Query 007383
Match_columns 605
No_of_seqs 407 out of 3412
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 00:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.2E-52 7.5E-57 441.0 29.4 226 20-260 21-252 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 8.3E-52 2.8E-56 436.3 28.2 219 23-260 4-227 (359)
3 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-51 4.2E-56 422.1 27.6 221 22-260 6-232 (275)
4 2olj_A Amino acid ABC transpor 100.0 2.6E-51 9E-56 417.3 29.3 218 23-260 24-247 (263)
5 3rlf_A Maltose/maltodextrin im 100.0 2E-51 7E-56 436.1 29.6 219 23-260 3-222 (381)
6 3tif_A Uncharacterized ABC tra 100.0 2.5E-51 8.5E-56 411.3 26.5 221 23-259 1-232 (235)
7 1b0u_A Histidine permease; ABC 100.0 5.1E-51 1.8E-55 415.4 28.2 218 23-260 6-241 (262)
8 4g1u_C Hemin import ATP-bindin 100.0 6.9E-51 2.4E-55 415.1 26.9 217 22-259 10-235 (266)
9 2pcj_A ABC transporter, lipopr 100.0 1.2E-50 4.2E-55 403.4 27.3 212 23-255 4-222 (224)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.8E-50 6E-55 409.8 28.2 219 23-261 15-235 (256)
11 1g6h_A High-affinity branched- 100.0 1.2E-50 4.2E-55 411.6 26.2 216 23-258 7-239 (257)
12 1z47_A CYSA, putative ABC-tran 100.0 2.1E-50 7.1E-55 425.8 28.5 222 21-260 12-234 (355)
13 2yyz_A Sugar ABC transporter, 100.0 2E-50 6.8E-55 426.8 27.9 219 23-260 3-222 (359)
14 2it1_A 362AA long hypothetical 100.0 2.7E-50 9.1E-55 426.3 28.3 219 23-260 3-222 (362)
15 1g29_1 MALK, maltose transport 100.0 3.8E-50 1.3E-54 427.2 29.6 219 23-260 3-228 (372)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.9E-50 6.4E-55 427.0 25.3 219 23-260 3-229 (353)
17 1v43_A Sugar-binding transport 100.0 4.8E-50 1.7E-54 425.8 26.7 219 23-260 11-230 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 8.6E-50 2.9E-54 401.4 27.1 217 23-260 6-227 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 9E-50 3.1E-54 420.5 25.3 215 23-260 1-216 (348)
20 2yz2_A Putative ABC transporte 100.0 3.2E-49 1.1E-53 403.2 26.8 223 23-261 2-227 (266)
21 2onk_A Molybdate/tungstate ABC 100.0 1.2E-49 4.1E-54 400.1 23.0 214 23-260 1-215 (240)
22 2ihy_A ABC transporter, ATP-bi 100.0 2.3E-49 8E-54 406.4 22.7 218 22-259 20-250 (279)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 3.9E-48 1.3E-52 391.7 24.9 216 23-258 3-230 (250)
24 2nq2_C Hypothetical ABC transp 100.0 1.5E-47 5E-52 387.9 28.1 208 23-259 4-215 (253)
25 2ixe_A Antigen peptide transpo 100.0 5.8E-48 2E-52 394.7 23.6 219 23-260 16-244 (271)
26 2zu0_C Probable ATP-dependent 100.0 2.6E-47 9E-52 389.1 27.6 226 23-269 20-261 (267)
27 3nh6_A ATP-binding cassette SU 100.0 1.7E-47 5.8E-52 396.6 22.6 212 22-261 52-277 (306)
28 2qi9_C Vitamin B12 import ATP- 100.0 3.5E-47 1.2E-51 384.0 23.9 207 23-259 4-220 (249)
29 2ff7_A Alpha-hemolysin translo 100.0 6.8E-47 2.3E-51 381.8 24.1 213 22-260 6-231 (247)
30 1sgw_A Putative ABC transporte 100.0 3.1E-47 1.1E-51 375.8 18.0 203 21-250 8-210 (214)
31 1mv5_A LMRA, multidrug resista 100.0 5.9E-47 2E-51 381.5 18.3 212 23-260 1-225 (243)
32 2pjz_A Hypothetical protein ST 100.0 3.6E-46 1.2E-50 379.5 23.3 211 23-260 1-214 (263)
33 2ghi_A Transport protein; mult 100.0 1.7E-45 6E-50 374.2 23.9 212 22-260 16-241 (260)
34 2pze_A Cystic fibrosis transme 100.0 1.7E-44 5.9E-49 360.3 22.0 201 22-260 5-217 (229)
35 3gd7_A Fusion complex of cysti 100.0 3.7E-45 1.3E-49 390.6 18.1 210 22-260 18-241 (390)
36 2cbz_A Multidrug resistance-as 100.0 3.2E-44 1.1E-48 360.1 21.4 203 23-260 3-216 (237)
37 4a82_A Cystic fibrosis transme 100.0 4.9E-44 1.7E-48 402.8 24.7 214 22-261 338-564 (578)
38 2yl4_A ATP-binding cassette SU 100.0 1.1E-43 3.7E-48 401.4 24.6 215 24-260 342-569 (595)
39 3qf4_A ABC transporter, ATP-bi 100.0 5.5E-44 1.9E-48 402.8 21.5 213 22-261 340-566 (587)
40 3b5x_A Lipid A export ATP-bind 100.0 2E-43 6.8E-48 398.2 25.4 214 22-260 340-566 (582)
41 3b60_A Lipid A export ATP-bind 100.0 1.6E-43 5.5E-48 399.0 24.5 215 22-261 340-567 (582)
42 3qf4_B Uncharacterized ABC tra 100.0 8.4E-44 2.9E-48 402.3 21.0 212 23-261 354-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 6.9E-42 2.3E-46 352.6 18.3 195 23-260 40-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 6.7E-42 2.3E-46 416.4 20.9 216 23-261 1076-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 4.5E-41 1.5E-45 409.2 23.9 213 23-260 415-640 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 3.9E-40 1.3E-44 400.0 24.3 213 23-260 387-612 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 1.7E-39 5.6E-44 394.5 22.7 216 23-261 1030-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 8.4E-39 2.9E-43 360.2 24.3 208 20-261 354-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-38 4.3E-43 355.0 21.5 208 20-261 284-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 4.8E-38 1.6E-42 349.6 21.9 208 20-259 266-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 5.2E-37 1.8E-41 345.1 18.1 193 53-261 360-559 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 1.1E-36 3.7E-41 343.1 12.8 182 54-248 106-304 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.8E-36 6.2E-41 337.6 12.4 196 24-248 21-234 (538)
54 2iw3_A Elongation factor 3A; a 100.0 5.7E-35 1.9E-39 340.1 25.3 201 20-261 432-635 (986)
55 2iw3_A Elongation factor 3A; a 100.0 1.5E-35 5.1E-40 345.0 18.2 206 21-255 669-981 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 5.3E-36 1.8E-40 343.0 13.9 204 52-260 30-297 (670)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.9E-33 6.4E-38 321.9 19.4 197 53-260 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 1.5E-33 5.3E-38 316.9 11.2 189 53-252 91-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-33 4.2E-38 314.2 9.1 174 63-250 22-215 (538)
60 3pih_A Uvrabc system protein A 100.0 4.3E-31 1.5E-35 307.3 19.8 197 54-260 598-901 (916)
61 2vf7_A UVRA2, excinuclease ABC 100.0 4.9E-31 1.7E-35 304.5 18.9 207 21-259 500-825 (842)
62 2r6f_A Excinuclease ABC subuni 100.0 6.4E-31 2.2E-35 303.9 18.7 196 55-260 639-941 (972)
63 2ygr_A Uvrabc system protein A 100.0 4E-30 1.4E-34 298.3 17.5 196 55-260 657-959 (993)
64 4aby_A DNA repair protein RECN 100.0 6.1E-30 2.1E-34 276.2 15.9 194 54-254 49-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 8E-33 2.7E-37 302.0 -9.2 185 57-259 129-336 (460)
66 3b85_A Phosphate starvation-in 99.9 1.9E-30 6.5E-35 254.8 -12.4 142 51-232 11-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.8E-26 9.4E-31 244.0 17.6 82 168-252 277-364 (365)
68 1e69_A Chromosome segregation 99.9 1.2E-25 4E-30 235.2 13.3 196 57-258 16-310 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 1.8E-28 6.3E-33 263.3 -11.4 173 52-243 35-248 (413)
70 4gp7_A Metallophosphoesterase; 99.9 2.3E-26 7.9E-31 218.6 2.7 143 58-232 1-160 (171)
71 1znw_A Guanylate kinase, GMP k 99.9 6.8E-29 2.3E-33 243.2 -17.2 181 51-247 7-203 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 5.1E-25 1.8E-29 210.9 3.5 145 68-252 2-159 (178)
73 2v9p_A Replication protein E1; 99.9 3E-28 1E-32 251.7 -22.5 169 23-265 101-270 (305)
74 3b9q_A Chloroplast SRP recepto 99.9 7.3E-26 2.5E-30 234.5 -5.2 175 56-250 90-284 (302)
75 3sop_A Neuronal-specific septi 99.9 5E-25 1.7E-29 224.7 -3.9 148 68-232 4-151 (270)
76 2og2_A Putative signal recogni 99.9 1.2E-24 4E-29 229.9 -4.0 174 57-250 148-341 (359)
77 2dpy_A FLII, flagellum-specifi 99.9 2.6E-25 8.9E-30 241.4 -9.7 192 23-259 131-342 (438)
78 1z6g_A Guanylate kinase; struc 99.9 1.5E-26 5.3E-31 228.6 -20.0 154 53-219 10-176 (218)
79 1cr0_A DNA primase/helicase; R 99.9 4.8E-23 1.6E-27 212.4 2.7 186 53-250 22-237 (296)
80 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.5E-23 8.6E-28 218.2 -0.5 131 55-249 160-291 (330)
81 4ad8_A DNA repair protein RECN 99.8 1.1E-21 3.9E-26 217.8 11.1 76 169-248 395-473 (517)
82 2o5v_A DNA replication and rep 99.8 9.3E-21 3.2E-25 200.3 15.1 81 170-259 265-354 (359)
83 3qkt_A DNA double-strand break 99.8 4E-20 1.4E-24 194.6 19.4 76 168-246 246-327 (339)
84 2obl_A ESCN; ATPase, hydrolase 99.8 6.6E-23 2.2E-27 216.1 -3.5 191 23-259 45-253 (347)
85 2jeo_A Uridine-cytidine kinase 99.8 2.7E-22 9.1E-27 201.4 0.4 176 51-262 10-188 (245)
86 3aez_A Pantothenate kinase; tr 99.8 5.8E-23 2E-27 213.6 -4.8 123 63-203 87-209 (312)
87 3pih_A Uvrabc system protein A 99.8 4.5E-21 1.5E-25 223.3 10.4 160 81-260 383-559 (916)
88 2o8b_B DNA mismatch repair pro 99.8 1E-21 3.5E-26 232.2 0.8 175 22-258 749-939 (1022)
89 1tf7_A KAIC; homohexamer, hexa 99.8 1.7E-23 5.7E-28 233.0 -14.4 169 52-248 24-210 (525)
90 1tf7_A KAIC; homohexamer, hexa 99.8 2E-20 7E-25 208.1 9.6 155 60-249 275-444 (525)
91 3thx_A DNA mismatch repair pro 99.8 5.4E-20 1.9E-24 215.1 10.8 154 51-259 647-811 (934)
92 2r6f_A Excinuclease ABC subuni 99.8 1.2E-19 4.1E-24 210.2 12.2 133 123-260 449-599 (972)
93 2vf7_A UVRA2, excinuclease ABC 99.8 1.1E-19 3.9E-24 209.9 9.6 176 74-259 270-473 (842)
94 2qnr_A Septin-2, protein NEDD5 99.8 8.8E-22 3E-26 203.9 -7.3 158 51-232 9-168 (301)
95 2ehv_A Hypothetical protein PH 99.8 9.4E-21 3.2E-25 189.1 -0.3 163 61-246 25-206 (251)
96 4a74_A DNA repair and recombin 99.8 1.7E-20 5.9E-25 184.8 0.9 151 61-248 20-200 (231)
97 2eyu_A Twitching motility prot 99.8 2.6E-20 8.9E-25 188.9 1.4 132 54-247 15-147 (261)
98 2ygr_A Uvrabc system protein A 99.8 9.2E-19 3.1E-23 203.5 13.7 133 123-261 466-617 (993)
99 1rj9_A FTSY, signal recognitio 99.8 1.4E-20 4.7E-25 195.0 -4.4 150 65-232 101-259 (304)
100 3thx_B DNA mismatch repair pro 99.8 2.4E-19 8.3E-24 209.1 5.4 145 52-242 659-805 (918)
101 3asz_A Uridine kinase; cytidin 99.8 1.3E-21 4.4E-26 191.2 -11.8 147 63-232 3-162 (211)
102 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.7E-18 1.3E-22 158.2 10.9 80 168-250 55-142 (148)
103 1ewq_A DNA mismatch repair pro 99.7 2.8E-19 9.5E-24 205.6 1.7 133 52-239 565-704 (765)
104 3szr_A Interferon-induced GTP- 99.7 9.2E-21 3.1E-25 214.1 -10.6 168 61-259 43-235 (608)
105 1w1w_A Structural maintenance 99.7 6.4E-18 2.2E-22 183.4 11.8 75 169-246 332-410 (430)
106 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.8E-19 6.2E-24 177.3 -0.6 169 53-248 9-192 (235)
107 1pzn_A RAD51, DNA repair and r 99.7 1.3E-19 4.4E-24 191.4 -3.0 165 54-255 118-309 (349)
108 1wb9_A DNA mismatch repair pro 99.7 7.2E-19 2.5E-23 203.2 1.4 156 52-254 594-751 (800)
109 1nlf_A Regulatory protein REPA 99.7 3.2E-17 1.1E-21 167.4 9.7 151 62-232 26-182 (279)
110 1pui_A ENGB, probable GTP-bind 99.7 3.8E-19 1.3E-23 172.7 -6.7 173 23-219 3-199 (210)
111 2i3b_A HCR-ntpase, human cance 99.7 1.2E-19 4.2E-24 175.1 -11.2 156 66-253 1-168 (189)
112 3jvv_A Twitching mobility prot 99.7 1.4E-17 4.6E-22 176.1 2.9 127 62-248 119-246 (356)
113 1s96_A Guanylate kinase, GMP k 99.6 2.5E-18 8.6E-23 169.8 -4.9 148 60-264 10-163 (219)
114 2qag_C Septin-7; cell cycle, c 99.6 7E-18 2.4E-22 181.6 -2.5 162 23-232 11-178 (418)
115 2cvh_A DNA repair and recombin 99.6 7.7E-16 2.6E-20 150.4 9.1 156 53-248 6-185 (220)
116 2bdt_A BH3686; alpha-beta prot 99.6 5.4E-20 1.9E-24 176.6 -22.0 172 66-259 2-182 (189)
117 1zp6_A Hypothetical protein AT 99.6 4.6E-18 1.6E-22 163.0 -10.6 149 62-228 5-158 (191)
118 2bbw_A Adenylate kinase 4, AK4 99.6 8.4E-18 2.9E-22 168.5 -9.2 144 65-219 26-199 (246)
119 1n0w_A DNA repair protein RAD5 99.6 8.4E-16 2.9E-20 152.4 3.5 153 55-248 12-209 (243)
120 2ewv_A Twitching motility prot 99.6 3.7E-16 1.3E-20 166.3 0.7 129 55-245 127-256 (372)
121 3kta_B Chromosome segregation 99.6 9.5E-15 3.2E-19 138.7 10.0 88 168-259 62-156 (173)
122 2qag_B Septin-6, protein NEDD5 99.5 9.2E-17 3.1E-21 172.5 -4.8 166 52-230 27-218 (427)
123 1lw7_A Transcriptional regulat 99.5 3.1E-18 1E-22 182.0 -16.6 164 55-246 157-342 (365)
124 2gza_A Type IV secretion syste 99.5 9.2E-16 3.1E-20 162.7 1.6 138 55-249 164-303 (361)
125 2rcn_A Probable GTPase ENGC; Y 99.5 3.3E-15 1.1E-19 157.2 5.1 122 55-185 205-328 (358)
126 1nij_A Hypothetical protein YJ 99.5 3.1E-18 1.1E-22 178.6 -18.4 158 67-240 5-197 (318)
127 1htw_A HI0065; nucleotide-bind 99.5 5.5E-17 1.9E-21 152.0 -8.4 79 52-134 19-97 (158)
128 2yhs_A FTSY, cell division pro 99.5 5.4E-16 1.8E-20 168.6 -4.1 154 57-230 284-448 (503)
129 3e70_C DPA, signal recognition 99.5 7.6E-16 2.6E-20 160.9 -3.9 163 64-250 127-306 (328)
130 2f1r_A Molybdopterin-guanine d 99.5 1.3E-16 4.6E-21 151.3 -9.0 137 67-221 3-164 (171)
131 2qm8_A GTPase/ATPase; G protei 99.5 1.6E-16 5.4E-21 167.0 -11.4 161 53-218 42-260 (337)
132 2yv5_A YJEQ protein; hydrolase 99.4 7.5E-15 2.6E-19 151.9 -1.1 119 63-184 162-301 (302)
133 3auy_A DNA double-strand break 99.4 7.5E-13 2.6E-17 140.7 12.0 75 168-246 278-359 (371)
134 3ec2_A DNA replication protein 99.4 1.9E-13 6.6E-18 129.8 5.0 113 60-233 32-145 (180)
135 1udx_A The GTP-binding protein 99.4 1.7E-14 5.8E-19 155.2 -2.8 166 56-240 147-317 (416)
136 2kjq_A DNAA-related protein; s 99.4 2.7E-13 9.3E-18 125.5 5.5 95 54-232 29-126 (149)
137 1sxj_E Activator 1 40 kDa subu 99.4 3.8E-13 1.3E-17 141.2 6.9 136 69-233 39-176 (354)
138 3lda_A DNA repair protein RAD5 99.3 2.9E-12 9.8E-17 137.2 12.2 148 61-249 173-364 (400)
139 1p9r_A General secretion pathw 99.3 5E-15 1.7E-19 159.5 -9.9 132 54-193 157-314 (418)
140 2oap_1 GSPE-2, type II secreti 99.3 1.4E-15 4.8E-20 167.9 -14.5 173 52-240 246-458 (511)
141 1odf_A YGR205W, hypothetical 3 99.3 4.6E-14 1.6E-18 145.0 -2.5 125 64-205 29-169 (290)
142 1u0l_A Probable GTPase ENGC; p 99.3 3.1E-13 1.1E-17 139.6 -1.0 107 62-173 165-294 (301)
143 1in4_A RUVB, holliday junction 99.3 1.4E-14 4.9E-19 151.8 -11.9 164 51-240 29-210 (334)
144 1lvg_A Guanylate kinase, GMP k 99.2 7.2E-16 2.4E-20 149.6 -21.0 151 64-247 2-173 (198)
145 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 2.8E-14 9.5E-19 152.2 -13.4 169 62-258 16-210 (392)
146 1t9h_A YLOQ, probable GTPase E 99.2 9.8E-13 3.3E-17 135.9 -1.7 116 61-178 168-303 (307)
147 3c8u_A Fructokinase; YP_612366 99.2 1.2E-13 4.1E-18 134.7 -9.0 159 63-263 19-183 (208)
148 2r6a_A DNAB helicase, replicat 99.2 7.2E-12 2.4E-16 136.7 3.7 182 53-250 190-401 (454)
149 1sq5_A Pantothenate kinase; P- 99.1 4.2E-13 1.4E-17 139.1 -7.2 127 54-203 49-199 (308)
150 2x8a_A Nuclear valosin-contain 99.1 8.9E-15 3E-19 149.2 -19.6 143 52-213 32-190 (274)
151 2dr3_A UPF0273 protein PH0284; 99.1 4E-12 1.4E-16 125.9 -2.0 171 54-247 10-196 (247)
152 3lnc_A Guanylate kinase, GMP k 99.1 7.1E-15 2.4E-19 145.6 -23.7 41 52-92 13-54 (231)
