---ccc----cCceEEEcCCCCCC
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSF----RKLSAYVPQHDACI 123 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~----~~~i~yv~Q~~~l~ 123 (605)
+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+++.. ..+ ++.++||+|++.++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 45679999999999999999999999999999999999999999999999998753 223 67899999999999
Q ss_pred CCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007383 124 PSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS 203 (605)
Q Consensus 124 ~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~ 203 (605)
+.+||+||+.+.....+.++++..+++.++++.+||++..++. +++|||||||||+|||||+.+|++|||||||+|||+
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~ 162 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP 162 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9999999999987665445556778899999999998888777 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 204 RSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 204 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 163 ~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 163 LIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999998766899999999998 588999999999999999999998863
No 66
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-46 Score=375.56 Aligned_cols=218 Identities=26% Similarity=0.447 Sum_probs=191.6
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|++++|. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 l~~~~l~~~~~----------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 64 (242)
T cd03295 1 IEFENVTKRYG----------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED 64 (242)
T ss_pred CEEEEEEEEeC----------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeE
Confidence 46899999883 11569999999999999999999999999999999999999999999999998
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc--cccccccCCCCHHHHHH
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH--LASTRLAHNLSGGERRR 178 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~~~~~LSgGerqR 178 (605)
+.. ...++.++|++|++.+++.+||+||+.+.........++..+++.++++.+++.+ ..++. +++||||||||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~LS~G~~qr 143 (242)
T cd03295 65 IREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRY-PHELSGGQQQR 143 (242)
T ss_pred cCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcC-hhhCCHHHHHH
Confidence 642 2456679999999999999999999998755433333445667889999999985 56666 49999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|++++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999999998655889999999997 5789999999999999999998876
Q ss_pred H
Q 007383 259 L 259 (605)
Q Consensus 259 ~ 259 (605)
+
T Consensus 223 ~ 223 (242)
T cd03295 223 I 223 (242)
T ss_pred H
Confidence 5
No 67
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-46 Score=383.87 Aligned_cols=233 Identities=27% Similarity=0.363 Sum_probs=197.1
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++||+++|+.. +...+.+|+|||+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 3 l~~~~l~~~y~~~------------~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 70 (290)
T PRK13634 3 ITFQKVEHRYQYK------------TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERV 70 (290)
T ss_pred EEEEEEEEEECCC------------CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 8999999999411 0112569999999999999999999999999999999999999999999999998
Q ss_pred CCc-------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCH
Q 007383 104 IKP-------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSG 173 (605)
Q Consensus 104 ~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSg 173 (605)
+.. ...++.+|||+|++ .++ ..||+||+.++....+.+.++.+++++++++.+||. +..++. +++|||
T Consensus 71 i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LSg 148 (290)
T PRK13634 71 ITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS-PFELSG 148 (290)
T ss_pred CccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCC-cccCCH
Confidence 741 23567799999986 455 469999999876543334455567889999999996 556666 599999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++ ++.+++||+++|++|++++.
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999998766899999999998 58899999999999999999
Q ss_pred cChhhHH---HHHHhCCCCCC
Q 007383 254 GTLASLE---TFLLSSGFSVP 271 (605)
Q Consensus 254 g~~~~~~---~~~~~~g~~~p 271 (605)
|+++++. ..+...+...|
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 228 GTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred CCHHHHhcCHHHHHHCCCCCC
Confidence 9998863 23444455544
No 68
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.3e-46 Score=380.08 Aligned_cols=219 Identities=24% Similarity=0.418 Sum_probs=193.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~-----------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 68 (269)
T PRK11831 6 NLVDMRGVSFTR-----------------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG 68 (269)
T ss_pred ceEEEeCeEEEE-----------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 369999999988 345799999999999999999999999999999999999999999999999
Q ss_pred eeCCcc------cccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCHH
Q 007383 102 SPIKPS------SFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174 (605)
Q Consensus 102 ~~~~~~------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG 174 (605)
+++... ..++.++|++|++.+++.+||.||+.+..... ..+.++.++++.++++.+|+.+..++. +++||||
T Consensus 69 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSgG 147 (269)
T PRK11831 69 ENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELSGG 147 (269)
T ss_pred EEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCHH
Confidence 987421 23567999999999999999999998864332 123334456788899999998877777 4999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|++++.|
T Consensus 148 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g 226 (269)
T PRK11831 148 MARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHG 226 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999998765889999999987 588999999999999999999
Q ss_pred ChhhH
Q 007383 255 TLASL 259 (605)
Q Consensus 255 ~~~~~ 259 (605)
+++++
T Consensus 227 ~~~~~ 231 (269)
T PRK11831 227 SAQAL 231 (269)
T ss_pred CHHHH
Confidence 98775
No 69
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.2e-46 Score=373.78 Aligned_cols=217 Identities=26% Similarity=0.417 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~l~~~~~-----------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 63 (240)
T PRK09493 1 MIEFKNVSKHFG-----------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL 63 (240)
T ss_pred CEEEEeEEEEEC-----------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 378999999882 356999999999999999999999999999999999999999999999999
Q ss_pred eCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.. ...++.++|++|++.+++.+||+||+.+.... .....++.++++.++++.+|+++..++.+ +.||||||
T Consensus 64 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LS~G~~ 142 (240)
T PRK09493 64 KVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP-SELSGGQQ 142 (240)
T ss_pred ECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh-hhcCHHHH
Confidence 8742 23466799999999999999999999886432 22233445667889999999987777774 99999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|++
T Consensus 143 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 143 QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999754 889999999998 47889999999999999999998
Q ss_pred hhH
Q 007383 257 ASL 259 (605)
Q Consensus 257 ~~~ 259 (605)
+++
T Consensus 221 ~~~ 223 (240)
T PRK09493 221 QVL 223 (240)
T ss_pred HHH
Confidence 775
No 70
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.3e-45 Score=371.43 Aligned_cols=218 Identities=31% Similarity=0.465 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 63 (236)
T TIGR03864 1 ALEVAGLSFAYG-----------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63 (236)
T ss_pred CEEEEeeEEEEC-----------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE
Confidence 478999999882 356999999999999999999999999999999999999999999999998
Q ss_pred eCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 103 PIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
++.. ...++.++|++|++.+++.+|++||+.+.....+...++..+.+.++++.+|+.+..++.+ .+||||||||++
T Consensus 64 ~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LS~G~~qrl~ 142 (236)
T TIGR03864 64 DLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKV-RELNGGHRRRVE 142 (236)
T ss_pred EcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-hhCCHHHHHHHH
Confidence 8642 2233579999999988889999999988754433233445567889999999988777774 999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|+++..|+++++.
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999986558899999999984 55 59999999999999999987764
No 71
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=379.24 Aligned_cols=230 Identities=26% Similarity=0.369 Sum_probs=195.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|+++.|+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~l~~~~l~~~~~----------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 67 (274)
T PRK13647 4 IIEVEDLHFRYK----------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR 67 (274)
T ss_pred eEEEEEEEEEeC----------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCE
Confidence 589999999983 2346999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
++.. ...++.+||++|++. .++..||.||+.+.....+....+.+++++++++.+||.+..++. +.+||||||||
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSgG~~qr 146 (274)
T PRK13647 68 EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP-PYHLSYGQKKR 146 (274)
T ss_pred ECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-hhhCCHHHHHH
Confidence 8742 234567999999963 445689999999875433333445566789999999998887777 59999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++||+++ ++.+.||++++|++|++++.|++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865 899999999998 4788999999999999999999876
Q ss_pred HH--HHHHhCCCCCC
Q 007383 259 LE--TFLLSSGFSVP 271 (605)
Q Consensus 259 ~~--~~~~~~g~~~p 271 (605)
+. +.+...+...|
T Consensus 225 ~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 225 LTDEDIVEQAGLRLP 239 (274)
T ss_pred hcCHHHHHHcCCCCC
Confidence 52 23334444433
No 72
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=380.75 Aligned_cols=221 Identities=23% Similarity=0.352 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|+++.|+. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~--------------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (279)
T PRK13650 4 IIEVKNLTFKYKE--------------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69 (279)
T ss_pred eEEEEeEEEEcCC--------------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 6899999999831 12246999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
++.. ...++.+||++|++ ..++..||+||+.+.....+.+.++.+++++++++.+||.+..++. +.+||||||||
T Consensus 70 ~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSgGq~qr 148 (279)
T PRK13650 70 LLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-PARLSGGQKQR 148 (279)
T ss_pred ECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCCHHHHHH
Confidence 8742 24567899999997 3667789999999875443334455667889999999999887777 49999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++ ..+|++++|++|+++..|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999998766899999999997 45 5799999999999999999987
Q ss_pred HH
Q 007383 259 LE 260 (605)
Q Consensus 259 ~~ 260 (605)
+.
T Consensus 227 ~~ 228 (279)
T PRK13650 227 LF 228 (279)
T ss_pred HH
Confidence 64
No 73
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=369.92 Aligned_cols=218 Identities=28% Similarity=0.459 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|+. +...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~-------------~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 71 (233)
T PRK11629 5 LLQCDNLCKRYQE-------------GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQ 71 (233)
T ss_pred eEEEEeEEEEcCC-------------CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 5999999999831 111256999999999999999999999999999999999999999999999999
Q ss_pred eCCcc------cc-cCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKPS------SF-RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~~------~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++... .. ++.++|++|++.+++.+|++||+.+.........++.+++++++++.+|+.+..++. +.+|||||
T Consensus 72 ~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSgG~ 150 (233)
T PRK11629 72 PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-PSELSGGE 150 (233)
T ss_pred EcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCHHH
Confidence 87421 12 257999999999999999999999875432223344566789999999998877777 49999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|++|+++..++
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999976568999999999974 555 58999999999998876
Q ss_pred h
Q 007383 256 L 256 (605)
Q Consensus 256 ~ 256 (605)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 4
No 74
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1e-45 Score=396.61 Aligned_cols=217 Identities=27% Similarity=0.388 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.| +.+.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 3 ~L~~~nls~~y-----------------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~ 65 (402)
T PRK09536 3 MIDVSDLSVEF-----------------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGD 65 (402)
T ss_pred eEEEeeEEEEE-----------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE
Confidence 68999999998 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL----VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++.. .+.++.+|||+|++.+++.+||+||+.++...+ ....++.+++++++++.+|+.+..++.+ ++|||||
T Consensus 66 ~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-~~LSgGe 144 (402)
T PRK09536 66 DVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-TSLSGGE 144 (402)
T ss_pred EcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-hhCCHHH
Confidence 8742 456778999999999988999999999864321 1112345678899999999998888875 9999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
|||++|||||+++|++|||||||+|||+.++.+++++|+++++ .|+|||+++|+++ ++.++|||+++|++|++++.|+
T Consensus 145 rQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999986 4789999999998 5889999999999999999999
Q ss_pred hhhH
Q 007383 256 LASL 259 (605)
Q Consensus 256 ~~~~ 259 (605)
++++
T Consensus 223 ~~ev 226 (402)
T PRK09536 223 PADV 226 (402)
T ss_pred HHHH
Confidence 9875
No 75
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-45 Score=374.86 Aligned_cols=217 Identities=28% Similarity=0.442 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (250)
T PRK11264 3 AIEVKNLVKKFH-----------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDI 65 (250)
T ss_pred cEEEeceEEEEC-----------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 589999999982 356999999999999999999999999999999999999999999999998
Q ss_pred eCCc-----------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcccccccccCC
Q 007383 103 PIKP-----------SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLASTRLAHN 170 (605)
Q Consensus 103 ~~~~-----------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~ 170 (605)
++.. ...++.++|++|++.+++.+||+||+.+.... .....++..+++.++++.+|+.+..++. +++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~ 144 (250)
T PRK11264 66 TIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSY-PRR 144 (250)
T ss_pred EccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC-hhh
Confidence 8642 23456799999999999889999999886432 2223344556788999999998777777 499
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++
T Consensus 145 LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i 222 (250)
T PRK11264 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMS-FARDVADRAIFMDQGRI 222 (250)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999764 789999999997 57889999999999999
Q ss_pred EEecChhhH
Q 007383 251 VHHGTLASL 259 (605)
Q Consensus 251 v~~g~~~~~ 259 (605)
++.|+++++
T Consensus 223 ~~~~~~~~~ 231 (250)
T PRK11264 223 VEQGPAKAL 231 (250)
T ss_pred EEeCCHHHH
Confidence 999998776
No 76
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-46 Score=359.15 Aligned_cols=219 Identities=30% Similarity=0.416 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||+..| +..++|++||+++++||+++|+|+||||||||||+|+|+.++.+|+|.++|
T Consensus 2 ~mL~v~~l~~~Y-----------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G 64 (237)
T COG0410 2 PMLEVENLSAGY-----------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64 (237)
T ss_pred CceeEEeEeecc-----------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECC
Confidence 468999999988 568899999999999999999999999999999999999999999999999
Q ss_pred eeCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-CcccccccccCCCCHHHH
Q 007383 102 SPIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELR-LAHLASTRLAHNLSGGER 176 (605)
Q Consensus 102 ~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~~~~~LSgGer 176 (605)
++++. +..|..++||||...+|+.|||+|||..++...+. ++..+..++++.+.+- |.+..+++ .+.||||||
T Consensus 65 ~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~-aG~LSGGEQ 142 (237)
T COG0410 65 EDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQR-AGTLSGGEQ 142 (237)
T ss_pred eecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCc-ccCCChHHH
Confidence 99863 34667899999999999999999999988655322 1122222677777764 55556666 599999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
|.++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++.|.||+.+.++... +.+++||.++|.+|++++.|+.
T Consensus 143 QMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Griv~~G~~ 221 (237)
T COG0410 143 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLSGTA 221 (237)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999999998778899999999885 8999999999999999999999
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
+++.
T Consensus 222 ~eL~ 225 (237)
T COG0410 222 AELL 225 (237)
T ss_pred HHHh
Confidence 9874
No 77
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.1e-45 Score=368.21 Aligned_cols=214 Identities=29% Similarity=0.424 Sum_probs=186.9
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|++++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 63 (222)
T cd03224 1 LEVENLNAGYG-----------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRD 63 (222)
T ss_pred CEEeeEEeecC-----------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 47899999882 3569999999999999999999999999999999999999999999999988
Q ss_pred CCcc---c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHc-CCcccccccccCCCCHHHHHH
Q 007383 104 IKPS---S-FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTEL-RLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 104 ~~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~~~~~LSgGerqR 178 (605)
+... . .++.++|++|++.+++.+|++||+.+...... ..+.+++++++++.+ ++.+..++.+ ++||||||||
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~-~~LS~G~~qr 140 (222)
T cd03224 64 ITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLA-GTLSGGEQQM 140 (222)
T ss_pred cCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCch-hhCCHHHHHH
Confidence 7421 2 35679999999999999999999998754432 223455677788888 5776677774 9999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+++..|++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999976 5789999999997 5889999999999999999998876
Q ss_pred H
Q 007383 259 L 259 (605)
Q Consensus 259 ~ 259 (605)
+
T Consensus 219 ~ 219 (222)
T cd03224 219 L 219 (222)
T ss_pred H
Confidence 5
No 78
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-45 Score=384.32 Aligned_cols=234 Identities=26% Similarity=0.398 Sum_probs=197.2
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++|+++.|+.. ....+.+|+|+|+++++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 20 ~~l~~~nl~~~y~~~------------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g 87 (320)
T PRK13631 20 IILRVKNLYCVFDEK------------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGD 87 (320)
T ss_pred ceEEEEeEEEEeCCC------------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 469999999999411 01124699999999999999999999999999999999999999999999999
Q ss_pred eeCCc-------------------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc
Q 007383 102 SPIKP-------------------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA 160 (605)
Q Consensus 102 ~~~~~-------------------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~ 160 (605)
+++.. ..+++.+|||+|++ .+++ .||+||+.++......+.++..++++++++.+||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 88 IYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred EEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 87632 13567899999986 4665 59999998875433334455567888999999996
Q ss_pred -ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcC
Q 007383 161 -HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTI 239 (605)
Q Consensus 161 -~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 239 (605)
+..++. +.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.+
T Consensus 167 ~~~~~~~-~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~-~~~~~a 243 (320)
T PRK13631 167 DSYLERS-PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTME-HVLEVA 243 (320)
T ss_pred hhHhcCC-cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhC
Confidence 566666 499999999999999999999999999999999999999999999999975 4899999999997 478899
Q ss_pred CeEEEEeCCeEEEecChhhHH---HHHHhCCCCCC
Q 007383 240 DRILLLSKGSVVHHGTLASLE---TFLLSSGFSVP 271 (605)
Q Consensus 240 d~v~~l~~G~iv~~g~~~~~~---~~~~~~g~~~p 271 (605)
|++++|++|+++..|+++++. ..+...+...|
T Consensus 244 dri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 244 DEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred CEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999998763 33445555554
No 79
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.1e-45 Score=364.73 Aligned_cols=207 Identities=28% Similarity=0.431 Sum_probs=183.8
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 l~~~~l~~~~~-----------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 63 (208)
T cd03268 1 LKTNDLTKTYG-----------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS 63 (208)
T ss_pred CEEEEEEEEEC-----------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCc
Confidence 47899999882 3579999999999999999999999999999999999999999999999987
Q ss_pred CCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 104 IKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 104 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
+.. ...++.++|++|++.+++.+||+||+.+....... .+++++++++.+++.+..++.+ ++|||||||||+||
T Consensus 64 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~la 138 (208)
T cd03268 64 YQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKV-KGFSLGMKQRLGIA 138 (208)
T ss_pred ccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhH-hhCCHHHHHHHHHH
Confidence 642 23456799999999999999999999887543221 2456788999999988777774 99999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.+++|++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 5789999999998 478899999999999998764
No 80
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-46 Score=361.99 Aligned_cols=221 Identities=25% Similarity=0.441 Sum_probs=208.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|++++|++++ +.+.+++|+||++++|++.+++|||||||||.+++|.|+++|++|+|.++|.
T Consensus 2 ~L~ie~vtK~F-----------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~ 64 (300)
T COG4152 2 ALEIEGVTKSF-----------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGG 64 (300)
T ss_pred ceEEecchhcc-----------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCc
Confidence 58999999998 6788999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
+++ ...+.+|||+|.+..+++.+||.|.|.|.+.+.+.+.++.+++++.+|+++++.....+++ .+||.|++|++.+.
T Consensus 65 ~~~-~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kI-k~LSKGnqQKIQfi 142 (300)
T COG4152 65 PLS-QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI-KELSKGNQQKIQFI 142 (300)
T ss_pred chh-hhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchH-HHhhhhhhHHHHHH
Confidence 985 4556789999999999999999999999999988888999999999999999998887775 99999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHHH
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETF 262 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~~ 262 (605)
.+++++|++++||||+|||||.+.+.+-+.+.++++ .|.|||+++|.++ .+.++||++++|++|+.|.+|+.++++..
T Consensus 143 saviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 143 SAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred HHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999999999999986 5899999999998 59999999999999999999999999775
Q ss_pred HH
Q 007383 263 LL 264 (605)
Q Consensus 263 ~~ 264 (605)
+.
T Consensus 221 ~G 222 (300)
T COG4152 221 FG 222 (300)
T ss_pred cC
Confidence 53
No 81
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3e-45 Score=385.44 Aligned_cols=233 Identities=21% Similarity=0.304 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++||+++|....... ++ ....+...+++|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~--~~--~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G 82 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQ--WF--WQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLG 82 (331)
T ss_pred ceEEEeCeEEEECCCCccc--cc--cccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECC
Confidence 4699999999995311000 00 0011235799999999999999999999999999999999999999999999999
Q ss_pred eeCCc------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHHcCCc-ccccccccCC
Q 007383 102 SPIKP------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLL--VPKTSQIDTIITVLLTELRLA-HLASTRLAHN 170 (605)
Q Consensus 102 ~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~ 170 (605)
+++.. ..+++.++||+|++ .+++.+||.||+.+..... ..++++.++++.++++.++|. +..++. +++
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-p~~ 161 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY-PHE 161 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC-ccc
Confidence 98742 12467899999997 5888999999999876543 234456677888999999995 455666 599
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++.|.|||++|||++ .+.+++|++++|++|++
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHA 240 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998766899999999998 47889999999999999
Q ss_pred EEecChhhHH
Q 007383 251 VHHGTLASLE 260 (605)
Q Consensus 251 v~~g~~~~~~ 260 (605)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (331)
T PRK15079 241 VELGTYDEVY 250 (331)
T ss_pred EEEcCHHHHH
Confidence 9999988763
No 82
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-45 Score=382.59 Aligned_cols=234 Identities=23% Similarity=0.376 Sum_probs=196.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||++.|+.+ ......+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~i~~~~l~~~y~~~------------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~ 69 (305)
T PRK13651 2 QIKVKNIVKIFNKK------------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFK 69 (305)
T ss_pred EEEEEEEEEEECCC------------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEece
Confidence 48999999999421 011246999999999999999999999999999999999999999999999987
Q ss_pred eCC---------------------------cccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 007383 103 PIK---------------------------PSSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLL 154 (605)
Q Consensus 103 ~~~---------------------------~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l 154 (605)
+.. ...+++.+|||+|++ ..+...||+||+.|+....+.+.++.++++++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l 149 (305)
T PRK13651 70 DEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYI 149 (305)
T ss_pred ecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHH
Confidence 541 123467799999985 2333579999999876544445556677899999
Q ss_pred HHcCCc-ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCh
Q 007383 155 TELRLA-HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSF 233 (605)
Q Consensus 155 ~~l~L~-~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 233 (605)
+.+||. +..++. +.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++
T Consensus 150 ~~~gL~~~~~~~~-~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~- 226 (305)
T PRK13651 150 ELVGLDESYLQRS-PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLD- 226 (305)
T ss_pred HHcCCChhhhhCC-hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHH-
Confidence 999996 567766 599999999999999999999999999999999999999999999999975 4899999999997
Q ss_pred HHHhcCCeEEEEeCCeEEEecChhhHH---HHHHhCCCCCC
Q 007383 234 KILSTIDRILLLSKGSVVHHGTLASLE---TFLLSSGFSVP 271 (605)
Q Consensus 234 ~i~~~~d~v~~l~~G~iv~~g~~~~~~---~~~~~~g~~~p 271 (605)
.+.+.+||+++|++|++++.|+++++. +.+...+...|
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 488999999999999999999998863 23334454434
No 83
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=373.10 Aligned_cols=214 Identities=27% Similarity=0.366 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ml~~~~l~~~~~-----------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 63 (255)
T PRK11248 1 MLQISHLYADYG-----------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK 63 (255)
T ss_pred CEEEEEEEEEeC-----------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 478999999882 356999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
++.. ..+.++|++|++.+++.+||.||+.+.....+....+.++++.++++.+|+.+..++. +.+||||||||++||
T Consensus 64 ~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSgGq~qrl~la 140 (255)
T PRK11248 64 PVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRY-IWQLSGGQRQRVGIA 140 (255)
T ss_pred ECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCC-hhhCCHHHHHHHHHH
Confidence 8742 2346899999999999899999998865433323344566789999999998877776 499999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe--CCeEEEecChh
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS--KGSVVHHGTLA 257 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~--~G~iv~~g~~~ 257 (605)
++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|+ +|+++..++.+
T Consensus 141 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 141 RALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999999996655899999999998 5889999999998 59999887653
No 84
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-45 Score=377.96 Aligned_cols=231 Identities=28% Similarity=0.416 Sum_probs=198.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~ 68 (283)
T PRK13636 5 ILKVEELNYNYS----------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK 68 (283)
T ss_pred eEEEEeEEEEeC----------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCE
Confidence 699999999983 2356999999999999999999999999999999999999999999999999
Q ss_pred eCCc-----ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP-----SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~-----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.. ..+++.+||++|++. .+...||+||+.+.......+.++.+++++++++.+||.+..++.. +.||||||
T Consensus 69 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~LS~G~~ 147 (283)
T PRK13636 69 PIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT-HCLSFGQK 147 (283)
T ss_pred ECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc-ccCCHHHH
Confidence 8731 245678999999973 3345799999998754333344455677899999999998888774 99999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|++
T Consensus 148 qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~ 226 (283)
T PRK13636 148 KRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNP 226 (283)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999998755899999999998 47789999999999999999999
Q ss_pred hhHHH---HHHhCCCCCC
Q 007383 257 ASLET---FLLSSGFSVP 271 (605)
Q Consensus 257 ~~~~~---~~~~~g~~~p 271 (605)
+++.. .....+.++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 227 KEVFAEKEMLRKVNLRLP 244 (283)
T ss_pred HHHhcCHHHHHHcCCCCC
Confidence 88642 3334454444
No 85
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.7e-45 Score=365.00 Aligned_cols=208 Identities=29% Similarity=0.436 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~l~~~~~----------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 64 (214)
T TIGR02673 1 MIEFHNVSKAYP----------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGE 64 (214)
T ss_pred CEEEEeeeEEeC----------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 378999999882 1356999999999999999999999999999999999999999999999999
Q ss_pred eCCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.. ..+++.++|++|++.+++.+||.||+.+.....+...++.+++++++++.+++.+..++. +.+||||||
T Consensus 65 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~ 143 (214)
T TIGR02673 65 DVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-PEQLSGGEQ 143 (214)
T ss_pred EcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCHHHH
Confidence 8742 124678999999999999999999999875543223344567788999999998777766 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+
T Consensus 144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999999764 789999999997 5888999999999885
No 86
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-45 Score=372.64 Aligned_cols=219 Identities=35% Similarity=0.496 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~-----------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~ 64 (258)
T PRK13548 2 MLEARNLSVRLG-----------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR 64 (258)
T ss_pred eEEEEeEEEEeC-----------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 589999999982 356999999999999999999999999999999999999999999999998
Q ss_pred eCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
++.. ...++.++|++|++.+++.+||+||+.+.........++.+++++++++.+|+.+..++.+ .+||||||||+
T Consensus 65 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgGe~qrv 143 (258)
T PRK13548 65 PLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY-PQLSGGEQQRV 143 (258)
T ss_pred EcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc-ccCCHHHHHHH
Confidence 8642 2345679999999988888999999998653322222334567889999999988777774 99999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 180 SIGLSLL------HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 180 ~ia~aL~------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999997445889999999997 47889999999999999999
Q ss_pred cChhhHH
Q 007383 254 GTLASLE 260 (605)
Q Consensus 254 g~~~~~~ 260 (605)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9987763
No 87
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2e-45 Score=364.30 Aligned_cols=208 Identities=28% Similarity=0.461 Sum_probs=182.9
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.|+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~----------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 64 (214)
T cd03292 1 IEFINVTKTYP----------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD 64 (214)
T ss_pred CEEEEEEEEeC----------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 46899999883 12569999999999999999999999999999999999999999999999998
Q ss_pred CCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 104 IKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 104 ~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
+.. ...++.++|++|++.+++.+|++||+.+.........++.+++++++++.+|+++..++. +++|||||||
T Consensus 65 i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~q 143 (214)
T cd03292 65 VSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-PAELSGGEQQ 143 (214)
T ss_pred cccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhcCHHHHH
Confidence 742 124567999999999999999999999875543333344566788999999998877777 4999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999764 789999999997 47789999999999874
No 88
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-45 Score=378.92 Aligned_cols=223 Identities=27% Similarity=0.418 Sum_probs=192.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||++.|..+ ....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~l~~~~l~~~y~~~------------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~ 69 (286)
T PRK13646 2 TIRFDNVSYTYQKG------------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDI 69 (286)
T ss_pred EEEEEEEEEEECCC------------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 48999999999410 011246999999999999999999999999999999999999999999999999
Q ss_pred eCCc-------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 007383 103 PIKP-------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LS 172 (605)
++.. ..+++.+|||+|++ .+++ .||.||+.+.....+.+.++.+++++++++.+||. +..++. +.+||
T Consensus 70 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS 147 (286)
T PRK13646 70 TITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS-PFQMS 147 (286)
T ss_pred ECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCC
Confidence 8742 23567899999986 4555 59999999875433334455667889999999996 566666 59999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++||++|+.+|++|+|||||+|||+.++..+.++|++++++.|+|||++||+++ ++.+++|++++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999998666899999999998 4788999999999999999
Q ss_pred ecChhhHH
Q 007383 253 HGTLASLE 260 (605)
Q Consensus 253 ~g~~~~~~ 260 (605)
.|+++++.
T Consensus 227 ~g~~~~~~ 234 (286)
T PRK13646 227 QTSPKELF 234 (286)
T ss_pred ECCHHHHH
Confidence 99998763
No 89
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-45 Score=377.39 Aligned_cols=208 Identities=29% Similarity=0.377 Sum_probs=184.1
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc---cc----ccCceEEEcCCCCCC
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SS----FRKLSAYVPQHDACI 123 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~---~~----~~~~i~yv~Q~~~l~ 123 (605)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .. .++.++|++|++.++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 45679999999999999999999999999999999999999999999999998642 11 135799999999999
Q ss_pred CCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007383 124 PSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS 203 (605)
Q Consensus 124 ~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~ 203 (605)
+.+||+||+.+..........+.+++++++++.+||.+..++.+ ++||||||||++||+||+.+|++|||||||+|||+
T Consensus 115 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~ 193 (269)
T cd03294 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-DELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193 (269)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 99999999998754432233445567889999999988777774 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 204 RSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 204 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 194 ~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 194 LIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999997655889999999997 578999999999999999999987763
No 90
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-45 Score=391.74 Aligned_cols=237 Identities=27% Similarity=0.346 Sum_probs=199.6
Q ss_pred ceEEEEeEEEEEecCCCCc----cc---cccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 007383 22 YKLTGSSISYIKSNNSIIP----SF---IFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTN 94 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~----~~---~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~ 94 (605)
..|+++||++.|....... .. .-.-.+..+...+|+|+||++++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 3699999999885432110 00 0000112244568999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCc---cc----ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccc
Q 007383 95 GTILLNSSPIKP---SS----FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL 167 (605)
Q Consensus 95 G~I~~~g~~~~~---~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~ 167 (605)
|+|.++|+++.. .. .++.++||+|++.+++.+||+||+.+.....+.+.++.++++.++++.+||.+..++.
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~- 161 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY- 161 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-
Confidence 999999998742 11 2357999999999999999999999986654334445567889999999998887777
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~ 240 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN 240 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999997666899999999998 58899999999999
Q ss_pred CeEEEecChhhHH
Q 007383 248 GSVVHHGTLASLE 260 (605)
Q Consensus 248 G~iv~~g~~~~~~ 260 (605)
|+++..|+++++.
T Consensus 241 G~i~~~g~~~~l~ 253 (400)
T PRK10070 241 GEVVQVGTPDEIL 253 (400)
T ss_pred CEEEecCCHHHHH
Confidence 9999999988763
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.2e-45 Score=370.18 Aligned_cols=215 Identities=27% Similarity=0.433 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-----ccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT-----NGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~-----~G~I 97 (605)
+|+++||+++|. .+.+++|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|
T Consensus 1 ~l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i 63 (247)
T TIGR00972 1 AIEIENLNLFYG-----------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV 63 (247)
T ss_pred CEEEEEEEEEEC-----------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE
Confidence 378999999982 346999999999999999999999999999999999999988 9999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCc----ccccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLA----HLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~----~~~~~~~ 167 (605)
.++|+++.. ...++.++|++|++.+++ +|++||+.+.....+ .+.++.+++++++++.+|+. +..++.
T Consensus 64 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 141 (247)
T TIGR00972 64 LFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDS- 141 (247)
T ss_pred EECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-
Confidence 999998742 234678999999998888 999999998765432 23345567789999999997 556666
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++
T Consensus 142 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999999975 379999999998 58899999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (247)
T TIGR00972 219 GELVEYGPTEQI 230 (247)
T ss_pred CEEEEeCCHHHH
Confidence 999999998776
No 92
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-45 Score=363.27 Aligned_cols=209 Identities=33% Similarity=0.516 Sum_probs=184.3
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.+. .+.+|+|+|+++++| +++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 i~~~~~~~~~~-----------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 62 (211)
T cd03264 1 LQLENLTKRYG-----------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQD 62 (211)
T ss_pred CEEEEEEEEEC-----------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCc
Confidence 47899999882 356999999999999 999999999999999999999999999999999987
Q ss_pred CCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 104 IKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 104 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+.. ..+++.++|++|++.+++.+||+||+.+.........++.+++++++++.+|+.+..++. +.+||||||||++|
T Consensus 63 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~l 141 (211)
T cd03264 63 VLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKK-IGSLSGGMRRRVGI 141 (211)
T ss_pred cccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCc-hhhCCHHHHHHHHH
Confidence 642 235678999999999999999999999875543323334566788999999998877777 49999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+++|++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999974 489999999998 477899999999999998764
No 93
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.4e-45 Score=363.73 Aligned_cols=212 Identities=29% Similarity=0.461 Sum_probs=182.2
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.|.. +.+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 2 l~~~~v~~~~~~-------------~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 68 (221)
T TIGR02211 2 LKCENLGKRYQE-------------GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQS 68 (221)
T ss_pred EEEEeeeEEccC-------------CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 789999999831 1123569999999999999999999999999999999999999999999999998
Q ss_pred CCc---cc---cc-CceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 104 IKP---SS---FR-KLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 104 ~~~---~~---~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
+.. .. ++ +.++|++|++.+++.+||+||+.+..........+..+++.++++.+|+.+..++. ++.||||||
T Consensus 69 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~ 147 (221)
T TIGR02211 69 LSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-PSELSGGER 147 (221)
T ss_pred hhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCHHHH
Confidence 742 11 23 57999999999998999999999865432222334456788999999998877777 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ .+ +.+|++++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999998655789999999997 35 457999999999875
No 94
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=5.1e-45 Score=370.68 Aligned_cols=217 Identities=26% Similarity=0.355 Sum_probs=191.2
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|++
T Consensus 1 i~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (252)
T TIGR03005 1 VRFSDVTKRFG-----------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQ 63 (252)
T ss_pred CEEEEEEEEeC-----------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 47899999882 3569999999999999999999999999999999999999999999999987
Q ss_pred CCc----------------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCccccccc
Q 007383 104 IKP----------------SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLASTR 166 (605)
Q Consensus 104 ~~~----------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~ 166 (605)
+.. ..+++.++|++|++.+++..|+.||+.++... ......+.++.+.++++.+|+.+..++.
T Consensus 64 i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 64 LYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 632 13467899999999999999999999886432 2223344556788999999998877777
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|+
T Consensus 144 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~ 221 (252)
T TIGR03005 144 -PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFD 221 (252)
T ss_pred -hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 49999999999999999999999999999999999999999999999998755899999999998 5788999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|++++.|+.+++
T Consensus 222 ~G~i~~~g~~~~~ 234 (252)
T TIGR03005 222 KGRIVEQGKPDEI 234 (252)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998766
No 95
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-45 Score=368.54 Aligned_cols=217 Identities=27% Similarity=0.480 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~~~-----------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (241)
T PRK10895 3 TLTAKNLAKAYK-----------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDE 65 (241)
T ss_pred eEEEeCcEEEeC-----------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 589999999882 357999999999999999999999999999999999999999999999999
Q ss_pred eCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 103 PIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
++.. ...++.++|++|++.+++.+||.||+.+...... ...++.+++++++++.+|+.+..++.. ++|||||||
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~q 144 (241)
T PRK10895 66 DISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-QSLSGGERR 144 (241)
T ss_pred ECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch-hhCCHHHHH
Confidence 8742 1245679999999999999999999988654321 223345667889999999988777774 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|++|++++.|+++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~ 222 (241)
T PRK10895 145 RVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPT 222 (241)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHH
Confidence 99999999999999999999999999999999999999975 4889999999997 588999999999999999999987
Q ss_pred hH
Q 007383 258 SL 259 (605)
Q Consensus 258 ~~ 259 (605)
++
T Consensus 223 ~~ 224 (241)
T PRK10895 223 EI 224 (241)
T ss_pred HH
Confidence 76
No 96
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.6e-45 Score=362.81 Aligned_cols=204 Identities=34% Similarity=0.498 Sum_probs=177.2
Q ss_pred EEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 25 TGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 25 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
+++|++++|. +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++
T Consensus 1 ~~~~l~~~~~----------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 64 (205)
T cd03226 1 RIENISFSYK----------------KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI 64 (205)
T ss_pred CcccEEEEeC----------------CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh
Confidence 3678888882 115699999999999999999999999999999999999999999999999987
Q ss_pred CcccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHH
Q 007383 105 KPSSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGL 183 (605)
Q Consensus 105 ~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~ 183 (605)
.....++.++|++|++. .+..+||+||+.+...... +.+++++++++.+|+.+..++. +++||||||||++|||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~lar 139 (205)
T cd03226 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERH-PLSLSGGQKQRLAIAA 139 (205)
T ss_pred hhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCC-chhCCHHHHHHHHHHH
Confidence 54445678999999974 3346799999987653321 1235688999999998887777 4999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 184 SLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 184 aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+++
T Consensus 140 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 140 ALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999999764 889999999998 478899999999999874
No 97
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.2e-45 Score=365.34 Aligned_cols=217 Identities=27% Similarity=0.382 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|.. +.....+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~v~~~~~~-------------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 67 (228)
T cd03257 1 LLEVKNLSVSFPT-------------GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGK 67 (228)
T ss_pred CeEEEeeeEeccC-------------CCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 3789999998831 001136999999999999999999999999999999999999999999999999
Q ss_pred eCCc------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCC-ChhHHHHH-HHHHHHHcCCc-ccccccccCCC
Q 007383 103 PIKP------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVP-KTSQIDTI-ITVLLTELRLA-HLASTRLAHNL 171 (605)
Q Consensus 103 ~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~-v~~~l~~l~L~-~~~~~~~~~~L 171 (605)
++.. ..+++.++|++|++ .+++.+||+||+.+....... ..++..+. ++++++.+++. +..++. +.+|
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~L 146 (228)
T cd03257 68 DLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRY-PHEL 146 (228)
T ss_pred EccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCC-chhc
Confidence 8742 23567899999998 467789999999887544322 12222222 35889999995 566666 4999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++
T Consensus 147 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIV 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999998755789999999997 577899999999999998
Q ss_pred Eec
Q 007383 252 HHG 254 (605)
Q Consensus 252 ~~g 254 (605)
..|
T Consensus 226 ~~g 228 (228)
T cd03257 226 EEG 228 (228)
T ss_pred ecC
Confidence 654
No 98
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.1e-45 Score=371.19 Aligned_cols=217 Identities=27% Similarity=0.397 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~-----------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 67 (257)
T PRK10619 5 KLNVIDLHKRYG-----------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQ 67 (257)
T ss_pred cEEEeeeEEEEC-----------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 489999999982 467999999999999999999999999999999999999999999999998
Q ss_pred eCCc----------------ccccCceEEEcCCCCCCCCCCHHHHHHHHHh-cCCCChhHHHHHHHHHHHHcCCcccc-c
Q 007383 103 PIKP----------------SSFRKLSAYVPQHDACIPSLTVYETFLFSAR-LLVPKTSQIDTIITVLLTELRLAHLA-S 164 (605)
Q Consensus 103 ~~~~----------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 164 (605)
++.. ..+++.++|++|++.+++.+||+||+.++.. .......+.++++.++++.+|+.+.. +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 68 TINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred EcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 7631 1345679999999999999999999987543 22233445567788999999998754 5
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 165 TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 165 ~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
+. +++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++
T Consensus 148 ~~-~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~-~~~~~~d~i~~ 224 (257)
T PRK10619 148 KY-PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG-FARHVSSHVIF 224 (257)
T ss_pred CC-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEE
Confidence 55 5999999999999999999999999999999999999999999999999764 899999999998 57889999999
Q ss_pred EeCCeEEEecChhhH
Q 007383 245 LSKGSVVHHGTLASL 259 (605)
Q Consensus 245 l~~G~iv~~g~~~~~ 259 (605)
|++|++++.|+++++
T Consensus 225 l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 225 LHQGKIEEEGAPEQL 239 (257)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999998775
No 99
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-45 Score=374.24 Aligned_cols=220 Identities=27% Similarity=0.415 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~---------------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~ 69 (279)
T PRK13635 5 IIRVEHISFRYPD---------------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM 69 (279)
T ss_pred eEEEEEEEEEeCC---------------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Confidence 5999999999831 2356999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
++.. ...++.+||++|++ .+++..||.||+.+.........++.+++++++++.+||.+..++. +..||||||||
T Consensus 70 ~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS~G~~qr 148 (279)
T PRK13635 70 VLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-PHRLSGGQKQR 148 (279)
T ss_pred ECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-cccCCHHHHHH
Confidence 8753 23467799999997 3666789999999875543334445567789999999999888777 49999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999987668999999999974 55 599999999999999999887
Q ss_pred HH
Q 007383 259 LE 260 (605)
Q Consensus 259 ~~ 260 (605)
+.
T Consensus 227 ~~ 228 (279)
T PRK13635 227 IF 228 (279)
T ss_pred Hh
Confidence 64
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-45 Score=370.04 Aligned_cols=218 Identities=27% Similarity=0.395 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 5 ~l~~~~l~~~~-----------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 67 (255)
T PRK11300 5 LLSVSGLMMRF-----------------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ 67 (255)
T ss_pred eEEEeeEEEEE-----------------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCE
Confidence 69999999988 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCcc---c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhc----------CC-----CChhHHHHHHHHHHHHcCCcccc
Q 007383 103 PIKPS---S-FRKLSAYVPQHDACIPSLTVYETFLFSARL----------LV-----PKTSQIDTIITVLLTELRLAHLA 163 (605)
Q Consensus 103 ~~~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~----------~~-----~~~~~~~~~v~~~l~~l~L~~~~ 163 (605)
++... . .+..++|++|++.+++.+||+||+.++... .. ....+..+.++++++.+|+.+..
T Consensus 68 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 147 (255)
T PRK11300 68 HIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA 147 (255)
T ss_pred ECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhh
Confidence 87421 2 234589999999999999999999986431 00 01112345678889999998877
Q ss_pred cccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE
Q 007383 164 STRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 164 ~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~ 243 (605)
++.+ ++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|+++
T Consensus 148 ~~~~-~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 225 (255)
T PRK11300 148 NRQA-GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIY 225 (255)
T ss_pred hCCh-hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 7774 9999999999999999999999999999999999999999999999998655789999999998 5889999999
Q ss_pred EEeCCeEEEecChhhH
Q 007383 244 LLSKGSVVHHGTLASL 259 (605)
Q Consensus 244 ~l~~G~iv~~g~~~~~ 259 (605)
+|++|++++.|+++++
T Consensus 226 ~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 226 VVNQGTPLANGTPEEI 241 (255)
T ss_pred EEECCeEEecCCHHHH
Confidence 9999999999998775
No 101
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-45 Score=381.99 Aligned_cols=230 Identities=22% Similarity=0.277 Sum_probs=196.5
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++||++.|..+.. ...+.+.+.+|+|||++|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~v~nl~~~~~~~~~-------~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g 76 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRG-------LFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG 76 (327)
T ss_pred ceEEEeeeEEEEcCCCC-------ccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 46999999999952110 00011235799999999999999999999999999999999999999999999999
Q ss_pred eeCCc------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCcc-cccccccCCC
Q 007383 102 SPIKP------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLAH-LASTRLAHNL 171 (605)
Q Consensus 102 ~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~L 171 (605)
+++.. ..+++.++||+|++ .+.+.+||.+++....... .....+.++++.++++.+||.+ ..++. +++|
T Consensus 77 ~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-p~~L 155 (327)
T PRK11308 77 QDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRY-PHMF 155 (327)
T ss_pred EEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCC-CccC
Confidence 98742 13567899999997 5889999999998765542 2344456678999999999964 55666 5999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||||||||+||+||+.+|++|++||||+|||..++.+++++|++++++.|.|||++|||++ .+.+++|++++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999998767899999999998 477899999999999999
Q ss_pred EecChhhHH
Q 007383 252 HHGTLASLE 260 (605)
Q Consensus 252 ~~g~~~~~~ 260 (605)
+.|+.+++.
T Consensus 235 e~g~~~~~~ 243 (327)
T PRK11308 235 EKGTKEQIF 243 (327)
T ss_pred EECCHHHHh
Confidence 999988773
No 102
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-45 Score=374.68 Aligned_cols=220 Identities=31% Similarity=0.455 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|++++|+ +.+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~~~----------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 66 (277)
T PRK13652 3 LIETRDLCYSYS----------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66 (277)
T ss_pred eEEEEEEEEEeC----------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 589999999983 2245999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
++.. ...++.++|++|++. .+...||.||+.+.......+.++.+++++++++.+||.+..++.+ +.||||||||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~Gq~qr 145 (277)
T PRK13652 67 PITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-HHLSGGEKKR 145 (277)
T ss_pred ECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-ccCCHHHHHH
Confidence 8742 245677999999973 3345799999987654333334455667899999999988777774 9999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.+|++++|++|++++.|++++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHH
Confidence 999999999999999999999999999999999999998755899999999998 5889999999999999999999988
Q ss_pred HH
Q 007383 259 LE 260 (605)
Q Consensus 259 ~~ 260 (605)
+.
T Consensus 225 ~~ 226 (277)
T PRK13652 225 IF 226 (277)
T ss_pred Hh
Confidence 74
No 103
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=6.2e-45 Score=363.12 Aligned_cols=210 Identities=26% Similarity=0.367 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~l~~~~~----------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (222)
T PRK10908 1 MIRFEHVSKAYL----------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH 64 (222)
T ss_pred CEEEEeeEEEec----------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 378999999883 2356999999999999999999999999999999999999999999999999
Q ss_pred eCCc---c---cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP---S---SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~---~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.. . .+++.++|++|++.+++.+|++||+.+.........++.+++++++++.+++.+..++. +++||||||
T Consensus 65 ~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~ 143 (222)
T PRK10908 65 DITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-PIQLSGGEQ 143 (222)
T ss_pred EcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-chhCCHHHH
Confidence 8642 1 24678999999998888899999999875443333344556788899999998877777 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ +.|||++||+++ ++.+.+|++++|++|+++
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 144 QRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999999999999999764 789999999998 478899999999999985
No 104
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-45 Score=367.68 Aligned_cols=217 Identities=27% Similarity=0.425 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~-----------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (242)
T PRK11124 2 SIQLNGINCFYG-----------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64 (242)
T ss_pred EEEEEeeEEEEC-----------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 588999999982 356999999999999999999999999999999999999999999999999
Q ss_pred eCCc---------ccccCceEEEcCCCCCCCCCCHHHHHHHH-HhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 007383 103 PIKP---------SSFRKLSAYVPQHDACIPSLTVYETFLFS-ARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~~---------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~-~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LS 172 (605)
++.. ...++.++|++|++.+++.+||.||+.+. ....+....+..+++.++++.+|+.+..++. +.+||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS 143 (242)
T PRK11124 65 HFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-PLHLS 143 (242)
T ss_pred ecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCC
Confidence 7621 23456799999999999999999999753 2222223344566788999999998877777 49999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~ 221 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASRVVYMENGHIVE 221 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999998 4778999999999999999
Q ss_pred ecChhhH
Q 007383 253 HGTLASL 259 (605)
Q Consensus 253 ~g~~~~~ 259 (605)
.|+++++
T Consensus 222 ~~~~~~~ 228 (242)
T PRK11124 222 QGDASCF 228 (242)
T ss_pred eCCHHHh
Confidence 9987764
No 105
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.7e-45 Score=362.15 Aligned_cols=207 Identities=28% Similarity=0.427 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|++++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~-----------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (213)
T cd03262 1 IEIKNLHKSFG-----------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLK 63 (213)
T ss_pred CEEEEEEEEEC-----------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 46899999882 3569999999999999999999999999999999999999999999999998
Q ss_pred CCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 104 IKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 104 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
+.. ..+++.++|++|++.+++.+|++||+.+.... .....++.+++++++++.+|+.+..++. +++|||||||
T Consensus 64 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~q 142 (213)
T cd03262 64 LTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-PAQLSGGQQQ 142 (213)
T ss_pred CCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-ccccCHHHHH
Confidence 732 23567899999999999999999999886432 2223344556788999999998877777 4999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++
T Consensus 143 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999986 4789999999998 58889999999999974
No 106
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-45 Score=366.09 Aligned_cols=217 Identities=28% Similarity=0.394 Sum_probs=189.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++|+++.| +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~-----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 66 (237)
T PRK11614 4 VMLSFDKVSAHY-----------------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG 66 (237)
T ss_pred cEEEEEeEEEee-----------------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECC
Confidence 469999999988 235799999999999999999999999999999999999999999999999
Q ss_pred eeCCcc----cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHc-CCcccccccccCCCCHHHH
Q 007383 102 SPIKPS----SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTEL-RLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 102 ~~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~~~~~LSgGer 176 (605)
+++... ..++.++|++|++.+++.+||.||+.+..... ..++.++.++++++.+ ++.+..++. ++.||||||
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~-~~~LS~G~~ 143 (237)
T PRK11614 67 KDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQR-AGTMSGGEQ 143 (237)
T ss_pred EecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCc-hhhCCHHHH
Confidence 987431 24567999999999999999999998864321 1223345667778887 476666666 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|++
T Consensus 144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 221 (237)
T PRK11614 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTG 221 (237)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCH
Confidence 9999999999999999999999999999999999999999764 899999999997 58899999999999999999999
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
+++.
T Consensus 222 ~~~~ 225 (237)
T PRK11614 222 DALL 225 (237)
T ss_pred HHHh
Confidence 8763
No 107
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=372.47 Aligned_cols=218 Identities=28% Similarity=0.382 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ml~~~~l~~~~~-----------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 63 (271)
T PRK13638 1 MLATSDLWFRYQ-----------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63 (271)
T ss_pred CeEEEEEEEEcC-----------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCE
Confidence 478999999982 356999999999999999999999999999999999999999999999999
Q ss_pred eCCc-----ccccCceEEEcCCCCC-CCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP-----SSFRKLSAYVPQHDAC-IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~-----~~~~~~i~yv~Q~~~l-~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.. ...++.++|++|++.. +...|+.||+.+.....+...++..++++++++.+|+.+..++. +.+||||||
T Consensus 64 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~ 142 (271)
T PRK13638 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP-IQCLSHGQK 142 (271)
T ss_pred EcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC-chhCCHHHH
Confidence 8731 2345679999999752 34568999998865433333344556788899999998877777 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999764 789999999998 47889999999999999999998
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
+++.
T Consensus 221 ~~~~ 224 (271)
T PRK13638 221 GEVF 224 (271)
T ss_pred HHHh
Confidence 8763
No 108
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-45 Score=376.25 Aligned_cols=222 Identities=28% Similarity=0.406 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|+++.|... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~i~~~~l~~~~~~~------------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (287)
T PRK13641 2 SIKFENVDYIYSPG------------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGY 69 (287)
T ss_pred EEEEEEEEEEcCCC------------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 58899999998310 001256999999999999999999999999999999999999999999999999
Q ss_pred eCCc-------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 007383 103 PIKP-------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LS 172 (605)
++.. ...++.++|++|++ .++ .+||.||+.+.........++.+++++++++.+||. +..++. +++||
T Consensus 70 ~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS 147 (287)
T PRK13641 70 HITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS-PFELS 147 (287)
T ss_pred ECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC-cccCC
Confidence 8642 23456799999996 345 579999999875433333445567789999999997 566777 49999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMD-DVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999998 4889999999999999999
Q ss_pred ecChhhHH
Q 007383 253 HGTLASLE 260 (605)
Q Consensus 253 ~g~~~~~~ 260 (605)
.|+++++.
T Consensus 226 ~g~~~~~~ 233 (287)
T PRK13641 226 HASPKEIF 233 (287)
T ss_pred eCCHHHHh
Confidence 99988764
No 109
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-45 Score=370.36 Aligned_cols=209 Identities=28% Similarity=0.421 Sum_probs=186.8
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++|++++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~-----------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g 73 (257)
T PRK11247 11 TPLLLNAVSKRYG-----------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT 73 (257)
T ss_pred CcEEEEEEEEEEC-----------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 3499999999982 35699999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
.++. .+++.++|++|++.+++.+||+||+.+... ...++++.++++.+|+.+..++. +.+||||||||++|
T Consensus 74 ~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~-~~~LSgGqkqrl~l 144 (257)
T PRK11247 74 APLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK------GQWRDAALQALAAVGLADRANEW-PAALSGGQKQRVAL 144 (257)
T ss_pred EEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc------chHHHHHHHHHHHcCChhHhcCC-hhhCCHHHHHHHHH
Confidence 8763 356789999999999998999999987531 12345678899999998877777 49999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|++++.|+.+
T Consensus 145 araL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999999997666889999999997 478899999999999999988764
No 110
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.7e-45 Score=360.96 Aligned_cols=207 Identities=31% Similarity=0.470 Sum_probs=178.3
Q ss_pred EEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 25 TGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 25 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
+++|+++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 1 ~~~~l~~~~~~---------------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 65 (211)
T cd03225 1 ELKNLSFSYPD---------------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL 65 (211)
T ss_pred CceeEEEecCC---------------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEc
Confidence 36788888730 125699999999999999999999999999999999999999999999999886
Q ss_pred Cc---ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 105 KP---SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 105 ~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
.. ..+++.++|++|++. .++.+|++||+.+..........+.+++++++++.+++.+..++. ++.||||||||++
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG~~qrv~ 144 (211)
T cd03225 66 TKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-PFTLSGGQKQRVA 144 (211)
T ss_pred ccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-cccCCHHHHHHHH
Confidence 42 335678999999974 366789999998865433223334456788999999998777777 4999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999865 899999999997 5788899999999885
No 111
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-44 Score=379.47 Aligned_cols=223 Identities=20% Similarity=0.276 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC----CccEEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP----TNGTIL 98 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~----~~G~I~ 98 (605)
.|+++||++.|.. +.+...+|+||||++++||++||+|+||||||||+++|+|+++| ++|+|.
T Consensus 3 ~L~v~~l~~~~~~-------------~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~ 69 (326)
T PRK11022 3 LLNVDKLSVHFGD-------------ESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE 69 (326)
T ss_pred eEEEeCeEEEECC-------------CCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE
Confidence 5899999999941 11235799999999999999999999999999999999999974 899999
Q ss_pred ECCeeCCc---cc----ccCceEEEcCCC--CCCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCcc---cccc
Q 007383 99 LNSSPIKP---SS----FRKLSAYVPQHD--ACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLAH---LAST 165 (605)
Q Consensus 99 ~~g~~~~~---~~----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~---~~~~ 165 (605)
++|+++.. +. .++.++||+|++ .+.|.+|+.+++....... +...++.++++.++++.+||.+ ..++
T Consensus 70 ~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~ 149 (326)
T PRK11022 70 FNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDV 149 (326)
T ss_pred ECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 99998742 11 224699999997 4789999999987765542 2344556778999999999964 3455
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
. +++|||||||||+||+||+.+|++|++||||+|||+.++.+++++|++++++.|.|+|++|||++ .+.+++|+|++|
T Consensus 150 ~-p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm 227 (326)
T PRK11022 150 Y-PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVM 227 (326)
T ss_pred C-chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 5 69999999999999999999999999999999999999999999999998767899999999998 478899999999
Q ss_pred eCCeEEEecChhhHH
Q 007383 246 SKGSVVHHGTLASLE 260 (605)
Q Consensus 246 ~~G~iv~~g~~~~~~ 260 (605)
++|++++.|+++++.
T Consensus 228 ~~G~ive~g~~~~~~ 242 (326)
T PRK11022 228 YAGQVVETGKAHDIF 242 (326)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998873
No 112
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=372.92 Aligned_cols=218 Identities=26% Similarity=0.387 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++|+++.|+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ml~~~~l~~~~~----------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 64 (274)
T PRK13644 1 MIRLENVSYSYP----------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGI 64 (274)
T ss_pred CEEEEEEEEEcC----------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 478999999883 2345999999999999999999999999999999999999999999999999
Q ss_pred eCCc----ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 103 PIKP----SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~~~----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
++.. ...++.++|++|++. .+...|+.||+.+.......+..+.+++++++++.+||.+..++. ++.|||||||
T Consensus 65 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~G~~q 143 (274)
T PRK13644 65 DTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-PKTLSGGQGQ 143 (274)
T ss_pred ECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-cccCCHHHHH
Confidence 8742 234677999999975 356689999999875443334445567789999999999888777 4999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ ..+|++++|++|++++.|+++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 220 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPE 220 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999975 4899999999998 46 569999999999999999988
Q ss_pred hHH
Q 007383 258 SLE 260 (605)
Q Consensus 258 ~~~ 260 (605)
++.
T Consensus 221 ~~~ 223 (274)
T PRK13644 221 NVL 223 (274)
T ss_pred HHh
Confidence 763
No 113
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=371.90 Aligned_cols=225 Identities=26% Similarity=0.357 Sum_probs=193.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++|++++|+.. .+...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~~-----------~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g 71 (280)
T PRK13633 3 EMIKCKNVSYKYESN-----------EESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG 71 (280)
T ss_pred ceEEEeeeEEEcCCC-----------CCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 369999999999411 001235699999999999999999999999999999999999999999999999
Q ss_pred eeCCc----ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 102 SPIKP----SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 102 ~~~~~----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
+++.. ...++.+||++|++. .+...||.||+.|.....+.+..+.+++++++++.+||.+..++. +++||||||
T Consensus 72 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS~G~~ 150 (280)
T PRK13633 72 LDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-PHLLSGGQK 150 (280)
T ss_pred EeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCCHHHH
Confidence 98742 235678999999974 233469999999876543334445567889999999999888877 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
||++||++|+.+|+++||||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|++|+++..|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999976568999999999984 655 999999999999999999
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
+++.
T Consensus 229 ~~~~ 232 (280)
T PRK13633 229 KEIF 232 (280)
T ss_pred HHHh
Confidence 8864
No 114
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=368.52 Aligned_cols=217 Identities=23% Similarity=0.377 Sum_probs=188.0
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----Ccc
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNG 95 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G 95 (605)
...|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++| ++|
T Consensus 10 ~~~l~~~~l~~~~-----------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G 72 (258)
T PRK14268 10 QPQIKVENLNLWY-----------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72 (258)
T ss_pred ceeEEEeeeEEEe-----------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcce
Confidence 4479999999988 235699999999999999999999999999999999999875 799
Q ss_pred EEEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc----cccccc
Q 007383 96 TILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA----HLASTR 166 (605)
Q Consensus 96 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~ 166 (605)
+|.++|+++.. ..+++.++|++|++.+++ +|++||+.+.....+.+.++.+++++++++.+++. +..++.
T Consensus 73 ~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 151 (258)
T PRK14268 73 KVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSP 151 (258)
T ss_pred EEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 99999998642 234677999999988887 89999999875443333334456788899999883 345556
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|++++|+
T Consensus 152 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 -ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred -hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999996 3 689999999997 4788999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|++++.|+++++
T Consensus 228 ~G~i~~~~~~~~~ 240 (258)
T PRK14268 228 MGELIEFGQTRQI 240 (258)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998876
No 115
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=371.65 Aligned_cols=221 Identities=24% Similarity=0.379 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+++++|+++.|.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~---------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 70 (271)
T PRK13632 6 VMIKVENVSFSYPN---------------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG 70 (271)
T ss_pred eEEEEEeEEEEcCC---------------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 47999999998831 235699999999999999999999999999999999999999999999999
Q ss_pred eeCCc---ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 102 SPIKP---SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
+++.. ..+++.++|++|++. .++.+||+||+.+.........++.+++++++++.+|+.+..++.+ +.|||||||
T Consensus 71 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~q 149 (271)
T PRK13632 71 ITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-QNLSGGQKQ 149 (271)
T ss_pred EecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-ccCCHHHHH
Confidence 98742 245678999999974 5677899999998754322233445667899999999998888774 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++++++|||++||+++. + ..+|++++|++|+++..|+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999986546899999999984 5 479999999999999999987
Q ss_pred hHH
Q 007383 258 SLE 260 (605)
Q Consensus 258 ~~~ 260 (605)
++.
T Consensus 228 ~~~ 230 (271)
T PRK13632 228 EIL 230 (271)
T ss_pred HHh
Confidence 753
No 116
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.6e-44 Score=364.72 Aligned_cols=216 Identities=27% Similarity=0.417 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 2 ~i~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 64 (242)
T TIGR03411 2 ILYLEGLSVSFD-----------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGT 64 (242)
T ss_pred eEEEEeeEEEcC-----------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCe
Confidence 478999999882 356999999999999999999999999999999999999999999999998
Q ss_pred eCCcc----cccCceEEEcCCCCCCCCCCHHHHHHHHHhcC--------CCChhHHHHHHHHHHHHcCCcccccccccCC
Q 007383 103 PIKPS----SFRKLSAYVPQHDACIPSLTVYETFLFSARLL--------VPKTSQIDTIITVLLTELRLAHLASTRLAHN 170 (605)
Q Consensus 103 ~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~--------~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~ 170 (605)
++... ..++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+|+.+..++.+ +.
T Consensus 65 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 143 (242)
T TIGR03411 65 DLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-GL 143 (242)
T ss_pred ecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-hh
Confidence 86421 13456999999999999999999999864321 1112334567899999999988777774 99
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDME-FVRSIADKVTVLHQGSV 220 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHH-HHHHhCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999999999964 589999999998 58889999999999999
Q ss_pred EEecChhhH
Q 007383 251 VHHGTLASL 259 (605)
Q Consensus 251 v~~g~~~~~ 259 (605)
+..|+++++
T Consensus 221 ~~~~~~~~~ 229 (242)
T TIGR03411 221 LAEGSLDQV 229 (242)
T ss_pred EeeCCHHHH
Confidence 999988775
No 117
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-45 Score=359.05 Aligned_cols=210 Identities=29% Similarity=0.427 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++++. .+. .|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 i~~~~l~~~~~-----------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 61 (211)
T cd03298 1 VRLDKIRFSYG-----------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVD 61 (211)
T ss_pred CEEEeEEEEeC-----------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 46899999882 222 39999999999999999999999999999999999999999999998
Q ss_pred CCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 104 IKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 104 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
+.. ...++.++|++|++.+++.+||+||+.+.........++.+++++++++.+|+.+..++. +.+||||||||++||
T Consensus 62 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~ia 140 (211)
T cd03298 62 VTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-PGELSGGERQRVALA 140 (211)
T ss_pred cCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-cccCCHHHHHHHHHH
Confidence 742 223567999999999999999999998764321111223456788999999998877777 499999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999998656899999999997 478899999999999998654
No 118
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.4e-44 Score=370.26 Aligned_cols=228 Identities=25% Similarity=0.340 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|..... ....+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~~~~~--------~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 73 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGL--------FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQ 73 (265)
T ss_pred eEEEEeEEEEeccCcc--------ccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 4899999999841100 00012467999999999999999999999999999999999999999999999999
Q ss_pred eCCcc------cccCceEEEcCCC--CCCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 007383 103 PIKPS------SFRKLSAYVPQHD--ACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLA-HLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~~~------~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LS 172 (605)
++... .+++.++|++|++ .+++.+||+||+.+..... .....+.++++.++++.+|+. ...++. +.+||
T Consensus 74 ~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS 152 (265)
T TIGR02769 74 DLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKL-PRQLS 152 (265)
T ss_pred EccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCC
Confidence 87421 2456799999996 4677899999998765422 222334556788999999996 566666 49999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+.+++|++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999998755899999999998 4788999999999999999
Q ss_pred ecChhhHH
Q 007383 253 HGTLASLE 260 (605)
Q Consensus 253 ~g~~~~~~ 260 (605)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99988763
No 119
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=371.41 Aligned_cols=221 Identities=26% Similarity=0.392 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~~~------------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 69 (280)
T PRK13649 2 GINLQNVSYTYQAG------------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDT 69 (280)
T ss_pred eEEEEEEEEEcCCC------------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 38899999998410 001246999999999999999999999999999999999999999999999999
Q ss_pred eCCc-------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 007383 103 PIKP-------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLS 172 (605)
Q Consensus 103 ~~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LS 172 (605)
++.. ..+++.++|++|++ .+++ .||+||+.+.......+.++.+++++++++.+||.+ ..++. +++||
T Consensus 70 ~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS 147 (280)
T PRK13649 70 LITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKN-PFELS 147 (280)
T ss_pred EccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCC
Confidence 8642 23567799999996 4554 699999998754333334445667889999999974 55666 49999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMD-DVANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999764 789999999997 5788999999999999999
Q ss_pred ecChhhH
Q 007383 253 HGTLASL 259 (605)
Q Consensus 253 ~g~~~~~ 259 (605)
.|+++++
T Consensus 226 ~g~~~~~ 232 (280)
T PRK13649 226 SGKPKDI 232 (280)
T ss_pred eCCHHHH
Confidence 9998876
No 120
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.3e-42 Score=420.39 Aligned_cols=224 Identities=30% Similarity=0.428 Sum_probs=201.5
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...|+++||++.|.. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++
T Consensus 926 ~~~L~I~nLsK~y~~---------------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~ 990 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP---------------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG 990 (2272)
T ss_pred CceEEEEeEEEEecC---------------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEEC
Confidence 457999999999831 24679999999999999999999999999999999999999999999999
Q ss_pred CeeCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 101 SSPIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 101 g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
|+++.. ...|+.+||++|++.+++.+||+||+.+.+++.+.+.++.+++++++++.+||.+..++.+ ++||||||||
T Consensus 991 G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~-~~LSGGqKQR 1069 (2272)
T TIGR01257 991 GKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA-QDLSGGMQRK 1069 (2272)
T ss_pred CEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-hhCCHHHHHH
Confidence 998742 3456789999999999999999999999877654444556678999999999998888875 9999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
|+||+||+.+|+++||||||+|||+.+++.+.++|++++ + |+|||++||+++ ++..++||+++|++|+++..|++++
T Consensus 1070 LsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257 1070 LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLF 1146 (2272)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999999994 3 889999999998 5888999999999999999999998
Q ss_pred HHHHH
Q 007383 259 LETFL 263 (605)
Q Consensus 259 ~~~~~ 263 (605)
+.+.+
T Consensus 1147 Lk~~~ 1151 (2272)
T TIGR01257 1147 LKNCF 1151 (2272)
T ss_pred HHHhc
Confidence 86654
No 121
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-44 Score=368.52 Aligned_cols=231 Identities=25% Similarity=0.362 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 7 ~l~i~~l~~~~~~---------------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 71 (269)
T PRK13648 7 IIVFKNVSFQYQS---------------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71 (269)
T ss_pred eEEEEEEEEEcCC---------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 5999999999831 1245999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
++.. ..+++.++|++|++. +++..|+.+|+.+.........++..++++++++.+++.+..++. +++||||||||
T Consensus 72 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qr 150 (269)
T PRK13648 72 AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE-PNALSGGQKQR 150 (269)
T ss_pred ECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-cccCCHHHHHH
Confidence 8742 345678999999974 677789999998875433333344556788999999998877777 49999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++|||||+.+|+++||||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999976558999999999984 654 99999999999999999887
Q ss_pred HH---HHHHhCCCCCC
Q 007383 259 LE---TFLLSSGFSVP 271 (605)
Q Consensus 259 ~~---~~~~~~g~~~p 271 (605)
+. ..+...+.++|
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 229 IFDHAEELTRIGLDLP 244 (269)
T ss_pred HhcCHHHHHhcCCCCC
Confidence 63 23444454444
No 122
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.1e-44 Score=377.84 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT---NGTIL 98 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~---~G~I~ 98 (605)
..|+++||++.|.. +.+...+|+||||++++||+++|+|+||||||||+++|+|+++|. +|+|.
T Consensus 11 ~~L~i~~l~~~~~~-------------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~ 77 (330)
T PRK09473 11 ALLDVKDLRVTFST-------------PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77 (330)
T ss_pred ceEEEeCeEEEEec-------------CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE
Confidence 46999999999842 123457999999999999999999999999999999999999985 99999
Q ss_pred ECCeeCCc---cc---cc-CceEEEcCCC--CCCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCccc---ccc
Q 007383 99 LNSSPIKP---SS---FR-KLSAYVPQHD--ACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLAHL---AST 165 (605)
Q Consensus 99 ~~g~~~~~---~~---~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~---~~~ 165 (605)
++|+++.. .. +| +.++||+|++ .+.+.+|+.+++....... +.+.++..+++.++++.+||.+. .+.
T Consensus 78 ~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~ 157 (330)
T PRK09473 78 FNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKM 157 (330)
T ss_pred ECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcC
Confidence 99998742 22 23 4799999998 6889999999998765543 23445566788999999999742 233
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
. +++|||||||||+||+||+.+|++||+||||+|||+.++.+++++|++++++.|.|+|++|||++ .+.+++|++++|
T Consensus 158 ~-p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm 235 (330)
T PRK09473 158 Y-PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVM 235 (330)
T ss_pred C-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 4 69999999999999999999999999999999999999999999999998766899999999998 478899999999
Q ss_pred eCCeEEEecChhhHH
Q 007383 246 SKGSVVHHGTLASLE 260 (605)
Q Consensus 246 ~~G~iv~~g~~~~~~ 260 (605)
++|++++.|+++++.
T Consensus 236 ~~G~ive~g~~~~i~ 250 (330)
T PRK09473 236 YAGRTMEYGNARDVF 250 (330)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998873
No 123
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=369.29 Aligned_cols=219 Identities=29% Similarity=0.421 Sum_probs=191.8
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 10 ~~l~i~~l~~~~~-----------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 72 (265)
T PRK10575 10 TTFALRNVSFRVP-----------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72 (265)
T ss_pred ceEEEeeEEEEEC-----------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC
Confidence 3699999999982 35799999999999999999999999999999999999999999999999
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CC---CChhHHHHHHHHHHHHcCCcccccccccCCCCHH
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LV---PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG 174 (605)
+++. ...+++.++|++|++.+++.+|+.||+.+.... .. ....+.+++++++++.+++.+..++. +++||||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgG 151 (265)
T PRK10575 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-VDSLSGG 151 (265)
T ss_pred EehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-cccCCHH
Confidence 8863 234567799999998888889999999875321 11 11223456788999999998877777 4999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||+++ ++.+.+|++++|++|+++..|
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEec
Confidence 9999999999999999999999999999999999999999998655889999999998 588999999999999999999
Q ss_pred ChhhH
Q 007383 255 TLASL 259 (605)
Q Consensus 255 ~~~~~ 259 (605)
+++++
T Consensus 231 ~~~~~ 235 (265)
T PRK10575 231 TPAEL 235 (265)
T ss_pred CHHHh
Confidence 88775
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.4e-44 Score=360.23 Aligned_cols=214 Identities=28% Similarity=0.366 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|.. +...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 6 ~l~~~~l~~~~~~-------------~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 72 (228)
T PRK10584 6 IVEVHHLKKSVGQ-------------GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQ 72 (228)
T ss_pred eEEEeeeEEEccC-------------CCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCE
Confidence 5899999999831 001135999999999999999999999999999999999999999999999999
Q ss_pred eCCcc---c---c-cCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKPS---S---F-RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~~---~---~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++... . . ++.++|++|++.+++.+|+.||+.+..........+.+++++++++.+++.+..++. +..|||||
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~Ge 151 (228)
T PRK10584 73 PLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-PAQLSGGE 151 (228)
T ss_pred EcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-hhhCCHHH
Confidence 87421 1 2 257999999999999999999998865433223344567789999999998877777 49999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++|||++ .+ +.+|++++|++|++++
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999997665789999999997 35 5599999999999875
No 125
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.5e-44 Score=362.11 Aligned_cols=214 Identities=28% Similarity=0.399 Sum_probs=186.1
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++||++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (230)
T TIGR03410 1 LEVSNLNVYYG-----------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGED 63 (230)
T ss_pred CEEEeEEEEeC-----------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 47899999882 3579999999999999999999999999999999999999999999999998
Q ss_pred CCcc----cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-CcccccccccCCCCHHHHHH
Q 007383 104 IKPS----SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELR-LAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 104 ~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~~~~~LSgGerqR 178 (605)
+... ..++.++|++|++.+++.+|+.||+.+........ .++..+++++.++ +.+..++. +++||||||||
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~-~~~LS~G~~qr 139 (230)
T TIGR03410 64 ITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRR-GGDLSGGQQQQ 139 (230)
T ss_pred CCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCC-hhhCCHHHHHH
Confidence 6421 13567999999999999999999999875433211 2334567777776 56666677 49999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+.++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999998655789999999998 5888999999999999999999887
Q ss_pred H
Q 007383 259 L 259 (605)
Q Consensus 259 ~ 259 (605)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
No 126
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=369.12 Aligned_cols=221 Identities=24% Similarity=0.375 Sum_probs=193.2
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
..+|+++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 5 ~~~l~i~~l~~~~~-----------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 67 (265)
T PRK10253 5 VARLRGEQLTLGYG-----------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67 (265)
T ss_pred ccEEEEEEEEEEEC-----------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEEC
Confidence 35799999999993 3579999999999999999999999999999999999999999999999
Q ss_pred CeeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-C---CCChhHHHHHHHHHHHHcCCcccccccccCCCCH
Q 007383 101 SSPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-L---VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG 173 (605)
Q Consensus 101 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSg 173 (605)
|+++.. ...++.++|++|++.+++.+|++||+.+.... . ....+..+++++++++.+|+.+..++.+ ++|||
T Consensus 68 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~ 146 (265)
T PRK10253 68 GEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-DTLSG 146 (265)
T ss_pred CEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-ccCCh
Confidence 998642 23456799999999998889999999875211 1 1112234567889999999988777774 99999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++.|.|||++||+++ ++.+++|++++|++|++++.
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQ 225 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999998655889999999998 58899999999999999999
Q ss_pred cChhhHH
Q 007383 254 GTLASLE 260 (605)
Q Consensus 254 g~~~~~~ 260 (605)
|+++++.
T Consensus 226 g~~~~~~ 232 (265)
T PRK10253 226 GAPKEIV 232 (265)
T ss_pred CCHHHHh
Confidence 9988763
No 127
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=369.26 Aligned_cols=219 Identities=29% Similarity=0.443 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|. +.+.+++|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~l~~~~~----------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 64 (275)
T PRK13639 1 ILETRDLKYSYP----------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64 (275)
T ss_pred CEEEEEEEEEeC----------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE
Confidence 378999999983 2346999999999999999999999999999999999999999999999999
Q ss_pred eCCc-----ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKP-----SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~-----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
+++. ...++.++|++|++. .+...||.||+.+.........++.++++.++++.+||.+..++. +++||||||
T Consensus 65 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS~Gq~ 143 (275)
T PRK13639 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-PHHLSGGQK 143 (275)
T ss_pred ECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-hhhCCHHHH
Confidence 8741 134678999999963 333479999998764322233445566788999999998887777 599999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.++||++++|++|+++..|++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 221 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTP 221 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999764 899999999998 47889999999999999999999
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
+++.
T Consensus 222 ~~~~ 225 (275)
T PRK13639 222 KEVF 225 (275)
T ss_pred HHHh
Confidence 8864
No 128
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.7e-45 Score=360.06 Aligned_cols=207 Identities=31% Similarity=0.488 Sum_probs=177.6
Q ss_pred EEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 25 TGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 25 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
+++||+++| +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 1 ~~~~l~~~~-----------------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 63 (213)
T cd03235 1 EVEDLTVSY-----------------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL 63 (213)
T ss_pred CcccceeEE-----------------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccH
Confidence 367888888 235699999999999999999999999999999999999999999999999876
Q ss_pred CcccccCceEEEcCCCCCC--CCCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 105 KPSSFRKLSAYVPQHDACI--PSLTVYETFLFSARLLV----PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 105 ~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~~~----~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
. ..++.++|++|++.+. ..+||+||+.+...... ...++.+++++++++.+++.+..++.+ .+||||||||
T Consensus 64 ~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qr 140 (213)
T cd03235 64 E--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-GELSGGQQQR 140 (213)
T ss_pred H--HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-ccCCHHHHHH
Confidence 4 3567899999998763 34799999988643211 122344567889999999987777774 9999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++| +++.|
T Consensus 141 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999999986 5889999999998 578899999999876 55544
No 129
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=365.56 Aligned_cols=216 Identities=24% Similarity=0.387 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~ 96 (605)
.+|+++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| ++|+
T Consensus 6 ~~l~~~~l~~~~~-----------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 68 (254)
T PRK14273 6 AIIETENLNLFYT-----------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGN 68 (254)
T ss_pred ceEEEeeeEEEeC-----------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceE
Confidence 3699999999982 35699999999999999999999999999999999999987 5899
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCC----ccccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRL----AHLASTR 166 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L----~~~~~~~ 166 (605)
|.++|+++.. ...++.++|++|++.+++ +||+||+.+.....+. ...+.+++++++++.+++ .+..++.
T Consensus 69 i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 147 (254)
T PRK14273 69 VIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTN 147 (254)
T ss_pred EEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCC
Confidence 9999998632 235678999999988875 8999999987543321 233446678888999887 3445666
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+++||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++ + +.|||++||+++ ++.+++|++++|+
T Consensus 148 -~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 -ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 49999999999999999999999999999999999999999999999995 3 689999999998 4788999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|+++..|+++++
T Consensus 224 ~G~i~~~g~~~~~ 236 (254)
T PRK14273 224 NGCIEEESSTDEL 236 (254)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998876
No 130
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-44 Score=360.63 Aligned_cols=217 Identities=24% Similarity=0.370 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++||+++|. .+ ..|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~l~~~~~-----------------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 61 (232)
T PRK10771 1 MLKLTDITWLYH-----------------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ 61 (232)
T ss_pred CeEEEEEEEEEC-----------------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCe
Confidence 378999999983 12 23899999999999999999999999999999999999999999999
Q ss_pred eCCcc-cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKPS-SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++... ..++.++|++|++.+++.+|+.||+.+.........+..++++.++++.+|+.+..++.+ +.||||||||++|
T Consensus 62 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~l 140 (232)
T PRK10771 62 DHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-GQLSGGQRQRVAL 140 (232)
T ss_pred ecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-ccCCHHHHHHHHH
Confidence 87421 234679999999999999999999987532211112234567899999999988777774 9999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
|++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 141 aral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 141 ARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999997655889999999998 578899999999999999999987763
No 131
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=366.49 Aligned_cols=217 Identities=28% Similarity=0.474 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~-----------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (255)
T PRK11231 2 TLRTENLTVGY-----------------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK 64 (255)
T ss_pred EEEEEeEEEEE-----------------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCE
Confidence 58999999998 2457999999999999999999999999999999999999999999999998
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhc----CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARL----LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++. ....++.++|++|+..+++.+|+.||+.++... .+...++.+++++++++.+|+.+..++. ++.|||||
T Consensus 65 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~ 143 (255)
T PRK11231 65 PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-LTDLSGGQ 143 (255)
T ss_pred EhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-cccCCHHH
Confidence 763 234456799999999888889999999885321 1111233456788899999998877777 49999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+++..|+
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 144 RQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcC
Confidence 99999999999999999999999999999999999999999764 789999999998 5889999999999999999998
Q ss_pred hhhH
Q 007383 256 LASL 259 (605)
Q Consensus 256 ~~~~ 259 (605)
.+++
T Consensus 222 ~~~~ 225 (255)
T PRK11231 222 PEEV 225 (255)
T ss_pred HHHh
Confidence 8775
No 132
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.4e-44 Score=363.50 Aligned_cols=217 Identities=24% Similarity=0.304 Sum_probs=185.2
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEECC
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART--SPTNGTILLNS 101 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~--~~~~G~I~~~g 101 (605)
|+++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|
T Consensus 1 l~~~~l~~~~~-----------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g 63 (243)
T TIGR01978 1 LKIKDLHVSVE-----------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG 63 (243)
T ss_pred CeEeeEEEEEC-----------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECC
Confidence 47899999982 357999999999999999999999999999999999995 68999999999
Q ss_pred eeCCc---cc-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHcCCc-ccccccccC
Q 007383 102 SPIKP---SS-FRKLSAYVPQHDACIPSLTVYETFLFSARLLV-------PKTSQIDTIITVLLTELRLA-HLASTRLAH 169 (605)
Q Consensus 102 ~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-------~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~ 169 (605)
+++.. .. .+..++|++|++.+++.+|++|++.+...... ....+..+++.++++.+|+. ...++.+ .
T Consensus 64 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~ 142 (243)
T TIGR01978 64 QDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV-N 142 (243)
T ss_pred EecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccccc-c
Confidence 98642 12 23458999999999999999999988654311 11223456788999999997 4556554 5
Q ss_pred -CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc-CCeEEEEeC
Q 007383 170 -NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST-IDRILLLSK 247 (605)
Q Consensus 170 -~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~d~v~~l~~ 247 (605)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+. +|++++|++
T Consensus 143 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 143 EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYVHVLLD 220 (243)
T ss_pred cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeEEEEeC
Confidence 5999999999999999999999999999999999999999999999975 4789999999997 47777 899999999
Q ss_pred CeEEEecChhhHH
Q 007383 248 GSVVHHGTLASLE 260 (605)
Q Consensus 248 G~iv~~g~~~~~~ 260 (605)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (243)
T TIGR01978 221 GRIVKSGDVELAK 233 (243)
T ss_pred CEEEEecCHHHhc
Confidence 9999999987654
No 133
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-44 Score=372.79 Aligned_cols=222 Identities=22% Similarity=0.373 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|++++|..+ ....+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 6 ~l~i~nl~~~~~~~------------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 73 (289)
T PRK13645 6 DIILDNVSYTYAKK------------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDY 73 (289)
T ss_pred eEEEEEEEEEeCCC------------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 48999999998310 001135999999999999999999999999999999999999999999999998
Q ss_pred eCCc--------ccccCceEEEcCCCC--CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCC
Q 007383 103 PIKP--------SSFRKLSAYVPQHDA--CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNL 171 (605)
Q Consensus 103 ~~~~--------~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~L 171 (605)
++.. ..+++.++|++|++. +++ .||+||+.+.....+...++..++++++++.++|. +..++. +++|
T Consensus 74 ~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~-~~~L 151 (289)
T PRK13645 74 AIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRS-PFEL 151 (289)
T ss_pred EccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCC-hhhC
Confidence 8631 235677999999973 343 69999999875433223344456788899999994 566666 4999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997655899999999998 588999999999999999
Q ss_pred EecChhhH
Q 007383 252 HHGTLASL 259 (605)
Q Consensus 252 ~~g~~~~~ 259 (605)
+.|+++++
T Consensus 231 ~~g~~~~~ 238 (289)
T PRK13645 231 SIGSPFEI 238 (289)
T ss_pred EeCCHHHH
Confidence 99998876
No 134
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-45 Score=345.19 Aligned_cols=218 Identities=31% Similarity=0.469 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+.+||||+. ..+.+|+++|++++|||++||+||||||||||||.|+|.+.|++|++.+||.
T Consensus 1 mi~a~nls~~~-----------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~ 63 (259)
T COG4559 1 MIRAENLSYSL-----------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGV 63 (259)
T ss_pred CeeeeeeEEEe-----------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCc
Confidence 47899999998 4678999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP--KTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
+++ +.++.++-+.+||+..+-...||.|.+.++..-... ...+..+.+++.|...++.+.+.+.+ ..|||||||
T Consensus 64 ~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-~~LSGGEqQ 142 (259)
T COG4559 64 PLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY-RTLSGGEQQ 142 (259)
T ss_pred ChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch-hhcCchHHH
Confidence 875 345567789999998876667999999999655432 23356667899999999999998886 999999999
Q ss_pred HHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 178 RVSIGLSLLH------DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 178 Rv~ia~aL~~------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||.+||.|++ ++++||||||||.||...++.++++.++++++ |..|+++.||.+. ...+||||++|++||++
T Consensus 143 RVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 143 RVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 9999999986 55699999999999999999999999999986 6799999999996 78999999999999999
Q ss_pred EecChhhHH
Q 007383 252 HHGTLASLE 260 (605)
Q Consensus 252 ~~g~~~~~~ 260 (605)
..|+++++.
T Consensus 221 a~g~p~~vl 229 (259)
T COG4559 221 ASGSPQDVL 229 (259)
T ss_pred ecCCHHHhc
Confidence 999999873
No 135
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-44 Score=363.59 Aligned_cols=216 Identities=26% Similarity=0.399 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~I 97 (605)
.|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|
T Consensus 3 ~l~~~~l~~~~~-----------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 65 (250)
T PRK14247 3 KIEIRDLKVSFG-----------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV 65 (250)
T ss_pred eEEEEeeEEEEC-----------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE
Confidence 489999999882 35699999999999999999999999999999999999974 79999
Q ss_pred EECCeeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHHcCCcc----ccccccc
Q 007383 98 LLNSSPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV--PKTSQIDTIITVLLTELRLAH----LASTRLA 168 (605)
Q Consensus 98 ~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~v~~~l~~l~L~~----~~~~~~~ 168 (605)
.++|+++.. ..+++.+||++|++.+++.+||.||+.+...... ...++.+++++++++.+|+.+ ..++. +
T Consensus 66 ~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~ 144 (250)
T PRK14247 66 YLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAP-A 144 (250)
T ss_pred EECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-c
Confidence 999998742 3456789999999988889999999998754322 123445667889999999853 34555 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|++++|++|
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQ-QAARISDYVAFLYKG 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999985 3 689999999998 478899999999999
Q ss_pred eEEEecChhhH
Q 007383 249 SVVHHGTLASL 259 (605)
Q Consensus 249 ~iv~~g~~~~~ 259 (605)
+++..|+++++
T Consensus 222 ~i~~~g~~~~~ 232 (250)
T PRK14247 222 QIVEWGPTREV 232 (250)
T ss_pred eEEEECCHHHH
Confidence 99999998876
No 136
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=364.36 Aligned_cols=217 Identities=25% Similarity=0.390 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~I 97 (605)
.|+++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++| ++|+|
T Consensus 4 ~l~~~~l~~~~~-----------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i 66 (253)
T PRK14267 4 AIETVNLRVYYG-----------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV 66 (253)
T ss_pred eEEEEeEEEEeC-----------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence 589999999982 35699999999999999999999999999999999999987 49999
Q ss_pred EECCeeCC-----cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHHcCCc----cccccc
Q 007383 98 LLNSSPIK-----PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV--PKTSQIDTIITVLLTELRLA----HLASTR 166 (605)
Q Consensus 98 ~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~v~~~l~~l~L~----~~~~~~ 166 (605)
.++|+++. ...+++.++|++|++.+++.+||.||+.+...... .+.++.+++++++++.+++. +..++.
T Consensus 67 ~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (253)
T PRK14267 67 RLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDY 146 (253)
T ss_pred EECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccC
Confidence 99999874 12356789999999999999999999998754322 12334456788899999984 234555
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|+
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 -PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 489999999999999999999999999999999999999999999999964 589999999998 4788999999999
Q ss_pred CCeEEEecChhhHH
Q 007383 247 KGSVVHHGTLASLE 260 (605)
Q Consensus 247 ~G~iv~~g~~~~~~ 260 (605)
+|+++..|+++++.
T Consensus 223 ~G~i~~~~~~~~~~ 236 (253)
T PRK14267 223 LGKLIEVGPTRKVF 236 (253)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988763
No 137
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.2e-44 Score=383.51 Aligned_cols=235 Identities=23% Similarity=0.334 Sum_probs=198.4
Q ss_pred EEEEeEEEEEecCCCCccccc--c-----ccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccE
Q 007383 24 LTGSSISYIKSNNSIIPSFIF--E-----ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGT 96 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~--~-----~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~ 96 (605)
|+++||.+-+....+..-... + -.++.+...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 478899988853322100000 0 012345678999999999999999999999999999999999999999999
Q ss_pred EEECCe----eCC---cc---ccc-CceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccc
Q 007383 97 ILLNSS----PIK---PS---SFR-KLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAST 165 (605)
Q Consensus 97 I~~~g~----~~~---~~---~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~ 165 (605)
|.++|+ ++. .. ..| +.++||+|++.+++.+||+||+.++....+.+..+.+++++++++.+||.+..++
T Consensus 81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~ 160 (382)
T TIGR03415 81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK 160 (382)
T ss_pred EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence 999996 332 11 122 5799999999999999999999998655433445566788999999999988887
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
. +.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.++|||++|||++ ++.+++|++++|
T Consensus 161 ~-~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl 238 (382)
T TIGR03415 161 K-PGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIM 238 (382)
T ss_pred C-hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 7 49999999999999999999999999999999999999999999999998766899999999998 588999999999
Q ss_pred eCCeEEEecChhhHH
Q 007383 246 SKGSVVHHGTLASLE 260 (605)
Q Consensus 246 ~~G~iv~~g~~~~~~ 260 (605)
++|+++..|+++++.
T Consensus 239 ~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 239 EGGRIIQHGTPEEIV 253 (382)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999998873
No 138
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-44 Score=365.58 Aligned_cols=222 Identities=26% Similarity=0.374 Sum_probs=195.3
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-C----CccEEE
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-P----TNGTIL 98 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-~----~~G~I~ 98 (605)
|+++||+.+|.. ..+...+++||||++++||++||+|+|||||||+.++|+|+++ | .+|+|.
T Consensus 2 L~v~nL~v~f~~-------------~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~ 68 (316)
T COG0444 2 LEVKNLSVSFPT-------------DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68 (316)
T ss_pred ceEeeeEEEEec-------------CCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEE
Confidence 789999999952 2235679999999999999999999999999999999999997 4 679999
Q ss_pred ECCeeCC---cc---ccc-CceEEEcCCC--CCCCCCCHHHHHHHHHhcCC-C-ChhHHHHHHHHHHHHcCCccc--ccc
Q 007383 99 LNSSPIK---PS---SFR-KLSAYVPQHD--ACIPSLTVYETFLFSARLLV-P-KTSQIDTIITVLLTELRLAHL--AST 165 (605)
Q Consensus 99 ~~g~~~~---~~---~~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~-~-~~~~~~~~v~~~l~~l~L~~~--~~~ 165 (605)
++|+++. .+ ++| +.|+|+|||+ .|.|.+||.+.+.-..+.+. . .+++..+++.++|+.+|+.+- .-+
T Consensus 69 f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~ 148 (316)
T COG0444 69 FDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLK 148 (316)
T ss_pred ECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHh
Confidence 9999763 22 233 5799999997 58999999999988877633 3 356778899999999999753 223
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
.+|++|||||||||.||.||+.+|++||.||||++||...+.+|+++|++++++.|.++|++|||+.. +.++||||+||
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VM 227 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVM 227 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEE
Confidence 33799999999999999999999999999999999999999999999999999889999999999985 89999999999
Q ss_pred eCCeEEEecChhhH
Q 007383 246 SKGSVVHHGTLASL 259 (605)
Q Consensus 246 ~~G~iv~~g~~~~~ 259 (605)
+.|++|+.|+.+++
T Consensus 228 YaG~iVE~g~~~~i 241 (316)
T COG0444 228 YAGRIVEEGPVEEI 241 (316)
T ss_pred ECcEEEEeCCHHHH
Confidence 99999999999877
No 139
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.1e-44 Score=367.05 Aligned_cols=218 Identities=30% Similarity=0.391 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT---NGTILL 99 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~---~G~I~~ 99 (605)
+|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+
T Consensus 4 ~l~~~nl~~~~-----------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~ 66 (262)
T PRK09984 4 IIRVEKLAKTF-----------------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIEL 66 (262)
T ss_pred EEEEeeEEEEe-----------------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEE
Confidence 68999999998 2467999999999999999999999999999999999999885 599999
Q ss_pred CCeeCCc--------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-C-------CCChhHHHHHHHHHHHHcCCcccc
Q 007383 100 NSSPIKP--------SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-L-------VPKTSQIDTIITVLLTELRLAHLA 163 (605)
Q Consensus 100 ~g~~~~~--------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~-------~~~~~~~~~~v~~~l~~l~L~~~~ 163 (605)
+|+++.. ...++.++|++|++.+++.+||+||+.+.... . ....++.+++++++++.+|+.+..
T Consensus 67 ~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 146 (262)
T PRK09984 67 LGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA 146 (262)
T ss_pred CCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 9988632 12356799999999999999999999876421 0 111233456789999999998777
Q ss_pred cccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE
Q 007383 164 STRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 164 ~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~ 243 (605)
++.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|+++
T Consensus 147 ~~~~-~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 147 HQRV-STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred hCCc-cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 7774 9999999999999999999999999999999999999999999999998656899999999997 4789999999
Q ss_pred EEeCCeEEEecChhhH
Q 007383 244 LLSKGSVVHHGTLASL 259 (605)
Q Consensus 244 ~l~~G~iv~~g~~~~~ 259 (605)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
No 140
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-44 Score=369.02 Aligned_cols=221 Identities=21% Similarity=0.326 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTN---GTIL 98 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~---G~I~ 98 (605)
.+|+++|+++.|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.
T Consensus 4 ~~l~i~~l~~~~~~---------------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~ 68 (282)
T PRK13640 4 NIVEFKHVSFTYPD---------------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKIT 68 (282)
T ss_pred ceEEEEEEEEEcCC---------------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEE
Confidence 46999999999831 12459999999999999999999999999999999999999987 9999
Q ss_pred ECCeeCCc---ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHH
Q 007383 99 LNSSPIKP---SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174 (605)
Q Consensus 99 ~~g~~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG 174 (605)
++|+++.. ...++.+||++|++. .++..||.||+.+.......+.++.+++++++++.+||.+..++. +++||||
T Consensus 69 i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS~G 147 (282)
T PRK13640 69 VDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-PANLSGG 147 (282)
T ss_pred ECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-cccCCHH
Confidence 99998753 234578999999974 667789999998865433334455667889999999999887777 5999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. + ..+|++++|++|++++.|
T Consensus 148 ~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 148 QKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999986568999999999984 5 579999999999999999
Q ss_pred ChhhHH
Q 007383 255 TLASLE 260 (605)
Q Consensus 255 ~~~~~~ 260 (605)
+++++.
T Consensus 226 ~~~~~~ 231 (282)
T PRK13640 226 SPVEIF 231 (282)
T ss_pred CHHHHh
Confidence 998764
No 141
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.6e-44 Score=358.61 Aligned_cols=217 Identities=44% Similarity=0.654 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS---PTNGTILL 99 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~---~~~G~I~~ 99 (605)
.+.++|+++.++. .+..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.+
T Consensus 3 ~~~~~~~~~~~~~-------------~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~ 69 (226)
T cd03234 3 VLPWWDVGLKAKN-------------WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF 69 (226)
T ss_pred cceeecceeeeec-------------CccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEE
Confidence 3679999999841 1124679999999999999999999999999999999999999 89999999
Q ss_pred CCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-CC--ChhHHHHHHHH-HHHHcCCcccccccccCCCCHHH
Q 007383 100 NSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VP--KTSQIDTIITV-LLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~--~~~~~~~~v~~-~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
+|+++.....++.++|++|++.+++.+||+||+.+.+... .. ......+++++ .++.+++.+..++.+ ++|||||
T Consensus 70 ~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~ 148 (226)
T cd03234 70 NGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-KGISGGE 148 (226)
T ss_pred CCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-cCcCHHH
Confidence 9998765556788999999999999999999999876542 11 12223334555 899999988777774 9999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++..++.+.+|++++|++|++++.|
T Consensus 149 ~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 149 RRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999999764 7899999999853589999999999999998765
No 142
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=362.58 Aligned_cols=213 Identities=32% Similarity=0.412 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|+++++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 3 ~l~~~~l~~~~~-----------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 65 (241)
T PRK14250 3 EIEFKEVSYSSF-----------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGV 65 (241)
T ss_pred eEEEEeEEEEeC-----------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 589999999882 356999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERRR 178 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerqR 178 (605)
++.. ...++.++|++|++.+++ .||+||+.+.....+ ..++++.++++.+++. +..++. +.+||||||||
T Consensus 66 ~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~~qr 139 (241)
T PRK14250 66 DIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRD-VKNLSGGEAQR 139 (241)
T ss_pred EhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCC-cccCCHHHHHH
Confidence 8642 345678999999988887 699999987543221 1245678899999996 455666 59999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998655889999999998 4788999999999999999999887
Q ss_pred H
Q 007383 259 L 259 (605)
Q Consensus 259 ~ 259 (605)
+
T Consensus 219 ~ 219 (241)
T PRK14250 219 F 219 (241)
T ss_pred H
Confidence 6
No 143
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.1e-44 Score=354.99 Aligned_cols=211 Identities=25% Similarity=0.386 Sum_probs=183.8
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++||++.|. . +++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 ~~~~~l~~~~~-----------------~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 61 (213)
T TIGR01277 1 LALDKVRYEYE-----------------H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS 61 (213)
T ss_pred CeEEeeeEEeC-----------------C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 47899999882 1 4689999999999999999999999999999999999999999999998
Q ss_pred CCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 104 IKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 104 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
+.. ...++.++|++|++.+++.+|+.||+.+..........+.+++++++++.+|+.+..++. +++||||||||++||
T Consensus 62 ~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrl~la 140 (213)
T TIGR01277 62 HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL-PEQLSGGQRQRVALA 140 (213)
T ss_pred cccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCC-cccCCHHHHHHHHHH
Confidence 742 235677999999999999999999998764321111223356788899999998877777 499999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
++|+.+|++++|||||+|||+.++..+.+.|++++++.++|||++||+++ ++.+++|++++|++|+++..|+
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999998655889999999997 4788999999999999998875
No 144
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=366.81 Aligned_cols=218 Identities=24% Similarity=0.390 Sum_probs=188.0
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----Cc
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TN 94 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~ 94 (605)
+...|+++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++
T Consensus 16 ~~~~l~~~nl~~~~~-----------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 78 (267)
T PRK14235 16 TEIKMRARDVSVFYG-----------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVT 78 (267)
T ss_pred CCceEEEEeEEEEEC-----------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCc
Confidence 444799999999982 35699999999999999999999999999999999999874 89
Q ss_pred cEEEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHcCCcc----cc
Q 007383 95 GTILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP--KTSQIDTIITVLLTELRLAH----LA 163 (605)
Q Consensus 95 G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~l~L~~----~~ 163 (605)
|+|.++|+++.. ..+++.++|++|++.+++. ||.||+.+....... +..+.+++++++++.+|+.+ ..
T Consensus 79 G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 157 (267)
T PRK14235 79 GKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL 157 (267)
T ss_pred eEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 999999998742 2356779999999888875 999999987543221 23344567889999999954 34
Q ss_pred cccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE
Q 007383 164 STRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 164 ~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~ 243 (605)
++. +++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|+++
T Consensus 158 ~~~-~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~-~~~~~~d~v~ 233 (267)
T PRK14235 158 HEP-GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQ-QAARVSQRTA 233 (267)
T ss_pred hCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHH-HHHhhCCEEE
Confidence 455 489999999999999999999999999999999999999999999999964 579999999998 4788999999
Q ss_pred EEeCCeEEEecChhhH
Q 007383 244 LLSKGSVVHHGTLASL 259 (605)
Q Consensus 244 ~l~~G~iv~~g~~~~~ 259 (605)
+|++|+++..|+++++
T Consensus 234 ~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 234 FFHLGNLVEVGDTEKM 249 (267)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999988776
No 145
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-44 Score=358.69 Aligned_cols=217 Identities=30% Similarity=0.472 Sum_probs=192.1
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++++. .+.+++|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~-----------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 63 (232)
T cd03300 1 IELENVSKFYG-----------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKD 63 (232)
T ss_pred CEEEeEEEEeC-----------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 46899999882 3579999999999999999999999999999999999999999999999998
Q ss_pred CCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 104 IKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 104 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
+.. ...++.++|++|++.+++.+|++||+.+.....+.+....+++++++++.+|+.+..++. +..||||||||++||
T Consensus 64 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~G~~qrl~la 142 (232)
T cd03300 64 ITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRK-PSQLSGGQQQRVAIA 142 (232)
T ss_pred cCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCHHHHHHHHHH
Confidence 753 123567999999999998899999998876543333344566788999999998877777 499999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
|+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|+++ ++.+.+|++++|++|++++.|+.+++
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999998655889999999997 47899999999999999999987765
No 146
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4.2e-44 Score=367.06 Aligned_cols=228 Identities=23% Similarity=0.314 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|..+.. ..+.+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~~~~--------~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 75 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG--------WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDH 75 (267)
T ss_pred eEEEeceEEEecCCCC--------cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 5899999999841100 00012356999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCC--CCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDA--CIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGe 175 (605)
++.. ...++.++|++|++. +++.+|+.|++.+..... .....+.+++++++++.+|+. +..++. +.+|||||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~ 154 (267)
T PRK15112 76 PLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-PHMLAPGQ 154 (267)
T ss_pred ECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-chhcCHHH
Confidence 8742 223457999999974 677889999998875542 223334556788999999994 555666 48999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999998755889999999998 5888999999999999999998
Q ss_pred hhhHH
Q 007383 256 LASLE 260 (605)
Q Consensus 256 ~~~~~ 260 (605)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 87763
No 147
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-44 Score=380.10 Aligned_cols=210 Identities=28% Similarity=0.414 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|++ ||+++|. ++. + |+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 1 ~l~~-~l~k~~~-----------------~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~ 60 (352)
T PRK11144 1 MLEL-NFKQQLG-----------------DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGR 60 (352)
T ss_pred CeEE-EEEEEeC-----------------CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 3677 8999882 232 3 899999999999999999999999999999999999999999998
Q ss_pred eCCc-------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKP-------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++.. ...++.++|++|++.+++.+||+||+.++.. ...+++++++++.+||.+..++. +++|||||
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~-~~~LSgGq 133 (352)
T PRK11144 61 VLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRY-PGSLSGGE 133 (352)
T ss_pred EccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCC-cccCCHHH
Confidence 8642 2346789999999999999999999988642 12346788999999998888777 49999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|+++..|+
T Consensus 134 ~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~ 212 (352)
T PRK11144 134 KQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGP 212 (352)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999998766899999999997 5889999999999999999999
Q ss_pred hhhHH
Q 007383 256 LASLE 260 (605)
Q Consensus 256 ~~~~~ 260 (605)
++++.
T Consensus 213 ~~~i~ 217 (352)
T PRK11144 213 LEEVW 217 (352)
T ss_pred HHHHH
Confidence 98873
No 148
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.3e-44 Score=356.09 Aligned_cols=210 Identities=29% Similarity=0.424 Sum_probs=185.9
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~l~~v~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~ 63 (223)
T TIGR03740 1 LETKNLSKRFG-----------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP 63 (223)
T ss_pred CEEEeEEEEEC-----------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence 46899999882 3579999999999999999999999999999999999999999999999998
Q ss_pred CCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHH
Q 007383 104 IKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGL 183 (605)
Q Consensus 104 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~ 183 (605)
+.... ++.++|++|++.+++.+|++||+.+....... .++++.++++.+|+++..++. +.+||||||||++||+
T Consensus 64 ~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~~rv~lar 137 (223)
T TIGR03740 64 WTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKK-AKQFSLGMKQRLGIAI 137 (223)
T ss_pred ccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhh-HhhCCHHHHHHHHHHH
Confidence 75332 35799999999999889999999887544321 134678899999998877777 4999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 184 SLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 184 aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.+.+|++++|++|++++.|++.+
T Consensus 138 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 138 ALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999975 4789999999998 4788999999999999999998753
No 149
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6e-44 Score=363.69 Aligned_cols=216 Identities=30% Similarity=0.457 Sum_probs=189.0
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 2 l~~~~l~~~~-----------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 64 (256)
T TIGR03873 2 LRLSRVSWSA-----------------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVD 64 (256)
T ss_pred ceEEeEEEEE-----------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEE
Confidence 6889999988 24579999999999999999999999999999999999999999999999998
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc----CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARL----LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
+.. ...++.++|++|++.+++.+||+||+.+.... ......+..+++.++++.+++.+..++.+ .+||||||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~ 143 (256)
T TIGR03873 65 LHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-STLSGGER 143 (256)
T ss_pred cccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-ccCCHHHH
Confidence 642 23456799999998778889999999875321 11112234567889999999988777774 99999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||+++ ++.+++|++++|++|+++..|+.
T Consensus 144 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 144 QRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCH
Confidence 999999999999999999999999999999999999999975 4789999999998 58899999999999999999998
Q ss_pred hhH
Q 007383 257 ASL 259 (605)
Q Consensus 257 ~~~ 259 (605)
+++
T Consensus 222 ~~~ 224 (256)
T TIGR03873 222 REV 224 (256)
T ss_pred HHh
Confidence 775
No 150
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-44 Score=362.16 Aligned_cols=215 Identities=25% Similarity=0.395 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~I 97 (605)
.|+++||+++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|
T Consensus 6 ~l~~~~l~~~~~-----------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 68 (253)
T PRK14242 6 KMEARGLSFFYG-----------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68 (253)
T ss_pred EEEEeeeEEEEC-----------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE
Confidence 489999999982 3569999999999999999999999999999999999964 589999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----cccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~~ 167 (605)
.++|+++.. ..+++.++|++|++.+++ .||+||+.+.....+. ..++.+++++++++.+++.+ ..++.
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 146 (253)
T PRK14242 69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHES- 146 (253)
T ss_pred EECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCC-
Confidence 999998742 234678999999998887 5999999987543322 22344567888999999853 34555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|++++|++
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~-~~~~~~d~v~~l~~ 223 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQ-QAARVSDVTAFFYM 223 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHH-HHHHhCCEEEEEEC
Confidence 48999999999999999999999999999999999999999999999995 3 689999999998 47899999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|+++..|+++++
T Consensus 224 G~i~~~g~~~~~ 235 (253)
T PRK14242 224 GKLIEVGPTEQI 235 (253)
T ss_pred CEEEEeCCHHHH
Confidence 999999988765
No 151
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=8.1e-44 Score=358.69 Aligned_cols=218 Identities=29% Similarity=0.439 Sum_probs=192.2
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|++++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 i~i~~l~~~~~-----------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~ 63 (237)
T TIGR00968 1 IEIANISKRFG-----------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQD 63 (237)
T ss_pred CEEEEEEEEEC-----------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 47899999882 3569999999999999999999999999999999999999999999999998
Q ss_pred CCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 104 IKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 104 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
+.. ...++.++|++|++.+++.+|+.||+.+.....+.......+.++++++.+++.+..++. ++.||+||+||++||
T Consensus 64 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~G~~qrl~la 142 (237)
T TIGR00968 64 ATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-PNQLSGGQRQRVALA 142 (237)
T ss_pred cCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-hhhCCHHHHHHHHHH
Confidence 753 223567999999999999999999999876543333334456788999999998777777 499999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
++|+.+|++++|||||+|||+.++..+.+.|++++++.++|||++||+++ ++.+.+|++++|++|++++.|+.+++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999997655789999999997 578999999999999999999988763
No 152
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-44 Score=363.63 Aligned_cols=216 Identities=27% Similarity=0.415 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~ 96 (605)
..|+++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+
T Consensus 12 ~~l~~~~l~~~~~-----------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~ 74 (260)
T PRK10744 12 SKIQVRNLNFYYG-----------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE 74 (260)
T ss_pred ceEEEEEEEEEeC-----------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE
Confidence 4599999999982 3469999999999999999999999999999999999986 48999
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCc----cccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLA----HLASTR 166 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~----~~~~~~ 166 (605)
|.++|+++.. ..+++.++|++|++.+++ .||+||+.+..... ..+.++.+++++++++.+++. +..++.
T Consensus 75 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 75 ILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred EEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 9999998742 235678999999988887 79999999875432 223344556788999999974 334555
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++ + +.|||++||+++ ++.+++|++++|+
T Consensus 154 -~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~ 229 (260)
T PRK10744 154 -GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQ-QAARCSDYTAFMY 229 (260)
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999995 3 589999999997 4788999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|+++..|+++++
T Consensus 230 ~G~i~~~g~~~~~ 242 (260)
T PRK10744 230 LGELIEFGNTDTI 242 (260)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998776
No 153
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=365.42 Aligned_cols=221 Identities=20% Similarity=0.297 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|.. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~--------------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 69 (277)
T PRK13642 4 ILEVENLVFKYEK--------------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE 69 (277)
T ss_pred eEEEEEEEEEcCC--------------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 6899999999831 12345999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
++.. ...++.+||++|++. .++..||.||+.+.........++..++++++++.+||.+..++. +..||||||||
T Consensus 70 ~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qr 148 (277)
T PRK13642 70 LLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-PARLSGGQKQR 148 (277)
T ss_pred ECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCCHHHHHH
Confidence 8742 245678999999974 566789999998865432223344556789999999998877777 49999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|+++..|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999987558999999999984 54 699999999999999999887
Q ss_pred HH
Q 007383 259 LE 260 (605)
Q Consensus 259 ~~ 260 (605)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 63
No 154
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-44 Score=375.03 Aligned_cols=223 Identities=19% Similarity=0.224 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC----CCccEEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS----PTNGTIL 98 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~----~~~G~I~ 98 (605)
.|+++||++.|.. +.+.+.+|+|||++|++||+++|+|+||||||||+++|+|+++ +++|+|.
T Consensus 3 ~L~v~~l~~~y~~-------------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~ 69 (330)
T PRK15093 3 LLDIRNLTIEFKT-------------SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR 69 (330)
T ss_pred eEEEeeeEEEEeC-------------CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE
Confidence 5899999999952 1234679999999999999999999999999999999999997 5899999
Q ss_pred ECCeeCCc---cc----ccCceEEEcCCCC--CCCCCCHHHHHHHHHhcC---C---CChhHHHHHHHHHHHHcCCccc-
Q 007383 99 LNSSPIKP---SS----FRKLSAYVPQHDA--CIPSLTVYETFLFSARLL---V---PKTSQIDTIITVLLTELRLAHL- 162 (605)
Q Consensus 99 ~~g~~~~~---~~----~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~---~---~~~~~~~~~v~~~l~~l~L~~~- 162 (605)
++|+++.. .. .++.++||+|++. +.+.+||.+++....... + ....+.++++.++++.+||.+.
T Consensus 70 ~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 70 FDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred ECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH
Confidence 99998742 11 2357999999975 678899999998643221 1 1113445678899999999742
Q ss_pred --ccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCC
Q 007383 163 --ASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTID 240 (605)
Q Consensus 163 --~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d 240 (605)
.++. +++|||||||||+||+||+.+|++|||||||+|||+.++.+++++|++++++.|.|||++|||++ .+.+++|
T Consensus 150 ~~~~~~-p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 150 DAMRSF-PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred HHHhCC-chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 3455 59999999999999999999999999999999999999999999999998766899999999998 4889999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 007383 241 RILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 241 ~v~~l~~G~iv~~g~~~~~~ 260 (605)
++++|++|++++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999988763
No 155
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-44 Score=357.66 Aligned_cols=216 Identities=31% Similarity=0.468 Sum_probs=190.4
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.+. .+ +|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~-----------------~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~ 62 (235)
T cd03299 1 LKVENLSKDWK-----------------EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKD 62 (235)
T ss_pred CeeEeEEEEeC-----------------Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE
Confidence 46889999872 23 8999999999999999999999999999999999999999999999998
Q ss_pred CCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 104 IKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 104 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
+.. ...++.++|++|++.+++.+|+.||+.+..........+.++.+.++++.+||.+..++.+ +.||||||||++||
T Consensus 63 ~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl~la 141 (235)
T cd03299 63 ITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-ETLSGGEQQRVAIA 141 (235)
T ss_pred cCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-ccCCHHHHHHHHHH
Confidence 753 2235689999999999999999999988754332233445667888999999988888774 99999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++. ++.+.+|++++|++|+++..|+.+++
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999997655899999999997 47889999999999999999988765
No 156
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.6e-44 Score=360.26 Aligned_cols=228 Identities=30% Similarity=0.368 Sum_probs=189.1
Q ss_pred EEEeEEEEEecCCCCcc---cccc-ccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 25 TGSSISYIKSNNSIIPS---FIFE-ACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 25 ~~~~ls~~~~~~~~~~~---~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
+++|+++.|........ ...+ ...+.+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~ 81 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA 81 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 56788888865331100 0111 1133356789999999999999999999999999999999999999999999999
Q ss_pred CeeCCc--ccccCceEEEc-CCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 101 SSPIKP--SSFRKLSAYVP-QHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 101 g~~~~~--~~~~~~i~yv~-Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
|+++.. ...++.++|++ |++.+++.+||+||+.+.........++..++++++++.+|+.+..++.+ .+|||||||
T Consensus 82 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LS~G~~q 160 (236)
T cd03267 82 GLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV-RQLSLGQRM 160 (236)
T ss_pred CEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh-hhCCHHHHH
Confidence 987532 34567899998 55678888999999988765433333445667888999999988888775 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.++|||++||+++ ++.+++|++++|++|++++.|
T Consensus 161 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 161 RAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999998766889999999997 578899999999999998764
No 157
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.2e-44 Score=378.67 Aligned_cols=199 Identities=28% Similarity=0.475 Sum_probs=179.3
Q ss_pred eeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-------ccccCceEEEcCCCCCCCCCCHHH
Q 007383 58 NVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-------SSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 58 ~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++.. ...++.++|++|++.+++.+||+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 9999999999999999999999999999999999999999999998742 134577999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVM 210 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 210 (605)
|+.++.... ...+.+++++++++.+||.+..++. +++|||||||||+|||||+.+|++|||||||+|||+.++..+.
T Consensus 95 nl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~ 171 (354)
T TIGR02142 95 NLRYGMKRA--RPSERRISFERVIELLGIGHLLGRL-PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171 (354)
T ss_pred HHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCC-hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 999875432 2234456789999999999888877 4999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 211 QTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 211 ~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 172 ~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 172 PYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999998766899999999998 588999999999999999999988764
No 158
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=361.78 Aligned_cols=216 Identities=22% Similarity=0.391 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~I 97 (605)
.++++|++++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|
T Consensus 4 ~l~i~~v~~~~~-----------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I 66 (258)
T PRK14241 4 RIDVKDLNIYYG-----------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV 66 (258)
T ss_pred cEEEeeEEEEEC-----------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE
Confidence 589999999982 35699999999999999999999999999999999999874 79999
Q ss_pred EECCeeCC-----cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc----ccccccc
Q 007383 98 LLNSSPIK-----PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA----HLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~~~ 167 (605)
.++|+++. ...+++.++|++|++.+++.+||+||+.+.....+. +.++.+++++++++.+|+. +..++.
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 145 (258)
T PRK14241 67 LLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKP- 145 (258)
T ss_pred EECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCC-
Confidence 99998863 124567899999999999999999999987644322 2344566788899999984 344555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe-
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS- 246 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~- 246 (605)
+.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|+
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~-~~~~~~d~i~~l~~ 222 (258)
T PRK14241 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQ-QAARVSDQTAFFNL 222 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEec
Confidence 489999999999999999999999999999999999999999999999963 579999999997 4789999999997
Q ss_pred -----CCeEEEecChhhH
Q 007383 247 -----KGSVVHHGTLASL 259 (605)
Q Consensus 247 -----~G~iv~~g~~~~~ 259 (605)
+|++++.|+++++
T Consensus 223 ~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 223 EATGKPGRLVEIDDTEKI 240 (258)
T ss_pred ccCCCCceEEecCCHHHH
Confidence 7999999998876
No 159
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.7e-43 Score=360.74 Aligned_cols=218 Identities=24% Similarity=0.370 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 6 ~l~~~~l~~~~~-----------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 68 (258)
T PRK11701 6 LLSVRGLTKLYG-----------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68 (258)
T ss_pred eEEEeeeEEEcC-----------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCc
Confidence 599999999983 356999999999999999999999999999999999999999999999998
Q ss_pred e-----CCc---cc----ccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCcc-ccccc
Q 007383 103 P-----IKP---SS----FRKLSAYVPQHD--ACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLAH-LASTR 166 (605)
Q Consensus 103 ~-----~~~---~~----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~~-~~~~~ 166 (605)
+ +.. .. .++.++|++|++ .+++.+|+.||+.+...... ....+.++++.++++.+++.+ ..++.
T Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 69 DGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 7 532 11 245699999997 36778899999976543221 122344667889999999964 55666
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||+++ .+.+.+|++++|+
T Consensus 149 -~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~ 226 (258)
T PRK11701 149 -PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMK 226 (258)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 49999999999999999999999999999999999999999999999997755889999999998 4778999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|++++.|+++++
T Consensus 227 ~g~i~~~~~~~~~ 239 (258)
T PRK11701 227 QGRVVESGLTDQV 239 (258)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998876
No 160
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=364.04 Aligned_cols=218 Identities=29% Similarity=0.419 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC--------c
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT--------N 94 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~--------~ 94 (605)
+|+++|+++++ +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +
T Consensus 1 ml~~~nl~~~~-----------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~ 63 (272)
T PRK13547 1 MLTADHLHVAR-----------------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVT 63 (272)
T ss_pred CeEEEEEEEEE-----------------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCc
Confidence 48899999988 2457999999999999999999999999999999999999997 9
Q ss_pred cEEEECCeeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHHcCCcccccccc
Q 007383 95 GTILLNSSPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL----VPKTSQIDTIITVLLTELRLAHLASTRL 167 (605)
Q Consensus 95 G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~v~~~l~~l~L~~~~~~~~ 167 (605)
|+|.++|+++.. ...++.++|++|++..++.+||+||+.+..... .....+.+++++++++.+|+.+..++.
T Consensus 64 G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~- 142 (272)
T PRK13547 64 GDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD- 142 (272)
T ss_pred eEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-
Confidence 999999998642 234567899999987666789999998753211 111123456788999999998877777
Q ss_pred cCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc
Q 007383 168 AHNLSGGERRRVSIGLSLL---------HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST 238 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 238 (605)
+..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~ 221 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARH 221 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHh
Confidence 4999999999999999999 5999999999999999999999999999998655789999999998 57889
Q ss_pred CCeEEEEeCCeEEEecChhhH
Q 007383 239 IDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 239 ~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+|++++|++|++++.|+++++
T Consensus 222 ~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 222 ADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred CCEEEEEECCeEEEecCHHHH
Confidence 999999999999999998776
No 161
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=351.75 Aligned_cols=192 Identities=32% Similarity=0.459 Sum_probs=170.7
Q ss_pred eeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-------ccccCceEEEcCCCCCCCCCCHHH
Q 007383 58 NVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-------SSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 58 ~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
|+|+++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|++|++.+++.+|++|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 99999999 9999999999999999999999999999999999988642 124567999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVM 210 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 210 (605)
|+.+..... .....+++++++++.+|+.+..++. +.+||||||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 95 ~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (214)
T cd03297 95 NLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRY-PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL 171 (214)
T ss_pred HHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcC-cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 998865322 2233456788999999998777777 4999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 211 QTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 211 ~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 172 ~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 172 PELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999998765889999999997 478899999999999998765
No 162
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=358.27 Aligned_cols=217 Identities=24% Similarity=0.360 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC---CCC--CccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSAR---TSP--TNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~---~~~--~~G~ 96 (605)
++|+++|+++.| +.+.+|+|+|+++++||+++|+||||||||||+++|+|+ .+| ++|+
T Consensus 2 ~~l~~~~~~~~~-----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~ 64 (250)
T PRK14245 2 VKIDARDVNFWY-----------------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGE 64 (250)
T ss_pred cEEEEEEEEEEE-----------------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceE
Confidence 568999999998 235699999999999999999999999999999999997 454 5899
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----ccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LASTR 166 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~ 166 (605)
|.++|+++.. ...++.++|++|++.+++ .|+.||+.+.....+. ..+..++.++++++.+++.+ ..++.
T Consensus 65 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14245 65 IRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKES 143 (250)
T ss_pred EEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCC
Confidence 9999998742 234677999999988887 5999999887544322 22334567888999999853 34555
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|++++|+
T Consensus 144 -~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14245 144 -AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQ-QAARVSDKTAFFY 219 (250)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 58999999999999999999999999999999999999999999999995 3 689999999998 4789999999999
Q ss_pred CCeEEEecChhhHH
Q 007383 247 KGSVVHHGTLASLE 260 (605)
Q Consensus 247 ~G~iv~~g~~~~~~ 260 (605)
+|++++.|+++++.
T Consensus 220 ~G~~~~~~~~~~~~ 233 (250)
T PRK14245 220 MGEMVEYDDTKKIF 233 (250)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999998773
No 163
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=359.90 Aligned_cols=237 Identities=27% Similarity=0.347 Sum_probs=208.1
Q ss_pred ceEEEEeEEEEEecCCCCcccccc-cc------CCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFE-AC------SSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTN 94 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~-~~------~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~ 94 (605)
..++++|+++-+....+..-.... .. ++.+...-++|+|++++.||+..|||-||||||||+++|.++++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 468999999988432111000000 00 12344567899999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCc------ccc-cCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccc
Q 007383 95 GTILLNSSPIKP------SSF-RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL 167 (605)
Q Consensus 95 G~I~~~g~~~~~------~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~ 167 (605)
|+|.++|+++.. .++ ++.+++|||+..|+|..||.||..|+....+.++++.++++.+.++.+||..+.++.
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y- 161 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY- 161 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC-
Confidence 999999998742 233 467999999999999999999999999888888899999999999999999999887
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
|++|||||||||.+||||+.+|+|||+|||+|+|||--+.++.+.|.++.++.++|||++|||.+ |.+++.|||.+|++
T Consensus 162 p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkd 240 (386)
T COG4175 162 PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKD 240 (386)
T ss_pred cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecC
Confidence 59999999999999999999999999999999999999999999999999888999999999998 69999999999999
Q ss_pred CeEEEecChhhHH
Q 007383 248 GSVVHHGTLASLE 260 (605)
Q Consensus 248 G~iv~~g~~~~~~ 260 (605)
|+++..|+|+|+.
T Consensus 241 G~ivQ~Gtp~eIl 253 (386)
T COG4175 241 GEIVQVGTPEEIL 253 (386)
T ss_pred CeEEEeCCHHHHH
Confidence 9999999999984
No 164
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-44 Score=330.70 Aligned_cols=214 Identities=30% Similarity=0.443 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++++++.+. ...+...||++|++.+++||-+||+|||||||||||-+++|+..|++|+|.+.|+
T Consensus 6 ii~~~~l~ktvg-------------~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~ 72 (228)
T COG4181 6 IIEVHHLSKTVG-------------QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQ 72 (228)
T ss_pred eeehhhhhhhhc-------------CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCc
Confidence 689999999884 2345678999999999999999999999999999999999999999999999999
Q ss_pred eCCc------cccc-CceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKP------SSFR-KLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~------~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++.. ..+| +++|+|+|...++|+||..||+...+.+.+.+..+..+...+.++.+||.+..+.. |++|||||
T Consensus 73 ~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~Hy-P~qLSGGE 151 (228)
T COG4181 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHY-PAQLSGGE 151 (228)
T ss_pred chhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccC-ccccCchH
Confidence 8742 1233 67999999999999999999999998886655566677889999999999887666 69999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
+|||+||||++..|++||.||||-+||..+..+|.++|-.+..+.|.|.|++||||. +...|||.+-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999999999999999999999996 578899999999999874
No 165
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-43 Score=357.19 Aligned_cols=215 Identities=23% Similarity=0.354 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS---PTNGTILL 99 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~---~~~G~I~~ 99 (605)
+++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.+
T Consensus 2 ~~~~~~l~~~~~-----------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~ 64 (246)
T PRK14269 2 IAKTTNLNLFYG-----------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI 64 (246)
T ss_pred ceeeeeeEEEEC-----------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEE
Confidence 578999999982 3579999999999999999999999999999999999974 68999999
Q ss_pred CCeeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHcCCc----ccccccccCC
Q 007383 100 NSSPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP--KTSQIDTIITVLLTELRLA----HLASTRLAHN 170 (605)
Q Consensus 100 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~l~L~----~~~~~~~~~~ 170 (605)
+|+++.. ...++.++|++|++.+++ .||+||+.+.....+. ...+.+++++++++.+++. +..++. +.+
T Consensus 65 ~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~~ 142 (246)
T PRK14269 65 EGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN-ALA 142 (246)
T ss_pred CCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCC-ccc
Confidence 9998742 245678999999998887 6999999987543321 1234456688899999995 334555 489
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|++++|++|++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i 219 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQ-QGKRVADYTAFFHLGEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHH-HHHhhCcEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986 3 789999999997 47889999999999999
Q ss_pred EEecChhhH
Q 007383 251 VHHGTLASL 259 (605)
Q Consensus 251 v~~g~~~~~ 259 (605)
++.|+.+++
T Consensus 220 ~~~g~~~~~ 228 (246)
T PRK14269 220 IEFGESKEF 228 (246)
T ss_pred EEECCHHHH
Confidence 999998876
No 166
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=362.33 Aligned_cols=216 Identities=23% Similarity=0.387 Sum_probs=185.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~ 96 (605)
.+|+++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+
T Consensus 12 ~~l~i~nl~~~~~-----------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~ 74 (269)
T PRK14259 12 IIISLQNVTISYG-----------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR 74 (269)
T ss_pred ceEEEEeEEEEEC-----------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 5799999999982 3579999999999999999999999999999999999987 58999
Q ss_pred EEECCeeCC-----cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc----ccccccc
Q 007383 97 ILLNSSPIK-----PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA----HLASTRL 167 (605)
Q Consensus 97 I~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~ 167 (605)
|.++|+++. ...+++.++|++|++.+++. ||+||+.+.+...... .+.+++++++++.+++. +..++.
T Consensus 75 v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 151 (269)
T PRK14259 75 VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNES- 151 (269)
T ss_pred EEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCC-
Confidence 999998863 22456779999999988874 9999999876543222 23355677888888763 345555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+||||||||++|||+|+.+|++|||||||+|||+.++..+.++|++++ + ++|||++||+++ ++.++||++++|++
T Consensus 152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~i~~l~~ 228 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQ-QAVRVSDMTAFFNA 228 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEEEEEec
Confidence 48999999999999999999999999999999999999999999999995 3 589999999998 58899999999996
Q ss_pred -----------CeEEEecChhhHH
Q 007383 248 -----------GSVVHHGTLASLE 260 (605)
Q Consensus 248 -----------G~iv~~g~~~~~~ 260 (605)
|++++.|+++++.
T Consensus 229 ~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 229 EEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred cccccccccccceEEEeCCHHHHH
Confidence 6789999998874
No 167
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=359.43 Aligned_cols=217 Identities=25% Similarity=0.398 Sum_probs=187.0
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC--C---Ccc
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS--P---TNG 95 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~--~---~~G 95 (605)
..+|+++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ | ++|
T Consensus 10 ~~~l~i~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G 72 (259)
T PRK14274 10 QEVYQINGMNLWYG-----------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTG 72 (259)
T ss_pred CceEEEeeEEEEEC-----------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce
Confidence 34699999999882 3569999999999999999999999999999999999987 3 699
Q ss_pred EEEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----cccc
Q 007383 96 TILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LAST 165 (605)
Q Consensus 96 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~ 165 (605)
+|.++|+++.. ...++.++|++|++.+++. ||+||+.+.....+. .+++.+++++++++.+++.+ ..++
T Consensus 73 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 151 (259)
T PRK14274 73 EMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT 151 (259)
T ss_pred EEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence 99999998741 2346779999999988875 999999887544322 23444567888999999853 3455
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 152 ~-~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l 227 (259)
T PRK14274 152 Q-ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQ-QAARVSDQTAFF 227 (259)
T ss_pred C-cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 5 589999999999999999999999999999999999999999999999963 689999999998 588999999999
Q ss_pred eCCeEEEecChhhH
Q 007383 246 SKGSVVHHGTLASL 259 (605)
Q Consensus 246 ~~G~iv~~g~~~~~ 259 (605)
++|+++..|+++++
T Consensus 228 ~~G~i~~~g~~~~~ 241 (259)
T PRK14274 228 YMGELVECNDTNKM 241 (259)
T ss_pred ECCEEEEECCHHHH
Confidence 99999999998876
No 168
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=357.22 Aligned_cols=216 Identities=25% Similarity=0.421 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~ 96 (605)
..|+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+
T Consensus 3 ~~l~~~~l~~~~~-----------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~ 65 (251)
T PRK14270 3 IKMESKNLNLWYG-----------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGE 65 (251)
T ss_pred cEEEEEEeEEEEC-----------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccE
Confidence 4689999999882 35699999999999999999999999999999999999875 7999
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc----cccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA----HLASTR 166 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~~ 166 (605)
|.++|+++.. ...++.++|++|++.+++ +|++||+.+.....+. ...+.+++++++++.+++. +..++.
T Consensus 66 i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 144 (251)
T PRK14270 66 VLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKS 144 (251)
T ss_pred EEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCC
Confidence 9999998742 134677999999998887 8999999987544322 2334456778899999874 334555
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|+
T Consensus 145 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 -ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 589999999999999999999999999999999999999999999999975 479999999997 5889999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|++++.|+++++
T Consensus 221 ~G~i~~~~~~~~~ 233 (251)
T PRK14270 221 MGDLIEFNKTEKI 233 (251)
T ss_pred CCeEEEeCCHHHH
Confidence 9999999998876
No 169
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-43 Score=356.67 Aligned_cols=216 Identities=26% Similarity=0.420 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC--C---CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS--P---TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~--~---~~G~I 97 (605)
.|+++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ | ++|+|
T Consensus 4 ~l~~~nl~~~~~-----------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 66 (252)
T PRK14256 4 KVKLEQLNVHFG-----------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI 66 (252)
T ss_pred EEEEEEEEEEeC-----------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE
Confidence 489999999982 3569999999999999999999999999999999999986 4 68999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----cccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~~ 167 (605)
.++|+++.. ..+++.++|++|++.+++.+|++||+.+....... ...+.+++++++++.+++.+ ..++.
T Consensus 67 ~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 145 (252)
T PRK14256 67 LLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSN- 145 (252)
T ss_pred EECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCC-
Confidence 999998742 23567899999999999999999999876543221 23344567888999999853 33444
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++
T Consensus 146 ~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T PRK14256 146 AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQ-QAARVSDYTAFFYM 222 (252)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHH-HHHhhCCEEEEEEC
Confidence 589999999999999999999999999999999999999999999999974 479999999998 57899999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|+++..|+++++
T Consensus 223 G~i~~~~~~~~~ 234 (252)
T PRK14256 223 GDLVECGETKKI 234 (252)
T ss_pred CEEEEeCCHHHH
Confidence 999999998775
No 170
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-43 Score=361.46 Aligned_cols=216 Identities=22% Similarity=0.384 Sum_probs=185.4
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCcc
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNG 95 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G 95 (605)
...|+++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|
T Consensus 37 ~~~l~i~~l~~~~~-----------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G 99 (285)
T PRK14254 37 ETVIEARDLNVFYG-----------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEG 99 (285)
T ss_pred CceEEEEEEEEEEC-----------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce
Confidence 34699999999982 3569999999999999999999999999999999999987 6899
Q ss_pred EEEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc----cccccc
Q 007383 96 TILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA----HLASTR 166 (605)
Q Consensus 96 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~ 166 (605)
+|.++|+++.. ..+++.++|++|++.+++. ||.||+.+.....+.. .+.+++++++++.+++. +..++.
T Consensus 100 ~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~ 177 (285)
T PRK14254 100 ELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSS 177 (285)
T ss_pred EEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCC
Confidence 99999988631 2456789999999988875 9999999875543222 23456788999999984 344555
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE-EE
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL-LL 245 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~-~l 245 (605)
+.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++||++ +|
T Consensus 178 -~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 -GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 489999999999999999999999999999999999999999999999975 379999999998 5788999975 67
Q ss_pred eCCeEEEecChhhH
Q 007383 246 SKGSVVHHGTLASL 259 (605)
Q Consensus 246 ~~G~iv~~g~~~~~ 259 (605)
++|+++..|+++++
T Consensus 254 ~~G~i~~~g~~~~~ 267 (285)
T PRK14254 254 TGGELVEFDDTDKI 267 (285)
T ss_pred eCCEEEEeCCHHHH
Confidence 99999999998775
No 171
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-44 Score=332.83 Aligned_cols=222 Identities=30% Similarity=0.419 Sum_probs=199.2
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.++..+|++.+|+. ....+|+|+|+++.+||.++++||||||||||||+++|+.+|..|+|.+||
T Consensus 2 ~~l~~~~~sl~y~g---------------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~ 66 (259)
T COG4525 2 CMLNVSHLSLSYEG---------------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66 (259)
T ss_pred ceeehhheEEecCC---------------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECC
Confidence 35778899998841 225699999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
.+++... ..-|.|+|++.++|.+||.||+.|+.++.+.++.+..+++.+.+..+||++..++. +-+|||||||||.|
T Consensus 67 r~i~gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~-i~qLSGGmrQRvGi 143 (259)
T COG4525 67 RRIEGPG--AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY-IWQLSGGMRQRVGI 143 (259)
T ss_pred EeccCCC--ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc-eEeecchHHHHHHH
Confidence 9986322 23489999999999999999999999998888888999999999999999887766 49999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe--CCeEEEecChhhH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS--KGSVVHHGTLASL 259 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~--~G~iv~~g~~~~~ 259 (605)
||||+.+|++|+||||+++||..+++++.++|-++.++.|+.++++||+.+ |..-+++++++|+ .|+++..-+++-.
T Consensus 144 ARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~ 222 (259)
T COG4525 144 ARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFA 222 (259)
T ss_pred HHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHH
Confidence 999999999999999999999999999999999999999999999999998 5778899999998 4899987777643
Q ss_pred HHH
Q 007383 260 ETF 262 (605)
Q Consensus 260 ~~~ 262 (605)
..|
T Consensus 223 rR~ 225 (259)
T COG4525 223 RRY 225 (259)
T ss_pred HHh
Confidence 444
No 172
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-43 Score=358.88 Aligned_cols=215 Identities=26% Similarity=0.394 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~I 97 (605)
+|+++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|
T Consensus 21 ~l~~~~l~~~~~-----------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 83 (268)
T PRK14248 21 ILEVKDLSIYYG-----------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83 (268)
T ss_pred eEEEEEEEEEeC-----------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE
Confidence 699999999982 3569999999999999999999999999999999999864 689999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc----ccccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA----HLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~~~ 167 (605)
.++|+++.. ..+++.++|++|++.+++. |++||+.+....... .....++.+.+.++.+++. +..++.
T Consensus 84 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 161 (268)
T PRK14248 84 LYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSS- 161 (268)
T ss_pred EECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC-
Confidence 999998742 1346779999999988875 999999987543221 1223355677888888884 334555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+++||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++
T Consensus 162 ~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~v~~l~~ 238 (268)
T PRK14248 162 ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQ-QALRVSDRTAFFLN 238 (268)
T ss_pred cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHH-HHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999999964 579999999997 47889999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|++++.|+++++
T Consensus 239 G~i~~~~~~~~~ 250 (268)
T PRK14248 239 GDLVEYDQTEQI 250 (268)
T ss_pred CEEEEeCCHHHH
Confidence 999999998776
No 173
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-43 Score=355.45 Aligned_cols=215 Identities=31% Similarity=0.433 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC--C---CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS--P---TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~--~---~~G~I 97 (605)
+|+++|++++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|
T Consensus 5 ~l~~~~l~~~~~-----------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i 67 (252)
T PRK14239 5 ILQVSDLSVYYN-----------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67 (252)
T ss_pred eEEEEeeEEEEC-----------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE
Confidence 689999999982 3569999999999999999999999999999999999853 6 59999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHcCCc----ccccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPK-TSQIDTIITVLLTELRLA----HLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~l~L~----~~~~~~~ 167 (605)
.++|+++.. ..+++.++|++|++.+++ .||+||+.+.....+.. .+..+++++++++.+++. +..++.
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 145 (252)
T PRK14239 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDS- 145 (252)
T ss_pred EECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcC-
Confidence 999998732 234677999999998887 79999999875433222 233456778889999874 234555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+++||||||||++||+||+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++ ++.+.+|++++|++
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~ 222 (252)
T PRK14239 146 ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQ-QASRISDRTGFFLD 222 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHH-HHHHhCCEEEEEEC
Confidence 489999999999999999999999999999999999999999999999964 589999999997 58899999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|++++.|+.+++
T Consensus 223 G~i~~~g~~~~~ 234 (252)
T PRK14239 223 GDLIEYNDTKQM 234 (252)
T ss_pred CEEEEeCCHHHH
Confidence 999999998876
No 174
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=5.7e-43 Score=356.12 Aligned_cols=216 Identities=25% Similarity=0.359 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC----CccEEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP----TNGTIL 98 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~----~~G~I~ 98 (605)
.|+++|+++++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.
T Consensus 4 ~l~~~~l~~~~~------------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~ 65 (254)
T PRK10418 4 QIELRNIALQAA------------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVL 65 (254)
T ss_pred EEEEeCeEEEec------------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEE
Confidence 689999999871 3599999999999999999999999999999999999999 999999
Q ss_pred ECCeeCCcccc-cCceEEEcCCCC--CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc---cccccccCCCC
Q 007383 99 LNSSPIKPSSF-RKLSAYVPQHDA--CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH---LASTRLAHNLS 172 (605)
Q Consensus 99 ~~g~~~~~~~~-~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~~~~~LS 172 (605)
++|++++.... ++.++||+|++. +.+..|+.+++.+.+...+.. ..++++.++++.+++.+ ..++. +.+||
T Consensus 66 ~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-~~~LS 142 (254)
T PRK10418 66 LDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLY-PFEMS 142 (254)
T ss_pred ECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcC-CcccC
Confidence 99998754333 357999999974 456689999987754432222 23367889999999976 34566 49999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++.
T Consensus 143 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999998766899999999998 4788999999999999999
Q ss_pred ecChhhHH
Q 007383 253 HGTLASLE 260 (605)
Q Consensus 253 ~g~~~~~~ 260 (605)
.|+++++.
T Consensus 222 ~~~~~~~~ 229 (254)
T PRK10418 222 QGDVETLF 229 (254)
T ss_pred ecCHHHHh
Confidence 99988763
No 175
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-43 Score=355.06 Aligned_cols=216 Identities=27% Similarity=0.446 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~I 97 (605)
+|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|
T Consensus 3 ~l~~~~l~~~~~-----------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 65 (250)
T PRK14262 3 IIEIENFSAYYG-----------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI 65 (250)
T ss_pred eEEEEeeEEEeC-----------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence 589999999882 35699999999999999999999999999999999999874 89999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----cccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~~ 167 (605)
.++|+++.. ...++.++|++|++.+++ .|++||+.+....... ..+..++.++++++.+++.+ ..++.
T Consensus 66 ~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 143 (250)
T PRK14262 66 YFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKP- 143 (250)
T ss_pred EECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCC-
Confidence 999988742 234678999999998887 8999999987543322 22334566788899998853 34555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++
T Consensus 144 ~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~-~~~~~~d~i~~l~~ 220 (250)
T PRK14262 144 GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG-QAIRIADYIAFMYR 220 (250)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 489999999999999999999999999999999999999999999999963 589999999997 47899999999999
Q ss_pred CeEEEecChhhHH
Q 007383 248 GSVVHHGTLASLE 260 (605)
Q Consensus 248 G~iv~~g~~~~~~ 260 (605)
|+++..|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14262 221 GELIEYGPTREIV 233 (250)
T ss_pred CEEEEecCHHHHH
Confidence 9999999988764
No 176
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2e-43 Score=354.21 Aligned_cols=199 Identities=32% Similarity=0.456 Sum_probs=175.0
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHH
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFS 135 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 135 (605)
|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...+|++|++.+++.+||+||+.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999875321 2358999999999999999999886
Q ss_pred Hhc-CC-CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007383 136 ARL-LV-PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTL 213 (605)
Q Consensus 136 ~~~-~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L 213 (605)
... .. ...++.+++++++++.+|+.+..++.+ ++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP-GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh-hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 432 11 233445667889999999988777774 999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 214 KSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 214 ~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
++++++.|+|||++||+++ ++.+++|++++|++|+++..|+..+
T Consensus 158 ~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 9998766889999999998 5889999999999999998886543
No 177
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-43 Score=357.97 Aligned_cols=217 Identities=24% Similarity=0.352 Sum_probs=187.6
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCcc
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNG 95 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G 95 (605)
..+|+++|+++++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+++ |++|
T Consensus 18 ~~~l~~~nl~~~~~-----------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 80 (267)
T PRK14237 18 EIALSTKDLHVYYG-----------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80 (267)
T ss_pred CeEEEEeeEEEEEC-----------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce
Confidence 34699999999982 3579999999999999999999999999999999999986 5899
Q ss_pred EEEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc----ccccc
Q 007383 96 TILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA----HLAST 165 (605)
Q Consensus 96 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~ 165 (605)
+|.++|+++.. ...++.++|++|++.+++ .||+||+.++....+. .+++.++++.++++.+++. +..++
T Consensus 81 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~ 159 (267)
T PRK14237 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHK 159 (267)
T ss_pred EEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcC
Confidence 99999998742 234677999999988887 5999999987543222 2334556788899999985 33455
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
. +++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ + +.|||++||+++ ++.++||++++|
T Consensus 160 ~-~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 160 S-ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhcCEEEEE
Confidence 5 59999999999999999999999999999999999999999999999995 3 689999999998 588999999999
Q ss_pred eCCeEEEecChhhH
Q 007383 246 SKGSVVHHGTLASL 259 (605)
Q Consensus 246 ~~G~iv~~g~~~~~ 259 (605)
++|++++.|+++++
T Consensus 236 ~~G~i~~~g~~~~~ 249 (267)
T PRK14237 236 YLGDLIEYDKTRNI 249 (267)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998876
No 178
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-43 Score=354.86 Aligned_cols=218 Identities=26% Similarity=0.393 Sum_probs=186.5
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-----ccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT-----NGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~-----~G~ 96 (605)
++|+++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+
T Consensus 3 ~~l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~ 65 (252)
T PRK14272 3 LLLSAQDVNIYYG-----------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR 65 (252)
T ss_pred EEEEEeeeEEEEC-----------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCcee
Confidence 4789999999982 457999999999999999999999999999999999999864 899
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc----cccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA----HLASTR 166 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~~ 166 (605)
|.++|+++.. ..+++.++|++|++.+++.+|+.||+.+....... ..++..+.+++.++.+++. +..++.
T Consensus 66 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 145 (252)
T PRK14272 66 ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP 145 (252)
T ss_pred EEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC
Confidence 9999998742 23466799999999999999999999876543221 2333455677777777653 344555
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|++++|+
T Consensus 146 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 -ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999996 3 589999999998 5888999999999
Q ss_pred CCeEEEecChhhHH
Q 007383 247 KGSVVHHGTLASLE 260 (605)
Q Consensus 247 ~G~iv~~g~~~~~~ 260 (605)
+|++++.|+++++.
T Consensus 222 ~G~i~~~~~~~~~~ 235 (252)
T PRK14272 222 VGDLVEHGPTDQLF 235 (252)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988763
No 179
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-43 Score=356.74 Aligned_cols=218 Identities=26% Similarity=0.426 Sum_probs=188.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-----ccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT-----NGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~-----~G~I 97 (605)
.|+++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|+ +|+|
T Consensus 7 ~l~~~nl~~~~~-----------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i 69 (261)
T PRK14258 7 AIKVNNLSFYYD-----------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV 69 (261)
T ss_pred eEEEeeEEEEeC-----------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE
Confidence 599999999982 346999999999999999999999999999999999999985 8999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----cccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~~ 167 (605)
.++|+++.. ..+++.++|++|++.+++ +|++||+.+....... +..+.++++.++++.+++.+ ..++.
T Consensus 70 ~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 147 (261)
T PRK14258 70 EFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKS- 147 (261)
T ss_pred EECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCC-
Confidence 999988631 235677999999988888 8999999887543221 23344567888999998743 34555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++
T Consensus 148 ~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~ 226 (261)
T PRK14258 148 ALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKG 226 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEcc
Confidence 48999999999999999999999999999999999999999999999987655889999999998 58899999999999
Q ss_pred -----CeEEEecChhhHH
Q 007383 248 -----GSVVHHGTLASLE 260 (605)
Q Consensus 248 -----G~iv~~g~~~~~~ 260 (605)
|++++.|+++++.
T Consensus 227 ~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 227 NENRIGQLVEFGLTKKIF 244 (261)
T ss_pred CCCcCceEEEeCCHHHHH
Confidence 9999999998873
No 180
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-43 Score=353.72 Aligned_cols=215 Identities=27% Similarity=0.440 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~I 97 (605)
.|+++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ++|+|
T Consensus 3 ~l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 65 (250)
T PRK14240 3 KISVKDLDLFYG-----------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV 65 (250)
T ss_pred eEEEEEEEEEEC-----------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 488999999982 34699999999999999999999999999999999998763 69999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc----ccccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA----HLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~~~ 167 (605)
.++|+++.. ...++.++|++|++.+++ +|++||+.+.....+. ..++.+++++++++.+++. +..++.