153 1vma_A Cell division protein F 99.1 6E-11 2E-15 122.6 4.4 113 59-217 97-212 (306)
154 3tr0_A Guanylate kinase, GMP k 99.0 6E-12 2.1E-16 121.4 -3.6 71 60-134 1-74 (205)
155 2ius_A DNA translocase FTSK; n 99.0 7E-12 2.4E-16 137.6 -4.4 179 58-244 159-361 (512)
156 1ls1_A Signal recognition part 99.0 7.8E-10 2.7E-14 113.8 10.3 127 57-227 91-218 (295)
157 3euj_A Chromosome partition pr 99.0 1.4E-10 4.7E-15 126.5 3.8 52 53-105 17-68 (483)
158 2zr9_A Protein RECA, recombina 99.0 5.5E-10 1.9E-14 117.6 8.0 155 55-255 48-237 (349)
159 2px0_A Flagellar biosynthesis 99.0 4.3E-10 1.5E-14 115.7 6.2 142 64-253 103-247 (296)
160 1oix_A RAS-related protein RAB 98.9 8.1E-11 2.8E-15 112.6 -0.7 138 68-216 31-189 (191)
161 3k1j_A LON protease, ATP-depen 98.9 1.4E-11 4.9E-16 139.0 -8.1 158 51-215 45-227 (604)
162 1iy2_A ATP-dependent metallopr 98.8 1.6E-12 5.6E-17 132.3 -18.2 121 53-191 62-190 (278)
163 1qhl_A Protein (cell division 98.8 1.4E-10 4.8E-15 114.7 -4.2 59 60-119 22-91 (227)
164 3hr8_A Protein RECA; alpha and 98.8 1.9E-09 6.7E-14 113.4 3.4 158 55-248 48-230 (356)
165 1ixz_A ATP-dependent metallopr 98.8 3E-12 1E-16 128.4 -18.3 125 53-197 38-170 (254)
166 2qtf_A Protein HFLX, GTP-bindi 98.7 2.1E-09 7.3E-14 113.7 0.0 143 65-219 177-354 (364)
167 2f9l_A RAB11B, member RAS onco 98.7 5.1E-09 1.7E-13 100.4 1.8 37 179-217 130-166 (199)
168 1svm_A Large T antigen; AAA+ f 98.6 1.4E-10 4.9E-15 123.1 -12.2 139 53-199 156-312 (377)
169 4eun_A Thermoresistant glucoki 98.5 2.6E-09 8.8E-14 103.1 -3.8 73 55-131 18-92 (200)
170 2ce7_A Cell division protein F 98.5 2.9E-07 9.9E-12 100.5 9.2 113 55-232 40-165 (476)
171 3kta_A Chromosome segregation 98.4 7.7E-08 2.6E-12 90.8 3.7 119 57-180 18-152 (182)
172 4a1f_A DNAB helicase, replicat 98.4 1.5E-07 5.2E-12 98.3 5.7 131 53-229 33-164 (338)
173 4e22_A Cytidylate kinase; P-lo 98.4 2.2E-08 7.6E-13 100.4 -2.3 64 54-120 18-96 (252)
174 3cr8_A Sulfate adenylyltranfer 98.4 1E-08 3.5E-13 113.9 -5.2 43 62-104 365-409 (552)
175 2j41_A Guanylate kinase; GMP, 98.4 9.2E-08 3.2E-12 91.8 2.1 34 62-95 2-35 (207)
176 3t34_A Dynamin-related protein 98.3 1.4E-06 4.8E-11 91.7 10.7 173 53-229 24-212 (360)
177 2xau_A PRE-mRNA-splicing facto 98.3 3.7E-07 1.3E-11 105.7 5.9 73 169-243 189-263 (773)
178 3a00_A Guanylate kinase, GMP k 98.3 1.1E-07 3.8E-12 90.5 1.2 30 66-95 1-30 (186)
179 1zu4_A FTSY; GTPase, signal re 98.3 8.3E-08 2.8E-12 99.7 0.3 80 55-134 94-186 (320)
180 3nwj_A ATSK2; P loop, shikimat 98.3 3.8E-08 1.3E-12 98.7 -2.3 52 23-90 17-72 (250)
181 2e87_A Hypothetical protein PH 98.3 9.5E-07 3.2E-11 93.0 7.6 125 65-232 166-293 (357)
182 3uie_A Adenylyl-sulfate kinase 98.2 2.8E-08 9.5E-13 95.8 -4.7 52 52-104 11-64 (200)
183 1jjv_A Dephospho-COA kinase; P 98.2 2.2E-07 7.4E-12 89.6 1.6 137 68-263 4-141 (206)
184 2dhr_A FTSH; AAA+ protein, hex 98.2 9.5E-09 3.2E-13 112.9 -11.5 126 54-199 54-187 (499)
185 1kgd_A CASK, peripheral plasma 98.1 4.9E-07 1.7E-11 85.5 1.2 37 64-100 3-40 (180)
186 1ega_A Protein (GTP-binding pr 98.1 4.4E-06 1.5E-10 85.8 7.6 147 66-243 8-170 (301)
187 1v5w_A DMC1, meiotic recombina 98.1 1E-05 3.4E-10 84.7 10.1 145 56-232 111-275 (343)
188 2vp4_A Deoxynucleoside kinase; 98.1 1.1E-06 3.8E-11 86.5 2.5 39 62-104 16-54 (230)
189 3vaa_A Shikimate kinase, SK; s 98.0 1.9E-06 6.6E-11 82.7 3.6 40 51-90 10-49 (199)
190 1fnn_A CDC6P, cell division co 98.0 2.2E-05 7.7E-10 82.3 11.8 124 65-232 41-170 (389)
191 2dy1_A Elongation factor G; tr 98.0 1.6E-06 5.4E-11 98.8 2.5 131 60-233 3-138 (665)
192 2z43_A DNA repair and recombin 98.0 2.4E-05 8.2E-10 81.1 11.0 144 56-231 96-258 (324)
193 2z4s_A Chromosomal replication 98.0 2.1E-06 7.2E-11 93.0 3.0 70 187-257 193-264 (440)
194 3bh0_A DNAB-like replicative h 98.0 3.8E-06 1.3E-10 86.9 4.3 133 53-229 55-189 (315)
195 3ney_A 55 kDa erythrocyte memb 97.9 3E-06 1E-10 81.6 2.5 28 64-91 17-44 (197)
196 1rz3_A Hypothetical protein rb 97.9 1.6E-06 5.4E-11 83.5 0.3 41 63-103 19-59 (201)
197 3tau_A Guanylate kinase, GMP k 97.9 6.5E-06 2.2E-10 79.7 3.6 34 64-97 6-40 (208)
198 3b9p_A CG5977-PA, isoform A; A 97.9 7.7E-05 2.6E-09 75.7 11.8 75 172-246 97-187 (297)
199 1knq_A Gluconate kinase; ALFA/ 97.8 3.7E-06 1.3E-10 78.6 1.5 37 64-104 6-42 (175)
200 2qt1_A Nicotinamide riboside k 97.8 1E-05 3.6E-10 77.8 3.9 30 62-91 17-46 (207)
201 2q6t_A DNAB replication FORK h 97.8 1.1E-05 3.9E-10 87.3 4.4 170 54-247 188-397 (444)
202 3kl4_A SRP54, signal recogniti 97.8 4.4E-05 1.5E-09 82.1 8.8 125 65-230 96-223 (433)
203 3tqc_A Pantothenate kinase; bi 97.7 1.9E-06 6.4E-11 89.3 -2.6 40 53-92 73-118 (321)
204 2qby_A CDC6 homolog 1, cell di 97.7 5.1E-06 1.7E-10 86.9 -0.4 29 64-92 43-71 (386)
205 1cke_A CK, MSSA, protein (cyti 97.7 1.9E-06 6.4E-11 84.0 -3.9 55 66-120 5-74 (227)
206 2wjg_A FEOB, ferrous iron tran 97.6 1.2E-05 4.1E-10 75.3 1.7 22 68-89 9-30 (188)
207 3cf0_A Transitional endoplasmi 97.6 4.7E-05 1.6E-09 78.0 6.3 29 62-90 45-73 (301)
208 1ypw_A Transitional endoplasmi 97.6 3.7E-05 1.3E-09 89.4 4.8 30 62-91 234-263 (806)
209 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.8E-05 1.3E-09 70.4 3.8 30 57-87 15-44 (149)
210 1kag_A SKI, shikimate kinase I 97.6 2.2E-05 7.7E-10 72.8 2.3 28 65-92 3-30 (173)
211 2p67_A LAO/AO transport system 97.5 5.3E-06 1.8E-10 86.8 -2.8 52 53-104 43-94 (341)
212 1mky_A Probable GTP-binding pr 97.5 7E-05 2.4E-09 80.9 5.9 67 68-134 182-263 (439)
213 1sxj_C Activator 1 40 kDa subu 97.5 2.1E-07 7.3E-12 97.0 -14.3 46 51-96 29-76 (340)
214 3lxx_A GTPase IMAP family memb 97.5 0.00083 2.8E-08 65.9 12.3 28 68-95 31-58 (239)
215 1lv7_A FTSH; alpha/beta domain 97.5 0.00031 1.1E-08 69.7 9.2 35 55-91 36-70 (257)
216 4eaq_A DTMP kinase, thymidylat 97.5 3.3E-05 1.1E-09 76.0 2.0 45 55-100 12-59 (229)
217 1u94_A RECA protein, recombina 97.5 0.0017 5.9E-08 68.0 15.2 35 55-89 50-86 (356)
218 2www_A Methylmalonic aciduria 97.4 2.7E-05 9.1E-10 81.7 1.0 41 64-104 72-112 (349)
219 2qag_A Septin-2, protein NEDD5 97.4 3.5E-06 1.2E-10 88.9 -5.8 46 52-103 29-74 (361)
220 2i1q_A DNA repair and recombin 97.4 0.00071 2.4E-08 69.7 11.5 170 55-247 86-290 (322)
221 2pez_A Bifunctional 3'-phospho 97.4 3.3E-05 1.1E-09 72.4 1.0 39 64-103 3-43 (179)
222 3m6a_A ATP-dependent protease 97.3 2.2E-05 7.6E-10 87.2 -1.1 48 54-102 97-144 (543)
223 2gj8_A MNME, tRNA modification 97.2 0.00024 8.3E-09 65.9 4.9 28 64-91 2-29 (172)
224 3qks_A DNA double-strand break 97.2 0.00016 5.6E-09 69.6 3.8 29 58-87 16-44 (203)
225 2w58_A DNAI, primosome compone 97.2 0.00032 1.1E-08 66.7 5.9 25 67-91 55-79 (202)
226 3ice_A Transcription terminati 97.2 3.7E-05 1.3E-09 81.0 -1.0 33 58-90 166-198 (422)
227 1m7g_A Adenylylsulfate kinase; 97.2 6.4E-05 2.2E-09 72.6 0.6 42 62-103 21-64 (211)
228 3bgw_A DNAB-like replicative h 97.2 0.00078 2.7E-08 72.8 8.7 178 54-247 185-394 (444)
229 1m2o_B GTP-binding protein SAR 97.1 0.00023 8E-09 67.1 3.9 36 53-89 11-46 (190)
230 3llm_A ATP-dependent RNA helic 97.1 7.1E-05 2.4E-09 73.6 0.3 151 63-240 73-228 (235)
231 3h4m_A Proteasome-activating n 97.1 0.001 3.6E-08 66.7 8.9 27 64-90 49-75 (285)
232 3bos_A Putative DNA replicatio 97.1 0.00025 8.7E-09 68.7 4.0 46 187-232 103-149 (242)
233 4fcw_A Chaperone protein CLPB; 97.1 0.00051 1.8E-08 69.8 6.4 30 67-96 48-77 (311)
234 2b8t_A Thymidine kinase; deoxy 97.1 0.00052 1.8E-08 67.3 6.1 53 188-246 89-150 (223)
235 1l8q_A Chromosomal replication 97.1 0.00042 1.4E-08 71.3 5.5 45 186-231 96-141 (324)
236 1f6b_A SAR1; gtpases, N-termin 97.1 0.0001 3.4E-09 70.3 0.7 37 52-89 12-48 (198)
237 2ffh_A Protein (FFH); SRP54, s 97.0 0.00013 4.4E-09 78.3 1.0 46 57-104 91-136 (425)
238 2yvu_A Probable adenylyl-sulfa 97.0 0.0002 6.9E-09 67.4 1.6 34 64-97 11-44 (186)
239 2qor_A Guanylate kinase; phosp 96.9 0.00036 1.2E-08 66.8 3.0 29 63-91 9-37 (204)
240 2wji_A Ferrous iron transport 96.9 0.00088 3E-08 61.4 5.4 24 68-91 5-28 (165)
241 2v1u_A Cell division control p 96.9 0.00056 1.9E-08 71.3 4.1 27 64-90 42-68 (387)
242 1y63_A LMAJ004144AAA protein; 96.8 0.00047 1.6E-08 65.0 3.0 32 58-89 2-33 (184)
243 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00043 1.5E-08 73.5 2.8 42 61-102 17-69 (396)
244 3cmw_A Protein RECA, recombina 96.8 0.0023 7.7E-08 79.1 9.4 142 62-249 728-902 (1706)
245 1q57_A DNA primase/helicase; d 96.8 0.0071 2.4E-07 66.2 12.5 169 54-247 230-441 (503)
246 1j8m_F SRP54, signal recogniti 96.8 0.00011 3.8E-09 75.3 -1.9 47 57-104 89-136 (297)
247 3auy_A DNA double-strand break 96.8 0.00064 2.2E-08 71.6 4.0 31 56-87 16-46 (371)
248 2zts_A Putative uncharacterize 96.8 0.0047 1.6E-07 60.2 9.9 61 186-246 133-206 (251)
249 1njg_A DNA polymerase III subu 96.7 0.0034 1.2E-07 60.0 8.4 43 187-232 125-167 (250)
250 3d8b_A Fidgetin-like protein 1 96.7 0.0067 2.3E-07 63.4 11.0 27 64-90 115-141 (357)
251 2if2_A Dephospho-COA kinase; a 96.7 0.00058 2E-08 65.0 2.4 21 68-88 3-23 (204)
252 1xp8_A RECA protein, recombina 96.7 0.016 5.6E-07 60.8 13.5 34 55-88 61-96 (366)
253 1np6_A Molybdopterin-guanine d 96.6 0.00057 2E-08 64.3 1.9 37 67-103 7-46 (174)
254 1sxj_D Activator 1 41 kDa subu 96.6 1.4E-05 4.8E-10 82.9 -10.5 42 188-232 133-174 (353)
255 2zej_A Dardarin, leucine-rich 96.6 0.001 3.4E-08 62.2 3.3 25 68-92 4-28 (184)
256 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0076 2.6E-07 59.3 9.6 27 64-90 37-63 (262)
257 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0029 1E-07 65.2 6.3 33 56-88 113-145 (331)
258 3cm0_A Adenylate kinase; ATP-b 96.5 0.0013 4.6E-08 61.4 3.5 26 64-89 2-27 (186)
259 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00024 8.2E-09 74.2 -2.0 38 54-91 10-49 (359)
260 2p5t_B PEZT; postsegregational 96.5 0.00053 1.8E-08 68.2 0.6 40 62-103 28-67 (253)
261 3t61_A Gluconokinase; PSI-biol 96.4 0.0011 3.6E-08 63.2 2.4 25 66-90 18-42 (202)
262 3io5_A Recombination and repai 96.4 0.0087 3E-07 61.5 9.2 58 174-231 93-172 (333)
263 3n70_A Transport activator; si 96.3 0.0076 2.6E-07 54.3 7.4 41 188-231 76-116 (145)
264 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6.3E-08 59.3 3.3 23 68-90 3-25 (173)
265 1qhx_A CPT, protein (chloramph 96.3 0.0022 7.4E-08 59.5 3.6 26 66-91 3-28 (178)
266 3r20_A Cytidylate kinase; stru 96.3 0.00084 2.9E-08 66.2 0.5 25 66-90 9-33 (233)
267 1q3t_A Cytidylate kinase; nucl 96.2 0.002 6.7E-08 63.2 3.0 28 63-90 13-40 (236)
268 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.046 1.6E-06 56.2 13.5 27 64-90 43-69 (322)
269 1kht_A Adenylate kinase; phosp 96.2 0.0027 9.2E-08 59.3 3.5 25 66-90 3-27 (192)
270 3cmw_A Protein RECA, recombina 96.0 0.052 1.8E-06 67.1 14.8 149 55-249 370-553 (1706)
271 2rhm_A Putative kinase; P-loop 96.0 0.0028 9.6E-08 59.3 3.0 27 64-90 3-29 (193)
272 3ihw_A Centg3; RAS, centaurin, 96.0 0.0048 1.7E-07 57.6 4.6 35 68-102 22-65 (184)
273 1ex7_A Guanylate kinase; subst 96.0 0.0031 1.1E-07 59.9 3.2 23 68-90 3-25 (186)
274 3cmu_A Protein RECA, recombina 96.0 0.024 8.4E-07 70.9 11.9 149 55-249 370-553 (2050)
275 1gvn_B Zeta; postsegregational 95.9 0.0034 1.2E-07 63.7 3.3 36 64-101 31-66 (287)
276 1vht_A Dephospho-COA kinase; s 95.9 0.0044 1.5E-07 59.6 3.8 24 65-88 3-26 (218)
277 3lw7_A Adenylate kinase relate 95.9 0.004 1.4E-07 56.9 3.3 19 68-86 3-21 (179)
278 2ze6_A Isopentenyl transferase 95.9 0.0041 1.4E-07 61.8 3.5 24 67-90 2-25 (253)
279 2v54_A DTMP kinase, thymidylat 95.9 0.0046 1.6E-07 58.5 3.6 26 65-90 3-28 (204)
280 3trf_A Shikimate kinase, SK; a 95.8 0.0045 1.5E-07 57.7 3.5 26 65-90 4-29 (185)
281 2jaq_A Deoxyguanosine kinase; 95.8 0.0045 1.5E-07 58.4 3.4 23 68-90 2-24 (205)
282 2plr_A DTMP kinase, probable t 95.8 0.005 1.7E-07 58.4 3.8 27 65-91 3-29 (213)
283 1gtv_A TMK, thymidylate kinase 95.8 0.001 3.6E-08 63.6 -1.1 25 68-92 2-26 (214)
284 3iij_A Coilin-interacting nucl 95.8 0.0041 1.4E-07 57.9 3.0 25 65-89 10-34 (180)
285 1jal_A YCHF protein; nucleotid 95.8 0.0059 2E-07 64.0 4.5 35 67-101 3-48 (363)
286 3hu3_A Transitional endoplasmi 95.8 0.0098 3.3E-07 65.0 6.4 28 63-90 235-262 (489)
287 1fzq_A ADP-ribosylation factor 95.8 0.0044 1.5E-07 57.6 3.1 23 68-90 18-40 (181)
288 1ly1_A Polynucleotide kinase; 95.7 0.0058 2E-07 56.4 3.5 22 67-88 3-24 (181)
289 2wwf_A Thymidilate kinase, put 95.7 0.0054 1.9E-07 58.4 3.3 27 64-90 8-34 (212)
290 1xx6_A Thymidine kinase; NESG, 95.6 0.018 6.1E-07 54.8 6.8 53 188-246 81-142 (191)
291 2c95_A Adenylate kinase 1; tra 95.6 0.0056 1.9E-07 57.4 3.1 27 64-90 7-33 (196)
292 1via_A Shikimate kinase; struc 95.6 0.0057 2E-07 56.6 3.1 23 68-90 6-28 (175)
293 3k53_A Ferrous iron transport 95.6 0.0049 1.7E-07 61.6 2.8 24 68-91 5-28 (271)
294 4ag6_A VIRB4 ATPase, type IV s 95.6 0.0036 1.2E-07 66.2 1.7 45 188-233 262-309 (392)
295 1nn5_A Similar to deoxythymidy 95.5 0.0062 2.1E-07 58.0 3.2 27 64-90 7-33 (215)
296 1uf9_A TT1252 protein; P-loop, 95.5 0.0069 2.4E-07 57.1 3.4 23 67-89 9-31 (203)
297 1tev_A UMP-CMP kinase; ploop, 95.5 0.0078 2.7E-07 56.2 3.7 24 66-89 3-26 (196)
298 1nks_A Adenylate kinase; therm 95.4 0.0072 2.5E-07 56.3 3.2 23 68-90 3-25 (194)
299 1xjc_A MOBB protein homolog; s 95.4 0.008 2.8E-07 56.1 3.4 25 67-91 5-29 (169)
300 2nzj_A GTP-binding protein REM 95.3 0.0089 3E-07 54.4 3.3 23 68-90 6-28 (175)
301 2erx_A GTP-binding protein DI- 95.3 0.009 3.1E-07 54.0 3.3 23 68-90 5-27 (172)
302 2bwj_A Adenylate kinase 5; pho 95.3 0.0072 2.4E-07 56.8 2.6 27 64-90 10-36 (199)
303 3q72_A GTP-binding protein RAD 95.3 0.0073 2.5E-07 54.5 2.5 24 68-91 4-27 (166)
304 3co5_A Putative two-component 95.3 0.029 1E-06 50.2 6.5 42 188-231 75-116 (143)
305 2ged_A SR-beta, signal recogni 95.3 0.0073 2.5E-07 56.3 2.6 25 67-91 49-73 (193)
306 1aky_A Adenylate kinase; ATP:A 95.2 0.01 3.6E-07 57.1 3.6 26 65-90 3-28 (220)
307 2j9r_A Thymidine kinase; TK1, 95.2 0.027 9.1E-07 54.5 6.4 53 188-246 101-162 (214)
308 2orv_A Thymidine kinase; TP4A 95.2 0.05 1.7E-06 53.2 8.4 53 187-246 89-150 (234)
309 1z2a_A RAS-related protein RAB 95.2 0.0078 2.7E-07 54.3 2.5 23 68-90 7-29 (168)
310 2z0h_A DTMP kinase, thymidylat 95.2 0.01 3.4E-07 55.7 3.3 23 68-90 2-24 (197)
311 3q85_A GTP-binding protein REM 95.2 0.01 3.5E-07 53.7 3.2 23 69-91 5-27 (169)
312 1ko7_A HPR kinase/phosphatase; 95.1 0.014 4.9E-07 59.8 4.5 37 52-89 131-167 (314)
313 3tw8_B RAS-related protein RAB 95.1 0.0095 3.3E-07 54.4 2.9 23 68-90 11-33 (181)
314 2vli_A Antibiotic resistance p 95.1 0.0076 2.6E-07 55.9 2.3 26 65-90 4-29 (183)