T Consensus 66 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 143 (250)
T PRK14240 66 LLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKS- 143 (250)
T ss_pred EECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcC-
Confidence 999998742 235677999999988887 8999999987544322 2334566788889998874 334555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~v~~l~~ 220 (250)
T PRK14240 144 ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQ-QASRISDKTAFFLN 220 (250)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHH-HHHhhCCEEEEEEC
Confidence 48999999999999999999999999999999999999999999999995 3 689999999987 58899999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|+++..|+++++
T Consensus 221 G~i~~~~~~~~~ 232 (250)
T PRK14240 221 GEIVEFGDTVDL 232 (250)
T ss_pred CEEEEeCCHHHH
Confidence 999999998776
No 181
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6.4e-43 Score=358.49 Aligned_cols=227 Identities=26% Similarity=0.359 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|..... ..+..++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 3 ~l~~~nl~~~~~~~~~--------~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~ 74 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL--------SGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGE 74 (268)
T ss_pred eEEEeceEEEecCCcc--------ccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 5899999999841000 00011367999999999999999999999999999999999999999999999999
Q ss_pred eCCc------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 007383 103 PIKP------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LS 172 (605)
++.. ...++.++|++|++ .+++..|+.|++.+.... ......+..++++++++.+|+. ...++. ++.||
T Consensus 75 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS 153 (268)
T PRK10419 75 PLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKR-PPQLS 153 (268)
T ss_pred eccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCC-CccCC
Confidence 7642 12467899999997 466788999999775432 2223334556789999999996 466666 49999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.+.|||++||+++ ++.+++|++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 999999999999999999999999999999999999999999998765889999999998 5788999999999999999
Q ss_pred ecChhhH
Q 007383 253 HGTLASL 259 (605)
Q Consensus 253 ~g~~~~~ 259 (605)
.|+++++
T Consensus 233 ~g~~~~~ 239 (268)
T PRK10419 233 TQPVGDK 239 (268)
T ss_pred eCChhhc
Confidence 9998775
No 182
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.4e-43 Score=349.36 Aligned_cols=211 Identities=25% Similarity=0.427 Sum_probs=184.5
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+.. +.+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 2 l~~~~l~~~~~~-------------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~ 68 (220)
T TIGR02982 2 ISIRNLNHYYGH-------------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQE 68 (220)
T ss_pred EEEEEEEEEccC-------------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 789999998831 1123679999999999999999999999999999999999999999999999998
Q ss_pred CCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 104 IKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 104 ~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
+.. ...++.++|++|++.+++.+|+.||+.+.....+ ...++.+++++++++.+|+.+..++. +++||||||
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~G~~ 147 (220)
T TIGR02982 69 LYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY-PHNLSGGQK 147 (220)
T ss_pred hHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCCHHHH
Confidence 742 1346789999999999998999999998765432 23445567789999999998877777 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|||++||+++ +.+++|++++|++|++
T Consensus 148 qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 148 QRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999998656899999999986 4589999999999986
No 183
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.4e-43 Score=352.55 Aligned_cols=204 Identities=27% Similarity=0.410 Sum_probs=177.6
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC----CccEEEECCeeCCcccc-cCceEEEcCCCC--CCCCCC
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP----TNGTILLNSSPIKPSSF-RKLSAYVPQHDA--CIPSLT 127 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~----~~G~I~~~g~~~~~~~~-~~~i~yv~Q~~~--l~~~lT 127 (605)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 58999999999999999999999999999999999998 89999999998754333 357999999974 567789
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc---ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007383 128 VYETFLFSARLLVPKTSQIDTIITVLLTELRLA---HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSR 204 (605)
Q Consensus 128 v~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~ 204 (605)
+.|++.+..........+.+++++++++.+++. +..++. +..|||||||||+|||+|+.+|++|+|||||+|||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKY-PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCC-hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 999998765432222234456789999999997 455666 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999998655789999999998 588899999999999999999987763
No 184
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.9e-43 Score=379.56 Aligned_cols=232 Identities=25% Similarity=0.373 Sum_probs=201.6
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....++++||++.|..++. ++ .+..+...+++||||++++||++||+|+||||||||.|+|+|+.+|++|+|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~----~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~ 350 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKG----LF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIF 350 (539)
T ss_pred cCceeEeeeeeeeeccccc----cc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 5567999999999964321 11 11134577999999999999999999999999999999999999999999999
Q ss_pred CCeeCC-----cccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCcc-cccccccCC
Q 007383 100 NSSPIK-----PSSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLAH-LASTRLAHN 170 (605)
Q Consensus 100 ~g~~~~-----~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~ 170 (605)
+|.+.+ ....++.+-+|+||+ .+.|.+||++++........ ....+.++++.++++.+||.. ..+++ |++
T Consensus 351 ~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry-P~e 429 (539)
T COG1123 351 DGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY-PHE 429 (539)
T ss_pred eCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC-chh
Confidence 998732 123567788999986 58999999999998877633 235667788999999999986 45555 799
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++.|.|.|++|||+.. +..+||||++|++|+|
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~G~i 508 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYDGRI 508 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEECCeE
Confidence 999999999999999999999999999999999999999999999999999999999999985 8999999999999999
Q ss_pred EEecChhhH
Q 007383 251 VHHGTLASL 259 (605)
Q Consensus 251 v~~g~~~~~ 259 (605)
|+.|+.+++
T Consensus 509 VE~G~~~~v 517 (539)
T COG1123 509 VEEGPTEKV 517 (539)
T ss_pred EEeCCHHHH
Confidence 999988776
No 185
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=391.27 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 4 ~i~~~~l~~~~-----------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~ 66 (501)
T PRK10762 4 LLQLKGIDKAF-----------------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGK 66 (501)
T ss_pred eEEEeeeEEEe-----------------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 59999999998 2457999999999999999999999999999999999999999999999999
Q ss_pred eCCcc---c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcC---C-CChhHHHHHHHHHHHHcCCcccccccccCCCCHH
Q 007383 103 PIKPS---S-FRKLSAYVPQHDACIPSLTVYETFLFSARLL---V-PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174 (605)
Q Consensus 103 ~~~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~---~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG 174 (605)
++... . .++.++|++|++.+++.+||+||+.++.... . .+.++.+++++++++.+|+.+..++.+ ++||||
T Consensus 67 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG 145 (501)
T PRK10762 67 EVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-GELSIG 145 (501)
T ss_pred ECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-hhCCHH
Confidence 87421 1 3467999999999999999999999875431 1 123344567889999999988777774 999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
|||||+||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||++ ++.++||++++|++|+++..|
T Consensus 146 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 146 EQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLK-EIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999999764 889999999998 588999999999999999999
Q ss_pred ChhhH
Q 007383 255 TLASL 259 (605)
Q Consensus 255 ~~~~~ 259 (605)
+++++
T Consensus 224 ~~~~~ 228 (501)
T PRK10762 224 EVADL 228 (501)
T ss_pred CcCcC
Confidence 88765
No 186
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=7.8e-43 Score=354.82 Aligned_cols=218 Identities=25% Similarity=0.336 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 3 ~l~~~~l~~~~~-----------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (253)
T TIGR02323 3 LLQVSGLSKSYG-----------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR 65 (253)
T ss_pred eEEEeeeEEEeC-----------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecc
Confidence 589999999983 356899999999999999999999999999999999999999999999997
Q ss_pred e-----CCc---c----cccCceEEEcCCCC--CCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCc-cccccc
Q 007383 103 P-----IKP---S----SFRKLSAYVPQHDA--CIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLA-HLASTR 166 (605)
Q Consensus 103 ~-----~~~---~----~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~-~~~~~~ 166 (605)
+ +.. . ..++.++|++|++. +.+.+|+.||+.+...... ....+.++.++++++.+++. ...++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 66 SGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 6 431 1 12356999999974 4566799999976432211 11223456788999999996 366666
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||+++ ++.+.+|++++|+
T Consensus 146 -~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~ 223 (253)
T TIGR02323 146 -PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQ 223 (253)
T ss_pred -chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 49999999999999999999999999999999999999999999999987655889999999997 4788999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|++++.|+++++
T Consensus 224 ~G~i~~~~~~~~~ 236 (253)
T TIGR02323 224 QGRVVESGLTDQV 236 (253)
T ss_pred CCEEEEECCHHHH
Confidence 9999999988766
No 187
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-43 Score=343.74 Aligned_cols=195 Identities=32% Similarity=0.504 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS---PTNGTILL 99 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~---~~~G~I~~ 99 (605)
++.|+||+|.|+. +++++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 3 ~~~~~~~~~~~~~-------------~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i 69 (202)
T cd03233 3 TLSWRNISFTTGK-------------GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69 (202)
T ss_pred eEEEEccEEEecc-------------CCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE
Confidence 5899999999952 2245679999999999999999999999999999999999999 89999999
Q ss_pred CCeeCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 100 NSSPIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 100 ~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
+|+++.. ...++.++|++|++.+++.+||+||+.+.+... .++. +..|||||||
T Consensus 70 ~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~-~~~LS~Ge~q 125 (202)
T cd03233 70 NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEF-VRGISGGERK 125 (202)
T ss_pred CCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccc-hhhCCHHHHH
Confidence 9998753 245678999999999999999999998764210 3445 4899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
|++||+||+.+|+++||||||+|||+.++..+.+.|++++++.+.|+|+++|+...++.+.+|++++|++|++++.|
T Consensus 126 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 126 RVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999987546677776655433688999999999999998764
No 188
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-43 Score=391.24 Aligned_cols=217 Identities=24% Similarity=0.326 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEEC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP--TNGTILLN 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~--~~G~I~~~ 100 (605)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++
T Consensus 5 ~l~~~nl~~~~-----------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~ 67 (506)
T PRK13549 5 LLEMKNITKTF-----------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFE 67 (506)
T ss_pred eEEEeeeEEEe-----------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 69999999998 345799999999999999999999999999999999999986 89999999
Q ss_pred CeeCCcc----cccCceEEEcCCCCCCCCCCHHHHHHHHHhcC--C-CChhHHHHHHHHHHHHcCCcccccccccCCCCH
Q 007383 101 SSPIKPS----SFRKLSAYVPQHDACIPSLTVYETFLFSARLL--V-PKTSQIDTIITVLLTELRLAHLASTRLAHNLSG 173 (605)
Q Consensus 101 g~~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~--~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSg 173 (605)
|+++... ..++.+|||+|++.+++.+||+||+.+..... . .+.++..++++++++.+|+.+..++.+ ++|||
T Consensus 68 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSg 146 (506)
T PRK13549 68 GEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-GNLGL 146 (506)
T ss_pred CEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-hhCCH
Confidence 9987432 23467999999999999999999999875432 1 123345567899999999987777774 99999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
||||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++||++++|++|++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLN-EVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeee
Confidence 999999999999999999999999999999999999999999975 4889999999998 47889999999999999999
Q ss_pred cChhhH
Q 007383 254 GTLASL 259 (605)
Q Consensus 254 g~~~~~ 259 (605)
|+++++
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 998765
No 189
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4e-43 Score=345.75 Aligned_cols=190 Identities=29% Similarity=0.428 Sum_probs=167.4
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCC---c----ccccCceEEEcCCCCCCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK---P----SSFRKLSAYVPQHDACIP 124 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~---~----~~~~~~i~yv~Q~~~l~~ 124 (605)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. . ...++.++|++|++.+++
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 356999999999999999999999999999999999999999999999999853 1 124567999999999999
Q ss_pred CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007383 125 SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSR 204 (605)
Q Consensus 125 ~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~ 204 (605)
.+|++||+.+.....+....+..++++++++.+|+.+..++.+ .+||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~ 168 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI-YELSGGEQQRVALARAILKDPPLILADEPTGSLDPK 168 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh-hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHH
Confidence 9999999998754333333445677899999999988887775 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
++..+.+.|++++++ |.|||++||+++ ..+.+|++++|
T Consensus 169 ~~~~l~~~l~~~~~~-~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 169 NRDEVLDLLLELNDE-GKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999764 889999999986 34689999875
No 190
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-43 Score=354.04 Aligned_cols=215 Identities=23% Similarity=0.394 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~I 97 (605)
--+++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|
T Consensus 5 ~~~~~~l~~~~-----------------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 67 (251)
T PRK14244 5 HASVKNLNLWY-----------------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67 (251)
T ss_pred EEEeeeEEEEE-----------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE
Confidence 35789999988 24579999999999999999999999999999999999986 479999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHcCCcc----ccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP--KTSQIDTIITVLLTELRLAH----LASTR 166 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~v~~~l~~l~L~~----~~~~~ 166 (605)
.++|+++.. ..+++.++|++|++.+++. ||+||+.+.....+. ..++.++.++++++.+|+.+ ..++.
T Consensus 68 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (251)
T PRK14244 68 DIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDS 146 (251)
T ss_pred EECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcC
Confidence 999988632 1356789999999988876 999999887433221 22344566788999999964 23445
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|++++|+
T Consensus 147 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d~i~~l~ 222 (251)
T PRK14244 147 -AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMK-QAKKVSDRVAFFQ 222 (251)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhcCEEEEEE
Confidence 48999999999999999999999999999999999999999999999985 3 789999999998 5788999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|++++.|+++++
T Consensus 223 ~G~i~~~~~~~~~ 235 (251)
T PRK14244 223 SGRIVEYNTTQEI 235 (251)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998766
No 191
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=352.83 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~I 97 (605)
.|+++|++++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|
T Consensus 4 ~l~~~~l~~~~~-----------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v 66 (251)
T PRK14251 4 IISAKDVHLSYG-----------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI 66 (251)
T ss_pred eEEEEeeEEEEC-----------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE
Confidence 589999999982 3569999999999999999999999999999999999987 479999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc----ccccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA----HLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~~~ 167 (605)
.++|+++.. ...++.++|++|++.+++ .||+||+.+.....+. ..+..+++++++++.+++. ...++.
T Consensus 67 ~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 144 (251)
T PRK14251 67 KFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRN- 144 (251)
T ss_pred EECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccC-
Confidence 999998632 234677999999998886 7999999886543222 2223446678889999984 334555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|++
T Consensus 145 ~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d~i~~l~~ 221 (251)
T PRK14251 145 AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQ-QAGRISDQTAFLMN 221 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHH-HHHhhcCEEEEEEC
Confidence 489999999999999999999999999999999999999999999999953 589999999998 47889999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|+++..|+.+++
T Consensus 222 G~i~~~~~~~~~ 233 (251)
T PRK14251 222 GDLIEAGPTEEM 233 (251)
T ss_pred CEEEEeCCHHHH
Confidence 999999998776
No 192
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=355.89 Aligned_cols=216 Identities=26% Similarity=0.394 Sum_probs=186.3
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~ 96 (605)
.+|+++|+++.+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+
T Consensus 24 ~~l~~~nl~~~~~-----------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~ 86 (272)
T PRK14236 24 TALEVRNLNLFYG-----------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGE 86 (272)
T ss_pred cEEEEEEEEEEEC-----------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceE
Confidence 3699999999982 35699999999999999999999999999999999999873 8999
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----ccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LASTR 166 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~ 166 (605)
|.++|+++.. ..+++.++|++|++.+++. |++||+.+.....+. ..+..+++++++++.+++.+ ..++.
T Consensus 87 i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 165 (272)
T PRK14236 87 IRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHEN 165 (272)
T ss_pred EEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCC
Confidence 9999998742 2356789999999988886 999999887544322 22334566888899998853 34555
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|+
T Consensus 166 -~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 166 -AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred -cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 489999999999999999999999999999999999999999999999974 579999999997 4788999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|+++..|+++++
T Consensus 242 ~G~i~~~g~~~~~ 254 (272)
T PRK14236 242 MGKLVEYGDTDTL 254 (272)
T ss_pred CCEEEecCCHHHH
Confidence 9999999998765
No 193
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-43 Score=378.77 Aligned_cols=215 Identities=30% Similarity=0.479 Sum_probs=186.7
Q ss_pred CCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007383 19 LKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL 98 (605)
Q Consensus 19 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~ 98 (605)
...+.++.+|+++.|+ +++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|++|+|.
T Consensus 316 ~~~~ei~~~~l~~~y~----------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~ 379 (559)
T COG4988 316 EPPIEISLENLSFRYP----------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379 (559)
T ss_pred CCCceeeecceEEecC----------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence 3456677779999995 234799999999999999999999999999999999999999999999
Q ss_pred ECCeeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccc------cc--
Q 007383 99 LNSSPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAST------RL-- 167 (605)
Q Consensus 99 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~------~~-- 167 (605)
+||.+.. ...|+++++||+|++.+++. |++||+.++.. +..++.+.++++..|+.+..+. .+
T Consensus 380 vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~------~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 380 VNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP------DASDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC------cCCHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 9998764 56799999999999999986 99999988632 1234556777777777654433 22
Q ss_pred -cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 168 -AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 168 -~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
.++|||||+|||++||||+.+++++++||||++||.++.+.|.+.|.++++ ++|++++||++. ...-+|+|++|+
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChH--HHhcCCEEEEec
Confidence 467999999999999999999999999999999999999999999999985 489999999986 467799999999
Q ss_pred CCeEEEecChhhHH
Q 007383 247 KGSVVHHGTLASLE 260 (605)
Q Consensus 247 ~G~iv~~g~~~~~~ 260 (605)
+|+++..|..+++.
T Consensus 529 ~G~l~~~g~~~~L~ 542 (559)
T COG4988 529 NGRLVEQGTHEELS 542 (559)
T ss_pred CCceeccCCHHHHh
Confidence 99999999999874
No 194
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=352.77 Aligned_cols=215 Identities=25% Similarity=0.405 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~I 97 (605)
+++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|
T Consensus 3 ~l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 65 (249)
T PRK14253 3 KFNIENLDLFYG-----------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65 (249)
T ss_pred eEEEeccEEEEC-----------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence 589999999882 35699999999999999999999999999999999999986 59999
Q ss_pred EECCeeCC----cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----ccccccc
Q 007383 98 LLNSSPIK----PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LASTRLA 168 (605)
Q Consensus 98 ~~~g~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~~~ 168 (605)
.++|.++. ....++.++|++|++.+++ .||.||+.+....... .++..++++.+.++.+++.+ ..++. +
T Consensus 66 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 143 (249)
T PRK14253 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH-A 143 (249)
T ss_pred EECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcC-c
Confidence 99998863 1245678999999998887 8999999887543221 22334566778888888743 34455 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
.+|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|
T Consensus 144 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~~~d~i~~l~~G 220 (249)
T PRK14253 144 FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQ-QARRISDRTAFFLMG 220 (249)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHH-HHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999964 489999999997 588999999999999
Q ss_pred eEEEecChhhH
Q 007383 249 SVVHHGTLASL 259 (605)
Q Consensus 249 ~iv~~g~~~~~ 259 (605)
+++..|+++++
T Consensus 221 ~i~~~g~~~~~ 231 (249)
T PRK14253 221 ELVEHDDTQVI 231 (249)
T ss_pred EEEEeCCHHHH
Confidence 99999988765
No 195
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=355.90 Aligned_cols=218 Identities=25% Similarity=0.378 Sum_probs=188.0
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----Ccc
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNG 95 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G 95 (605)
...|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|
T Consensus 19 ~~~l~i~nl~~~~-----------------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G 81 (276)
T PRK14271 19 APAMAAVNLTLGF-----------------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG 81 (276)
T ss_pred CcEEEEeeEEEEE-----------------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCce
Confidence 4479999999999 346799999999999999999999999999999999999985 699
Q ss_pred EEEECCeeCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCcc----ccccc
Q 007383 96 TILLNSSPIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLAH----LASTR 166 (605)
Q Consensus 96 ~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~~----~~~~~ 166 (605)
+|.++|.++.. ..+++.++|++|++.+++ .|++||+.+...... .+.++.++++.++++.+++.+ ..++.
T Consensus 82 ~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~ 160 (276)
T PRK14271 82 DVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDS 160 (276)
T ss_pred EEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCC
Confidence 99999998742 235678999999998887 799999988654322 233344556778899999864 23444
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|+
T Consensus 161 -~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~dri~~l~ 236 (276)
T PRK14271 161 -PFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLA-QAARISDRAALFF 236 (276)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 489999999999999999999999999999999999999999999999974 479999999997 5889999999999
Q ss_pred CCeEEEecChhhHH
Q 007383 247 KGSVVHHGTLASLE 260 (605)
Q Consensus 247 ~G~iv~~g~~~~~~ 260 (605)
+|+++..|+++++.
T Consensus 237 ~G~i~~~g~~~~~~ 250 (276)
T PRK14271 237 DGRLVEEGPTEQLF 250 (276)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988763
No 196
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-43 Score=389.74 Aligned_cols=217 Identities=26% Similarity=0.373 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|++++| +.+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+
T Consensus 5 ~l~~~~l~~~~-----------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 67 (510)
T PRK09700 5 YISMAGIGKSF-----------------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI 67 (510)
T ss_pred eEEEeeeEEEc-----------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCE
Confidence 69999999998 2457999999999999999999999999999999999999999999999999
Q ss_pred eCCcc----cccCceEEEcCCCCCCCCCCHHHHHHHHHhc----CCC---ChhHHHHHHHHHHHHcCCcccccccccCCC
Q 007383 103 PIKPS----SFRKLSAYVPQHDACIPSLTVYETFLFSARL----LVP---KTSQIDTIITVLLTELRLAHLASTRLAHNL 171 (605)
Q Consensus 103 ~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~----~~~---~~~~~~~~v~~~l~~l~L~~~~~~~~~~~L 171 (605)
++... ..++.++||+|++.+++.+||+||+.++... .+. +.++.+++++++++.+|+.+..++.+ ++|
T Consensus 68 ~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~L 146 (510)
T PRK09700 68 NYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-ANL 146 (510)
T ss_pred ECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-hhC
Confidence 87431 1345799999999999999999999875421 111 12345567889999999988777774 999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||++ .+.++||++++|++|+++
T Consensus 147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLA-EIRRICDRYTVMKDGSSV 224 (510)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999865 899999999998 488899999999999999
Q ss_pred EecChhhH
Q 007383 252 HHGTLASL 259 (605)
Q Consensus 252 ~~g~~~~~ 259 (605)
+.|+++++
T Consensus 225 ~~g~~~~~ 232 (510)
T PRK09700 225 CSGMVSDV 232 (510)
T ss_pred eecchhhC
Confidence 99998765
No 197
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.9e-43 Score=398.76 Aligned_cols=216 Identities=31% Similarity=0.456 Sum_probs=183.6
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
.-.++++||+|.|.. .+..+|+|+|++|++||.+||+|+||||||||+|+|+|+++|++|+|.+|
T Consensus 469 ~g~I~~~nvsf~y~~---------------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 469 QGEIEFENVSFRYGP---------------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred CceEEEEEEEEEeCC---------------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 345999999999942 22479999999999999999999999999999999999999999999999
Q ss_pred CeeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---
Q 007383 101 SSPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL--- 167 (605)
Q Consensus 101 g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~--- 167 (605)
|.+++ ...+|+++|||+||+.+|.. |++||+.++.-.. + .+.+.+.++.-|..+. .++.+
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~--~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~ 606 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEA--T----DEEIIEAAQLAGAHEFIENLPMGYDTPVGEG 606 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHHHHhcccccccccccC
Confidence 99874 56789999999999999875 9999998763211 1 2333444444444322 23333
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
..+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|.++. +|+|+|+++|.++ ..+.+|||++|++
T Consensus 607 G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~--ti~~adrIiVl~~ 682 (709)
T COG2274 607 GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLS--TIRSADRIIVLDQ 682 (709)
T ss_pred CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccch--HhhhccEEEEccC
Confidence 56899999999999999999999999999999999999999999999996 4799999999997 5789999999999
Q ss_pred CeEEEecChhhHHHH
Q 007383 248 GSVVHHGTLASLETF 262 (605)
Q Consensus 248 G~iv~~g~~~~~~~~ 262 (605)
|+++.+|+.+|+.+.
T Consensus 683 Gkiv~~gs~~ell~~ 697 (709)
T COG2274 683 GKIVEQGSHEELLAQ 697 (709)
T ss_pred CceeccCCHHHHHHh
Confidence 999999999998653
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=353.70 Aligned_cols=215 Identities=25% Similarity=0.421 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~I 97 (605)
.|+++|+++.| +++.+|+|+|+++++||+++|+|+||||||||+|+|+|+++| ++|+|
T Consensus 7 ~l~~~~l~~~~-----------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i 69 (259)
T PRK14260 7 AIKVKDLSFYY-----------------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV 69 (259)
T ss_pred eEEEEEEEEEE-----------------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE
Confidence 58999999998 235699999999999999999999999999999999999885 58999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCc----ccccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLA----HLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~----~~~~~~~ 167 (605)
.++|+++.. ..+++.++|++|++.+++ .||+||+.+...... .++.+.+++++++++.+++. +..++.
T Consensus 70 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 147 (259)
T PRK14260 70 DFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKS- 147 (259)
T ss_pred EECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCC-
Confidence 999998742 234667999999998887 899999988754322 12334456778889999883 345555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe-
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS- 246 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~- 246 (605)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|+
T Consensus 148 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~i~~~~d~i~~l~~ 224 (259)
T PRK14260 148 ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQ-QATRVSDFTAFFST 224 (259)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCeEEEEec
Confidence 589999999999999999999999999999999999999999999999964 489999999998 5889999999998
Q ss_pred ----CCeEEEecChhhH
Q 007383 247 ----KGSVVHHGTLASL 259 (605)
Q Consensus 247 ----~G~iv~~g~~~~~ 259 (605)
+|++++.|+++++
T Consensus 225 ~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 225 DESRIGQMVEFGVTTQI 241 (259)
T ss_pred cCCCCceEEEeCCHHHH
Confidence 5999999999876
No 199
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-42 Score=387.57 Aligned_cols=213 Identities=26% Similarity=0.368 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 11 ~l~~~~l~~~~-----------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 73 (510)
T PRK15439 11 LLCARSISKQY-----------------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN 73 (510)
T ss_pred eEEEEeEEEEe-----------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 69999999998 2456999999999999999999999999999999999999999999999999
Q ss_pred eCCcc---c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 103 PIKPS---S-FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 103 ~~~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
++... . .++.+||++|++.+++.+||+||+.+.... ..+.+++++++++.+|+.+..++.+ ++||||||||
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qr 148 (510)
T PRK15439 74 PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSA-GSLEVADRQI 148 (510)
T ss_pred ECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCCh-hhCCHHHHHH
Confidence 87421 2 234699999999999999999999876321 2234567889999999988777774 9999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|++++.|++++
T Consensus 149 v~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence 99999999999999999999999999999999999999764 889999999998 4889999999999999999999877
Q ss_pred H
Q 007383 259 L 259 (605)
Q Consensus 259 ~ 259 (605)
+
T Consensus 227 ~ 227 (510)
T PRK15439 227 L 227 (510)
T ss_pred c
Confidence 5
No 200
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=356.94 Aligned_cols=219 Identities=23% Similarity=0.386 Sum_probs=184.6
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...|+++|++++|+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++
T Consensus 4 ~~~l~~~~l~~~~~----------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 67 (272)
T PRK15056 4 QAGIVVNDVTVTWR----------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISIL 67 (272)
T ss_pred hceEEEEeEEEEec----------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 34699999999983 23569999999999999999999999999999999999999999999999
Q ss_pred CeeCCcccccCceEEEcCCCCCC--CCCCHHHHHHHHHh----cCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHH
Q 007383 101 SSPIKPSSFRKLSAYVPQHDACI--PSLTVYETFLFSAR----LLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG 174 (605)
|+++.....++.++|++|++.+. ...+++|++.++.. .......+.+++++++++.+|+.+..++.+ .+||||
T Consensus 68 g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~LSgG 146 (272)
T PRK15056 68 GQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-GELSGG 146 (272)
T ss_pred CEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-ccCCHH
Confidence 99874322234699999997642 23478998875421 111122334556788999999988877774 999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|+++++ +|++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeec
Confidence 999999999999999999999999999999999999999999764 889999999997 588999999877 89999999
Q ss_pred ChhhH
Q 007383 255 TLASL 259 (605)
Q Consensus 255 ~~~~~ 259 (605)
+++++
T Consensus 224 ~~~~~ 228 (272)
T PRK15056 224 PTETT 228 (272)
T ss_pred CHHhc
Confidence 98775
No 201
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=355.77 Aligned_cols=215 Identities=25% Similarity=0.386 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~I 97 (605)
+|+++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |++|+|
T Consensus 24 ~l~~~~l~~~~~-----------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 86 (271)
T PRK14238 24 VFDTQNLNLWYG-----------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86 (271)
T ss_pred EEEEeeeEEEEC-----------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE
Confidence 699999999983 3469999999999999999999999999999999999987 699999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCC----cccccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRL----AHLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L----~~~~~~~~ 167 (605)
.++|+++.. ..+++.++|++|++.+++ .||+||+.+....... +.+..++.+.+.++.+++ .+..++.
T Consensus 87 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~- 164 (271)
T PRK14238 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN- 164 (271)
T ss_pred EECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcC-
Confidence 999998732 234678999999998887 4999999987543222 222234556777777754 3344555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++
T Consensus 165 ~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~i~~~~d~i~~l~~ 241 (271)
T PRK14238 165 AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQ-QAARISDKTAFFLN 241 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHH-HHHHhCCEEEEEEC
Confidence 589999999999999999999999999999999999999999999999964 589999999998 47889999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|+++..|+++++
T Consensus 242 G~i~~~g~~~~~ 253 (271)
T PRK14238 242 GYVNEYDDTDKI 253 (271)
T ss_pred CEEEEeCCHHHH
Confidence 999999998776
No 202
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=357.72 Aligned_cols=217 Identities=25% Similarity=0.405 Sum_probs=185.6
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCcc
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNG 95 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G 95 (605)
...|+++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|
T Consensus 37 ~~~l~~~~l~~~~~-----------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G 99 (286)
T PRK14275 37 KPHVVAKNFSIYYG-----------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG 99 (286)
T ss_pred ceEEEEeeeEEEEC-----------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCce
Confidence 34699999999982 3469999999999999999999999999999999999864 4999
Q ss_pred EEEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc----ccccc
Q 007383 96 TILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA----HLAST 165 (605)
Q Consensus 96 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~ 165 (605)
+|.++|+++.. ..+++.++|++|++.+++. ||.||+.+....... +....++++.++++.+++. +..++
T Consensus 100 ~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 178 (286)
T PRK14275 100 ALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDK 178 (286)
T ss_pred EEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhC
Confidence 99999988642 1356789999999988875 999999987543222 2233456778888888873 34455
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
. +..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|
T Consensus 179 ~-~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 179 N-ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred C-hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 6 499999999999999999999999999999999999999999999999964 589999999998 478899999999
Q ss_pred eCCeEEEecChhhH
Q 007383 246 SKGSVVHHGTLASL 259 (605)
Q Consensus 246 ~~G~iv~~g~~~~~ 259 (605)
++|+++..|+++++
T Consensus 255 ~~G~i~~~g~~~~~ 268 (286)
T PRK14275 255 YEGVLVEHAPTAQL 268 (286)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998876
No 203
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.9e-43 Score=376.40 Aligned_cols=225 Identities=26% Similarity=0.369 Sum_probs=199.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC----ccEEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT----NGTIL 98 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~----~G~I~ 98 (605)
.|+++||++.|... .+...+++||||++++||++||+|+|||||||+.++|.|++++. +|+|.
T Consensus 5 lL~V~nL~v~~~~~-------------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~ 71 (539)
T COG1123 5 LLEVENLTVEFATD-------------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71 (539)
T ss_pred eEEEeceEEEEecC-------------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE
Confidence 79999999999521 23457999999999999999999999999999999999999975 89999
Q ss_pred ECCeeCC---cc---c-ccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCcccccc-cc
Q 007383 99 LNSSPIK---PS---S-FRKLSAYVPQHD--ACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLAHLAST-RL 167 (605)
Q Consensus 99 ~~g~~~~---~~---~-~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~-~~ 167 (605)
++|+++. .. . ..+.|+|+||++ .+.|-+|+.+.+.-....+. .+.++.++++.++++.+||.+.... .+
T Consensus 72 ~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~y 151 (539)
T COG1123 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRY 151 (539)
T ss_pred ECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccC
Confidence 9998753 11 2 236799999997 47788999999988777743 4577889999999999999876653 45
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
|++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.++.|.++|++|||+.. +.++||||++|++
T Consensus 152 PheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~ 230 (539)
T COG1123 152 PHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK 230 (539)
T ss_pred CcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEEC
Confidence 899999999999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred CeEEEecChhhHHH
Q 007383 248 GSVVHHGTLASLET 261 (605)
Q Consensus 248 G~iv~~g~~~~~~~ 261 (605)
|++++.|+++++.+
T Consensus 231 G~iVE~G~~~~i~~ 244 (539)
T COG1123 231 GEIVETGPTEEILS 244 (539)
T ss_pred CEEEEecCHHHHHh
Confidence 99999999999853
No 204
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=350.65 Aligned_cols=215 Identities=27% Similarity=0.443 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-----ccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT-----NGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~-----~G~I 97 (605)
.|+++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|
T Consensus 4 ~l~~~~l~~~~~-----------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 66 (251)
T PRK14249 4 KIKIRGVNFFYH-----------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV 66 (251)
T ss_pred eEEEEEEEEEEC-----------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE
Confidence 588999999982 356999999999999999999999999999999999999986 6999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHcCCc----ccccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPK-TSQIDTIITVLLTELRLA----HLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~l~L~----~~~~~~~ 167 (605)
.++|+++.. ..+++.++|++|++.+++. |++||+.+.....+.. .++.++.++++++.+++. +..++.
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 144 (251)
T PRK14249 67 LLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKS- 144 (251)
T ss_pred EECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCC-
Confidence 999998642 2456789999999988875 9999999875433222 223445677788888874 334555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.++|++++ + ++|||++||+++ ++.+.+|++++|++
T Consensus 145 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~-~~~~~~d~i~~l~~ 221 (251)
T PRK14249 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQ-QAARASDWTGFLLT 221 (251)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHhhCCEEEEEeC
Confidence 58999999999999999999999999999999999999999999999984 3 689999999998 48889999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|++++.|+++++
T Consensus 222 G~i~~~~~~~~~ 233 (251)
T PRK14249 222 GDLVEYGRTGEI 233 (251)
T ss_pred CeEEEeCCHHHH
Confidence 999999998876
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=394.10 Aligned_cols=231 Identities=22% Similarity=0.273 Sum_probs=195.2
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||++.|..... .+ .+..+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~----~~--~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g 385 (623)
T PRK10261 312 PILQVRNLVTRFPLRSG----LL--NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG 385 (623)
T ss_pred ceEEEeeeEEEEcCCCc----cc--cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECC
Confidence 46999999999842100 00 0001235699999999999999999999999999999999999999999999999
Q ss_pred eeCCc------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc-ccccccccCCC
Q 007383 102 SPIKP------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA-HLASTRLAHNL 171 (605)
Q Consensus 102 ~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~L 171 (605)
+++.. ..+++.++||+|++ .+++.+||.|++.+....... ..++.++++.++++.+||. +..++. +++|
T Consensus 386 ~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~L 464 (623)
T PRK10261 386 QRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEF 464 (623)
T ss_pred EECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccC
Confidence 98742 12466899999997 588999999999986543322 2344567889999999996 556666 5999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++.|.|||++|||++ .+.++||++++|++|+++
T Consensus 465 SgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIV 543 (623)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999998766899999999998 588999999999999999
Q ss_pred EecChhhHH
Q 007383 252 HHGTLASLE 260 (605)
Q Consensus 252 ~~g~~~~~~ 260 (605)
+.|+++++.
T Consensus 544 ~~g~~~~i~ 552 (623)
T PRK10261 544 EIGPRRAVF 552 (623)
T ss_pred EecCHHHHh
Confidence 999988873
No 206
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=350.97 Aligned_cols=215 Identities=25% Similarity=0.387 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~I 97 (605)
+|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ++|+|
T Consensus 6 ~i~~~~l~~~~-----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 68 (253)
T PRK14261 6 ILSTKNLNLWY-----------------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI 68 (253)
T ss_pred eEEEeeeEEEE-----------------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence 69999999998 245699999999999999999999999999999999999753 48999
Q ss_pred EECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----cccccc
Q 007383 98 LLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~~ 167 (605)
.++|+++.. ...++.++|++|++.+++. ||+||+.+....... ...+.++.+.++++.+++.+ ..++.
T Consensus 69 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 146 (253)
T PRK14261 69 LYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDS- 146 (253)
T ss_pred EECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcC-
Confidence 999998742 2345679999999988875 999999987654322 22344567788888888743 34555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|++
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~-~~~~~~d~v~~l~~ 223 (253)
T PRK14261 147 ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQ-QAARVSDYTGFMYL 223 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHH-HHHhhCCEEEEEEC
Confidence 489999999999999999999999999999999999999999999999964 479999999997 47889999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|+++..|+++++
T Consensus 224 G~i~~~g~~~~~ 235 (253)
T PRK14261 224 GKLIEFDKTTQI 235 (253)
T ss_pred CEEEEcCCHHHH
Confidence 999999998776
No 207
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-43 Score=383.77 Aligned_cols=216 Identities=31% Similarity=0.510 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++|+||++.|+.+ ...+||+|+||+++|||.+||+||||+||||+.++|-.++.|++|+|.+||+
T Consensus 465 ~IeF~~VsFaYP~R--------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTR--------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred eEEEEEeeeecCCC--------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 59999999999742 4578999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHH-----HHHHHHcCCcccccccc---cCCC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTII-----TVLLTELRLAHLASTRL---AHNL 171 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v-----~~~l~~l~L~~~~~~~~---~~~L 171 (605)
|+. ...+|++||+|.|+|.+|.. ||+|||.|+.. ..+.++.++.+ .+.+ .++.+-.||.+ ..+|
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHH--HhCccccccccCCccccc
Confidence 974 46688999999999999976 99999999865 22333332222 2222 24455667776 4589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
|||||||++|||||++||+||||||.||+||+++...+-+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|+++
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLS--TVRHADQIVVIDKGRVV 681 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhh--HhhhccEEEEEcCCeEE
Confidence 99999999999999999999999999999999999999999999874 589999999997 46889999999999999
Q ss_pred EecChhhHHH
Q 007383 252 HHGTLASLET 261 (605)
Q Consensus 252 ~~g~~~~~~~ 261 (605)
+.|+.+|+.+
T Consensus 682 E~G~h~eLl~ 691 (716)
T KOG0058|consen 682 EMGTHDELLS 691 (716)
T ss_pred ecccHHHHhh
Confidence 9999888743
No 208
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.5e-42 Score=346.73 Aligned_cols=211 Identities=29% Similarity=0.434 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||++.+ +.+.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 6 ~~i~~~~l~~~~-----------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 68 (225)
T PRK10247 6 PLLQLQNVGYLA-----------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68 (225)
T ss_pred ceEEEeccEEee-----------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECC
Confidence 369999999988 235699999999999999999999999999999999999999999999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHH
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERR 177 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerq 177 (605)
+++.. ...++.++|++|++.+++ .||+||+.+.....+.. ..+++++++++.+++. ...++. +++|||||||
T Consensus 69 ~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~~q 144 (225)
T PRK10247 69 EDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPDTILTKN-IAELSGGEKQ 144 (225)
T ss_pred EEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCChHHhcCC-cccCCHHHHH
Confidence 87642 235677999999988887 49999998865443221 2245678899999995 456666 4999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe-CCeEEEecC
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS-KGSVVHHGT 255 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~-~G~iv~~g~ 255 (605)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||++||+++. + +.+|++++|+ ++..+.+|.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999999999999987668899999999974 5 5699999995 454445554
No 209
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-42 Score=349.07 Aligned_cols=216 Identities=28% Similarity=0.415 Sum_probs=183.2
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC--C---CccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS--P---TNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~--~---~~G~ 96 (605)
.+|+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+
T Consensus 4 ~~l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 66 (252)
T PRK14255 4 KIITSSDVHLFYG-----------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGN 66 (252)
T ss_pred ceEEEEeEEEEEC-----------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccE
Confidence 3689999999982 3569999999999999999999999999999999999875 4 5999
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCc----cccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLA----HLASTR 166 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~----~~~~~~ 166 (605)
|.++|+++.. ...++.++|++|++.+++ .||+||+.+....... ..+..++++.+.++.+++. +..++.
T Consensus 67 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~ 145 (252)
T PRK14255 67 VSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHES 145 (252)
T ss_pred EEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcC
Confidence 9999998731 234678999999998887 6999999987543221 2222345667778888763 334455
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|+
T Consensus 146 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 -ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 589999999999999999999999999999999999999999999999964 479999999998 5888999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|+++..|++.+.
T Consensus 222 ~G~i~~~~~~~~~ 234 (252)
T PRK14255 222 TGNLIEFADTKQM 234 (252)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999988776
No 210
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-42 Score=341.85 Aligned_cols=203 Identities=20% Similarity=0.288 Sum_probs=179.2
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++|+++++. ++.+++|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~~-----------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 72 (214)
T PRK13543 10 PLLAAHALAFSRN-----------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG 72 (214)
T ss_pred ceEEEeeEEEecC-----------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECC
Confidence 3699999999882 35699999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+++.....++.++|++|++.+++.+|++||+.+.....+. ..++.++++++.+++.+..++.+ ..||||||||++|
T Consensus 73 ~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~l 148 (214)
T PRK13543 73 KTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLV-RQLSAGQKKRLAL 148 (214)
T ss_pred EEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCCh-hhCCHHHHHHHHH
Confidence 9875434456799999999899989999999887543221 23456778899999988777774 9999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
|++++.+|++++|||||+|||+.++..+.+.|++++++ |.|||++|||++ ++.+++|++++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999999999999999764 789999999998 58999999999863
No 211
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.4e-42 Score=349.47 Aligned_cols=214 Identities=28% Similarity=0.470 Sum_probs=175.9
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.|.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 i~~~~l~~~~~~---------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 65 (237)
T cd03252 1 ITFEHVRFRYKP---------------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD 65 (237)
T ss_pred CEEEEEEEecCC---------------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCee
Confidence 468999998831 23569999999999999999999999999999999999999999999999988
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHc--CCcccccccccCCCCH
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQID-----TIITVLLTEL--RLAHLASTRLAHNLSG 173 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~~~~~LSg 173 (605)
+.. ..+++.++|++|++.+++ .||.||+.+.... ....+.. ....+.++.+ ++....+.. +.+|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~LSg 141 (237)
T cd03252 66 LALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPG--MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-GAGLSG 141 (237)
T ss_pred hHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-CCcCCH
Confidence 642 345677999999988775 6999999874321 1111111 1123444544 454445555 489999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++ + |+|||++||+++. + +.+|++++|++|++++.
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQ 217 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999996 3 7899999999974 5 56999999999999999
Q ss_pred cChhhHH
Q 007383 254 GTLASLE 260 (605)
Q Consensus 254 g~~~~~~ 260 (605)
|+++++.
T Consensus 218 ~~~~~~~ 224 (237)
T cd03252 218 GSHDELL 224 (237)
T ss_pred cCHHHHH
Confidence 9988764
No 212
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-42 Score=393.20 Aligned_cols=211 Identities=29% Similarity=0.442 Sum_probs=178.8
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++||++.+. +++.+|+|+|+++++||.+||+||||||||||+++|+|++ |++|+|.+||
T Consensus 348 ~~i~~~~vsf~~~----------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g 410 (588)
T PRK11174 348 VTIEAEDLEILSP----------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKING 410 (588)
T ss_pred ceEEEEeeEEecc----------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECC
Confidence 3599999997662 2356999999999999999999999999999999999999 8999999999
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-------cccccc---c
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-------LASTRL---A 168 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~~---~ 168 (605)
+++. ...+|+.++||+|++.+|+. |++||+.++..- .+ +++++++++..++++ -.|+.+ .
T Consensus 411 ~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~--~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 411 IELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNPD--AS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred EecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCCC--CC----HHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9874 45688999999999999975 999999986310 12 234455555555433 223433 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~--~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLE--DLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChH--HHHhCCEEEEEeCC
Confidence 5799999999999999999999999999999999999999999999985 3689999999996 46779999999999
Q ss_pred eEEEecChhhHH
Q 007383 249 SVVHHGTLASLE 260 (605)
Q Consensus 249 ~iv~~g~~~~~~ 260 (605)
+++..|+.+++.
T Consensus 560 ~i~e~G~~~eL~ 571 (588)
T PRK11174 560 QIVQQGDYAELS 571 (588)
T ss_pred eEeecCCHHHHH
Confidence 999999998874
No 213
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.6e-42 Score=385.69 Aligned_cols=220 Identities=27% Similarity=0.371 Sum_probs=189.9
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEC-
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART--SPTNGTILLN- 100 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~--~~~~G~I~~~- 100 (605)
|+++|++++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~-----------------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~ 63 (520)
T TIGR03269 1 IEVKNLTKKF-----------------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHV 63 (520)
T ss_pred CEEEEEEEEE-----------------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEec
Confidence 5789999998 2357999999999999999999999999999999999997 6999999997
Q ss_pred ----------------------CeeCC----------c---ccccCceEEEcCC-CCCCCCCCHHHHHHHHHhcCCCChh
Q 007383 101 ----------------------SSPIK----------P---SSFRKLSAYVPQH-DACIPSLTVYETFLFSARLLVPKTS 144 (605)
Q Consensus 101 ----------------------g~~~~----------~---~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~ 144 (605)
|.++. . ..+++.++|++|+ +.+++.+||+||+.+.....+.+.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~ 143 (520)
T TIGR03269 64 ALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGK 143 (520)
T ss_pred cccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHH
Confidence 22210 0 1235679999997 6788889999999987654333344
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 007383 145 QIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTV 224 (605)
Q Consensus 145 ~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~ti 224 (605)
+.++++.++++.+||++..++. +++|||||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++.|+||
T Consensus 144 ~~~~~~~~~l~~~gl~~~~~~~-~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 222 (520)
T TIGR03269 144 EAVGRAVDLIEMVQLSHRITHI-ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM 222 (520)
T ss_pred HHHHHHHHHHHHcCChhhhhcC-cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 5567899999999998877777 499999999999999999999999999999999999999999999999976668999
Q ss_pred EEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHHH
Q 007383 225 ILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETF 262 (605)
Q Consensus 225 i~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~~ 262 (605)
|++|||++ .+.++||++++|++|++++.|+++++.+.
T Consensus 223 iivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 223 VLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99999998 47889999999999999999998877543
No 214
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.6e-42 Score=338.91 Aligned_cols=200 Identities=27% Similarity=0.405 Sum_probs=175.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++|+++++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~l~~~~-----------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~ 63 (204)
T PRK13538 1 MLEARNLACER-----------------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGE 63 (204)
T ss_pred CeEEEEEEEEE-----------------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 47899999998 2357999999999999999999999999999999999999999999999999
Q ss_pred eCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 103 PIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
++.. ..+++.++|++|++.+++.+|+.||+.+.....+. +.+++++++++.+|+.+..++. +++||||||||++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~-~~~LS~G~~qrl~ 139 (204)
T PRK13538 64 PIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVP-VRQLSAGQQRRVA 139 (204)
T ss_pred EcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCC-hhhcCHHHHHHHH
Confidence 8742 33567799999999999999999999987644321 2346788999999998777777 4999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
||++|+++|++++|||||+|||+.++..+.+.|+++++ .|.|||++||+++. +.+..+|++.+
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhh-hccCCceEEec
Confidence 99999999999999999999999999999999999975 47899999999984 66766777766
No 215
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=351.63 Aligned_cols=215 Identities=24% Similarity=0.377 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~I 97 (605)
+|+++||+++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|
T Consensus 10 ~l~i~~v~~~~~-----------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 72 (264)
T PRK14243 10 VLRTENLNVYYG-----------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72 (264)
T ss_pred EEEEeeeEEEEC-----------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE
Confidence 699999999982 3569999999999999999999999999999999999976 379999
Q ss_pred EECCeeCC-----cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc----ccccccc
Q 007383 98 LLNSSPIK-----PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH----LASTRLA 168 (605)
Q Consensus 98 ~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~~ 168 (605)
.++|+++. ...+++.++|++|++.+++ .||.||+.+....... ..+.+++++++++.+++.+ ..++. +
T Consensus 73 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~-~ 149 (264)
T PRK14243 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGY-KGDMDELVERSLRQAALWDEVKDKLKQS-G 149 (264)
T ss_pred EECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCc-chHHHHHHHHHHHHhCchhhHHHHhcCC-c
Confidence 99998863 1235677999999998887 4999999887543211 1233456677788888742 34455 5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe--
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS-- 246 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~-- 246 (605)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|+
T Consensus 150 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~-~~~~~~d~v~~l~~~ 226 (264)
T PRK14243 150 LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQ-QAARVSDMTAFFNVE 226 (264)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEecc
Confidence 89999999999999999999999999999999999999999999999964 479999999998 5899999999998
Q ss_pred -------CCeEEEecChhhHH
Q 007383 247 -------KGSVVHHGTLASLE 260 (605)
Q Consensus 247 -------~G~iv~~g~~~~~~ 260 (605)
+|++++.|+++++.
T Consensus 227 ~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 227 LTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred cccccccCceEEEeCCHHHHH
Confidence 79999999988873
No 216
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=9.5e-42 Score=346.55 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=184.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSAR--TSPTNGTILL 99 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~--~~~~~G~I~~ 99 (605)
.+|+++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+ ++|++|+|.+
T Consensus 6 ~~l~~~~l~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~ 68 (252)
T CHL00131 6 PILEIKNLHASVN-----------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF 68 (252)
T ss_pred ceEEEEeEEEEeC-----------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEE
Confidence 3699999999882 35699999999999999999999999999999999998 5789999999
Q ss_pred CCeeCCc---ccccC-ceEEEcCCCCCCCCCCHHHHHHHHHhcC----C---CChhHHHHHHHHHHHHcCCc-ccccccc
Q 007383 100 NSSPIKP---SSFRK-LSAYVPQHDACIPSLTVYETFLFSARLL----V---PKTSQIDTIITVLLTELRLA-HLASTRL 167 (605)
Q Consensus 100 ~g~~~~~---~~~~~-~i~yv~Q~~~l~~~lTv~e~l~~~~~~~----~---~~~~~~~~~v~~~l~~l~L~-~~~~~~~ 167 (605)
+|+++.. ...++ .++|++|++.+++.+|+.|++.+..... . ....+..+++.++++.+|+. ...++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 148 (252)
T CHL00131 69 KGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV 148 (252)
T ss_pred CCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccc
Confidence 9998742 22222 4889999999999999999998764321 0 01123345678899999997 3556664
Q ss_pred cC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc-CCeEEEE
Q 007383 168 AH-NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST-IDRILLL 245 (605)
Q Consensus 168 ~~-~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~d~v~~l 245 (605)
. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +... +|++++|
T Consensus 149 -~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~-~~~~~~d~i~~l 225 (252)
T CHL00131 149 -NEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRL-LDYIKPDYVHVM 225 (252)
T ss_pred -ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-HHhhhCCEEEEE
Confidence 5 5999999999999999999999999999999999999999999999975 47899999999874 6665 8999999
Q ss_pred eCCeEEEecChhhH
Q 007383 246 SKGSVVHHGTLASL 259 (605)
Q Consensus 246 ~~G~iv~~g~~~~~ 259 (605)
++|++++.|+++.+
T Consensus 226 ~~G~i~~~~~~~~~ 239 (252)
T CHL00131 226 QNGKIIKTGDAELA 239 (252)
T ss_pred eCCEEEEecChhhh
Confidence 99999999998744
No 217
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-44 Score=333.72 Aligned_cols=219 Identities=28% Similarity=0.408 Sum_probs=202.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++||+++| +++.+|+|+|.++++|.+++|+|||||||||||.+++.+++.++|+|+++|.
T Consensus 1 MI~i~nv~K~y-----------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~ 63 (252)
T COG4604 1 MITIENVSKSY-----------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGL 63 (252)
T ss_pred CeeehhhhHhh-----------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeee
Confidence 47899999998 5789999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL--VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~--~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
++. .+.+.+.++.+-|+..+...+||+|-+.|+.--+ ++..++.+..+++.++.++|++..|+.. .+|||||||
T Consensus 64 ~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-d~LSGGQrQ 142 (252)
T COG4604 64 ELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-DELSGGQRQ 142 (252)
T ss_pred ecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH-Hhcccchhh
Confidence 985 3557788899999999999999999999985443 3456678889999999999999998885 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|.-||..++++.+.++||||.++||-..+.++++.|++++++-|+||+++.||.+. +..++|+|+-|++|+++..|+++
T Consensus 143 RAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ 221 (252)
T COG4604 143 RAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPD 221 (252)
T ss_pred hhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHH
Confidence 99999999999999999999999999999999999999999999999999999996 78899999999999999999999
Q ss_pred hHH
Q 007383 258 SLE 260 (605)
Q Consensus 258 ~~~ 260 (605)
++.
T Consensus 222 eii 224 (252)
T COG4604 222 EII 224 (252)
T ss_pred Hhc
Confidence 974
No 218
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-43 Score=326.52 Aligned_cols=218 Identities=27% Similarity=0.397 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++|+.+.| +...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+|+.|+|.+||
T Consensus 5 ~~l~v~dlHK~~-----------------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~g 67 (256)
T COG4598 5 NALEVEDLHKRY-----------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNG 67 (256)
T ss_pred cceehhHHHhhc-----------------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECC
Confidence 348888888887 677899999999999999999999999999999999999999999999999
Q ss_pred eeCCc----------------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCccccc
Q 007383 102 SPIKP----------------SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLAS 164 (605)
Q Consensus 102 ~~~~~----------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~ 164 (605)
+.+.. ..+|.+.|+|+|+.++++.+||.||+.-+.-- ++.++.+..++.+.+|+++|+.+..+
T Consensus 68 eei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~ 147 (256)
T COG4598 68 EEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD 147 (256)
T ss_pred eEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh
Confidence 87621 12455689999999999999999999876443 66688888999999999999998888
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 165 TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 165 ~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
.. |..|||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++++++ |+|.+++||.+.. ..+...+|++
T Consensus 148 ~Y-P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~F-AR~Vss~v~f 224 (256)
T COG4598 148 AY-PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGF-ARDVSSHVIF 224 (256)
T ss_pred cC-ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhH-HHhhhhheEE
Confidence 55 6999999999999999999999999999999999999999999999999975 8999999999996 7889999999
Q ss_pred EeCCeEEEecChhhH
Q 007383 245 LSKGSVVHHGTLASL 259 (605)
Q Consensus 245 l~~G~iv~~g~~~~~ 259 (605)
|++|.|-+.|+|+++
T Consensus 225 Lh~G~iEE~G~P~qv 239 (256)
T COG4598 225 LHQGKIEEEGPPEQV 239 (256)
T ss_pred eecceecccCChHHH
Confidence 999999999999987
No 219
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=351.67 Aligned_cols=217 Identities=24% Similarity=0.354 Sum_probs=183.7
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----Ccc
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNG 95 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G 95 (605)
..+|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ++|
T Consensus 18 ~~~l~~~nl~~~~-----------------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G 80 (274)
T PRK14265 18 HSVFEVEGVKVFY-----------------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEG 80 (274)
T ss_pred CceEEEeeEEEEe-----------------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCc
Confidence 3479999999998 235699999999999999999999999999999999999863 699
Q ss_pred EEEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc----cccccc
Q 007383 96 TILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA----HLASTR 166 (605)
Q Consensus 96 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~ 166 (605)
+|.++|+++.. ..+++.++|++|++.+++. ||.||+.+....... ..+.++.+++.++.+++. +..++.
T Consensus 81 ~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 81 RLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGY-KGNLDELVEDSLRRAAIWEEVKDKLKEK 158 (274)
T ss_pred eEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCc-hHHHHHHHHHHHHHcccchhhHHHhcCC
Confidence 99999988632 2356789999999988875 999999886543211 112334567778888763 334555
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++||++ ++.+++|++++|+
T Consensus 159 -~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~ 234 (274)
T PRK14265 159 -GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQ-QASRVADWTAFFN 234 (274)
T ss_pred -cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 489999999999999999999999999999999999999999999999963 589999999998 5889999999998
Q ss_pred ---------CCeEEEecChhhHH
Q 007383 247 ---------KGSVVHHGTLASLE 260 (605)
Q Consensus 247 ---------~G~iv~~g~~~~~~ 260 (605)
+|++++.|+++++.
T Consensus 235 ~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 235 TEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred cccccccccCceEEEeCCHHHHH
Confidence 79999999998873
No 220
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.2e-42 Score=335.18 Aligned_cols=191 Identities=49% Similarity=0.766 Sum_probs=167.8
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART--SPTNGTILL 99 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~--~~~~G~I~~ 99 (605)
+.|+++|+++.|+.. +....+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|++|+|.+
T Consensus 2 ~~l~~~~ls~~~~~~-----------~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~ 70 (194)
T cd03213 2 VTLSFRNLTVTVKSS-----------PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI 70 (194)
T ss_pred cEEEEEeeEEEEecC-----------CCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 358999999999410 0011356999999999999999999999999999999999999 999999999
Q ss_pred CCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 100 NSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
+|+++.....++.++|++|++.+++.+|++||+.+.... ..||||||||+
T Consensus 71 ~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------------------~~LS~G~~qrv 120 (194)
T cd03213 71 NGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------------RGLSGGERKRV 120 (194)
T ss_pred CCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh------------------------------ccCCHHHHHHH
Confidence 999886545667899999999999999999999765311 07999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++.++.+.+|++++|++|++++.|
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999764 8999999999974578899999999999998764
No 221
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.2e-42 Score=420.50 Aligned_cols=225 Identities=26% Similarity=0.376 Sum_probs=203.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-+|+++||++.|. ++.+.+|+|+|+.+++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 1936 ~~L~v~nLsK~Y~---------------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G 2000 (2272)
T TIGR01257 1936 DILRLNELTKVYS---------------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG 2000 (2272)
T ss_pred ceEEEEEEEEEEC---------------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 4699999999993 1236799999999999999999999999999999999999999999999999
Q ss_pred eeCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 102 SPIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 102 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
+++.. ...++.+||+||++.+++.+||+|++.+.+++++.+.++.+++++++++.+||.+..|+++ ++|||||||||
T Consensus 2001 ~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-~~LSGGqKqRL 2079 (2272)
T TIGR01257 2001 KSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-GTYSGGNKRKL 2079 (2272)
T ss_pred EECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-hhCCHHHHHHH
Confidence 98742 3456789999999999999999999999877655444556678899999999998888885 99999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+||+||+.+|+++||||||+|||+.+++.+++.|++++++ |+|||++||+++ ++..+|||+++|++|+++..|+++++
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999765 899999999998 68999999999999999999999999
Q ss_pred HHHHH
Q 007383 260 ETFLL 264 (605)
Q Consensus 260 ~~~~~ 264 (605)
...+.
T Consensus 2158 k~~~g 2162 (2272)
T TIGR01257 2158 KSKFG 2162 (2272)
T ss_pred HHHhC
Confidence 77664
No 222
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-42 Score=348.30 Aligned_cols=218 Identities=25% Similarity=0.397 Sum_probs=186.7
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++|+++++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 9 ~~i~~~~~~~~~-----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G 71 (257)
T PRK14246 9 DVFNISRLYLYI-----------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71 (257)
T ss_pred hheeeeeEEEec-----------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcC
Confidence 359999999998 356799999999999999999999999999999999999999987776665
Q ss_pred ------eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCCcc----cccccc
Q 007383 102 ------SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV-PKTSQIDTIITVLLTELRLAH----LASTRL 167 (605)
Q Consensus 102 ------~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~v~~~l~~l~L~~----~~~~~~ 167 (605)
+++. ...+++.++|++|++.+++.+|++||+.+...... ...++..+++.++++.+++.+ ..++.
T Consensus 72 ~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 150 (257)
T PRK14246 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSP- 150 (257)
T ss_pred EEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCC-
Confidence 4432 22356789999999999999999999998754322 223345567889999999963 44555
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+++|++++|++
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 589999999999999999999999999999999999999999999999963 589999999997 47789999999999
Q ss_pred CeEEEecChhhHH
Q 007383 248 GSVVHHGTLASLE 260 (605)
Q Consensus 248 G~iv~~g~~~~~~ 260 (605)
|+++..|+.+++.
T Consensus 228 g~i~~~g~~~~~~ 240 (257)
T PRK14246 228 GELVEWGSSNEIF 240 (257)
T ss_pred CEEEEECCHHHHH
Confidence 9999999988763
No 223
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-42 Score=346.92 Aligned_cols=214 Identities=29% Similarity=0.459 Sum_probs=178.0
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+.. .++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 i~~~~l~~~~~~---------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 65 (234)
T cd03251 1 VEFKNVTFRYPG---------------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD 65 (234)
T ss_pred CEEEEEEEEeCC---------------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEE
Confidence 478999998831 12369999999999999999999999999999999999999999999999987
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHc--CCcccccccccCCCCH
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDT-----IITVLLTEL--RLAHLASTRLAHNLSG 173 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~~LSg 173 (605)
+.. ...++.++|++|++.+++ .||+||+.+..... ...+..+ .+.+.++.+ ++.+..++. +..|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~LS~ 141 (234)
T cd03251 66 VRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGER-GVKLSG 141 (234)
T ss_pred hhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccC-CCcCCH
Confidence 642 345677999999998886 69999998754321 1111111 234556655 666666666 489999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.. +|++++|++|+++..
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~ 217 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVER 217 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeee
Confidence 99999999999999999999999999999999999999999996 3 789999999997 4655 999999999999999
Q ss_pred cChhhHH
Q 007383 254 GTLASLE 260 (605)
Q Consensus 254 g~~~~~~ 260 (605)
|+++++.
T Consensus 218 ~~~~~~~ 224 (234)
T cd03251 218 GTHEELL 224 (234)
T ss_pred CCHHHHH
Confidence 9987764
No 224
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-42 Score=390.86 Aligned_cols=222 Identities=27% Similarity=0.357 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|.. ..+.+.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 12 ~l~v~~l~~~y~~-------------~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~ 78 (623)
T PRK10261 12 VLAVENLNIAFMQ-------------EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM 78 (623)
T ss_pred eEEEeceEEEecC-------------CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCE
Confidence 6999999999941 112357999999999999999999999999999999999999999999999987
Q ss_pred eCC-------------cc---ccc-CceEEEcCCC--CCCCCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHHcCCcc-
Q 007383 103 PIK-------------PS---SFR-KLSAYVPQHD--ACIPSLTVYETFLFSARLL-VPKTSQIDTIITVLLTELRLAH- 161 (605)
Q Consensus 103 ~~~-------------~~---~~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~- 161 (605)
.+. .. .++ +.+|||+|++ .+++.+||.||+.++.... +.+..+.++++.++++.+||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 79 LLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred EeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh
Confidence 431 01 122 4699999997 6788899999999986542 3344556678999999999953
Q ss_pred --cccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcC
Q 007383 162 --LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTI 239 (605)
Q Consensus 162 --~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 239 (605)
..++. +.+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++++++.|+|||++|||++ .+.++|
T Consensus 159 ~~~~~~~-~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~a 236 (623)
T PRK10261 159 QTILSRY-PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIA 236 (623)
T ss_pred hhHHhCC-CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhC
Confidence 35666 59999999999999999999999999999999999999999999999998766899999999998 488999
Q ss_pred CeEEEEeCCeEEEecChhhH
Q 007383 240 DRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 240 d~v~~l~~G~iv~~g~~~~~ 259 (605)
|||++|++|++++.|+++++
T Consensus 237 dri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 237 DRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred CEEEEeeCCeecccCCHHHh
Confidence 99999999999999998776
No 225
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.6e-42 Score=382.07 Aligned_cols=217 Identities=24% Similarity=0.339 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEEC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP--TNGTILLN 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~--~~G~I~~~ 100 (605)
.|+++|++++| +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++
T Consensus 1 ~l~i~~l~~~~-----------------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~ 63 (500)
T TIGR02633 1 LLEMKGIVKTF-----------------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWS 63 (500)
T ss_pred CEEEEeEEEEe-----------------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 37899999998 235699999999999999999999999999999999999987 79999999
Q ss_pred CeeCCcc----cccCceEEEcCCCCCCCCCCHHHHHHHHHhcC--C--CChhHHHHHHHHHHHHcCCcccc-cccccCCC
Q 007383 101 SSPIKPS----SFRKLSAYVPQHDACIPSLTVYETFLFSARLL--V--PKTSQIDTIITVLLTELRLAHLA-STRLAHNL 171 (605)
Q Consensus 101 g~~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~--~--~~~~~~~~~v~~~l~~l~L~~~~-~~~~~~~L 171 (605)
|+++... ..++.+|||+|++.+++.+||+||+.+..... . ...++.+++++++++.+++.+.. ++. +++|
T Consensus 64 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~L 142 (500)
T TIGR02633 64 GSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-VGDY 142 (500)
T ss_pred CEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-hhhC
Confidence 9987531 13467999999999999999999998875432 1 12334456788999999998654 344 5999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|+++
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLN-EVKAVCDTICVIRDGQHV 220 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEe
Confidence 99999999999999999999999999999999999999999999975 4889999999998 588899999999999999
Q ss_pred EecChhhH
Q 007383 252 HHGTLASL 259 (605)
Q Consensus 252 ~~g~~~~~ 259 (605)
..|++++.
T Consensus 221 ~~~~~~~~ 228 (500)
T TIGR02633 221 ATKDMSTM 228 (500)
T ss_pred eecCcccC
Confidence 99887653
No 226
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.9e-42 Score=382.36 Aligned_cols=226 Identities=23% Similarity=0.338 Sum_probs=190.9
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
..+|+++||++.|... +.+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++
T Consensus 277 ~~~l~~~~l~~~~~~~------------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 344 (520)
T TIGR03269 277 EPIIKVRNVSKRYISV------------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR 344 (520)
T ss_pred CceEEEeccEEEeccC------------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEe
Confidence 3479999999998310 1123569999999999999999999999999999999999999999999996
Q ss_pred -Cee---CCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-----cccc
Q 007383 101 -SSP---IKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-----LAST 165 (605)
Q Consensus 101 -g~~---~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~ 165 (605)
|.+ +.. ...++.++|++|++.+++.+||.||+.+.... ..+.++.+++++++++.+|+.+ ..++
T Consensus 345 ~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 423 (520)
T TIGR03269 345 VGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDK 423 (520)
T ss_pred cCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhC
Confidence 642 211 12356799999999899999999999876433 1222334567889999999974 3566
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++ .+.++||++++|
T Consensus 424 ~-~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l 501 (520)
T TIGR03269 424 Y-PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALM 501 (520)
T ss_pred C-hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEE
Confidence 6 59999999999999999999999999999999999999999999999998766899999999998 588999999999
Q ss_pred eCCeEEEecChhhHHH
Q 007383 246 SKGSVVHHGTLASLET 261 (605)
Q Consensus 246 ~~G~iv~~g~~~~~~~ 261 (605)
++|+++..|+++++.+
T Consensus 502 ~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 502 RDGKIVKIGDPEEIVE 517 (520)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999887643
No 227
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=345.08 Aligned_cols=216 Identities=24% Similarity=0.386 Sum_probs=185.8
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~ 96 (605)
..++++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+
T Consensus 2 ~~l~~~~v~~~~-----------------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 64 (250)
T PRK14266 2 YRIEVENLNTYF-----------------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH 64 (250)
T ss_pred cEEEEEeEEEEe-----------------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccE
Confidence 458999999988 23569999999999999999999999999999999999864 38999
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcc----ccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAH----LASTR 166 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~----~~~~~ 166 (605)
|.+||+++.. ...++.++|++|++.+++. |+.||+.+....... ..+..++++.++++.+++.+ ..++.
T Consensus 65 v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 143 (250)
T PRK14266 65 IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKS 143 (250)
T ss_pred EEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCC
Confidence 9999998742 2356789999999988875 999999887543222 23345677888999998743 34555
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|++++|+
T Consensus 144 -~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~-~~~~~~~~i~~l~ 219 (250)
T PRK14266 144 -ALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQ-QATRVSKYTSFFL 219 (250)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 48999999999999999999999999999999999999999999999995 3 689999999998 5889999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|++++.|+++++
T Consensus 220 ~G~i~~~g~~~~~ 232 (250)
T PRK14266 220 NGEIIESGLTDQI 232 (250)
T ss_pred CCeEEEeCCHHHH
Confidence 9999999998876
No 228
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=346.42 Aligned_cols=216 Identities=22% Similarity=0.314 Sum_probs=185.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~ 96 (605)
+.+.++++++.| +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++| ++|+
T Consensus 7 ~~~~~~~~~~~~-----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~ 69 (261)
T PRK14263 7 IVMDCKLDKIFY-----------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGH 69 (261)
T ss_pred ceEEEEeEEEEe-----------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceE
Confidence 348888998887 346799999999999999999999999999999999999986 7999
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc----ccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL----ASTRL 167 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~~ 167 (605)
|.++|+++.. ..+++.++|++|++.++ .+|+.||+.+....... ..+..++++++++.+++.+. .++.
T Consensus 70 i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~- 146 (261)
T PRK14263 70 VHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVS- 146 (261)
T ss_pred EEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCC-
Confidence 9999998632 23567799999999887 58999999987654321 22345678889999998542 2334
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe-
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS- 246 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~- 246 (605)
+++||||||||++|||||+++|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|++++|+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~-~i~~~~d~v~~l~~ 223 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQ-QAIRVADTTAFFSV 223 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEec
Confidence 48999999999999999999999999999999999999999999999995 3 689999999998 4889999999996
Q ss_pred -------CCeEEEecChhhHH
Q 007383 247 -------KGSVVHHGTLASLE 260 (605)
Q Consensus 247 -------~G~iv~~g~~~~~~ 260 (605)
+|+++..|+.+++.
T Consensus 224 ~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 224 DISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred ccccccCCceEEEeCCHHHHH
Confidence 89999999988763
No 229
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=346.56 Aligned_cols=218 Identities=25% Similarity=0.398 Sum_probs=185.1
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----Cc
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TN 94 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~ 94 (605)
+...|+++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+| ++
T Consensus 13 ~~~~l~~~~l~~~~~-----------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~s 75 (265)
T PRK14252 13 TQQKSEVNKLNFYYG-----------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYE 75 (265)
T ss_pred CCceEEEEEEEEEEC-----------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcc
Confidence 345699999999983 35699999999999999999999999999999999999875 79
Q ss_pred cEEEECCeeCC-------cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHcCCc----cc
Q 007383 95 GTILLNSSPIK-------PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPK-TSQIDTIITVLLTELRLA----HL 162 (605)
Q Consensus 95 G~I~~~g~~~~-------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~l~L~----~~ 162 (605)
|+|.++|++++ ...+++.++|++|++.+++. ||+||+.+.....+.. ....+++++++++.+++. +.
T Consensus 76 G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~ 154 (265)
T PRK14252 76 GEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDR 154 (265)
T ss_pred cEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHH
Confidence 99999997653 12356779999999988886 9999998875432222 222346678888888774 33
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeE
Q 007383 163 ASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRI 242 (605)
Q Consensus 163 ~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v 242 (605)
.++. +..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++
T Consensus 155 ~~~~-~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 155 LGDL-AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred HhCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHH-HHHHhCCEE
Confidence 4455 489999999999999999999999999999999999999999999999964 589999999997 588899999
Q ss_pred EEEeCCeEEEecChhhH
Q 007383 243 LLLSKGSVVHHGTLASL 259 (605)
Q Consensus 243 ~~l~~G~iv~~g~~~~~ 259 (605)
++|++|+++..|+.+++
T Consensus 231 ~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 231 AYMYMGELIEFGATDTI 247 (265)
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
No 230
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.8e-42 Score=394.91 Aligned_cols=209 Identities=31% Similarity=0.439 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||+++|+. ..+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||+
T Consensus 451 ~I~~~nvsf~Y~~---------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 515 (686)
T TIGR03797 451 AIEVDRVTFRYRP---------------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQ 515 (686)
T ss_pred eEEEEEEEEEcCC---------------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 5999999999941 2356999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~~ 169 (605)
++. ...+|+.+|||+|++.+|+. |++||+.++.. ..++++.++++..|+.+.. |+.+ ..
T Consensus 516 ~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~ 587 (686)
T TIGR03797 516 DLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG 587 (686)
T ss_pred EcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC-------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 874 45788999999999999875 99999987632 1234566777777775432 3332 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|++|+||||||+||+.+.+++.+.|+++ ++|+|+++|+++ ..+.+|+|++|++|+
T Consensus 588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~--~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLS--TIRNADRIYVLDAGR 661 (686)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChH--HHHcCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999876 469999999996 467799999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
+++.|+.+++.
T Consensus 662 iv~~G~~~~Ll 672 (686)
T TIGR03797 662 VVQQGTYDELM 672 (686)
T ss_pred EEEECCHHHHH
Confidence 99999998874
No 231
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.2e-42 Score=346.19 Aligned_cols=216 Identities=33% Similarity=0.475 Sum_probs=175.0
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+.. .+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 l~i~~l~~~~~~--------------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 66 (238)
T cd03249 1 IEFKNVSFRYPS--------------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVD 66 (238)
T ss_pred CeEEEEEEecCC--------------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEe
Confidence 468999998831 123569999999999999999999999999999999999999999999999988
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHc--CCcccccccccCCCCH
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDT-----IITVLLTEL--RLAHLASTRLAHNLSG 173 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~~LSg 173 (605)
+.. ...++.++|++|++.+++ .||+||+.+..... ..++..+ .+.+.++.+ ++....++. +.+|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~LS~ 142 (238)
T cd03249 67 IRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGER-GSQLSG 142 (238)
T ss_pred hhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccC-CccCCH
Confidence 642 234567999999988876 69999998753221 1111111 122333333 444444555 489999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ .|+|||++||+++ ++. .||++++|++|++++.
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQ 218 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999985 4789999999997 454 8999999999999999
Q ss_pred cChhhHHH
Q 007383 254 GTLASLET 261 (605)
Q Consensus 254 g~~~~~~~ 261 (605)
|+.+++.+
T Consensus 219 ~~~~~~~~ 226 (238)
T cd03249 219 GTHDELMA 226 (238)
T ss_pred CCHHHHhh
Confidence 98877644
No 232
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1e-41 Score=381.59 Aligned_cols=222 Identities=24% Similarity=0.321 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----CccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G~I 97 (605)
+|+++|++++|.. ..+.+.+|+|+||++++||++||+||||||||||+|+|+|+++| ++|+|
T Consensus 5 ~l~~~~l~~~~~~-------------~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 71 (529)
T PRK15134 5 LLAIENLSVAFRQ-------------QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI 71 (529)
T ss_pred eEEEeceEEEecC-------------CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE
Confidence 6999999999931 01135799999999999999999999999999999999999986 79999
Q ss_pred EECCeeCCcc------ccc-CceEEEcCCCC--CCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcc---ccc
Q 007383 98 LLNSSPIKPS------SFR-KLSAYVPQHDA--CIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAH---LAS 164 (605)
Q Consensus 98 ~~~g~~~~~~------~~~-~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~---~~~ 164 (605)
.++|+++... ..+ +.+||++|++. +.+.+|+.|++.+.... .+.+..+.+++++++++.+||.+ ..+
T Consensus 72 ~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 151 (529)
T PRK15134 72 RFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLT 151 (529)
T ss_pred EECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 9999987421 122 57999999974 66778999998865433 22334456678899999999975 246
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 165 TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 165 ~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
+. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|+|||++|||++ .+.+++|++++
T Consensus 152 ~~-~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~ 229 (529)
T PRK15134 152 DY-PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAV 229 (529)
T ss_pred hC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEE
Confidence 66 49999999999999999999999999999999999999999999999998755889999999998 47889999999
Q ss_pred EeCCeEEEecChhhH
Q 007383 245 LSKGSVVHHGTLASL 259 (605)
Q Consensus 245 l~~G~iv~~g~~~~~ 259 (605)
|++|++++.|+++++
T Consensus 230 l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 230 MQNGRCVEQNRAATL 244 (529)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998776
No 233
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.9e-42 Score=342.27 Aligned_cols=205 Identities=33% Similarity=0.527 Sum_probs=173.5
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 3 l~~~~l~~~~~~---------------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 67 (220)
T cd03245 3 IEFRNVSFSYPN---------------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD 67 (220)
T ss_pred EEEEEEEEEcCC---------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEE
Confidence 789999998831 12569999999999999999999999999999999999999999999999988
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccc----------cCC
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL----------AHN 170 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~----------~~~ 170 (605)
+.. ...++.++|++|++.+++ .||.||+.+.... . .++.+.++++.+++.+..++.+ +.+
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (220)
T cd03245 68 IRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL---A---DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRG 140 (220)
T ss_pred hHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC---C---CHHHHHHHHHHcCcHHHHHhccccccceecCCCcc
Confidence 632 234567999999998876 6999999764321 1 1234567788888876655431 269
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ + +|||++||+++. + +++|++++|++|++
T Consensus 141 LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~-~-~~~d~v~~l~~g~i 216 (220)
T cd03245 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-D-KTLIIITHRPSL-L-DLVDRIIVMDSGRI 216 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C-CEEEEEeCCHHH-H-HhCCEEEEEeCCeE
Confidence 999999999999999999999999999999999999999999999964 3 799999999973 4 79999999999999
Q ss_pred EEec
Q 007383 251 VHHG 254 (605)
Q Consensus 251 v~~g 254 (605)
++.|
T Consensus 217 ~~~~ 220 (220)
T cd03245 217 VADG 220 (220)
T ss_pred eecC
Confidence 8654
No 234
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.1e-42 Score=382.44 Aligned_cols=229 Identities=24% Similarity=0.350 Sum_probs=191.3
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++|+++.|..+... .+++.+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ ++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~------~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g 346 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGI------LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDG 346 (529)
T ss_pred CcccccCcEEEeecCccc------cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECC
Confidence 469999999998411000 0000123579999999999999999999999999999999999995 899999999
Q ss_pred eeCCc---c---cccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHHcCCc-ccccccccCC
Q 007383 102 SPIKP---S---SFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLV--PKTSQIDTIITVLLTELRLA-HLASTRLAHN 170 (605)
Q Consensus 102 ~~~~~---~---~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~ 170 (605)
+++.. . .+++.++|++|++ .+++.+||.||+.++..... .+.++.+++++++++.+|+. +..++. +++
T Consensus 347 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 425 (529)
T PRK15134 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY-PAE 425 (529)
T ss_pred EEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-Ccc
Confidence 88642 1 2356799999996 47888999999998754321 23334557788999999997 456666 499
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++.|+|||++|||++ ++.++||++++|++|++
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEV 504 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998765889999999998 48899999999999999
Q ss_pred EEecChhhH
Q 007383 251 VHHGTLASL 259 (605)
Q Consensus 251 v~~g~~~~~ 259 (605)
+..|+++++
T Consensus 505 ~~~~~~~~~ 513 (529)
T PRK15134 505 VEQGDCERV 513 (529)
T ss_pred EEEcCHHHH
Confidence 999998776
No 235
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.3e-41 Score=342.85 Aligned_cols=226 Identities=23% Similarity=0.315 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART--SPTNGTILLN 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~--~~~~G~I~~~ 100 (605)
+|+++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 ~i~~~nl~~~~~-----------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~ 63 (248)
T PRK09580 1 MLSIKDLHVSVE-----------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63 (248)
T ss_pred CeEEEEEEEEeC-----------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEEC
Confidence 478999999983 356999999999999999999999999999999999995 6899999999
Q ss_pred CeeCCc---cc-ccCceEEEcCCCCCCCCCCHHHHHHHHHhc---CCC----ChhHHHHHHHHHHHHcCCc-cccccccc
Q 007383 101 SSPIKP---SS-FRKLSAYVPQHDACIPSLTVYETFLFSARL---LVP----KTSQIDTIITVLLTELRLA-HLASTRLA 168 (605)
Q Consensus 101 g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~---~~~----~~~~~~~~v~~~l~~l~L~-~~~~~~~~ 168 (605)
|+++.. .. .++.++|++|++.+++.+|+.+++.+.... ... ...+.++++++.++.+++. +..++.+.
T Consensus 64 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (248)
T PRK09580 64 GKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN 143 (248)
T ss_pred CCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC
Confidence 987642 12 235699999999888888887776543211 111 1122356678899999995 44444432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc-CCeEEEEeC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST-IDRILLLSK 247 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~d~v~~l~~ 247 (605)
++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++. +... +|++++|++
T Consensus 144 ~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~-~~~~~~d~i~~l~~ 221 (248)
T PRK09580 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDYVHVLYQ 221 (248)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-HHhhhCCEEEEEEC
Confidence 37999999999999999999999999999999999999999999999975 47899999999874 6666 899999999
Q ss_pred CeEEEecChhhHHHHHHhCCC
Q 007383 248 GSVVHHGTLASLETFLLSSGF 268 (605)
Q Consensus 248 G~iv~~g~~~~~~~~~~~~g~ 268 (605)
|++++.|+++.+ +.+...+|
T Consensus 222 g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 222 GRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred CeEEEeCCHHHH-HHHHhcCC
Confidence 999999998855 33444444
No 236
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=378.92 Aligned_cols=214 Identities=25% Similarity=0.322 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 4 ~l~~~~l~~~~~-----------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 66 (501)
T PRK11288 4 YLSFDGIGKTFP-----------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66 (501)
T ss_pred eEEEeeeEEEEC-----------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 699999999982 356999999999999999999999999999999999999999999999999
Q ss_pred eCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc--CC-CChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARL--LV-PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~--~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++.. ..+++.++|++|++.+++.+||.||+.+.... .+ ....+.+++++++++.+|+.+..++. +.+|||||
T Consensus 67 ~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgGq 145 (501)
T PRK11288 67 EMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-LKYLSIGQ 145 (501)
T ss_pred ECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-hhhCCHHH
Confidence 8742 23467899999999999999999999986421 11 12334566788999999998777766 49999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|+++..++
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRME-EIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999976 4889999999998 5889999999999999987665
Q ss_pred h
Q 007383 256 L 256 (605)
Q Consensus 256 ~ 256 (605)
.
T Consensus 224 ~ 224 (501)
T PRK11288 224 D 224 (501)
T ss_pred c
Confidence 3
No 237
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.2e-42 Score=342.12 Aligned_cols=192 Identities=28% Similarity=0.397 Sum_probs=166.5
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
+.+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+...+.+.+||+|
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~e 103 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL---------LGLGGGFNPELTGRE 103 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh---------hcccccCCCCCcHHH
Confidence 45789999999999999999999999999999999999999999999999987531 111233456789999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVM 210 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 210 (605)
|+.+.........++.+++++++++.+++.+..++.+ ++||||||||++|||+|+.+|++++|||||+|||+.++..+.
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~ 182 (224)
T cd03220 104 NIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPV-KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ 182 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 9998765433233445567888999999988877775 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 211 QTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 211 ~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
+.|++++++ |+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 183 ~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 183 RRLRELLKQ-GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999765 789999999997 578899999999999998765
No 238
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-42 Score=379.59 Aligned_cols=213 Identities=23% Similarity=0.317 Sum_probs=186.6
Q ss_pred EeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc
Q 007383 27 SSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP 106 (605)
Q Consensus 27 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~ 106 (605)
+|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 2 ~nl~~~~-----------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 64 (491)
T PRK10982 2 SNISKSF-----------------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDF 64 (491)
T ss_pred CceEEEe-----------------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCC
Confidence 6788887 24579999999999999999999999999999999999999999999999998742
Q ss_pred ----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CC--CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 107 ----SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LV--PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 107 ----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~--~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
...++.++|++|++.+++.+||+||+.+.... .+ .+.++..++++++++.+++.+..++.+ .+|||||||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgGq~qrv 143 (491)
T PRK10982 65 KSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-ATLSVSQMQMI 143 (491)
T ss_pred CCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-hhCCHHHHHHH
Confidence 12456799999999889999999999876421 11 123344567889999999987777774 99999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++..|++++.
T Consensus 144 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 144 EIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999999999999999999999999999976 4889999999997 58889999999999999999998764
No 239
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-41 Score=331.56 Aligned_cols=187 Identities=41% Similarity=0.675 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART--SPTNGTILLN 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~--~~~~G~I~~~ 100 (605)
.|+++|+++.|+. ....+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 3 ~l~~~~l~~~~~~-------------~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~ 69 (192)
T cd03232 3 VLTWKNLNYTVPV-------------KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILIN 69 (192)
T ss_pred EEEEeeeEEEecC-------------CCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEEC
Confidence 5899999999841 011256999999999999999999999999999999999986 4799999999
Q ss_pred CeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 101 SSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
|+++. ...++.++|++|++.+++.+|++||+.+.... ++||||||||++
T Consensus 70 g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------------------------~~LSgGe~qrv~ 118 (192)
T cd03232 70 GRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL------------------------------RGLSVEQRKRLT 118 (192)
T ss_pred CEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH------------------------------hcCCHHHhHHHH
Confidence 99875 45567899999999999999999999875310 079999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC-CeEEEec
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK-GSVVHHG 254 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~-G~iv~~g 254 (605)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++.++.+.+|++++|++ |++++.|
T Consensus 119 la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 119 IGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999976 4889999999997436789999999999 9999865
No 240
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=355.34 Aligned_cols=219 Identities=21% Similarity=0.339 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~ 96 (605)
..|+++|++++|.. +.+.+|+|+|++|++||++||+||||||||||+++|+|+.+ |++|+
T Consensus 79 ~~i~~~nls~~y~~---------------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~ 143 (329)
T PRK14257 79 NVFEIRNFNFWYMN---------------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGE 143 (329)
T ss_pred ceEEEEeeEEEecC---------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 36999999999841 23569999999999999999999999999999999999986 57999
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHcCCcc----ccccc
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPK-TSQIDTIITVLLTELRLAH----LASTR 166 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~v~~~l~~l~L~~----~~~~~ 166 (605)
|.++|+++.. ..+++.++||||++.+++ .|++||+.|+....... .+..++.++++++.++|.+ ..++.
T Consensus 144 I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~ 222 (329)
T PRK14257 144 IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKA 222 (329)
T ss_pred EEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCC
Confidence 9999999742 245778999999998885 79999999875432222 2223445778888888743 33444
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+.+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.+||+++|+
T Consensus 223 -~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~~~Driivl~ 298 (329)
T PRK14257 223 -GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQRISDETVFFY 298 (329)
T ss_pred -cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 589999999999999999999999999999999999999999999999864 589999999998 4788899999999
Q ss_pred CCeEEEecChhhHH
Q 007383 247 KGSVVHHGTLASLE 260 (605)
Q Consensus 247 ~G~iv~~g~~~~~~ 260 (605)
+|+++..|+++++.
T Consensus 299 ~G~i~e~g~~~~l~ 312 (329)
T PRK14257 299 QGWIEEAGETKTIF 312 (329)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999999873
No 241
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.2e-41 Score=334.35 Aligned_cols=196 Identities=27% Similarity=0.398 Sum_probs=173.6
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++||++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~i~~l~~~~-----------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (201)
T cd03231 1 LEADELTCER-----------------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGP 63 (201)
T ss_pred CEEEEEEEEe-----------------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe
Confidence 4789999988 24569999999999999999999999999999999999999999999999988
Q ss_pred CCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 104 IKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 104 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+.. ..+++.++|++|++.+++.+|++||+.+.... ..+++++++++.+++.+..++.+ .+||||||||++|
T Consensus 64 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrl~l 136 (201)
T cd03231 64 LDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPV-AQLSAGQQRRVAL 136 (201)
T ss_pred cccccHHhhhheEEeccccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCch-hhCCHHHHHHHHH
Confidence 642 34567899999999888899999999875321 12456788999999988777774 9999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
|++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||++. ++...+|+++.+
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR-GGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999998754 789999999987 478899999887
No 242
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-42 Score=342.50 Aligned_cols=214 Identities=28% Similarity=0.453 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|+++.+. +.+.+++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~----------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (229)
T cd03254 2 EIEFENVNFSYD----------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGI 65 (229)
T ss_pred eEEEEEEEEecC----------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 378999999883 1245999999999999999999999999999999999999999999999998
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHc--CCcccccccccCCCC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDT-----IITVLLTEL--RLAHLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~~LS 172 (605)
++. ...+++.++|++|++.+++. |++||+.+..... ...+..+ .+++.++.+ ++....++. +++||
T Consensus 66 ~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LS 141 (229)
T cd03254 66 DIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN-GGNLS 141 (229)
T ss_pred eHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcC-CCcCC
Confidence 764 23456779999999988875 9999998753211 1111111 122233333 343333444 48999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++. + +.+|++++|++|++++
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~ 217 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLST-I-KNADKILVLDDGKIIE 217 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHH-H-hhCCEEEEEeCCeEEE
Confidence 999999999999999999999999999999999999999999985 4 7899999999973 5 4699999999999999
Q ss_pred ecChhhHH
Q 007383 253 HGTLASLE 260 (605)
Q Consensus 253 ~g~~~~~~ 260 (605)
.|+.+++.
T Consensus 218 ~~~~~~~~ 225 (229)
T cd03254 218 EGTHDELL 225 (229)
T ss_pred eCCHHHHH
Confidence 98877653
No 243
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-40 Score=379.43 Aligned_cols=217 Identities=31% Similarity=0.438 Sum_probs=181.1
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
..-.++++||.++|+.+ ++..||+|+|+.+++|+.+||+|||||||||++++|.+++.|++|+|++
T Consensus 347 ~~g~ief~nV~FsYPsR--------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR--------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI 412 (1228)
T ss_pred cccceEEEEEEecCCCC--------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEE
Confidence 34469999999999632 3567999999999999999999999999999999999999999999999
Q ss_pred CCeeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-------Ccccccccc--
Q 007383 100 NSSPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELR-------LAHLASTRL-- 167 (605)
Q Consensus 100 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~~-- 167 (605)
||.++. .+.+|++||.|.|+|.+|. .|++||+.|+..- .-+++++++.+..+ |.+-.++.+
T Consensus 413 dG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~d------at~~~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 413 DGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPD------ATREEIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred cCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCCc------ccHHHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 999875 3567889999999998885 6999999987311 11222333332222 223334444
Q ss_pred -cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 168 -AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 168 -~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
..+||||||||++|||||+++|+|||||||||+||+.+...+.+.|.+.+ .|+|.|+++|+++. +.+ +|++++|+
T Consensus 486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLSt-Irn-aD~I~v~~ 561 (1228)
T KOG0055|consen 486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLST-IRN-ADKIAVME 561 (1228)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhh-hhc-cCEEEEEE
Confidence 24699999999999999999999999999999999999999999999986 37899999999984 555 99999999
Q ss_pred CCeEEEecChhhHHH
Q 007383 247 KGSVVHHGTLASLET 261 (605)
Q Consensus 247 ~G~iv~~g~~~~~~~ 261 (605)
+|+|++.|+.+|+.+
T Consensus 562 ~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 562 EGKIVEQGTHDELIA 576 (1228)
T ss_pred CCEEEEecCHHHHHh
Confidence 999999999999853
No 244
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-41 Score=348.07 Aligned_cols=234 Identities=24% Similarity=0.330 Sum_probs=207.4
Q ss_pred CCCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007383 18 PLKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97 (605)
Q Consensus 18 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I 97 (605)
+...+.++.+|+.+.|+.+.+. ++ +......+++++|+++++||.++|+|+||||||||=.+|.+++++. |+|
T Consensus 271 ~~~~~ll~~~~v~v~f~i~~g~----~~--r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I 343 (534)
T COG4172 271 EDAPVLLEVEDLRVWFPIKGGF----LR--RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEI 343 (534)
T ss_pred CCCCceEEecceEEEEecCCcc----cc--ccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceE
Confidence 3355679999999999865432 11 1223467999999999999999999999999999999999999886 999
Q ss_pred EECCeeCCc------ccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHHcCCcccccccc
Q 007383 98 LLNSSPIKP------SSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLV--PKTSQIDTIITVLLTELRLAHLASTRL 167 (605)
Q Consensus 98 ~~~g~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~v~~~l~~l~L~~~~~~~~ 167 (605)
.++|++++. ..+|+.+-.||||| .+.|.+||.|-+.-+...+. .+..+.++++.+.|+++||+.....++
T Consensus 344 ~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY 423 (534)
T COG4172 344 RFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY 423 (534)
T ss_pred EECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC
Confidence 999999852 23678899999998 48999999999999987743 377889999999999999987665566
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
|+++|||||||++|||||+.+|++++||||||+||-.-+.+|+++|+++.++.|.+-++++||+.. +..+||+|++|++
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~ 502 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD 502 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999984 8899999999999
Q ss_pred CeEEEecChhhH
Q 007383 248 GSVVHHGTLASL 259 (605)
Q Consensus 248 G~iv~~g~~~~~ 259 (605)
|+||+.|+.+++
T Consensus 503 GkiVE~G~~~~i 514 (534)
T COG4172 503 GKIVEQGPTEAV 514 (534)
T ss_pred CEEeeeCCHHHH
Confidence 999999999887
No 245
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-42 Score=367.75 Aligned_cols=213 Identities=32% Similarity=0.486 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|||++|++ ...++|+|+|+++++||.+||+|+||||||||+++|+|.++|++|+|.+||.
T Consensus 336 ~l~~~~vsF~y~~---------------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~ 400 (573)
T COG4987 336 ALELRNVSFTYPG---------------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV 400 (573)
T ss_pred eeeeccceeecCC---------------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCc
Confidence 7999999999962 2346999999999999999999999999999999999999999999999998
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccccc-------c---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR-------L---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~---~~ 169 (605)
++. ++.+++.+++++|...+|.. |+++||.++.. +.-++.+.++++++||++..... + .+
T Consensus 401 ~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~------~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~ 473 (573)
T COG4987 401 EIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP------DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR 473 (573)
T ss_pred ChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC------CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCC
Confidence 863 44578899999999998875 99999987631 12345677788888887654333 2 57
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+... .+.||||++|++|+
T Consensus 474 ~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~--le~~drIivl~~Gk 549 (573)
T COG4987 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRG--LERMDRIIVLDNGK 549 (573)
T ss_pred cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEeccccc--HhhcCEEEEEECCe
Confidence 8999999999999999999999999999999999999999999998763 7899999999984 68899999999999
Q ss_pred EEEecChhhHHH
Q 007383 250 VVHHGTLASLET 261 (605)
Q Consensus 250 iv~~g~~~~~~~ 261 (605)
+++.|+.+++..
T Consensus 550 iie~G~~~~Ll~ 561 (573)
T COG4987 550 IIEEGTHAELLA 561 (573)
T ss_pred eeecCCHHhhhc
Confidence 999999998753
No 246
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-41 Score=343.46 Aligned_cols=228 Identities=18% Similarity=0.268 Sum_probs=189.9
Q ss_pred cceEEEEeEEEEEecCCCCccc---cccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007383 21 TYKLTGSSISYIKSNNSIIPSF---IFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~---~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I 97 (605)
.+.++++||++.|+......++ .+........+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I 81 (264)
T PRK13546 2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 (264)
T ss_pred CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 3679999999999753211111 1111123355789999999999999999999999999999999999999999999
Q ss_pred EECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 98 LLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 98 ~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
.++|+ +++++|+..+.+.+|+.||+.+.........++..+.++++++.+++.+..++.+ ++|||||||
T Consensus 82 ~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~Gq~q 150 (264)
T PRK13546 82 DRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPV-KKYSSGMRA 150 (264)
T ss_pred EECCE----------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc-ccCCHHHHH
Confidence 99985 3567777777788999999987654332233445566778899999988777774 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|++||++|+.+|++|+|||||+|||+.++..+.+.|.++++ .|+|||++||++. ++.+.+|++++|++|+++..|+.+
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999975 4889999999987 478899999999999999999988
Q ss_pred hHHH
Q 007383 258 SLET 261 (605)
Q Consensus 258 ~~~~ 261 (605)
++.+
T Consensus 229 ~~~~ 232 (264)
T PRK13546 229 DVLP 232 (264)
T ss_pred HHHH
Confidence 7644
No 247
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=387.18 Aligned_cols=213 Identities=27% Similarity=0.404 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||+|+|+. +.+.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||+
T Consensus 341 ~i~~~~vsf~y~~---------------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 341 DIEFRNVTFTYPG---------------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred eEEEEEEEEecCC---------------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 5999999999941 2356999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
+++ ...+++.++||+|++.+|+. |++||+.++.. ++..+++++++++..|+.+. .|+.+ ..
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART-----EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV 479 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC-----CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence 874 34678899999999999974 99999987521 11124456666676665432 23333 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|+
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~--~~~~~D~Ii~l~~g~ 555 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEKADEILVVEDGE 555 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999853 689999999996 567899999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
+++.|+.+++.
T Consensus 556 i~e~g~~~~l~ 566 (582)
T PRK11176 556 IVERGTHAELL 566 (582)
T ss_pred EEEeCCHHHHH
Confidence 99999998874
No 248
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2e-41 Score=343.92 Aligned_cols=202 Identities=28% Similarity=0.439 Sum_probs=176.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~-----------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~- 65 (251)
T PRK09544 4 LVSLENVSVSFG-----------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG- 65 (251)
T ss_pred EEEEeceEEEEC-----------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-
Confidence 589999999982 35699999999999999999999999999999999999999999999987
Q ss_pred eCCcccccCceEEEcCCCCCCCC--CCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPS--LTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~--lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
+..++|++|++.+++. .|+.+++.+.. . ..++++.++++.+|+.+..++.+ ..||||||||++
T Consensus 66 -------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~----~---~~~~~~~~~l~~~gl~~~~~~~~-~~LSgGq~qrv~ 130 (251)
T PRK09544 66 -------KLRIGYVPQKLYLDTTLPLTVNRFLRLRP----G---TKKEDILPALKRVQAGHLIDAPM-QKLSGGETQRVL 130 (251)
T ss_pred -------ccCEEEeccccccccccChhHHHHHhccc----c---ccHHHHHHHHHHcCChHHHhCCh-hhCCHHHHHHHH
Confidence 2359999999877765 47888765321 1 12345778999999988877774 999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.+|++++|++ +++..|+++++
T Consensus 131 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 9999999999999999999999999999999999997655789999999998 58899999999964 79999998876
No 249
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-41 Score=326.13 Aligned_cols=171 Identities=33% Similarity=0.547 Sum_probs=156.3
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 l~~~~l~~~~~-----------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~ 63 (173)
T cd03230 1 IEVRNLSKRYG-----------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKD 63 (173)
T ss_pred CEEEEEEEEEC-----------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 46899999882 3469999999999999999999999999999999999999999999999998
Q ss_pred CCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 104 IKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 104 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+.. ..+++.++|++|++.+++.+|+.||+. ||||||||++|
T Consensus 64 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 64 IKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred cccchHhhhccEEEEecCCccccCCcHHHHhh-------------------------------------cCHHHHHHHHH
Confidence 742 345678999999999999899999873 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++.+.+|++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999875 789999999997 57889999999999864
No 250
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-41 Score=350.92 Aligned_cols=216 Identities=25% Similarity=0.371 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-----CCccE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-----PTNGT 96 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-----~~~G~ 96 (605)
.+|+++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+
T Consensus 44 ~~l~i~nl~~~~~-----------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~ 106 (305)
T PRK14264 44 AKLSVEDLDVYYG-----------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106 (305)
T ss_pred ceEEEEEEEEEeC-----------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 4699999999982 3569999999999999999999999999999999999986 68999
Q ss_pred EEECCeeCCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC------------CCC-hhHHHHHHHHHHHHcC
Q 007383 97 ILLNSSPIKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLL------------VPK-TSQIDTIITVLLTELR 158 (605)
Q Consensus 97 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~------------~~~-~~~~~~~v~~~l~~l~ 158 (605)
|.++|+++.. ...++.++|++|++.+++ .||+||+.+..... ... .+..++++.++++.++
T Consensus 107 I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 185 (305)
T PRK14264 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA 185 (305)
T ss_pred EEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC
Confidence 9999998742 234678999999988887 49999999875321 111 1223567888999998
Q ss_pred Cc----ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChH
Q 007383 159 LA----HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFK 234 (605)
Q Consensus 159 L~----~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~ 234 (605)
+. +..+.. +++||||||||++||+||+++|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .
T Consensus 186 l~~~~~~~~~~~-~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~ 261 (305)
T PRK14264 186 LWDEVNDRLDDN-ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQ-Q 261 (305)
T ss_pred CchhhhHHhcCc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-H
Confidence 84 334555 489999999999999999999999999999999999999999999999975 379999999998 4
Q ss_pred HHhcCCeE-EEEeCCeEEEecChhhH
Q 007383 235 ILSTIDRI-LLLSKGSVVHHGTLASL 259 (605)
Q Consensus 235 i~~~~d~v-~~l~~G~iv~~g~~~~~ 259 (605)
+.+++|++ ++|++|+++..|+++++
T Consensus 262 i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 262 AARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred HHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 78899997 57799999999998776
No 251
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-41 Score=385.43 Aligned_cols=211 Identities=28% Similarity=0.431 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.++++|+++.|+ .++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||
T Consensus 339 ~~i~~~~v~f~y~----------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 339 GRIDIDNVSFAYR----------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred CeEEEEEEEEEeC----------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 3599999999994 124699999999999999999999999999999999999999999999999
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---c
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---A 168 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~ 168 (605)
.+++ .+.++++++||+|++.+|+. |++||+.++. +. .+++++++++.+|+.+.. |+.+ .
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g 474 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR---DI----SEEQVWQALETVQLAELARSLPDGLYTPLGEQG 474 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC---CC----CHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 9874 45788999999999999986 9999999863 11 234567777777765432 3332 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
..||||||||++|||||+++|++|+||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++ ..+.+|+|++|++|
T Consensus 475 ~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~--~l~~~D~ii~l~~G 550 (592)
T PRK10790 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLS--TIVEADTILVLHRG 550 (592)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999863 589999999996 46779999999999
Q ss_pred eEEEecChhhHH
Q 007383 249 SVVHHGTLASLE 260 (605)
Q Consensus 249 ~iv~~g~~~~~~ 260 (605)
+++..|+.+++.
T Consensus 551 ~i~~~G~~~~L~ 562 (592)
T PRK10790 551 QAVEQGTHQQLL 562 (592)
T ss_pred EEEEEcCHHHHH
Confidence 999999999874
No 252
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.2e-41 Score=332.91 Aligned_cols=199 Identities=29% Similarity=0.425 Sum_probs=173.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~-----------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (207)
T PRK13539 2 MLEGEDLACVRG-----------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGG 64 (207)
T ss_pred EEEEEeEEEEEC-----------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 589999999982 356999999999999999999999999999999999999999999999998
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
++.....++.++|++|++.+++.+||+||+.+.....+. .+++++++++.+|+.+..++. +++||||||||++||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~qrl~la 139 (207)
T PRK13539 65 DIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGG----EELDIAAALEAVGLAPLAHLP-FGYLSAGQKRRVALA 139 (207)
T ss_pred eCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHcCC-hhhcCHHHHHHHHHH
Confidence 764222567899999998888899999999876543221 124578899999998777666 499999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.. |+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999999999999999998764 899999999997 3554 88887743
No 253
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=378.82 Aligned_cols=222 Identities=21% Similarity=0.348 Sum_probs=189.0
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEE
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-PTNGTILL 99 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-~~~G~I~~ 99 (605)
...|+++|+++.|+. .+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.+
T Consensus 257 ~~~l~~~~l~~~~~~--------------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~ 322 (506)
T PRK13549 257 EVILEVRNLTAWDPV--------------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322 (506)
T ss_pred CceEEEecCcccccc--------------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEE
Confidence 346999999998731 123469999999999999999999999999999999999998 59999999
Q ss_pred CCeeCCc----ccccCceEEEcCCC---CCCCCCCHHHHHHHHHh--cCC---CChhHHHHHHHHHHHHcCCc-cccccc
Q 007383 100 NSSPIKP----SSFRKLSAYVPQHD---ACIPSLTVYETFLFSAR--LLV---PKTSQIDTIITVLLTELRLA-HLASTR 166 (605)
Q Consensus 100 ~g~~~~~----~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~--~~~---~~~~~~~~~v~~~l~~l~L~-~~~~~~ 166 (605)
+|++++. ...++.++|++|++ .+++.+||.||+.+... ... .+.++.+++++++++.+++. +..++.
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 402 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA 402 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc
Confidence 9988742 12356799999985 47888999999987632 111 12233456789999999996 466777
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+++|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||++ ++.++||++++|+
T Consensus 403 -~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~-~~~~~~d~v~~l~ 479 (506)
T PRK13549 403 -IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELP-EVLGLSDRVLVMH 479 (506)
T ss_pred -cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEE
Confidence 4999999999999999999999999999999999999999999999999865 899999999998 5889999999999
Q ss_pred CCeEEEecChhhH
Q 007383 247 KGSVVHHGTLASL 259 (605)
Q Consensus 247 ~G~iv~~g~~~~~ 259 (605)
+|+++..|+++++
T Consensus 480 ~G~i~~~~~~~~~ 492 (506)
T PRK13549 480 EGKLKGDLINHNL 492 (506)
T ss_pred CCEEEEEeccccC
Confidence 9999999988765
No 254
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.1e-41 Score=382.35 Aligned_cols=213 Identities=33% Similarity=0.558 Sum_probs=184.9
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++|+++.|+. +++.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||
T Consensus 337 ~~i~~~~v~f~y~~---------------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g 401 (574)
T PRK11160 337 VSLTLNNVSFTYPD---------------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNG 401 (574)
T ss_pred CeEEEEEEEEECCC---------------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 35999999999941 234699999999999999999999999999999999999999999999999
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccc------ccc---cC
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAS------TRL---AH 169 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~------~~~---~~ 169 (605)
.++. ...+|+.++||+|++.+|+. |++||+.++.. +..++.+.++++..++.+..+ +.+ ..
T Consensus 402 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~------~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~ 474 (574)
T PRK11160 402 QPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP------NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGR 474 (574)
T ss_pred EEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC------ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCC
Confidence 9874 35678899999999999875 99999987631 123456778888888876543 322 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
.||||||||++|||+|+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++. .+.+|++++|++|+
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~--~~~~d~i~~l~~G~ 550 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTG--LEQFDRICVMDNGQ 550 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhH--HHhCCEEEEEeCCe
Confidence 799999999999999999999999999999999999999999999985 37899999999973 46699999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
+++.|+.+++.
T Consensus 551 i~~~g~~~~l~ 561 (574)
T PRK11160 551 IIEQGTHQELL 561 (574)
T ss_pred EEEeCCHHHHH
Confidence 99999998874
No 255
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-41 Score=393.65 Aligned_cols=211 Identities=29% Similarity=0.413 Sum_probs=180.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|+. ..+.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.
T Consensus 477 ~I~~~~vsf~y~~---------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 541 (710)
T TIGR03796 477 YVELRNITFGYSP---------------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI 541 (710)
T ss_pred eEEEEEEEEecCC---------------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 5999999999941 2356999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~~ 169 (605)
++. ...+|+.+|||+|++.+|+. |++||+.++. +. ..++++.++++..++.+.. |+.+ ..
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~---~~---~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~ 614 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD---PT---IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC---CC---CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC
Confidence 874 45688999999999999864 9999998652 11 1234455666666664432 3332 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|++|+||||||+||+.+.+.+.+.|++ .++|+|++||+++ ..+.+|+|++|++|+
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--TIRDCDEIIVLERGK 688 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--HHHhCCEEEEEeCCE
Confidence 7999999999999999999999999999999999999999999986 3689999999996 456799999999999
Q ss_pred EEEecChhhHHH
Q 007383 250 VVHHGTLASLET 261 (605)
Q Consensus 250 iv~~g~~~~~~~ 261 (605)
++..|+.+++.+
T Consensus 689 i~~~G~~~~Ll~ 700 (710)
T TIGR03796 689 VVQRGTHEELWA 700 (710)
T ss_pred EEEecCHHHHHH
Confidence 999999998754
No 256
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-41 Score=340.09 Aligned_cols=213 Identities=31% Similarity=0.481 Sum_probs=173.3
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 l~~~~l~~~~~----------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~ 64 (236)
T cd03253 1 IEFENVTFAYD----------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQD 64 (236)
T ss_pred CEEEEEEEEeC----------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEE
Confidence 46899999883 13469999999999999999999999999999999999999999999999988
Q ss_pred CC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHc--CCcccccccccCCCCH
Q 007383 104 IK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDT-----IITVLLTEL--RLAHLASTRLAHNLSG 173 (605)
Q Consensus 104 ~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~~LSg 173 (605)
+. ...+++.++|++|++.+++ .||+||+.+.... ....+..+ .+.+.++.+ ++....+.. ++.|||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~~~LS~ 140 (236)
T cd03253 65 IREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGER-GLKLSG 140 (236)
T ss_pred hhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcC-CCcCCH
Confidence 64 2345677999999998886 6999999875321 11111111 122333333 333334444 489999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++. +. .+|++++|++|+++..
T Consensus 141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~-~~-~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLST-IV-NADKIIVLKDGRIVER 216 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHH-HH-hCCEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999999964 7899999999974 54 5999999999999999
Q ss_pred cChhhHH
Q 007383 254 GTLASLE 260 (605)
Q Consensus 254 g~~~~~~ 260 (605)
|+.+++.
T Consensus 217 ~~~~~~~ 223 (236)
T cd03253 217 GTHEELL 223 (236)
T ss_pred CCHHHHh
Confidence 9887653
No 257
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.8e-41 Score=342.55 Aligned_cols=200 Identities=26% Similarity=0.422 Sum_probs=175.7
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc---ccccCceEEEcCCCCCCCCCCHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
+|+|+|+++++||+++|+||||||||||+++|+|+.++ +|+|.++|+++.. ...++.++|++|++.+++.+|++||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 79999999999999999999999999999999999864 9999999998742 2345679999999888888999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHH
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLH-------DPAVLLLDEPTSGLDSR 204 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~-------~P~illLDEPtsgLD~~ 204 (605)
+.+.... ....++.+++++++++.+|+.+..++.+ +.||||||||++||++|+. +|++|+|||||+|||+.
T Consensus 90 l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~ 167 (248)
T PRK03695 90 LTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSV-NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167 (248)
T ss_pred HHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCc-ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence 9876322 1222344667889999999987777774 9999999999999999998 67999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
++..+.++|++++++ |+|||++||+++ ++.+++|++++|++|+++..|+.+++
T Consensus 168 ~~~~l~~~L~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 168 QQAALDRLLSELCQQ-GIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999754 889999999997 58899999999999999999988765
No 258
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.2e-41 Score=336.77 Aligned_cols=211 Identities=29% Similarity=0.344 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC--
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN-- 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~-- 100 (605)
+|+++|+++.|.... ....++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 1 ml~~~~l~~~~~~~~----------~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~ 70 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQ----------QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHE 70 (224)
T ss_pred CEEEEeeEEEeeccc----------CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecC
Confidence 378999999984210 00112579999999999999999999999999999999999999999999998
Q ss_pred Ce--eCCc---cc---c-cCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-ccccccCC
Q 007383 101 SS--PIKP---SS---F-RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-ASTRLAHN 170 (605)
Q Consensus 101 g~--~~~~---~~---~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~~~~ 170 (605)
|+ ++.. .. . ++.++|++|++.+++.+||+|++.+.....+...++.++++.++++.+|+.+. .+.. +.+
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 149 (224)
T TIGR02324 71 GAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLP-PAT 149 (224)
T ss_pred CCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCC-ccc
Confidence 43 3321 11 2 35699999999999999999999886543332333445678889999999763 3555 599
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999999754 889999999976 4678999998763
No 259
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.2e-41 Score=390.60 Aligned_cols=214 Identities=33% Similarity=0.514 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||+++|+. ..+.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.
T Consensus 463 ~I~~~~vsf~Y~~---------------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 463 EIEFRNVSFAYPG---------------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred eEEEEEEEEEeCC---------------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 5999999999941 2356999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~~ 169 (605)
+++ ...+|+.++||+|++.+|+. |++||+.++.. . ..++++.++++..++.+.. |+.+ ..
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~---~---~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~ 600 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP---Y---ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGR 600 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC---C---CCHHHHHHHHHHcChHHHHHhCcccccceecCCCC
Confidence 874 45688999999999999875 99999987521 1 1234455666666654332 3332 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
.||||||||++|||||+++|++++||||||+||+.+.+.+.+.|+++.+ ++|+|+++|+++ ..+.+|+|++|++|+
T Consensus 601 ~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~--~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTS--LLDLVDRIIVMDNGR 676 (694)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHHhCCEEEEEeCCE
Confidence 7999999999999999999999999999999999999999999999863 689999999996 467899999999999
Q ss_pred EEEecChhhHHHH
Q 007383 250 VVHHGTLASLETF 262 (605)
Q Consensus 250 iv~~g~~~~~~~~ 262 (605)
+++.|+.+++.+.
T Consensus 677 i~e~G~~~eLl~~ 689 (694)
T TIGR03375 677 IVADGPKDQVLEA 689 (694)
T ss_pred EEeeCCHHHHHHH
Confidence 9999999988654
No 260
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-41 Score=326.80 Aligned_cols=173 Identities=37% Similarity=0.539 Sum_probs=156.8
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+. .+.+++|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 i~~~~l~~~~~-----------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (178)
T cd03229 1 LELKNVSKRYG-----------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED 63 (178)
T ss_pred CEEEEEEEEEC-----------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 46899999882 3569999999999999999999999999999999999999999999999988
Q ss_pred CCc-----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 104 IKP-----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 104 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
+.. ...++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 64 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-----------------------------------lS~G~~qr 108 (178)
T cd03229 64 LTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-----------------------------------LSGGQQQR 108 (178)
T ss_pred ccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec-----------------------------------CCHHHHHH
Confidence 642 24567899999999988889999987532 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.+.+|++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999998754789999999997 4777999999999885
No 261
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2e-41 Score=391.09 Aligned_cols=212 Identities=32% Similarity=0.470 Sum_probs=178.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||+++|+. .+++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|++|+|.+||+
T Consensus 478 ~I~~~nVsf~Y~~--------------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 543 (711)
T TIGR00958 478 LIEFQDVSFSYPN--------------RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGV 543 (711)
T ss_pred eEEEEEEEEECCC--------------CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 5999999999952 12357999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
+++ ...+++.++||+|++.+|+ .|++||+.++..- ..++++.++++..++.+. .|+.+ ..
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~------~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 616 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLTD------TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCCC------CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC
Confidence 874 3567889999999999987 5999999876321 113456666777666543 23333 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|+|++||||||+||+.+.+.+.+ .. . .+++|+|+++|+++ ..+.+|+|++|++|+
T Consensus 617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~--~i~~aD~IivL~~G~ 690 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRLS--TVERADQILVLKKGS 690 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccHH--HHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999988 22 2 24789999999996 457799999999999
Q ss_pred EEEecChhhHHH
Q 007383 250 VVHHGTLASLET 261 (605)
Q Consensus 250 iv~~g~~~~~~~ 261 (605)
+++.|+.+++.+
T Consensus 691 ive~Gt~~eL~~ 702 (711)
T TIGR00958 691 VVEMGTHKQLME 702 (711)
T ss_pred EEEeeCHHHHHh
Confidence 999999988753
No 262
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-42 Score=310.50 Aligned_cols=217 Identities=28% Similarity=0.418 Sum_probs=196.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|.++++++.| +..++|.|++++.++||.+.++||||||||||++.|.-+.-|.+|+..+-|.
T Consensus 2 sirv~~in~~y-----------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~ 64 (242)
T COG4161 2 SIQLNGINCFY-----------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64 (242)
T ss_pred ceEEccccccc-----------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccc
Confidence 47889999988 5678999999999999999999999999999999999999999999999886
Q ss_pred eCC------c---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 007383 103 PIK------P---SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~------~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LS 172 (605)
..+ . ..+|+.+|+|+|+-.++|.+||.|||.-+..- .+.++++...+..++++.+.|.+.+|+. |-.||
T Consensus 65 ~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~-plhls 143 (242)
T COG4161 65 HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRY-PLHLS 143 (242)
T ss_pred ccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccC-ceecc
Confidence 542 1 24778899999999999999999999876433 6667888889999999999999999887 58999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
|||+|||+|||||+.+|++|++||||++|||+-..++++++++++. .|.|=+++||..+. ..+.+.+|+.|.+|+|++
T Consensus 144 ggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~v-a~k~as~vvyme~g~ive 221 (242)
T COG4161 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEV-ARKTASRVVYMENGHIVE 221 (242)
T ss_pred cchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhH-HHhhhhheEeeecCeeEe
Confidence 9999999999999999999999999999999999999999999985 59999999999985 678899999999999999
Q ss_pred ecChhhH
Q 007383 253 HGTLASL 259 (605)
Q Consensus 253 ~g~~~~~ 259 (605)
.|+.+..
T Consensus 222 ~g~a~~f 228 (242)
T COG4161 222 QGDASCF 228 (242)
T ss_pred ecchhhc
Confidence 9987643
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.4e-41 Score=328.94 Aligned_cols=195 Identities=24% Similarity=0.340 Sum_probs=168.7
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~-----------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (198)
T TIGR01189 1 LAARNLACSR-----------------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTA 63 (198)
T ss_pred CEEEEEEEEE-----------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE
Confidence 4789999988 34679999999999999999999999999999999999999999999999998
Q ss_pred CCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 104 IKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 104 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+.. ..+++.++|++|++.+++.+|+.||+.+....... .++++.++++.+++.+..++.+ ++||||||||++|
T Consensus 64 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~l 138 (198)
T TIGR01189 64 LAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGG----AQRTIEDALAAVGLTGFEDLPA-AQLSAGQQRRLAL 138 (198)
T ss_pred cccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCC----cHHHHHHHHHHcCCHHHhcCCh-hhcCHHHHHHHHH
Confidence 642 23456799999998888889999999886543221 1346788999999988777774 9999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
|++++.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||++.. -.+++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR-GGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEEccccc---ccceEEee
Confidence 99999999999999999999999999999999999754 7899999999863 34576654
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.6e-41 Score=330.03 Aligned_cols=190 Identities=27% Similarity=0.358 Sum_probs=163.6
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECC
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSAR--TSPTNGTILLNS 101 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~--~~~~~G~I~~~g 101 (605)
|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+ .+|++|+|.+||
T Consensus 1 l~~~~l~~~~~-----------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g 63 (200)
T cd03217 1 LEIKDLHVSVG-----------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG 63 (200)
T ss_pred CeEEEEEEEeC-----------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECC
Confidence 46899999882 35699999999999999999999999999999999999 478999999999
Q ss_pred eeCCcc---c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 102 SPIKPS---S-FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 102 ~~~~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
+++... . .++.++|++|++.+++..|+++++ +...++|||||||
T Consensus 64 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l--------------------------------~~~~~~LS~G~~q 111 (200)
T cd03217 64 EDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL--------------------------------RYVNEGFSGGEKK 111 (200)
T ss_pred EECCcCCHHHHhhCcEEEeecChhhccCccHHHHH--------------------------------hhccccCCHHHHH
Confidence 987531 2 234599999999888888888765 0112589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHh-cCCeEEEEeCCeEEEecCh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILS-TIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~-~~d~v~~l~~G~iv~~g~~ 256 (605)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ ++|||++||+++ .+.+ .+|++++|++|+++..|+.
T Consensus 112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH
Confidence 999999999999999999999999999999999999999754 789999999997 4666 7999999999999999954
Q ss_pred hhHHHHHHh
Q 007383 257 ASLETFLLS 265 (605)
Q Consensus 257 ~~~~~~~~~ 265 (605)
+ +.+++.+
T Consensus 190 ~-~~~~~~~ 197 (200)
T cd03217 190 E-LALEIEK 197 (200)
T ss_pred H-HHhhhcc
Confidence 4 5444433
No 265
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.8e-41 Score=381.74 Aligned_cols=211 Identities=31% Similarity=0.484 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|++++|+ +.+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|++|+|.+||+
T Consensus 334 ~I~~~~vsf~y~----------------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~ 397 (588)
T PRK13657 334 AVEFDDVSFSYD----------------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397 (588)
T ss_pred eEEEEEEEEEeC----------------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 599999999994 2245999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
+++ ...+++.++||+|++.+++. |++||+.++. +. ..++++.++++..++.+. .|+.+ ..
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~---~~---~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~ 470 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR---PD---ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR 470 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC---CC---CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCC
Confidence 875 35678899999999999875 9999998752 11 113335555555555432 23332 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
.||||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|++++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~--~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLS--TVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHH--HHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999885 3689999999986 468899999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
++..|+.+++.
T Consensus 547 i~~~g~~~~l~ 557 (588)
T PRK13657 547 VVESGSFDELV 557 (588)
T ss_pred EEEeCCHHHHH
Confidence 99999988774
No 266
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.2e-41 Score=335.90 Aligned_cols=204 Identities=26% Similarity=0.362 Sum_probs=171.9
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|++++++. +.+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus 3 l~~~~l~~~~~~---------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 67 (221)
T cd03244 3 IEFKNVSLRYRP---------------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVD 67 (221)
T ss_pred EEEEEEEEecCC---------------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE
Confidence 789999998831 23469999999999999999999999999999999999999999999999998
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-----------cccccC
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-----------STRLAH 169 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~ 169 (605)
+.. ..+++.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+.. +.. +.
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~-~~ 138 (221)
T cd03244 68 ISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEG-GE 138 (221)
T ss_pred hHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccC-CC
Confidence 642 345678999999998776 599999864321 11 23455566666665443 234 58
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++. +. .+|++++|++|+
T Consensus 139 ~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~-~~-~~d~i~~l~~g~ 214 (221)
T cd03244 139 NLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDT-II-DSDRILVLDKGR 214 (221)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH-Hh-hCCEEEEEECCe
Confidence 9999999999999999999999999999999999999999999999853 5899999999974 54 599999999999
Q ss_pred EEEecC
Q 007383 250 VVHHGT 255 (605)
Q Consensus 250 iv~~g~ 255 (605)
+++.|+
T Consensus 215 ~~~~~~ 220 (221)
T cd03244 215 VVEFDS 220 (221)
T ss_pred EEecCC
Confidence 998775
No 267
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=375.93 Aligned_cols=213 Identities=21% Similarity=0.361 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++|+++.+ + .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|
T Consensus 264 ~~l~~~~l~~~~-----------------~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g 324 (510)
T PRK09700 264 TVFEVRNVTSRD-----------------R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG 324 (510)
T ss_pred cEEEEeCccccC-----------------C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC
Confidence 469999999753 1 289999999999999999999999999999999999999999999999
Q ss_pred eeCCc----ccccCceEEEcCC---CCCCCCCCHHHHHHHHHhcC--------CC-ChhHHHHHHHHHHHHcCCc-cccc
Q 007383 102 SPIKP----SSFRKLSAYVPQH---DACIPSLTVYETFLFSARLL--------VP-KTSQIDTIITVLLTELRLA-HLAS 164 (605)
Q Consensus 102 ~~~~~----~~~~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~~~--------~~-~~~~~~~~v~~~l~~l~L~-~~~~ 164 (605)
+++.. ...++.+||++|+ ..+++.+||.||+.+..... +. ...+.+++++++++.+|+. +..+
T Consensus 325 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 404 (510)
T PRK09700 325 KDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVN 404 (510)
T ss_pred EECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCcc
Confidence 88742 1235679999998 46888999999998753211 10 1223345678999999996 6677
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 165 TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 165 ~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
+. +++|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++ |.|||++|||++ ++.++||++++
T Consensus 405 ~~-~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~-~~~~~~d~i~~ 481 (510)
T PRK09700 405 QN-ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELP-EIITVCDRIAV 481 (510)
T ss_pred Cc-cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHhhCCEEEE
Confidence 77 4999999999999999999999999999999999999999999999999864 889999999997 58899999999
Q ss_pred EeCCeEEEecCh
Q 007383 245 LSKGSVVHHGTL 256 (605)
Q Consensus 245 l~~G~iv~~g~~ 256 (605)
|++|+++..++.
T Consensus 482 l~~G~i~~~~~~ 493 (510)
T PRK09700 482 FCEGRLTQILTN 493 (510)
T ss_pred EECCEEEEEecC
Confidence 999999988765
No 268
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.3e-41 Score=345.16 Aligned_cols=210 Identities=25% Similarity=0.330 Sum_probs=180.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|+++.|+. +...+|+|+|++|++||+++|+||||||||||+++|+|+++ .+|+|.++|.
T Consensus 2 ~i~~~nls~~~~~---------------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~ 65 (275)
T cd03289 2 QMTVKDLTAKYTE---------------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGV 65 (275)
T ss_pred eEEEEEEEEEeCC---------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE
Confidence 3789999999941 23459999999999999999999999999999999999998 7999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCC---------
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN--------- 170 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~--------- 170 (605)
++. ...+++.++|++|++.+++. |++||+..... . .++++.+.++.+||.+..++. +.+
T Consensus 66 ~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~---~----~~~~~~~~l~~~gL~~~~~~~-p~~l~~~~~~~g 136 (275)
T cd03289 66 SWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK---W----SDEEIWKVAEEVGLKSVIEQF-PGQLDFVLVDGG 136 (275)
T ss_pred EhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC---C----CHHHHHHHHHHcCCHHHHHhC-cccccceecCCC
Confidence 874 23567889999999999875 99999963211 1 124567788899998766655 355
Q ss_pred --CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 171 --LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 171 --LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. .++|||+++|+++ .+. .+||+++|++|
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~-~i~-~~dri~vl~~G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIE-AML-ECQRFLVIEEN 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHH-HHH-hCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999874 3789999999996 454 59999999999
Q ss_pred eEEEecChhhHHH
Q 007383 249 SVVHHGTLASLET 261 (605)
Q Consensus 249 ~iv~~g~~~~~~~ 261 (605)
++++.|+++++..
T Consensus 213 ~i~~~g~~~~l~~ 225 (275)
T cd03289 213 KVRQYDSIQKLLN 225 (275)
T ss_pred eEeecCCHHHHhh
Confidence 9999999998743
No 269
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3e-41 Score=390.36 Aligned_cols=212 Identities=29% Similarity=0.451 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||+++|+ .++.+|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|++||.
T Consensus 473 ~I~~~~vsf~y~----------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 473 DIVINDVSYSYG----------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred cEEEEEEEEEcC----------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 599999999993 2356999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. ...+|+.+|||+|++.+|+. |++||+.++... . ..++++.++++..++.+. .|+.+ ..
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~--~---~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE--N---VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC--C---CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 863 45788999999999999876 999999986321 1 113345556666655432 23433 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|++|+||||||+||+.+.+.+.+.|+++ .++|+|+++|+++ ..+.+|+|++|++|+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999985 2689999999997 467899999999999
Q ss_pred EEEecChhhHHH
Q 007383 250 VVHHGTLASLET 261 (605)
Q Consensus 250 iv~~g~~~~~~~ 261 (605)
++..|+.+++.+
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999988743
No 270
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.1e-41 Score=327.60 Aligned_cols=178 Identities=31% Similarity=0.449 Sum_probs=155.5
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-----ccccCceEEEcCCCC--CCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-----SSFRKLSAYVPQHDA--CIP 124 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~--l~~ 124 (605)
.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.++|++|++. ++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF- 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-
Confidence 3569999999999999999999999999999999999999999999999998741 134567999999973 44
Q ss_pred CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007383 125 SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSR 204 (605)
Q Consensus 125 ~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~ 204 (605)
..||+||+.+.....+.+.++.+++++++++.+|+.+..++.+ .+||||||||++|||||+.+|++++|||||+|||+.
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 4799999998754333333445667889999999988777774 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
++..+.+.|++++++ |+|||++||+++
T Consensus 162 ~~~~~~~~l~~~~~~-~~tili~sH~~~ 188 (190)
T TIGR01166 162 GREQMLAILRRLRAE-GMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEeeccc
Confidence 999999999999764 889999999986
No 271
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-41 Score=358.66 Aligned_cols=216 Identities=31% Similarity=0.454 Sum_probs=185.0
Q ss_pred CCCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007383 18 PLKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97 (605)
Q Consensus 18 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I 97 (605)
..+.-.|+|+||+++|. ++++||+++||+|++||-+||+|+|||||||++|+|.+... .+|+|
T Consensus 346 ~~~~~~I~F~dV~f~y~----------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I 408 (591)
T KOG0057|consen 346 ELFGGSIEFDDVHFSYG----------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI 408 (591)
T ss_pred ccCCCcEEEEeeEEEeC----------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE
Confidence 33344499999999993 34559999999999999999999999999999999999999 99999
Q ss_pred EECCeeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccc-------ccc
Q 007383 98 LLNSSPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAS-------TRL 167 (605)
Q Consensus 98 ~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~~ 167 (605)
++||++++ .+.+|+.|||||||..+|++ ||.+|+.|+.. ..-.+++.++.+..|+.+... +.+
T Consensus 409 ~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~------sas~eeV~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 409 LIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP------SASDEEVVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred EECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC------CcCHHHHHHHHHHcCcHHHHHhccccchhhH
Confidence 99999974 56789999999999999875 99999998742 112345666677777754322 222
Q ss_pred ---cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 168 ---AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 168 ---~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
...|||||||||++|||+++||+|+++|||||.||..+..++++.+.+.. .++|+|++.|+.+ ....||+|++
T Consensus 482 GerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~--ll~~~DkI~~ 557 (591)
T KOG0057|consen 482 GERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLD--LLKDFDKIIV 557 (591)
T ss_pred hhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecch--hHhcCCEEEE
Confidence 35699999999999999999999999999999999999999999999943 5899999999986 5788999999
Q ss_pred EeCCeEEEecChhhHHH
Q 007383 245 LSKGSVVHHGTLASLET 261 (605)
Q Consensus 245 l~~G~iv~~g~~~~~~~ 261 (605)
|++|++...|+.+++..
T Consensus 558 l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 558 LDNGTVKEYGTHSELLA 574 (591)
T ss_pred EECCeeEEeccHHHHhh
Confidence 99999999999999864
No 272
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-41 Score=374.08 Aligned_cols=209 Identities=25% Similarity=0.279 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~-----------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~ 65 (490)
T PRK10938 3 SLQISQGTFRLS-----------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFS 65 (490)
T ss_pred eEEEEeEEEEcC-----------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCc
Confidence 599999999982 346999999999999999999999999999999999999999999999997
Q ss_pred eCCc---ccccCceEEEcCCCCC--C------CCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCC
Q 007383 103 PIKP---SSFRKLSAYVPQHDAC--I------PSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNL 171 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l--~------~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~L 171 (605)
++.. ...++.++|++|++.. + ..+||+|++.+. .+.+++++++++.+|+.+..++.+ .+|
T Consensus 66 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~-~~L 136 (490)
T PRK10938 66 HITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRF-KYL 136 (490)
T ss_pred ccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCc-ccC
Confidence 6532 2344569999998642 1 146888887532 123567889999999988777774 999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|+++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFD-EIPDFVQFAGVLADCTLA 214 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 889999999998 588999999999999999
Q ss_pred EecChhhH
Q 007383 252 HHGTLASL 259 (605)
Q Consensus 252 ~~g~~~~~ 259 (605)
..|+++++
T Consensus 215 ~~~~~~~~ 222 (490)
T PRK10938 215 ETGEREEI 222 (490)
T ss_pred EeCCHHHH
Confidence 99998775
No 273
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.8e-41 Score=336.67 Aligned_cols=211 Identities=28% Similarity=0.461 Sum_probs=174.3
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
..-+++++|+++.|+. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 8 ~~~~l~~~~l~~~~~~--------------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 73 (226)
T cd03248 8 LKGIVKFQNVTFAYPT--------------RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLL 73 (226)
T ss_pred cCceEEEEEEEEEeCC--------------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 3446999999999841 11246999999999999999999999999999999999999999999999
Q ss_pred CCeeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCh-hH--HHHHHHHHHHHc--CCcccccccccCCC
Q 007383 100 NSSPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKT-SQ--IDTIITVLLTEL--RLAHLASTRLAHNL 171 (605)
Q Consensus 100 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~--~~~~v~~~l~~l--~L~~~~~~~~~~~L 171 (605)
+|+++.. ...++.++|++|++.+++ .||+||+.+......... .+ .+..+++.++.+ |+.+..++. +++|
T Consensus 74 ~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-~~~L 151 (226)
T cd03248 74 DGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-GSQL 151 (226)
T ss_pred CCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-CCcC
Confidence 9987642 234567999999998876 599999987543211100 01 112356778888 787766766 4999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++. +. .+|++++|++|++
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~-~~-~~d~i~~l~~g~i 226 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLST-VE-RADQILVLDGGRI 226 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHH-HH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999999864 5899999999984 64 5999999999874
No 274
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-41 Score=360.10 Aligned_cols=215 Identities=30% Similarity=0.394 Sum_probs=194.5
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...++++|++++| +..++|+||||++++||++||+|+||||||||+|+|+|.++|++|+|.+|
T Consensus 6 ~~ll~~~~i~K~F-----------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~ 68 (500)
T COG1129 6 PPLLELRGISKSF-----------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILID 68 (500)
T ss_pred cceeeeecceEEc-----------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEEC
Confidence 3469999999999 56789999999999999999999999999999999999999999999999
Q ss_pred CeeCC---c-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 007383 101 SSPIK---P-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV----PKTSQIDTIITVLLTELRLAHLASTRLAHNLS 172 (605)
Q Consensus 101 g~~~~---~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~----~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LS 172 (605)
|++.. + +.....|+.|+|+..+.|+|||.||+.++..... .+.++..++.+++|+.+|+....++++ ++||
T Consensus 69 G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-~~Ls 147 (500)
T COG1129 69 GKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-GDLS 147 (500)
T ss_pred CEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-hhCC
Confidence 99874 2 2344679999999999999999999998765422 255677888999999999964467775 9999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
+||||.|.|||||..++++|+|||||+.|+......+.++++++++ +|.+||++||.++ |++++|||+.+|.||+.+.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRLD-EVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEee
Confidence 9999999999999999999999999999999999999999999985 5999999999998 7999999999999999998
Q ss_pred ecC
Q 007383 253 HGT 255 (605)
Q Consensus 253 ~g~ 255 (605)
.++
T Consensus 226 ~~~ 228 (500)
T COG1129 226 TRP 228 (500)
T ss_pred ecc
Confidence 887
No 275
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.5e-41 Score=328.11 Aligned_cols=195 Identities=26% Similarity=0.371 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 1 ml~~~~l~~~~~-----------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~ 63 (200)
T PRK13540 1 MLDVIELDFDYH-----------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ 63 (200)
T ss_pred CEEEEEEEEEeC-----------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCC
Confidence 478999999982 356999999999999999999999999999999999999999999999998
Q ss_pred eCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 103 PIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
++.. ..+++.++|++|+..+++.+||+||+.+..... . .+..++++++.+++.+..++. +.+||||||||++
T Consensus 64 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~~rv~ 137 (200)
T PRK13540 64 SIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS---P--GAVGITELCRLFSLEHLIDYP-CGLLSSGQKRQVA 137 (200)
T ss_pred ccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCchhhhCC-hhhcCHHHHHHHH
Confidence 8742 345678999999988888999999999864321 1 134678899999998766666 4899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~ 243 (605)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||++||++.. .+.+|...
T Consensus 138 laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchh--ccccchhh
Confidence 99999999999999999999999999999999999865 48899999999864 46677544
No 276
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-42 Score=316.19 Aligned_cols=196 Identities=30% Similarity=0.477 Sum_probs=176.0
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCC---cccccCceEEEcCCCCCCCCCC
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK---PSSFRKLSAYVPQHDACIPSLT 127 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lT 127 (605)
+...||+++|+++++||..+|.||||||||||+|+++.+.+|++|++++.|++++ +..+|+.++|+.|.+.+|+. |
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-t 92 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-T 92 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-c
Confidence 4567999999999999999999999999999999999999999999999999975 56799999999999999986 9
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 007383 128 VYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAF 207 (605)
Q Consensus 128 v~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~ 207 (605)
|++|+.|..+++... ...++..++++.+++.+..-++.+.+||||||||++|+|.|..-|+||+||||||+||+.+++
T Consensus 93 VeDNlifP~~~r~rr--~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr 170 (223)
T COG4619 93 VEDNLIFPWQIRNRR--PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170 (223)
T ss_pred hhhccccchHHhccC--CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHH
Confidence 999999998774321 134567788999999765433335999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 208 NVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 208 ~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
+|-++|.++.++++++|+.+|||++ +..+++|+++-+..|++
T Consensus 171 ~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 171 NIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 9999999998778899999999998 57899999999999876
No 277
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-40 Score=358.04 Aligned_cols=196 Identities=22% Similarity=0.350 Sum_probs=171.2
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|.+. ++.+...+.+.+|++||+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL 106 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------LIAISSGLNGQLTGIENI 106 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------eEEeccccCCCCcHHHHH
Confidence 5699999999999999999999999999999999999999999999999752 122234566778999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~ 212 (605)
.+.....+.+.++..++++++++.+++.+..++.+ ++||||||||++|||||+.+|++|||||||+|||+.++..+.+.
T Consensus 107 ~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~-~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Llel 185 (549)
T PRK13545 107 ELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV-KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDK 185 (549)
T ss_pred HhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc-ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 88654333334455567888999999988877774 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 007383 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261 (605)
Q Consensus 213 L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~ 261 (605)
|+++++ .|+|||++||+++ ++.++||++++|++|+++..|+++++..
T Consensus 186 L~el~~-~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 186 MNEFKE-QGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999975 4889999999997 5888999999999999999999988754
No 278
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1e-40 Score=371.23 Aligned_cols=220 Identities=22% Similarity=0.366 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEEC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLN 100 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~ 100 (605)
.+|+++|+++.+.. .+.+.+|+|+||++++||+++|+||||||||||||+|+|+.+| ++|+|.++
T Consensus 256 ~~l~~~~l~~~~~~--------------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~ 321 (500)
T TIGR02633 256 VILEARNLTCWDVI--------------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFIN 321 (500)
T ss_pred ceEEEeCCcccccc--------------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEEC
Confidence 46999999987621 1134699999999999999999999999999999999999985 89999999
Q ss_pred CeeCCc----ccccCceEEEcCCC---CCCCCCCHHHHHHHHHh--cC---CCChhHHHHHHHHHHHHcCCcc-cccccc
Q 007383 101 SSPIKP----SSFRKLSAYVPQHD---ACIPSLTVYETFLFSAR--LL---VPKTSQIDTIITVLLTELRLAH-LASTRL 167 (605)
Q Consensus 101 g~~~~~----~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~--~~---~~~~~~~~~~v~~~l~~l~L~~-~~~~~~ 167 (605)
|+++.. ...++.+||++|+. .+++.+||+||+.++.. .. .....+.+++++++++.+++.+ ..++.
T Consensus 322 g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 400 (500)
T TIGR02633 322 GKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP- 400 (500)
T ss_pred CEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-
Confidence 998742 23456799999995 58889999999987532 11 1122334567889999999964 45666
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |.|||++|||++ ++.++||++++|++
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~-~~~~~~d~v~~l~~ 478 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELA-EVLGLSDRVLVIGE 478 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999999865 889999999998 58899999999999
Q ss_pred CeEEEecChhh
Q 007383 248 GSVVHHGTLAS 258 (605)
Q Consensus 248 G~iv~~g~~~~ 258 (605)
|+++..++.++
T Consensus 479 G~i~~~~~~~~ 489 (500)
T TIGR02633 479 GKLKGDFVNHA 489 (500)
T ss_pred CEEEEEEcccc
Confidence 99998776544
No 279
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.2e-40 Score=322.15 Aligned_cols=172 Identities=29% Similarity=0.510 Sum_probs=155.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~l~~~~l~~~~---------------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (182)
T cd03215 4 VLEVRGLSVKG---------------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGK 62 (182)
T ss_pred EEEEeccEEEe---------------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 58899998743 899999999999999999999999999999999999999999999999
Q ss_pred eCCc----ccccCceEEEcCCC---CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKP----SSFRKLSAYVPQHD---ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~----~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++.. ...++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------LS~G~ 109 (182)
T cd03215 63 PVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------LSGGN 109 (182)
T ss_pred ECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------cCHHH
Confidence 8742 23467899999984 57888999999976421 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|||++||+||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+++|++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999754 789999999987 58899999999999874
No 280
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.8e-40 Score=374.74 Aligned_cols=215 Identities=32% Similarity=0.481 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.++++|+++.|+ +++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||
T Consensus 327 ~~I~f~~vsf~y~----------------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg 390 (567)
T COG1132 327 GSIEFENVSFSYP----------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG 390 (567)
T ss_pred CeEEEEEEEEEcC----------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence 3499999999994 256799999999999999999999999999999999999999999999999
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHH-----HHHHHcCCcccccccc---cCC
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIIT-----VLLTELRLAHLASTRL---AHN 170 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~-----~~l~~l~L~~~~~~~~---~~~ 170 (605)
++++ ...+|+.++||+|++.+|. -||+||+.++..- .++++..+.++ +.++.+ .+..|+.+ ...
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G~~ 465 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVN 465 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhC--cccccceecCCCcc
Confidence 9875 4678999999999999998 6999999987421 12333333222 223333 22345554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||||||||++||||++++|++|+||||||+||+.+...+.+.++++.+ ++|+|+++|.++. +.+ +|+|++|++|++
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlst-i~~-aD~IiVl~~G~i 541 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLST-IKN-ADRIIVLDNGRI 541 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhH-HHh-CCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998863 5799999999974 544 999999999999
Q ss_pred EEecChhhHHH
Q 007383 251 VHHGTLASLET 261 (605)
Q Consensus 251 v~~g~~~~~~~ 261 (605)
++.|+.+++..
T Consensus 542 ~e~G~h~eLl~ 552 (567)
T COG1132 542 VERGTHEELLA 552 (567)
T ss_pred EEecCHHHHHH
Confidence 99999999854
No 281
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=369.42 Aligned_cols=202 Identities=23% Similarity=0.373 Sum_probs=176.5
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc----ccccCceEEEcCCC---CCCCCCC
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP----SSFRKLSAYVPQHD---ACIPSLT 127 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~---~l~~~lT 127 (605)
+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+|||+|++ .+++.+|
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 6999999999999999999999999999999999999999999999988742 12456799999995 5788899
Q ss_pred HHHHHHHHHhc-C----C-CChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 007383 128 VYETFLFSARL-L----V-PKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSG 200 (605)
Q Consensus 128 v~e~l~~~~~~-~----~-~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsg 200 (605)
|.||+.+.... . + .+.++.+++++++++.+++. +..++. +++|||||||||+||++|+.+|++|||||||+|
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 99999875321 1 1 12234456788999999995 567777 499999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 201 LDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 201 LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
||+.++..+.++|++++++ |.|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 426 LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 426 VDVGAKKEIYQLINQFKAE-GLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999765 899999999998 58899999999999999999988765
No 282
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=7.4e-41 Score=323.16 Aligned_cols=177 Identities=37% Similarity=0.604 Sum_probs=155.7
Q ss_pred EEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 25 TGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 25 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
+++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus 1 ~~~~l~~~~~-----------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~ 63 (180)
T cd03214 1 EVENLSVGYG-----------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL 63 (180)
T ss_pred CeeEEEEEEC-----------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 4689999882 35699999999999999999999999999999999999999999999999987
Q ss_pred Cc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 105 KP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 105 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
.. ..+++.++|++| +++.+|+.+..++. ++.||||||||++|
T Consensus 64 ~~~~~~~~~~~i~~~~q----------------------------------~l~~~gl~~~~~~~-~~~LS~G~~qrl~l 108 (180)
T cd03214 64 ASLSPKELARKIAYVPQ----------------------------------ALELLGLAHLADRP-FNELSGGERQRVLL 108 (180)
T ss_pred CcCCHHHHHHHHhHHHH----------------------------------HHHHcCCHhHhcCC-cccCCHHHHHHHHH
Confidence 42 234456788887 56677777666666 48999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||+|+.+|++++|||||+|||+.++..+.+.|++++++.++|||++||+++ ++.+++|++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999997654789999999998 478999999999999998653
No 283
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=370.48 Aligned_cols=220 Identities=30% Similarity=0.410 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++.|+. ..+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.+||+
T Consensus 4 ~l~~~nl~~~y~~-------------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 70 (648)
T PRK10535 4 LLELKDIRRSYPS-------------GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQ 70 (648)
T ss_pred EEEEeeEEEEeCC-------------CCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 6999999999841 112357999999999999999999999999999999999999999999999999
Q ss_pred eCCc---cc----ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKP---SS----FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~---~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++.. .+ .++.++|++|++.+++.+|+.||+.+.....+...++.++++.++++.+|+.+..++. ++.|||||
T Consensus 71 ~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-~~~LS~Gq 149 (648)
T PRK10535 71 DVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-PSQLSGGQ 149 (648)
T ss_pred EcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-cccCCHHH
Confidence 8753 12 2467999999999999999999999865433333445667889999999999887777 49999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
|||++|||+|+.+|++|+|||||+|||+.+++.+.++|+++++ .|+|+|++||+++ ..+.+|++++|++|++++.|+
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999975 4899999999987 346799999999999999998
Q ss_pred hhhH
Q 007383 256 LASL 259 (605)
Q Consensus 256 ~~~~ 259 (605)
.++.
T Consensus 227 ~~~~ 230 (648)
T PRK10535 227 AQEK 230 (648)
T ss_pred cccc
Confidence 7654
No 284
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.2e-40 Score=372.22 Aligned_cols=216 Identities=29% Similarity=0.495 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|++++|+. +++.+|+|+|+++++||.++|+||||||||||+|+|+|+++|++|+|.+||+
T Consensus 316 ~i~~~~v~~~y~~---------------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 380 (544)
T TIGR01842 316 HLSVENVTIVPPG---------------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGA 380 (544)
T ss_pred eEEEEEEEEEcCC---------------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 5999999999941 2357999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHc--CCcccccccccCCCC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDT-----IITVLLTEL--RLAHLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~~LS 172 (605)
++. ...+++.++||+|++.+++. |++||+.+... ..++++..+ ..++.++.+ |++...+.. ...||
T Consensus 381 ~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~-g~~LS 456 (544)
T TIGR01842 381 DLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPG-GATLS 456 (544)
T ss_pred ehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCC-cCCCC
Confidence 874 34578899999999999976 99999985421 112222111 123344444 343333333 47899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++.+ .++|+|+++|+++ ..+.+|++++|++|++++
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRIAR 533 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999864 4789999999996 457899999999999999
Q ss_pred ecChhhHH
Q 007383 253 HGTLASLE 260 (605)
Q Consensus 253 ~g~~~~~~ 260 (605)
.|+.+++.