315 3b1v_A Ferrous iron uptake tra 95.1 0.01 3.5E-07 59.7 3.3 23 68-90 5-27 (272)
316 1kao_A RAP2A; GTP-binding prot 95.1 0.009 3.1E-07 53.6 2.6 23 68-90 5-27 (167)
317 2dyk_A GTP-binding protein; GT 95.1 0.009 3.1E-07 53.5 2.6 23 68-90 3-25 (161)
318 1u8z_A RAS-related protein RAL 95.1 0.0091 3.1E-07 53.7 2.5 23 68-90 6-28 (168)
319 1zd8_A GTP:AMP phosphotransfer 95.0 0.011 3.7E-07 57.3 3.1 27 64-90 5-31 (227)
320 3cmu_A Protein RECA, recombina 95.0 0.024 8.2E-07 71.0 6.8 37 55-91 719-757 (2050)
321 3lxw_A GTPase IMAP family memb 95.0 0.013 4.6E-07 57.7 3.8 25 68-92 23-47 (247)
322 2ce2_X GTPase HRAS; signaling 95.0 0.0084 2.9E-07 53.7 2.1 23 68-90 5-27 (166)
323 3ake_A Cytidylate kinase; CMP 95.0 0.012 4.1E-07 55.6 3.3 23 68-90 4-26 (208)
324 3iev_A GTP-binding protein ERA 95.0 0.011 3.8E-07 60.4 3.3 23 68-90 12-34 (308)
325 2lkc_A Translation initiation 95.0 0.014 5E-07 53.2 3.8 25 66-90 8-32 (178)
326 1z0j_A RAB-22, RAS-related pro 95.0 0.01 3.4E-07 53.7 2.6 23 68-90 8-30 (170)
327 1svi_A GTP-binding protein YSX 95.0 0.01 3.5E-07 55.3 2.6 23 68-90 25-47 (195)
328 1z08_A RAS-related protein RAB 95.0 0.01 3.5E-07 53.7 2.6 23 68-90 8-30 (170)
329 2cdn_A Adenylate kinase; phosp 95.0 0.014 4.9E-07 55.2 3.7 26 65-90 19-44 (201)
330 1ek0_A Protein (GTP-binding pr 94.9 0.01 3.5E-07 53.5 2.5 23 68-90 5-27 (170)
331 2r8r_A Sensor protein; KDPD, P 94.9 0.018 6.1E-07 56.3 4.4 75 184-266 80-176 (228)
332 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.011 3.6E-07 54.1 2.6 23 68-90 9-31 (177)
333 1c1y_A RAS-related protein RAP 94.9 0.01 3.6E-07 53.4 2.5 22 68-89 5-26 (167)
334 3pqc_A Probable GTP-binding pr 94.9 0.011 3.7E-07 54.9 2.6 23 68-90 25-47 (195)
335 1ky3_A GTP-binding protein YPT 94.9 0.011 3.7E-07 54.1 2.6 23 68-90 10-32 (182)
336 3fb4_A Adenylate kinase; psych 94.9 0.013 4.6E-07 55.9 3.3 22 68-89 2-23 (216)
337 1g16_A RAS-related protein SEC 94.9 0.0096 3.3E-07 53.8 2.1 23 68-90 5-27 (170)
338 1ukz_A Uridylate kinase; trans 94.9 0.015 5.1E-07 55.1 3.6 25 66-90 15-39 (203)
339 2pbr_A DTMP kinase, thymidylat 94.9 0.014 4.8E-07 54.4 3.3 23 68-90 2-24 (195)
340 2cxx_A Probable GTP-binding pr 94.8 0.012 4E-07 54.5 2.6 22 69-90 4-25 (190)
341 1zak_A Adenylate kinase; ATP:A 94.8 0.012 4E-07 56.8 2.7 26 65-90 4-29 (222)
342 1e6c_A Shikimate kinase; phosp 94.8 0.013 4.5E-07 53.7 2.8 24 67-90 3-26 (173)
343 2fn4_A P23, RAS-related protei 94.8 0.011 3.7E-07 54.1 2.2 22 68-89 11-32 (181)
344 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.017 5.8E-07 57.4 3.8 25 65-89 3-27 (260)
345 2hxs_A RAB-26, RAS-related pro 94.7 0.014 4.9E-07 53.2 3.0 23 68-90 8-30 (178)
346 4dsu_A GTPase KRAS, isoform 2B 94.7 0.013 4.3E-07 54.1 2.6 23 68-90 6-28 (189)
347 1moz_A ARL1, ADP-ribosylation 94.7 0.009 3.1E-07 55.0 1.6 22 67-88 19-40 (183)
348 1r2q_A RAS-related protein RAB 94.7 0.013 4.3E-07 52.9 2.5 22 68-89 8-29 (170)
349 1zuh_A Shikimate kinase; alpha 94.7 0.017 5.8E-07 52.9 3.4 23 67-89 8-30 (168)
350 3dl0_A Adenylate kinase; phosp 94.7 0.016 5.4E-07 55.5 3.3 23 68-90 2-24 (216)
351 3clv_A RAB5 protein, putative; 94.7 0.013 4.3E-07 54.5 2.6 23 68-90 9-31 (208)
352 2pt5_A Shikimate kinase, SK; a 94.7 0.017 5.9E-07 52.7 3.4 22 68-89 2-23 (168)
353 1qf9_A UMP/CMP kinase, protein 94.7 0.016 5.4E-07 53.9 3.2 24 66-89 6-29 (194)
354 1upt_A ARL1, ADP-ribosylation 94.7 0.013 4.5E-07 53.0 2.5 22 68-89 9-30 (171)
355 3t1o_A Gliding protein MGLA; G 94.7 0.014 4.7E-07 54.2 2.7 25 68-92 16-40 (198)
356 1wf3_A GTP-binding protein; GT 94.7 0.017 5.7E-07 59.0 3.5 26 64-90 6-31 (301)
357 2oil_A CATX-8, RAS-related pro 94.6 0.013 4.6E-07 54.5 2.5 23 68-90 27-49 (193)
358 3bc1_A RAS-related protein RAB 94.6 0.013 4.6E-07 54.0 2.5 23 68-90 13-35 (195)
359 3tlx_A Adenylate kinase 2; str 94.6 0.019 6.4E-07 56.5 3.7 25 65-89 28-52 (243)
360 1r8s_A ADP-ribosylation factor 94.6 0.014 4.8E-07 52.5 2.5 21 69-89 3-23 (164)
361 3t5d_A Septin-7; GTP-binding p 94.6 0.013 4.5E-07 58.6 2.6 24 68-91 10-33 (274)
362 2iyv_A Shikimate kinase, SK; t 94.6 0.014 5E-07 54.2 2.6 24 67-90 3-26 (184)
363 1ksh_A ARF-like protein 2; sma 94.5 0.018 6.2E-07 53.2 3.1 26 65-90 17-42 (186)
364 2g6b_A RAS-related protein RAB 94.5 0.015 5.2E-07 53.2 2.5 23 68-90 12-34 (180)
365 2a9k_A RAS-related protein RAL 94.5 0.015 5.2E-07 53.3 2.5 23 68-90 20-42 (187)
366 2y8e_A RAB-protein 6, GH09086P 94.5 0.014 4.7E-07 53.2 2.1 23 68-90 16-38 (179)
367 1z0f_A RAB14, member RAS oncog 94.5 0.016 5.3E-07 52.9 2.5 23 68-90 17-39 (179)
368 3iby_A Ferrous iron transport 94.5 0.016 5.6E-07 57.6 2.9 23 68-90 3-25 (256)
369 3cbq_A GTP-binding protein REM 94.5 0.015 5E-07 54.9 2.4 22 68-89 25-46 (195)
370 2qmh_A HPR kinase/phosphorylas 94.5 0.03 1E-06 53.6 4.5 38 53-91 22-59 (205)
371 3con_A GTPase NRAS; structural 94.4 0.016 5.4E-07 53.8 2.5 23 68-90 23-45 (190)
372 2efe_B Small GTP-binding prote 94.4 0.017 5.7E-07 52.9 2.6 23 68-90 14-36 (181)
373 2xtp_A GTPase IMAP family memb 94.4 0.018 6.2E-07 56.8 2.9 23 68-90 24-46 (260)
374 1uj2_A Uridine-cytidine kinase 94.3 0.021 7.3E-07 56.3 3.3 24 67-90 23-46 (252)
375 2bov_A RAla, RAS-related prote 94.3 0.017 5.8E-07 54.2 2.5 23 68-90 16-38 (206)
376 1nrj_B SR-beta, signal recogni 94.3 0.017 5.8E-07 55.0 2.5 23 68-90 14-36 (218)
377 1vg8_A RAS-related protein RAB 94.3 0.018 6E-07 54.2 2.6 23 68-90 10-32 (207)
378 2grj_A Dephospho-COA kinase; T 94.3 0.023 7.8E-07 54.1 3.3 25 65-89 11-35 (192)
379 1zbd_A Rabphilin-3A; G protein 94.3 0.022 7.5E-07 53.5 3.2 23 68-90 10-32 (203)
380 2il1_A RAB12; G-protein, GDP, 94.3 0.02 6.9E-07 53.5 2.9 23 68-90 28-50 (192)
381 2gf9_A RAS-related protein RAB 94.3 0.018 6.2E-07 53.5 2.5 23 68-90 24-46 (189)
382 2bme_A RAB4A, RAS-related prot 94.3 0.016 5.5E-07 53.4 2.1 23 68-90 12-34 (186)
383 3a1s_A Iron(II) transport prot 94.3 0.022 7.6E-07 56.6 3.3 23 68-90 7-29 (258)
384 3cnl_A YLQF, putative uncharac 94.3 0.022 7.6E-07 56.9 3.3 30 67-96 100-129 (262)
385 1jbk_A CLPB protein; beta barr 94.2 0.027 9.2E-07 51.7 3.6 27 64-90 41-67 (195)
386 3tkl_A RAS-related protein RAB 94.2 0.019 6.3E-07 53.4 2.5 23 68-90 18-40 (196)
387 2dby_A GTP-binding protein; GD 94.2 0.017 6E-07 60.6 2.5 21 69-89 4-24 (368)
388 4edh_A DTMP kinase, thymidylat 94.2 0.027 9.4E-07 54.4 3.7 29 64-92 4-32 (213)
389 2gf0_A GTP-binding protein DI- 94.2 0.017 5.9E-07 53.8 2.2 22 68-89 10-31 (199)
390 2xb4_A Adenylate kinase; ATP-b 94.2 0.025 8.5E-07 54.7 3.4 23 68-90 2-24 (223)
391 3v9p_A DTMP kinase, thymidylat 94.2 0.019 6.5E-07 56.2 2.6 29 63-91 22-50 (227)
392 4dhe_A Probable GTP-binding pr 94.2 0.012 4.2E-07 56.2 1.2 23 68-90 31-53 (223)
393 3kkq_A RAS-related protein M-R 94.2 0.025 8.6E-07 52.0 3.3 23 68-90 20-42 (183)
394 3i8s_A Ferrous iron transport 94.2 0.021 7.2E-07 57.3 2.9 23 68-90 5-27 (274)
395 3a8t_A Adenylate isopentenyltr 94.2 0.031 1.1E-06 57.8 4.2 27 65-91 39-65 (339)
396 1m7b_A RND3/RHOE small GTP-bin 94.1 0.018 6.1E-07 53.4 2.1 23 68-90 9-31 (184)
397 2fg5_A RAB-22B, RAS-related pr 94.1 0.018 6.2E-07 53.8 2.2 23 68-90 25-47 (192)
398 2qu8_A Putative nucleolar GTP- 94.1 0.023 8E-07 54.8 3.1 23 68-90 31-53 (228)
399 4bas_A ADP-ribosylation factor 94.1 0.024 8.1E-07 52.8 3.0 23 68-90 19-41 (199)
400 2h57_A ADP-ribosylation factor 94.1 0.018 6.1E-07 53.6 2.1 23 68-90 23-45 (190)
401 1mh1_A RAC1; GTP-binding, GTPa 94.1 0.021 7E-07 52.5 2.5 22 68-89 7-28 (186)
402 2o52_A RAS-related protein RAB 94.1 0.023 7.8E-07 53.6 2.9 23 68-90 27-49 (200)
403 3llu_A RAS-related GTP-binding 94.1 0.025 8.4E-07 53.1 3.1 25 68-92 22-46 (196)
404 1zj6_A ADP-ribosylation factor 94.1 0.023 7.9E-07 52.7 2.9 23 68-90 18-40 (187)
405 3be4_A Adenylate kinase; malar 94.1 0.024 8.3E-07 54.5 3.1 26 65-90 4-29 (217)
406 2cjw_A GTP-binding protein GEM 94.1 0.021 7.1E-07 53.7 2.5 22 68-89 8-29 (192)
407 1jwy_B Dynamin A GTPase domain 94.1 0.022 7.7E-07 57.8 2.9 24 68-91 26-49 (315)
408 1z06_A RAS-related protein RAB 94.1 0.021 7.3E-07 53.0 2.6 22 68-89 22-43 (189)
409 1a7j_A Phosphoribulokinase; tr 94.0 0.013 4.5E-07 59.4 1.2 25 65-89 4-28 (290)
410 2f7s_A C25KG, RAS-related prot 94.0 0.028 9.5E-07 53.5 3.3 24 68-91 27-50 (217)
411 2f6r_A COA synthase, bifunctio 94.0 0.025 8.5E-07 57.0 3.0 23 66-88 75-97 (281)
412 2a5j_A RAS-related protein RAB 94.0 0.023 7.7E-07 53.0 2.5 23 68-90 23-45 (191)
413 2h17_A ADP-ribosylation factor 94.0 0.022 7.4E-07 52.6 2.4 23 68-90 23-45 (181)
414 3oes_A GTPase rhebl1; small GT 93.9 0.02 6.9E-07 53.9 2.1 23 68-90 26-48 (201)
415 3bwd_D RAC-like GTP-binding pr 93.9 0.023 8E-07 52.0 2.5 23 68-90 10-32 (182)
416 3umf_A Adenylate kinase; rossm 93.9 0.033 1.1E-06 54.1 3.6 27 64-90 27-53 (217)
417 2wsm_A Hydrogenase expression/ 93.9 0.022 7.7E-07 54.3 2.4 24 67-90 31-54 (221)
418 1zd9_A ADP-ribosylation factor 93.9 0.024 8.1E-07 52.8 2.5 23 68-90 24-46 (188)
419 1x3s_A RAS-related protein RAB 93.9 0.024 8.2E-07 52.5 2.5 23 68-90 17-39 (195)
420 3dz8_A RAS-related protein RAB 93.9 0.021 7.3E-07 53.2 2.1 23 68-90 25-47 (191)
421 2atv_A RERG, RAS-like estrogen 93.9 0.025 8.4E-07 53.0 2.6 23 68-90 30-52 (196)
422 2q3h_A RAS homolog gene family 93.8 0.031 1.1E-06 52.4 3.2 23 68-90 22-44 (201)
423 2bcg_Y Protein YP2, GTP-bindin 93.8 0.022 7.4E-07 53.8 2.1 23 68-90 10-32 (206)
424 3reg_A RHO-like small GTPase; 93.8 0.025 8.4E-07 52.8 2.5 23 68-90 25-47 (194)
425 2p5s_A RAS and EF-hand domain 93.8 0.025 8.5E-07 53.2 2.5 23 68-90 30-52 (199)
426 3cph_A RAS-related protein SEC 93.8 0.025 8.4E-07 53.4 2.5 24 67-90 21-44 (213)
427 1ltq_A Polynucleotide kinase; 93.8 0.033 1.1E-06 56.2 3.5 23 67-89 3-25 (301)
428 3t5g_A GTP-binding protein RHE 93.8 0.028 9.5E-07 51.6 2.7 22 68-89 8-29 (181)
429 3lv8_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 54.9 3.2 27 65-91 26-52 (236)
430 1ak2_A Adenylate kinase isoenz 93.8 0.036 1.2E-06 53.9 3.6 26 65-90 15-40 (233)
431 1e4v_A Adenylate kinase; trans 93.7 0.03 1E-06 53.6 3.0 23 68-90 2-24 (214)
432 2j1l_A RHO-related GTP-binding 93.7 0.029 1E-06 53.5 2.9 23 68-90 36-58 (214)
433 2ew1_A RAS-related protein RAB 93.7 0.023 7.9E-07 53.9 2.1 23 68-90 28-50 (201)
434 2aka_B Dynamin-1; fusion prote 93.7 0.026 8.9E-07 56.7 2.6 24 68-91 28-51 (299)
435 2fu5_C RAS-related protein RAB 93.7 0.021 7.1E-07 52.6 1.6 23 68-90 10-32 (183)
436 2iwr_A Centaurin gamma 1; ANK 93.7 0.021 7.3E-07 52.2 1.7 22 68-89 9-30 (178)
437 2fv8_A H6, RHO-related GTP-bin 93.6 0.026 8.7E-07 53.5 2.2 23 68-90 27-49 (207)
438 3def_A T7I23.11 protein; chlor 93.6 0.031 1.1E-06 55.5 2.9 24 68-91 38-61 (262)
439 3zvl_A Bifunctional polynucleo 93.6 0.035 1.2E-06 59.2 3.5 27 64-90 256-282 (416)
440 2b6h_A ADP-ribosylation factor 93.6 0.029 9.8E-07 52.6 2.5 22 68-89 31-52 (192)
441 3c5c_A RAS-like protein 12; GD 93.6 0.03 1E-06 52.2 2.6 23 68-90 23-45 (187)
442 3exa_A TRNA delta(2)-isopenten 93.6 0.041 1.4E-06 56.4 3.8 26 66-91 3-28 (322)
443 4tmk_A Protein (thymidylate ki 93.6 0.037 1.2E-06 53.6 3.2 27 65-91 2-28 (213)
444 3tmk_A Thymidylate kinase; pho 93.5 0.037 1.3E-06 53.7 3.2 33 64-97 3-35 (216)
445 2p65_A Hypothetical protein PF 93.5 0.034 1.1E-06 51.0 2.8 28 64-91 41-68 (187)
446 2g3y_A GTP-binding protein GEM 93.5 0.039 1.3E-06 53.1 3.3 23 68-90 39-61 (211)
447 2fh5_B SR-beta, signal recogni 93.5 0.03 1E-06 53.0 2.5 23 68-90 9-31 (214)
448 4djt_A GTP-binding nuclear pro 93.5 0.02 6.7E-07 54.6 1.2 23 68-90 13-35 (218)
449 3ld9_A DTMP kinase, thymidylat 93.5 0.045 1.5E-06 53.4 3.7 28 64-91 19-46 (223)
450 1gwn_A RHO-related GTP-binding 93.5 0.027 9.4E-07 53.5 2.1 23 68-90 30-52 (205)
451 3d3q_A TRNA delta(2)-isopenten 93.4 0.038 1.3E-06 57.3 3.3 25 67-91 8-32 (340)
452 1h65_A Chloroplast outer envel 93.4 0.034 1.2E-06 55.4 2.9 23 68-90 41-63 (270)
453 1qvr_A CLPB protein; coiled co 93.4 0.074 2.5E-06 62.1 6.0 26 67-92 589-614 (854)
454 2ocp_A DGK, deoxyguanosine kin 93.4 0.042 1.4E-06 53.6 3.4 27 65-91 1-27 (241)
455 1p5z_B DCK, deoxycytidine kina 93.4 0.031 1.1E-06 55.4 2.4 28 64-91 22-49 (263)
456 1sky_E F1-ATPase, F1-ATP synth 93.3 0.048 1.6E-06 58.9 3.9 35 55-90 141-175 (473)
457 2gco_A H9, RHO-related GTP-bin 93.3 0.031 1E-06 52.7 2.1 23 68-90 27-49 (201)
458 3pxi_A Negative regulator of g 93.2 0.22 7.4E-06 57.2 9.6 23 68-90 523-545 (758)
459 2h92_A Cytidylate kinase; ross 93.1 0.043 1.5E-06 52.4 2.9 25 66-90 3-27 (219)
460 3tqf_A HPR(Ser) kinase; transf 93.1 0.074 2.5E-06 49.7 4.3 36 53-89 4-39 (181)
461 2x77_A ADP-ribosylation factor 93.1 0.029 9.8E-07 52.0 1.6 22 68-89 24-45 (189)
462 2atx_A Small GTP binding prote 93.1 0.035 1.2E-06 51.6 2.2 22 68-89 20-41 (194)
463 3sr0_A Adenylate kinase; phosp 93.1 0.051 1.7E-06 52.2 3.3 23 68-90 2-24 (206)
464 3crm_A TRNA delta(2)-isopenten 93.0 0.052 1.8E-06 55.9 3.5 25 67-91 6-30 (323)
465 2yc2_C IFT27, small RAB-relate 93.0 0.021 7.1E-07 53.6 0.5 22 68-89 22-43 (208)
466 3cpj_B GTP-binding protein YPT 92.9 0.043 1.5E-06 52.6 2.6 23 68-90 15-37 (223)
467 2hf9_A Probable hydrogenase ni 92.8 0.05 1.7E-06 52.0 3.0 24 67-90 39-62 (226)
468 2hup_A RAS-related protein RAB 92.8 0.041 1.4E-06 51.9 2.2 23 68-90 31-53 (201)
469 1puj_A YLQF, conserved hypothe 92.7 0.072 2.5E-06 53.7 4.0 27 67-93 121-147 (282)
470 3foz_A TRNA delta(2)-isopenten 92.7 0.068 2.3E-06 54.6 3.8 26 66-91 10-35 (316)
471 4dcu_A GTP-binding protein ENG 92.6 0.046 1.6E-06 59.0 2.5 53 175-232 89-142 (456)
472 4gzl_A RAS-related C3 botulinu 92.4 0.047 1.6E-06 51.6 2.1 22 68-89 32-53 (204)
473 3q3j_B RHO-related GTP-binding 92.4 0.053 1.8E-06 51.8 2.5 23 68-90 29-51 (214)
474 2j0v_A RAC-like GTP-binding pr 92.4 0.049 1.7E-06 51.5 2.1 23 68-90 11-33 (212)
475 3eph_A TRNA isopentenyltransfe 92.3 0.068 2.3E-06 56.7 3.3 26 66-91 2-27 (409)
476 2orw_A Thymidine kinase; TMTK, 92.2 0.073 2.5E-06 50.0 3.2 52 188-245 76-136 (184)
477 3dm5_A SRP54, signal recogniti 92.0 0.057 1.9E-06 58.0 2.4 28 65-92 99-126 (443)
478 3r7w_A Gtpase1, GTP-binding pr 92.0 0.1 3.4E-06 53.2 4.2 25 66-90 3-27 (307)
479 1g5t_A COB(I)alamin adenosyltr 91.9 0.13 4.5E-06 48.9 4.5 72 176-249 106-181 (196)
480 3euj_A Chromosome partition pr 91.7 0.25 8.6E-06 53.6 7.1 71 168-246 377-464 (483)
481 2x2e_A Dynamin-1; nitration, h 91.7 0.061 2.1E-06 55.9 2.1 23 68-90 33-55 (353)
482 2chg_A Replication factor C sm 91.6 0.091 3.1E-06 49.2 3.1 42 188-232 102-143 (226)