T Consensus 534 ~g~~~~l~ 541 (544)
T TIGR01842 534 FGERDEVL 541 (544)
T ss_pred eCCHHHHh
Confidence 99988764
No 285
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.6e-40 Score=337.21 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|+++.++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+
T Consensus 19 ~i~~~~l~~~~~~---------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~ 83 (257)
T cd03288 19 EIKIHDLCVRYEN---------------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI 83 (257)
T ss_pred eEEEEEEEEEeCC---------------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence 4999999999831 1246999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHc--CCcccccccccCCCC
Q 007383 103 PIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDT-----IITVLLTEL--RLAHLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~~LS 172 (605)
++.. ..+++.++|++|++.+++ .|++||+..... .......+ .+++.++.+ +++...+.. +.+||
T Consensus 84 ~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~-~~~LS 158 (257)
T cd03288 84 DISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG-GENFS 158 (257)
T ss_pred EhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccC-CCcCC
Confidence 8742 345678999999998876 599999853211 01111111 123334444 444444444 48999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ + +.|||++||+++. +.. +|++++|++|+++.
T Consensus 159 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~-~~~-~dri~~l~~G~i~~ 234 (257)
T cd03288 159 VGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVST-ILD-ADLVLVLSRGILVE 234 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHH-HHh-CCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999974 3 7899999999984 554 99999999999999
Q ss_pred ecChhhHH
Q 007383 253 HGTLASLE 260 (605)
Q Consensus 253 ~g~~~~~~ 260 (605)
.|+++++.
T Consensus 235 ~g~~~~~~ 242 (257)
T cd03288 235 CDTPENLL 242 (257)
T ss_pred eCCHHHHH
Confidence 99988764
No 286
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.8e-40 Score=319.82 Aligned_cols=176 Identities=31% Similarity=0.532 Sum_probs=156.2
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.+.. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 i~~~~~~~~~~~---------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~ 65 (178)
T cd03247 1 LSINNVSFSYPE---------------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP 65 (178)
T ss_pred CEEEEEEEEeCC---------------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEE
Confidence 478999998831 12369999999999999999999999999999999999999999999999997
Q ss_pred CCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 104 IKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 104 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+.. ..+++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i-----------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 66 VSDLEKALSSLISVLNQRPYLFD-TTLRNNL-----------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHHHHHHHHhhEEEEccCCeeec-ccHHHhh-----------------------------------cccCCHHHHHHHHH
Confidence 642 345677999999988776 6998886 37899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||+|+.+|++++|||||+|||+.++..+.+.|++++ + +.|||++||+++. + +.+|++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999985 3 7899999999974 5 469999999999998754
No 287
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.6e-40 Score=374.25 Aligned_cols=214 Identities=32% Similarity=0.509 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++||+++|+. ..++.+|+|+|++++|||.++|+||||||||||+|+|+|+++|.+|+|.+||
T Consensus 336 ~~i~~~~v~f~y~~--------------~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 336 GEIEFEQVNFAYPA--------------RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred ceEEEEEEEEECCC--------------CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 35999999999942 1225799999999999999999999999999999999999999999999999
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---c
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---A 168 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~ 168 (605)
.+++ ...+++.++|+||++.+++. |++||+.++. +. ..++++.++++..++.+.. ++.+ .
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~---~~---~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g 474 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR---PD---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERG 474 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC---CC---CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCC
Confidence 9874 35677889999999998865 9999998752 11 1134455666666654322 2222 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
..||||||||++||||++++|++++||||||+||+.+++.+.+.|+++. .++|+|++||+++ ..+.+|++++|++|
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~--~~~~~d~vi~l~~g 550 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLA--TVLKADRIVVMDQG 550 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999999985 3689999999986 46789999999999
Q ss_pred eEEEecChhhHH
Q 007383 249 SVVHHGTLASLE 260 (605)
Q Consensus 249 ~iv~~g~~~~~~ 260 (605)
+++..|+.+++.
T Consensus 551 ~~~~~g~~~~l~ 562 (576)
T TIGR02204 551 RIVAQGTHAELI 562 (576)
T ss_pred EEEeeecHHHHH
Confidence 999999988763
No 288
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.7e-40 Score=318.61 Aligned_cols=170 Identities=34% Similarity=0.587 Sum_probs=152.6
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|++++++. ..+.+++|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 i~~~~l~~~~~~---------------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~ 65 (173)
T cd03246 1 LEVENVSFRYPG---------------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGAD 65 (173)
T ss_pred CEEEEEEEEcCC---------------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEE
Confidence 468999998831 12469999999999999999999999999999999999999999999999988
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
+.. ..+++.++|++|++.+++. ||+||+ ||||||||++
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l--------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 66 ISQWDPNELGDHVGYLPQDDELFSG-SIAENI--------------------------------------LSGGQRQRLG 106 (173)
T ss_pred cccCCHHHHHhheEEECCCCccccC-cHHHHC--------------------------------------cCHHHHHHHH
Confidence 742 3456789999999988874 999886 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+ +.+|++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 99999999999999999999999999999999999975 4899999999997 35 68999999999874
No 289
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.6e-40 Score=325.30 Aligned_cols=199 Identities=26% Similarity=0.323 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 6 ~l~~~~l~~~~~~---------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 70 (207)
T cd03369 6 EIEVENLSVRYAP---------------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGI 70 (207)
T ss_pred eEEEEEEEEEeCC---------------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE
Confidence 4899999999831 1246999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
++. ....++.++|++|++.+++ .|++||+.+... .. .+.+.+.++ .++. +..||||||||+
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~---~~----~~~~~~~l~-------~~~~-~~~LS~G~~qrv 134 (207)
T cd03369 71 DISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDE---YS----DEEIYGALR-------VSEG-GLNLSQGQRQLL 134 (207)
T ss_pred EhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCC---CC----HHHHHHHhh-------ccCC-CCcCCHHHHHHH
Confidence 863 2245678999999998876 599999965321 11 122333333 2344 489999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++ + |+|+|++||+++. +.. +|++++|++|+++..|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999984 3 7899999999974 554 999999999999887753
No 290
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=332.21 Aligned_cols=196 Identities=28% Similarity=0.458 Sum_probs=178.2
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-------ccccCceEEEcCCCCCCCCCCHH
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-------SSFRKLSAYVPQHDACIPSLTVY 129 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~ 129 (605)
=++++..+.-.++||.|+||||||||+|+|+|+.+|++|.|.+||+-+.. ...++++||||||-.+||.+||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 36778887757999999999999999999999999999999999986521 23467899999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 007383 130 ETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNV 209 (605)
Q Consensus 130 e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i 209 (605)
.||.|+.... .....+++.+.+|++|..++. |..|||||||||+|||||+++|++|+||||.+.||...+.++
T Consensus 95 gNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~-P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei 167 (352)
T COG4148 95 GNLRYGMWKS------MRAQFDQLVALLGIEHLLDRY-PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI 167 (352)
T ss_pred cchhhhhccc------chHhHHHHHHHhCcHHHHhhC-CCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH
Confidence 9999986531 344577889999999999887 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 210 MQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 210 ~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
+-.|++++++-+..|+.+||.+. |+.+++|+|++|.+|++...|+.+++.
T Consensus 168 lpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 168 LPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred HHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHh
Confidence 99999999999999999999998 799999999999999999999999874
No 291
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.5e-40 Score=381.76 Aligned_cols=213 Identities=29% Similarity=0.452 Sum_probs=179.2
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.++++||+++|+. +.+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||
T Consensus 454 ~~i~~~~vsf~y~~---------------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 454 GAITFENIRFRYAP---------------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CeEEEEEEEEEcCC---------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 35999999999941 235699999999999999999999999999999999999999999999999
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---c
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---A 168 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~ 168 (605)
.+++ ...+|+.++||+|++.+++. |++||+.++. +. ..++.+.++++..++.+. .|+.+ .
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~---~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN---PG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC---CC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 9874 35678899999999998874 9999998742 11 112334445555554332 22222 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
.+||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++. .++|+|++||+++. .+.+|++++|++|
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~--~~~~d~ii~l~~G 667 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLST--VRACDRIIVLEKG 667 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHH--HHhCCEEEEEeCC
Confidence 6899999999999999999999999999999999999999999999985 37899999999973 4669999999999
Q ss_pred eEEEecChhhHH
Q 007383 249 SVVHHGTLASLE 260 (605)
Q Consensus 249 ~iv~~g~~~~~~ 260 (605)
++++.|+.+++.
T Consensus 668 ~i~~~g~~~~l~ 679 (694)
T TIGR01846 668 QIAESGRHEELL 679 (694)
T ss_pred EEEEeCCHHHHH
Confidence 999999998874
No 292
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.3e-40 Score=374.30 Aligned_cols=213 Identities=29% Similarity=0.427 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||+++|+. .++.+|+|+|+++++||.++|+|+||||||||+++|+|+++|.+|+|.+||.
T Consensus 330 ~i~~~~v~f~y~~---------------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 330 DVEFRNVTFRYPG---------------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred eEEEEEEEEEcCC---------------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 5999999999941 2356999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
+++ ...+++.++||+|++.+++. |++||+.++.. ++..+++++++++.+|+.+. .|+.+ ..
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~ 468 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT-----EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC-----CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCC
Confidence 864 35678889999999998875 99999987631 11224556667777776543 23333 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
.||||||||++|||+++++|++++||||||+||+.+++.+.+.|+++++ ++|+|++||+++ ..+.+|+|++|++|+
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~--~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLS--TIEKADRIVVMDDGR 544 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhH--HHHhCCEEEEEeCCE
Confidence 6999999999999999999999999999999999999999999999853 689999999986 578899999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
++..|+.+++.
T Consensus 545 i~~~g~~~~l~ 555 (571)
T TIGR02203 545 IVERGTHNELL 555 (571)
T ss_pred EEeeCCHHHHH
Confidence 99999998874
No 293
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.9e-40 Score=329.84 Aligned_cols=193 Identities=29% Similarity=0.450 Sum_probs=167.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCC--CCCCHHHHHHHHHhc
Q 007383 61 LTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACI--PSLTVYETFLFSARL 138 (605)
Q Consensus 61 ~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~ 138 (605)
+++++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ..++.++|++|++.++ ..+|+.||+.+....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 468999999999999999999999999999999999999998763 3456799999998763 347999999876321
Q ss_pred ----CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 007383 139 ----LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLK 214 (605)
Q Consensus 139 ----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~ 214 (605)
......+.++++.++++.+++.+..++.+ .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPV-GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11122234566889999999988777774 9999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 215 SISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 215 ~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+++++ |+|||++||+++ ++.+++|+++++ +|++++.|+.+++
T Consensus 158 ~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 158 ELAGA-GTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHc-CCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 99754 889999999998 588999999999 8999999998876
No 294
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.7e-40 Score=347.80 Aligned_cols=188 Identities=30% Similarity=0.493 Sum_probs=168.7
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHH
Q 007383 71 IVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTI 149 (605)
Q Consensus 71 ilG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~ 149 (605)
|+|||||||||||++|+|+++|++|+|.++|+++.. ...++.++|++|++.+++.+||+||+.|+....+.+.++.+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999999998743 2245679999999999999999999999865433334455678
Q ss_pred HHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC
Q 007383 150 ITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH 229 (605)
Q Consensus 150 v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H 229 (605)
++++++.++|.+..++. +++|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||
T Consensus 81 ~~~~l~~~~l~~~~~~~-~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 81 VLEALRLVQLEEFADRK-PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHcCCcchhcCC-hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 89999999999888877 49999999999999999999999999999999999999999999999998766899999999
Q ss_pred CCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 230 QPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 230 ~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
|++ ++.+++|++++|++|+++..|+++++.
T Consensus 160 d~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 160 DQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 997 588999999999999999999998873
No 295
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7e-40 Score=370.66 Aligned_cols=214 Identities=28% Similarity=0.430 Sum_probs=175.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|++++|+ +.+.+|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||.
T Consensus 334 ~i~~~~v~~~y~----------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 397 (585)
T TIGR01192 334 AVEFRHITFEFA----------------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397 (585)
T ss_pred eEEEEEEEEECC----------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE
Confidence 599999999984 2245899999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHH-----HHHHHHc--CCcccccccccCCCC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTII-----TVLLTEL--RLAHLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v-----~~~l~~l--~L~~~~~~~~~~~LS 172 (605)
++. ...+++.++||+|++.+++ .|++||+.++..- .++++..+.. .+.+..+ |++...+.. ..+||
T Consensus 398 ~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~--~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~-~~~LS 473 (585)
T TIGR01192 398 DINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGREG--ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGER-GNRLS 473 (585)
T ss_pred EhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccchhcCC-CCCCC
Confidence 874 3467889999999999886 5999999875311 1222222211 1122222 233222233 47899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
||||||++|||||+++|++|+|||||+|||+.+++.+.+.|+++. .++|||++||+++. .+.+|++++|++|+++.
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLST--VRNADLVLFLDQGRLIE 549 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHH--HHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999885 37899999999963 46799999999999999
Q ss_pred ecChhhHH
Q 007383 253 HGTLASLE 260 (605)
Q Consensus 253 ~g~~~~~~ 260 (605)
.|+.+++.
T Consensus 550 ~g~~~~l~ 557 (585)
T TIGR01192 550 KGSFQELI 557 (585)
T ss_pred ECCHHHHH
Confidence 99988774
No 296
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.3e-40 Score=347.86 Aligned_cols=214 Identities=29% Similarity=0.403 Sum_probs=194.5
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++.+++++.| +...+++|||+++++||+.||+|+||||||||+++|.|.++|++|+|.++|
T Consensus 3 ~~l~~~~itK~f-----------------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G 65 (501)
T COG3845 3 PALEMRGITKRF-----------------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG 65 (501)
T ss_pred ceEEEeccEEEc-----------------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECC
Confidence 358999999999 467899999999999999999999999999999999999999999999999
Q ss_pred eeCC---c-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-C--CCChhHHHHHHHHHHHHcCCcccccccccCCCCHH
Q 007383 102 SPIK---P-SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-L--VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174 (605)
Q Consensus 102 ~~~~---~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~--~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG 174 (605)
+++. + +..+..||+|+|+..+++++||.||+.++..- . ..+.++.+++++++.+..||.-..+.++ .+||-|
T Consensus 66 ~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-~dLsVG 144 (501)
T COG3845 66 KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-ADLSVG 144 (501)
T ss_pred EEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-ecCCcc
Confidence 9874 2 34567799999999999999999999998653 1 2256678889999999999987777785 999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
|||||.|-++|.++|++|||||||+-|-|....++++.|++++++ |+|||++||... |+.++|||+.+|.+|+++..-
T Consensus 145 ~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 145 EQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeee
Confidence 999999999999999999999999999999999999999999875 899999999998 799999999999999987655
Q ss_pred C
Q 007383 255 T 255 (605)
Q Consensus 255 ~ 255 (605)
+
T Consensus 223 ~ 223 (501)
T COG3845 223 D 223 (501)
T ss_pred c
Confidence 5
No 297
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=366.80 Aligned_cols=203 Identities=24% Similarity=0.370 Sum_probs=176.4
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc----ccccCceEEEcCCC---CCCCCC
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP----SSFRKLSAYVPQHD---ACIPSL 126 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~---~l~~~l 126 (605)
.+++|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|++|++ .+++.+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 38999999999999999999999999999999999999999999999988642 12356799999986 488899
Q ss_pred CHHHHHHHHHhcC----C--CChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 007383 127 TVYETFLFSARLL----V--PKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS 199 (605)
Q Consensus 127 Tv~e~l~~~~~~~----~--~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPts 199 (605)
|+.||+.+..... + .+..+.+++++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||||||+
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-MNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-ccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 9999998753211 0 01223345788999999994 5677774 9999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 200 GLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 200 gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
|||+.++.++.++|++++++ |.|||++|||++ ++.+++|++++|++|++++.|+++++
T Consensus 426 ~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 426 GIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred CCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999865 889999999998 58899999999999999999988764
No 298
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.8e-40 Score=368.60 Aligned_cols=212 Identities=28% Similarity=0.427 Sum_probs=178.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|++++|+. +++.+|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||+
T Consensus 313 ~I~~~~v~~~y~~---------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~ 377 (569)
T PRK10789 313 ELDVNIRQFTYPQ---------------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI 377 (569)
T ss_pred cEEEEEEEEECCC---------------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCE
Confidence 5899999999841 2356999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. ...+++.++||+|++.+++. |++||+.++..- .+ ++.+++.++..++.+. .++.+ ..
T Consensus 378 ~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~--~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~ 450 (569)
T PRK10789 378 PLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRPD--AT----QQEIEHVARLASVHDDILRLPQGYDTEVGERGV 450 (569)
T ss_pred EHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCCC--CC----HHHHHHHHHHcCCHHHHHhCcCcccceecCCCC
Confidence 874 34678889999999999875 999999875211 11 2334455555554321 22222 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
.||||||||++|||||+++|++++|||||++||+.++..+.+.|+++. +++|+|+++|+++ ..+.+|++++|++|+
T Consensus 451 ~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i~~l~~G~ 526 (569)
T PRK10789 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEILVMQHGH 526 (569)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999985 3789999999996 357799999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
++..|+.+++.
T Consensus 527 i~~~g~~~~l~ 537 (569)
T PRK10789 527 IAQRGNHDQLA 537 (569)
T ss_pred EEEecCHHHHH
Confidence 99999988774
No 299
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-40 Score=310.13 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=195.9
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++|||+++ +.-.+|+|+||++.+||+-+|+|||||||||++++|+|..+|++|+|+++|
T Consensus 4 ~iL~~~~vsVsF-----------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g 66 (249)
T COG4674 4 IILYLDGVSVSF-----------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66 (249)
T ss_pred ceEEEeceEEEE-----------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcC
Confidence 569999999999 456799999999999999999999999999999999999999999999999
Q ss_pred -eeCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHHHcCCccccccccc
Q 007383 102 -SPIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV--------PKTSQIDTIITVLLTELRLAHLASTRLA 168 (605)
Q Consensus 102 -~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~--------~~~~~~~~~v~~~l~~l~L~~~~~~~~~ 168 (605)
.++.. ...|..||--+|.|..|+++||+|||..+....+ +...+.+++++++|...||.+..+.. .
T Consensus 67 ~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-A 145 (249)
T COG4674 67 DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-A 145 (249)
T ss_pred chhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-h
Confidence 66642 2345678999999999999999999999865421 13345677999999999999888777 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
..||-||||++.|+.-++++|++|+||||++|+-.....+.-++|++++. +++|+++.||+.+ +.+++|+|.+|++|
T Consensus 146 ~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~F-vr~~A~~VTVlh~G 222 (249)
T COG4674 146 ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGF-VREIADKVTVLHEG 222 (249)
T ss_pred hhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHH-HHHhhheeEEEecc
Confidence 89999999999999999999999999999999999999999999999984 5799999999996 89999999999999
Q ss_pred eEEEecChhhHH
Q 007383 249 SVVHHGTLASLE 260 (605)
Q Consensus 249 ~iv~~g~~~~~~ 260 (605)
++...|+.+++.
T Consensus 223 ~VL~EGsld~v~ 234 (249)
T COG4674 223 SVLAEGSLDEVQ 234 (249)
T ss_pred ceeecccHHHhh
Confidence 999999998873
No 300
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=325.68 Aligned_cols=239 Identities=26% Similarity=0.349 Sum_probs=202.5
Q ss_pred ceEEEEeEEEEEecCCCCc------cccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 007383 22 YKLTGSSISYIKSNNSIIP------SFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG 95 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~------~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G 95 (605)
.++..+||++.|....+.+ +.++. ++.....+.+|+||+|++|++++.+|||||||||+||+|+|++.|++|
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~--~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G 79 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFH--RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcC--chhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCC
Confidence 3577889988876433221 11222 222345589999999999999999999999999999999999999999
Q ss_pred EEEECCeeCC--cccccCceEEEcCC-CCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 007383 96 TILLNSSPIK--PSSFRKLSAYVPQH-DACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLS 172 (605)
Q Consensus 96 ~I~~~g~~~~--~~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LS 172 (605)
.|.+||.+.- .+++-+.+++|+-+ -.+.-.+-+.|.+.....++..+.++.+++.+.+.+.++|+...+.++ +.||
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-r~LS 158 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPV-RKLS 158 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhh-hhcc
Confidence 9999998752 23455677887643 456666678888887665666677888999999999999998888886 9999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
-|||.|+.||.+|+++|++|||||||-|||..++.++.+.|++..++.+.||+.+||+.+ ++.++||||++|++|+++|
T Consensus 159 lGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 159 LGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred chHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEee
Confidence 999999999999999999999999999999999999999999999999999999999998 6999999999999999999
Q ss_pred ecChhhHHHHHH
Q 007383 253 HGTLASLETFLL 264 (605)
Q Consensus 253 ~g~~~~~~~~~~ 264 (605)
+|+.+++.+.|.
T Consensus 238 dg~l~~l~~~f~ 249 (325)
T COG4586 238 DGTLAQLQEQFG 249 (325)
T ss_pred cccHHHHHHHhC
Confidence 999999876553
No 301
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-39 Score=362.54 Aligned_cols=202 Identities=24% Similarity=0.369 Sum_probs=174.1
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc----cccCceEEEcCCC---CCCCCCC
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS----SFRKLSAYVPQHD---ACIPSLT 127 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~----~~~~~i~yv~Q~~---~l~~~lT 127 (605)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.++|++|++ .+++.+|
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 59999999999999999999999999999999999999999999999987421 1345799999984 4788899
Q ss_pred HHHHHHHHHh--c-CCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007383 128 VYETFLFSAR--L-LVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS 203 (605)
Q Consensus 128 v~e~l~~~~~--~-~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~ 203 (605)
+.||+..... . ......+.+++++++++.+|+. +..++++ ++|||||||||+||++|+.+|++|||||||+|||+
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence 9999864311 1 1111223345688999999997 6677774 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 204 RSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 204 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
.++..+.+.|++++++ |.|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 437 ~~~~~l~~~l~~l~~~-g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 437 SARNDIYQLIRSIAAQ-NVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred hHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999864 889999999998 58899999999999999999887654
No 302
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.4e-39 Score=315.50 Aligned_cols=193 Identities=21% Similarity=0.306 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|+++++. .+.+++ +|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~-----------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (195)
T PRK13541 1 MLSLHQLQFNIE-----------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC 62 (195)
T ss_pred CeEEEEeeEEEC-----------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCc
Confidence 378999999982 244555 99999999999999999999999999999999999999999998
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
++.... ++.++|++|++.+++.+||+||+.+...... .+++++++++.+++.+..++. +++||||||||++||
T Consensus 63 ~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~-~~~LS~G~~~rl~la 135 (195)
T PRK13541 63 NINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEK-CYSLSSGMQKIVAIA 135 (195)
T ss_pred ccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccC-hhhCCHHHHHHHHHH
Confidence 874322 3568999999888888999999988653321 234677888999998777777 499999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~ 243 (605)
++|+.+|++++|||||+|||+.++..+.+.|++.++ .|+|||+++|+++. .+.+|-+.
T Consensus 136 ~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 136 RLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCccc--cchhheec
Confidence 999999999999999999999999999999987754 57899999999973 34466553
No 303
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-39 Score=319.59 Aligned_cols=190 Identities=26% Similarity=0.425 Sum_probs=155.0
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCC--CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKP--PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
++++||++.+.. ++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--------------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g 66 (204)
T cd03250 1 ISVEDASFTWDS--------------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66 (204)
T ss_pred CEEeEEEEecCC--------------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence 478999998831 11 13699999999999999999999999999999999999999999999998
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCC-----------cccccccccCC
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRL-----------AHLASTRLAHN 170 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L-----------~~~~~~~~~~~ 170 (605)
.++|++|++.+++ .|++||+.+.... .. +...+.++.+++ +...+.. +.+
T Consensus 67 ----------~i~~~~q~~~l~~-~t~~enl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 127 (204)
T cd03250 67 ----------SIAYVSQEPWIQN-GTIRENILFGKPF---DE----ERYEKVIKACALEPDLEILPDGDLTEIGEK-GIN 127 (204)
T ss_pred ----------EEEEEecCchhcc-CcHHHHhccCCCc---CH----HHHHHHHHHcCcHHHHHhccCcccceecCC-CCc
Confidence 5899999998874 6999999875322 11 112223333332 2233344 489
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ-TLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+ ++++++++ |+|||++||+++ .+.. +|++++|++|+
T Consensus 128 lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999999999999999999999999999999998 56666554 789999999997 3565 99999999985
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=361.04 Aligned_cols=207 Identities=22% Similarity=0.304 Sum_probs=177.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++|++++| +.+.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|.
T Consensus 1 ml~i~~ls~~~-----------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~ 63 (530)
T PRK15064 1 MLSTANITMQF-----------------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN 63 (530)
T ss_pred CEEEEEEEEEe-----------------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 47899999998 3457999999999999999999999999999999999999999999999873
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-----------CCCC---------------------hhHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-----------LVPK---------------------TSQIDTII 150 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-----------~~~~---------------------~~~~~~~v 150 (605)
+.+||++|++.+++.+||+|++.++... ...+ ..+.++++
T Consensus 64 --------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (530)
T PRK15064 64 --------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARA 135 (530)
T ss_pred --------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHH
Confidence 3589999999889999999999875210 0000 01234578
Q ss_pred HHHHHHcCCcccc-cccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC
Q 007383 151 TVLLTELRLAHLA-STRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH 229 (605)
Q Consensus 151 ~~~l~~l~L~~~~-~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H 229 (605)
+++++.+|+.+.. +.. +.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||
T Consensus 136 ~~~l~~~gl~~~~~~~~-~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsH 210 (530)
T PRK15064 136 GELLLGVGIPEEQHYGL-MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISH 210 (530)
T ss_pred HHHHHhCCCChhHhcCc-hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeC
Confidence 8899999997644 344 589999999999999999999999999999999999999999999864 3689999999
Q ss_pred CCChHHHhcCCeEEEEeCCeE-EEecChhhHH
Q 007383 230 QPSFKILSTIDRILLLSKGSV-VHHGTLASLE 260 (605)
Q Consensus 230 ~~~~~i~~~~d~v~~l~~G~i-v~~g~~~~~~ 260 (605)
|++ .+.++||++++|++|++ ++.|++++..
T Consensus 211 d~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 211 DRH-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred CHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 998 48899999999999999 5889887653
No 305
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.9e-39 Score=358.80 Aligned_cols=215 Identities=22% Similarity=0.267 Sum_probs=177.5
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEE
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILL 99 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~ 99 (605)
..+|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ ++|+|.+
T Consensus 258 ~~~l~~~~l~~~~-----------------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~ 320 (490)
T PRK10938 258 EPRIVLNNGVVSY-----------------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTL 320 (490)
T ss_pred CceEEEeceEEEE-----------------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEE
Confidence 4579999999998 235699999999999999999999999999999999998876 7999999
Q ss_pred CCeeCCc----ccccCceEEEcCCCCCCC--CCCHHHHHHHHHh----cCCCChhHHHHHHHHHHHHcCCcc-ccccccc
Q 007383 100 NSSPIKP----SSFRKLSAYVPQHDACIP--SLTVYETFLFSAR----LLVPKTSQIDTIITVLLTELRLAH-LASTRLA 168 (605)
Q Consensus 100 ~g~~~~~----~~~~~~i~yv~Q~~~l~~--~lTv~e~l~~~~~----~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~ 168 (605)
+|+++.. ...++.+||++|++.++. ..|+++++.+... .......+.+++++++++.+++.+ ..++. +
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~ 399 (490)
T PRK10938 321 FGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAP-F 399 (490)
T ss_pred ecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCc-h
Confidence 9987532 124567999999876543 3577777654321 111112234567889999999987 66766 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHh-cCCeEEEEeC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILS-TIDRILLLSK 247 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~-~~d~v~~l~~ 247 (605)
.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++++.|||++|||++ ++.+ ++|++++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 9999999999999999999999999999999999999999999999998764457999999998 4666 5899999999
Q ss_pred CeEEEec
Q 007383 248 GSVVHHG 254 (605)
Q Consensus 248 G~iv~~g 254 (605)
|++++.-
T Consensus 479 G~i~~~~ 485 (490)
T PRK10938 479 GDIYRYV 485 (490)
T ss_pred CceEEee
Confidence 9987653
No 306
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-39 Score=310.65 Aligned_cols=168 Identities=41% Similarity=0.651 Sum_probs=149.6
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.+.. ....+++|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 1 l~~~~l~~~~~~---------------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~ 65 (171)
T cd03228 1 IEFKNVSFSYPG---------------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD 65 (171)
T ss_pred CEEEEEEEEcCC---------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE
Confidence 468899998831 11369999999999999999999999999999999999999999999999998
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
+.. ..+++.++|++|++.+++ .|+.||+ ||||||||++
T Consensus 66 ~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l--------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 66 LRDLDLESLRKNIAYVPQDPFLFS-GTIRENI--------------------------------------LSGGQRQRIA 106 (171)
T ss_pred hhhcCHHHHHhhEEEEcCCchhcc-chHHHHh--------------------------------------hCHHHHHHHH
Confidence 642 345677999999988776 5998886 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.. +|++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999999995 3 589999999998 4666 99999999885
No 307
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.3e-39 Score=305.93 Aligned_cols=158 Identities=32% Similarity=0.446 Sum_probs=144.1
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.|+ .+++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 1 l~~~~l~~~~~-----------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~ 63 (163)
T cd03216 1 LELRGITKRFG-----------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE 63 (163)
T ss_pred CEEEEEEEEEC-----------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 47899999983 3469999999999999999999999999999999999999999999999998
Q ss_pred CCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 104 IKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 104 ~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
+.. ...++.++|++| ||||||||+
T Consensus 64 ~~~~~~~~~~~~~i~~~~q----------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 64 VSFASPRDARRAGIAMVYQ----------------------------------------------------LSVGERQMV 91 (163)
T ss_pred CCcCCHHHHHhcCeEEEEe----------------------------------------------------cCHHHHHHH
Confidence 753 124567889888 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999754 789999999987 4788999999999999875
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.1e-39 Score=395.32 Aligned_cols=215 Identities=28% Similarity=0.435 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC----------
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP---------- 92 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~---------- 92 (605)
.|+++||+|+|+. .++++||+|+|+++++|+.+||+||||||||||+++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~--------------~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~ 1230 (1466)
T PTZ00265 1165 KIEIMDVNFRYIS--------------RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKN 1230 (1466)
T ss_pred eEEEEEEEEECCC--------------CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccc
Confidence 5999999999952 1235699999999999999999999999999999999999998
Q ss_pred --------------------------------------------CccEEEECCeeCC---cccccCceEEEcCCCCCCCC
Q 007383 93 --------------------------------------------TNGTILLNSSPIK---PSSFRKLSAYVPQHDACIPS 125 (605)
Q Consensus 93 --------------------------------------------~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~ 125 (605)
++|+|++||.++. ...+|+.+|||+|++.+|+
T Consensus 1231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~- 1309 (1466)
T PTZ00265 1231 EHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN- 1309 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-
Confidence 5999999999874 4678999999999999996
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-------cccccc---cCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 007383 126 LTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-------LASTRL---AHNLSGGERRRVSIGLSLLHDPAVLLLD 195 (605)
Q Consensus 126 lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~~---~~~LSgGerqRv~ia~aL~~~P~illLD 195 (605)
.|++|||.++.. . ..++.++++++..++.+ -.|+.+ ...||||||||++|||||+++|+|||||
T Consensus 1310 gTIreNI~~g~~---~---at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1310 MSIYENIKFGKE---D---ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred ccHHHHHhcCCC---C---CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999998731 1 12234555666555533 335554 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC----CeEE-EecChhhHH
Q 007383 196 EPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK----GSVV-HHGTLASLE 260 (605)
Q Consensus 196 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~----G~iv-~~g~~~~~~ 260 (605)
||||+||+.+.+.|.+.|.++++.+++|+|+++|+++ ..+.+|+|++|++ |+++ +.|+.+++.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999985334789999999996 4677999999999 9955 899998874
No 309
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4e-39 Score=320.36 Aligned_cols=197 Identities=25% Similarity=0.358 Sum_probs=160.6
Q ss_pred EEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 25 TGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 25 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
.+.|+++.++ +.+.+++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++
T Consensus 2 ~~~~~~~~~~----------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 65 (218)
T cd03290 2 QVTNGYFSWG----------------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNE 65 (218)
T ss_pred eeeeeEEecC----------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccc
Confidence 4678888773 235699999999999999999999999999999999999999999999999876
Q ss_pred Cc-------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-----------cccc
Q 007383 105 KP-------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-----------ASTR 166 (605)
Q Consensus 105 ~~-------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~ 166 (605)
.. ...++.++|++|++.++ ..|++||+.+.... . .+..+++++.+++.+. .++.
T Consensus 66 ~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 137 (218)
T cd03290 66 SEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF---N----KQRYKAVTDACSLQPDIDLLPFGDQTEIGER 137 (218)
T ss_pred ccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC---C----HHHHHHHHHHhCcHHHHHhCcCccccCcccC
Confidence 32 12346799999999877 57999999875321 1 1223445555565432 2334
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 167 LAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ--TLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 167 ~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~--~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
+..||||||||++||++|+.+|+++||||||+|||+.++..+++ +++.+++ .|.|||++||+++. + ..+|++++
T Consensus 138 -~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~-~-~~~d~i~~ 213 (218)
T cd03290 138 -GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQY-L-PHADWIIA 213 (218)
T ss_pred -CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-hhCCEEEE
Confidence 48999999999999999999999999999999999999999998 6676654 57899999999974 5 56999999
Q ss_pred EeCCe
Q 007383 245 LSKGS 249 (605)
Q Consensus 245 l~~G~ 249 (605)
|++|.
T Consensus 214 l~~G~ 218 (218)
T cd03290 214 MKDGS 218 (218)
T ss_pred ecCCC
Confidence 99874
No 310
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=307.52 Aligned_cols=229 Identities=26% Similarity=0.327 Sum_probs=201.6
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEE
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART--SPTNGTILL 99 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~--~~~~G~I~~ 99 (605)
.+|+++||.+++. +++.||++||+++++||+.+||||||||||||.++|+|.- .+++|+|.+
T Consensus 2 ~~L~I~dLhv~v~----------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~ 65 (251)
T COG0396 2 MMLEIKDLHVEVE----------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65 (251)
T ss_pred ceeEEeeeEEEec----------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEE
Confidence 4699999999983 2258999999999999999999999999999999999996 459999999
Q ss_pred CCeeCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCC--hhHHHHHHHHHHHHcCCcc-cccccccCCC
Q 007383 100 NSSPIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPK--TSQIDTIITVLLTELRLAH-LASTRLAHNL 171 (605)
Q Consensus 100 ~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~--~~~~~~~v~~~l~~l~L~~-~~~~~~~~~L 171 (605)
+|+++.. ...|..+..-+|.|.-+|..|+.+.|..+... .... ..+..+.+++.++.+++++ ..++.+--++
T Consensus 66 ~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GF 145 (251)
T COG0396 66 DGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGF 145 (251)
T ss_pred CCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCc
Confidence 9999852 34567788999999999999999999988765 2211 2356778899999999986 5666666799
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcC--CeEEEEeCCe
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTI--DRILLLSKGS 249 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~--d~v~~l~~G~ 249 (605)
|||||||..|+..++.+|++.+||||-||||..+-+.+.+.+++++.+ |.+++++||..+ +.++. |++.+|.+|+
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~r--ll~~i~pD~vhvl~~Gr 222 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQR--LLDYIKPDKVHVLYDGR 222 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHH--HHhhcCCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999864 899999999975 67776 9999999999
Q ss_pred EEEecChhhHHHHHHhCCCCC
Q 007383 250 VVHHGTLASLETFLLSSGFSV 270 (605)
Q Consensus 250 iv~~g~~~~~~~~~~~~g~~~ 270 (605)
|+..|.+ ++..++++.||.|
T Consensus 223 Iv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 223 IVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred EEecCCH-HHHHHHHHhchHH
Confidence 9999999 8889999999965
No 311
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=314.86 Aligned_cols=218 Identities=30% Similarity=0.413 Sum_probs=190.6
Q ss_pred CCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007383 19 LKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL 98 (605)
Q Consensus 19 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~ 98 (605)
.+...|+++|++..+ ++|.||+|+|++|++||-.+|+|||||||||||++++|..+|++|.+.
T Consensus 27 ~~~~li~l~~v~v~r-----------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~ 89 (257)
T COG1119 27 INEPLIELKNVSVRR-----------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89 (257)
T ss_pred CCcceEEecceEEEE-----------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCcee
Confidence 345679999999988 568899999999999999999999999999999999999999999999
Q ss_pred ECCeeCCc----ccccCceEEEcCC--CCCCCCCCHHHHHHHHHh--c--CC-CChhHHHHHHHHHHHHcCCcccccccc
Q 007383 99 LNSSPIKP----SSFRKLSAYVPQH--DACIPSLTVYETFLFSAR--L--LV-PKTSQIDTIITVLLTELRLAHLASTRL 167 (605)
Q Consensus 99 ~~g~~~~~----~~~~~~i~yv~Q~--~~l~~~lTv~e~l~~~~~--~--~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~ 167 (605)
+.|++... .++|++||+|.-. ..+.+..+|+|.+.-+.. . +. ...++..+++..+++.+|+.+.+++..
T Consensus 90 ~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~ 169 (257)
T COG1119 90 LLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF 169 (257)
T ss_pred eeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch
Confidence 99998742 4678999999753 345567788887764322 2 22 344567788999999999999999886
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISAS-RHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
..||-||||||-|||||+.+|++||||||++|||...++.+.+.|.+++.. .+.++|++||+.+ |+-..++++++++
T Consensus 170 -~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~ 247 (257)
T COG1119 170 -GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK 247 (257)
T ss_pred -hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEee
Confidence 999999999999999999999999999999999999999999999999753 3679999999998 6999999999999
Q ss_pred CCeEEEecC
Q 007383 247 KGSVVHHGT 255 (605)
Q Consensus 247 ~G~iv~~g~ 255 (605)
+|+++++|.
T Consensus 248 ~g~v~~~g~ 256 (257)
T COG1119 248 EGEVVAQGK 256 (257)
T ss_pred CCceeeccc
Confidence 999999874
No 312
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-39 Score=320.16 Aligned_cols=196 Identities=27% Similarity=0.360 Sum_probs=172.0
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++||++.|+.+.. + .+.....+++||||++++||+++|+|+||||||||-|+|.|+++|++|+|+++|
T Consensus 3 ~ll~v~~l~k~f~~~~~-----~---~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g 74 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG-----F---GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG 74 (268)
T ss_pred ceEEEeccEEEEecccc-----c---CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC
Confidence 46999999999964321 0 011135799999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
+++.... .++..+++.++|+.+|+....-.+.+++||||||||++|
T Consensus 75 ~~i~~~~----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I 120 (268)
T COG4608 75 KDITKLS----------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120 (268)
T ss_pred cchhhcc----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence 9864221 235677899999999997644344479999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||||+.+|+++++|||+|.||...+.+++++|+++.++.|.|.++++||.+. +..++||+.+|..|+||+.|+.+++.
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHHHHh
Confidence 9999999999999999999999999999999999999999999999999984 88899999999999999999998873
No 313
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.7e-39 Score=362.30 Aligned_cols=185 Identities=30% Similarity=0.443 Sum_probs=158.3
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++||+++|+ +++.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||
T Consensus 333 ~~I~~~~vsf~Y~----------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 333 PTLELRDLSFGYP----------------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred ceEEEEEEEEecC----------------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 3599999999994 223599999999999999999999999999999999999999999999999
Q ss_pred eeCC--cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 102 SPIK--PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 102 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
.+++ ...+|+.++||+|++.+|+. |++||+.++.. +..+++++++++..++++. .|+.+ ..
T Consensus 397 ~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 469 (529)
T TIGR02868 397 VSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP------DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGA 469 (529)
T ss_pred EEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC------CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccC
Confidence 8865 45678899999999999976 99999998621 1124456677777776543 24443 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQP 231 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 231 (605)
.||||||||++|||||+++|++|+||||||+||+.+.+.+.+.|+++. +++|+|+++|++
T Consensus 470 ~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 470 RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 699999999999999999999999999999999999999999999874 468999999985
No 314
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=356.55 Aligned_cols=214 Identities=24% Similarity=0.363 Sum_probs=179.9
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++|+++.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 249 ~~i~~~~l~~~~-------------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 309 (491)
T PRK10982 249 VILEVRNLTSLR-------------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309 (491)
T ss_pred cEEEEeCccccc-------------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC
Confidence 469999998842 2489999999999999999999999999999999999999999999999
Q ss_pred eeCCcc----cccCceEEEcCCC---CCCCCCCHHHHHHHH-----HhcCCC-ChhHHHHHHHHHHHHcCCc-ccccccc
Q 007383 102 SPIKPS----SFRKLSAYVPQHD---ACIPSLTVYETFLFS-----ARLLVP-KTSQIDTIITVLLTELRLA-HLASTRL 167 (605)
Q Consensus 102 ~~~~~~----~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~-----~~~~~~-~~~~~~~~v~~~l~~l~L~-~~~~~~~ 167 (605)
+++... ..++.++|++|+. .+++.+|+.+|..+. ....+. ...+.+++++++++.+++. +..++.
T Consensus 310 ~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 388 (491)
T PRK10982 310 KKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ- 388 (491)
T ss_pred EECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-
Confidence 887421 2356699999985 468888888773222 111111 2234456788899999995 455666
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++ ++.++||++++|++
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~-~~~~~~d~v~~l~~ 466 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMP-ELLGITDRILVMSN 466 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChH-HHHhhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999999765 889999999998 58899999999999
Q ss_pred CeEEEecChh
Q 007383 248 GSVVHHGTLA 257 (605)
Q Consensus 248 G~iv~~g~~~ 257 (605)
|+++..++.+
T Consensus 467 g~i~~~~~~~ 476 (491)
T PRK10982 467 GLVAGIVDTK 476 (491)
T ss_pred CEEEEEEccc
Confidence 9999877654
No 315
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=9e-39 Score=316.83 Aligned_cols=194 Identities=17% Similarity=0.235 Sum_probs=163.1
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-ECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL-LNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~-~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
++|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|. ++|.... +.|++.+++.+|++||+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP----------LGANSFILPGLTGEENA 70 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec----------cccccccCCcCcHHHHH
Confidence 379999999999999999999999999999999999999999997 7775431 23456788999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~ 212 (605)
.+.+..++.+.++. .+.+.+.+++....++.+ ++||||||||++||++|+.+|+++||||||+++|+.++..+.+.
T Consensus 71 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~ 146 (213)
T PRK15177 71 RMMASLYGLDGDEF---SHFCYQLTQLEQCYTDRV-SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAA 146 (213)
T ss_pred HHHHHHcCCCHHHH---HHHHHHHhChhHHhhchH-hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 98766543322222 223445677877777774 99999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHHHHH
Q 007383 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETFLL 264 (605)
Q Consensus 213 L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~~~~ 264 (605)
|.+..+ ++|+|++||+++ ++.+++|++++|++|++++.|+.++..+++.
T Consensus 147 l~~~~~--~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 147 LACQLQ--QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HHHHhh--CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 866543 358999999998 4788999999999999999999998876654
No 316
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-38 Score=359.12 Aligned_cols=207 Identities=31% Similarity=0.417 Sum_probs=177.5
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||+++|. +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.+++
T Consensus 5 ~~l~i~~l~~~y~----------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~ 68 (556)
T PRK11819 5 YIYTMNRVSKVVP----------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP 68 (556)
T ss_pred EEEEEeeEEEEeC----------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 4699999999982 146799999999999999999999999999999999999999999999975
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-C-------------CCCh----------------------hH
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-L-------------VPKT----------------------SQ 145 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~-------------~~~~----------------------~~ 145 (605)
. ..+|||+|++.+++.+||.||+.++... . .... .+
T Consensus 69 ~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (556)
T PRK11819 69 G--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD 140 (556)
T ss_pred C--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccc
Confidence 2 4599999999999999999999875310 0 1010 01
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 007383 146 IDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVI 225 (605)
Q Consensus 146 ~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii 225 (605)
.+++++++++.+|+.. .+++ +++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||
T Consensus 141 ~~~~~~~~l~~~gl~~-~~~~-~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~tvi 214 (556)
T PRK11819 141 LDSQLEIAMDALRCPP-WDAK-VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----GTVV 214 (556)
T ss_pred hHHHHHHHHHhCCCCc-ccCc-hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----CeEE
Confidence 2456788999999964 5666 49999999999999999999999999999999999999999999999872 4999
Q ss_pred EEeCCCChHHHhcCCeEEEEeCCeEE-EecChhhH
Q 007383 226 LSIHQPSFKILSTIDRILLLSKGSVV-HHGTLASL 259 (605)
Q Consensus 226 ~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~~~~~ 259 (605)
++|||++ .+.+.+|++++|++|+++ +.|+.++.
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 9999998 488899999999999986 88887764
No 317
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.1e-39 Score=359.24 Aligned_cols=202 Identities=23% Similarity=0.350 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|++++|+ +++.+|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|.+||+
T Consensus 322 ~i~~~~v~f~y~----------------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 322 TLELRNVTFAYQ----------------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred eEEEEEEEEEeC----------------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 599999999994 2346999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccccc---c-cCCCCHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR---L-AHNLSGGE 175 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~---~-~~~LSgGe 175 (605)
++.. ..+++.++||+|++.+++. |++|| . . ...++.+++.++.+++....+.. . ..+|||||
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq 454 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K--PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQ 454 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHH-hhccc---c-----C--chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHH
Confidence 8753 4678899999999988864 88877 1 1 12345677888888887543211 1 25899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
|||++||||++++|++|+|||||++||+.+++.+.+.|.+..++.++|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 455 ~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999998765445789999999985 5678999999999999866
No 318
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-38 Score=321.95 Aligned_cols=190 Identities=24% Similarity=0.354 Sum_probs=160.3
Q ss_pred eeeeeeEEEe-----CCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHH
Q 007383 55 ILKNVSLTAY-----PSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVY 129 (605)
Q Consensus 55 iL~~vs~~i~-----~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (605)
.++|++++++ +||+++|+||||||||||+++|+|+++|++|+|.++|+ .++|++|+....+.+||+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---------eEEEecccccCCCCCCHH
Confidence 5666776665 79999999999999999999999999999999999984 489999998777789999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 007383 130 ETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNV 209 (605)
Q Consensus 130 e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i 209 (605)
|++.+....... .....+++++.+++.+..++.+ ++|||||||||+||++|+.+|++++|||||++||+.++..+
T Consensus 80 e~l~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~-~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l 154 (246)
T cd03237 80 DLLSSITKDFYT----HPYFKTEIAKPLQIEQILDREV-PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA 154 (246)
T ss_pred HHHHHHhhhccc----cHHHHHHHHHHcCCHHHhhCCh-hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 999765332111 1234678899999988777774 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE--EecChhhH
Q 007383 210 MQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV--HHGTLASL 259 (605)
Q Consensus 210 ~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv--~~g~~~~~ 259 (605)
.+.|++++++.++|||++|||++ .+..++|++++|+++..+ ..+++.++
T Consensus 155 ~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 155 SKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 99999998766899999999997 478899999999764333 33444443
No 319
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.4e-38 Score=303.23 Aligned_cols=163 Identities=33% Similarity=0.428 Sum_probs=145.6
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
|+++|+++.|+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 i~~~~~~~~~~----------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~- 63 (166)
T cd03223 1 IELENLSLATP----------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG- 63 (166)
T ss_pred CEEEEEEEEcC----------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-
Confidence 46899999883 1256999999999999999999999999999999999999999999999873
Q ss_pred CCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHH
Q 007383 104 IKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGL 183 (605)
Q Consensus 104 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~ 183 (605)
+.++|++|++.++ ..|++||+.+. . +.+||||||||++|||
T Consensus 64 -------~~i~~~~q~~~~~-~~tv~~nl~~~------------------------------~-~~~LS~G~~~rv~lar 104 (166)
T cd03223 64 -------EDLLFLPQRPYLP-LGTLREQLIYP------------------------------W-DDVLSGGEQQRLAFAR 104 (166)
T ss_pred -------ceEEEECCCCccc-cccHHHHhhcc------------------------------C-CCCCCHHHHHHHHHHH
Confidence 5699999998765 57999998642 2 3789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 184 SLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 184 aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ..+.+|++++|++|
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 999999999999999999999999999999976 479999999986 35799999999874
No 320
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.6e-39 Score=392.80 Aligned_cols=211 Identities=23% Similarity=0.332 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|+. +.+.+|+|+|+++++||.+||+|+||||||||+++|.|+++|++|+|.+||.
T Consensus 1234 ~I~f~nVsf~Y~~---------------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~ 1298 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---------------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC 1298 (1495)
T ss_pred cEEEEEEEEEECC---------------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCE
Confidence 5999999999941 2356999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. ...+|++++||||++.+|+. |++|||.+... ..++.+.++++..++.+. .|+.+ ..
T Consensus 1299 di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~-------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~ 1370 (1495)
T PLN03232 1299 DVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSE-------HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE 1370 (1495)
T ss_pred EhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCCC-------CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCC
Confidence 974 45788999999999999976 99999975421 123445666666666432 23333 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|++.. +++|||+++|+++. + ..+|+|++|++|+
T Consensus 1371 ~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~t-i-~~~DrIlVL~~G~ 1446 (1495)
T PLN03232 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNT-I-IDCDKILVLSSGQ 1446 (1495)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH-H-HhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999874 37899999999973 4 5599999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
+++.|+++++.
T Consensus 1447 ivE~Gt~~eLl 1457 (1495)
T PLN03232 1447 VLEYDSPQELL 1457 (1495)
T ss_pred EEEECCHHHHH
Confidence 99999999875
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=355.38 Aligned_cols=204 Identities=25% Similarity=0.339 Sum_probs=176.7
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...|+++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++
T Consensus 317 ~~~l~~~~l~~~~~-----------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~ 379 (530)
T PRK15064 317 RNALEVENLTKGFD-----------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS 379 (530)
T ss_pred CceEEEEeeEEeeC-----------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 35799999999982 3569999999999999999999999999999999999999999999998
Q ss_pred CeeCCcccccCceEEEcCCCC--CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHH
Q 007383 101 SSPIKPSSFRKLSAYVPQHDA--CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERR 177 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerq 177 (605)
|+ +.+||++|++. +++.+||.|++.+... . ...+++++++++.+|+. +..++. +.+|||||||
T Consensus 380 ~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~--~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGq~q 445 (530)
T PRK15064 380 EN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E--GDDEQAVRGTLGRLLFSQDDIKKS-VKVLSGGEKG 445 (530)
T ss_pred Cc--------eEEEEEcccccccCCCCCcHHHHHHHhcc---C--CccHHHHHHHHHHcCCChhHhcCc-ccccCHHHHH
Confidence 73 45999999864 5667999999864211 1 12245678899999994 566777 4999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE-EecCh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV-HHGTL 256 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~~ 256 (605)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||++ .+.++||++++|++|+++ +.|++
T Consensus 446 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~ 520 (530)
T PRK15064 446 RMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTY 520 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCH
Confidence 999999999999999999999999999999999999986 249999999998 588899999999999998 88887
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
+++.
T Consensus 521 ~~~~ 524 (530)
T PRK15064 521 EEYL 524 (530)
T ss_pred HHHH
Confidence 7653
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.5e-38 Score=323.97 Aligned_cols=199 Identities=25% Similarity=0.409 Sum_probs=163.5
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 36 ~~~~l~i~nls~~-------------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i 96 (282)
T cd03291 36 DDNNLFFSNLCLV-------------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH 96 (282)
T ss_pred CCCeEEEEEEEEe-------------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4456999999983 135999999999999999999999999999999999999999999999
Q ss_pred CCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-----------ccccc
Q 007383 100 NSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-----------STRLA 168 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~ 168 (605)
+| .++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+.. +.. +
T Consensus 97 ~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~---~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~-~ 157 (282)
T cd03291 97 SG----------RISFSSQFSWIMPG-TIKENIIFGVSY---DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEG-G 157 (282)
T ss_pred CC----------EEEEEeCccccccc-CHHHHhhccccc---CH----HHHHHHHHHhCCHHHHHhccccccceecCC-C
Confidence 88 28999999988875 999999875321 11 1222334444443211 122 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTL-KSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+ ++++ + +.|||++||+++. + ..+|++++|++
T Consensus 158 ~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~-~-~~~d~i~~l~~ 233 (282)
T cd03291 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEH-L-KKADKILILHE 233 (282)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHH-H-HhCCEEEEEEC
Confidence 689999999999999999999999999999999999999999865 5664 3 6899999999974 4 67999999999
Q ss_pred CeEEEecChhhHH
Q 007383 248 GSVVHHGTLASLE 260 (605)
Q Consensus 248 G~iv~~g~~~~~~ 260 (605)
|++++.|+++++.
T Consensus 234 G~i~~~g~~~~~~ 246 (282)
T cd03291 234 GSSYFYGTFSELQ 246 (282)
T ss_pred CEEEEECCHHHHH
Confidence 9999999988764
No 323
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.7e-39 Score=358.21 Aligned_cols=197 Identities=35% Similarity=0.517 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||+++|+. .++.+|+|+|+++++||.++|+||||||||||+|+|+|+++|++|+|.+||+
T Consensus 320 ~i~~~~v~f~y~~---------------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~ 384 (529)
T TIGR02857 320 SLEFSGLSVAYPG---------------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGV 384 (529)
T ss_pred eEEEEEEEEECCC---------------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 5999999999941 2346999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~~ 169 (605)
++. .+.+|+.++||+|++.+++ .|++||+.++... ..++.+.++++..++.+.. |+.+ ..
T Consensus 385 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~ 457 (529)
T TIGR02857 385 PLADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARPD------ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGA 457 (529)
T ss_pred ehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhccccc
Confidence 874 3567889999999999987 5999999876311 1234556667776665432 3333 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
.||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|
T Consensus 458 ~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 799999999999999999999999999999999999999999999985 4789999999986 35789999875
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.1e-38 Score=356.51 Aligned_cols=207 Identities=31% Similarity=0.426 Sum_probs=175.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+++++||+++|. +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.+++
T Consensus 3 ~~i~~~nls~~~~----------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~ 66 (552)
T TIGR03719 3 YIYTMNRVSKVVP----------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP 66 (552)
T ss_pred EEEEEeeEEEecC----------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 4699999999982 135799999999999999999999999999999999999999999999975
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc--------------CCCChhH----------------------
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL--------------LVPKTSQ---------------------- 145 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~--------------~~~~~~~---------------------- 145 (605)
+..+|||+|++.+++.+||+||+.++... ......+
T Consensus 67 --------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (552)
T TIGR03719 67 --------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWD 138 (552)
T ss_pred --------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcch
Confidence 24699999999999999999999875321 0001111
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 007383 146 IDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVI 225 (605)
Q Consensus 146 ~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii 225 (605)
.+++++++++.+|+.. .++. +++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 139 ~~~~~~~~l~~~~l~~-~~~~-~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvI 212 (552)
T TIGR03719 139 LDRKLEIAMDALRCPP-WDAD-VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVV 212 (552)
T ss_pred hHHHHHHHHhhCCCCc-ccCc-hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEE
Confidence 1245677888888854 4566 4999999999999999999999999999999999999999999999876 24999
Q ss_pred EEeCCCChHHHhcCCeEEEEeCCeEE-EecChhhH
Q 007383 226 LSIHQPSFKILSTIDRILLLSKGSVV-HHGTLASL 259 (605)
Q Consensus 226 ~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~~~~~ 259 (605)
++|||++ .+.+++|++++|++|+++ +.|+.++.
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 9999998 488899999999999975 78988764
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-38 Score=391.46 Aligned_cols=211 Identities=26% Similarity=0.344 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|+. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.
T Consensus 1237 ~I~f~nVsf~Y~~---------------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~ 1301 (1622)
T PLN03130 1237 SIKFEDVVLRYRP---------------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGC 1301 (1622)
T ss_pred cEEEEEEEEEeCC---------------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCE
Confidence 5999999999941 2346999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. ...+|+++++||||+.+|+. |++|||.++.. ..++.+.++++..++.+. .|+.+ ..
T Consensus 1302 dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~-------~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~ 1373 (1622)
T PLN03130 1302 DISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE-------HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE 1373 (1622)
T ss_pred ecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC-------CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC
Confidence 975 35788999999999999976 99999975421 123445666666665432 33443 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++. + ..+|||++|++|+
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~t-I-~~~DrIlVLd~G~ 1449 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT-I-IDCDRILVLDAGR 1449 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHH-H-HhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999975 37899999999974 4 5599999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
+++.|+++++.
T Consensus 1450 IvE~Gt~~eLl 1460 (1622)
T PLN03130 1450 VVEFDTPENLL 1460 (1622)
T ss_pred EEEeCCHHHHH
Confidence 99999999985
No 326
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-38 Score=366.34 Aligned_cols=218 Identities=31% Similarity=0.443 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||++.||. .+..+||+|+|+++++|+.+||+|||||||||.+.+|-..++|++|+|.+||+
T Consensus 987 ~I~~~~V~F~YPs--------------RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~ 1052 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT--------------RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV 1052 (1228)
T ss_pred EEEEeeeEeeCCC--------------CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc
Confidence 4999999999963 24678999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHH-HH--HcCCcccccccc---cCCCCH
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVL-LT--ELRLAHLASTRL---AHNLSG 173 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~-l~--~l~L~~~~~~~~---~~~LSg 173 (605)
+++ .+.+|+++|.|.|+|.||.. |++||+.|+.. . .+.+|..+..+.. +. ..+|.+-.||.+ ..+|||
T Consensus 1053 dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1053 DIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred ccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC-C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 875 45688999999999999975 99999999821 1 2333322221111 00 135566677776 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
|||||++||||+++||+||||||.||+||+++.+.+-+.|.+.. .|+|.|++.|.++ ..+.+|.|.++++|++++.
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999985 4799999999998 4688999999999999999
Q ss_pred cChhhHHH
Q 007383 254 GTLASLET 261 (605)
Q Consensus 254 g~~~~~~~ 261 (605)
|+.+++..
T Consensus 1206 GtH~~L~~ 1213 (1228)
T KOG0055|consen 1206 GTHDELLA 1213 (1228)
T ss_pred ccHHHHHh
Confidence 99999865
No 327
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.3e-38 Score=354.14 Aligned_cols=207 Identities=20% Similarity=0.272 Sum_probs=172.5
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++||+++|+.+ +...+.+|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|.+||
T Consensus 336 ~~i~~~~v~f~y~~~------------~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g 403 (555)
T TIGR01194 336 DSIELKDVHMNPKAP------------EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG 403 (555)
T ss_pred ceEEEEEEEEEeCCC------------CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 469999999999521 00124699999999999999999999999999999999999999999999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccc-----cCCCCH
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL-----AHNLSG 173 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~~LSg 173 (605)
.++.. ..+++.++||+|++.+++. |++||.. .+..+++++++++.+++.+..+... ...|||
T Consensus 404 ~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 404 AAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred EECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 98753 4577889999999988865 8888841 1123456778899999876543221 257999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLK-SISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~-~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
|||||++|||||+++|++++|||||++||+.+...+.+.+. .++ ..++|+|+++|+++ ..+.+|+|++|++|+++.
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGKTIIIISHDDQ--YFELADQIIKLAAGCIVK 550 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccHH--HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998664 453 34789999999986 467899999999999975
Q ss_pred e
Q 007383 253 H 253 (605)
Q Consensus 253 ~ 253 (605)
.
T Consensus 551 ~ 551 (555)
T TIGR01194 551 D 551 (555)
T ss_pred e
Confidence 4
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-37 Score=349.09 Aligned_cols=206 Identities=25% Similarity=0.358 Sum_probs=174.9
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
..+|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 322 ~~~l~~~~l~~~~-----------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~ 384 (556)
T PRK11819 322 DKVIEAENLSKSF-----------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG 384 (556)
T ss_pred CeEEEEEeEEEEE-----------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 4579999999998 34579999999999999999999999999999999999999999999995
Q ss_pred CeeCCcccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHHH
Q 007383 101 SSPIKPSSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERRR 178 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqR 178 (605)
+. ..+||++|++ .+++.+||+||+.+......... .+...+++++.+++.+ ..++. +.+||||||||
T Consensus 385 ~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~-~~~LSgG~~qr 453 (556)
T PRK11819 385 ET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKK-VGVLSGGERNR 453 (556)
T ss_pred Cc--------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCc-hhhCCHHHHHH
Confidence 42 1489999996 68888999999998753322111 1223557899999964 45666 49999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC-CeEE-EecCh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK-GSVV-HHGTL 256 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~-G~iv-~~g~~ 256 (605)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++. + |||++|||++ .+.++||++++|++ |++. +.|+.
T Consensus 454 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence 999999999999999999999999999999999999872 4 8999999998 58899999999986 7876 57776
Q ss_pred hhH
Q 007383 257 ASL 259 (605)
Q Consensus 257 ~~~ 259 (605)
++.
T Consensus 529 ~~~ 531 (556)
T PRK11819 529 QEY 531 (556)
T ss_pred HHH
Confidence 654
No 329
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.1e-37 Score=350.72 Aligned_cols=200 Identities=25% Similarity=0.329 Sum_probs=175.4
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...++++|+++.|. .. .|+++|+++++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 338 ~~~l~~~~ls~~~~-----------------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 399 (590)
T PRK13409 338 ETLVEYPDLTKKLG-----------------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE 399 (590)
T ss_pred ceEEEEcceEEEEC-----------------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe
Confidence 45799999999882 22 4999999999999999999999999999999999999999999986
Q ss_pred CeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 101 SSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
..++|++|+..+.+.+||+|++.+...... ....++++++.+++.+..++.+ .+|||||||||+
T Consensus 400 ----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~-~~LSGGe~QRva 463 (590)
T PRK13409 400 ----------LKISYKPQYIKPDYDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNV-KDLSGGELQRVA 463 (590)
T ss_pred ----------eeEEEecccccCCCCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCc-ccCCHHHHHHHH
Confidence 148999999888889999999987532221 1235688999999998788774 999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
||++|+.+|++|||||||+|||+.++..+.++|++++++.|+|||++|||+. .+..++||+++|+ |++...|..
T Consensus 464 iAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999999999999999999998766899999999998 4888999999996 577776663
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.4e-38 Score=382.92 Aligned_cols=209 Identities=27% Similarity=0.430 Sum_probs=173.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC-C
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN-S 101 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~-g 101 (605)
.|+++||+++|+. ...+.+|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.++ |
T Consensus 382 ~I~~~nVsf~Y~~--------------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g 447 (1466)
T PTZ00265 382 KIQFKNVRFHYDT--------------RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447 (1466)
T ss_pred cEEEEEEEEEcCC--------------CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCC
Confidence 6999999999941 123569999999999999999999999999999999999999999999995 6
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC----------CC---------------------------
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL----------VP--------------------------- 141 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~----------~~--------------------------- 141 (605)
.++. ...+|+.+|||+|++.+|+. |++||+.++.... ..
T Consensus 448 ~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (1466)
T PTZ00265 448 HNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMS 526 (1466)
T ss_pred cchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcc
Confidence 7663 34577889999999999975 9999999864110 00
Q ss_pred --------------ChhHHHHHHHHHHHHcCCcccc-------cccc---cCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 007383 142 --------------KTSQIDTIITVLLTELRLAHLA-------STRL---AHNLSGGERRRVSIGLSLLHDPAVLLLDEP 197 (605)
Q Consensus 142 --------------~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~~~LSgGerqRv~ia~aL~~~P~illLDEP 197 (605)
.....++.+.++++.+++.+.. ++.+ +..||||||||++|||||+++|+|||||||
T Consensus 527 ~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEp 606 (1466)
T PTZ00265 527 NTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEA 606 (1466)
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0011235677788888776442 2222 478999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 198 TSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 198 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
|++||+.++..+.+.|++++++.|+|+|+++|+++. + +.+|+|++|++|
T Consensus 607 TSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 999999999999999999976458999999999973 4 789999999986
No 331
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=330.19 Aligned_cols=223 Identities=30% Similarity=0.478 Sum_probs=186.9
Q ss_pred CCCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007383 18 PLKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97 (605)
Q Consensus 18 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I 97 (605)
|.+.-.|.++++++.-+ ..++++|+|+||++.+||.+||+||||||||||.|+|.|..+|.+|.|
T Consensus 329 P~P~g~L~Ve~l~~~PP---------------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V 393 (580)
T COG4618 329 PAPQGALSVERLTAAPP---------------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393 (580)
T ss_pred CCCCceeeEeeeeecCC---------------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE
Confidence 33445699999998432 245789999999999999999999999999999999999999999999
Q ss_pred EECCeeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHH-----HHHHHHHHHHcCCcccccccc-
Q 007383 98 LLNSSPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQI-----DTIITVLLTELRLAHLASTRL- 167 (605)
Q Consensus 98 ~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~-----~~~v~~~l~~l~L~~~~~~~~- 167 (605)
.+||.+++ ++++-++|||+||+-.+|+. ||.||+. +.-+. +.++. ...+.+++ +.+.+-.|+.+
T Consensus 394 RLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa---Rf~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG 467 (580)
T COG4618 394 RLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA---RFGEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIG 467 (580)
T ss_pred EecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH---hccccCCHHHHHHHHHHcChHHHH--HhCcCCccCccC
Confidence 99999874 45677899999999999986 9999996 33211 11111 11233333 34455567776
Q ss_pred --cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 168 --AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 168 --~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
...||||||||+++||||..+|.+++||||-|+||......+.+.|.+.++ +|.|+|+++|.|+ +...+|+|++|
T Consensus 468 ~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRPs--~L~~~Dkilvl 544 (580)
T COG4618 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRPS--ALASVDKILVL 544 (580)
T ss_pred CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCHH--HHhhcceeeee
Confidence 468999999999999999999999999999999999999999999999976 4889999999997 68999999999
Q ss_pred eCCeEEEecChhhHHHHHH
Q 007383 246 SKGSVVHHGTLASLETFLL 264 (605)
Q Consensus 246 ~~G~iv~~g~~~~~~~~~~ 264 (605)
++|++..+|+.+|+...+.
T Consensus 545 ~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 545 QDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred cCChHHhcCCHHHHHHHhc
Confidence 9999999999999877654
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-38 Score=321.23 Aligned_cols=225 Identities=24% Similarity=0.324 Sum_probs=198.6
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-----Ccc
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-----TNG 95 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-----~~G 95 (605)
...|+++|||+.+. ...+...++++|||++++||.+||+|+||||||-..+.+.|+++. -+|
T Consensus 4 ~~lL~v~nLsV~f~-------------~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg 70 (534)
T COG4172 4 MPLLSIRNLSVAFH-------------QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG 70 (534)
T ss_pred CcceeeeccEEEEe-------------cCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccc
Confidence 34699999999985 234678899999999999999999999999999999999999975 579
Q ss_pred EEEECCeeCC---cccc---c-CceEEEcCCCC--CCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcccc--
Q 007383 96 TILLNSSPIK---PSSF---R-KLSAYVPQHDA--CIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLA-- 163 (605)
Q Consensus 96 ~I~~~g~~~~---~~~~---~-~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~-- 163 (605)
+|.++|+++- +..+ | .+|+++||+|. +.|-.|+.+.+.-..++ .+.++++.++++.++++.+|+.+-.
T Consensus 71 ~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r 150 (534)
T COG4172 71 SILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR 150 (534)
T ss_pred eeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhh
Confidence 9999999862 2333 3 36999999984 88888999999888887 4557788899999999999996533
Q ss_pred cccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE
Q 007383 164 STRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 164 ~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~ 243 (605)
-+.+|++|||||||||.||.||+++|++||.||||++||...+.+|+++|+++.++.|.+++++|||++. +.+++|||.
T Consensus 151 l~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~ 229 (534)
T COG4172 151 LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVY 229 (534)
T ss_pred hhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEE
Confidence 2233799999999999999999999999999999999999999999999999999999999999999985 889999999
Q ss_pred EEeCCeEEEecChhhH
Q 007383 244 LLSKGSVVHHGTLASL 259 (605)
Q Consensus 244 ~l~~G~iv~~g~~~~~ 259 (605)
+|.+|++++.|+.+++
T Consensus 230 VM~~G~ivE~~~t~~l 245 (534)
T COG4172 230 VMQHGEIVETGTTETL 245 (534)
T ss_pred EEeccEEeecCcHHHH
Confidence 9999999999998876
No 333
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.4e-38 Score=385.10 Aligned_cols=212 Identities=22% Similarity=0.281 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|+. +...+|+|+|+++++||.+||+|+||||||||+++|.|+++|++|+|.+||.
T Consensus 1284 ~I~f~nVsf~Y~~---------------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE---------------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL 1348 (1522)
T ss_pred cEEEEEEEEEeCC---------------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE
Confidence 5999999999941 2246999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. ...+|+++++||||+.+|+. |++|||..... .+ ++.+.++++..++.+. .|+.+ ..
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~---~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~ 1420 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQ---YS----DEEVWWALELAHLKTFVSALPDKLDHECAEGGE 1420 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcccC---CC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCCC
Confidence 975 35788999999999999986 99999963211 12 3345666676666432 34443 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++. ...+|||++|++|+
T Consensus 1421 ~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~t--i~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNT--IMDYTRVIVLDKGE 1496 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--HHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999874 36899999999973 55699999999999
Q ss_pred EEEecChhhHHH
Q 007383 250 VVHHGTLASLET 261 (605)
Q Consensus 250 iv~~g~~~~~~~ 261 (605)
+++.|+++++.+
T Consensus 1497 IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1497 VAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEECCHHHHHh
Confidence 999999998853
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.8e-37 Score=346.24 Aligned_cols=206 Identities=25% Similarity=0.353 Sum_probs=173.9
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
..+|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++
T Consensus 320 ~~~l~~~~l~~~~-----------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~ 382 (552)
T TIGR03719 320 DKVIEAENLSKGF-----------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG 382 (552)
T ss_pred CeEEEEeeEEEEE-----------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC
Confidence 3479999999998 23579999999999999999999999999999999999999999999995
Q ss_pred CeeCCcccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHHH
Q 007383 101 SSPIKPSSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERRR 178 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqR 178 (605)
+. ..+||++|++ .+++.+||.|++.+......... .+.+.+++++.+|+.+ ..++. +.+||||||||
T Consensus 383 ~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGe~qr 451 (552)
T TIGR03719 383 ET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKK-VGQLSGGERNR 451 (552)
T ss_pred Cc--------eEEEEEeCCccccCCCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCc-hhhCCHHHHHH
Confidence 42 1589999986 47888999999998753222111 1234567899999964 45666 49999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC-CeEE-EecCh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK-GSVV-HHGTL 256 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~-G~iv-~~g~~ 256 (605)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++. + |||++|||++ .+.++||++++|++ |+++ +.|+.
T Consensus 452 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence 999999999999999999999999999999999999872 4 8999999998 48889999999986 5776 66766
Q ss_pred hhH
Q 007383 257 ASL 259 (605)
Q Consensus 257 ~~~ 259 (605)
++.
T Consensus 527 ~~~ 529 (552)
T TIGR03719 527 SEY 529 (552)
T ss_pred HHH
Confidence 543
No 335
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.5e-37 Score=381.65 Aligned_cols=211 Identities=24% Similarity=0.307 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.
T Consensus 1308 ~I~f~nVsf~Y~~---------------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~ 1372 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE---------------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGR 1372 (1560)
T ss_pred eEEEEEEEEEeCC---------------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 5999999999941 2345999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. .+.+|+.+|||||++.+|+. |++|||.... +..++.+.++++..++.+. .|+.+ ..
T Consensus 1373 di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~-------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~ 1444 (1560)
T PTZ00243 1373 EIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL-------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGS 1444 (1560)
T ss_pred EcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc-------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcC
Confidence 975 35788999999999999976 9999996421 1123557777887777543 24443 35
Q ss_pred CCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 170 NLSGGERRRVSIGLSLLHD-PAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~-P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
+||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. .++|||+++|+++ ....||+|++|++|
T Consensus 1445 nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1445 NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLH--TVAQYDKIIVMDHG 1520 (1560)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHH--HHHhCCEEEEEECC
Confidence 7999999999999999995 89999999999999999999999999864 3689999999996 45779999999999
Q ss_pred eEEEecChhhHH
Q 007383 249 SVVHHGTLASLE 260 (605)
Q Consensus 249 ~iv~~g~~~~~~ 260 (605)
++++.|+++++.
T Consensus 1521 ~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1521 AVAEMGSPRELV 1532 (1560)
T ss_pred EEEEECCHHHHH
Confidence 999999999985
No 336
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-38 Score=329.23 Aligned_cols=227 Identities=30% Similarity=0.482 Sum_probs=188.0
Q ss_pred CCCCCCCCCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 12 PSPPPPPLKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 12 ~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
|.++|-..++-.++++||++.|+ .+|++|+||||++.||+.+||+|||||||||++++|....+
T Consensus 526 P~a~pl~~~~G~i~fsnvtF~Y~----------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd 589 (790)
T KOG0056|consen 526 PGAPPLKVTQGKIEFSNVTFAYD----------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD 589 (790)
T ss_pred CCCCCccccCCeEEEEEeEEecC----------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh
Confidence 33444334455699999999995 56889999999999999999999999999999999999999
Q ss_pred CCccEEEECCeeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHH--HH-HHHcCCcccccc
Q 007383 92 PTNGTILLNSSPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIIT--VL-LTELRLAHLAST 165 (605)
Q Consensus 92 ~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~--~~-l~~l~L~~~~~~ 165 (605)
..+|.|.+||+++. ...+|+.||.||||..+|++ |+..|++|+. . ..++++..+..+ ++ =+.++..+..++
T Consensus 590 v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak-~-~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 590 VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK-P-SASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC-C-CCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 99999999999985 35789999999999999875 9999998873 1 113333322221 11 123555555666
Q ss_pred cc---cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeE
Q 007383 166 RL---AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRI 242 (605)
Q Consensus 166 ~~---~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v 242 (605)
++ .-.|||||||||+|||+++++|.+++|||.||+||..+.++|...|.++++ ++|-|++.|..+. .-.+|.|
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLST--ivnAD~I 742 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLST--IVNADLI 742 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehh--eecccEE
Confidence 65 336999999999999999999999999999999999999999999999985 6899999999984 4569999
Q ss_pred EEEeCCeEEEecChhhHHH
Q 007383 243 LLLSKGSVVHHGTLASLET 261 (605)
Q Consensus 243 ~~l~~G~iv~~g~~~~~~~ 261 (605)
+++++|+|++.|..+|+..
T Consensus 743 Lvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 743 LVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEeCCeEeecCcHHHHHh
Confidence 9999999999999998753
No 337
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.7e-37 Score=297.61 Aligned_cols=233 Identities=20% Similarity=0.273 Sum_probs=200.9
Q ss_pred ceEEEEeEEEEEecCCCCc----cc---cccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 007383 22 YKLTGSSISYIKSNNSIIP----SF---IFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTN 94 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~----~~---~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~ 94 (605)
..++++||++.++...... .+ ......+.....+|+||||++++||.+||+|+||||||||||+|+|.++|++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 4689999999997654211 11 1111124456789999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHH
Q 007383 95 GTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174 (605)
Q Consensus 95 G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG 174 (605)
|+|.++|+-...-.+ .-.+.|.+|.+||+.+-..+++.++++.+++++++++.-+|.+..|.++ +.+|.|
T Consensus 82 G~v~v~G~v~~li~l---------g~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pv-ktYSSG 151 (249)
T COG1134 82 GKVKVTGKVAPLIEL---------GAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV-KTYSSG 151 (249)
T ss_pred ceEEEcceEehhhhc---------ccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCch-hhccHH
Confidence 999999975321111 1235678999999999988888889999999999999999999999996 999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
|+-|+++|.+...+|+|||+||-.+--|+.=++...+.++++.++ ++|||++|||++ .+.++||++++|++|++...|
T Consensus 152 M~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 152 MYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred HHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcC
Confidence 999999999999999999999999999999999999999999765 689999999998 499999999999999999999
Q ss_pred ChhhHHHHHHhC
Q 007383 255 TLASLETFLLSS 266 (605)
Q Consensus 255 ~~~~~~~~~~~~ 266 (605)
+++++.+++.+.
T Consensus 230 ~~~~vi~~Y~~~ 241 (249)
T COG1134 230 SPEEVIPAYEED 241 (249)
T ss_pred CHHHHHHHHHHh
Confidence 999998776543
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-37 Score=348.37 Aligned_cols=204 Identities=25% Similarity=0.373 Sum_probs=174.3
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....|+++||++.| +.+.+|+|+|++|++||++||+||||||||||||+|+|+.+|++|+|.+
T Consensus 309 ~~~~l~~~~l~~~y-----------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 371 (638)
T PRK10636 309 PNPLLKMEKVSAGY-----------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371 (638)
T ss_pred CCceEEEEeeEEEe-----------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 34579999999998 3467999999999999999999999999999999999999999999999
Q ss_pred CCeeCCcccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHH
Q 007383 100 NSSPIKPSSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGER 176 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGer 176 (605)
++. ..+||++|+. .+.+..|+.+++.- .. ....++++.++++.+++.. ..+++ ++.||||||
T Consensus 372 ~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~L~~~~l~~~~~~~~-~~~LSgGek 436 (638)
T PRK10636 372 AKG--------IKLGYFAQHQLEFLRADESPLQHLAR---LA---PQELEQKLRDYLGGFGFQGDKVTEE-TRRFSGGEK 436 (638)
T ss_pred CCC--------EEEEEecCcchhhCCccchHHHHHHH---hC---chhhHHHHHHHHHHcCCChhHhcCc-hhhCCHHHH
Confidence 742 2589999974 35566788887642 11 1223466889999999963 56666 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE-EecC
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV-HHGT 255 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~ 255 (605)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+
T Consensus 437 qRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~ 511 (638)
T PRK10636 437 ARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGD 511 (638)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCC
Confidence 9999999999999999999999999999999999999987 25 9999999997 488899999999999997 8888
Q ss_pred hhhHH
Q 007383 256 LASLE 260 (605)
Q Consensus 256 ~~~~~ 260 (605)
.++..
T Consensus 512 ~~~~~ 516 (638)
T PRK10636 512 LEDYQ 516 (638)
T ss_pred HHHHH
Confidence 87753
No 339
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-37 Score=314.22 Aligned_cols=191 Identities=26% Similarity=0.382 Sum_probs=161.4
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-----------ECCeeCCc--cc-cc--CceEEE
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL-----------LNSSPIKP--SS-FR--KLSAYV 116 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~-----------~~g~~~~~--~~-~~--~~i~yv 116 (605)
+.+|+|+| .+++||+++|+||||||||||||+|+|+++|++|+|. ++|+++.. .. .+ ..++|+
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 35999999 5999999999999999999999999999999999996 78877632 11 11 247899
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 007383 117 PQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDE 196 (605)
Q Consensus 117 ~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDE 196 (605)
+|+..+++. ++.+++..... ..+.++.+.++++.+|+.+..++.+ ..||||||||++||++|+.+|++++|||
T Consensus 93 ~~~~~~~~~-~~~~~i~~~l~-----~~~~~~~~~~~l~~~gl~~~~~~~~-~~LS~G~~qrv~laral~~~p~illlDE 165 (255)
T cd03236 93 PQYVDLIPK-AVKGKVGELLK-----KKDERGKLDELVDQLELRHVLDRNI-DQLSGGELQRVAIAAALARDADFYFFDE 165 (255)
T ss_pred cchhccCch-HHHHHHHHHhc-----hhHHHHHHHHHHHHcCCchhhcCCh-hhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 998887774 88888876431 2234567889999999988777774 9999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 197 PTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 197 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||+|||+.++..+.+.|++++++ ++|||++||+++ .+.+++|++++|+ |++.++|
T Consensus 166 Pts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 166 PSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999764 789999999997 4777999999995 6565543
No 340
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.2e-37 Score=293.49 Aligned_cols=217 Identities=28% Similarity=0.379 Sum_probs=180.8
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++.+|+++.+.. .....+++|+++|++|.+|+++.|+|.||||||||+|+|+|.++|++|+|.++|.+
T Consensus 2 i~~~~~~~~f~~------------g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~d 69 (263)
T COG1101 2 ISLSNATKTFFK------------GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVD 69 (263)
T ss_pred cccccceeeecC------------CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECcee
Confidence 456666666531 12246889999999999999999999999999999999999999999999999999
Q ss_pred CCcccc---cCceEEEcCCC--CCCCCCCHHHHHHHHHhc-C--CCC---hhHHHHHHHHHHHHc--CCcccccccccCC
Q 007383 104 IKPSSF---RKLSAYVPQHD--ACIPSLTVYETFLFSARL-L--VPK---TSQIDTIITVLLTEL--RLAHLASTRLAHN 170 (605)
Q Consensus 104 ~~~~~~---~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~-~--~~~---~~~~~~~v~~~l~~l--~L~~~~~~~~~~~ 170 (605)
++.... ...++-|+||| ...+.+|+.||+..+..- . +-. ....++...+-++.+ ||++..++++ .-
T Consensus 70 Vtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~i-gl 148 (263)
T COG1101 70 VTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRI-GL 148 (263)
T ss_pred cccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChh-hh
Confidence 874322 23578899997 478999999999987543 1 111 122333344455554 5677788886 89
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|||||||-++++.|-++.|+||+|||-|++|||.++..+++.-.++.++.+.|.+|+||.++ +..++-+|.++|++|+|
T Consensus 149 LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~I 227 (263)
T COG1101 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKI 227 (263)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999999998999999999998 58999999999999999
Q ss_pred EEec
Q 007383 251 VHHG 254 (605)
Q Consensus 251 v~~g 254 (605)
+.+-
T Consensus 228 vlDv 231 (263)
T COG1101 228 VLDV 231 (263)
T ss_pred EEEc
Confidence 9763
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.3e-36 Score=346.72 Aligned_cols=207 Identities=24% Similarity=0.341 Sum_probs=174.3
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....|+++||++.| +.+.+|+|+|++|++|++++|+|||||||||||++|+|+++|++|+|.+
T Consensus 316 ~~~~l~~~~l~~~~-----------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 378 (635)
T PRK11147 316 GKIVFEMENVNYQI-----------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378 (635)
T ss_pred CCceEEEeeeEEEE-----------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 34579999999998 3457999999999999999999999999999999999999999999998
Q ss_pred CCeeCCcccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHH
Q 007383 100 NSSPIKPSSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERR 177 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerq 177 (605)
|.++ .+||++|+. .+++.+||.|++.+........ .....+.++++.+++. +..++++ +.|||||||
T Consensus 379 -~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~-~~LSgGekq 447 (635)
T PRK11147 379 -GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPV-KALSGGERN 447 (635)
T ss_pred -CCCc-------EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChh-hhCCHHHHH
Confidence 4322 489999985 5888999999998753211111 1234678889999995 4566664 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe-CCeEE-EecC
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS-KGSVV-HHGT 255 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~-~G~iv-~~g~ 255 (605)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+.++||++++|+ +|++. |.|+
T Consensus 448 Rl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 448 RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCC
Confidence 999999999999999999999999999999999999876 249999999987 4788999999998 79986 4566
Q ss_pred hhhH
Q 007383 256 LASL 259 (605)
Q Consensus 256 ~~~~ 259 (605)
.++.
T Consensus 523 y~~y 526 (635)
T PRK11147 523 YHDA 526 (635)
T ss_pred HHHH
Confidence 5543
No 342
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.7e-36 Score=372.10 Aligned_cols=210 Identities=25% Similarity=0.308 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|+. +.+.+|+|+|++|++||.+||+|+||||||||+++|.|+++ .+|+|.+||.
T Consensus 1217 ~I~f~nVs~~Y~~---------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~ 1280 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE---------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGV 1280 (1490)
T ss_pred eEEEEEEEEEeCC---------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE
Confidence 5999999999941 23579999999999999999999999999999999999997 7999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. ...+|+.++||||++.+|+. |++|||.... +..++.+.++++..+|.+. .|+.+ ..
T Consensus 1281 di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~-------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~ 1352 (1490)
T TIGR01271 1281 SWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE-------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGY 1352 (1490)
T ss_pred EcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc-------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCC
Confidence 985 35688999999999999986 9999995421 1124567778888877543 23333 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|||+++|.++ ....+|+|++|++|+
T Consensus 1353 nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ 1428 (1490)
T TIGR01271 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVE--ALLECQQFLVIEGSS 1428 (1490)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999875 3689999999997 345699999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
++..|+++++.
T Consensus 1429 ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1429 VKQYDSIQKLL 1439 (1490)
T ss_pred EEEeCCHHHHH
Confidence 99999999885
No 343
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.9e-36 Score=279.74 Aligned_cols=144 Identities=35% Similarity=0.523 Sum_probs=133.0
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++|+++.+. ...+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 l~~~~l~~~~~-----------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~- 62 (144)
T cd03221 1 IELENLSKTYG-----------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST- 62 (144)
T ss_pred CEEEEEEEEEC-----------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-
Confidence 46889999882 346999999999999999999999999999999999999999999999984
Q ss_pred CCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHH
Q 007383 104 IKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGL 183 (605)
Q Consensus 104 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~ 183 (605)
+.++|++| ||+||+||++|||
T Consensus 63 -------~~i~~~~~----------------------------------------------------lS~G~~~rv~lar 83 (144)
T cd03221 63 -------VKIGYFEQ----------------------------------------------------LSGGEKMRLALAK 83 (144)
T ss_pred -------EEEEEEcc----------------------------------------------------CCHHHHHHHHHHH
Confidence 46899998 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 184 SLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 184 aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+|+.+|++++|||||+|||+.++..+.+.|+++ ++|||++||+++ ++.+++|++++|++|+
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999986 369999999997 5788999999999985
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=9.3e-36 Score=341.04 Aligned_cols=206 Identities=26% Similarity=0.394 Sum_probs=170.9
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++||++.|. +.+.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 507 ~~L~~~~ls~~y~----------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~ 570 (718)
T PLN03073 507 PIISFSDASFGYP----------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA 570 (718)
T ss_pred ceEEEEeeEEEeC----------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC
Confidence 5799999999983 234699999999999999999999999999999999999999999999875
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHH-hcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHHHH
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSA-RLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERRRV 179 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqRv 179 (605)
. ..+||++|+. .+.+++.++..... ...+. ..+++++++++.+|+.+ ..++. +..|||||||||
T Consensus 571 ~--------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~---~~~~~i~~~L~~~gl~~~~~~~~-~~~LSgGqkqRv 636 (718)
T PLN03073 571 K--------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNLALQP-MYTLSGGQKSRV 636 (718)
T ss_pred c--------eeEEEEeccc--cccCCcchhHHHHHHHhcCC---CCHHHHHHHHHHCCCChHHhcCC-ccccCHHHHHHH
Confidence 2 3599999975 24456666643321 11211 12356788999999974 45666 599999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE-EecChhh
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV-HHGTLAS 258 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~~~~ 258 (605)
+||++|+.+|++|||||||+|||+.++..+++.|++. .| |||++|||+. .+.++||++++|++|+++ +.|+.++
T Consensus 637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999999999999999999999999998888764 24 9999999998 488899999999999998 7888776
Q ss_pred HHHH
Q 007383 259 LETF 262 (605)
Q Consensus 259 ~~~~ 262 (605)
..++
T Consensus 712 ~~~~ 715 (718)
T PLN03073 712 YKKT 715 (718)
T ss_pred HHHH
Confidence 5544
No 345
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-36 Score=280.90 Aligned_cols=228 Identities=26% Similarity=0.360 Sum_probs=196.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|+++++....+ +++ .....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++|+|.+||+
T Consensus 4 LLeV~nLsKtF~~~~~----lf~----r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~ 75 (267)
T COG4167 4 LLEVRNLSKTFRYRTG----LFR----RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH 75 (267)
T ss_pred hhhhhhhhhhhhhhhh----hhh----hhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCc
Confidence 4788999998853221 111 13456899999999999999999999999999999999999999999999999
Q ss_pred eCCcc--cc-cCceEEEcCCCC--CCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIKPS--SF-RKLSAYVPQHDA--CIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~~~--~~-~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++.-. .+ .++|-+++||+. +.|.+.+.+-|....++ .....+++.+++.+.++.+||-+..-...++-||-|||
T Consensus 76 ~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 76 PLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred cccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence 87432 23 367999999974 78889999988888777 33456677888999999999965443333699999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
|||++||||+.+|+|++.||...+||...+.+++++..++.++.|.+-|.++.+... +..++|+|++|++|++++.|.+
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEecCceeecCCh
Confidence 999999999999999999999999999999999999999999999999999999984 8899999999999999999999
Q ss_pred hhH
Q 007383 257 ASL 259 (605)
Q Consensus 257 ~~~ 259 (605)
.++
T Consensus 235 ~~v 237 (267)
T COG4167 235 ADV 237 (267)
T ss_pred hhh
Confidence 887
No 346
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.9e-36 Score=288.44 Aligned_cols=148 Identities=26% Similarity=0.406 Sum_probs=131.7
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
+.+.+++++ +++++||+++|+||||||||||+|+|+|+++|++|+|.++|++ ++|++|+..
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---------i~~~~q~~~--------- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---------PVYKPQYID--------- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---------EEEEcccCC---------
Confidence 346789885 8999999999999999999999999999999999999999863 688888532
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVM 210 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 210 (605)
||||||||++|||+|+.+|++++|||||+|||+.++..+.
T Consensus 72 ----------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~ 111 (177)
T cd03222 72 ----------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAA 111 (177)
T ss_pred ----------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe--cChhh
Q 007383 211 QTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH--GTLAS 258 (605)
Q Consensus 211 ~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~--g~~~~ 258 (605)
+.+++++++.+.|||++||+++ .+.+++|++++|+++-.++. |++..
T Consensus 112 ~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 112 RAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred HHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCcc
Confidence 9999997654589999999997 47789999999998766654 55543
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-36 Score=339.55 Aligned_cols=205 Identities=27% Similarity=0.365 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+.+|+|+||+|++||++||+||||||||||||+|+|.++|++|+|.++|.
T Consensus 1 ~i~i~nls~~~-----------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~ 63 (638)
T PRK10636 1 MIVFSSLQIRR-----------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN 63 (638)
T ss_pred CEEEEEEEEEe-----------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 47899999999 4567999999999999999999999999999999999999999999999874
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHH-----------------------hcCC----CChhHHHHHHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSA-----------------------RLLV----PKTSQIDTIITVLLT 155 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-----------------------~~~~----~~~~~~~~~v~~~l~ 155 (605)
. .++|++|++... ..|+.+.+.-.. .+.. ....+.+++++++++
T Consensus 64 ~--------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 134 (638)
T PRK10636 64 W--------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLH 134 (638)
T ss_pred C--------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 2 378888864332 245544432110 0000 011123567889999
Q ss_pred HcCCc-ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChH
Q 007383 156 ELRLA-HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFK 234 (605)
Q Consensus 156 ~l~L~-~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~ 234 (605)
.+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||...
T Consensus 135 ~lgl~~~~~~~~~-~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~- 208 (638)
T PRK10636 135 GLGFSNEQLERPV-SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDF- 208 (638)
T ss_pred hCCCCchhhcCch-hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH-
Confidence 99996 4566664 999999999999999999999999999999999999999999999875 3599999999984
Q ss_pred HHhcCCeEEEEeCCeEE-EecChhhH
Q 007383 235 ILSTIDRILLLSKGSVV-HHGTLASL 259 (605)
Q Consensus 235 i~~~~d~v~~l~~G~iv-~~g~~~~~ 259 (605)
+.++||++++|++|+++ |.|+.+..
T Consensus 209 l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 209 LDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 88899999999999996 67876643
No 348
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=353.77 Aligned_cols=224 Identities=28% Similarity=0.443 Sum_probs=204.8
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.+..+|+++.|.. ..+ +++++|+.+++||+.|++|+|||||||++|+|.|..+|++|++.++|
T Consensus 563 ~~~~~~~L~k~y~~---------------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g 626 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG---------------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKG 626 (885)
T ss_pred ceEEEcceeeeecc---------------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEec
Confidence 45778888888731 111 99999999999999999999999999999999999999999999999
Q ss_pred eeCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 102 SPIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 102 ~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
.++.. .+.++.+||+||+|.+.+.+|.+|++.+.+++.+.+..+.++.++.+++.++|.+..++.+ +.+|||+||
T Consensus 627 ~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~-~~ySgG~kR 705 (885)
T KOG0059|consen 627 HDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQV-RTYSGGNKR 705 (885)
T ss_pred CccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccch-hhCCCcchh
Confidence 98752 2377889999999999999999999999999987777778888999999999999999985 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|+++|.||+.+|++++|||||+|+||.+++.++++++++.+. |+.||.|||.++ |...+|||+.+|.+|++...|+++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChH
Confidence 999999999999999999999999999999999999999874 569999999998 689999999999999999999999
Q ss_pred hHHHHHH
Q 007383 258 SLETFLL 264 (605)
Q Consensus 258 ~~~~~~~ 264 (605)
++...|.
T Consensus 784 ~LKsrfG 790 (885)
T KOG0059|consen 784 ELKSRYG 790 (885)
T ss_pred HHHhhcC
Confidence 9986664
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=8.2e-36 Score=340.95 Aligned_cols=194 Identities=21% Similarity=0.306 Sum_probs=163.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 451 ~i~~~nv~~~~~----------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~- 513 (659)
T TIGR00954 451 GIKFENIPLVTP----------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA- 513 (659)
T ss_pred eEEEEeeEEECC----------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-
Confidence 599999999873 234699999999999999999999999999999999999999999998763
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCCcccccccc--------cCCCCH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP-KTSQIDTIITVLLTELRLAHLASTRL--------AHNLSG 173 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~~--------~~~LSg 173 (605)
++.++||+|++.+++. |++||+.++...... .....+++++++++.+++.+..++.. .+.|||
T Consensus 514 -------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSg 585 (659)
T TIGR00954 514 -------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSG 585 (659)
T ss_pred -------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCH
Confidence 4679999999988877 999999876432110 01112456778899999976554321 368999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
|||||++|||+|+++|++++|||||+|||+.+...+.+.+++. |+|+|+++|+++ ..+.+|++++|+.
T Consensus 586 GqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~----~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF----GITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999988762 789999999987 3588999999973
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.4e-35 Score=335.15 Aligned_cols=204 Identities=29% Similarity=0.369 Sum_probs=164.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|.
T Consensus 3 ~l~i~~ls~~~-----------------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~ 65 (635)
T PRK11147 3 LISIHGAWLSF-----------------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD 65 (635)
T ss_pred EEEEeeEEEEe-----------------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC
Confidence 68999999999 3467999999999999999999999999999999999999999999999863
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHH------------------------------HHhcC---C-CChhHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLF------------------------------SARLL---V-PKTSQIDT 148 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~------------------------------~~~~~---~-~~~~~~~~ 148 (605)
. .++|++|++......+|.+++.. ...+. . ....+.++
T Consensus 66 ~--------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 137 (635)
T PRK11147 66 L--------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLEN 137 (635)
T ss_pred C--------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHH
Confidence 1 25677765433233455554321 11000 0 00112356
Q ss_pred HHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 007383 149 IITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSI 228 (605)
Q Consensus 149 ~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~ 228 (605)
+++++++.+|+.. ++. +.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++|
T Consensus 138 ~~~~~l~~lgl~~--~~~-~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~----~tvlivs 210 (635)
T PRK11147 138 RINEVLAQLGLDP--DAA-LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ----GSIIFIS 210 (635)
T ss_pred HHHHHHHhCCCCC--CCc-hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC----CEEEEEe
Confidence 7889999999963 555 49999999999999999999999999999999999999999999999872 4999999
Q ss_pred CCCChHHHhcCCeEEEEeCCeEE-EecChhhH
Q 007383 229 HQPSFKILSTIDRILLLSKGSVV-HHGTLASL 259 (605)
Q Consensus 229 H~~~~~i~~~~d~v~~l~~G~iv-~~g~~~~~ 259 (605)
||... +.+++|++++|++|+++ +.|+.++.
T Consensus 211 Hd~~~-l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 211 HDRSF-IRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred CCHHH-HHHhcCeEEEEECCEEEEecCCHHHH
Confidence 99984 78899999999999997 56887653
No 351
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-36 Score=279.29 Aligned_cols=178 Identities=28% Similarity=0.414 Sum_probs=160.1
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc--ccccCceEEEcCCCCCCCCCCH
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP--SSFRKLSAYVPQHDACIPSLTV 128 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv 128 (605)
+...++.++||++.+||++-|.|||||||||||++|+|+.+|++|+|.++|.+++. +.+++.+-|+-.++.+-+.+||
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 56789999999999999999999999999999999999999999999999998753 3356778899889999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 007383 129 YETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFN 208 (605)
Q Consensus 129 ~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~ 208 (605)
.|||.|-.+..+. .....+.+.++.+||....|.++ ++||-||||||+|||-+++.+++.|||||+++||......
T Consensus 93 ~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~-~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~ 168 (209)
T COG4133 93 LENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPV-GQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVAL 168 (209)
T ss_pred HHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccch-hhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHH
Confidence 9999998776432 23456788999999999999886 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCh
Q 007383 209 VMQTLKSISASRHRTVILSIHQPSF 233 (605)
Q Consensus 209 i~~~L~~l~~~~g~tii~~~H~~~~ 233 (605)
+-.++..-+++ |-.||.+||||..
T Consensus 169 l~~l~~~H~~~-GGiVllttHq~l~ 192 (209)
T COG4133 169 LTALMAAHAAQ-GGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHhcC-CCEEEEecCCccC
Confidence 99999988765 5699999999864
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-35 Score=361.16 Aligned_cols=203 Identities=27% Similarity=0.411 Sum_probs=170.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|++++++. ..++.+|+|+|+++++||.++|+||||||||||+++|.|.++|++|.+.
T Consensus 614 ~I~~~~vsF~y~~--------------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---- 675 (1495)
T PLN03232 614 AISIKNGYFSWDS--------------KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---- 675 (1495)
T ss_pred cEEEEeeEEEcCC--------------CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----
Confidence 5999999999941 1235699999999999999999999999999999999999999998763
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---cCCCC
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---AHNLS 172 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~~~LS 172 (605)
.+++.++||+|++.+++. |++|||.|+... .+++.+++++..+|.+.. ++.+ ..+||
T Consensus 676 -----~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~-------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LS 742 (1495)
T PLN03232 676 -----VIRGSVAYVPQVSWIFNA-TVRENILFGSDF-------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS 742 (1495)
T ss_pred -----EecCcEEEEcCccccccc-cHHHHhhcCCcc-------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccC
Confidence 356789999999999975 999999987421 234566666666664432 3333 34799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||||||++||||++++|+|++||||||+||+.+++.+++. ++... +++|+|++||+++ ..+.+|+|++|++|+++
T Consensus 743 GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIILVSEGMIK 818 (1495)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999765 55443 4789999999986 46789999999999999
Q ss_pred EecChhhHH
Q 007383 252 HHGTLASLE 260 (605)
Q Consensus 252 ~~g~~~~~~ 260 (605)
+.|+.+++.
T Consensus 819 ~~Gt~~eL~ 827 (1495)
T PLN03232 819 EEGTFAELS 827 (1495)
T ss_pred EecCHHHHH
Confidence 999998874
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-34 Score=357.32 Aligned_cols=202 Identities=27% Similarity=0.428 Sum_probs=171.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCc-cEEEECC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTN-GTILLNS 101 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~-G~I~~~g 101 (605)
.++++|++++++. ...+.+|+|+|+++++||.++|+||||||||||+++|.|.++|++ |+|.+
T Consensus 614 ~I~~~nvsf~y~~--------------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-- 677 (1622)
T PLN03130 614 AISIKNGYFSWDS--------------KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-- 677 (1622)
T ss_pred ceEEEeeEEEccC--------------CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--
Confidence 5999999999942 123569999999999999999999999999999999999999999 89974
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---cCCC
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---AHNL 171 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~~~L 171 (605)
++.++||+|++.+++ .|++|||.|+... .+++.+++++..+|.+.. ++.+ ...|
T Consensus 678 --------~~~Iayv~Q~p~Lfn-gTIreNI~fg~~~-------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~L 741 (1622)
T PLN03130 678 --------RGTVAYVPQVSWIFN-ATVRDNILFGSPF-------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741 (1622)
T ss_pred --------cCeEEEEcCccccCC-CCHHHHHhCCCcc-------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCC
Confidence 456999999999987 4999999987421 245566777777765432 3333 3469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ-TLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|||||||++||||++++|+|++||||||+||+.+++.+++ .++.+. +++|+|++||+++ ..+.+|+|++|++|++
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLH--FLSQVDRIILVHEGMI 817 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHh--HHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999998875 566553 3789999999986 4678999999999999
Q ss_pred EEecChhhHH
Q 007383 251 VHHGTLASLE 260 (605)
Q Consensus 251 v~~g~~~~~~ 260 (605)
++.|+.+++.
T Consensus 818 ~e~Gt~~eL~ 827 (1622)
T PLN03130 818 KEEGTYEELS 827 (1622)
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9.3e-35 Score=278.67 Aligned_cols=157 Identities=27% Similarity=0.378 Sum_probs=134.0
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
.+.+|+|+|+++++||+++|+||||||||||||+|.+ ++|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~--~~~~~~~~~~~q------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLP--KFSRNKLIFIDQ------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccc--ccccccEEEEhH-------------
Confidence 4679999999999999999999999999999999963 699999988732 112344788877
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHH
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHD--PAVLLLDEPTSGLDSRSAFN 208 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~--P~illLDEPtsgLD~~~~~~ 208 (605)
.+.++.+++... .+++ ++.||||||||++||++|+.+ |++++|||||+|||+.++..
T Consensus 68 -------------------~~~l~~~~L~~~~~~~~-~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 -------------------LQFLIDVGLGYLTLGQK-LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127 (176)
T ss_pred -------------------HHHHHHcCCCccccCCC-cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH
Confidence 235677888653 5666 499999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 209 VMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 209 i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
+.+.|+++++ .|+|||++||+++. + +.+|++++|.+|+.
T Consensus 128 l~~~l~~~~~-~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 128 LLEVIKGLID-LGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 9999999975 58999999999873 4 68999999976544
No 355
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-35 Score=270.53 Aligned_cols=214 Identities=27% Similarity=0.427 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++++|+.| +...--+||||++.|||+++|+|+|||||||||++|++++.|+.|+|.+...
T Consensus 6 LL~V~~lsk~Y-----------------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r 68 (258)
T COG4107 6 LLSVSGLSKLY-----------------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR 68 (258)
T ss_pred ceeehhhhhhh-----------------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence 58899999988 3455789999999999999999999999999999999999999999999653
Q ss_pred ---eCC-----ccc----ccCceEEEcCCCC--CCCCC----CHHHHHH-HHHhcCCCChhHHHHHHHHHHHHcCCcccc
Q 007383 103 ---PIK-----PSS----FRKLSAYVPQHDA--CIPSL----TVYETFL-FSARLLVPKTSQIDTIITVLLTELRLAHLA 163 (605)
Q Consensus 103 ---~~~-----~~~----~~~~i~yv~Q~~~--l~~~l----Tv~e~l~-~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~ 163 (605)
+.+ ..+ .|-.-|+|.|+|. +-... .+.|-++ .+++- ..+.++...+++++++++...
T Consensus 69 ~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH----YG~iR~~a~~WL~~VEI~~~R 144 (258)
T COG4107 69 DGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH----YGNIRAEAQDWLEEVEIDLDR 144 (258)
T ss_pred CCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh----hhhHHHHHHHHHHhcccCccc
Confidence 222 111 2334699999963 33222 3344332 22222 234667788899999886543
Q ss_pred -cccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeE
Q 007383 164 -STRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRI 242 (605)
Q Consensus 164 -~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v 242 (605)
|.. |+.+|||++||+.|||-|++.|++.|+||||-|||..-+..++++++.+..+-|.+++++|||... +.-++||.
T Consensus 145 iDD~-PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rl 222 (258)
T COG4107 145 IDDL-PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRL 222 (258)
T ss_pred ccCc-ccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcc
Confidence 334 699999999999999999999999999999999999999999999999999999999999999974 56679999
Q ss_pred EEEeCCeEEEecChhhH
Q 007383 243 LLLSKGSVVHHGTLASL 259 (605)
Q Consensus 243 ~~l~~G~iv~~g~~~~~ 259 (605)
++|++|++++.|-.+.+
T Consensus 223 mvmk~g~vve~GLTDrv 239 (258)
T COG4107 223 MVMKQGQVVESGLTDRV 239 (258)
T ss_pred eeecCCCEecccccccc
Confidence 99999999999987765
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-34 Score=272.24 Aligned_cols=153 Identities=41% Similarity=0.666 Sum_probs=138.6
Q ss_pred EEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCC
Q 007383 26 GSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105 (605)
Q Consensus 26 ~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~ 105 (605)
++|+++.++ .+.+++++|+++++||+++|+|+||||||||+++|+|.++|.+|+|.++|.++.
T Consensus 2 ~~~~~~~~~-----------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~ 64 (157)
T cd00267 2 IENLSFRYG-----------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA 64 (157)
T ss_pred eEEEEEEeC-----------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc
Confidence 578888873 346999999999999999999999999999999999999999999999998764
Q ss_pred c---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH
Q 007383 106 P---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG 182 (605)
Q Consensus 106 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia 182 (605)
. ...++.++|++| |||||+||++||
T Consensus 65 ~~~~~~~~~~i~~~~q----------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 65 KLPLEELRRRIGYVPQ----------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred cCCHHHHHhceEEEee----------------------------------------------------CCHHHHHHHHHH
Confidence 2 234567899988 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 183 LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 183 ~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
++++.+|++++|||||+|||..++..+.+.++++++. ++|++++||+++ ++...+|+++++++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999765 789999999998 4778889999999875
No 357
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.1e-35 Score=262.95 Aligned_cols=202 Identities=26% Similarity=0.315 Sum_probs=172.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP---TNGTILL 99 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~---~~G~I~~ 99 (605)
++.++||+... ++...|-|+|++|.+||++-||||||||||||+..+.|.+.+ .+|++++
T Consensus 2 ~l~l~nvsl~l-----------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l 64 (213)
T COG4136 2 MLCLKNVSLRL-----------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWL 64 (213)
T ss_pred ceeeeeeeecC-----------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEE
Confidence 46788888644 467899999999999999999999999999999999999987 5899999
Q ss_pred CCeeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 100 NSSPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 100 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
|+++++. ..-+|++|.++||+.+||.++|.+|+.|+.-.. .+...+++.++..+++.||+...++. |.+||||||-|
T Consensus 65 ~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~-~KG~aRr~~a~aAL~~~gL~g~f~~d-P~tlSGGQrAR 142 (213)
T COG4136 65 NEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT-LKGNARRNAANAALERSGLDGAFHQD-PATLSGGQRAR 142 (213)
T ss_pred CCeeccccchhhhheeeeecccccccccccccceEEecCcc-cccHHHHhhHHHHHHHhccchhhhcC-hhhcCcchHHH
Confidence 9999863 345788999999999999999999999874321 12335667788999999999988877 59999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
|++-|+|+..|+.++||||+|.||..-+.+..+..-.-..+.|..+|.+|||... + ..-.||+-|
T Consensus 143 vaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D-v-pagsrVie~ 207 (213)
T COG4136 143 VALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD-V-PAGSRVIEM 207 (213)
T ss_pred HHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc-C-CCCCeeeee
Confidence 9999999999999999999999999999999998877666679999999999863 3 333455443
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.3e-35 Score=328.49 Aligned_cols=182 Identities=25% Similarity=0.343 Sum_probs=155.4
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-----------ECCeeCCcc-----cccCceEEE
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL-----------LNSSPIKPS-----SFRKLSAYV 116 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~-----------~~g~~~~~~-----~~~~~i~yv 116 (605)
..+|++++ .+++||++||+||||||||||||+|+|+++|++|+|. ++|+++... ..+..+++.
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 46999999 9999999999999999999999999999999999998 999876321 112335666
Q ss_pred cCCCCCCCC---CCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEE
Q 007383 117 PQHDACIPS---LTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLL 193 (605)
Q Consensus 117 ~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ill 193 (605)
+|.....+. .||+|++... +..++++++++.++|.+..++.+ .+|||||||||+||++|+.+|++|+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~-~~LSgGe~qrv~ia~al~~~p~lll 235 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDI-SELSGGELQRVAIAAALLRDADFYF 235 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCCh-hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 665333332 3999998632 23457889999999998888885 9999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 194 LDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 194 LDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
|||||++||+.++..+.+.|+++++ |+|||+++|+++ ++..++|++++|+++
T Consensus 236 LDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 236 FDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999975 789999999998 588999999999863
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.1e-34 Score=352.01 Aligned_cols=202 Identities=25% Similarity=0.407 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~---------------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR---------------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG- 699 (1522)
T ss_pred cEEEEEeEEEcCC---------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-
Confidence 6999999999841 235699999999999999999999999999999999999999999999987
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc------c-----cccccccCCC
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA------H-----LASTRLAHNL 171 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~------~-----~~~~~~~~~L 171 (605)
.++||+|++.+++ .|++||+.++... +.+ +.+++++..++. + ..+.+ +.+|
T Consensus 700 ---------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~---~~~----~~~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~L 761 (1522)
T TIGR00957 700 ---------SVAYVPQQAWIQN-DSLRENILFGKAL---NEK----YYQQVLEACALLPDLEILPSGDRTEIGEK-GVNL 761 (1522)
T ss_pred ---------EEEEEcCCccccC-CcHHHHhhcCCcc---CHH----HHHHHHHHhCCHHHHHhcCCCCCceecCC-CCCC
Confidence 4899999998875 6999999986421 111 122223322221 1 11223 4789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSIS-ASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~-~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|||||||++||||++.+|++++||||||+||+.+++.+.+.+.+.. ..+++|+|++||+++. .+.+|++++|++|++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKI 839 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999999997531 1246899999999973 456999999999999
Q ss_pred EEecChhhHH
Q 007383 251 VHHGTLASLE 260 (605)
Q Consensus 251 v~~g~~~~~~ 260 (605)
+..|+.+++.
T Consensus 840 ~~~g~~~~l~ 849 (1522)
T TIGR00957 840 SEMGSYQELL 849 (1522)
T ss_pred EeeCCHHHHH
Confidence 9999998874
No 360
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-35 Score=299.95 Aligned_cols=218 Identities=29% Similarity=0.444 Sum_probs=181.0
Q ss_pred CCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007383 19 LKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL 98 (605)
Q Consensus 19 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~ 98 (605)
...-.+.|+|+++.|. +.+++|+++|+++++|+.+||+||||+||||++++|-..+++.+|.|.
T Consensus 258 ~~~g~v~F~~V~F~y~----------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~ 321 (497)
T COG5265 258 VRLGAVAFINVSFAYD----------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321 (497)
T ss_pred cccceEEEEEEEeecc----------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE
Confidence 3344599999999994 568899999999999999999999999999999999999999999999
Q ss_pred ECCeeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHH-----HHHHHHHcCCcccccccc---
Q 007383 99 LNSSPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTI-----ITVLLTELRLAHLASTRL--- 167 (605)
Q Consensus 99 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~-----v~~~l~~l~L~~~~~~~~--- 167 (605)
++|+++. .+..|+-||.||||..||.+ |...|+.++.--. +.+++.+. +...++. +.+..++.+
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~a--t~eev~aaa~~aqi~~fi~~--lP~gy~t~Vger 396 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDA--TAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGER 396 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccc--cHHHHHHHHHHhhhhHHHHh--Cchhhhcccchh
Confidence 9999974 45688999999999998865 9999998873211 22222221 2222222 233344554
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
.-.|||||||||+|||+++++|+||++||.||+||..+.+++...|++.+ .|+|.+++.|.++. + --+|+|++|++
T Consensus 397 glklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlst-i-~~adeiivl~~ 472 (497)
T COG5265 397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLST-I-IDADEIIVLDN 472 (497)
T ss_pred eeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhh-c-cCCceEEEeeC
Confidence 23589999999999999999999999999999999999999999999997 47899999999984 4 45899999999
Q ss_pred CeEEEecChhhHHH
Q 007383 248 GSVVHHGTLASLET 261 (605)
Q Consensus 248 G~iv~~g~~~~~~~ 261 (605)
|+|++.|+.+++..
T Consensus 473 g~i~erg~h~~ll~ 486 (497)
T COG5265 473 GRIVERGTHEELLA 486 (497)
T ss_pred CEEEecCcHHHHHH
Confidence 99999999988754
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.2e-33 Score=344.72 Aligned_cols=189 Identities=26% Similarity=0.455 Sum_probs=154.4
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|++|+|.++| .++||+|++.+++. ||+||+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eNI 507 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----------RISFSPQTSWIMPG-TIKDNI 507 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----------EEEEEeCCCccCCc-cHHHHH
Confidence 5699999999999999999999999999999999999999999999987 38999999999875 999999
Q ss_pred HHHHhcCCCChhHHHHH-----HHHHHHHcCCcc--cccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007383 133 LFSARLLVPKTSQIDTI-----ITVLLTELRLAH--LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRS 205 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~-----v~~~l~~l~L~~--~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~ 205 (605)
.|+... .....++. .++.++.+.... ....+ +..||||||||++||||++.+|+++||||||+|||+.+
T Consensus 508 ~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~ 583 (1490)
T TIGR01271 508 IFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583 (1490)
T ss_pred Hhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 987432 11111111 112222221110 11122 47899999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 206 AFNVMQT-LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 206 ~~~i~~~-L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
+..+.+. ++++. +|+|+|++||+++. + +.+|++++|++|+++..|+.+++.
T Consensus 584 ~~~i~~~~l~~~~--~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 584 EKEIFESCLCKLM--SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHh--cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999984 66764 37899999999973 4 569999999999999999998874
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=307.77 Aligned_cols=206 Identities=32% Similarity=0.394 Sum_probs=175.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++|++++| +.+.+++|+|+++.+|+.+||+|+||||||||||+|+|...|++|+|...+
T Consensus 2 ~~i~~~~ls~~~-----------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 2 SMITLENLSLAY-----------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred ceEEEeeeEEee-----------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 468999999999 568899999999999999999999999999999999999999999998753
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-CC-----------------------------ChhHHHHHHH
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL-VP-----------------------------KTSQIDTIIT 151 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~-----------------------------~~~~~~~~v~ 151 (605)
. ..++|++|++...+..||.+.+.-+..-. .. ..-+.+.++.
T Consensus 65 ~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~ 136 (530)
T COG0488 65 G--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136 (530)
T ss_pred C--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHH
Confidence 2 24899999999999999999887653210 00 0011245778
Q ss_pred HHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 007383 152 VLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQP 231 (605)
Q Consensus 152 ~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 231 (605)
.++..+|+.+. ++++ ++||||||+||+||++|+.+|++|||||||++||..+..-+-+.|++. .| |+|++|||-
T Consensus 137 ~~L~gLg~~~~-~~~~-~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR 210 (530)
T COG0488 137 EALLGLGFPDE-DRPV-SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDR 210 (530)
T ss_pred HHHhcCCCCcc-cCch-hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCH
Confidence 88999999876 6775 999999999999999999999999999999999999999999999875 36 999999997
Q ss_pred ChHHHhcCCeEEEEeCCeE-EEecChhhH
Q 007383 232 SFKILSTIDRILLLSKGSV-VHHGTLASL 259 (605)
Q Consensus 232 ~~~i~~~~d~v~~l~~G~i-v~~g~~~~~ 259 (605)
.+ +-+.|++|+-++.|++ .|.|+.+..
T Consensus 211 ~F-Ld~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 211 YF-LDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HH-HHHHhhheEEecCCceeEecCCHHHH
Confidence 65 7889999999999986 477776653
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2e-33 Score=321.76 Aligned_cols=216 Identities=21% Similarity=0.246 Sum_probs=162.6
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC---CCCccE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART---SPTNGT 96 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~---~~~~G~ 96 (605)
..-.|+++|++++| +.+.+|+|+|++|++|+.+||+|||||||||||++|+|+. .|.+|+
T Consensus 174 ~~~~I~i~nls~~y-----------------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~ 236 (718)
T PLN03073 174 AIKDIHMENFSISV-----------------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ 236 (718)
T ss_pred CceeEEEceEEEEe-----------------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCE
Confidence 34469999999999 3456999999999999999999999999999999999975 578899
Q ss_pred EEECCeeCCcc-----------------cccCceEEEcCCCCCCCCCCHHHHH-----------------HHHHhcCC-C
Q 007383 97 ILLNSSPIKPS-----------------SFRKLSAYVPQHDACIPSLTVYETF-----------------LFSARLLV-P 141 (605)
Q Consensus 97 I~~~g~~~~~~-----------------~~~~~i~yv~Q~~~l~~~lTv~e~l-----------------~~~~~~~~-~ 141 (605)
|.+.++..... ..++.+++++|++.+... ++.++. .-....+. .
T Consensus 237 I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 315 (718)
T PLN03073 237 ILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELI 315 (718)
T ss_pred EEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhc
Confidence 97655432100 012335677765432211 111111 10000000 0
Q ss_pred ChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007383 142 KTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASR 220 (605)
Q Consensus 142 ~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~ 220 (605)
...+.++++.++++.+|+. +..++. +.+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++
T Consensus 316 ~~~~~~~r~~~~L~~lgl~~~~~~~~-~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---- 390 (718)
T PLN03073 316 DAYTAEARAASILAGLSFTPEMQVKA-TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---- 390 (718)
T ss_pred CcchHHHHHHHHHHHCCCChHHHhCc-hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----
Confidence 1113456777888899986 345555 4999999999999999999999999999999999999999999999886
Q ss_pred CcEEEEEeCCCChHHHhcCCeEEEEeCCeEE-EecChhhH
Q 007383 221 HRTVILSIHQPSFKILSTIDRILLLSKGSVV-HHGTLASL 259 (605)
Q Consensus 221 g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~~~~~ 259 (605)
+.|||++|||.. .+.+.||++++|++|+++ |.|+.++.
T Consensus 391 ~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 391 PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 469999999987 478899999999999996 77877543
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-32 Score=322.18 Aligned_cols=212 Identities=26% Similarity=0.361 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|++..|.. +...+|||||++|+|||.+||+|..|||||||.++|-++..|.+|+|.+||.
T Consensus 1138 ~I~f~~~~~RYrp---------------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRP---------------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGV 1202 (1381)
T ss_pred eEEEEEeEEEeCC---------------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCe
Confidence 5999999999942 3457999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. ..++|++++.+||||.+|.. |+|+||.=. .+-.++.+.++|+..+|.+. .|..+ ..
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf-------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~ 1274 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF-------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGE 1274 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceecC-ccccccCcc-------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCc
Confidence 985 36789999999999999986 999998522 11224445566666555432 33333 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
++|-||||-+++||||+++.+||+|||.|++.|+.+-..|-+.|++-= .++|||.+.|..+. +.+ +|||+||++|+
T Consensus 1275 N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~T-Vmd-~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1275 NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNT-VMD-SDRVLVLDAGR 1350 (1381)
T ss_pred cCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccch-hhh-cCeEEEeeCCe
Confidence 899999999999999999999999999999999999999999999854 47999999999985 655 89999999999
Q ss_pred EEEecChhhHHH
Q 007383 250 VVHHGTLASLET 261 (605)
Q Consensus 250 iv~~g~~~~~~~ 261 (605)
++++|+|+++.+
T Consensus 1351 v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1351 VVEFDSPAELLS 1362 (1381)
T ss_pred EeecCChHHHHh
Confidence 999999999853
No 365
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3e-32 Score=335.03 Aligned_cols=191 Identities=28% Similarity=0.421 Sum_probs=155.9
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
.+.+|+|+|+++++||+++|+|||||||||||++|+|.++|++|+|.++ +.+||++|++.+++ .||+||
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~en 740 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----------RSIAYVPQQAWIMN-ATVRGN 740 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----------CeEEEEeCCCccCC-CcHHHH
Confidence 4679999999999999999999999999999999999999999999763 46999999998874 699999
Q ss_pred HHHHHhcCCCChhHHH-----HHHHHHHHHc--CCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007383 132 FLFSARLLVPKTSQID-----TIITVLLTEL--RLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSR 204 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~ 204 (605)
+.++... ..+..+ ..+++.++.+ |+....+.+ +.+||||||||++|||||+.+|++++|||||++||+.
T Consensus 741 I~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 741 ILFFDEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred HHcCChh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 9985321 111111 1223344444 555444555 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
++..+++.+..... .|+|+|++||+++. .+.+|++++|++|++++.|+.+++.
T Consensus 817 ~~~~i~~~~~~~~~-~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 817 VGERVVEECFLGAL-AGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHhh-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999875432222 37899999999863 4789999999999999999998864
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-33 Score=254.38 Aligned_cols=214 Identities=28% Similarity=0.355 Sum_probs=178.1
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|.++|+++++..-. +..-.-++++|+||+++.||++++-|||||||||||++|-|.+.|++|+|.+..
T Consensus 3 ~~l~v~~~~KtFtlH~----------q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H 72 (235)
T COG4778 3 TPLNVSNVSKTFTLHQ----------QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRH 72 (235)
T ss_pred ceeeeecchhheEeee----------cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEe
Confidence 4588999999885321 112245799999999999999999999999999999999999999999999864
Q ss_pred ee--CC-----cc---c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCC
Q 007383 102 SP--IK-----PS---S-FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN 170 (605)
Q Consensus 102 ~~--~~-----~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~ 170 (605)
+. ++ +. . .++.+|||.|.-...|..+..|..+-.+.-.+.+.+..++++..++.++++.+..-...|..
T Consensus 73 ~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaT 152 (235)
T COG4778 73 EGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPAT 152 (235)
T ss_pred CcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcc
Confidence 32 22 11 2 34569999998888888888887776654466677788899999999999976554455799
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+||||+|||.|||.++.+-+||+|||||+.||..++..++++|++-+ ..|..+|=+-||-+. -...+||++-+..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~GaAlvGIFHDeev-re~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGAALVGIFHDEEV-REAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCceEEEeeccHHH-HHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999999975 469999999999653 3457999998764
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=2e-29 Score=297.25 Aligned_cols=206 Identities=29% Similarity=0.430 Sum_probs=175.4
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....++++|.+++-+. ......|+|+|+++++|+++||+||-|||||+||.+|.|-++..+|+|.+
T Consensus 515 ~~~~i~i~~~sfsW~~--------------~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v 580 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDS--------------ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV 580 (1381)
T ss_pred CCceEEEeeeeEecCC--------------CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE
Confidence 3445999999997631 23344899999999999999999999999999999999999999999999
Q ss_pred CCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccccc-------c---cC
Q 007383 100 NSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR-------L---AH 169 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~---~~ 169 (605)
+|. ++||+|++.+++ -||+||+.|+..+ .+++-+++++...|++..+.. + .-
T Consensus 581 ~gs----------iaYv~Q~pWI~n-gTvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 581 NGS----------VAYVPQQPWIQN-GTVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred cCe----------EEEeccccHhhC-CcHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 986 899999999886 4999999998533 355667777777776544322 1 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||+++|||+.+|.+|++||.|.|++|++..+.+.+..-+-.- +++|+|.+|||.. ..+.+|.|++|++|+
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~--~L~~ad~Iivl~~G~ 719 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQ--FLPHADQIIVLKDGK 719 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchh--hhhhCCEEEEecCCe
Confidence 7999999999999999999999999999999999999999876654433 4789999999975 688999999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
|...|+.+|+.
T Consensus 720 I~~~Gty~el~ 730 (1381)
T KOG0054|consen 720 IVESGTYEELL 730 (1381)
T ss_pred EecccCHHHHH
Confidence 99999999986
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=1.7e-31 Score=267.15 Aligned_cols=192 Identities=28% Similarity=0.374 Sum_probs=137.5
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEECC-------ee---C-Cc--cccc-CceEE
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLL-DILSARTSPTNGTILLNS-------SP---I-KP--SSFR-KLSAY 115 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL-~~l~g~~~~~~G~I~~~g-------~~---~-~~--~~~~-~~i~y 115 (605)
....+|+|+|+++++||+++|+||||||||||+ ..+.. +|++.+.+ .. . .+ ...+ ...++
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 346799999999999999999999999999995 44431 23322110 00 0 01 1111 12344
Q ss_pred EcCCCC--CCCCCCHH---HHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHHHHHHHHHHhhCC
Q 007383 116 VPQHDA--CIPSLTVY---ETFLFSARLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDP 189 (605)
Q Consensus 116 v~Q~~~--l~~~lTv~---e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqRv~ia~aL~~~P 189 (605)
..|++. ..+..+|. |...+...+.. .....++ .+.++.+++.+ ..++. +.+||||||||++||++|+.+|
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~l~~~~~~~~-~~~LSgG~~qrv~laral~~~p 156 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLFA--RVGIRER-LGFLVDVGLGYLTLSRS-APTLSGGEAQRIRLATQIGSGL 156 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHCCCCcccccCc-cCcCCHHHHHHHHHHHHHHhCC
Confidence 444432 33444544 32222221211 1122333 56899999976 35666 5999999999999999999998
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEec
Q 007383 190 --AVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHG 254 (605)
Q Consensus 190 --~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g 254 (605)
++++|||||+|||+.++..+.+.|+++++ .|.|||++||+++ ++ +.||++++| ++|+|+++|
T Consensus 157 ~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 157 TGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 59999999999999999999999999975 4889999999997 34 689999999 999999876
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=7.2e-31 Score=289.14 Aligned_cols=206 Identities=30% Similarity=0.373 Sum_probs=173.5
Q ss_pred CCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007383 19 LKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL 98 (605)
Q Consensus 19 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~ 98 (605)
.....++++|+++.|. +.+.+++++||.+.+|+.+||+||||+|||||||+|+|...|.+|+|.
T Consensus 317 ~g~~vl~~~~~~~~y~----------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~ 380 (530)
T COG0488 317 LGKLVLEFENVSKGYD----------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380 (530)
T ss_pred CCCeeEEEeccccccC----------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE
Confidence 4567799999999994 237899999999999999999999999999999999999999999998
Q ss_pred ECCeeCCcccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-cccccCCCCHHHH
Q 007383 99 LNSSPIKPSSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-STRLAHNLSGGER 176 (605)
Q Consensus 99 ~~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~~~~~LSgGer 176 (605)
+.-. -.+||..|+. .+.+..|+.|++.-... +..+..+...|..+++.... .++ ++.||||||
T Consensus 381 ~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~~~~~~~-v~~LSGGEk 445 (530)
T COG0488 381 VGET--------VKIGYFDQHRDELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTGEDQEKP-VGVLSGGEK 445 (530)
T ss_pred eCCc--------eEEEEEEehhhhcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCChHHHhCc-hhhcCHhHH
Confidence 7521 3489999985 44578899998874321 11267788999999997543 445 599999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE-EecC
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV-HHGT 255 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~ 255 (605)
.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|.+.. | |||++|||... +...+++++.+.+ ++. +.|.
T Consensus 446 ~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---G-tvl~VSHDr~F-l~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE---G-TVLLVSHDRYF-LDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC---C-eEEEEeCCHHH-HHhhcceEEEEcC-ceeEcCCC
Confidence 99999999999999999999999999999999999999872 5 99999999886 8899999999998 554 4477
Q ss_pred hhhHHH
Q 007383 256 LASLET 261 (605)
Q Consensus 256 ~~~~~~ 261 (605)
.++..+
T Consensus 520 y~~y~~ 525 (530)
T COG0488 520 YEDYLE 525 (530)
T ss_pred HHHHHH
Confidence 665443
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=9.2e-32 Score=247.35 Aligned_cols=131 Identities=46% Similarity=0.738 Sum_probs=117.8
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc---ccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
|+|+|+++++||+++|+|+||||||||+++|+|..+|++|+|.++|+++.. ...++.++|++|++.+++.+||+||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 799999999999999999999999999999999999999999999999864 4567889999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccc---cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL---AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS 199 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~---~~~LSgGerqRv~ia~aL~~~P~illLDEPts 199 (605)
..+++++++++.+++.+..++.+ ..+||||||||++||+||+.+|++++|||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23556888999998877554442 38999999999999999999999999999996
No 371
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.2e-30 Score=262.91 Aligned_cols=195 Identities=27% Similarity=0.355 Sum_probs=154.0
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh--------CCC--CCC-----------ccEEEECCeeCCc----
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILS--------ART--SPT-----------NGTILLNSSPIKP---- 106 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~--------g~~--~~~-----------~G~I~~~g~~~~~---- 106 (605)
...-|+|+|..|+.|++++|.|+||||||||++.+. +.. .|. +--|.++..|+..
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs 86 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS 86 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence 345799999999999999999999999999998552 110 111 1136677766531
Q ss_pred ---------ccccC----------------ceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc
Q 007383 107 ---------SSFRK----------------LSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH 161 (605)
Q Consensus 107 ---------~~~~~----------------~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~ 161 (605)
+..|+ .+.|..++......+||.|++.|...+. ..+++.++++.+||..
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~------~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP------KIARKLQTLCDVGLGY 160 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh------hHHHHHHHHHHcCCch
Confidence 11111 1456666666667899999999876541 1345678999999987
Q ss_pred -cccccccCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHh
Q 007383 162 -LASTRLAHNLSGGERRRVSIGLSLLHD---PAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILS 237 (605)
Q Consensus 162 -~~~~~~~~~LSgGerqRv~ia~aL~~~---P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 237 (605)
..++. +..||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++ |.|||+++|+++. + +
T Consensus 161 l~l~~~-~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~-i-~ 236 (261)
T cd03271 161 IKLGQP-ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDV-I-K 236 (261)
T ss_pred hhhcCc-cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH-H-H
Confidence 35666 499999999999999999996 7999999999999999999999999999764 7899999999973 4 6
Q ss_pred cCCeEEEE------eCCeEEEecCh
Q 007383 238 TIDRILLL------SKGSVVHHGTL 256 (605)
Q Consensus 238 ~~d~v~~l------~~G~iv~~g~~ 256 (605)
.+|+++.| ++|++++.|++
T Consensus 237 ~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 237 CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 79999999 89999999874
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=2.8e-30 Score=252.81 Aligned_cols=164 Identities=20% Similarity=0.285 Sum_probs=133.3
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---------ccEEEECCeeCCcccccCceEEEcCCCCCCCCCC
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT---------NGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLT 127 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~---------~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (605)
+++++++++| +++|+||||||||||+++|+|+.++. .|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 99999999999999999999997654 357888887764333457799999998765
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCH
Q 007383 128 VYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL----HDPAVLLLDEPTSGLDS 203 (605)
Q Consensus 128 v~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~illLDEPtsgLD~ 203 (605)
|.. ..+++++++++. .+..++. +..||||||||++||++|+ .+|++++|||||+|||+
T Consensus 89 ------~~~--------~~~~~~~~~l~~---~~~~~~~-~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~ 150 (197)
T cd03278 89 ------YSI--------ISQGDVSEIIEA---PGKKVQR-LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred ------eeE--------EehhhHHHHHhC---CCccccc-hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCH
Confidence 110 013456666666 3445555 5999999999999999997 46699999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 204 RSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 204 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
..+..+.+.|+++++ +.|||++||+++ ..+.+|+++.+..
T Consensus 151 ~~~~~l~~~l~~~~~--~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 151 ANVERFARLLKEFSK--ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHhcc--CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 999999999999864 579999999986 3578999999974
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.9e-29 Score=270.21 Aligned_cols=200 Identities=25% Similarity=0.450 Sum_probs=174.4
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc----ccccCceEEEcCC---CCCCCCCC
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP----SSFRKLSAYVPQH---DACIPSLT 127 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~---~~l~~~lT 127 (605)
.++|+||++++||+++|-|-=|||+|-|+++|.|..++.+|+|.+||+++.. +..+..++|||.| +.++..++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 5899999999999999999999999999999999988999999999998753 3456789999987 46899999
Q ss_pred HHHHHHHHHhc-CC----CChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 007383 128 VYETFLFSARL-LV----PKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGL 201 (605)
Q Consensus 128 v~e~l~~~~~~-~~----~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgL 201 (605)
|.||+.++... +. .+..+.++.+++..+.+++.. ..+.. +..||||.+|||.|||.|..+|++|||||||.|.
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 99999988221 11 244556778899999999853 33455 4999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 202 DSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 202 D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
|..++.+|.+++++++++ |++||++|.++. |+..+||||++|++|+++..-+.+
T Consensus 433 DVGAK~eIy~li~~lA~~-G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 433 DVGAKAEIYRLIRELAAE-GKAILMISSELP-ELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred ccchHHHHHHHHHHHHHC-CCEEEEEeCChH-HHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999975 899999999997 799999999999999998754444
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1e-30 Score=241.20 Aligned_cols=196 Identities=27% Similarity=0.428 Sum_probs=171.0
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc---ccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
|-.+|+.+..||+.-++|||||||||||-.++|+.+ -+|+|.+.|+++.. .++.++-+|+.|+..-...+.|...+
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL 93 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYL 93 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhh
Confidence 678899999999999999999999999999999975 59999999999852 45667778999887655668898887
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhh-----CC--CEEEEeCCCCCCCHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLH-----DP--AVLLLDEPTSGLDSRS 205 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~-----~P--~illLDEPtsgLD~~~ 205 (605)
.+. .+.++....++++.+.++|++...+.+ .+|||||-|||-+|-..+. || ++|++|||.++||...
T Consensus 94 ~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~-~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ 167 (248)
T COG4138 94 TLH-----QPDKTRTELLNDVAGALALDDKLGRST-NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ 167 (248)
T ss_pred hhc-----CchHHHHHHHHHHHhhhcccchhhhhh-hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHH
Confidence 643 244567778899999999998887775 9999999999999977654 45 6999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 206 AFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 206 ~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
+..+-.+|.+++.. |.+|||+.||.+- ..+.+|++++|++|++...|..+|+.
T Consensus 168 ~~aLdrll~~~c~~-G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 168 QSALDRLLSALCQQ-GLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHHHHHHHhC-CcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999974 8999999999995 78999999999999999999999873
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=7.8e-29 Score=250.38 Aligned_cols=183 Identities=18% Similarity=0.264 Sum_probs=135.8
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh----------------CCCCCCcc--------EEEECCee---
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILS----------------ARTSPTNG--------TILLNSSP--- 103 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~----------------g~~~~~~G--------~I~~~g~~--- 103 (605)
+.+.++++++ |++++|+||||||||||+++|+ +++.+.+| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~ 87 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRF 87 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCcc
Confidence 3456888887 7899999999999999999998 44445556 66666632
Q ss_pred -CC--cccccCceEEEcCCCCCCC-CCCHHHHHHHHHhc-CCCChh---HHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 104 -IK--PSSFRKLSAYVPQHDACIP-SLTVYETFLFSARL-LVPKTS---QIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 104 -~~--~~~~~~~i~yv~Q~~~l~~-~lTv~e~l~~~~~~-~~~~~~---~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
.. ....++.++|++|+..+++ ..|..|...+.... ...... ..+.++. +.+++.+..+.. +..|||||
T Consensus 88 ~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~---~l~~l~~~~~~~-~~~lS~G~ 163 (243)
T cd03272 88 PIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN---SLTNMKQDEQQE-MQQLSGGQ 163 (243)
T ss_pred CCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH---Hhhhcccccccc-ccccCHHH
Confidence 11 2345677999999887776 46777766555443 211100 0122233 334455445556 48999999
Q ss_pred HHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 176 RRRVSIGLSLLH----DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 176 rqRv~ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
|||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +++||+++|++ ++.+++|++++|.
T Consensus 164 ~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 164 KSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 999999999973 5899999999999999999999999999864 67899999986 4789999999996
No 376
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.9e-29 Score=254.59 Aligned_cols=203 Identities=25% Similarity=0.382 Sum_probs=168.9
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.||++|+.|.|+. ..-=+..||++++.||++-|+|.||||||||+++|.|+++|++|+|++||
T Consensus 321 ~~lelrnvrfay~~----------------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg 384 (546)
T COG4615 321 KTLELRNVRFAYQD----------------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (546)
T ss_pred cceeeeeeeeccCc----------------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence 35999999999952 22457889999999999999999999999999999999999999999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc---ccccc-cCCCCHH
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL---ASTRL-AHNLSGG 174 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~~-~~~LSgG 174 (605)
+|+++ +++|+..+-|+.|-.+|+.+- +.......+.++..++.+.+.+. .|... +-.||.|
T Consensus 385 ~pV~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStG 452 (546)
T COG4615 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTG 452 (546)
T ss_pred ccCCCCCHHHHHHHHHHHhhhHhhhHhhh------------CCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccc
Confidence 99974 457777888888777776431 11111234567777888777653 22222 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+--+-|+.|+||+.+|||-. -+..+||++.+.+|++++.-
T Consensus 453 QkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999999999998887777788999999999965 58999999999999998754
No 377
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=8.6e-27 Score=246.47 Aligned_cols=222 Identities=24% Similarity=0.353 Sum_probs=190.3
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....|+++||+..-. .....++||||+++.||+++|.|=.|-|-+.|+.+|+|+.++.+|+|.+
T Consensus 254 g~~vL~V~~L~v~~~----------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l 317 (501)
T COG3845 254 GEVVLEVEDLSVKDR----------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL 317 (501)
T ss_pred CCeEEEEeeeEeecC----------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEE
Confidence 367799999998642 2356899999999999999999999999999999999999988899999
Q ss_pred CCeeC----Ccccc-cCceEEEcCCC---CCCCCCCHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHcCCccccc
Q 007383 100 NSSPI----KPSSF-RKLSAYVPQHD---ACIPSLTVYETFLFSARLLV-------PKTSQIDTIITVLLTELRLAHLAS 164 (605)
Q Consensus 100 ~g~~~----~~~~~-~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~ 164 (605)
+|+++ ++... +..+||||.|. .+.+.+|+.||+.+...-.+ ....+.++..+++++++++.....
T Consensus 318 ~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~ 397 (501)
T COG3845 318 NGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP 397 (501)
T ss_pred CCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC
Confidence 99996 33333 35699999985 47889999999988754211 134567788999999999974332
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 165 TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 165 ~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
....+.||||++||+-+||+|..+|++|+..+||.|||..+.+.|.+.|.+.++ .|+.|++++-|.+ |+++++|||.+
T Consensus 398 ~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dLD-Eil~lsDrIaV 475 (501)
T COG3845 398 DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDLD-EILELSDRIAV 475 (501)
T ss_pred CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhHH-HHHHhhheeee
Confidence 222589999999999999999999999999999999999999999999999986 5899999999998 79999999999
Q ss_pred EeCCeEEEecChhhH
Q 007383 245 LSKGSVVHHGTLASL 259 (605)
Q Consensus 245 l~~G~iv~~g~~~~~ 259 (605)
|++|+++...++++.
T Consensus 476 i~~Gri~~~~~~~~~ 490 (501)
T COG3845 476 IYEGRIVGIVPPEEA 490 (501)
T ss_pred eeCCceecccccccC
Confidence 999999988887764
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=3e-29 Score=248.24 Aligned_cols=176 Identities=19% Similarity=0.227 Sum_probs=137.1
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
+.+.+++++++ ++++|+||||||||||+++|. .++|.+.. ...++.+++++|+..+++.+|++|
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-KMRQKKLSDLIHNSAGHPNLDSCS 78 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-HhhhhhHHHHhcCCCCCCCCceEE
Confidence 45679999987 899999999999999999997 33454331 111256899999998899999999
Q ss_pred HHHHHHhcC--------CCChhHHHH--HHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhh----CCCEEEEeC
Q 007383 131 TFLFSARLL--------VPKTSQIDT--IITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLH----DPAVLLLDE 196 (605)
Q Consensus 131 ~l~~~~~~~--------~~~~~~~~~--~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~----~P~illLDE 196 (605)
++.+..... +...++... ...++++.+++.+..++++ ..||+|||||++||++++. +|+++++||
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-~~lS~G~~~r~~la~al~~~~~~~p~ililDE 157 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-SNLSGGEKTLSSLALVFALHHYKPTPLYVMDE 157 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 877665431 111111110 1255667778877777774 8999999999999999974 579999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 197 PTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 197 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
||+|||+.++..+.+.|+++++ +.|+|++||++ ++.+.||++++|+.
T Consensus 158 Pt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 158 IDAALDFRNVSIVANYIKERTK--NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999999999999999853 46889999996 47899999999974
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=6.5e-28 Score=245.09 Aligned_cols=176 Identities=19% Similarity=0.246 Sum_probs=139.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCe-eC-Cc----ccccCceEEEcCCC---------CCCCCCCHH
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTSPT-NGTILLNSS-PI-KP----SSFRKLSAYVPQHD---------ACIPSLTVY 129 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~~~-~G~I~~~g~-~~-~~----~~~~~~i~yv~Q~~---------~l~~~lTv~ 129 (605)
..+++|+||||||||||+++|++.+.+. .|++...|. ++ .. ...+..+++++|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4499999999999999999999999875 568888776 32 11 11234789999985 345678999
Q ss_pred HHHHHHHhc-C-CCChhHHHHHHHHHHHHcCCc--------------------ccccccccCCCCHHHHHHHHHHHHHh-
Q 007383 130 ETFLFSARL-L-VPKTSQIDTIITVLLTELRLA--------------------HLASTRLAHNLSGGERRRVSIGLSLL- 186 (605)
Q Consensus 130 e~l~~~~~~-~-~~~~~~~~~~v~~~l~~l~L~--------------------~~~~~~~~~~LSgGerqRv~ia~aL~- 186 (605)
+++...... + -..++...+++.++++.+|+. +..++. +.+||||||||++||++|+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~-~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKES-LTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccc-ccccCHHHHHHHHHHHHHHH
Confidence 888665322 1 011223457888999999986 233445 5899999999999999998
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 187 ---HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 187 ---~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
.+|+++++||||+|||+.++..+.+.|++++ + |.|||++||++ ++.+.+|+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 3 78999999995 4788999999875
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=1.7e-27 Score=234.53 Aligned_cols=167 Identities=20% Similarity=0.329 Sum_probs=130.2
Q ss_pred eeeEEEeCCeEEEEECCCCCcHHHHHHHHh----CCCCCCccEEEECCeeCCcccccCceEEEcCCC-----CCCCCCCH
Q 007383 58 NVSLTAYPSQILAIVGPSGAGKSTLLDILS----ARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHD-----ACIPSLTV 128 (605)
Q Consensus 58 ~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~----g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~-----~l~~~lTv 128 (605)
..++++.+| +++|+|||||||||||++|. |..++.+|.+..+.+.+.....+..+++++|++ .....+|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 344567788 99999999999999999994 999888887762222233334456789999987 34455688
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCC
Q 007383 129 YETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR------VSIGLSLLHDPAVLLLDEPTSGLD 202 (605)
Q Consensus 129 ~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR------v~ia~aL~~~P~illLDEPtsgLD 202 (605)
.|++.+. +.. .+++.+ ++. ++.||+||||| ++||++++.+|+++++||||++||
T Consensus 94 ~~~~~~~------~~~----~~~~~~---------~~~-~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD 153 (204)
T cd03240 94 LENVIFC------HQG----ESNWPL---------LDM-RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD 153 (204)
T ss_pred hhceeee------chH----HHHHHH---------hcC-ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccC
Confidence 8888653 111 122222 444 48999999996 789999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 203 SRSAF-NVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 203 ~~~~~-~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.++. .+.+.|++++++.+.|||++||++. ..+.+|+++.|.+
T Consensus 154 ~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 154 EENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 99999 9999999997654789999999976 4578999999964
No 381
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=1.1e-26 Score=230.24 Aligned_cols=179 Identities=23% Similarity=0.239 Sum_probs=127.3
Q ss_pred eeeeEEEe-CCeEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECC--eeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 57 KNVSLTAY-PSQILAIVGPSGAGKSTLLDILSART-SPTNGTILLNS--SPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 57 ~~vs~~i~-~Ge~~ailG~nGaGKTTLL~~l~g~~-~~~~G~I~~~g--~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
++++|... +|++++|+||||||||||+++|++.+ .+..+....+. ..+.....+..+++++|++.... ++.+..
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~ 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec
Confidence 55666543 58999999999999999999999643 33334443321 11222334456899998863211 121111
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCC
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLH----------DPAVLLLDEPTSGLD 202 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~----------~P~illLDEPtsgLD 202 (605)
+.+.++..+.+ .++..++.+..+..+ ..||||||||++||++|+. +|++++|||||+|||
T Consensus 96 -------gl~~~~~~~~~--~l~~g~l~~~l~~~~-~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD 165 (213)
T cd03279 96 -------GLDYDQFTRIV--LLPQGEFDRFLARPV-STLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLD 165 (213)
T ss_pred -------CCCHHHHHHhh--hhhhcchHHHhcCCc-cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCC
Confidence 11222221111 234444556666664 8999999999999999985 578999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 203 SRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 203 ~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+.++..+.+.|++++++ ++|||++||+++ .+...+|+++++++|.