483 1ypw_A Transitional endoplasmi 91.6 0.026 9E-07 65.4 -0.9 32 59-90 504-535 (806)
484 4hlc_A DTMP kinase, thymidylat 91.5 0.11 3.8E-06 49.7 3.6 26 66-91 2-27 (205)
485 3th5_A RAS-related C3 botulinu 90.8 0.034 1.2E-06 52.3 0.0 22 68-89 32-53 (204)
486 1wxq_A GTP-binding protein; st 91.5 0.082 2.8E-06 56.0 2.9 79 149-240 181-262 (397)
487 3gmt_A Adenylate kinase; ssgci 91.4 0.098 3.4E-06 51.2 3.1 24 67-90 9-32 (230)
488 3syl_A Protein CBBX; photosynt 91.3 0.1 3.4E-06 52.6 3.3 27 64-90 65-91 (309)
489 3l0i_B RAS-related protein RAB 91.3 0.023 7.9E-07 53.4 -1.4 24 68-91 35-58 (199)
490 3p32_A Probable GTPase RV1496/ 91.1 0.12 4.2E-06 53.6 3.8 26 65-90 78-103 (355)
491 2hjg_A GTP-binding protein ENG 91.1 0.086 3E-06 56.4 2.6 23 68-90 5-27 (436)
492 3gj0_A GTP-binding nuclear pro 91.0 0.067 2.3E-06 51.0 1.5 22 68-89 17-39 (221)
493 1d2n_A N-ethylmaleimide-sensit 91.0 0.12 4.2E-06 51.1 3.5 26 64-89 62-87 (272)
494 2r62_A Cell division protease 90.9 0.059 2E-06 53.2 1.0 27 62-90 42-68 (268)
495 3uk6_A RUVB-like 2; hexameric 90.9 0.086 3E-06 54.5 2.3 29 64-92 68-96 (368)
496 2qgz_A Helicase loader, putati 90.9 0.13 4.4E-06 52.5 3.6 25 66-90 152-176 (308)
497 4a9a_A Ribosome-interacting GT 90.8 0.13 4.5E-06 54.0 3.6 37 68-104 74-121 (376)
498 1mky_A Probable GTP-binding pr 90.7 0.22 7.6E-06 53.3 5.4 23 68-90 3-25 (439)
499 2qpt_A EH domain-containing pr 90.7 0.11 3.6E-06 57.6 2.9 24 67-90 66-89 (550)
500 2v3c_C SRP54, signal recogniti 90.7 0.033 1.1E-06 59.8 -1.2 33 67-99 100-132 (432)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.2e-52 Score=440.95 Aligned_cols=226 Identities=27% Similarity=0.401 Sum_probs=203.8
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
...+|+++||+++|.. +.+.+.+|+||||++++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 21 ~~~mi~v~~ls~~y~~-------------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i 87 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQ-------------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87 (366)
T ss_dssp --CCEEEEEEEEEEEC-------------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCceEEEEeEEEEeCC-------------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 3447999999999952 123467999999999999999999999999999999999999999999999
Q ss_pred CCeeCCc---c---cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCH
Q 007383 100 NSSPIKP---S---SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG 173 (605)
Q Consensus 100 ~g~~~~~---~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSg 173 (605)
+|+++.. . ..|+.+|||+|++.+++.+||+||+.++....+.++++.+++++++++.+||.+..++. +.+|||
T Consensus 88 ~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LSG 166 (366)
T 3tui_C 88 DGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-PSNLSG 166 (366)
T ss_dssp TTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-TTTSCH
T ss_pred CCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCH
Confidence 9999852 1 24678999999999999999999999987765556677788999999999999888877 599999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++ ++.++|||+++|++|++++.
T Consensus 167 GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~ 245 (366)
T 3tui_C 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQ 245 (366)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999998777999999999998 58899999999999999999
Q ss_pred cChhhHH
Q 007383 254 GTLASLE 260 (605)
Q Consensus 254 g~~~~~~ 260 (605)
|+++++.
T Consensus 246 g~~~ev~ 252 (366)
T 3tui_C 246 DTVSEVF 252 (366)
T ss_dssp CBHHHHH
T ss_pred cCHHHHH
Confidence 9998873
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.3e-52 Score=436.31 Aligned_cols=219 Identities=28% Similarity=0.422 Sum_probs=200.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 4 ~l~i~~ls~~y-----------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 66 (359)
T 3fvq_A 4 ALHIGHLSKSF-----------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK 66 (359)
T ss_dssp CEEEEEEEEEE-----------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEeEEEEE-----------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE
Confidence 59999999999 4578999999999999999999999999999999999999999999999999
Q ss_pred eC----Cc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 007383 103 PI----KP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~----~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq 177 (605)
++ .. ...++.+|||+|++.++|.+||+||+.|+......++++.+++++++++.+||.+..+++ +.+|||||||
T Consensus 67 ~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSGGq~Q 145 (359)
T 3fvq_A 67 TIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY-PHELSGGQQQ 145 (359)
T ss_dssp EEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSC-GGGSCHHHHH
T ss_pred ECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCC-hhhCCHHHHH
Confidence 87 21 234578999999999999999999999987654445566778899999999999988888 5999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|+|||++|||.+ ++..++|||++|++|+++..|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999999999999998887777999999999998 689999999999999999999999
Q ss_pred hHH
Q 007383 258 SLE 260 (605)
Q Consensus 258 ~~~ 260 (605)
++.
T Consensus 225 el~ 227 (359)
T 3fvq_A 225 ELY 227 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.2e-51 Score=422.14 Aligned_cols=221 Identities=28% Similarity=0.424 Sum_probs=197.6
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||+++|. +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 6 ~~l~i~~ls~~y~----------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G 69 (275)
T 3gfo_A 6 YILKVEELNYNYS----------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN 69 (275)
T ss_dssp EEEEEEEEEEECT----------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cEEEEEEEEEEEC----------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECC
Confidence 3699999999993 234599999999999999999999999999999999999999999999999
Q ss_pred eeCCc-----ccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 102 SPIKP-----SSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 102 ~~~~~-----~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
+++.. ..+++.+|||+|++ ..+..+||+||+.++....+.+.++.+++++++++.+||.+..++. +.+|||||
T Consensus 70 ~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSgGq 148 (275)
T 3gfo_A 70 KPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP-THCLSFGQ 148 (275)
T ss_dssp EECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB-GGGSCHHH
T ss_pred EECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-cccCCHHH
Confidence 99841 23567899999986 3344789999999987765556667788899999999999888877 49999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++. +.++|||+++|++|++++.|+
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999973348999999999984 788999999999999999999
Q ss_pred hhhHH
Q 007383 256 LASLE 260 (605)
Q Consensus 256 ~~~~~ 260 (605)
++++.
T Consensus 228 ~~~~~ 232 (275)
T 3gfo_A 228 PKEVF 232 (275)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99874
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.6e-51 Score=417.27 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 24 ~l~i~~l~~~y-----------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 86 (263)
T 2olj_A 24 MIDVHQLKKSF-----------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGI 86 (263)
T ss_dssp SEEEEEEEEEE-----------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred eEEEEeEEEEE-----------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCE
Confidence 69999999999 3467999999999999999999999999999999999999999999999999
Q ss_pred eCC--c---ccccCceEEEcCCCCCCCCCCHHHHHHHHH-hcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH
Q 007383 103 PIK--P---SSFRKLSAYVPQHDACIPSLTVYETFLFSA-RLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER 176 (605)
Q Consensus 103 ~~~--~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer 176 (605)
++. . ..+++.+|||+|++.+++.+||+||+.++. ...+.+.++.+++++++++.+||.+..++. +.+||||||
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSgGqk 165 (263)
T 2olj_A 87 NLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-PDSLSGGQA 165 (263)
T ss_dssp ESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCHHHH
T ss_pred ECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-hhhCCHHHH
Confidence 874 1 124567999999999999999999999965 333334445567899999999999888877 499999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecCh
Q 007383 177 RRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTL 256 (605)
Q Consensus 177 qRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~ 256 (605)
|||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||++ ++.++||++++|++|++++.|++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999765 899999999997 47889999999999999999999
Q ss_pred hhHH
Q 007383 257 ASLE 260 (605)
Q Consensus 257 ~~~~ 260 (605)
+++.
T Consensus 244 ~~~~ 247 (263)
T 2olj_A 244 EDLF 247 (263)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2e-51 Score=436.15 Aligned_cols=219 Identities=28% Similarity=0.440 Sum_probs=202.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~y-----------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 65 (381)
T 3rlf_A 3 SVQLQNVTKAW-----------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 65 (381)
T ss_dssp CEEEEEEEEEE-----------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEeEEEEE-----------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCE
Confidence 48999999999 4577999999999999999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++.. ...++.+|||+|++.++|.+||+||+.|+.+..+.++++.+++++++++.++|.+..+++ +++|||||||||+|
T Consensus 66 ~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-p~~LSGGqrQRVai 144 (381)
T 3rlf_A 66 RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-PKALSGGQRQRVAI 144 (381)
T ss_dssp ECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCC-GGGSCHHHHHHHHH
T ss_pred ECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhHCCHHHHHHHHH
Confidence 9853 234567999999999999999999999998766556677788999999999999988887 59999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||||+.+|++|||||||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++..++|||++|++|+++..|+++++.
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999999999999999999998766899999999998 689999999999999999999999874
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.5e-51 Score=411.29 Aligned_cols=221 Identities=27% Similarity=0.399 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|.. +...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 1 ~l~~~~l~~~y~~-------------~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 67 (235)
T 3tif_A 1 MVKLKNVTKTYKM-------------GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNI 67 (235)
T ss_dssp CEEEEEEEEEEEE-------------TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CEEEEEEEEEeCC-------------CCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCE
Confidence 4899999999952 112356999999999999999999999999999999999999999999999999
Q ss_pred eCCcc---c----ccCceEEEcCCCCCCCCCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHHcCCcccc-cccccCCC
Q 007383 103 PIKPS---S----FRKLSAYVPQHDACIPSLTVYETFLFSARLL---VPKTSQIDTIITVLLTELRLAHLA-STRLAHNL 171 (605)
Q Consensus 103 ~~~~~---~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~---~~~~~~~~~~v~~~l~~l~L~~~~-~~~~~~~L 171 (605)
++... . .++.+|||+|++.+++.+||+||+.++.... ..+.++..+++.++++.+++.+.. ++. +.+|
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~L 146 (235)
T 3tif_A 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-PNQL 146 (235)
T ss_dssp ECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-GGGS
T ss_pred EcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-hhhC
Confidence 87421 1 1346999999999999999999999986542 234556677899999999998754 666 5999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++.|+|||++|||++ +.++||++++|++|+++
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999998665899999999986 45899999999999999
Q ss_pred EecChhhH
Q 007383 252 HHGTLASL 259 (605)
Q Consensus 252 ~~g~~~~~ 259 (605)
..++++++
T Consensus 225 ~~~~~~~~ 232 (235)
T 3tif_A 225 REEKLRGF 232 (235)
T ss_dssp EEEECC--
T ss_pred EEcChhhh
Confidence 99988765
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-51 Score=415.42 Aligned_cols=218 Identities=26% Similarity=0.375 Sum_probs=195.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 6 ~l~i~~l~~~y-----------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~ 68 (262)
T 1b0u_A 6 KLHVIDLHKRY-----------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQ 68 (262)
T ss_dssp CEEEEEEEEEE-----------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred eEEEeeEEEEE-----------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 59999999999 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCc----------------ccccCceEEEcCCCCCCCCCCHHHHHHHHH-hcCCCChhHHHHHHHHHHHHcCCccc-cc
Q 007383 103 PIKP----------------SSFRKLSAYVPQHDACIPSLTVYETFLFSA-RLLVPKTSQIDTIITVLLTELRLAHL-AS 164 (605)
Q Consensus 103 ~~~~----------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~v~~~l~~l~L~~~-~~ 164 (605)
++.. ..+++.+|||+|++.+++.+||+||+.++. ...+.+.++.+++++++++.+||.+. .+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 69 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp ECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred EccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 8751 124567999999999999999999999964 33333444556789999999999988 77
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 165 TRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 165 ~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
+. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||++ ++.++||++++
T Consensus 149 ~~-~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v~~ 225 (262)
T 1b0u_A 149 KY-PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG-FARHVSSHVIF 225 (262)
T ss_dssp SC-GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH-HHHHHCSEEEE
T ss_pred CC-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 77 4999999999999999999999999999999999999999999999999865 899999999997 47889999999
Q ss_pred EeCCeEEEecChhhHH
Q 007383 245 LSKGSVVHHGTLASLE 260 (605)
Q Consensus 245 l~~G~iv~~g~~~~~~ 260 (605)
|++|+++..|+++++.