T Consensus 166 ~~~~~~~~~~l~~~~~~-~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 166 PEALEAVATALELIRTE-NRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999999999999754 789999999997 4788899999999874
No 382
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=6.3e-27 Score=248.46 Aligned_cols=207 Identities=25% Similarity=0.313 Sum_probs=166.6
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
+...+.++|+++.|+ ++-.++++++|-++.++-+|++||||+|||||||++.|.+.|+.|.|.-
T Consensus 386 p~pvi~~~nv~F~y~----------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~ 449 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYS----------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSR 449 (614)
T ss_pred CCCeEEEeccccCCC----------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccc
Confidence 345689999999884 2237999999999999999999999999999999999999999999854
Q ss_pred CCeeCCcccccCceEEEcCC--CCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 100 NSSPIKPSSFRKLSAYVPQH--DACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~--~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
.-. .++++..|+ +.+.-..++.|++.=. ++ +....+.+..++..+||+...+....++||+|||+
T Consensus 450 ~~H--------~~~~~y~Qh~~e~ldl~~s~le~~~~~---~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~ 516 (614)
T KOG0927|consen 450 HSH--------NKLPRYNQHLAEQLDLDKSSLEFMMPK---FP--DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRR 516 (614)
T ss_pred ccc--------ccchhhhhhhHhhcCcchhHHHHHHHh---cc--ccchHHHHHHHHHHhCCCccccccchhhcccccch
Confidence 322 224444554 3344456777766522 22 13456778899999999865555446999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE-EEecCh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV-VHHGTL 256 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i-v~~g~~ 256 (605)
||.+|+.++..|.+|+|||||+|||..+...+-+.|.++ .| +||.++||... |.+.++++.+..+|.+ .+.|+.
T Consensus 517 rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~G-gvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 517 RVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PG-GVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred hHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CC-ceeeeechhhH-HHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999999999999987 24 89999999995 8999999999988765 466765
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
..-.
T Consensus 592 ~~yk 595 (614)
T KOG0927|consen 592 EIYK 595 (614)
T ss_pred HHHH
Confidence 5433
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=7.9e-26 Score=248.15 Aligned_cols=193 Identities=28% Similarity=0.340 Sum_probs=159.9
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...++++|++..-+ ..+..|++.++.+++||-+.|.||||||||||+|+|+|+-|.-+|+|..-
T Consensus 390 ~~~i~~~nl~l~~p----------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P 453 (604)
T COG4178 390 DHGITLENLSLRTP----------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP 453 (604)
T ss_pred cceeEEeeeeEECC----------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence 46799999999764 34589999999999999999999999999999999999999989988653
Q ss_pred CeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccc-----cCCCCHHH
Q 007383 101 SSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRL-----AHNLSGGE 175 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~~LSgGe 175 (605)
-...+-|+||.|.+... |.+|.+.|..... +-.++.+.++|.++||.+..++.- -+.||+||
T Consensus 454 --------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~----~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GE 520 (604)
T COG4178 454 --------ADSALLFLPQRPYLPQG-TLREALCYPNAAP----DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGE 520 (604)
T ss_pred --------CCCceEEecCCCCCCCc-cHHHHHhCCCCCC----CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhH
Confidence 11346899999987665 9999987653221 134566788999999987653321 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
||||++||.|+++|++++|||-|++||+.++..+.+++++-. .+.|||-+.|.+. +..+.++.+-+.
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeec
Confidence 999999999999999999999999999999999999999853 4789999999986 567777766654
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=3.1e-25 Score=268.20 Aligned_cols=201 Identities=23% Similarity=0.356 Sum_probs=151.5
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHH---------HHhCCCCCC---c-cE----EEECCeeCCc--c--------
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLD---------ILSARTSPT---N-GT----ILLNSSPIKP--S-------- 107 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~---------~l~g~~~~~---~-G~----I~~~g~~~~~--~-------- 107 (605)
.|+|+|+++++||+++|.|+||||||||++ .|.|...+. + +. |.++..++.. .
T Consensus 610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g 689 (1809)
T PRK00635 610 NLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIK 689 (1809)
T ss_pred CccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehh
Confidence 699999999999999999999999999999 556653221 1 11 2233222210 0
Q ss_pred ---ccc---------C-----ceEEEcCC--------------------------------------CCCCCCCCHHHHH
Q 007383 108 ---SFR---------K-----LSAYVPQH--------------------------------------DACIPSLTVYETF 132 (605)
Q Consensus 108 ---~~~---------~-----~i~yv~Q~--------------------------------------~~l~~~lTv~e~l 132 (605)
..| + ...|.++. ...+...||.|+|
T Consensus 690 ~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL 769 (1809)
T PRK00635 690 AFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADIL 769 (1809)
T ss_pred hhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHH
Confidence 011 0 01112221 0245678999999
Q ss_pred HHHHhc---CCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHH
Q 007383 133 LFSARL---LVPKTSQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLL---HDPAVLLLDEPTSGLDSRS 205 (605)
Q Consensus 133 ~~~~~~---~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~---~~P~illLDEPtsgLD~~~ 205 (605)
.++..- +....++..+++ ++++.+||.+. .++. +.+||||||||++||++|+ .+|++++|||||+|||+.+
T Consensus 770 ~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~ 847 (1809)
T PRK00635 770 EMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD 847 (1809)
T ss_pred HcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-cccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH
Confidence 987652 122234455566 58899999876 5666 4999999999999999998 6999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe------CCeEEEecChhhHH
Q 007383 206 AFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS------KGSVVHHGTLASLE 260 (605)
Q Consensus 206 ~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~------~G~iv~~g~~~~~~ 260 (605)
...+++.|++++++ |.|||+++|+++. + +.+|++++|. +|+++..|+++++.
T Consensus 848 ~~~Ll~lL~~L~~~-G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 848 IKALIYVLQSLTHQ-GHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 99999999999764 8899999999973 5 8999999996 78999999998874
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=3.4e-25 Score=258.03 Aligned_cols=125 Identities=28% Similarity=0.385 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCC
Q 007383 126 LTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDP---AVLLLDEPTSGL 201 (605)
Q Consensus 126 lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqRv~ia~aL~~~P---~illLDEPtsgL 201 (605)
+||.|++.|...+. + ..+..+.++.+||.. ..++. +..||||||||+.||++|+.+| ++++|||||+||
T Consensus 792 ltv~E~l~~f~~~~-----~-i~~~l~~L~~vgL~~l~l~~~-~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGL 864 (943)
T PRK00349 792 MTVEEALEFFEAIP-----K-IARKLQTLVDVGLGYIKLGQP-ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864 (943)
T ss_pred CcHHHHHHHHHhch-----h-hhHHHHHHHHCCCCcccccCC-cccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 78999998875541 1 123467899999986 35666 4899999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 202 DSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 202 D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
|+.++..+++.|+++.+ .|.|||+++|+++. + +.+|+++.| ++|++++.|+++++.
T Consensus 865 D~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 865 HFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999975 48899999999963 4 679999999 789999999998874
No 386
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.93 E-value=7.3e-25 Score=228.31 Aligned_cols=190 Identities=23% Similarity=0.338 Sum_probs=156.6
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...++|.++++++. ---|+-=.+++..||+++++||||-||||+.++|+|.++|++|+
T Consensus 340 ~~lv~y~~~~k~~g------------------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---- 397 (591)
T COG1245 340 DTLVEYPDLKKTYG------------------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---- 397 (591)
T ss_pred ceeeecchheeecC------------------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----
Confidence 55677888877762 22466667788899999999999999999999999999999997
Q ss_pred CeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 101 SSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
..+ -.++|-||--.--...||++.|.-...- .. ......++++-|+|++..++.+ .+|||||.|||
T Consensus 398 ~~~-------~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~-----~s~~~~ei~~pl~l~~i~e~~v-~~LSGGELQRv 464 (591)
T COG1245 398 EED-------LKVSYKPQYISPDYDGTVEDLLRSAIRSAFG-----SSYFKTEIVKPLNLEDLLERPV-DELSGGELQRV 464 (591)
T ss_pred Ccc-------ceEeecceeecCCCCCcHHHHHHHhhhhhcc-----cchhHHhhcCccchHHHHhccc-ccCCchhHHHH
Confidence 111 2478888865444567999988754332 11 1223456788899999999886 99999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+||.+|.+++++++||||++.||...+..+-+.+++...+.++|.+++.||.-. +--++||+++..
T Consensus 465 aIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 465 AIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999999999999999999999999999999999889999999999874 566789998875
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=2.2e-25 Score=211.46 Aligned_cols=223 Identities=20% Similarity=0.262 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC----CccEEEE
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP----TNGTILL 99 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~----~~G~I~~ 99 (605)
|.++|++..+.. ..+...+++++|+++.+||+-+++|+||||||-.-|+|+|..+. +.-+..+
T Consensus 4 LDIrnL~IE~~T-------------sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf 70 (330)
T COG4170 4 LDIRNLTIEFKT-------------SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRF 70 (330)
T ss_pred ccccceEEEEec-------------CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhccc
Confidence 667888887752 33667899999999999999999999999999999999999874 4556667
Q ss_pred CCeeC---Cccccc----CceEEEcCCCC--CCCCCCHHHHHHHHH--hcCC-C---ChhHHHHHHHHHHHHcCCccccc
Q 007383 100 NSSPI---KPSSFR----KLSAYVPQHDA--CIPSLTVYETFLFSA--RLLV-P---KTSQIDTIITVLLTELRLAHLAS 164 (605)
Q Consensus 100 ~g~~~---~~~~~~----~~i~yv~Q~~~--l~~~lTv~e~l~~~~--~~~~-~---~~~~~~~~v~~~l~~l~L~~~~~ 164 (605)
++.++ ++++.| +.+++++|++. +.|.-+|...|.-.. +.+. + .-.-++++.-+++..+|+.+..|
T Consensus 71 ~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD 150 (330)
T COG4170 71 DDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred ccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH
Confidence 77654 333333 45789999985 566555554443221 0011 1 00123556778999999976543
Q ss_pred c--cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeE
Q 007383 165 T--RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRI 242 (605)
Q Consensus 165 ~--~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v 242 (605)
- .++.+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++..+|.++.+.+|.||+.++||... +.+-||++
T Consensus 151 IM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i 229 (330)
T COG4170 151 IMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKI 229 (330)
T ss_pred HHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhhe
Confidence 2 22689999999999999999999999999999999999999999999999999999999999999985 89999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 007383 243 LLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 243 ~~l~~G~iv~~g~~~~~~ 260 (605)
-+|.=|+-++.++.+++.
T Consensus 230 ~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 230 NVLYCGQTVESAPSEELV 247 (330)
T ss_pred EEEEecccccccchhHHh
Confidence 999999999999988874
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=1.5e-24 Score=212.55 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=124.3
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC----CcccccCceEEEcCCCCCCCCCCHHHH
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI----KPSSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~----~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
++++++++.+| +.+|+||||||||||+.+|......... ....|... ....-...+..++|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~------ 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN------ 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC------
Confidence 47788888888 8899999999999999999743322111 00112211 111123447788887665541
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHH
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSL----LHDPAVLLLDEPTSGLDSRSAF 207 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL----~~~P~illLDEPtsgLD~~~~~ 207 (605)
......++.++++++. .+..+++ +++||+|||||++||+++ +.+|++++|||||+|||+.++.
T Consensus 84 ---------~~~~~~~~~~~~~l~~---~~~~~~~-~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~ 150 (198)
T cd03276 84 ---------PLCVLSQDMARSFLTS---NKAAVRD-VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRK 150 (198)
T ss_pred ---------cCCHHHHHHHHHHhcc---ccccCCc-ccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHH
Confidence 0111224556677766 4555666 499999999999999999 5899999999999999999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 208 NVMQTLKSISAS--RHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 208 ~i~~~L~~l~~~--~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
.+.+.|++++++ ++.|||+++|+++ ++.++ |+|.+|..++
T Consensus 151 ~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 151 ISTDLLVKEAKKQPGRQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCccc-ccccc-cceeEEEecC
Confidence 999999998654 3468999999998 46664 9999998754
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.3e-23 Score=244.37 Aligned_cols=125 Identities=27% Similarity=0.393 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhh---CCCEEEEeCCCCC
Q 007383 125 SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLH---DPAVLLLDEPTSG 200 (605)
Q Consensus 125 ~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~---~P~illLDEPtsg 200 (605)
.+||.|.+.|...+.. ..+..++++.+||... .++. ..+|||||+||+.||++|+. +|++++|||||+|
T Consensus 789 ~~tv~e~~~f~~~~~~------i~~~l~~L~~~gL~~l~l~~~-~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsg 861 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS------ISRKLQTLCDVGLGYIKLGQP-ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTG 861 (924)
T ss_pred CCcHHHHHHHHHhccc------hhHHHHHHHHcCCCchhhcCc-cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCC
Confidence 4677787777654311 1234578899999763 5666 49999999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhH
Q 007383 201 LDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASL 259 (605)
Q Consensus 201 LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~ 259 (605)
||+.++..+.+.|+++.++ |.|||+++|+++. + +.+|+++.| ++|++++.|+++++
T Consensus 862 LD~~~~~~L~~~L~~l~~~-G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 862 LHFDDIKKLLEVLQRLVDQ-GNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999754 8899999999973 4 679999999 79999999998764
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=1.7e-24 Score=230.01 Aligned_cols=209 Identities=23% Similarity=0.347 Sum_probs=147.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE--EEC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI--LLN 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I--~~~ 100 (605)
.+.+.|+|.++ .++.+++|+++++.+|+-+||+|+|||||||+|++|+|...|..-++ +.-
T Consensus 75 dvk~~sls~s~-----------------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l 137 (614)
T KOG0927|consen 75 DVKIESLSLSF-----------------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL 137 (614)
T ss_pred cceeeeeeecc-----------------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh
Confidence 47777888777 46789999999999999999999999999999999999998843333 222
Q ss_pred CeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHh--------------------cCCCChhHHHHHHHHHHHHcCCc
Q 007383 101 SSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSAR--------------------LLVPKTSQIDTIITVLLTELRLA 160 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~--------------------~~~~~~~~~~~~v~~~l~~l~L~ 160 (605)
.+++.+... +.+-++.+ +.-..+..++.-+. +.....+..+.++.+++..+|-.
T Consensus 138 s~e~~ps~~-~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~ 211 (614)
T KOG0927|consen 138 SREIEPSEK-QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFL 211 (614)
T ss_pred cccCCCchH-HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCC
Confidence 222211110 00101110 00011111111100 00012233455666777777753
Q ss_pred -ccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcC
Q 007383 161 -HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTI 239 (605)
Q Consensus 161 -~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 239 (605)
+..++.+ .++|||+|+|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.. ..++++++|.-+. +-..|
T Consensus 212 ~~m~~k~~-~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~~lVi~sh~QDf-ln~vC 286 (614)
T KOG0927|consen 212 SEMQDKKV-KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RIILVIVSHSQDF-LNGVC 286 (614)
T ss_pred HhHHHHHh-hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---CceEEEEecchhh-hhhHh
Confidence 4556664 9999999999999999999999999999999999999999999998763 1289999998775 78899
Q ss_pred CeEEEEeCCe-EEEecChhhH
Q 007383 240 DRILLLSKGS-VVHHGTLASL 259 (605)
Q Consensus 240 d~v~~l~~G~-iv~~g~~~~~ 259 (605)
.+|+-|.+++ +.|.|+.++.
T Consensus 287 T~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 287 TNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred hhhheecccceeeecCCHHHH
Confidence 9999999998 6677887764
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.2e-24 Score=218.66 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=121.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee--CCc--------ccccCceEEEcCCCCC-CCCCCHHHHH
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP--IKP--------SSFRKLSAYVPQHDAC-IPSLTVYETF 132 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~--~~~--------~~~~~~i~yv~Q~~~l-~~~lTv~e~l 132 (605)
.++ +++|+|||||||||||++|++...+..|++..++.. +.. ....-.+.|..|++.. .-.-++.+..
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 344 999999999999999999999988777777654321 110 1122234454454321 1111111110
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccc----------------------cccccCCCCHHHHHHHHHHHHHhhC--
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLA----------------------STRLAHNLSGGERRRVSIGLSLLHD-- 188 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~----------------------~~~~~~~LSgGerqRv~ia~aL~~~-- 188 (605)
. ......+....+.++++++.+|+.... +++ +.+||||||||++||++++.+
T Consensus 100 ~---~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~-~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 S---SYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRD-MDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred e---EEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhh-HHHcCHHHHHHHHHHHHHHHhcc
Confidence 0 000011112234567888888885321 122 378999999999999999875
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 189 --PAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 189 --P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
|+++++||||+|||+..+..+.+.|++++++ |.+||++||+++ +.+.+|++++|.+
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 8999999999999999999999999999754 889999999964 6789999999974
No 392
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.6e-23 Score=216.53 Aligned_cols=205 Identities=26% Similarity=0.329 Sum_probs=163.3
Q ss_pred CCCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007383 18 PLKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97 (605)
Q Consensus 18 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I 97 (605)
+.+...|-+.||++.|+ +.++.+++++|-|.-..-+||+||||.||||||++|.|.+.|..|+.
T Consensus 581 ~L~PPvLGlH~VtFgy~----------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~ 644 (807)
T KOG0066|consen 581 KLNPPVLGLHDVTFGYP----------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL 644 (807)
T ss_pred CCCCCeeecccccccCC----------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchh
Confidence 44556788999999995 56789999999999999999999999999999999999999999987
Q ss_pred EECCeeCCcccccCceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 98 LLNSSPIKPSSFRKLSAYVPQHD--ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 98 ~~~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
.-| .|-+||+.-|+. .+-..-|..|.|.-. +..+. +.....|-.+||...+++.....|||||
T Consensus 645 RKn--------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~---FNlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQ 709 (807)
T KOG0066|consen 645 RKN--------HRLRIGWFDQHANEALNGEETPVEYLQRK---FNLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQ 709 (807)
T ss_pred hcc--------ceeeeechhhhhHHhhccccCHHHHHHHh---cCCCh----HHHHHHhhhhhhhhccceEeeeecCCcc
Confidence 533 234589988864 455666777776533 22232 2345677889998888887679999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE-EEec
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV-VHHG 254 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i-v~~g 254 (605)
|-||++|.--+..|+||||||||++||..+...+.+.|++.. | .||+++||-+. |.+.--.++++.+..| --.|
T Consensus 710 KaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---G-gVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdG 784 (807)
T KOG0066|consen 710 KARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---G-GVIMVSHDERL-IVETDCNLWVVENQGIDEIDG 784 (807)
T ss_pred hHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---C-cEEEEecccce-eeecCceEEEEccCChhhccc
Confidence 999999999999999999999999999999999999999872 3 79999999885 6666567777765433 2234
Q ss_pred Chhh
Q 007383 255 TLAS 258 (605)
Q Consensus 255 ~~~~ 258 (605)
+.++
T Consensus 785 dFeD 788 (807)
T KOG0066|consen 785 DFED 788 (807)
T ss_pred cHHH
Confidence 4443
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.90 E-value=7.2e-23 Score=193.88 Aligned_cols=215 Identities=22% Similarity=0.280 Sum_probs=170.0
Q ss_pred CCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007383 19 LKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL 98 (605)
Q Consensus 19 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~ 98 (605)
.....++++++.|.|+ ...+++-|+|++++.|.-..++|.||||||||||+|+|..-...|.|.
T Consensus 9 ~~~~aievsgl~f~y~----------------~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~ 72 (291)
T KOG2355|consen 9 VSDFAIEVSGLQFKYK----------------VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQ 72 (291)
T ss_pred cccceEEEeccEEecc----------------cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEE
Confidence 4456799999999995 334799999999999999999999999999999999999877779999
Q ss_pred ECCeeCCc--------------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccc
Q 007383 99 LNSSPIKP--------------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAS 164 (605)
Q Consensus 99 ~~g~~~~~--------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~ 164 (605)
++|.+.-. .+|.+.++.-- +-.+...+++.+ +.|+..- . .-++-+++++.++++-.
T Consensus 73 VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mifgV~g---~---dp~Rre~LI~iLDIdl~-- 142 (291)
T KOG2355|consen 73 VLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIFGVGG---D---DPERREKLIDILDIDLR-- 142 (291)
T ss_pred EcCcCccccccccccCceeEecccccccccccc-cccccccccHHH-HHhhccC---C---ChhHhhhhhhheeccce--
Confidence 99976411 13444444333 222333566644 4444321 1 12455667777777532
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 165 TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 165 ~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
.+. +.+|-||||||.|+..|++.=++|+|||-|-.||..++..+++.+++-++++|.||+..||-.+- +..-..+++.
T Consensus 143 WRm-HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~y 220 (291)
T KOG2355|consen 143 WRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVY 220 (291)
T ss_pred EEE-eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEE
Confidence 343 78999999999999999999999999999999999999999999999999999999999999884 7888999999
Q ss_pred EeCCeEEEecChhhHHH
Q 007383 245 LSKGSVVHHGTLASLET 261 (605)
Q Consensus 245 l~~G~iv~~g~~~~~~~ 261 (605)
|++|+++-.-+.+++.+
T Consensus 221 i~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 221 IKSGKLVDNLKYQKIKE 237 (291)
T ss_pred ecCCeeeeccccchhhh
Confidence 99999987655555543
No 394
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.90 E-value=7.9e-23 Score=218.84 Aligned_cols=200 Identities=24% Similarity=0.309 Sum_probs=160.6
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...+++++|+.+-|. .+..+++|+|++|+.|+-+.|.||||||||+|+++++|+-+..+|++.--
T Consensus 431 Dn~i~~e~v~l~tPt---------------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~ 495 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT---------------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKP 495 (659)
T ss_pred cceEEeeeeeecCCC---------------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEec
Confidence 367999999997641 24568899999999999999999999999999999999999999999754
Q ss_pred CeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCChhHHHHHHHHHHHHcCCcccccc------cc----cC
Q 007383 101 SSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKTSQIDTIITVLLTELRLAHLAST------RL----AH 169 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~------~~----~~ 169 (605)
.+.-. +.+-||||.|..--. |.||.+.|...- .+.++...++++.+.|+.++|.|..++ .+ -.
T Consensus 496 ~~~~~-----~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~d 569 (659)
T KOG0060|consen 496 TDGGP-----KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMD 569 (659)
T ss_pred ccCCC-----CceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHh
Confidence 33211 457899999986544 999998887443 222222345667777777777654321 11 25
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
.||+||+||++.||-+.++|++-+|||-||++|......+.+.+++. |.|.|-+.|..+ +.++-|.++-|+.
T Consensus 570 vLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~----giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 570 VLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM----GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred hcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc----CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 79999999999999999999999999999999999999999888763 799999999986 5788888888874
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.4e-23 Score=219.06 Aligned_cols=228 Identities=19% Similarity=0.227 Sum_probs=158.6
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
.-.|...+++..| +.+.+|++-++++..|.-+||+|+||+|||||||+|+. |.|..-
T Consensus 78 ~~Di~~~~fdLa~-----------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f 134 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF 134 (582)
T ss_pred ccceeeeeeeeee-----------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCcc
Confidence 4457788888877 57889999999999999999999999999999999997 433222
Q ss_pred CeeCCcccccCceEEEcCC-CCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 101 SSPIKPSSFRKLSAYVPQH-DACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
+. +++.+ --+++-. +.+....++.+-+.--..+.. ..+.++...++|..+|.++....+..++||||-|-|+
T Consensus 135 --~v-eqE~~--g~~t~~~~~~l~~D~~~~dfl~~e~~l~~--~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrl 207 (582)
T KOG0062|consen 135 --HV-EQEVR--GDDTEALQSVLESDTERLDFLAEEKELLA--GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRL 207 (582)
T ss_pred --Cc-hhhee--ccchHHHhhhhhccHHHHHHHHhhhhhhc--cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHH
Confidence 21 11111 1233322 223333333332221111110 1123444555889999986654444699999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE-EEecChhh
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV-VHHGTLAS 258 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i-v~~g~~~~ 258 (605)
++||||..+|+||||||||+.||..+..=+.+.|+.+ +.|+|+++||-++ +-..|..|+-+++-++ .|.|+.++
T Consensus 208 aLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~F-Ln~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 208 ALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNF-LNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHH-HHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 9999999999999999999999999999999999876 3699999999775 6678888888887666 57898877
Q ss_pred HHH----HHHhCCCCCCCCCChHHHHHHH
Q 007383 259 LET----FLLSSGFSVPPQLNALEYTMEI 283 (605)
Q Consensus 259 ~~~----~~~~~g~~~p~~~n~ad~~~~~ 283 (605)
..+ ...+.-++.|...+...++...
T Consensus 283 Fvk~k~E~~~n~qrefe~q~~~R~h~q~f 311 (582)
T KOG0062|consen 283 FVKTKPEAKKNQQREFEVQMKYRAHLQVF 311 (582)
T ss_pred HHHhhHHhhhhhhhhcchHHHHHHHHHHH
Confidence 532 2223334445444444444433
No 396
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.88 E-value=5.6e-24 Score=207.96 Aligned_cols=208 Identities=27% Similarity=0.462 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHhcChhHH-HHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHhhh
Q 007383 329 QEVCTLYNRFWKIIYRTRQLL-LTNTLEALIVGLVLGTIFINVGYDKQGIENRFGLFAFTLTFLLSSTT-ETLPIFINER 406 (605)
Q Consensus 329 ~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~-~~i~~~~~er 406 (605)
+|++.+++|+++..+|||... ...++..++.++++|.+|.+++++.++. ++.|++++.+...++... .....+..||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 9999999999999999999998555555 678877777776664443 3347788999
Q ss_pred hHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007383 407 PILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLSSLAPN 486 (605)
Q Consensus 407 ~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~ 486 (605)
..+.||+.++.|++.+|.+|+.+.+++..++.++++..+.|++.|++.+ +++.+++.+++..+++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999887 77888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHh
Q 007383 487 YIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEY 539 (605)
Q Consensus 487 ~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef 539 (605)
...+..+.+.+..+++++||.++|.+.+|+|++|+.|+||++|+.|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999876
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7.4e-22 Score=209.01 Aligned_cols=207 Identities=28% Similarity=0.365 Sum_probs=165.3
Q ss_pred CCcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007383 19 LKTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL 98 (605)
Q Consensus 19 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~ 98 (605)
.+...+++.+|++.|+. ... +++.+++..++.-+-.+++|+||+||||++|++.|-..|..|.+.
T Consensus 358 ~~~p~l~i~~V~f~y~p--------------~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~ 422 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTP--------------SEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVG 422 (582)
T ss_pred CCCCeeEEEeeeccCCC--------------cch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceee
Confidence 35567999999988741 112 799999999999999999999999999999999999999999887
Q ss_pred ECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHH
Q 007383 99 LNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERR 177 (605)
Q Consensus 99 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerq 177 (605)
+++ |.+++|-.|...=+-.+.|-+ +.+..+.++.. .++.++.-+..+||+. .+... ..+||||||-
T Consensus 423 ~~~--------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~---~~ee~r~hl~~~Gl~g~la~~s-i~~LSGGQKs 489 (582)
T KOG0062|consen 423 RHP--------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGK---TEEEIRRHLGSFGLSGELALQS-IASLSGGQKS 489 (582)
T ss_pred ecc--------cceecchhHhhhhHHHHHhHH-HHHHHHhCCCC---CHHHHHHHHHhcCCCchhhhcc-ccccCCcchh
Confidence 653 456889999754333444443 33333444321 4556778889999975 34444 4899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE-EecCh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV-HHGTL 256 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~~ 256 (605)
||++|.....+|.+|+|||||+.||-.+-..+.+.|+.+. | .||++|||.+. +..+|+.+++..+|++. ..|..
T Consensus 490 rvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---G-GVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 490 RVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---G-GVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---C-cEEEEECcHHH-HhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999999999999999999999999872 3 69999999886 88999999999999986 34554
Q ss_pred hh
Q 007383 257 AS 258 (605)
Q Consensus 257 ~~ 258 (605)
.+
T Consensus 565 ~~ 566 (582)
T KOG0062|consen 565 DK 566 (582)
T ss_pred HH
Confidence 34
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=2.5e-21 Score=191.76 Aligned_cols=169 Identities=20% Similarity=0.282 Sum_probs=111.2
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc---------EEEECCeeC-----------CcccccCceEE
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG---------TILLNSSPI-----------KPSSFRKLSAY 115 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G---------~I~~~g~~~-----------~~~~~~~~i~y 115 (605)
++++.+.+.+| +.+|+|||||||||||++|.-.+-.... +..-.|..- ....++..+.+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 36667777776 8899999999999999998755421110 011111100 00112222335
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCC-cccccccccCCCCHHHHHHHHHHHHH----hhCC
Q 007383 116 VPQHDA-CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRL-AHLASTRLAHNLSGGERRRVSIGLSL----LHDP 189 (605)
Q Consensus 116 v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~~~~~LSgGerqRv~ia~aL----~~~P 189 (605)
++|+.. -+..+++.|.+ ..++- .+..+.. +.+||||||||+.++.+| +.+|
T Consensus 93 ~~q~~~~~~~~~~~~e~l----------------------~~~~~~~~~~~~~-~~~LS~G~~q~~~i~~~la~~~~~~p 149 (213)
T cd03277 93 LPQDRVGEFAKLSPIELL----------------------VKFREGEQLQELD-PHHQSGGERSVSTMLYLLSLQELTRC 149 (213)
T ss_pred EchHHHHHHHhCChHhHh----------------------eeeecCCCccccc-hhhccccHHHHHHHHHHHHHHhccCC
Confidence 555432 23344444333 11111 1122233 589999999998877554 5899
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEeCCCChHHHhcCC--eEEEEeCCe
Q 007383 190 AVLLLDEPTSGLDSRSAFNVMQTLKSISASRH-RTVILSIHQPSFKILSTID--RILLLSKGS 249 (605)
Q Consensus 190 ~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g-~tii~~~H~~~~~i~~~~d--~v~~l~~G~ 249 (605)
+++++||||+|||+.++..+.+.|++++++.| .|+|++||++.. +.+.+| ++++|++|+
T Consensus 150 ~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 150 PFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence 99999999999999999999999999976524 589999999864 667776 788888886
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.85 E-value=1.1e-21 Score=192.57 Aligned_cols=147 Identities=17% Similarity=0.165 Sum_probs=111.0
Q ss_pred eeeeeeEEEeCCe-EEEEECCCCCcHHHHHHHHh--------CCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCC
Q 007383 55 ILKNVSLTAYPSQ-ILAIVGPSGAGKSTLLDILS--------ARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPS 125 (605)
Q Consensus 55 iL~~vs~~i~~Ge-~~ailG~nGaGKTTLL~~l~--------g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 125 (605)
-.-++|+++.+|+ +++|.|||||||||||++|+ |..-|.... ..++|+.|.-.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~--------------~~~~~~~~~~~---- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG--------------SSLPVFENIFA---- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc--------------ccCcCccEEEE----
Confidence 3458999999994 89999999999999999998 443332110 01233333211
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007383 126 LTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRS 205 (605)
Q Consensus 126 lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~ 205 (605)
.++..+..+.. ...+|+||||++.++++ +.+|+++++|||++|||+..
T Consensus 78 ------------------------------~lg~~~~l~~~-~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~ 125 (200)
T cd03280 78 ------------------------------DIGDEQSIEQS-LSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVE 125 (200)
T ss_pred ------------------------------ecCchhhhhcC-cchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHH
Confidence 11111112233 37899999999999987 58999999999999999999
Q ss_pred HHHHH-HHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 206 AFNVM-QTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 206 ~~~i~-~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
...+. ..++++++ .+.++|++||+. ++.+++|++..|++|++.+++
T Consensus 126 ~~~i~~~~l~~l~~-~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 126 GAALAIAILEELLE-RGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99996 46788765 478999999984 578999999999999998874
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=1.8e-21 Score=203.19 Aligned_cols=170 Identities=28% Similarity=0.416 Sum_probs=130.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc---cc---------ccC------ceEEEcCC----C
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SS---------FRK------LSAYVPQH----D 120 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~---~~---------~~~------~i~yv~Q~----~ 120 (605)
.++|+++||+||||-||||-+|+|+|.+.|.=|+- ++.|-.. +. +++ ++..-+|- |
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 57899999999999999999999999999976643 3321100 00 000 11222221 2
Q ss_pred CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 007383 121 ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSG 200 (605)
Q Consensus 121 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsg 200 (605)
..+. -||.|-|.-. +.+-+.+++++.++|++..|+.+ ++|||||.||++||.+++++.+++++|||||-
T Consensus 175 k~~K-G~v~elLk~~---------de~g~~devve~l~L~nvl~r~v-~~LSGGELQr~aIaa~l~rdADvY~FDEpsSy 243 (591)
T COG1245 175 KVVK-GKVGELLKKV---------DERGKFDEVVERLGLENVLDRDV-SELSGGELQRVAIAAALLRDADVYFFDEPSSY 243 (591)
T ss_pred HHhc-chHHHHHHhh---------hhcCcHHHHHHHhcchhhhhhhh-hhcCchHHHHHHHHHHHhccCCEEEEcCCccc
Confidence 2222 2666655421 12235788999999999999996 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 201 LDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 201 LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
||...+.+..+.++++++. +++||++.||+.. +--++|-|.++..
T Consensus 244 LDi~qRl~~ar~Irel~~~-~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 244 LDIRQRLNAARVIRELAED-GKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred ccHHHHHHHHHHHHHHhcc-CCeEEEEechHHH-HHHhhheeEEEec
Confidence 9999999999999999875 7899999999973 4457898888863
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.84 E-value=2.1e-20 Score=193.09 Aligned_cols=210 Identities=25% Similarity=0.361 Sum_probs=155.5
Q ss_pred EEEEeEEEEEecCCCC---cc------ccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC----
Q 007383 24 LTGSSISYIKSNNSII---PS------FIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART---- 90 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~---~~------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~---- 90 (605)
+.++++++.+...-.. .. ..++-........+|+|+|++++||++++|+|+|||||||||++|+|..
T Consensus 358 ~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ 437 (593)
T COG2401 358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG 437 (593)
T ss_pred cccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhccc
Confidence 6677888776432111 00 1122233345677999999999999999999999999999999999873
Q ss_pred ----CCCccEEEECCeeCCcccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-c
Q 007383 91 ----SPTNGTILLNSSPIKPSSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-S 164 (605)
Q Consensus 91 ----~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 164 (605)
+|++|.|.+--.. ..+.+|.+. .-+..-|+.|++.-- . -.-....++++..|+.+.. -
T Consensus 438 ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s~---t-----GD~~~AveILnraGlsDAvly 501 (593)
T COG2401 438 EEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRSK---T-----GDLNAAVEILNRAGLSDAVLY 501 (593)
T ss_pred ccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhhc---c-----CchhHHHHHHHhhccchhhhh
Confidence 4678887653211 234555542 223456777766411 1 1123356788999996532 2
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc-CCeEE
Q 007383 165 TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST-IDRIL 243 (605)
Q Consensus 165 ~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~d~v~ 243 (605)
+...++||-|||.|+.||.++...|.+++.||=.+.||+.++..+.+-|.+++.+.|.|++++||.|+. +-.+ -|+++
T Consensus 502 Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li 580 (593)
T COG2401 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLI 580 (593)
T ss_pred hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeE
Confidence 222589999999999999999999999999999999999999999999999998889999999999974 5566 69999
Q ss_pred EEeCCeE
Q 007383 244 LLSKGSV 250 (605)
Q Consensus 244 ~l~~G~i 250 (605)
++.=|+.
T Consensus 581 ~vgYg~v 587 (593)
T COG2401 581 LVGYGKV 587 (593)
T ss_pred Eeecccc
Confidence 8876654
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=1.3e-19 Score=174.69 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 171 LSGGERRRVSIGLSLL----HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 171 LSgGerqRv~ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
||||||||++||++++ .+|+++++|||++|||+..+..+.+.|++++++ |.|+|+++|+++ ..+.+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~--~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKE--MFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHhhCCeEEEEE
Confidence 9999999999999996 699999999999999999999999999999754 789999999985 467899999997
Q ss_pred C
Q 007383 247 K 247 (605)
Q Consensus 247 ~ 247 (605)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.81 E-value=3.8e-20 Score=181.49 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=108.6
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
++.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+++.+|+.|+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS------SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence 346788887765 79999999999999999999988543 12345444221 366777788999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVM- 210 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~- 210 (605)
+.++... ...+ .+++.++++.+++ .+|+++++|||++|+|+..+..+.
T Consensus 80 l~~~~s~---~~~e-~~~~~~iL~~~~~---------------------------~~p~llllDEp~~glD~~~~~~l~~ 128 (199)
T cd03283 80 LRDGISY---FYAE-LRRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGTNSRERQAASA 128 (199)
T ss_pred cccccCh---HHHH-HHHHHHHHHhccC---------------------------CCCeEEEEecccCCCCHHHHHHHHH
Confidence 9875422 1122 2456677766652 699999999999999999998875
Q ss_pred HHHHHHHhcCCcEEEEEeCCCChHHHhc--CCeEEEE
Q 007383 211 QTLKSISASRHRTVILSIHQPSFKILST--IDRILLL 245 (605)
Q Consensus 211 ~~L~~l~~~~g~tii~~~H~~~~~i~~~--~d~v~~l 245 (605)
.+++++++ .|.|+|++||+++. +..+ .+++-.+
T Consensus 129 ~ll~~l~~-~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 129 AVLKFLKN-KNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHH-CCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 47888875 48899999999873 4443 3455444
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=6.4e-20 Score=182.85 Aligned_cols=154 Identities=20% Similarity=0.243 Sum_probs=117.2
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceE-EEcCCCCCCCCCCHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSA-YVPQHDACIPSLTVYE 130 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~e 130 (605)
.+.+.+|++++..+|++++|.||||+||||||+.++-. .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~------------------~~la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI------------------VLMAQIGCFVPCDSADIP------ 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH------------------HHHHHhCCCcCcccEEEe------
Confidence 45789999999999999999999999999999999811 1112233 5555432221
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSL--LHDPAVLLLDEP---TSGLDSRS 205 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~illLDEP---tsgLD~~~ 205 (605)
.++++++.+++.+. . .+++|.|+++++.+++++ +.+|+++||||| |++||+..
T Consensus 72 ------------------~~~~il~~~~l~d~---~-~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~ 129 (222)
T cd03285 72 ------------------IVDCILARVGASDS---Q-LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG 129 (222)
T ss_pred ------------------ccceeEeeeccccc---h-hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH
Confidence 12334555666533 2 378999999999999999 899999999999 99999988
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 206 AFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 206 ~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
.... .++.+.++.|.++|++||+. ++.+++|++..+++|++...++
T Consensus 130 ~~~~--il~~l~~~~~~~vlisTH~~--el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 130 LAWA--IAEYIATQIKCFCLFATHFH--ELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHH--HHHHHHhcCCCeEEEEechH--HHHHHhhcCCCeEEEEEEEEEe
Confidence 7543 33555444478999999973 5889999999999999987664
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=9.6e-19 Score=212.42 Aligned_cols=197 Identities=23% Similarity=0.272 Sum_probs=145.0
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh----------CCCCCCccEEEECCeeCCc-------------ccccC
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILS----------ARTSPTNGTILLNSSPIKP-------------SSFRK 111 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~----------g~~~~~~G~I~~~g~~~~~-------------~~~~~ 111 (605)
=|+|++.+|+-|.+++|.|-||||||||++-.. |. ...+--|.++-.|+.. +.+|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 489999999999999999999999999997443 21 1223446666665520 00000
Q ss_pred c-------------------------------eEEEcCCCCCC--------------------------------CCCCH
Q 007383 112 L-------------------------------SAYVPQHDACI--------------------------------PSLTV 128 (605)
Q Consensus 112 ~-------------------------------i~yv~Q~~~l~--------------------------------~~lTv 128 (605)
. -|++.=+-.++ -.|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0 01111111111 24677
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHH
Q 007383 129 YETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHD---PAVLLLDEPTSGLDSRS 205 (605)
Q Consensus 129 ~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~---P~illLDEPtsgLD~~~ 205 (605)
.|.+.|.... .+-.+.-+.|.++||....--+....|||||.||+-||.+|..+ +.+++|||||+||++..
T Consensus 1664 ~ea~~~F~~~------~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d 1737 (1809)
T PRK00635 1664 EEVAETFPFL------KKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQ 1737 (1809)
T ss_pred HHHHHHhhcc------HHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHH
Confidence 7777766321 22344556788999986653333589999999999999999875 78999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe------CCeEEEecChhhHHH
Q 007383 206 AFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS------KGSVVHHGTLASLET 261 (605)
Q Consensus 206 ~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~------~G~iv~~g~~~~~~~ 261 (605)
...+++.|++|.+. |.|||++.|+++ +.+.+|.|+-|- .|+|++.|+|+++.+
T Consensus 1738 ~~~Ll~~l~~L~~~-g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1738 KSALLVQLRTLVSL-GHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999864 789999999985 677799999993 479999999999853
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3e-19 Score=184.06 Aligned_cols=75 Identities=28% Similarity=0.407 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 170 NLSGGERRRVSIGLSLLH----DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
.|||||+||+++|++++. +|+++++||||+|||+.....+.+.|+++++ +.|+|++||++. +.+.+|+++.|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEEE
Confidence 499999999999997654 9999999999999999999999999999863 689999999986 56899999999
Q ss_pred eCC
Q 007383 246 SKG 248 (605)
Q Consensus 246 ~~G 248 (605)
.+|
T Consensus 246 ~~~ 248 (276)
T cd03241 246 EKE 248 (276)
T ss_pred EEe
Confidence 875
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=2.1e-18 Score=191.21 Aligned_cols=128 Identities=27% Similarity=0.378 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCC
Q 007383 125 SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDP---AVLLLDEPTSGL 201 (605)
Q Consensus 125 ~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P---~illLDEPtsgL 201 (605)
.|||.|...|.... ..-.+.-+.|..+||.-..--.....|||||.|||-+|.+|.... -+++|||||+||
T Consensus 783 ~MTveEA~~FF~~~------p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL 856 (935)
T COG0178 783 DMTVEEALEFFEAI------PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 856 (935)
T ss_pred hccHHHHHHHHhcc------hHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence 46788877776532 123344566778899755433335799999999999999999877 899999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHHH
Q 007383 202 DSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLET 261 (605)
Q Consensus 202 D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~~ 261 (605)
-....+++++.|.+|.+. |.|||++.|+++ +.+.+|.|+=| ..|+|+..|+|+++.+
T Consensus 857 H~~Di~kLl~VL~rLvd~-GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 857 HFDDIKKLLEVLHRLVDK-GNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999874 789999999986 78999999998 3579999999999854
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.80 E-value=1.1e-19 Score=192.43 Aligned_cols=187 Identities=25% Similarity=0.375 Sum_probs=140.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|.++|+-.--+ ....+...+||.+++|--+.|.||||||||+|.++|+|+.|...|...+
T Consensus 481 gI~lenIpvItP----------------~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--- 541 (728)
T KOG0064|consen 481 GIILENIPVITP----------------AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--- 541 (728)
T ss_pred ceEEecCceecc----------------CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec---
Confidence 467777766443 3456899999999999999999999999999999999999875554432
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhH------HHHHHHHHHHHcCCcccccccc--------c
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQ------IDTIITVLLTELRLAHLASTRL--------A 168 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~------~~~~v~~~l~~l~L~~~~~~~~--------~ 168 (605)
+. +..+-|+||.|..- .-|.+|.+-|. .+.++ .++....+|+.+.|++...+.. .
T Consensus 542 ---P~--~~~mFYIPQRPYms-~gtlRDQIIYP-----dS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWk 610 (728)
T KOG0064|consen 542 ---PR--PNNIFYIPQRPYMS-GGTLRDQIIYP-----DSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWK 610 (728)
T ss_pred ---CC--CcceEeccCCCccC-cCcccceeecC-----CcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHH
Confidence 21 23489999998755 45777766553 22211 2344556666666655443221 1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
..||||||||+++||.+.++|+.-+|||-||+..+.....+.+..++ -|.+.|-++|+|+ ..++-..++-.
T Consensus 611 d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 611 DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCcc--HHHHHHHHHhc
Confidence 46999999999999999999999999999999999888888877665 4899999999998 46654444443
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.79 E-value=2.5e-19 Score=170.08 Aligned_cols=141 Identities=26% Similarity=0.351 Sum_probs=102.6
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHH
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFS 135 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 135 (605)
....+..+.++.++.|+|||||||||+++.+....-...|.+.... +. +.-.++++....+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc------cCCCcceeeEEEE------------
Confidence 3444555566679999999999999999998766544433332210 00 0001111111110
Q ss_pred HhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHH
Q 007383 136 ARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLH----DPAVLLLDEPTSGLDSRSAFNVMQ 211 (605)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~ 211 (605)
.-. ..+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+
T Consensus 72 ---------------------------i~~--~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~ 122 (162)
T cd03227 72 ---------------------------IFT--RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAE 122 (162)
T ss_pred ---------------------------ehh--eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 000 13499999999999999987 789999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 212 TLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 212 ~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
.+.++.++ +.++|++||+++ +.+.+|+++.|..
T Consensus 123 ~l~~~~~~-~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 123 AILEHLVK-GAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred HHHHHHhc-CCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 99998766 789999999986 5678999999864
No 410
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.3e-19 Score=187.62 Aligned_cols=202 Identities=26% Similarity=0.348 Sum_probs=145.8
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCeeCC--c--------ccccCceEEEcC
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS--PTNGTILLNSSPIK--P--------SSFRKLSAYVPQ 118 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~--~~~G~I~~~g~~~~--~--------~~~~~~i~yv~Q 118 (605)
..+..+.|-|+.|-.|.-++++||||-||||||+.|+.+-- |..=+|++.-+.+- . +.-.++...+..
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLee 354 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEE 354 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHH
Confidence 35778999999999999999999999999999999998732 22333444433321 0 000011111111
Q ss_pred CCC-----CCCCCCHHHHHHHHHh-cCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEE
Q 007383 119 HDA-----CIPSLTVYETFLFSAR-LLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVL 192 (605)
Q Consensus 119 ~~~-----l~~~lTv~e~l~~~~~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~il 192 (605)
++. --...|+.|-+.-.+. +........+.+...+|.-+|.+.....+....+|||-|-||++||||..+|-+|
T Consensus 355 e~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLL 434 (807)
T KOG0066|consen 355 EAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLL 434 (807)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceee
Confidence 111 1134577776654332 2211222345678889999999765544546899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE-EecChh
Q 007383 193 LLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV-HHGTLA 257 (605)
Q Consensus 193 lLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~~~ 257 (605)
.|||||+.||.....-+-+.|+.+. +|.++++||-.+ +-..|..|+-|++.++. |.|+..
T Consensus 435 MLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQgF-LD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 435 MLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQGF-LDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred eecCCccccccceeeehhhHHhhhh----heeEEEecccch-HHHHHHHHhhhhhhhhhhhcchHH
Confidence 9999999999999888889999884 599999999886 78899999999988775 556654
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.74 E-value=1.2e-17 Score=195.17 Aligned_cols=133 Identities=28% Similarity=0.418 Sum_probs=109.9
Q ss_pred CCCCCHHHHHHHHHhc-CCCCh--------hHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhhCC--C
Q 007383 123 IPSLTVYETFLFSARL-LVPKT--------SQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHDP--A 190 (605)
Q Consensus 123 ~~~lTv~e~l~~~~~~-~~~~~--------~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~P--~ 190 (605)
+..+||.|.+.|.-.+ ..... ++..++++ .++.+||.+. .++.+ .+|||||||||.||++|..+| +
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-~~LSgGE~QRv~LA~aL~~~~~~~ 511 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-GTLSGGEAQRIRLATQIGSGLTGV 511 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-hhCCHHHHHHHHHHHHHhhCCCCc
Confidence 3468999999985444 21110 12344554 6888999866 57774 999999999999999999997 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 191 VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 191 illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
+++|||||+|||+..+..+.++|+++++ .|.|||+++|+++ ++ ..+|++++| ++|++++.|+++++.
T Consensus 512 llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 512 LYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9999999999999999999999999975 5889999999987 35 469999999 999999999998873
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.73 E-value=1.1e-17 Score=164.63 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=105.0
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART-SPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~-~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
.+.+| +++.+|++++|+|||||||||||++|++.. .+..|... + ..+..+++..| ++..++..+
T Consensus 19 ~~~~~--~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-------~-~~~~~i~~~dq---i~~~~~~~d-- 83 (202)
T cd03243 19 FVPND--INLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-------P-AESASIPLVDR---IFTRIGAED-- 83 (202)
T ss_pred eEeee--EEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-------c-ccccccCCcCE---EEEEecCcc--
Confidence 34444 455589999999999999999999999543 12222110 0 00112333222 111111111
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ- 211 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~- 211 (605)
..... .+.++++++ |++.+.+++.+|+++++||||+|+|+.....+..
T Consensus 84 -----------------------------~i~~~-~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 84 -----------------------------SISDG-RSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred -----------------------------cccCC-ceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 11122 245666655 5777788899999999999999999999888865
Q ss_pred HHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 212 TLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 212 ~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+++.+.+ .+.++|++||+++ +.+.+|++..++.|++...++..++
T Consensus 133 ll~~l~~-~~~~vi~~tH~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 133 VLEHLLE-KGCRTLFATHFHE--LADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHh-cCCeEEEECChHH--HHHHhhcCCCeEEEEEEEEecCCee
Confidence 4666654 4789999999964 6788999999999999888765443
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=2.7e-17 Score=191.96 Aligned_cols=132 Identities=30% Similarity=0.440 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHHHhc-CCCC-h-------hHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhhCC--CE
Q 007383 124 PSLTVYETFLFSARL-LVPK-T-------SQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHDP--AV 191 (605)
Q Consensus 124 ~~lTv~e~l~~~~~~-~~~~-~-------~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~P--~i 191 (605)
-.|||.|.+.|...+ .... . ++..+++ +.+..+||... .++. +.+|||||+|||.||++|+.+| ++
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~-~~tLSGGE~QRv~LA~aL~~~~~~~l 510 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA-AGTLSGGEAQRIRLATQIGSGLTGVL 510 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC-cCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence 368999998888665 2211 1 1122223 23677888765 4666 4999999999999999999986 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 192 LLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 192 llLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
++|||||+|||+.+...+++.|++++++ |.|||+++|+++ .+ ..+|++++| ++|++++.|+++++.
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 9999999999999999999999999764 889999999986 34 589999999 899999999998863
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=6.2e-17 Score=166.34 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcC
Q 007383 169 HNLSGGERRRVSIGLSLL---------HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTI 239 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 239 (605)
.-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+.. .+.+.+
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-----q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-----QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-----CEEEEeCCch-hccchh
Confidence 458999999999999985 7999999999999999999999999998752 3455555544 356666
Q ss_pred ---CeEEEEeCCeE
Q 007383 240 ---DRILLLSKGSV 250 (605)
Q Consensus 240 ---d~v~~l~~G~i 250 (605)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999985
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.72 E-value=1.4e-17 Score=163.82 Aligned_cols=138 Identities=20% Similarity=0.306 Sum_probs=101.6
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
.++.+.+|++++.++|++++|+||||+||||+++++++..- +.+.-.|| +.....+++.|
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-----------------la~~G~~v---pa~~~~l~~~d 73 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-----------------MAQIGCFV---PAEYATLPIFN 73 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-----------------HHHcCCCc---chhhcCccChh
Confidence 34679999999999999999999999999999999988730 11112233 33445566767
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVM 210 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 210 (605)
++... ++..+..++. .+.+|+|++|+ ..+.+++.+|+++++|||++|+|+.....+.
T Consensus 74 ~I~~~---------------------~~~~d~~~~~-~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~ 130 (204)
T cd03282 74 RLLSR---------------------LSNDDSMERN-LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAIS 130 (204)
T ss_pred heeEe---------------------cCCccccchh-hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence 66322 2222222333 37899999965 5667789999999999999999998866654
Q ss_pred -HHHHHHHhcCCcEEEEEeCCCC
Q 007383 211 -QTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 211 -~~L~~l~~~~g~tii~~~H~~~ 232 (605)
..++.+.+. |.++|++||+.+
T Consensus 131 ~~il~~l~~~-~~~~i~~TH~~~ 152 (204)
T cd03282 131 LAILECLIKK-ESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHhc-CCEEEEECChHH
Confidence 567777654 899999999976
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.68 E-value=3e-16 Score=162.98 Aligned_cols=178 Identities=23% Similarity=0.353 Sum_probs=139.5
Q ss_pred CceeeeeeeEEEeCC-----eEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCeeCCcccccCceEEEcCCCCCCCC
Q 007383 52 PTYILKNVSLTAYPS-----QILAIVGPSGAGKSTLLDILSARTSPTNG-TILLNSSPIKPSSFRKLSAYVPQHDACIPS 125 (605)
Q Consensus 52 ~~~iL~~vs~~i~~G-----e~~ailG~nGaGKTTLL~~l~g~~~~~~G-~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 125 (605)
.+.-+-+..+.++.| |++..+|+||-||||++++++|+++|++| +|- .-.++|-||.-.--..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p-----------~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIP-----------VLNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccc-----------ccceeccccccCcccc
Confidence 344667777777776 68899999999999999999999999765 321 1236777776544445
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007383 126 LTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRS 205 (605)
Q Consensus 126 lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~ 205 (605)
-||++.+.--.+ +.-...+.+.++++-|.+++..|..+ .+|||||+|||++|..|-..+++++.|||.+-||+..
T Consensus 417 ~tvR~ll~~kIr----~ay~~pqF~~dvmkpL~ie~i~dqev-q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQ 491 (592)
T KOG0063|consen 417 GTVRQLLHTKIR----DAYMHPQFVNDVMKPLQIENIIDQEV-QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQ 491 (592)
T ss_pred chHHHHHHHHhH----hhhcCHHHHHhhhhhhhHHHHHhHHh-hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHH
Confidence 689887653221 11123456788899999998888886 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 206 AFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 206 ~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+...-+.+++.--..++|-.++.||.-- .--++||+++..
T Consensus 492 Ri~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 492 RIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 9998888888655557899999999643 234689988754
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.65 E-value=3.7e-16 Score=159.56 Aligned_cols=140 Identities=24% Similarity=0.264 Sum_probs=99.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc----ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP----SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPK 142 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 142 (605)
.-++|+||||||||||+++|+|.++|.+|+|.++|+++.. .++.+.+++++|++. .+.++|.|+..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCPK-------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccchH--------
Confidence 5789999999999999999999999999999999998742 344455778888653 445566554210
Q ss_pred hhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q 007383 143 TSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHR 222 (605)
Q Consensus 143 ~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~ 222 (605)
.+ | ..+..+..+|+++++|||++ ...+..+++.+. .|.
T Consensus 183 ---~~--------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~--~G~ 220 (270)
T TIGR02858 183 ---AE--------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH--AGV 220 (270)
T ss_pred ---HH--------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh--CCC
Confidence 00 1 02223336999999999974 334555555553 488
Q ss_pred EEEEEeCCCChHHH------------hcCCeEEEEeCCeEEEecChhhH
Q 007383 223 TVILSIHQPSFKIL------------STIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 223 tii~~~H~~~~~i~------------~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
++|+++|+++.+-. ..|||+++|++|+ ..|.++++
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 99999998653212 6689999999876 55665543
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.64 E-value=7.3e-16 Score=153.12 Aligned_cols=157 Identities=19% Similarity=0.166 Sum_probs=106.8
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
++.+.+|++++.++ ++++|.||||||||||||.+++..-. ..| ..+... +..++++.| +++.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g------~~vp~~--~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIG------SFVPAS--KAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccC------Ceeccc--cceecceee---EeccCCchh
Confidence 45689999999988 99999999999999999999875321 112 111111 234666654 556677777
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCH--HHHHHHHHHHHHhhCCCEEEEeCC---CCCCCHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG--GERRRVSIGLSLLHDPAVLLLDEP---TSGLDSRS 205 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSg--GerqRv~ia~aL~~~P~illLDEP---tsgLD~~~ 205 (605)
++..+ .|. .|+++++-+...+.+|++++|||| |+++|...
T Consensus 85 ~ls~g-----------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~ 129 (216)
T cd03284 85 DLAGG-----------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS 129 (216)
T ss_pred hhccC-----------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Confidence 66432 111 233333334444679999999999 88888755
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 206 AFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 206 ~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
. ...+++.+.+..+.++|++||+. ++.+++|++.-+.+|++...+..+++
T Consensus 130 ~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 130 I--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred H--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 2 23344445443378999999996 47888998887888888777666554
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.56 E-value=1.1e-15 Score=148.36 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVM-QTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~-~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++.+.++|++||+++ +.+++|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhcCccceE
Confidence 778888776333332 34599999999999999999888875 5567776534789999999984 6777775333344
Q ss_pred CeE
Q 007383 248 GSV 250 (605)
Q Consensus 248 G~i 250 (605)
++.
T Consensus 137 ~~~ 139 (185)
T smart00534 137 LHM 139 (185)
T ss_pred EEE
Confidence 443
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.52 E-value=5.5e-15 Score=147.04 Aligned_cols=88 Identities=27% Similarity=0.473 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 007383 148 TIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL----HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRT 223 (605)
Q Consensus 148 ~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~t 223 (605)
+.+.+.+...++.. ..+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+ +.-
T Consensus 121 ~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q 191 (220)
T PF02463_consen 121 KDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQ 191 (220)
T ss_dssp HHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSE
T ss_pred cccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence 44555555554432 479999999999997764 47789999999999999999999999999864 478
Q ss_pred EEEEeCCCChHHHhcCCeEEEEe
Q 007383 224 VILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 224 ii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
+|++||++. .++.+|+.+-+.
T Consensus 192 ~ii~Th~~~--~~~~a~~~~~v~ 212 (220)
T PF02463_consen 192 FIITTHNPE--MFEDADKLIGVT 212 (220)
T ss_dssp EEEE-S-HH--HHTT-SEEEEEE
T ss_pred ccccccccc--cccccccccccc
Confidence 999999974 789999988764
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.51 E-value=4.3e-13 Score=143.35 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcC
Q 007383 169 HNLSGGERRRVSIGLSLL---------HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTI 239 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 239 (605)
..+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.+.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhhhh
Confidence 468999999999999886 799999999999999999999999998764 347899999876 355543
Q ss_pred --CeEEEEeCCeE
Q 007383 240 --DRILLLSKGSV 250 (605)
Q Consensus 240 --d~v~~l~~G~i 250 (605)
++++.+.+|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57899999986
No 422
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.49 E-value=7.1e-12 Score=126.05 Aligned_cols=225 Identities=12% Similarity=0.112 Sum_probs=159.5
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhcC-CCC--hhhHHH----HHHHHHHHHHHHHHHHhhhHHHHH-hhhhH
Q 007383 337 RFWKIIYRTRQLLLTNTLEALIVGLVLGTIFINV-GYD--KQGIEN----RFGLFAFTLTFLLSSTTETLPIFI-NERPI 408 (605)
Q Consensus 337 R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~-~~~--~~~~~~----~~g~lf~~~~~~~~~~~~~i~~~~-~er~v 408 (605)
|+++...|||.....-+++.+++.+++|.++-+. +.+ ..+... -.|++.+.+...+.. ....... .|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhCH
Confidence 6778889999999999999999999998887543 111 111111 123332222222111 1122211 23334
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 007383 409 LLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLSSLAPNYI 488 (605)
Q Consensus 409 ~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~ 488 (605)
+.|=. ..=.++..|+++|.+.+++..++..+++..+.+++.+++. ..++.+++..++..++..++|.+++...++.+
T Consensus 79 ~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33333 3333678999999999999999999999999988877554 34555556666777788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccCCCccccchhhHhhhcC
Q 007383 489 AGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQENTTCMVTGGDVLQNRG 568 (605)
Q Consensus 489 ~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~~~~c~~~g~~~L~~~g 568 (605)
.++.+.+.+..+++.+||.+.|.+.+|.|++|+.+++|++|+.|++-..-.++.
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~-------------------------- 209 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS-------------------------- 209 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC--------------------------
Confidence 888888888999999999999999999999999999999999999654332211
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHH
Q 007383 569 LHERQRWTNIYFLIGFFVLYRLLCF 593 (605)
Q Consensus 569 ~~~~~~~~~~~il~~~~i~~~~~~~ 593 (605)
...+.+.++++++++.+++.+++.
T Consensus 210 -~~~~~~~~~~~l~~~~~~~~~l~~ 233 (236)
T TIGR01247 210 -PTFPLEQDLLVLTLLAVIFVGIAA 233 (236)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHH
Confidence 012356778888888887777654
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=1.3e-13 Score=136.64 Aligned_cols=132 Identities=20% Similarity=0.252 Sum_probs=89.5
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhC--CCCCCccEEEECCeeCCcccccCceEEEcCCCCCC-CCCCHHH
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSA--RTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACI-PSLTVYE 130 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g--~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~-~~lTv~e 130 (605)
.+-+|+++.=..+..++|.||||+|||||||.++. .+ +..|...... .-.++|..|....+ ...++.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~- 86 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--------SATIGLVDKIFTRMSSRESVS- 86 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--------CcEEeeeeeeeeeeCCccChh-
Confidence 45566665422238999999999999999999984 33 4455543321 12356666642211 111111
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLS--GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFN 208 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LS--gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~ 208 (605)
.++| .-|.||++++++++.+|+++++|||++|+|+.....
T Consensus 87 --------------------------------------~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~ 128 (213)
T cd03281 87 --------------------------------------SGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAG 128 (213)
T ss_pred --------------------------------------hccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHH
Confidence 1222 356799999999999999999999999999987555
Q ss_pred H-HHHHHHHHhc--CCcEEEEEeCCCCh
Q 007383 209 V-MQTLKSISAS--RHRTVILSIHQPSF 233 (605)
Q Consensus 209 i-~~~L~~l~~~--~g~tii~~~H~~~~ 233 (605)
+ ...++++.++ .+.++|++||+++.
T Consensus 129 ~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 129 LLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 5 5688888653 13589999999863
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.47 E-value=7.2e-14 Score=122.23 Aligned_cols=74 Identities=22% Similarity=0.173 Sum_probs=62.9
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCC---cccccCceEEEcCCCCCCCCCCHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK---PSSFRKLSAYVPQHDACIPSLTVY 129 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (605)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++. ....++.+++++|+ +++ .|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 46899999999999999999999999999999986 899999999874 33456667888887 443 5999
Q ss_pred HHHHHH
Q 007383 130 ETFLFS 135 (605)
Q Consensus 130 e~l~~~ 135 (605)
|||.+.
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999884
No 425
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=5.9e-13 Score=132.53 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=90.8
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSA-RTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g-~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
.+.+.+|+++.+++|++++|.||||+||||+++++++ .+.+..|...... .. .++|..| ++-.+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~-------~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA-------TLSIFDS---VLTRMGASD 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce-------EEeccce---EEEEecCcc
Confidence 3578999999999999999999999999999999999 5566777654321 11 1222222 111111111
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLS--GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFN 208 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LS--gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~ 208 (605)
++. .++| ..|-+|++-...-+.+|+++|+|||.+|.|+.....
T Consensus 86 ~~~-----------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~ 130 (222)
T cd03287 86 SIQ-----------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIA 130 (222)
T ss_pred ccc-----------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence 110 1111 123344444444567899999999999999877777
Q ss_pred H-HHHHHHHHhcCCcEEEEEeCCCC
Q 007383 209 V-MQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 209 i-~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
+ ..+++.+.+..+.++|++||+++
T Consensus 131 i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 131 IAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred HHHHHHHHHHhccCCeEEEEcccHH
Confidence 5 56777777654789999999986
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.45 E-value=1.6e-13 Score=158.83 Aligned_cols=130 Identities=20% Similarity=0.308 Sum_probs=92.2
Q ss_pred eeEEEeCC-eEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEECCeeCCcccccCceEEEcCCCC-CCCCCCHHHHHHHH
Q 007383 59 VSLTAYPS-QILAIVGPSGAGKSTLLDILSAR-TSPTNGTILLNSSPIKPSSFRKLSAYVPQHDA-CIPSLTVYETFLFS 135 (605)
Q Consensus 59 vs~~i~~G-e~~ailG~nGaGKTTLL~~l~g~-~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~ 135 (605)
+|+.+.+| +.++|.||||+|||||||+|+|. +.+..| .+||.+.. .+ .+.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------~~Vpa~~~~~~---~~~d~i~-- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------IPIPANEHSEI---PYFEEIF-- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC------------------CCccCCccccc---cchhhee--
Confidence 68888877 99999999999999999999987 233333 13443321 11 1111110
Q ss_pred HhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHH
Q 007383 136 ARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNV-MQTLK 214 (605)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i-~~~L~ 214 (605)
..+ +..+..... .+.+|+|+++++.|++.+ .+|+++|+|||++|+|+.....+ ..+++
T Consensus 371 ~~i-------------------~~~~si~~~-LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe 429 (771)
T TIGR01069 371 ADI-------------------GDEQSIEQN-LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE 429 (771)
T ss_pred eec-------------------ChHhHHhhh-hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 000 000001112 378999999999998876 89999999999999999999999 57888
Q ss_pred HHHhcCCcEEEEEeCCCCh
Q 007383 215 SISASRHRTVILSIHQPSF 233 (605)
Q Consensus 215 ~l~~~~g~tii~~~H~~~~ 233 (605)
.+++ .|.++|++||+.+.
T Consensus 430 ~l~~-~g~~viitTH~~eL 447 (771)
T TIGR01069 430 YLLK-QNAQVLITTHYKEL 447 (771)
T ss_pred HHHh-cCCEEEEECChHHH
Confidence 8865 58899999999764
No 427
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.43 E-value=3.5e-13 Score=140.47 Aligned_cols=166 Identities=30% Similarity=0.418 Sum_probs=122.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEE----------------------cCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYV----------------------PQHDA 121 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv----------------------~Q~~~ 121 (605)
+||++.+++|.||-||||-|++++|.++|.-|.-. ++..|...++|- ||.-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~------~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd 171 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD------NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVD 171 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC------CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHH
Confidence 58999999999999999999999999999655321 011111111110 11100
Q ss_pred CCC---CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 007383 122 CIP---SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPT 198 (605)
Q Consensus 122 l~~---~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPt 198 (605)
.+| ..+|.+++. ....++..+++++.+.|.+..++.+ .+|||||.||.+||++-+++.++.++|||.
T Consensus 172 ~ipr~~k~~v~~~l~---------~~~~r~~~~~~~~~~~L~~~~~re~-~~lsggelqrfaia~~~vq~advyMFDEpS 241 (592)
T KOG0063|consen 172 QIPRAVKGTVGSLLD---------RKDERDNKEEVCDQLDLNNLLDREV-EQLSGGELQRFAIAMVCVQKADVYMFDEPS 241 (592)
T ss_pred HHHHHHHHHHHHHHH---------HHhhcccHHHHHHHHHHhhHHHhhh-hhcccchhhhhhhhhhhhhhcceeEecCCc
Confidence 011 113333222 1122335677888889988888886 999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 199 SGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 199 sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+-||...+..-...++.+.. ..+=||++.||.+. ..-+.|-+..|..
T Consensus 242 sYLDVKQRLkaA~~IRsl~~-p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 242 SYLDVKQRLKAAITIRSLIN-PDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred ccchHHHhhhHHHHHHHhhC-CCCeEEEEEeechH-HHhhhcceeEEec
Confidence 99999999999999999985 47899999999984 4446788888863
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.43 E-value=1.8e-13 Score=135.72 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=44.7
Q ss_pred CCCHH--HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 007383 170 NLSGG--ERRRVSIGLSLLHDPAVLLLDEPT-----SGLDSRSAFNVMQTLKSISA 218 (605)
Q Consensus 170 ~LSgG--erqRv~ia~aL~~~P~illLDEPt-----sgLD~~~~~~i~~~L~~l~~ 218 (605)
..+|+ |++++.||++++.+|+++++|||| +|||+.+++.+.+.++++++
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 34444 999999999999999999999999 99999999999999999864
No 429
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.42 E-value=8.3e-12 Score=123.10 Aligned_cols=149 Identities=17% Similarity=0.105 Sum_probs=122.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007383 419 RLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLSSLAPNYIAGTSLVTIFL 498 (605)
Q Consensus 419 ~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~ 498 (605)
+...++++|.+..++..++.++++..+.|++.|++.. ++..+++.+++..++..++|.++++++++...+. ....+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4567899999999999999999999999999999864 5777778888889999999999999998765433 33445
Q ss_pred HHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccCCCccccchhhHhhhcCCCcCChhHHH
Q 007383 499 GAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQENTTCMVTGGDVLQNRGLHERQRWTNI 578 (605)
Q Consensus 499 ~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~~~~c~~~g~~~L~~~g~~~~~~~~~~ 578 (605)
.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-...+++. ..+.|.++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~----------------------------~~~~~~~~ 185 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN----------------------------DGTLWQAV 185 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc----------------------------HHHHHHHH
Confidence 56777899999999999999999999999999999976665431 11357888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007383 579 YFLIGFFVLYRLLCFVVLIRR 599 (605)
Q Consensus 579 ~il~~~~i~~~~~~~~~L~~~ 599 (605)
++++++.+++.++++...|++
T Consensus 186 ~~L~~~~~v~~~la~~~~~~~ 206 (208)
T TIGR03062 186 AVLLLILVVFLALSLLSARRK 206 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999988888887776544
No 430
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.42 E-value=4.6e-12 Score=137.58 Aligned_cols=174 Identities=21% Similarity=0.269 Sum_probs=117.3
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCC-----------cccccCceEEEcCCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK-----------PSSFRKLSAYVPQHD 120 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~-----------~~~~~~~i~yv~Q~~ 120 (605)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++.|.|.+.|+.-. ...+++.+.++.+-+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 35689999 999999999999999999999999999999999999999665431 123567788887644
Q ss_pred CCCCCCCHHHHHH--HHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH-HHHhhCCCEEEEeCC
Q 007383 121 ACIPSLTVYETFL--FSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG-LSLLHDPAVLLLDEP 197 (605)
Q Consensus 121 ~l~~~lTv~e~l~--~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia-~aL~~~P~illLDEP 197 (605)
. ++.+-.. +.+ -.+.+....-|-+-.. +..+++ |.+=| |++. +.+.||
T Consensus 224 ~-----~~~~r~~~~~~a-----------~~iAEyfr~~g~~Vll---~~Dslt-----r~A~A~rEis-----l~~ge~ 274 (438)
T PRK07721 224 Q-----PALMRIKGAYTA-----------TAIAEYFRDQGLNVML---MMDSVT-----RVAMAQREIG-----LAVGEP 274 (438)
T ss_pred C-----CHHHHHHHHHHH-----------HHHHHHHHHCCCcEEE---EEeChH-----HHHHHHHHHH-----HhcCCC
Confidence 3 1111111 111 1122222222321100 001111 11111 1111 123454
Q ss_pred --CCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 198 --TSGLDSRSAFNVMQTLKSISA-SRHR-----TVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 198 --tsgLD~~~~~~i~~~L~~l~~-~~g~-----tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
|+|+|+.....+.++++++.+ +.|. ||++.+||++. .++|++..+.+|+++.+++..+
T Consensus 275 P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 275 PTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 689999999999999999874 3575 99999999973 7899999999999999988654
No 431
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.41 E-value=1.2e-10 Score=118.62 Aligned_cols=235 Identities=15% Similarity=0.090 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHH----H-hhhH-HHHH
Q 007383 331 VCTLYNRFWKIIYRT-RQLLLTNTLEALIVGLVLGTIFINVGYDKQGIENRFGLFAFTLTFLLSS----T-TETL-PIFI 403 (605)
Q Consensus 331 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~----~-~~~i-~~~~ 403 (605)
...+.+|+++.++|+ |......+++.++.-+++|..+-....+..+ .+.. -|.......++ + .... ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~--~f~~pg~l~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYA--AFLAAGMVATSAMTASTFETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999 9999999999999888888887543121111 1111 12221111111 1 1111 1222
Q ss_pred h--hhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007383 404 N--ERPILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLS 481 (605)
Q Consensus 404 ~--er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~ 481 (605)
. |+..++|-+..-. ++..+.++|++.+.-..++..++...+.++ .|..+. ......+..+.+..++..++|.+++
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3334444444444 778999999999877777776665555443 344433 3444444555667777889999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccCCCccccchh
Q 007383 482 SLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQENTTCMVTGG 561 (605)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~~~~c~~~g~ 561 (605)
++.++.+.+..+..++..|++.+||.+.|.+.+|.|++++.+++|+.|+.|++-..-+++.