T Consensus 226 l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 226 LHQGKIEEEGDPEQVF 241 (262)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998764
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.9e-51 Score=415.13 Aligned_cols=217 Identities=28% Similarity=0.394 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||++.| +.+.+|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~-----------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 10 ALLEASHLHYHV-----------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp CEEEEEEEEEEE-----------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred ceEEEEeEEEEe-----------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 479999999999 457899999999999999999999999999999999999999999999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
+++.. ...++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+++.+..++.+ ++||||||||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgGq~QR 149 (266)
T 4g1u_C 73 QNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDY-RVLSGGEQQR 149 (266)
T ss_dssp EETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBG-GGCCHHHHHH
T ss_pred EECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCc-ccCCHHHHHH
Confidence 99753 345667999999998888899999999876543 22345678899999999998888774 9999999999
Q ss_pred HHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 179 VSIGLSLLH------DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 179 v~ia~aL~~------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
|+|||||+. +|++|||||||+|||+.++.+++++|+++++++++|||++|||++ ++.++|||+++|++|++++
T Consensus 150 v~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 150 VQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999999999999999999998776789999999998 5888999999999999999
Q ss_pred ecChhhH
Q 007383 253 HGTLASL 259 (605)
Q Consensus 253 ~g~~~~~ 259 (605)
.|+++++
T Consensus 229 ~g~~~~~ 235 (266)
T 4g1u_C 229 CGTPEEV 235 (266)
T ss_dssp EECHHHH
T ss_pred EcCHHHH
Confidence 9999886
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.2e-50 Score=403.42 Aligned_cols=212 Identities=31% Similarity=0.434 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 4 ~l~~~~l~~~y-----------------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 66 (224)
T 2pcj_A 4 ILRAENIKKVI-----------------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGK 66 (224)
T ss_dssp EEEEEEEEEEE-----------------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEEEeEEEEE-----------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 59999999999 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCcc------ccc-CceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKPS------SFR-KLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~~------~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++... .++ +.++||+|++.+++.+||+||+.++....+.+.++.+++++++++.+||.+..++. +.+|||||
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgGq 145 (224)
T 2pcj_A 67 EVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK-PYELSGGE 145 (224)
T ss_dssp ECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSCHHH
T ss_pred ECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCHHH
Confidence 87431 123 67999999999999999999999976554334445567889999999999888877 49999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ .+ ++||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999999999876 899999999986 35 8999999999999999885
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-50 Score=409.76 Aligned_cols=219 Identities=28% Similarity=0.424 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 15 ~l~i~~l~~~y-----------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 77 (256)
T 1vpl_A 15 AVVVKDLRKRI-----------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK 77 (256)
T ss_dssp CEEEEEEEEEE-----------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred eEEEEEEEEEE-----------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 59999999999 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 103 PIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
++.. ...++.+|||+|++.+++.+||+||+.+.....+.+.++.+++++++++.+||.+..++++ .+|||||||||+
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~LSgGq~qRv~ 156 (256)
T 1vpl_A 78 NVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV-STYSKGMVRKLL 156 (256)
T ss_dssp ETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG-GGCCHHHHHHHH
T ss_pred ECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCCh-hhCCHHHHHHHH
Confidence 8753 2356789999999999999999999999765433344445677899999999998888774 999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|++++.|+++++.
T Consensus 157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999764 899999999997 478889999999999999999998875
Q ss_pred H
Q 007383 261 T 261 (605)
Q Consensus 261 ~ 261 (605)
+
T Consensus 235 ~ 235 (256)
T 1vpl_A 235 E 235 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-50 Score=411.62 Aligned_cols=216 Identities=23% Similarity=0.381 Sum_probs=193.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 7 ~l~i~~l~~~y-----------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~ 69 (257)
T 1g6h_A 7 ILRTENIVKYF-----------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 69 (257)
T ss_dssp EEEEEEEEEEE-----------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEEeeeEEEE-----------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 69999999999 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCcc----cccCceEEEcCCCCCCCCCCHHHHHHHHHhc--CC-----------CChhHHHHHHHHHHHHcCCcccccc
Q 007383 103 PIKPS----SFRKLSAYVPQHDACIPSLTVYETFLFSARL--LV-----------PKTSQIDTIITVLLTELRLAHLAST 165 (605)
Q Consensus 103 ~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~--~~-----------~~~~~~~~~v~~~l~~l~L~~~~~~ 165 (605)
++... ..++.+|||+|++.+++.+||+||+.++... .+ ...++.+++++++++.+||.+..++
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 149 (257)
T 1g6h_A 70 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR 149 (257)
T ss_dssp ECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS
T ss_pred ECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCC
Confidence 87431 2356799999999999999999999987543 12 2234456788999999999988888
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||++ ++.++||++++|
T Consensus 150 ~~-~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v~~l 226 (257)
T 1g6h_A 150 KA-GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLD-IVLNYIDHLYVM 226 (257)
T ss_dssp BG-GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred Cc-hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEE
Confidence 74 999999999999999999999999999999999999999999999999765 899999999998 478899999999
Q ss_pred eCCeEEEecChhh
Q 007383 246 SKGSVVHHGTLAS 258 (605)
Q Consensus 246 ~~G~iv~~g~~~~ 258 (605)
++|++++.|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999999888
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.1e-50 Score=425.78 Aligned_cols=222 Identities=25% Similarity=0.418 Sum_probs=201.1
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
...|+++||+++|+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++
T Consensus 12 ~~~l~~~~l~~~y~----------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 75 (355)
T 1z47_A 12 SMTIEFVGVEKIYP----------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIG 75 (355)
T ss_dssp CEEEEEEEEEECCT----------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred CceEEEEEEEEEEc----------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Confidence 45799999999882 23569999999999999999999999999999999999999999999999
Q ss_pred CeeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 101 SSPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 101 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
|+++.. ...++.+|||+|+..+++.+||+||+.|+....+.++++.+++++++++.+||.+..+++ +.+|||||||||
T Consensus 76 g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSGGq~QRv 154 (355)
T 1z47_A 76 GKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF-PHELSGGQQQRV 154 (355)
T ss_dssp TEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCHHHHHHH
T ss_pred CEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC-cccCCHHHHHHH
Confidence 998753 234678999999999999999999999987654445556678899999999999988887 599999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||++ ++..++|++++|++|+++..|+++++
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999998766899999999997 58899999999999999999999887
Q ss_pred H
Q 007383 260 E 260 (605)
Q Consensus 260 ~ 260 (605)
.
T Consensus 234 ~ 234 (355)
T 1z47_A 234 Y 234 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2e-50 Score=426.84 Aligned_cols=219 Identities=24% Similarity=0.391 Sum_probs=198.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~y-----------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 65 (359)
T 2yyz_A 3 SIRVVNLKKYF-----------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDV 65 (359)
T ss_dssp CEEEEEEEEEE-----------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEEEEEEE-----------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCE
Confidence 48999999999 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++.. ...++.+|||+|+..+++.+||+||+.|+.+..+.++++.+++++++++.+||.+..+++ +++|||||||||+|
T Consensus 66 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSgGq~QRval 144 (359)
T 2yyz_A 66 LVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK-PTQLSGGQQQRVAL 144 (359)
T ss_dssp ECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSC-GGGSCHHHHHHHHH
T ss_pred ECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCHHHHHHHHH
Confidence 9753 233577999999999999999999999986554333444567899999999999988887 59999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||||+.+|++|||||||+|||+..+.++.+.|++++++.|.|+|++|||++ ++..++|++++|++|+++..|+++++.
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999998766899999999987 588999999999999999999999874
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.7e-50 Score=426.34 Aligned_cols=219 Identities=29% Similarity=0.428 Sum_probs=199.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~y-----------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 65 (362)
T 2it1_A 3 EIKLENIVKKF-----------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEK 65 (362)
T ss_dssp CEEEEEEEEES-----------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEeEEEEE-----------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCE
Confidence 48999999998 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++.. ...++.+|||+|+..+++.+||+||+.|+....+.++++.+++++++++.+||.+..+++ +++|||||||||+|
T Consensus 66 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSGGq~QRval 144 (362)
T 2it1_A 66 DVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY-PWQLSGGQQQRVAI 144 (362)
T ss_dssp ECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSCHHHHHHHHH
T ss_pred ECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCC-hhhCCHHHHHHHHH
Confidence 8753 223577999999999999999999999987654445556678899999999999888877 59999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||++ ++..++|++++|++|+++..|+++++.
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999997666899999999987 588999999999999999999999874
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.8e-50 Score=427.20 Aligned_cols=219 Identities=25% Similarity=0.413 Sum_probs=199.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~y-----------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 65 (372)
T 1g29_1 3 GVRLVDVWKVF-----------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDK 65 (372)
T ss_dssp EEEEEEEEEEE-----------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEeEEEEE-----------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCE
Confidence 58999999999 3467999999999999999999999999999999999999999999999998
Q ss_pred eCCc-------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH
Q 007383 103 PIKP-------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE 175 (605)
Q Consensus 103 ~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe 175 (605)
++.. ...++.+|||+|+..+++.+||+||+.|+....+.++++.+++++++++.+||.+..+++ +++|||||
T Consensus 66 ~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSGGq 144 (372)
T 1g29_1 66 LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-PRELSGGQ 144 (372)
T ss_dssp EEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-GGGSCHHH
T ss_pred ECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-cccCCHHH
Confidence 8632 123577999999999999999999999987655445556678899999999999988887 59999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 176 RRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 176 rqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|.|||++|||++ ++..++|++++|++|+++..|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999999999999999998766899999999987 5889999999999999999999
Q ss_pred hhhHH
Q 007383 256 LASLE 260 (605)
Q Consensus 256 ~~~~~ 260 (605)
++++.
T Consensus 224 ~~~l~ 228 (372)
T 1g29_1 224 PDEVY 228 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.9e-50 Score=427.00 Aligned_cols=219 Identities=26% Similarity=0.422 Sum_probs=199.1
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCce--eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTY--ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
+|+++||+++|. .+. +|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++
T Consensus 3 ~l~i~~l~~~y~-----------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 65 (353)
T 1oxx_K 3 RIIVKNVSKVFK-----------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65 (353)
T ss_dssp CEEEEEEEEEEG-----------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEEeEEEEEC-----------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Confidence 489999999992 355 9999999999999999999999999999999999999999999999
Q ss_pred CeeCCc------ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHH
Q 007383 101 SSPIKP------SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG 174 (605)
Q Consensus 101 g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG 174 (605)
|+++.. ...++.+|||+|+..+++.+||+||+.|+....+.+.++.+++++++++.+||.+..+++ +++||||
T Consensus 66 g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-~~~LSGG 144 (353)
T 1oxx_K 66 DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-PRELSGA 144 (353)
T ss_dssp TEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCHH
T ss_pred CEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCHH
Confidence 988632 234678999999999999999999999987654445556678899999999999988887 5999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
|||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|||++|||++ ++..++|++++|++|+++..|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999999999999997666899999999997 588999999999999999999
Q ss_pred ChhhHH
Q 007383 255 TLASLE 260 (605)
Q Consensus 255 ~~~~~~ 260 (605)
+++++.
T Consensus 224 ~~~~l~ 229 (353)
T 1oxx_K 224 KPEDLY 229 (353)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998874
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.8e-50 Score=425.79 Aligned_cols=219 Identities=25% Similarity=0.401 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 11 ~l~~~~l~~~y-----------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 73 (372)
T 1v43_A 11 EVKLENLTKRF-----------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDR 73 (372)
T ss_dssp CEEEEEEEEEE-----------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred eEEEEEEEEEE-----------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCE
Confidence 49999999999 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++.. ...++.+|||+|+..+++.+||+||+.|+....+.++++.+++++++++.++|.+..+++ +++|||||||||+|
T Consensus 74 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSGGq~QRval 152 (372)
T 1v43_A 74 DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY-PAQLSGGQRQRVAV 152 (372)
T ss_dssp ECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSC-TTTCCSSCHHHHHH
T ss_pred ECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCC-hhhCCHHHHHHHHH
Confidence 8753 223577999999999999999999999986544445556678899999999999988887 59999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||||+.+|++|||||||+|||+..+.++.+.|+++.++.|.|+|++|||.+ ++..++|++++|++|+++..|+++++.
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999998766899999999987 588999999999999999999999874
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.6e-50 Score=401.41 Aligned_cols=217 Identities=25% Similarity=0.378 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 6 ~l~~~~l~~~y-----------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 68 (240)
T 1ji0_A 6 VLEVQSLHVYY-----------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68 (240)
T ss_dssp EEEEEEEEEEE-----------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred eEEEEeEEEEE-----------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 69999999999 3467999999999999999999999999999999999999999999999999
Q ss_pred eCCcc---c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-CcccccccccCCCCHHHHH
Q 007383 103 PIKPS---S-FRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELR-LAHLASTRLAHNLSGGERR 177 (605)
Q Consensus 103 ~~~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~~~~~LSgGerq 177 (605)
++... . .++.+|||+|++.+++.+||+||+.++.... ...++.+++++++++.++ +.+..++. +.+|||||||
T Consensus 69 ~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~-~~~LSgGq~q 146 (240)
T 1ji0_A 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQL-GGTLSGGEQQ 146 (240)
T ss_dssp ECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHTTTTSB-SSSSCHHHHH
T ss_pred ECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC-CCHHHHHHHHHHHHHHcccHhhHhcCC-hhhCCHHHHH
Confidence 87431 1 2456999999999999999999999864221 123345677888999995 98877777 4999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLA 257 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~ 257 (605)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+++
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 224 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKAS 224 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999976 5899999999987 478999999999999999999988
Q ss_pred hHH
Q 007383 258 SLE 260 (605)
Q Consensus 258 ~~~ 260 (605)
++.
T Consensus 225 ~~~ 227 (240)
T 1ji0_A 225 ELL 227 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 763
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=9e-50 Score=420.45 Aligned_cols=215 Identities=28% Similarity=0.430 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +.+ +|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 1 ml~~~~l~~~y-----------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~ 62 (348)
T 3d31_A 1 MIEIESLSRKW-----------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGK 62 (348)
T ss_dssp CEEEEEEEEEC-----------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CEEEEEEEEEE-----------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCE
Confidence 47899999998 345 999999999999999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++.. ...++.+|||+|+..+++.+||+||+.|+....+.+++ ++++++++.++|.+..+++ +++|||||||||+|
T Consensus 63 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~-~~~LSgGq~QRval 138 (348)
T 3d31_A 63 DVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRN-PLTLSGGEQQRVAL 138 (348)
T ss_dssp ECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSC-GGGSCHHHHHHHHH
T ss_pred ECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCC-hhhCCHHHHHHHHH
Confidence 8753 23456799999999999999999999998764322222 7789999999999988887 49999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|||++|||++ ++..++|++++|++|+++..|+++++.
T Consensus 139 AraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998777899999999987 588999999999999999999998873
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-49 Score=403.18 Aligned_cols=223 Identities=26% Similarity=0.405 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|... +...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 2 ~l~~~~l~~~y~~~------------~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~ 69 (266)
T 2yz2_A 2 RIEVVNVSHIFHRG------------TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE 69 (266)
T ss_dssp CEEEEEEEEEESTT------------STTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEEEEEEEEecCC------------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCE
Confidence 58999999999300 000157999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc--ccccccccCCCCHHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA--HLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~~LSgGerqRv 179 (605)
++....+++.+|||+|++ ..++.+||+||+.++.... .+.++.+++++++++.+||. +..++. +++|||||||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~LSgGq~qRv 147 (266)
T 2yz2_A 70 RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRV-PFFLSGGEKRRV 147 (266)
T ss_dssp ECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCC-GGGSCHHHHHHH
T ss_pred ECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCC-hhhCCHHHHHHH
Confidence 875334567899999995 4666799999999875432 22233456788999999998 887777 499999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++. +.++||++++|++|+++..|+++++
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999765 8999999999984 7789999999999999999998887
Q ss_pred HH
Q 007383 260 ET 261 (605)
Q Consensus 260 ~~ 261 (605)
.+
T Consensus 226 ~~ 227 (266)
T 2yz2_A 226 LE 227 (266)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-49 Score=400.07 Aligned_cols=214 Identities=27% Similarity=0.434 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++| +. +|+|+|+++++ |+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 1 ml~~~~l~~~y-----------------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 60 (240)
T 2onk_A 1 MFLKVRAEKRL-----------------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA 60 (240)
T ss_dssp CCEEEEEEEEE-----------------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CEEEEEEEEEe-----------------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 37899999998 22 49999999999 999999999999999999999999999999999999
Q ss_pred eCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++.. ...++.+|||+|++.+++.+||+||+.++....+ ....+++++++++.+||.+..++. +++|||||||||+|
T Consensus 61 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgGqkqRv~l 137 (240)
T 2onk_A 61 DITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRK-PARLSGGERQRVAL 137 (240)
T ss_dssp ECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCC-GGGSCHHHHHHHHH
T ss_pred ECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCC-hhhCCHHHHHHHHH
Confidence 8742 2346779999999999999999999998754322 122367789999999999888777 49999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLE 260 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~ 260 (605)
||||+.+|++|||||||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||++++|++|++++.|+++++.
T Consensus 138 Aral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999997655889999999987 478899999999999999999998764
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.3e-49 Score=406.43 Aligned_cols=218 Identities=28% Similarity=0.357 Sum_probs=190.0
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|
T Consensus 20 ~~l~~~~l~~~y-----------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 82 (279)
T 2ihy_A 20 MLIQLDQIGRMK-----------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82 (279)
T ss_dssp EEEEEEEEEEEE-----------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred ceEEEEeEEEEE-----------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC
Confidence 469999999999 346799999999999999999999999999999999999999999999999
Q ss_pred eeCC--c---ccccCceEEEcCCCCC--CCCCCHHHHHHHHHhc----CCCChhHHHHHHHHHHHHcCCcccccccccCC
Q 007383 102 SPIK--P---SSFRKLSAYVPQHDAC--IPSLTVYETFLFSARL----LVPKTSQIDTIITVLLTELRLAHLASTRLAHN 170 (605)
Q Consensus 102 ~~~~--~---~~~~~~i~yv~Q~~~l--~~~lTv~e~l~~~~~~----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~ 170 (605)
+++. . ..+++.+|||+|++.+ .+.+||+||+.++... .+...++.+++++++++.+||.+..++.+ .+
T Consensus 83 ~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~ 161 (279)
T 2ihy_A 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-GY 161 (279)
T ss_dssp BCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-GG
T ss_pred EEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-hh
Confidence 8874 2 3456789999998754 3357999999886321 11123345677899999999998888874 99
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEeCCCChHHHhcCCeEEEEeCC
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTV--ILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~ti--i~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|| |++|||++ ++.++||++++|++|
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~-~~~~~~d~v~~l~~G 239 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIE-EITANFSKILLLKDG 239 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG-GCCTTCCEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999876 8899 99999998 477899999999999
Q ss_pred eEEEecChhhH
Q 007383 249 SVVHHGTLASL 259 (605)
Q Consensus 249 ~iv~~g~~~~~ 259 (605)
++++.|+++++
T Consensus 240 ~i~~~g~~~~~ 250 (279)
T 2ihy_A 240 QSIQQGAVEDI 250 (279)
T ss_dssp EEEEEEEHHHH
T ss_pred EEEEECCHHHH
Confidence 99999998876
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.9e-48 Score=391.67 Aligned_cols=216 Identities=26% Similarity=0.295 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEEC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSAR--TSPTNGTILLN 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~--~~~~~G~I~~~ 100 (605)
+|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+ ++|++|+|.++
T Consensus 3 ~l~~~~l~~~y-----------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 3 QLEIRDLWASI-----------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp EEEEEEEEEEE-----------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred eEEEEeEEEEE-----------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 58999999999 346799999999999999999999999999999999998 78999999999
Q ss_pred CeeCCcc---c-ccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CC--CChhHHHHHHHHHHHHcCC-cccccccccCC-C
Q 007383 101 SSPIKPS---S-FRKLSAYVPQHDACIPSLTVYETFLFSARL-LV--PKTSQIDTIITVLLTELRL-AHLASTRLAHN-L 171 (605)
Q Consensus 101 g~~~~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~--~~~~~~~~~v~~~l~~l~L-~~~~~~~~~~~-L 171 (605)
|+++... . .++.++||+|++.+++.+||+||+.+.... .. ...++..++++++++.+|+ .+..++.+ .+ |
T Consensus 66 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~L 144 (250)
T 2d2e_A 66 GENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-NEGF 144 (250)
T ss_dssp TEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-TCC-
T ss_pred CEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-ccCC
Confidence 9987421 1 234589999999999999999999987532 11 1233446778999999999 57777774 77 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc-CCeEEEEeCCeE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST-IDRILLLSKGSV 250 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~d~v~~l~~G~i 250 (605)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++. +..+ +|++++|++|++
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~-~~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRI-LNYIQPDKVHVMMDGRV 222 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGG-GGTSCCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH-HHHhcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999965 48999999999984 6677 599999999999
Q ss_pred EEecChhh
Q 007383 251 VHHGTLAS 258 (605)
Q Consensus 251 v~~g~~~~ 258 (605)
++.|+++.
T Consensus 223 ~~~g~~~~ 230 (250)
T 2d2e_A 223 VATGGPEL 230 (250)
T ss_dssp EEEESHHH
T ss_pred EEEeCHHH
Confidence 99999873
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-47 Score=387.90 Aligned_cols=208 Identities=27% Similarity=0.440 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.
T Consensus 4 ~l~i~~l~~~y~----------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQ----------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE---- 63 (253)
T ss_dssp EEEEEEEEEEET----------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE----
T ss_pred eEEEeeEEEEeC----------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----
Confidence 599999999982 146799999999999999999999999999999999999999999998
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-C---CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL-V---PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~---~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
.++.+|||+|++.+++.+||+||+.++.... + ....+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 64 ------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgGq~qr 136 (253)
T 2nq2_C 64 ------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-TSLSGGQRQL 136 (253)
T ss_dssp ------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-GGSCHHHHHH
T ss_pred ------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-hhCCHHHHHH
Confidence 3467999999999988999999999875321 1 123344677899999999998888774 9999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhh
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLAS 258 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~ 258 (605)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|+ ++.|++++
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 137 ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp HHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHH
Confidence 999999999999999999999999999999999999998655899999999997 4778999999999999 99999887
Q ss_pred H
Q 007383 259 L 259 (605)
Q Consensus 259 ~ 259 (605)
+
T Consensus 215 ~ 215 (253)
T 2nq2_C 215 I 215 (253)
T ss_dssp H
T ss_pred H
Confidence 6
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.8e-48 Score=394.70 Aligned_cols=219 Identities=26% Similarity=0.424 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||++.|. +.+.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+
T Consensus 16 ~l~~~~l~~~y~--------------~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 81 (271)
T 2ixe_A 16 LVKFQDVSFAYP--------------NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGE 81 (271)
T ss_dssp CEEEEEEEECCT--------------TCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred eEEEEEEEEEeC--------------CCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 599999999883 101256999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhH-----HHHHHHHHHHHc--CCcccccccccCCCC
Q 007383 103 PIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQ-----IDTIITVLLTEL--RLAHLASTRLAHNLS 172 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~-----~~~~v~~~l~~l--~L~~~~~~~~~~~LS 172 (605)
++.. ..+++.+|||+|++.+++ .||+||+.++..... ..++ ....++++++.+ |+....++. +.+||
T Consensus 82 ~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-~~~LS 158 (271)
T 2ixe_A 82 PLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGET-GNQLS 158 (271)
T ss_dssp EGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-GTTSC
T ss_pred EcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-cCCCC
Confidence 8742 235667999999998887 599999998643221 1011 122356678887 777777777 49999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 173 GGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 173 gGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|+|||++|||++. + ..||++++|++|+++.
T Consensus 159 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 159 GGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKEGSVCE 236 (271)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975558999999999873 4 4599999999999999
Q ss_pred ecChhhHH
Q 007383 253 HGTLASLE 260 (605)
Q Consensus 253 ~g~~~~~~ 260 (605)
.|+++++.
T Consensus 237 ~g~~~~l~ 244 (271)
T 2ixe_A 237 QGTHLQLM 244 (271)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.6e-47 Score=389.12 Aligned_cols=226 Identities=23% Similarity=0.325 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEC
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART--SPTNGTILLN 100 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~--~~~~G~I~~~ 100 (605)
+|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++
T Consensus 20 ~l~~~~l~~~y-----------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 20 MLSIKDLHVSV-----------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp CEEEEEEEEEE-----------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred eEEEEeEEEEE-----------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 69999999999 3467999999999999999999999999999999999994 6899999999
Q ss_pred CeeCCc---ccc-cCceEEEcCCCCCCCCCCHHHHHHHHHh-c---CC---CChhHHHHHHHHHHHHcCCc-cccccccc
Q 007383 101 SSPIKP---SSF-RKLSAYVPQHDACIPSLTVYETFLFSAR-L---LV---PKTSQIDTIITVLLTELRLA-HLASTRLA 168 (605)
Q Consensus 101 g~~~~~---~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~---~~---~~~~~~~~~v~~~l~~l~L~-~~~~~~~~ 168 (605)
|+++.. ... ++.++||+|++.+++.+||.||+.+... . .. .+.++.+++++++++.+||. +..++.+
T Consensus 83 g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~- 161 (267)
T 2zu0_C 83 GKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV- 161 (267)
T ss_dssp TEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT-
T ss_pred CEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-
Confidence 998742 122 3459999999999999999999987542 1 11 12334567889999999996 4666664
Q ss_pred C-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc-CCeEEEEe
Q 007383 169 H-NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST-IDRILLLS 246 (605)
Q Consensus 169 ~-~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~d~v~~l~ 246 (605)
. +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++. +..+ +|++++|+
T Consensus 162 ~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~-~~~~~~d~v~~l~ 239 (267)
T 2zu0_C 162 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDYVHVLY 239 (267)
T ss_dssp TTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGG-GGTSCCSEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHH-HHhhcCCEEEEEE
Confidence 6 5999999999999999999999999999999999999999999999965 48999999999974 6665 89999999
Q ss_pred CCeEEEecChhhHHHHHHhCCCC
Q 007383 247 KGSVVHHGTLASLETFLLSSGFS 269 (605)
Q Consensus 247 ~G~iv~~g~~~~~~~~~~~~g~~ 269 (605)
+|++++.|+++++.. +...+|.
T Consensus 240 ~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 240 QGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp TTEEEEEECTTHHHH-HHTTTCT
T ss_pred CCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999987643 4444443
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.7e-47 Score=396.64 Aligned_cols=212 Identities=29% Similarity=0.456 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.|+++||+++|+ +.+.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 52 ~~i~~~~vs~~y~----------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G 115 (306)
T 3nh6_A 52 GRIEFENVHFSYA----------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG 115 (306)
T ss_dssp CCEEEEEEEEESS----------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CeEEEEEEEEEcC----------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECC
Confidence 3599999999993 246799999999999999999999999999999999999999999999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-----------ccccc
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-----------ASTRL 167 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~~ 167 (605)
+++.. ..+|+.+|||+|++.+|+ .||+||+.++.... . .++++++++..++.+. .+..
T Consensus 116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 187 (306)
T 3nh6_A 116 QDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA--G----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGER- 187 (306)
T ss_dssp EETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC--C----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTT-
T ss_pred EEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccC--C----HHHHHHHHHHhCcHHHHHhccchhhhHhcCC-
Confidence 99853 356788999999999885 59999999864221 1 2334455555555432 2233
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|+++. +.. ||+|++|++
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~-~~~-aD~i~vl~~ 263 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLST-VVN-ADQILVIKD 263 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHH-HHT-CSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHH-HHc-CCEEEEEEC
Confidence 478999999999999999999999999999999999999999999999863 6899999999974 554 999999999
Q ss_pred CeEEEecChhhHHH
Q 007383 248 GSVVHHGTLASLET 261 (605)
Q Consensus 248 G~iv~~g~~~~~~~ 261 (605)
|++++.|+++++.+
T Consensus 264 G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 264 GCIVERGRHEALLS 277 (306)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998754
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.5e-47 Score=383.98 Aligned_cols=207 Identities=25% Similarity=0.362 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ |+|.++|+
T Consensus 4 ~l~~~~l~~~---------------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~ 61 (249)
T 2qi9_C 4 VMQLQDVAES---------------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQ 61 (249)
T ss_dssp EEEEEEEEET---------------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTE
T ss_pred EEEEEceEEE---------------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCE
Confidence 5899999872 4899999999999999999999999999999999999999 99999999
Q ss_pred eCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 103 PIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
++.. ..+++.+|||+|++.+++.+||+||+.++.. ... . +++++++++.+|+.+..++. +.+|||||||||
T Consensus 62 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~---~-~~~~~~~l~~~~l~~~~~~~-~~~LSgGq~qrv 135 (249)
T 2qi9_C 62 PLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-DKT---R-TELLNDVAGALALDDKLGRS-TNQLSGGEWQRV 135 (249)
T ss_dssp EGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS-STT---C-HHHHHHHHHHTTCGGGTTSB-GGGCCHHHHHHH
T ss_pred ECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc-cCC---c-HHHHHHHHHHcCChhHhcCC-hhhCCHHHHHHH
Confidence 8742 3456779999999999999999999987631 111 1 56788999999999888877 499999999999
Q ss_pred HHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 180 SIGLSLLHDPA-------VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 180 ~ia~aL~~~P~-------illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
+|||||+.+|+ +|||||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.+++|++++|++|++++
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999 99999999999999999999999999765 899999999987 4778999999999999999
Q ss_pred ecChhhH
Q 007383 253 HGTLASL 259 (605)
Q Consensus 253 ~g~~~~~ 259 (605)
.|+++++
T Consensus 214 ~g~~~~~ 220 (249)
T 2qi9_C 214 SGRREEV 220 (249)
T ss_dssp EEEHHHH
T ss_pred eCCHHHH
Confidence 9998876
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=6.8e-47 Score=381.77 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..++++||+++|+ .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 6 ~~~~~~~l~~~y~---------------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g 70 (247)
T 2ff7_A 6 HDITFRNIRFRYK---------------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70 (247)
T ss_dssp EEEEEEEEEEESS---------------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CceeEEEEEEEeC---------------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 4689999999982 0235799999999999999999999999999999999999999999999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccccc----------cc
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR----------LA 168 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~----------~~ 168 (605)
+++.. ..+++.+|||+|++.+++ .||+||+.++.. . ..+++++++++.+++.+..++. .+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~ 143 (247)
T 2ff7_A 71 HDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP---G---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143 (247)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT---T---CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTT
T ss_pred EEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC---C---CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCC
Confidence 98752 335677999999998886 599999987521 1 1134566777777776544322 14
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |+|||++||+++. + +.||++++|++|
T Consensus 144 ~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~-~-~~~d~v~~l~~G 219 (247)
T 2ff7_A 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLST-V-KNADRIIVMEKG 219 (247)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGG-G-TTSSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHH-H-HhCCEEEEEECC
Confidence 7999999999999999999999999999999999999999999999994 4 7999999999974 4 569999999999
Q ss_pred eEEEecChhhHH
Q 007383 249 SVVHHGTLASLE 260 (605)
Q Consensus 249 ~iv~~g~~~~~~ 260 (605)
++++.|+++++.
T Consensus 220 ~i~~~g~~~~l~ 231 (247)
T 2ff7_A 220 KIVEQGKHKELL 231 (247)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 999999988763
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-47 Score=375.77 Aligned_cols=203 Identities=22% Similarity=0.326 Sum_probs=178.0
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
+..|+++||+++| +. .+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++
T Consensus 8 ~~~l~~~~ls~~y-----------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 69 (214)
T 1sgw_A 8 GSKLEIRDLSVGY-----------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 69 (214)
T ss_dssp -CEEEEEEEEEES-----------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CceEEEEEEEEEe-----------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 4579999999988 34 79999999999999999999999999999999999999999999999
Q ss_pred CeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 101 SSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
|+++. ..++.++||+|++.+++.+||+||+.++....+. ..+ +++++++++.+|+.+. +++ +.+|||||||||+
T Consensus 70 g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~-~~~LSgGqkqrv~ 143 (214)
T 1sgw_A 70 GVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKK-LGELSQGTIRRVQ 143 (214)
T ss_dssp TEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSB-GGGSCHHHHHHHH
T ss_pred CEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCC-hhhCCHHHHHHHH
Confidence 99875 4577899999999999999999999987654321 122 5678899999999887 666 5999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++..++|+++++ +|+|
T Consensus 144 laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 144 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 999999999999999999999999999999999999765 789999999998 478888888755 3544
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-47 Score=381.48 Aligned_cols=212 Identities=29% Similarity=0.472 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|+ +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+
T Consensus 1 ml~~~~l~~~y~----------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 64 (243)
T 1mv5_A 1 MLSARHVDFAYD----------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64 (243)
T ss_dssp CEEEEEEEECSS----------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTE
T ss_pred CEEEEEEEEEeC----------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 378999999882 2356999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccccc----------ccC
Q 007383 103 PIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR----------LAH 169 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~----------~~~ 169 (605)
++.. ..+++.+|||+|++.+++ .||+||+.++... . ..+++++++++.+++.+..++. .+.
T Consensus 65 ~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~ 138 (243)
T 1mv5_A 65 PIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG--D---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGV 138 (243)
T ss_dssp ESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS--C---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSB
T ss_pred EhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC--C---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcC
Confidence 8742 346778999999998887 5999999875221 1 1134577888888887655432 147
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++ + |+|||++||+++ .+ +.+|++++|++|+
T Consensus 139 ~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~-~~-~~~d~v~~l~~G~ 214 (243)
T 1mv5_A 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLS-TI-VDADKIYFIEKGQ 214 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHH-HH-HHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChH-HH-HhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999996 4 899999999986 34 5699999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
++..|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (243)
T 1mv5_A 215 ITGSGKHNELV 225 (243)
T ss_dssp ECCCSCHHHHH
T ss_pred EEEeCCHHHHH
Confidence 99999998774
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.6e-46 Score=379.46 Aligned_cols=211 Identities=20% Similarity=0.289 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|.. ....+.+|+|+|++++ ||+++|+||||||||||||+|+|++ |++|+|.++|+
T Consensus 1 ml~~~~l~~~y~~-------------~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~ 65 (263)
T 2pjz_A 1 MIQLKNVGITLSG-------------KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGM 65 (263)
T ss_dssp CEEEEEEEEEEEE-------------ETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTE
T ss_pred CEEEEEEEEEeCC-------------CCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCE
Confidence 4789999999941 0012579999999999 9999999999999999999999999 99999999999
Q ss_pred eCCcccccCceE-EEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHHHHH
Q 007383 103 PIKPSSFRKLSA-YVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerqRv~ 180 (605)
++.....++.++ ||+|++.+ .+||+||+.+...... ..+++++++++.+|+. +..+++ +.+|||||||||+
T Consensus 66 ~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~----~~~~~~~~~l~~~gl~~~~~~~~-~~~LSgGqkqRv~ 138 (263)
T 2pjz_A 66 EVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG----LDRDLFLEMLKALKLGEEILRRK-LYKLSAGQSVLVR 138 (263)
T ss_dssp EGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC----CCHHHHHHHHHHTTCCGGGGGSB-GGGSCHHHHHHHH
T ss_pred ECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc----hHHHHHHHHHHHcCCChhHhcCC-hhhCCHHHHHHHH
Confidence 874212256799 99999887 7899999998764331 2245688999999998 878777 4999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCC-eEEEEeCCeEEEecChhhH
Q 007383 181 IGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTID-RILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 181 ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d-~v~~l~~G~iv~~g~~~~~ 259 (605)
|||||+.+|++|||||||+|||+.++..+.+.|++++ . |||++|||++ ++.++|| ++++|++|++++.|+++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999884 2 9999999997 4778999 9999999999999998876
Q ss_pred H
Q 007383 260 E 260 (605)
Q Consensus 260 ~ 260 (605)
.
T Consensus 214 ~ 214 (263)
T 2pjz_A 214 L 214 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.7e-45 Score=374.23 Aligned_cols=212 Identities=27% Similarity=0.440 Sum_probs=178.7
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||+++|.. ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++| +|+|.++|
T Consensus 16 ~~l~i~~l~~~y~~--------------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g 80 (260)
T 2ghi_A 16 VNIEFSDVNFSYPK--------------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGG 80 (260)
T ss_dssp CCEEEEEEEECCTT--------------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETT
T ss_pred CeEEEEEEEEEeCC--------------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECC
Confidence 35999999998831 1124699999999999999999999999999999999999987 89999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-----------cccc
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-----------STRL 167 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~ 167 (605)
+++.. ..+++.++||+|++.+++ .||+||+.++.. ... ++++.++++.+++.+.. ++.
T Consensus 81 ~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 81 KNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp EEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred EEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 98742 345678999999998886 599999987521 111 23456677777765432 223
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++ + ++|||++|||++. + +.||++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~-~-~~~d~i~~l~~ 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLST-I-SSAESIILLNK 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGG-S-TTCSEEEEEET
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH-H-HhCCEEEEEEC
Confidence 47999999999999999999999999999999999999999999999995 3 7899999999974 4 56999999999
Q ss_pred CeEEEecChhhHH
Q 007383 248 GSVVHHGTLASLE 260 (605)
Q Consensus 248 G~iv~~g~~~~~~ 260 (605)
|+++..|+++++.