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~------------------- 221 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP------------------- 221 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC-------------------
Confidence 9999999888888999999999999999999999999999999999999999654432210
Q ss_pred hHhhhcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007383 562 DVLQNRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIRR 599 (605)
Q Consensus 562 ~~L~~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~~ 599 (605)
..+.|.++++++++.+++..++....+++
T Consensus 222 ---------~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 222 ---------GTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01235677888888887777776655543
No 432
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.40 E-value=1e-10 Score=117.45 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=143.9
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHHHHHHHHHHhhhHHHHHhhh--hHHHHHhcCCCCC
Q 007383 343 YRTRQLLLTNTLEALIVGLVLGTIFINVGYDKQGIEN-RFGLFAFTLTFLLSSTTETLPIFINER--PILLRETSSGVYR 419 (605)
Q Consensus 343 ~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~i~~~~~er--~v~~rE~~~g~Y~ 419 (605)
+|||.....-+.+.+++-++++.+|-+.. +.+..+. ..|.+-.... .++.+..--....|| ..+.|=+..-. +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAI--STAFTGQAIAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHH--HHHHHHHHHHHHHHHHhCHHHHHhcCCC-c
Confidence 69999998888888887777777665421 1122221 1122111111 111111111233333 46666665554 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 007383 420 LSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLSSLAP---NYIAGTSLVTI 496 (605)
Q Consensus 420 ~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~---~~~~a~~~~~~ 496 (605)
+..|+++|.+..+...++..+++. +++++.|++..... ..+++...+..+.+.+++.+++++.+ +.+.+..+..+
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999888888777655554 55667788765433 33344445555666777777777764 44455777888
Q ss_pred HHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccCCCccccchhhHhhhcCCCcCChhH
Q 007383 497 FLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQENTTCMVTGGDVLQNRGLHERQRWT 576 (605)
Q Consensus 497 ~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~~~~c~~~g~~~L~~~g~~~~~~~~ 576 (605)
...+++++||.+.|.+.+|.|++|+.+++|++|+.+++-..-.++. +....|.
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~---------------------------~~~~~~~ 208 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV---------------------------DTFGAVR 208 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC---------------------------ChhhHHH
Confidence 8889999999999999999999999999999999998765432211 1123567
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007383 577 NIYFLIGFFVLYRLLCFVVLI 597 (605)
Q Consensus 577 ~~~il~~~~i~~~~~~~~~L~ 597 (605)
++++++++.+++..++....+
T Consensus 209 ~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 209 DLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888888777766655544
No 433
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.39 E-value=2.3e-10 Score=116.48 Aligned_cols=205 Identities=15% Similarity=0.123 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhcC-CC------Ch-hhH--HHHHHHHHHHHHHHHHHHhh
Q 007383 328 LQEVCTLYNRFWKIIYRTRQLLLTNTLEALIVGLVLGTIFINV-GY------DK-QGI--ENRFGLFAFTLTFLLSSTTE 397 (605)
Q Consensus 328 ~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~-~~------~~-~~~--~~~~g~lf~~~~~~~~~~~~ 397 (605)
+++++.+++|+++...|||..+...+++.+++-+++|..|-.. +. +. .+. .--.|++-+...+..+. .
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--~ 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--S 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH--h
Confidence 3678999999999999999999999999999999999988543 11 00 011 11123322222221111 1
Q ss_pred hHH-HHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHH
Q 007383 398 TLP-IFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSF 476 (605)
Q Consensus 398 ~i~-~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~ 476 (605)
+.. ..-.|+..+.+=+.... +...+.+++++...-..++..++...+.+. .|.+.....+......+++..++..++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 11123334444444444 778899999999988877776665555443 366555444444445556667778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCC---ccchhhhhcccHHHHHHHHHHH
Q 007383 477 VLFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSM---PKYWLFMHFFSMYKYALDALLI 536 (605)
Q Consensus 477 ~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~i---p~~~~W~~yiSp~~Y~~~al~~ 536 (605)
|+++|.++++.+.+..+.++++.+++.+||.+.|.+.+ |.|++|+.+++|+.|..|++=.
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999998888888888888999999999998776 8899999999999999988753
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.32 E-value=1.1e-12 Score=132.55 Aligned_cols=176 Identities=15% Similarity=0.162 Sum_probs=105.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc--EEEE--CCee-CCcccccCc---eEEEcCCCCCCCCC---CHH
Q 007383 61 LTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG--TILL--NSSP-IKPSSFRKL---SAYVPQHDACIPSL---TVY 129 (605)
Q Consensus 61 ~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G--~I~~--~g~~-~~~~~~~~~---i~yv~Q~~~l~~~l---Tv~ 129 (605)
+.+.+||.++|+||+|+|||||++.|++......+ .+.+ -+++ .+..++.+. +-.+.+-+. .+.. ..+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 46789999999999999999999999998876433 3222 2221 222222221 122222221 1100 000
Q ss_pred HHHHHHHhcC--CCC----hhHHHHHHHHHHHHcCCcccccccccCCCCHHH--------HHHHHHHHHHhhCCCEEEEe
Q 007383 130 ETFLFSARLL--VPK----TSQIDTIITVLLTELRLAHLASTRLAHNLSGGE--------RRRVSIGLSLLHDPAVLLLD 195 (605)
Q Consensus 130 e~l~~~~~~~--~~~----~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe--------rqRv~ia~aL~~~P~illLD 195 (605)
..+..+.... +.. -++ -.+..+..+++.+.. ...+|||+ +||+++|+++..+++|.+|
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDe-i~r~a~a~~ev~~~~------G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDS-ITRLARAYNTVVPPS------GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEEC-HHHhhhhhhhccccC------CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 1111111000 000 001 111222222222211 35679999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 196 EPTSGLDSRSAFN-VMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 196 EPtsgLD~~~~~~-i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||+.+|+.+... ++ +.++.. .+.|.|+.+|+.. ....+|.|.+|+.|+++
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~la--~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRLA--ERRIFPAIDILKSGTRK 212 (249)
T ss_pred -eeheecCCCcccchH--HHHHhc-CCCcEEEEchHHh--hCCCCCeEEEcCCCCcc
Confidence 999999655543 54 455543 4679999999986 47899999999999874
No 435
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=6.7e-12 Score=141.85 Aligned_cols=77 Identities=25% Similarity=0.398 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 169 HNLSGGERRRVSIGLSLLHD----PAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~----P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||++. +...+|++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHH--HHHhcCeEEE
Confidence 35899999999999999985 699999999999999999999999999973 689999999986 4578999999
Q ss_pred EeCCe
Q 007383 245 LSKGS 249 (605)
Q Consensus 245 l~~G~ 249 (605)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98763
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=7.2e-12 Score=124.42 Aligned_cols=136 Identities=21% Similarity=0.285 Sum_probs=89.3
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
.+.+-+|+++..++|++++|.||||+||||+++++++..-- ..| -.+..+. ..++++ +.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G------~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG------MDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC------CccCccc--cEeccc---cEEEEecCccc
Confidence 45789999999999999999999999999999999876321 111 1111000 001111 11222222222
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG--GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFN 208 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSg--GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~ 208 (605)
++. .++|. .|-+|++-....+.+|+++++|||.+|+|+.....
T Consensus 85 ~~~-----------------------------------~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 85 DIM-----------------------------------KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred ccc-----------------------------------cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 211 11221 24445544455567899999999999999999999
Q ss_pred HHHH-HHHHHhcCCcEEEEEeCCCCh
Q 007383 209 VMQT-LKSISASRHRTVILSIHQPSF 233 (605)
Q Consensus 209 i~~~-L~~l~~~~g~tii~~~H~~~~ 233 (605)
+... ++.+.+..+.++|++||+++.
T Consensus 130 la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 130 IAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 8888 777775447899999999863
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.27 E-value=5.7e-12 Score=146.39 Aligned_cols=152 Identities=20% Similarity=0.292 Sum_probs=97.0
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLF 134 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 134 (605)
+=+|+++. ..+.++.|.|||++||||+|+.++...- +.+.-.+||-+.. ..+++.+++.
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~-----------------maq~G~~vpa~~~--~~i~~~~~i~- 375 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAAL-----------------MAKSGLPIPANEP--SEIPVFKEIF- 375 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHH-----------------HHHhCCCcccCCC--ccccccceEE-
Confidence 33444443 3467899999999999999999963310 0111124444311 0112222221
Q ss_pred HHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HH
Q 007383 135 SARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ-TL 213 (605)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L 213 (605)
..+|-.+..... .+.+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. ++
T Consensus 376 --------------------~~ig~~~si~~~-lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~ail 433 (782)
T PRK00409 376 --------------------ADIGDEQSIEQS-LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISIL 433 (782)
T ss_pred --------------------EecCCccchhhc-hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHH
Confidence 011111111223 378999999999999988 8999999999999999999998864 67
Q ss_pred HHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 214 KSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 214 ~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
..+.+ .|.++|++||+++. ....+|+..++ ++.+.+
T Consensus 434 e~l~~-~~~~vIitTH~~el-~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 434 EYLRK-RGAKIIATTHYKEL-KALMYNREGVE-NASVEF 469 (782)
T ss_pred HHHHH-CCCEEEEECChHHH-HHHHhcCCCeE-EEEEEE
Confidence 77765 48899999999753 33334544433 455544
No 438
>PRK14079 recF recombination protein F; Provisional
Probab=99.27 E-value=8.3e-11 Score=125.23 Aligned_cols=73 Identities=26% Similarity=0.381 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCC
Q 007383 170 NLSGGERRRVSIGLSLL---------HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTID 240 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d 240 (605)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+.. .++|.+++.+ +.+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAIVAGTEAP-----PGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEEEEcCCCC-----CCCc
Confidence 58999999999999998 8999999999999999999999999886532 2555555543 4689
Q ss_pred eEEEEeCCeEE
Q 007383 241 RILLLSKGSVV 251 (605)
Q Consensus 241 ~v~~l~~G~iv 251 (605)
+++.+.+|++.
T Consensus 334 ~~~~~~~~~~~ 344 (349)
T PRK14079 334 LTLRIEAGVFT 344 (349)
T ss_pred eEEEEeccEec
Confidence 99999998764
No 439
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.26 E-value=9.8e-12 Score=140.79 Aligned_cols=78 Identities=27% Similarity=0.410 Sum_probs=69.1
Q ss_pred cCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHH
Q 007383 168 AHNLSGGERRRVSIGLSLL----------HDPAVLLLDEPT-SGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKIL 236 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~----------~~P~illLDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~ 236 (605)
+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ + |.|||++||++. ..
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~~--~~ 540 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKDH--DP 540 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECchh--ch
Confidence 3789999999999999887 599999999998 789999999999999998 2 689999999975 46
Q ss_pred hcCCeEEEEeC-CeE
Q 007383 237 STIDRILLLSK-GSV 250 (605)
Q Consensus 237 ~~~d~v~~l~~-G~i 250 (605)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 554
No 440
>PRK10869 recombination and repair protein; Provisional
Probab=99.25 E-value=1.8e-11 Score=137.60 Aligned_cols=75 Identities=23% Similarity=0.406 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 170 NLSGGERRRVSIGLSLLH----DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +...+|+.+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH--HHHhCCEEEEE
Confidence 479999999999999997 6899999999999999999999999999963 589999999986 56899999999
Q ss_pred eCC
Q 007383 246 SKG 248 (605)
Q Consensus 246 ~~G 248 (605)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 874
No 441
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=2.3e-11 Score=146.86 Aligned_cols=79 Identities=28% Similarity=0.322 Sum_probs=73.1
Q ss_pred cCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHh
Q 007383 168 AHNLSGGERRRVSIGLSLLH----------DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILS 237 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~----------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 237 (605)
++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++++ .|++|++|||++.. ...
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~-~~~ 1025 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEF-RER 1025 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH-HHh
Confidence 58999999999999999985 7999999999999999999999999999976 58999999999984 788
Q ss_pred cCCeEEEEeCC
Q 007383 238 TIDRILLLSKG 248 (605)
Q Consensus 238 ~~d~v~~l~~G 248 (605)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 442
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.23 E-value=9.4e-11 Score=131.12 Aligned_cols=134 Identities=28% Similarity=0.438 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHhc-CCCCh-hHHHHHHHHH------HHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCC--CEEE
Q 007383 124 PSLTVYETFLFSARL-LVPKT-SQIDTIITVL------LTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDP--AVLL 193 (605)
Q Consensus 124 ~~lTv~e~l~~~~~~-~~~~~-~~~~~~v~~~------l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P--~ill 193 (605)
..+++.|.+.|...+ +...+ .-.+..++++ |..+||.-.--.+....|||||.||+-+|..+-.+= =+++
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYV 506 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYV 506 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEE
Confidence 457888888887666 32212 1122223332 445677654433335899999999999999997654 3679
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 194 LDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 194 LDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
||||+-||-+.....+++.|+++.+ .|-|+|++.||.+ ....+|+|+=| +.|+|++.|+++++.
T Consensus 507 LDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~ 576 (935)
T COG0178 507 LDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576 (935)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHH
Confidence 9999999999999999999999986 5789999999974 68899999997 468999999999974
No 443
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.23 E-value=7.4e-11 Score=118.45 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=91.3
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q 007383 62 TAYPSQILAIVGPSGAGKSTL-LDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV 140 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTL-L~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~ 140 (605)
-+++|++++|.|+|||||||| ++.+++..++.. .+.|+.. ..|..+.+....++ +
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~-----------------~~~yi~~------e~~~~~~~~~~~~~-g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY-----------------SVSYVST------QLTTTEFIKQMMSL-G 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC-----------------cEEEEeC------CCCHHHHHHHHHHh-C
Confidence 379999999999999999999 799988765321 1344442 22455555544332 1
Q ss_pred CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHHHHHHHHH
Q 007383 141 PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL----HDPAVLLLDEPTSGL----DSRSAFNVMQT 212 (605)
Q Consensus 141 ~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~illLDEPtsgL----D~~~~~~i~~~ 212 (605)
.. +++.... +.-...+- ...+|+++.++-.+.+.+- .+|+++++||||+++ |+....++.+.
T Consensus 76 ~~-------~~~~~~~-~~l~~~~~--~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~ 145 (230)
T PRK08533 76 YD-------INKKLIS-GKLLYIPV--YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAF 145 (230)
T ss_pred Cc-------hHHHhhc-CcEEEEEe--cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHH
Confidence 10 0111111 11001111 1346777665555444332 379999999999999 88888999999
Q ss_pred HHHHHhcCCcEEEEEeCCCChH------HHhcCCeEEEEe
Q 007383 213 LKSISASRHRTVILSIHQPSFK------ILSTIDRILLLS 246 (605)
Q Consensus 213 L~~l~~~~g~tii~~~H~~~~~------i~~~~d~v~~l~ 246 (605)
+++++++ |.|+++++|+.... +..++|-++.|+
T Consensus 146 l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 146 FKRISSL-NKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHhC-CCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 9999765 67777765543210 123457777665
No 444
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.21 E-value=1.7e-11 Score=121.91 Aligned_cols=63 Identities=33% Similarity=0.514 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDP---AVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P---~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
..+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|++.++ .+.-||+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 457999999999999888766 89999999999999999999999999876 4789999999985
No 445
>PRK15066 inner membrane transport permease; Provisional
Probab=99.19 E-value=2.1e-08 Score=102.32 Aligned_cols=241 Identities=15% Similarity=0.159 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHhhcC-CC-ChhhHHH--HHHHHHHHHHHHHHHHhhhHHH
Q 007383 327 RLQEVCTLYNRFWKIIYRTRQL-LLTNTLEALIVGLVLGTIFINV-GY-DKQGIEN--RFGLFAFTLTFLLSSTTETLPI 401 (605)
Q Consensus 327 ~~~q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~~l~~G~~f~~~-~~-~~~~~~~--~~g~lf~~~~~~~~~~~~~i~~ 401 (605)
.|+-++.+.+|+++...||+.. ...-+++.++..+++|..+-.. +. +...... -.|++-+.....+. ......
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~--~~~~~~ 83 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSY--SNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 4677899999999999999864 3444455556666666654221 11 1011111 11322222211111 111122
Q ss_pred HHhhhh--HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 007383 402 FINERP--ILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLF 479 (605)
Q Consensus 402 ~~~er~--v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~ 479 (605)
+..+|. ...|=... --++..+.+++++...-..++..++...+.+...|.+.. ....+...+++...+....|.+
T Consensus 84 i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 84 FFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 333331 11111122 347788999999987766666655555554444465543 2223333333333333345888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccCCCccccc
Q 007383 480 LSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQENTTCMVT 559 (605)
Q Consensus 480 i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~~~~c~~~ 559 (605)
++.+.++.+....+..+++.+++..||.+.|.+++|.|++|+.+++|+.|..|++=..-+++
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~------------------ 222 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI------------------ 222 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC------------------
Confidence 88888888888888888899999999999999999999999999999999999876432211
Q ss_pred hhhHhhhcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007383 560 GGDVLQNRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIRRV 600 (605)
Q Consensus 560 g~~~L~~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~~~ 600 (605)
.....|.++++++++.+++..++....|++.
T Consensus 223 ----------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 223 ----------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1112477888898988888887777665443
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.18 E-value=8e-11 Score=123.35 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=98.0
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee-CCcccccCceEEEcCCCC-CCCCCCHHHHHHHHH
Q 007383 59 VSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP-IKPSSFRKLSAYVPQHDA-CIPSLTVYETFLFSA 136 (605)
Q Consensus 59 vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~-~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~ 136 (605)
+++.+++|+.++|.||+|||||||+++|++.+++..|.+.+++.. +... .+..+..+.+... -....|.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~-~~~~~~l~~~~~~~~~~~~~~-------- 207 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLP-HPNYVHLFYSKGGQGLAKVTP-------- 207 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCC-CCCEEEEEecCCCCCcCccCH--------
Confidence 567888999999999999999999999999999988888885321 1100 0112222221100 0001111
Q ss_pred hcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007383 137 RLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSI 216 (605)
Q Consensus 137 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l 216 (605)
.-.+..+|-.+|+++++|||.+ .+..+.++.+
T Consensus 208 -----------------------------------------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~ 239 (308)
T TIGR02788 208 -----------------------------------------KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAV 239 (308)
T ss_pred -----------------------------------------HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHH
Confidence 1124445677999999999996 3456677776
Q ss_pred HhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 217 SASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 217 ~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
. .++.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 240 ~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 240 N-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred h-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 5 34456799999987 46779999999999988888877654
No 447
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.17 E-value=2.1e-10 Score=110.71 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=95.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHH
Q 007383 69 LAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDT 148 (605)
Q Consensus 69 ~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~ 148 (605)
+.|.||+|+|||||.--++-..-. +| +.+.|+.= ..|..+.+.....+ +...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-------~g---------~~v~~~s~------e~~~~~~~~~~~~~-g~~~----- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-------RG---------EPGLYVTL------EESPEELIENAESL-GWDL----- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-------CC---------CcEEEEEC------CCCHHHHHHHHHHc-CCCh-----
Confidence 679999999999987654322100 11 12334431 12444444433222 1111
Q ss_pred HHHHHHHHcCCcccccccccCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhc
Q 007383 149 IITVLLTELRLAHLASTRLAHNLSGGERR------RVSIGLSLLHDPAVLLLDEPTSGLD---SRSAFNVMQTLKSISAS 219 (605)
Q Consensus 149 ~v~~~l~~l~L~~~~~~~~~~~LSgGerq------Rv~ia~aL~~~P~illLDEPtsgLD---~~~~~~i~~~L~~l~~~ 219 (605)
+ -+...|+....+.. +..+|+|++| +.........+|+++++|||++.+| ......+.++++.+++.
T Consensus 54 --~-~l~~~g~l~~~d~~-~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~ 129 (187)
T cd01124 54 --E-RLEDEGLLAIVDAD-PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF 129 (187)
T ss_pred --H-HHHhcCCeEEEecC-ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC
Confidence 1 12233444444444 4789999998 4444555667999999999999999 88888889999998764
Q ss_pred CCcEEEEEeCCCCh--------HHHhcCCeEEEEe
Q 007383 220 RHRTVILSIHQPSF--------KILSTIDRILLLS 246 (605)
Q Consensus 220 ~g~tii~~~H~~~~--------~i~~~~d~v~~l~ 246 (605)
|.|+|+++|+... .+..++|.++.|+
T Consensus 130 -g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 130 -GVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred -CCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 8899999998753 1567889999887
No 448
>PRK13695 putative NTPase; Provisional
Probab=99.16 E-value=2.1e-11 Score=116.98 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEP--TSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEP--tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
..+||+++.+..+.+..+.+|+++++||| +.++|. .+.+.+.++.+ .++++|+++|+. .+...+|++..+.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~~~~ 149 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIKSRP 149 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHhccC
Confidence 56999999999999999999999999995 445554 34566666653 478999999984 3567899999999
Q ss_pred CCeEEEe
Q 007383 247 KGSVVHH 253 (605)
Q Consensus 247 ~G~iv~~ 253 (605)
+|++.+.
T Consensus 150 ~~~i~~~ 156 (174)
T PRK13695 150 GGRVYEL 156 (174)
T ss_pred CcEEEEE
Confidence 9998765
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.12 E-value=3.4e-10 Score=122.25 Aligned_cols=155 Identities=21% Similarity=0.175 Sum_probs=112.1
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++.|.|.+.|+.. .+|.|.+
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg---------------------~ev~e~~ 201 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG---------------------REVKDFI 201 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc---------------------ccHHHHH
Confidence 4688885 99999999999999999999999999999999888777666532 3566654
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLL-------HDPAVLLLDEPTSGLDSR 204 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~-------~~P~illLDEPtsgLD~~ 204 (605)
.... ..-++.+. .-.. ..+-|.|+|+|+..+.+.+ .++-++++||||.+.|+.
T Consensus 202 ~~~l------------------~~~gl~~tvvv~~-tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 202 RKEL------------------GEEGMRKSVVVVA-TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR 262 (432)
T ss_pred HHHh------------------hhcccceeEEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence 4221 11111110 0011 4688999999999998887 789999999999999996
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
.++-..+.+.-. .|.+..+.+|-+ .+.+-+.+ ..+|.|...+..
T Consensus 263 --reisl~~~e~p~-~G~~~~~~s~l~--~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 263 --RSVDIAVKELPI-GGKTLLMESYMK--KLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred --HHHHHHhcCCCC-CCeeeeeeccch--hHHHHhcc---CCCcceEEEEEE
Confidence 566666666654 478888888843 24444443 468887665543
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.12 E-value=1.9e-10 Score=107.47 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=79.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHH
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQID 147 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~ 147 (605)
+++|.||||+||||+++.+++...+..|.+.+- ..+....+ ..+.+. .. .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~----------------~~e~~~~~---~~~~~~---~~------~-- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV----------------DIEEEIEE---LTERLI---GE------S-- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE----------------ECCcchHH---HHHHHh---hh------h--
Confidence 478999999999999999999876655555443 33221110 111110 00 0
Q ss_pred HHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH
Q 007383 148 TIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS----------GLDSRSAFNVMQTLKSIS 217 (605)
Q Consensus 148 ~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPts----------gLD~~~~~~i~~~L~~l~ 217 (605)
.....+. ....... ...-+.++.++...+++...+|+++++|||++ +.|......+.+++...
T Consensus 51 --~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~- 123 (165)
T cd01120 51 --LKGALDN---LIIVFAT-ADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA- 123 (165)
T ss_pred --hcccccc---EEEEEcC-CCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-
Confidence 0000000 0111111 13445666677888888999999999999994 45555566666666555
Q ss_pred hcCCcEEEEEeCCCCh
Q 007383 218 ASRHRTVILSIHQPSF 233 (605)
Q Consensus 218 ~~~g~tii~~~H~~~~ 233 (605)
++.+.|+|+++|..+.
T Consensus 124 ~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 124 RKGGVTVIFTLQVPSG 139 (165)
T ss_pred hcCCceEEEEEecCCc
Confidence 4568999999998864
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.06 E-value=1.9e-09 Score=126.75 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=59.6
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHH---------hcCCeEEEEeCCeEEEecC
Q 007383 186 LHDPAVLLLDEPTSGL-DSRSAFNVMQTLKSISASRHRTVILSIHQPSFKIL---------STIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 186 ~~~P~illLDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~---------~~~d~v~~l~~G~iv~~g~ 255 (605)
..+|+++++|||+.+| |+..+..+.+.++++++. |.+++++||+++. +. +.||+.++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~-~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA-NCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999865 7799999999974 44 6899999999998876664
No 452
>PRK03918 chromosome segregation protein; Provisional
Probab=99.04 E-value=4.2e-10 Score=134.19 Aligned_cols=77 Identities=27% Similarity=0.376 Sum_probs=67.5
Q ss_pred cCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCe
Q 007383 168 AHNLSGGERRR------VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDR 241 (605)
Q Consensus 168 ~~~LSgGerqR------v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~ 241 (605)
+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|..++.. +.+||++||++. +...||+
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CCEEEEEECCHH--HHHhCCe
Confidence 47899999995 55556788999999999999999999999999999998654 679999999974 6789999
Q ss_pred EEEEeC
Q 007383 242 ILLLSK 247 (605)
Q Consensus 242 v~~l~~ 247 (605)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 453
>PRK01156 chromosome segregation protein; Provisional
Probab=99.03 E-value=1.2e-09 Score=130.38 Aligned_cols=77 Identities=29% Similarity=0.391 Sum_probs=66.9
Q ss_pred cCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEeCCCChHHHhcC
Q 007383 168 AHNLSGGERRRVSI------GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASR-H-RTVILSIHQPSFKILSTI 239 (605)
Q Consensus 168 ~~~LSgGerqRv~i------a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~-g-~tii~~~H~~~~~i~~~~ 239 (605)
+..||||||+|++| |++++.+|++++|||||+|||+.....+.++++...+.. + .+||++||++. ..+.|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHhc
Confidence 47899999999976 488999999999999999999999999999998654332 3 48999999986 45899
Q ss_pred CeEEEEe
Q 007383 240 DRILLLS 246 (605)
Q Consensus 240 d~v~~l~ 246 (605)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 454
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.02 E-value=7.9e-10 Score=133.18 Aligned_cols=78 Identities=27% Similarity=0.276 Sum_probs=69.2
Q ss_pred cCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcC
Q 007383 168 AHNLSGGERRRVSIGLSLLH--------DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTI 239 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~--------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 239 (605)
++.|||||++|++||++|+. +|++||+||||+|||+.+...+++.|.++++ .|+||+++||.... ..++.
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l-~~~i~ 1024 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAM-KERIP 1024 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHH-HHhcc
Confidence 58999999999999999996 8999999999999999999999999999976 58999999998763 45566
Q ss_pred CeEEEEeC
Q 007383 240 DRILLLSK 247 (605)
Q Consensus 240 d~v~~l~~ 247 (605)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 77777664
No 455
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.98 E-value=9.5e-09 Score=97.29 Aligned_cols=77 Identities=22% Similarity=0.419 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc-CCeEEEEeC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST-IDRILLLSK 247 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~d~v~~l~~ 247 (605)
+.-|-||-=---+.+. .++--+.+||||-++|.+.-+.+++..|+++++. |.-+|+.||.|- +..+ --+|+-++.
T Consensus 128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPi--LlAiP~A~I~~~~~ 203 (233)
T COG3910 128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPI--LLAIPGAEIYEISE 203 (233)
T ss_pred hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChh--heeCCCcEEEEEec
Confidence 5678888643333333 4577899999999999999999999999999875 789999999984 3333 356676766
Q ss_pred Ce
Q 007383 248 GS 249 (605)
Q Consensus 248 G~ 249 (605)
+-
T Consensus 204 ~g 205 (233)
T COG3910 204 SG 205 (233)
T ss_pred CC
Confidence 54
No 456
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.91 E-value=8.9e-10 Score=118.89 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=47.0
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCeeCC
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG-TILLNSSPIK 105 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G-~I~~~g~~~~ 105 (605)
+.+|++||+++++||+++|+|||||||||||+ +|+..|++| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 788888877 7999999874
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.91 E-value=5.4e-09 Score=102.56 Aligned_cols=119 Identities=24% Similarity=0.358 Sum_probs=74.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHH
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSP-TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQI 146 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 146 (605)
++.|.||+||||||+++.|++...+ ..|.|.....++.. ......+++.|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~~~~~~~~i~q~~v------------------------- 56 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-VHESKRSLINQREV------------------------- 56 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-cccCccceeeeccc-------------------------
Confidence 7899999999999999999888764 45676654443310 00011111111100
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 007383 147 DTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVIL 226 (605)
Q Consensus 147 ~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~ 226 (605)
+.. ...++. +++++|..+|+++++|||. |..+...+++ .+. .|..++.
T Consensus 57 -----------g~~-------~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~----~a~-~G~~v~~ 104 (198)
T cd01131 57 -----------GLD-------TLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT----AAE-TGHLVMS 104 (198)
T ss_pred -----------CCC-------ccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH----HHH-cCCEEEE
Confidence 000 011111 4678888999999999996 6655443333 343 4789999
Q ss_pred EeCCCChHHHhcCCeEEEEe
Q 007383 227 SIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 227 ~~H~~~~~i~~~~d~v~~l~ 246 (605)
|+|.++. .+..||++.+.
T Consensus 105 t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 105 TLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred EecCCcH--HHHHhHHHhhc
Confidence 9999873 56789887664
No 458
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.91 E-value=3.6e-09 Score=115.94 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=94.7
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLF 134 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 134 (605)
++++.+..++.|++++++||||+||||++..|++.+....|. +.++++.+|. ...++.|+|.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~--------------~kV~LI~~Dt---~RigA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA--------------SKVALLTTDS---YRIGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC--------------CeEEEEeCCc---cchhHHHHHHH
Confidence 566777778899999999999999999999999987654442 2478888876 34789999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCCCCCHHHHHH
Q 007383 135 SARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR-RVSIGLSLLHDP-----AVLLLDEPTSGLDSRSAFN 208 (605)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq-Rv~ia~aL~~~P-----~illLDEPtsgLD~~~~~~ 208 (605)
.++.++.+....+...+......++.+..... +.....+++. .+.-..+++.++ .+|+||.++.+ ..
T Consensus 308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VL-IDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~ 380 (484)
T PRK06995 308 YGKILGVPVHAVKDAADLRLALSELRNKHIVL-IDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DT 380 (484)
T ss_pred HHHHhCCCeeccCCchhHHHHHHhccCCCeEE-eCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HH
Confidence 87775432222222233344455665543333 3554434433 233444555555 68999999888 33
Q ss_pred HHHHHHHHHhcCCcEEEEEeC
Q 007383 209 VMQTLKSISASRHRTVILSIH 229 (605)
Q Consensus 209 i~~~L~~l~~~~g~tii~~~H 229 (605)
+.+.++.... .+.+=++.|+
T Consensus 381 l~~i~~~f~~-~~~~g~IlTK 400 (484)
T PRK06995 381 LNEVVQAYRG-PGLAGCILTK 400 (484)
T ss_pred HHHHHHHhcc-CCCCEEEEeC
Confidence 4445555543 2444444444
No 459
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=1.8e-09 Score=133.14 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=62.7
Q ss_pred cCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEeCCCChHHHh
Q 007383 168 AHNLSGGERR------RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISA----SRHRTVILSIHQPSFKILS 237 (605)
Q Consensus 168 ~~~LSgGerq------Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~----~~g~tii~~~H~~~~~i~~ 237 (605)
.+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. ..|.+||++||++.. +..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HHH
Confidence 3789999999 99999999999999999999999999999999999988742 247899999999874 666
Q ss_pred cC
Q 007383 238 TI 239 (605)
Q Consensus 238 ~~ 239 (605)
++
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 54
No 460
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.89 E-value=8.4e-09 Score=104.14 Aligned_cols=137 Identities=22% Similarity=0.344 Sum_probs=84.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC-eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChh
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS-SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTS 144 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g-~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 144 (605)
|++..|.||+|+|||||.--++--. ..|.=.+.+ .... -...+-|+.=++ +.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v--a~G~~~~g~~~~~~---~~~~Vlyi~~Ed---------------------~~~ 54 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM--ALGKNLFGGGLKVT---EPGRVVYLSAED---------------------PRE 54 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH--hcCccccCCccccC---CCceEEEEECCC---------------------CHH
Confidence 6788999999999999988776321 112111110 1000 012233443221 112
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC------CCC
Q 007383 145 QIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGL----------------SLLHDPAVLLLDEPTS------GLD 202 (605)
Q Consensus 145 ~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~----------------aL~~~P~illLDEPts------gLD 202 (605)
+..+++..+...+++.+..++.. ..+|+.|++.+++ ....+|+++++| |++ .+|
T Consensus 55 ~i~~Rl~~i~~~~~~~~~~~rl~---~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d 130 (239)
T cd01125 55 EIHRRLEAILQHLEPDDAGDRLF---IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSEND 130 (239)
T ss_pred HHHHHHHHHHhhcCCcCcccceE---EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCC
Confidence 33445555666555544333222 2245555555443 335799999999 765 479
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 203 SRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 203 ~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
+.....+++.|++++++.|.|||+++|...
T Consensus 131 ~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 131 NGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 999999999999999888999999999874
No 461
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.89 E-value=2.6e-07 Score=93.92 Aligned_cols=169 Identities=21% Similarity=0.304 Sum_probs=125.4
Q ss_pred hhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 007383 405 ERPILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFLS-SL 483 (605)
Q Consensus 405 er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~-~~ 483 (605)
++..+.|=..+...+ ..+++++.+...-...+...+...++.+..| ......+..+..++.+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433 5667777777776666666666666666667 33344566666777777888888888666 36
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCCCcccccccccCCCccccchhhH
Q 007383 484 APNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQENTTCMVTGGDV 563 (605)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~~~~~c~~~g~~~ 563 (605)
..+.+.+..+...+..++..++|.+.|.+.+|.|++|+.++.|.+|+.+++-.....+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------------------- 253 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------------------- 253 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc--------------------
Confidence 677777888888888899999999999999999999999999999999998866554322
Q ss_pred hhhcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007383 564 LQNRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIRRVSK 602 (605)
Q Consensus 564 L~~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~~~~~ 602 (605)
..+.|.++++++++.+++.+++...++++.+.
T Consensus 254 -------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 -------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 01167889999999999999998888876653
No 462
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.85 E-value=3.2e-09 Score=130.00 Aligned_cols=75 Identities=23% Similarity=0.326 Sum_probs=66.9
Q ss_pred cCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE
Q 007383 168 AHNLSGGERRRVSIGLSLL----HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~ 243 (605)
+..||||||+|++||++++ .+|++++|||||+|||+.+...+.++|+++++ +.+||++||++. ....||+++
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhhHe
Confidence 5799999999999999984 67799999999999999999999999999864 468999999987 357899998
Q ss_pred EEe
Q 007383 244 LLS 246 (605)
Q Consensus 244 ~l~ 246 (605)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 765
No 463
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.85 E-value=2.6e-08 Score=100.21 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=95.7
Q ss_pred eeeee-eEEEeCCeEEEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 55 ILKNV-SLTAYPSQILAIVGPSGAGKSTLLDILSA-RTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 55 iL~~v-s~~i~~Ge~~ailG~nGaGKTTLL~~l~g-~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
-|+.+ .+=+++|.++.|.|++|+|||||...++- ..+ .. ..+.|+..+. +..+.+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g----------------~~~~y~~~e~------~~~~~~ 69 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QG----------------KKVYVITTEN------TSKSYL 69 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CC----------------CEEEEEEcCC------CHHHHH
Confidence 45554 55689999999999999999999988752 111 11 2244554422 233332
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLH--DPAVLLLDEPTSG---LDSRSAF 207 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~--~P~illLDEPtsg---LD~~~~~ 207 (605)
.-..++ +..-.+ ...+.. +.+.+..-.. ....|.++++.+.....++. +|+++++||||+. .|.....
T Consensus 70 ~~~~~~-g~~~~~--~~~~g~---l~i~~~~~~~-~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~ 142 (234)
T PRK06067 70 KQMESV-KIDISD--FFLWGY---LRIFPLNTEG-FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDIL 142 (234)
T ss_pred HHHHHC-CCChhH--HHhCCC---ceEEeccccc-cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHH
Confidence 222111 110000 000000 0110100011 13456788999999999997 9999999999964 5555555
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCChH------HHhcCCeEEEEe
Q 007383 208 NVMQTLKSISASRHRTVILSIHQPSFK------ILSTIDRILLLS 246 (605)
Q Consensus 208 ~i~~~L~~l~~~~g~tii~~~H~~~~~------i~~~~d~v~~l~ 246 (605)
.+++.++.+++ .|.|+++++|+.... +..++|.++.|+
T Consensus 143 ~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 143 NFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 66666777665 478999999987531 345667777675
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.83 E-value=1.4e-07 Score=84.63 Aligned_cols=119 Identities=29% Similarity=0.420 Sum_probs=79.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCc-cEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCh
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTSPTN-GTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKT 143 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~-G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 143 (605)
++..+.|.||+|+||||+++.|+....... +-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEV------------------LDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccC------------------HHHHH------------
Confidence 367899999999999999999999987644 44444443321100 00000
Q ss_pred hHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----HHHHHHh
Q 007383 144 SQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ-----TLKSISA 218 (605)
Q Consensus 144 ~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-----~L~~l~~ 218 (605)
....... .....+++..+..+.++--.+|+++++||+..-.+......... .......
T Consensus 51 ----------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (148)
T smart00382 51 ----------------LIIVGGK-KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS 113 (148)
T ss_pred ----------------hhhhhcc-CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh
Confidence 0000111 24567777888777777777799999999999999998887765 2233333
Q ss_pred cCCcEEEEEeCC
Q 007383 219 SRHRTVILSIHQ 230 (605)
Q Consensus 219 ~~g~tii~~~H~ 230 (605)
..+..+|+++|.
T Consensus 114 ~~~~~~i~~~~~ 125 (148)
T smart00382 114 EKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEEeCC
Confidence 457789999983
No 465
>PRK02224 chromosome segregation protein; Provisional
Probab=98.78 E-value=1.3e-08 Score=121.53 Aligned_cols=78 Identities=29% Similarity=0.444 Sum_probs=66.8
Q ss_pred cCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHH
Q 007383 168 AHNLSGGERR------RVSIGLSLLHD-----P-AVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKI 235 (605)
Q Consensus 168 ~~~LSgGerq------Rv~ia~aL~~~-----P-~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i 235 (605)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.++|+++++.+..+||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4689999999 89999888863 3 6799999999999999999999999997542348999999986 3
Q ss_pred HhcCCeEEEEeC
Q 007383 236 LSTIDRILLLSK 247 (605)
Q Consensus 236 ~~~~d~v~~l~~ 247 (605)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999974
No 466
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.76 E-value=1.2e-08 Score=125.13 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=67.9
Q ss_pred cCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE
Q 007383 168 AHNLSGGERRRVSIGLSLLH----DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~ 243 (605)
+..||||||++++||++++. +|++++||||++|||+.....+.++|+++++ +..+|++||++. ....||+++
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHH--HHHhcceeE
Confidence 46899999999999999985 6799999999999999999999999999864 468999999985 578999998
Q ss_pred EEeC
Q 007383 244 LLSK 247 (605)
Q Consensus 244 ~l~~ 247 (605)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8763
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.74 E-value=2.8e-08 Score=96.51 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=62.8
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCC--CCCCCCCHHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHD--ACIPSLTVYETF 132 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~e~l 132 (605)
..+=+.+.+++|+.++|+||||||||||+++|+|+.+++.|.|.+++..-.....+..++++.|.+ ...+..|+.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 445556678999999999999999999999999999999999999874321112234466665543 345678888888
Q ss_pred HHHHhc
Q 007383 133 LFSARL 138 (605)
Q Consensus 133 ~~~~~~ 138 (605)
....+.
T Consensus 94 ~~~lR~ 99 (186)
T cd01130 94 RSALRM 99 (186)
T ss_pred HHHhcc
Confidence 776554
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.72 E-value=1.8e-07 Score=102.03 Aligned_cols=176 Identities=20% Similarity=0.212 Sum_probs=112.6
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-----------ccccCceEEEcCCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-----------SSFRKLSAYVPQHD 120 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-----------~~~~~~i~yv~Q~~ 120 (605)
...+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|+.-.. ..+++.+.++.+-+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 35689999 9999999999999999999999999999999988888776664321 11223333443322
Q ss_pred CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH-HHHhhCCCEEEEeCC--
Q 007383 121 ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG-LSLLHDPAVLLLDEP-- 197 (605)
Q Consensus 121 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia-~aL~~~P~illLDEP-- 197 (605)
. ++.+-..-+ ..--.+.+.+...|-+-.. +..+++- .+=| |++. +.+.||
T Consensus 229 ~-----~p~~r~~~~---------~~a~t~AE~frd~G~~Vll---~~DslTr-----~A~A~REis-----l~~ge~P~ 281 (440)
T TIGR01026 229 Q-----SPLLRLKGA---------YVATAIAEYFRDQGKDVLL---LMDSVTR-----FAMAQREIG-----LAAGEPPA 281 (440)
T ss_pred C-----CHHHHHHHH---------HHHHHHHHHHHHCCCCEEE---EEeChHH-----HHHHHHHHH-----HhcCCCCc
Confidence 2 222211100 0111233333333432110 0122221 1111 1111 345675
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCc-------EEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 198 TSGLDSRSAFNVMQTLKSISASRHR-------TVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 198 tsgLD~~~~~~i~~~L~~l~~~~g~-------tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+.|+|+.....+-+++.+... .+. ||++.+||.. ..++|++.-+.+|+++.++..++.
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGA-SGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred ccccChhHHHHHHHHHHHhcc-CCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 459999999999999999874 467 8888999975 357899999999999998876543
No 469
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.66 E-value=4.6e-07 Score=85.12 Aligned_cols=129 Identities=13% Similarity=0.032 Sum_probs=93.8
Q ss_pred hhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 007383 404 NERPILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQ--AFAYFVLVIWVIILMANSFVLFLS 481 (605)
Q Consensus 404 ~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~--~f~~f~~~~~l~~~~~~~~~~~i~ 481 (605)
.|+.++.|-+..-. +++.|+++|++...-..++..++..++.+. .|.+.... ..+.++++..+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46668888887777 788999999999998888888777776654 48776531 122222233333444455555665
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHH
Q 007383 482 SLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALL 535 (605)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~ 535 (605)
...++.+. .....++..|+++.||.+.|.+++|.|++|+.+++|++|+.+++=
T Consensus 94 ~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 55566543 334466677888999999999999999999999999999999874
No 470
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.61 E-value=5.2e-07 Score=106.78 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=54.4
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHh--cCCeEEEEeCCeEE
Q 007383 181 IGLSLLHDPAVLLLDEPTSGL-DSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILS--TIDRILLLSKGSVV 251 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~--~~d~v~~l~~G~iv 251 (605)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++. |.+++++||+++. +.+ .++.++-....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~-g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA-NCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 567788999999999999999 799999999999999875 7799999999974 554 33444444444444
No 471
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=1.2e-07 Score=102.94 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=66.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC-
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS- 101 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g- 101 (605)
.++.++++..+. ....+++.++ .+.+||.++|+||||+|||||+++|+++.+|+.|.|.+.|
T Consensus 139 ~~~r~~v~~~l~----------------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGe 201 (450)
T PRK06002 139 AMTRARVETGLR----------------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGE 201 (450)
T ss_pred CeEeecceEEcC----------------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeeccc
Confidence 478888888773 2367889996 9999999999999999999999999999999999998865
Q ss_pred --eeCC---c----ccccCceEEEcCCCC
Q 007383 102 --SPIK---P----SSFRKLSAYVPQHDA 121 (605)
Q Consensus 102 --~~~~---~----~~~~~~i~yv~Q~~~ 121 (605)
+++. . ...++.+++|+|.+.
T Consensus 202 rgrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 202 RGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 4432 1 123467999999774
No 472
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=5.1e-08 Score=105.61 Aligned_cols=174 Identities=20% Similarity=0.209 Sum_probs=109.0
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCeeCCc---------ccccCceEEEcCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTN---GTILLNSSPIKP---------SSFRKLSAYVPQH 119 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~---G~I~~~g~~~~~---------~~~~~~i~yv~Q~ 119 (605)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|-.+|.++.. ...+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46699999 9999999999999999999999999999998865 444444444321 1124468999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCC--
Q 007383 120 DACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEP-- 197 (605)
Q Consensus 120 ~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEP-- 197 (605)
+..+..+++.|++...+..+....+ .|--+++ .++..+.. .+++| +.+.||
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~----~Vll~~D--sltr~a~A--~REis-------------------l~~ge~P~ 273 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGH----DVLLLVD--SLTRYAMA--QREIA-------------------LSLGEPPA 273 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccC----CEEEeec--chhHHHhh--hhHHH-------------------HhcCCCCc
Confidence 9999999999999887765321100 0000000 01111100 01111 122344
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCChHHH-hcCCeEEEEeCCeEEEe
Q 007383 198 TSGLDSRSAFNVMQTLKSISAS---RHRTVILSIHQPSFKIL-STIDRILLLSKGSVVHH 253 (605)
Q Consensus 198 tsgLD~~~~~~i~~~L~~l~~~---~g~tii~~~H~~~~~i~-~~~d~v~~l~~G~iv~~ 253 (605)
+.|-.+..-..+-+++.+..+. +..|.+.+..-+..++. -.+|.+.-+-||+|+..
T Consensus 274 ~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 274 TKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred ccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 3367777777777777775322 23466666654433332 25788888889999864
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.60 E-value=1.2e-08 Score=113.36 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=103.3
Q ss_pred eeeeee-eEEEeCCeEEEEECCCCCcHHHHHHHH--hCCCCCCccEEEECCeeCCccccc---CceEEEcCCCCCCCCCC
Q 007383 54 YILKNV-SLTAYPSQILAIVGPSGAGKSTLLDIL--SARTSPTNGTILLNSSPIKPSSFR---KLSAYVPQHDACIPSLT 127 (605)
Q Consensus 54 ~iL~~v-s~~i~~Ge~~ailG~nGaGKTTLL~~l--~g~~~~~~G~I~~~g~~~~~~~~~---~~i~yv~Q~~~l~~~lT 127 (605)
.-|+.+ .+=+.+|..+.|.||+|||||||..-. .|..+..+.-+++..+.. +.+++ +..|+-.++..--.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~g--- 83 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-PQDIIKNARSFGWDLQKLVDEG--- 83 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhcC---
Confidence 346665 567899999999999999999998866 455544455566655432 22222 12333322110000
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 007383 128 VYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIG--LSLLHDPAVLLLDEPTSGLDSRS 205 (605)
Q Consensus 128 v~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia--~aL~~~P~illLDEPtsgLD~~~ 205 (605)
++.+ ..... ......+++.+++.+..+.. ...+|+|++|||.|+ .++..+|+.. ...
T Consensus 84 ---~l~~----~~~~~---~~~~~~~~~~~~l~~~l~~i-~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~ 142 (484)
T TIGR02655 84 ---KLFI----LDASP---DPEGQDVVGGFDLSALIERI-NYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVV 142 (484)
T ss_pred ---ceEE----EecCc---hhccccccccCCHHHHHHHH-HHHHHHhCCcEEEEeehhHhhhhcCch----------HHH
Confidence 0000 00000 00111234555666655555 488999999999999 6666665543 467
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCChH-------H-HhcCCeEEEEe
Q 007383 206 AFNVMQTLKSISASRHRTVILSIHQPSFK-------I-LSTIDRILLLS 246 (605)
Q Consensus 206 ~~~i~~~L~~l~~~~g~tii~~~H~~~~~-------i-~~~~d~v~~l~ 246 (605)
++.+.++++.+++ .|+|+|+++|+++.. + ..++|.|+.|+
T Consensus 143 r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 143 RREIFRLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 7889999999875 589999999987520 1 45789999887
No 474
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.58 E-value=1.2e-08 Score=102.03 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=34.3
Q ss_pred eeeee-eEEEeCCeEEEEECCCCCcHHHHHHHHh--CCCCCCccEEEECCe
Q 007383 55 ILKNV-SLTAYPSQILAIVGPSGAGKSTLLDILS--ARTSPTNGTILLNSS 102 (605)
Q Consensus 55 iL~~v-s~~i~~Ge~~ailG~nGaGKTTLL~~l~--g~~~~~~G~I~~~g~ 102 (605)
-|+++ .+=+++|++++|.||+|+|||||...++ +. .+.++-+++..+
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e 57 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTE 57 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEcc
Confidence 45553 4668999999999999999999988654 33 334455666553
No 475
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=9.6e-08 Score=102.34 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 170 NLSGGERRRVSIGLSLLH---------DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~---------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|.+. |.+|++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999999753 569999999875
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.56 E-value=5e-08 Score=95.50 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=67.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHH
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQID 147 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~ 147 (605)
+++|.||||||||||.+.|++.+ ..|.+ .++++|+.. ..++..+...........+.....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~----------------~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV----------------VIISQDSYY-KDLSHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe----------------EEEEecccc-cccccccHHHhccCCCCCCCcccH
Confidence 58999999999999999999987 22323 333443322 122333322211111111111112
Q ss_pred HHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007383 148 TIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS 203 (605)
Q Consensus 148 ~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~ 203 (605)
+...+.++.+...+..+.+. ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~-~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPV-YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHHCCCCEeccc-cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 23445566665544444443 6788888776555 5678999999999999886
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.56 E-value=1.1e-07 Score=112.06 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=89.0
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
..|-+|+++. +.+.++.|.|||++||||+||.++-..- +.+.-+|||-+..- +++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-----------------lAq~G~~VPa~~a~---i~~~d~- 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-----------------LAQIGSFVPAESAR---IGIVDR- 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-----------------HHhcCCceeccceE---ecccCe-
Confidence 4577888888 7788999999999999999999864310 11112344433211 111111
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCC---CCCCCHHHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEP---TSGLDSRSAF 207 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEP---tsgLD~~~~~ 207 (605)
+...+|- .|.. ..+.|.-+.....++..|- ++++++++||| |+.+|..+
T Consensus 653 --------------------I~triga---~d~i-~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a-- 706 (854)
T PRK05399 653 --------------------IFTRIGA---SDDL-ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS-- 706 (854)
T ss_pred --------------------eeeccCc---cccc-ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--
Confidence 1112221 1222 3677777666666666664 49999999999 88888443
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCe
Q 007383 208 NVMQTLKSISASRHRTVILSIHQPSFKILSTIDR 241 (605)
Q Consensus 208 ~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~ 241 (605)
....+++.+.+..+.+++++||.. ++.+++++
T Consensus 707 ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 707 IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 345566666655468999999995 46777764
No 478
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.55 E-value=3.7e-07 Score=97.21 Aligned_cols=123 Identities=26% Similarity=0.392 Sum_probs=77.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP 141 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~ 141 (605)
..++.++.|.||+||||||+++.+.+.+++ ..|.|.....++... .....+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLINQRE--------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEEccc---------------------
Confidence 357889999999999999999999987653 466666544433210 000001111100
Q ss_pred ChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007383 142 KTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRH 221 (605)
Q Consensus 142 ~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g 221 (605)
.|. ...+ -.-+++.+|-.+|+++++||+. |+.++...++ .+ ..|
T Consensus 177 ---------------vg~---------~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa-~tG 220 (343)
T TIGR01420 177 ---------------VGL---------DTLS----FANALRAALREDPDVILIGEMR---DLETVELALT----AA-ETG 220 (343)
T ss_pred ---------------cCC---------CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-HcC
Confidence 000 0000 1123556788899999999997 8888765554 23 358
Q ss_pred cEEEEEeCCCChHHHhcCCeEEEE
Q 007383 222 RTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 222 ~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
.+|+.|+|..+ .....+|++-|
T Consensus 221 h~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 221 HLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred CcEEEEEcCCC--HHHHHHHHHHh
Confidence 89999999976 34667777654
No 479
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.41 E-value=7.5e-07 Score=106.53 Aligned_cols=77 Identities=29% Similarity=0.391 Sum_probs=68.7
Q ss_pred cCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcC
Q 007383 168 AHNLSGGERRRVSIGLSLL------HD--PAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTI 239 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~------~~--P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 239 (605)
+..|||||+-.++||.+|+ .+ -+.|||||||..||+.+...+++.|..+... +.+|++|||+.. ..+.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~ee--l~e~~ 889 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEE--LKERA 889 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHH--HHHhC
Confidence 5899999999998888775 35 6999999999999999999999999999864 899999999974 67899
Q ss_pred CeEEEEeC
Q 007383 240 DRILLLSK 247 (605)
Q Consensus 240 d~v~~l~~ 247 (605)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999875
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.38 E-value=2.1e-07 Score=89.55 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=47.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc-cccC-ceEEEcCCCCCCCCCCHHHHHHHH
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS-SFRK-LSAYVPQHDACIPSLTVYETFLFS 135 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~-~~~~-~i~yv~Q~~~l~~~lTv~e~l~~~ 135 (605)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... ..++ ..|+.+|+....+..++.++..+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999999876 57888776421 1222 346666665544555666655543
No 481
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.34 E-value=3.4e-06 Score=86.59 Aligned_cols=161 Identities=12% Similarity=0.101 Sum_probs=85.8
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCeeCCccccc-CceEEEcCCCCCCCCCCHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT-NGTILLNSSPIKPSSFR-KLSAYVPQHDACIPSLTVY 129 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~-~~i~yv~Q~~~l~~~lTv~ 129 (605)
....|+++.+-+.+|+++.|.|++|+|||||+..++...... ...|.+-..+.+...+. +..+.....+...+. +
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~-~-- 92 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPD-T-- 92 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcccCC-c--
Confidence 345789988899999999999999999999999887554222 22332222111111111 000000000000000 0
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHcC---CcccccccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH-
Q 007383 130 ETFLFSARLLVPKTSQIDTIITVLLTELR---LAHLASTRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEPTSGLDS- 203 (605)
Q Consensus 130 e~l~~~~~~~~~~~~~~~~~v~~~l~~l~---L~~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEPtsgLD~- 203 (605)
......++++++++.+. .-...+. ....+ ..+-+..++.++ .+|+++++|..+.-.+.
T Consensus 93 ------------~~~~~~~~~~~~~~~~~~~~~l~i~d~--~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~ 156 (271)
T cd01122 93 ------------VFIYTLEEFDAAFDEFEGTGRLFMYDS--FGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDE 156 (271)
T ss_pred ------------cccccHHHHHHHHHHhcCCCcEEEEcC--CCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccC
Confidence 00011222333333331 1111111 11112 234445555554 37999999998764432
Q ss_pred ------H-HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 007383 204 ------R-SAFNVMQTLKSISASRHRTVILSIHQP 231 (605)
Q Consensus 204 ------~-~~~~i~~~L~~l~~~~g~tii~~~H~~ 231 (605)
. ...+++..|++++++.+.||++++|-.
T Consensus 157 ~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 157 RASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 1 245677889999888899999999854
No 482
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.33 E-value=9e-06 Score=96.05 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=42.6
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCh
Q 007383 185 LLHDPAVLLLDEPTSGLD-SRSAFNVMQTLKSISASRHRTVILSIHQPSF 233 (605)
Q Consensus 185 L~~~P~illLDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 233 (605)
+..+|.++++|||...|| +..+..+.+.++.+++. |..++++||+++.
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~d 687 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKL-NTFVIFATQSVED 687 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence 456899999999999999 88999999999999765 6799999999863
No 483
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=0.00039 Score=71.18 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHHHHHhcChhHHHHHH-----HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 007383 326 SRLQEVCTLYNRFWKIIYRTRQLLLTNT-----LEALIVGLVLGTIFINVGYDKQGIENRFGLFAFTLTFLLSSTTETLP 400 (605)
Q Consensus 326 ~~~~q~~~l~~R~~~~~~Rd~~~~~~r~-----~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~i~ 400 (605)
..++....|.+|..+..+|+........ .+.++++++.|.+.-.-+.+ --..--.|.+.+.. ...+...+..
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~-~~~~l~~G~~~w~f--~~~~i~~~~~ 91 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLN-FLAYLLAGLILWFF--FSEAISEGAG 91 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHH--HHHHHHhHHH
Confidence 3566788899999999999987654433 33444444555444322111 01111122221111 1111112233
Q ss_pred HHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007383 401 IFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAVAIIYSVSVYFLVGLCASWQAFAYFVLVIWVIILMANSFVLFL 480 (605)
Q Consensus 401 ~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i 480 (605)
.+.+...++.|-+ .++..+.+++++.++-...+..++....+-+.-+.+ ..++..+...+.+..+.+.++|+++
T Consensus 92 s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 92 SVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred HhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554322 278899999999998776666655555444444433 3455666666777788888889998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCccchhhhhcccHHHHHHHHHHHHHhCC
Q 007383 481 SSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSMPKYWLFMHFFSMYKYALDALLINEYSC 541 (605)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~W~~yiSp~~Y~~~al~~nef~~ 541 (605)
|+++....--..+.+.++-+++..+|.+-+.+++|..++|+.++||+.+-.|.+=..-+++
T Consensus 166 a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 166 ASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 8887666544455666777889999999999999999999999999999999877665554
No 484
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.31 E-value=0.00048 Score=69.73 Aligned_cols=218 Identities=16% Similarity=0.176 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhcC----CCChhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q 007383 332 CTLYNRFWKIIYRTRQLLLTNTLEALIVGLVLGTIFINV----GYDKQGIENRFGLFAFTLTFLLSSTTETLPIFINERP 407 (605)
Q Consensus 332 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~----~~~~~~~~~~~g~lf~~~~~~~~~~~~~i~~~~~er~ 407 (605)
+.+.+|.++.+.|.|..+..-.+..++.|+.. ..|.+. ..+..+.+.-.+...+ .+......-++ .
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~l~~-------~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPAITM-------R 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHHHHH-------H
Confidence 46789999999999998877776666666442 222111 1111222211111100 11111111112 3
Q ss_pred HHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHHhhhhhcccc---cccHHHHHHHHHHHHHHHHHH
Q 007383 408 ILLRETSSGVY--------RLSSYLIANTLVFLPYLLAVAI---IYSVSVYFLVGL---CASWQAFAYFVLVIWVIILMA 473 (605)
Q Consensus 408 v~~rE~~~g~Y--------~~~~y~la~~l~~lP~~~~~~~---if~~i~Y~~~gl---~~~~~~f~~f~~~~~l~~~~~ 473 (605)
.+.+||++|.. +...+.++|.++-.-..++..+ ++....++. |. ..+...++...+..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQL-GNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHHH
Confidence 45666666653 5678899999988655443322 222222222 22 224555555555666777788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCC--ccchhhhhcccHHHHHHHHHHHHHhCCCccccccccc
Q 007383 474 NSFVLFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFIKKDSM--PKYWLFMHFFSMYKYALDALLINEYSCLASKCLLWYQ 551 (605)
Q Consensus 474 ~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~i--p~~~~W~~yiSp~~Y~~~al~~nef~~~~~~C~~~~~ 551 (605)
.++|.++|+++.+...|..+..... +.++.|+.. ..++ |.+.+|+.|+||..|-.+.. .+ ..
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~--~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g-~i------- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLC--FLFYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-----RG-VI------- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHH--HHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----cC-cc-------
Confidence 8999999999999888765443322 223333221 2333 78889999999987743322 11 00
Q ss_pred CCCccccchhhHhhhcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007383 552 ENTTCMVTGGDVLQNRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIR 598 (605)
Q Consensus 552 ~~~~c~~~g~~~L~~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~ 598 (605)
.|.++...+.+++++..++...++.
T Consensus 215 ----------------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 ----------------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred ----------------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1456777777777777776665543
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.28 E-value=2e-06 Score=105.46 Aligned_cols=162 Identities=19% Similarity=0.322 Sum_probs=88.8
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHh
Q 007383 59 VSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSAR 137 (605)
Q Consensus 59 vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 137 (605)
+++..+++++++|+|++|+|||||++.+++.... .+|.+++++..+... .. .+-.++... .+....
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~~-- 266 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKLH-- 266 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc--hh--hcccccccc-------cchhHH--
Confidence 4567788999999999999999999999776644 689998875322110 00 010110000 000000
Q ss_pred cCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007383 138 LLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSIS 217 (605)
Q Consensus 138 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~ 217 (605)
-.++.+.++++..++ .+ ..+ ++.|+| |..++-+|+||+- |... .++.|....
T Consensus 267 -------l~~~~l~~il~~~~~------~~-~~~-~~~~~~------L~~krvLLVLDdv----~~~~---~l~~L~~~~ 318 (1153)
T PLN03210 267 -------LQRAFLSEILDKKDI------KI-YHL-GAMEER------LKHRKVLIFIDDL----DDQD---VLDALAGQT 318 (1153)
T ss_pred -------HHHHHHHHHhCCCCc------cc-CCH-HHHHHH------HhCCeEEEEEeCC----CCHH---HHHHHHhhC
Confidence 012223334433333 11 222 566666 3355567889984 4333 344444332
Q ss_pred h--cCCcEEEEEeCCCChHHHhc-CCeEEEEeCCeEEEecChhhHHHHHHhCCC
Q 007383 218 A--SRHRTVILSIHQPSFKILST-IDRILLLSKGSVVHHGTLASLETFLLSSGF 268 (605)
Q Consensus 218 ~--~~g~tii~~~H~~~~~i~~~-~d~v~~l~~G~iv~~g~~~~~~~~~~~~g~ 268 (605)
+ ..|.+||+|||+... +... +|+++.+.. -+.++..+.|....+
T Consensus 319 ~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 319 QWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred ccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 2 247899999999763 3333 577665531 133556666665554
No 486
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.28 E-value=1.1e-06 Score=108.60 Aligned_cols=60 Identities=23% Similarity=0.419 Sum_probs=52.7
Q ss_pred cCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 007383 168 AHNLSGGERRRVS----IGLS--------LLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQP 231 (605)
Q Consensus 168 ~~~LSgGerqRv~----ia~a--------L~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 231 (605)
.++||||||||+. +|++ +..+|++++|||||+|||+.+...+++++.++ +.++|++||..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 4899999999996 5644 45899999999999999999999999999987 57899999873
No 487
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.26 E-value=2e-06 Score=80.20 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCcc-cccccccCCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007383 148 TIITVLLTELRLAH-LASTRLAHNLSGGERRRVSIGLSL-----LHDPAVLLLDEPTSGLDSRSAFNVMQTLKSI 216 (605)
Q Consensus 148 ~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqRv~ia~aL-----~~~P~illLDEPtsgLD~~~~~~i~~~L~~l 216 (605)
..+.+.++..+..- ...++. ..++++++++.....+. ...|+++ |+|++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~-D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKA-DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEch-hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34455666655321 123342 66789988887666553 2345555 99999999999999888764
No 488
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.24 E-value=2.3e-06 Score=94.23 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=85.2
Q ss_pred eeeee-eEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 55 ILKNV-SLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI-LLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 55 iL~~v-s~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I-~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
-|+.+ .+=+.+|+++.|.|++|+|||||+..++.......+.+ ++.+++. ..+ +
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-----------------------~~q-i 137 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-----------------------LQQ-I 137 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-----------------------HHH-H
Confidence 35555 35689999999999999999999999887654433333 3344321 111 1
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHH-hhCCCEEEEeCCCCCC---------C
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSL-LHDPAVLLLDEPTSGL---------D 202 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL-~~~P~illLDEPtsgL---------D 202 (605)
..-+ +.+|+... +-.+..+.+-.+ |..++ -.+|+++++|.-++=. +
T Consensus 138 ~~ra------------------~rlg~~~~-~l~~~~e~~~~~-----I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~ 193 (454)
T TIGR00416 138 KMRA------------------IRLGLPEP-NLYVLSETNWEQ-----ICANIEEENPQACVIDSIQTLYSPDISSAPGS 193 (454)
T ss_pred HHHH------------------HHcCCChH-HeEEcCCCCHHH-----HHHHHHhcCCcEEEEecchhhcccccccCCCC
Confidence 0000 00111000 000001111110 11111 1479999999876521 1
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCh-------HHHhcCCeEEEEeCCe
Q 007383 203 SRSAFNVMQTLKSISASRHRTVILSIHQPSF-------KILSTIDRILLLSKGS 249 (605)
Q Consensus 203 ~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~-------~i~~~~d~v~~l~~G~ 249 (605)
....++++..|.+++++.|.|++++.|.... .+..++|.|+.|+.++
T Consensus 194 ~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 194 VSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 2345667778888888889999999996542 1456899999998654
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.22 E-value=3.5e-06 Score=96.21 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=72.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCcc--------EEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHH
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTSPTNG--------TILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSA 136 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G--------~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 136 (605)
..+.++|+||||+|||||.+++.+..++..| -|.+||..+.. ..+. + ++-.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcC-
Confidence 3457999999999999999999988765433 35555543310 0000 0 011111
Q ss_pred hcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007383 137 RLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKS 215 (605)
Q Consensus 137 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 215 (605)
...+...+...+.++..|+.+..+..+ ..+||| +||||| +..||+..+..+.+.|++
T Consensus 235 ----~~~~~~~~~a~~~l~~~gl~~~~~g~v-~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 235 ----SVHDPIYQGARRDLAETGVPEPKTGLV-TDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred ----CccHHHHHHHHHHHHHcCCCchhcCch-hhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 111112233455677888877666664 788988 999999 799999999999888875
No 490
>PRK01889 GTPase RsgA; Reviewed
Probab=98.21 E-value=1.6e-06 Score=92.66 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=59.5
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHH
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFL 133 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (605)
++.+.-.+++|+.++|+|+||+|||||+|.|+|..++..|+|.+++........++.+++++|+..++++ ....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 4445556789999999999999999999999999999999999987543223345678999998877764 3444443
No 491
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.19 E-value=7.8e-07 Score=86.25 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007383 148 TIITVLLTELRLA-HLASTRLAHNLSGGERRRVS--IGLSLLH-DPAVLLLDEPTSGLDSRSAFNVMQTLKSISAS 219 (605)
Q Consensus 148 ~~v~~~l~~l~L~-~~~~~~~~~~LSgGerqRv~--ia~aL~~-~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~ 219 (605)
..+.+.++..++. -...++. ..+|+||++++. +.+.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 125 ~~i~~~l~~~~~~~iiv~nK~-Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 125 LQMIEWLKEYGIPVLIVLTKA-DKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHcCCcEEEEEECc-ccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445566666653 2223443 678999999987 5454433 3444 399999999999999999988754
No 492
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.15 E-value=4.3e-05 Score=77.02 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=34.6
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEeCCCC
Q 007383 186 LHDPAVLLLDEPTSGLDSRSAFNVM-QTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 186 ~~~P~illLDEPtsgLD~~~~~~i~-~~L~~l~~~~g~tii~~~H~~~ 232 (605)
+.+-.++|+||+..|=++.....+. ..++.+.++.+..++++||..+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 4466789999999999999988775 4556666534788999999975
No 493
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.15 E-value=2.4e-06 Score=67.26 Aligned_cols=37 Identities=32% Similarity=0.539 Sum_probs=29.9
Q ss_pred eeeeeEEEeC-CeEEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 56 LKNVSLTAYP-SQILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 56 L~~vs~~i~~-Ge~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
.++.++++.+ |+++.|.||||||||||+++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4456677776 579999999999999999999766544
No 494
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.15 E-value=6.6e-06 Score=74.50 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEeCCCC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISA----SRHRTVILSIHQPS 232 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~----~~g~tii~~~H~~~ 232 (605)
++..........++.++++||.-.. ++.....+.+.+..... ..+.++|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444455566778999999998765 66677788888888753 24678899988654
No 495
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.15 E-value=4.8e-06 Score=90.65 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=70.6
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECC---eeCC---cccc---cCceEEE-----
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLNS---SPIK---PSSF---RKLSAYV----- 116 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~g---~~~~---~~~~---~~~i~yv----- 116 (605)
...+++++ +.+.+||.++|+|+||+|||||+++|+|..+. +.|.|.+.| +++. ...+ ....+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 35689998 99999999999999999999999999999854 457777755 4331 1111 1234455
Q ss_pred cCCCC--CCCCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHcCCc
Q 007383 117 PQHDA--CIPSLTVYETFLFSARLLVP---KTSQIDTIITVLLTELRLA 160 (605)
Q Consensus 117 ~Q~~~--l~~~lTv~e~l~~~~~~~~~---~~~~~~~~v~~~l~~l~L~ 160 (605)
+|++. +.+.+ +...+.-..+..+. ...+...+..+++++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 34433 44444333332222 1245567788888888884
No 496
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.14 E-value=2.5e-05 Score=92.46 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=41.3
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 186 LHDPAVLLLDEPTSGLD-SRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 186 ~~~P~illLDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
-.+|+++++|||+.+|| +..+..+.+.++.+++. |.+++++||+++
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK-NVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHH
Confidence 45899999999999999 78899999999999865 779999999986
No 497
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.13 E-value=0.0011 Score=67.76 Aligned_cols=163 Identities=16% Similarity=0.249 Sum_probs=89.5
Q ss_pred HHHHHhcCCC--------CChHHHHHHHHHHHHHHHHH--HHHHHH--h-hhhhc-ccccccHHHHHHHHHHHHHHHH--
Q 007383 408 ILLRETSSGV--------YRLSSYLIANTLVFLPYLLA--VAIIYS--V-SVYFL-VGLCASWQAFAYFVLVIWVIIL-- 471 (605)
Q Consensus 408 v~~rE~~~g~--------Y~~~~y~la~~l~~lP~~~~--~~~if~--~-i~Y~~-~gl~~~~~~f~~f~~~~~l~~~-- 471 (605)
.+.+|+++|. ++...++++|.++.+...++ ...+.+ + ..++. .|...+...+....+...+..+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 3455655553 57789999999998877432 111111 1 11222 3445556555554444443333
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccc-CCCCCccch-----hhhhcccHHHHHHHHHHHHHhCCCcc
Q 007383 472 -MANSFVLFLSSLAPNYIAGTSLVTIFLGAFFLFSGYFI-KKDSMPKYW-----LFMHFFSMYKYALDALLINEYSCLAS 544 (605)
Q Consensus 472 -~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i-~~~~ip~~~-----~W~~yiSp~~Y~~~al~~nef~~~~~ 544 (605)
+..+++.++|+++++...|..+...+............ ..++ +.+. ..+.+++|..+ ++.+......+..
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~- 245 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIAN-SEALPWVISPNLSFLSPFSP-FNLLIGSILGGGF- 245 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc-
Confidence 45899999999999888777766655444433332222 1111 1122 23466666543 2222222221110
Q ss_pred cccccccCCCccccchhhHhhhcCCCcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007383 545 KCLLWYQENTTCMVTGGDVLQNRGLHERQRWTNIYFLIGFFVLYRLLCFVVLIR 598 (605)
Q Consensus 545 ~C~~~~~~~~~c~~~g~~~L~~~g~~~~~~~~~~~il~~~~i~~~~~~~~~L~~ 598 (605)
.....|.++++++++.+++..+++...++
T Consensus 246 -------------------------~~~~~~~~~~~~~~~~~v~l~la~~~F~r 274 (277)
T PF12679_consen 246 -------------------------VWLSTWPSLLILLAYTLVFLALAYYRFQR 274 (277)
T ss_pred -------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00346888899999999999988854443
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.13 E-value=2.3e-06 Score=83.02 Aligned_cols=37 Identities=32% Similarity=0.618 Sum_probs=32.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~ 105 (605)
|++++|+||||||||||+++|++...+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECC
Confidence 789999999999999999999999765 5777776654
No 499
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.11 E-value=5.8e-06 Score=88.32 Aligned_cols=75 Identities=25% Similarity=0.236 Sum_probs=48.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC--C-ccEEEECCeeCC--cccccCceEEEcCCCCCCCCCCHHHHHHHHHhc
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSP--T-NGTILLNSSPIK--PSSFRKLSAYVPQHDACIPSLTVYETFLFSARL 138 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~--~-~G~I~~~g~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 138 (605)
++|.+++|.||+||||||+|++|++.+.+ . .+.|.....|+. ....++..+.+.|...--...+..+.+.-+.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence 58899999999999999999999998743 2 345655554443 122333457788864321223555555544443
No 500
>PRK08149 ATP synthase SpaL; Validated
Probab=98.11 E-value=4.6e-06 Score=90.43 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=56.1
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCeeCCc-------ccccCceEEEcCCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTN---GTILLNSSPIKP-------SSFRKLSAYVPQHD 120 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~---G~I~~~g~~~~~-------~~~~~~i~yv~Q~~ 120 (605)
...+++++ +.+.+||.++|+|+||+|||||+++|++...++. |.|-.+|+++.. ....+++++|....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 45799999 9999999999999999999999999999998876 999999987631 11235677776643
Done!