T Consensus 229 G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 229 GKIVEKGTHKDLL 241 (260)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 9999999998874
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.7e-44 Score=360.29 Aligned_cols=201 Identities=24% Similarity=0.406 Sum_probs=167.8
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
.+|+++||+++|. .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~---------------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 5 TEVVMENVTAFWE---------------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp EEEEEEEEEECSS---------------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred ceEEEEEEEEEeC---------------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence 3699999999883 1245799999999999999999999999999999999999999999999998
Q ss_pred eeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccc-----------ccccCC
Q 007383 102 SPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAS-----------TRLAHN 170 (605)
Q Consensus 102 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~~ 170 (605)
.++|++|++.+++. ||+||+.++... .. .+.++.++.+++.+..+ +. +.+
T Consensus 70 ----------~i~~v~q~~~~~~~-tv~enl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 ----------RISFCSQFSWIMPG-TIKENIIFGVSY---DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp ----------CEEEECSSCCCCSB-CHHHHHHTTSCC---CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred ----------EEEEEecCCcccCC-CHHHHhhccCCc---Ch----HHHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 38999999998885 999999875321 11 12334445555543221 12 379
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT-LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+. +++++ + |+|||++|||++. + +.||++++|++|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~-~-~~~d~v~~l~~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEH-L-KKADKILILHEGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHH-H-HHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCChHH-H-HhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999997 46664 3 7899999999863 4 4599999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
+++.|+++++.
T Consensus 207 i~~~g~~~~~~ 217 (229)
T 2pze_A 207 SYFYGTFSELQ 217 (229)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999988764
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-45 Score=390.62 Aligned_cols=210 Identities=25% Similarity=0.305 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|+++||+++|.. +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++ ++|+|.++|
T Consensus 18 ~~i~~~~l~~~y~~---------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G 81 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---------------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDG 81 (390)
T ss_dssp CCEEEEEEEEESSS---------------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESS
T ss_pred CeEEEEEEEEEecC---------------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECC
Confidence 45999999999931 34679999999999999999999999999999999999998 899999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCC--------
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN-------- 170 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~-------- 170 (605)
+++.. ..+++.+|||+|++.+++ +||+||+.+.. . ..+++++++++.++|.+..++.+ .+
T Consensus 82 ~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~----~---~~~~~v~~~l~~~~L~~~~~~~p-~~l~~~i~~~ 152 (390)
T 3gd7_A 82 VSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA----A---HSDQEIWKVADEVGLRSVIEQFP-GKLDFVLVDG 152 (390)
T ss_dssp CBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC----C---SCHHHHHHHHHHTTCHHHHTTST-TGGGCEECTT
T ss_pred EECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc----c---cCHHHHHHHHHHhCCHHHHhhcc-cccccccccc
Confidence 98753 345678999999999987 69999996321 1 12456788999999998887764 66
Q ss_pred ---CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 171 ---LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 171 ---LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++. .++|+|++|||.+ ....+|||++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e--~~~~aDri~vl~~ 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIE--AMLECDQFLVIEE 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999874 3789999999975 4567999999999
Q ss_pred CeEEEecChhhHH
Q 007383 248 GSVVHHGTLASLE 260 (605)
Q Consensus 248 G~iv~~g~~~~~~ 260 (605)
|+++..|+++++.
T Consensus 229 G~i~~~g~~~el~ 241 (390)
T 3gd7_A 229 NKVRQYDSILELY 241 (390)
T ss_dssp TEEEEESSHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 9999999999874
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=360.08 Aligned_cols=203 Identities=25% Similarity=0.445 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
+|+++||+++|.. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~---------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g- 66 (237)
T 2cbz_A 3 SITVRNATFTWAR---------------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG- 66 (237)
T ss_dssp CEEEEEEEEESCT---------------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-
T ss_pred eEEEEEEEEEeCC---------------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-
Confidence 4899999999831 135799999999999999999999999999999999999999999999998
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHH---HHHHcCCcc-----cccccccCCCCHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITV---LLTELRLAH-----LASTRLAHNLSGG 174 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~---~l~~l~L~~-----~~~~~~~~~LSgG 174 (605)
.+|||+|++.+ +.+||+||+.++... .. +..+++.+ +.+.+++.+ ..+++ +.+||||
T Consensus 67 ---------~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LSgG 131 (237)
T 2cbz_A 67 ---------SVAYVPQQAWI-QNDSLRENILFGCQL---EE-PYYRSVIQACALLPDLEILPSGDRTEIGEK-GVNLSGG 131 (237)
T ss_dssp ---------CEEEECSSCCC-CSEEHHHHHHTTSCC---CT-THHHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCCCHH
T ss_pred ---------EEEEEcCCCcC-CCcCHHHHhhCcccc---CH-HHHHHHHHHHhhHHHHHhccccccccccCC-CCCCCHH
Confidence 38999999865 578999999876422 11 11111211 122333321 13444 5899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLK---SISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV 251 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~---~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv 251 (605)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+ +++ .|+|||++|||++. + +.||++++|++|+++
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSY-L-PQVDVIIVMSGGKIS 207 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTT-G-GGSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHH-H-HhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999995 443 37899999999984 4 579999999999999
Q ss_pred EecChhhHH
Q 007383 252 HHGTLASLE 260 (605)
Q Consensus 252 ~~g~~~~~~ 260 (605)
..|+++++.
T Consensus 208 ~~g~~~~~~ 216 (237)
T 2cbz_A 208 EMGSYQELL 216 (237)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.9e-44 Score=402.78 Aligned_cols=214 Identities=29% Similarity=0.450 Sum_probs=181.0
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.++++|++++|+. +.+.+|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.+||
T Consensus 338 ~~i~~~~v~~~y~~---------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 402 (578)
T 4a82_A 338 GRIDIDHVSFQYND---------------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402 (578)
T ss_dssp CCEEEEEEEECSCS---------------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred CeEEEEEEEEEcCC---------------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 45999999999841 245699999999999999999999999999999999999999999999999
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---c
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---A 168 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~ 168 (605)
+++. ...+|+.+|||+|++.+++. ||+||+.++.. . ..++++.+.++..++.+.. ++.+ +
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~---~---~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g 475 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP---T---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS---S---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred EEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC---C---CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC
Confidence 9874 34567889999999999876 99999987631 1 1123455566666654322 2221 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
.+||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|+++|+++. + +.||++++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLST-I-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGG-T-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEEEECC
Confidence 6899999999999999999999999999999999999999999999985 36899999999984 4 569999999999
Q ss_pred eEEEecChhhHHH
Q 007383 249 SVVHHGTLASLET 261 (605)
Q Consensus 249 ~iv~~g~~~~~~~ 261 (605)
++++.|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998753
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-43 Score=401.42 Aligned_cols=215 Identities=28% Similarity=0.422 Sum_probs=182.3
Q ss_pred EEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 24 LTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 24 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
++++||+++|+. ..++.+|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.+||++
T Consensus 342 i~~~~v~~~y~~--------------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 407 (595)
T 2yl4_A 342 LEFKNVHFAYPA--------------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 407 (595)
T ss_dssp EEEEEEEEECSS--------------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEEEEEEeCC--------------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEE
Confidence 999999999941 113579999999999999999999999999999999999999999999999999
Q ss_pred CCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-------cccc---cCC
Q 007383 104 IKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-------STRL---AHN 170 (605)
Q Consensus 104 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~---~~~ 170 (605)
+.. ..+|+.+|||+|++.+++ .||+||+.++.... .+..+++++++++.+++.+.. ++.+ +.+
T Consensus 408 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 408 IRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp TTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred hhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 753 346778999999999887 49999999864211 012245677888888876432 3322 378
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
||||||||++|||||+++|++|+|||||+|||+.+++.+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|++
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~-~-~~~d~i~~l~~G~i 559 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLST-I-KNANMVAVLDQGKI 559 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHH-H-HHSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHH-H-HcCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999964 6899999999873 4 56999999999999
Q ss_pred EEecChhhHH
Q 007383 251 VHHGTLASLE 260 (605)
Q Consensus 251 v~~g~~~~~~ 260 (605)
++.|+++++.
T Consensus 560 ~~~g~~~~l~ 569 (595)
T 2yl4_A 560 TEYGKHEELL 569 (595)
T ss_dssp EEEECSCC--
T ss_pred EEECCHHHHH
Confidence 9999998874
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.5e-44 Score=402.79 Aligned_cols=213 Identities=23% Similarity=0.373 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.++++|++++|+. +.+.+|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.+||
T Consensus 340 ~~i~~~~v~~~y~~---------------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 340 GSVSFENVEFRYFE---------------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCEEEEEEEECSSS---------------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CcEEEEEEEEEcCC---------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 35999999999841 345799999999999999999999999999999999999999999999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCC-----------cccccccc
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRL-----------AHLASTRL 167 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L-----------~~~~~~~~ 167 (605)
+++.. ..+|+.++||+|++.+++. ||+||+.++... .++ +++.+.++..++ +...++.
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~- 476 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED--ATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERG- 476 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS--CCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSS-
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC--CCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCC-
Confidence 98743 4567889999999999875 999999875321 111 223333343333 3333344
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 168 AHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+.+||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++. +|+|+|+++|+++. ...||++++|++
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~--~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPT--ALLADKILVLHE 552 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHH--HTTSSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHH--HHhCCEEEEEEC
Confidence 47999999999999999999999999999999999999999999999984 37999999999973 468999999999
Q ss_pred CeEEEecChhhHHH
Q 007383 248 GSVVHHGTLASLET 261 (605)
Q Consensus 248 G~iv~~g~~~~~~~ 261 (605)
|++++.|+++|+.+
T Consensus 553 G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAGFGTHKELLE 566 (587)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998854
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2e-43 Score=398.22 Aligned_cols=214 Identities=26% Similarity=0.405 Sum_probs=183.5
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.++++||+++|+. +++.+|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.+||
T Consensus 340 ~~i~~~~v~~~y~~---------------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG---------------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred CeEEEEEEEEEcCC---------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 35999999999931 125699999999999999999999999999999999999999999999999
Q ss_pred eeCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccccc-------c---c
Q 007383 102 SPIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR-------L---A 168 (605)
Q Consensus 102 ~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~---~ 168 (605)
+++. ...+|+.+|||+|++.+++. ||+||+.++.. +. ..+++++++++.+++.+..++. + +
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~ 478 (582)
T 3b5x_A 405 HDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE--GE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENG 478 (582)
T ss_pred EEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC--CC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCC
Confidence 9874 34567889999999999875 99999998631 11 1234567778888776543322 1 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
.+||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. + |+|+|+++|+++. + +.||++++|++|
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~-~-~~~d~i~~l~~G 554 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLST-I-EQADEILVVDEG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH-H-HhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999999985 3 7899999999873 4 579999999999
Q ss_pred eEEEecChhhHH
Q 007383 249 SVVHHGTLASLE 260 (605)
Q Consensus 249 ~iv~~g~~~~~~ 260 (605)
++++.|+++++.
T Consensus 555 ~i~~~g~~~~l~ 566 (582)
T 3b5x_A 555 EIIERGRHADLL 566 (582)
T ss_pred EEEEECCHHHHH
Confidence 999999998874
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.6e-43 Score=398.97 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 22 YKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 22 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
-.++++||+++|+. +++.+|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.+||
T Consensus 340 ~~i~~~~v~~~y~~---------------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 340 GDLEFRNVTFTYPG---------------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp CCEEEEEEEECSSS---------------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred CcEEEEEEEEEcCC---------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 35999999999831 125699999999999999999999999999999999999999999999999
Q ss_pred eeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccccc-------c---c
Q 007383 102 SPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR-------L---A 168 (605)
Q Consensus 102 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~---~ 168 (605)
+++.. ..+|+.+|||+|++.+++. ||+||+.++.. +. ..+++++++++.+++.+..++. + +
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~ 478 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART--EE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT--SC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred EEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC--CC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCC
Confidence 99753 3567789999999999875 99999998631 11 1134567777777776543221 1 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
.+||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~-~-~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLST-I-EQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGG-T-TTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHH-H-HhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999963 7899999999974 4 579999999999
Q ss_pred eEEEecChhhHHH
Q 007383 249 SVVHHGTLASLET 261 (605)
Q Consensus 249 ~iv~~g~~~~~~~ 261 (605)
++++.|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999998753
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.4e-44 Score=402.25 Aligned_cols=212 Identities=25% Similarity=0.384 Sum_probs=179.2
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|+ +.+.+|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.+||+
T Consensus 354 ~i~~~~v~~~y~----------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 417 (598)
T 3qf4_B 354 EIEFKNVWFSYD----------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI 417 (598)
T ss_dssp CEEEEEEECCSS----------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE
T ss_pred eEEEEEEEEECC----------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE
Confidence 599999999883 2356999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccccc-------c---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTR-------L---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~---~~ 169 (605)
++. ...+|+.+|||+|++.+++ .||+||+.++..- .++ +++.+.++..++.+..+.. + +.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~ 490 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNPG--ATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGE 490 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSSTT--CCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHT
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCC
Confidence 874 3456788999999999886 5999999875211 111 2344555555554332221 1 36
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||+|++|++|+
T Consensus 491 ~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d~i~~l~~G~ 566 (598)
T 3qf4_B 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNT-I-KNADLIIVLRDGE 566 (598)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTH-H-HHCSEEEEECSSS
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEEEECCE
Confidence 899999999999999999999999999999999999999999999985 37999999999984 5 4599999999999
Q ss_pred EEEecChhhHHH
Q 007383 250 VVHHGTLASLET 261 (605)
Q Consensus 250 iv~~g~~~~~~~ 261 (605)
+++.|+++++.+
T Consensus 567 i~~~g~~~~l~~ 578 (598)
T 3qf4_B 567 IVEMGKHDELIQ 578 (598)
T ss_dssp EEECSCHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998753
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.9e-42 Score=352.56 Aligned_cols=195 Identities=26% Similarity=0.420 Sum_probs=154.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||++.. +.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|
T Consensus 40 ~l~~~~l~~~~-------------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG-------------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG- 99 (290)
T ss_dssp ----------C-------------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-
T ss_pred eEEEEEEEEcC-------------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-
Confidence 58999998732 3599999999999999999999999999999999999999999999998
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccc-----------ccccCCC
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAS-----------TRLAHNL 171 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~~L 171 (605)
.++||+|++.+++. ||+||+. +.. . .. ..+++.++.+++.+..+ .. +.+|
T Consensus 100 ---------~i~~v~Q~~~l~~~-tv~enl~-~~~-~--~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~L 160 (290)
T 2bbs_A 100 ---------RISFCSQNSWIMPG-TIKENII-GVS-Y--DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GITL 160 (290)
T ss_dssp ---------CEEEECSSCCCCSS-BHHHHHH-TTC-C--CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCC
T ss_pred ---------EEEEEeCCCccCcc-cHHHHhh-Ccc-c--ch----HHHHHHHHHhChHHHHHhccccccchhcCc-cCcC
Confidence 38999999988875 9999998 321 1 11 12334555556543221 12 3799
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTL-KSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.+ ++++ .|+|||++||+++. + +.||++++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~-~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH-H-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHH-H-HcCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999974 5664 37899999999863 4 56999999999999
Q ss_pred EEecChhhHH
Q 007383 251 VHHGTLASLE 260 (605)
Q Consensus 251 v~~g~~~~~~ 260 (605)
+..|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.7e-42 Score=416.41 Aligned_cols=216 Identities=30% Similarity=0.468 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|+. +++.++|+|+|++|+|||.+||+||||||||||+++|.|+++|++|+|.+||.
T Consensus 1076 ~I~f~nVsf~Y~~--------------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPE--------------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS 1141 (1321)
T ss_dssp CEEEEEEEECCTT--------------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTE
T ss_pred eEEEEEEEEeCCC--------------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCE
Confidence 5999999999952 23457999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. .+.+|++++|||||+.+|+. |++|||.|+..- .+..++.+.++++..++.+. .|+.+ ..
T Consensus 1142 di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~ 1216 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGT 1216 (1321)
T ss_dssp ETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC
T ss_pred EhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCC----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCc
Confidence 985 35789999999999999975 999999876321 11234556777777776432 34544 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|+++. +|+|+|+++|.++. ...||+|++|++|+
T Consensus 1217 ~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsT--i~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1217 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNT--VMNADCIAVVSNGT 1292 (1321)
T ss_dssp SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSST--TTTCSEEEEESSSS
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHH--HHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999875 47999999999984 57799999999999
Q ss_pred EEEecChhhHHH
Q 007383 250 VVHHGTLASLET 261 (605)
Q Consensus 250 iv~~g~~~~~~~ 261 (605)
|+++|+++++.+
T Consensus 1293 IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1293 IIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999999864
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.5e-41 Score=409.15 Aligned_cols=213 Identities=28% Similarity=0.390 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++|++++|+. ..++++|+|+|+++++||.+||+||||||||||+++|.|+++|++|+|.+||.
T Consensus 415 ~I~~~nvsF~Y~~--------------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 415 DITVENVHFTYPS--------------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp CEEEEEEEECCSS--------------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred cEEEEEeeeeCCC--------------CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 5999999999952 23567999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++. .+.+|+.+|||+|++.+++. |++||+.|+..- ..++++.++++..++.+. .++.+ ..
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~------~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~ 553 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEG------ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGT 553 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTT------CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSC
T ss_pred cchhccHHHHhhcccccCCcceeeCC-chhHHHhhhccc------chHHHHHHHHHHccchhHHHcCCCCCccEecCCCC
Confidence 975 35678899999999999875 999999987321 123456667776665432 33443 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++||||++++|+||+||||||+||+.+.+.+.+.|+++.+ |+|+|+++|+++. .+.+|+|++|++|+
T Consensus 554 ~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~--i~~aD~Iivl~~G~ 629 (1321)
T 4f4c_A 554 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLST--IRNADLIISCKNGQ 629 (1321)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTT--TTTCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHH--HHhCCEEEEeeCCe
Confidence 7999999999999999999999999999999999999999999999863 7899999999984 68899999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
|++.|+.+|+.
T Consensus 630 ive~Gth~eL~ 640 (1321)
T 4f4c_A 630 VVEVGDHRALM 640 (1321)
T ss_dssp EEEEECHHHHH
T ss_pred eeccCCHHHHH
Confidence 99999999874
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.9e-40 Score=400.03 Aligned_cols=213 Identities=27% Similarity=0.392 Sum_probs=178.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++|+. ...+++|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.++|+
T Consensus 387 ~i~~~~v~~~y~~--------------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~ 452 (1284)
T 3g5u_A 387 NLEFKNIHFSYPS--------------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452 (1284)
T ss_dssp CEEEEEEEECCSS--------------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTE
T ss_pred eEEEEEEEEEcCC--------------CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 5999999999942 12357999999999999999999999999999999999999999999999999
Q ss_pred eCC---cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-------cccccc---cC
Q 007383 103 PIK---PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-------LASTRL---AH 169 (605)
Q Consensus 103 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~~---~~ 169 (605)
++. ...+|+.+|||+|++.+++. ||+||+.++... .+. +.+.+.++..++.+ ..++.+ +.
T Consensus 453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 525 (1284)
T 3g5u_A 453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED--VTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525 (1284)
T ss_dssp EGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS--CCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSC
T ss_pred EHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHHhccccccccccCCCC
Confidence 874 34577889999999999876 999999987421 122 22333333333322 122322 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+||||||||++|||||+++|+||+||||||+||+.+...+.+.++++. .|+|+|+++|+++. + ..+|+|++|++|+
T Consensus 526 ~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-i-~~~d~i~vl~~G~ 601 (1284)
T 3g5u_A 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLST-V-RNADVIAGFDGGV 601 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHH-H-TTCSEEEECSSSC
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEEEECCE
Confidence 899999999999999999999999999999999999999999999875 37999999999973 5 5599999999999
Q ss_pred EEEecChhhHH
Q 007383 250 VVHHGTLASLE 260 (605)
Q Consensus 250 iv~~g~~~~~~ 260 (605)
+++.|+++++.
T Consensus 602 i~~~g~~~~l~ 612 (1284)
T 3g5u_A 602 IVEQGNHDELM 612 (1284)
T ss_dssp CCCEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999999875
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.7e-39 Score=394.50 Aligned_cols=216 Identities=30% Similarity=0.441 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++++||+++|+. ...+.+|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.+||+
T Consensus 1030 ~i~~~~v~~~y~~--------------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPT--------------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095 (1284)
T ss_dssp CEEEEEEEBCCSC--------------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSS
T ss_pred cEEEEEEEEECCC--------------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 5999999999942 12346999999999999999999999999999999999999999999999999
Q ss_pred eCCc---ccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-------ccccc---cC
Q 007383 103 PIKP---SSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-------ASTRL---AH 169 (605)
Q Consensus 103 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~---~~ 169 (605)
++.. ..+|+.++||||++.+++ .||+||+.++......+. +.+.+.++..++.+. .|+.+ +.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSC
T ss_pred EcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCCCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCC
Confidence 8753 457888999999998875 699999987632211122 234444555554332 23333 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 170 NLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+|||||||||+|||||+++|+||+|||||+|||+.+...+.+.|++.. +|+|||+++|+++. + +.||||++|++|+
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~-i-~~~dri~vl~~G~ 1246 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLST-I-QNADLIVVIQNGK 1246 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTG-G-GSCSEEEEEETBE
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHH-H-HcCCEEEEEECCE
Confidence 899999999999999999999999999999999999999999999863 48999999999984 5 5699999999999
Q ss_pred EEEecChhhHHH
Q 007383 250 VVHHGTLASLET 261 (605)
Q Consensus 250 iv~~g~~~~~~~ 261 (605)
+++.|+++++.+
T Consensus 1247 i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1247 VKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998753
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.4e-39 Score=360.22 Aligned_cols=208 Identities=25% Similarity=0.326 Sum_probs=181.4
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....++++|+++.|. . ..|+++|+++++||++||+||||||||||||+|+|+++|++|+|.+
T Consensus 354 ~~~~l~~~~l~~~~~-----------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 415 (607)
T 3bk7_A 354 RETLVEYPRLVKDYG-----------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 415 (607)
T ss_dssp CCEEEEECCEEEECS-----------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC
T ss_pred CceEEEEeceEEEec-----------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 456799999999872 2 3699999999999999999999999999999999999999999975
Q ss_pred CCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 100 NSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
.+.+||++|+....+.+||.|++...... .....++++++++.+|+.+..++.+ .+|||||||||
T Consensus 416 ----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSGGe~QRv 480 (607)
T 3bk7_A 416 ----------DLTVAYKPQYIKAEYEGTVYELLSKIDSS----KLNSNFYKTELLKPLGIIDLYDRNV-EDLSGGELQRV 480 (607)
T ss_dssp ----------CCCEEEECSSCCCCCSSBHHHHHHHHHHH----HHHCHHHHHHTHHHHTCTTTTTSBG-GGCCHHHHHHH
T ss_pred ----------eeEEEEEecCccCCCCCcHHHHHHhhhcc----CCCHHHHHHHHHHHcCCchHhcCCh-hhCCHHHHHHH
Confidence 24699999998777889999988764110 0012356788999999988888774 99999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC--CeEEEecChh
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK--GSVVHHGTLA 257 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~--G~iv~~g~~~ 257 (605)
+||++|+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++ .+..++||+++|++ |+++..|+++
T Consensus 481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~ 559 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPM 559 (607)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHH
Confidence 99999999999999999999999999999999999997666899999999998 48889999999986 8888899998
Q ss_pred hHHH
Q 007383 258 SLET 261 (605)
Q Consensus 258 ~~~~ 261 (605)
++..
T Consensus 560 ~~~~ 563 (607)
T 3bk7_A 560 GMRE 563 (607)
T ss_dssp EHHH
T ss_pred HHHh
Confidence 8754
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-38 Score=354.98 Aligned_cols=208 Identities=25% Similarity=0.329 Sum_probs=180.1
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....++++|+++.|. . ..|+++|+++++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 284 ~~~~l~~~~l~~~~~-----------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 345 (538)
T 1yqt_A 284 RETLVTYPRLVKDYG-----------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345 (538)
T ss_dssp CCEEEEECCEEEEET-----------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC
T ss_pred CCeEEEEeeEEEEEC-----------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 346799999999882 2 3699999999999999999999999999999999999999999975
Q ss_pred CCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 100 NSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
...+|||+|+....+.+||.|++...... ....+++++++++.+++.+..++.+ .+|||||||||
T Consensus 346 ----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSGGe~qrv 410 (538)
T 1yqt_A 346 ----------DLTVAYKPQYIKADYEGTVYELLSKIDAS----KLNSNFYKTELLKPLGIIDLYDREV-NELSGGELQRV 410 (538)
T ss_dssp ----------CCCEEEECSSCCCCCSSBHHHHHHHHHHH----HHTCHHHHHHTTTTTTCGGGTTSBG-GGCCHHHHHHH
T ss_pred ----------CceEEEEecCCcCCCCCcHHHHHHhhhcc----CCCHHHHHHHHHHHcCChhhhcCCh-hhCCHHHHHHH
Confidence 24599999998777889999988754111 0012356788999999988777774 99999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC--CeEEEecChh
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK--GSVVHHGTLA 257 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~--G~iv~~g~~~ 257 (605)
+||++|+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++ ++..+|||+++|++ |+++..|+++
T Consensus 411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~ 489 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPM 489 (538)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHH
Confidence 99999999999999999999999999999999999997555889999999998 58889999999986 8888999998
Q ss_pred hHHH
Q 007383 258 SLET 261 (605)
Q Consensus 258 ~~~~ 261 (605)
++..
T Consensus 490 ~~~~ 493 (538)
T 1yqt_A 490 GMRE 493 (538)
T ss_dssp EHHH
T ss_pred HHHh
Confidence 8754
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.8e-38 Score=349.64 Aligned_cols=208 Identities=22% Similarity=0.282 Sum_probs=178.8
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....++++|+++.+. . ..|+++|+++++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 266 ~~~~l~~~~l~~~~~-----------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 327 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLG-----------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTP 327 (538)
T ss_dssp CCEEEEECCEEEEET-----------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEES
T ss_pred ccceEEEcceEEEEC-----------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 345799999999882 2 4688889999999999999999999999999999999999999987
Q ss_pred CCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH
Q 007383 100 NSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV 179 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv 179 (605)
+| +.++|++|+......+||.||+.+....... ...+.++++++.+++.+..++.+ .+|||||||||
T Consensus 328 ~~---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~-~~LSGGq~QRv 394 (538)
T 3ozx_A 328 EK---------QILSYKPQRIFPNYDGTVQQYLENASKDALS---TSSWFFEEVTKRLNLHRLLESNV-NDLSGGELQKL 394 (538)
T ss_dssp SC---------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTC---TTSHHHHHTTTTTTGGGCTTSBG-GGCCHHHHHHH
T ss_pred CC---------eeeEeechhcccccCCCHHHHHHHhhhhccc---hhHHHHHHHHHHcCCHHHhcCCh-hhCCHHHHHHH
Confidence 64 3579999987766788999999875322111 12345788899999998888874 99999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC--CeEEEecChh
Q 007383 180 SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK--GSVVHHGTLA 257 (605)
Q Consensus 180 ~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~--G~iv~~g~~~ 257 (605)
+|||+|+.+|++|||||||+|||+.++.++.++|++++++.|.|||++|||++ ++..+||||++|++ |.....+++.
T Consensus 395 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChH
Confidence 99999999999999999999999999999999999998777899999999998 58899999999986 6677777776
Q ss_pred hH
Q 007383 258 SL 259 (605)
Q Consensus 258 ~~ 259 (605)
++
T Consensus 474 ~~ 475 (538)
T 3ozx_A 474 TL 475 (538)
T ss_dssp EH
T ss_pred HH
Confidence 54
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-37 Score=345.12 Aligned_cols=193 Identities=24% Similarity=0.308 Sum_probs=166.1
Q ss_pred ceeeeeeeEEEeCC-----eEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCC
Q 007383 53 TYILKNVSLTAYPS-----QILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLT 127 (605)
Q Consensus 53 ~~iL~~vs~~i~~G-----e~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (605)
+.+++|+|+++++| |+++|+||||||||||+++|+|+++|++|+. +. +..++|++|+.......|
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~----~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP----KLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC----SCCEEEECSSCCCCCCSB
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc----CCcEEEecccccccCCcc
Confidence 45789999999999 7899999999999999999999999999962 11 345899999876666679
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 007383 128 VYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAF 207 (605)
Q Consensus 128 v~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~ 207 (605)
|+|++..... ... ...+.++++++.++|.+..++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++.
T Consensus 430 v~e~~~~~~~--~~~--~~~~~~~~~l~~l~l~~~~~~~~-~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 504 (608)
T 3j16_B 430 VRQLFFKKIR--GQF--LNPQFQTDVVKPLRIDDIIDQEV-QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI 504 (608)
T ss_dssp HHHHHHHHCS--STT--TSHHHHHHTHHHHTSTTTSSSBS-SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHH
T ss_pred HHHHHHHHhh--ccc--ccHHHHHHHHHHcCChhhhcCCh-hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence 9998754321 111 12345678999999998888874 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC--CeEEEecChhhHHH
Q 007383 208 NVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK--GSVVHHGTLASLET 261 (605)
Q Consensus 208 ~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~--G~iv~~g~~~~~~~ 261 (605)
.+.++|++++++.|.|||++|||++ ++..++||+++|++ |+++..|+++++..
T Consensus 505 ~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 505 ICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999997656899999999998 58899999999986 99999999998754
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.1e-36 Score=343.06 Aligned_cols=182 Identities=24% Similarity=0.349 Sum_probs=153.3
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE---------EECCeeCCc---c--cccCceEEEcCC
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI---------LLNSSPIKP---S--SFRKLSAYVPQH 119 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I---------~~~g~~~~~---~--~~~~~i~yv~Q~ 119 (605)
.+|+|+| ++++||+++|+||||||||||||+|+|+++|++|++ .++|.++.. . ..+..+++++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4899999 999999999999999999999999999999999996 456655421 0 123457899987
Q ss_pred CCCCC---CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 007383 120 DACIP---SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDE 196 (605)
Q Consensus 120 ~~l~~---~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDE 196 (605)
....+ ..||.|++... +.+++++++++.+||.+..++.+ ++|||||||||+||+||+.+|++|||||
T Consensus 185 ~~~~~~~~~~tv~e~l~~~---------~~~~~~~~~L~~lgL~~~~~~~~-~~LSGGekQRvaIAraL~~~P~lLlLDE 254 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKV---------DEVGKFEEVVKELELENVLDREL-HQLSGGELQRVAIAAALLRKAHFYFFDE 254 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHT---------CCSSCHHHHHHHTTCTTGGGSBG-GGCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred hhhchhhccccHHHHhhhh---------HHHHHHHHHHHHcCCCchhCCCh-hhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 43322 23999998631 11245778999999998888774 9999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 197 PTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 197 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
||+|||+.++..+.++|++++++ |.|||++|||++ .+..++|++++|+++
T Consensus 255 PTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~-~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 255 PSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLA-VLDYLSDVIHVVYGE 304 (607)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEESC
T ss_pred CcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChH-HHHhhCCEEEEECCC
Confidence 99999999999999999999864 899999999987 478899999999865
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-36 Score=337.56 Aligned_cols=196 Identities=22% Similarity=0.305 Sum_probs=160.0
Q ss_pred EEE-EeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE-----
Q 007383 24 LTG-SSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI----- 97 (605)
Q Consensus 24 l~~-~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I----- 97 (605)
.++ +||+++|. +...+|+|+| ++++||+++|+||||||||||+|+|+|+++|++|++
T Consensus 21 ~~~~~~ls~~yg----------------~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~ 83 (538)
T 1yqt_A 21 EQLEEDCVHRYG----------------VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83 (538)
T ss_dssp ---CCCEEEECS----------------TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHH
T ss_pred hhHhcCcEEEEC----------------CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchh
Confidence 455 58888882 1225899999 999999999999999999999999999999999995
Q ss_pred ----EECCeeCCc-----ccccCceEEEcCCCCCCCC---CCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccc
Q 007383 98 ----LLNSSPIKP-----SSFRKLSAYVPQHDACIPS---LTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLAST 165 (605)
Q Consensus 98 ----~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~ 165 (605)
.++|.++.. ...+..+++++|+....+. .|+.|++... +..++++++++.+|+.+..++
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------~~~~~~~~~l~~lgl~~~~~~ 154 (538)
T 1yqt_A 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------DETGKLEEVVKALELENVLER 154 (538)
T ss_dssp HHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---------CSSSCHHHHHHHTTCTTTTTS
T ss_pred hhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---------hHHHHHHHHHHHcCCChhhhC
Confidence 356654321 0112457899997543332 3899987532 112457789999999888887
Q ss_pred cccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 166 RLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 166 ~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
.+ .+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++ .+.++||++++|
T Consensus 155 ~~-~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 155 EI-QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp BG-GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred Ch-hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 74 99999999999999999999999999999999999999999999999986 4899999999987 588899999999
Q ss_pred eCC
Q 007383 246 SKG 248 (605)
Q Consensus 246 ~~G 248 (605)
++|
T Consensus 232 ~~~ 234 (538)
T 1yqt_A 232 YGE 234 (538)
T ss_dssp EEE
T ss_pred cCc
Confidence 864
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.7e-35 Score=340.10 Aligned_cols=201 Identities=20% Similarity=0.288 Sum_probs=169.5
Q ss_pred CcceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 20 KTYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 20 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
....|...|+++.| +.+.+|+|+||++++||+++|+||||||||||||+|+| |+|
T Consensus 432 ~~~~L~~~~ls~~y-----------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i-- 486 (986)
T 2iw3_A 432 EGEDLCNCEFSLAY-----------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV-- 486 (986)
T ss_dssp SSCEEEEEEEEEEE-----------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--
T ss_pred ccceeEEeeEEEEE-----------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--
Confidence 34467778999998 45679999999999999999999999999999999995 443
Q ss_pred CCeeCCcccccCceEEEcCCC-CCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCHHHHH
Q 007383 100 NSSPIKPSSFRKLSAYVPQHD-ACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSGGERR 177 (605)
Q Consensus 100 ~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSgGerq 177 (605)
+|.+.. .. ..++|++|+. .+++.+||.|++.+ ...+ . +++++++++.+|+. +..++.+ ++|||||||
T Consensus 487 ~g~~~~-~~--~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~-~~LSGGqkQ 555 (986)
T 2iw3_A 487 DGFPTQ-EE--CRTVYVEHDIDGTHSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPI-SALSGGWKM 555 (986)
T ss_dssp TTCCCT-TT--SCEEETTCCCCCCCTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBG-GGCCHHHHH
T ss_pred CCCccc-cc--eeEEEEcccccccccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCc-ccCCHHHHH
Confidence 454432 11 2378999984 67889999999975 2221 1 56788999999994 5667774 999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEE-EecCh
Q 007383 178 RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVV-HHGTL 256 (605)
Q Consensus 178 Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv-~~g~~ 256 (605)
||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|+|||++|||++ .+.+++|++++|++|+++ +.|++
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNF 630 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCH
Confidence 99999999999999999999999999999999999987 3789999999987 488899999999999997 78999
Q ss_pred hhHHH
Q 007383 257 ASLET 261 (605)
Q Consensus 257 ~~~~~ 261 (605)
+++.+
T Consensus 631 ~e~~~ 635 (986)
T 2iw3_A 631 TEFVK 635 (986)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.5e-35 Score=344.97 Aligned_cols=206 Identities=22% Similarity=0.309 Sum_probs=164.3
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
..+|+++|++++|+ ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++
T Consensus 669 ~~mL~v~nLs~~Y~---------------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 669 KAIVKVTNMEFQYP---------------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp SEEEEEEEEEECCT---------------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred CceEEEEeeEEEeC---------------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 45799999999883 113569999999999999999999999999999999999999999999998
Q ss_pred CeeCCcccccCceEEEcCCCCC----CCCCCHHHHHHHHHhc-C------------------------------------
Q 007383 101 SSPIKPSSFRKLSAYVPQHDAC----IPSLTVYETFLFSARL-L------------------------------------ 139 (605)
Q Consensus 101 g~~~~~~~~~~~i~yv~Q~~~l----~~~lTv~e~l~~~~~~-~------------------------------------ 139 (605)
|. ..++|++|++.. ....|+.|++.+.... .
T Consensus 734 ~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i 805 (986)
T 2iw3_A 734 EN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGI 805 (986)
T ss_dssp TT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEE
T ss_pred Cc--------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhh
Confidence 62 147888886421 1235777776543110 0
Q ss_pred ----------------------------------------------------------------CCChhHHHHHHHHHHH
Q 007383 140 ----------------------------------------------------------------VPKTSQIDTIITVLLT 155 (605)
Q Consensus 140 ----------------------------------------------------------------~~~~~~~~~~v~~~l~ 155 (605)
+..+...+++++++++
T Consensus 806 ~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le 885 (986)
T 2iw3_A 806 HSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCS 885 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred hhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHH
Confidence 0000011356788999
Q ss_pred HcCCccc--ccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCh
Q 007383 156 ELRLAHL--ASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSF 233 (605)
Q Consensus 156 ~l~L~~~--~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 233 (605)
.+||.+. .++. +++|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||++
T Consensus 886 ~lGL~~~~~~~~~-~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~e- 959 (986)
T 2iw3_A 886 MLGLDPEIVSHSR-IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAE- 959 (986)
T ss_dssp HTTCCHHHHHHSC-GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCHH-
T ss_pred HcCCCchhhcCCC-ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCHH-
Confidence 9999753 4555 4999999999999999999999999999999999999999999988765 459999999987
Q ss_pred HHHhcCCeEEEEeCCeEEEecC
Q 007383 234 KILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 234 ~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
.+.++||++++|++|+++..|+
T Consensus 960 ~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 960 FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHTTTCCEEECCBTTBCCC---
T ss_pred HHHHhCCEEEEEECCEEEEeCC
Confidence 4788999999999999987764
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.3e-36 Score=343.04 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=140.5
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHH---------------------HHHhCCCCCC-------ccEEEECCee
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLL---------------------DILSARTSPT-------NGTILLNSSP 103 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL---------------------~~l~g~~~~~-------~G~I~~~g~~ 103 (605)
.+.+|+||||++++||++||+||||||||||+ ++++|+.+|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 8899998887 5566676665
Q ss_pred CCcccccCceEEEcCCCC-------------------CCCCCCHHHHHHHHHhcC-CC-ChhHHHH------HHHHHHHH
Q 007383 104 IKPSSFRKLSAYVPQHDA-------------------CIPSLTVYETFLFSARLL-VP-KTSQIDT------IITVLLTE 156 (605)
Q Consensus 104 ~~~~~~~~~i~yv~Q~~~-------------------l~~~lTv~e~l~~~~~~~-~~-~~~~~~~------~v~~~l~~ 156 (605)
... ..++.+|+|+|... .++.+||+||+.+..... .. .....+. ...++++.
T Consensus 110 ~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 421 22344566655432 245789999998753321 11 0000111 11235888
Q ss_pred cCCccc-ccccccCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCh
Q 007383 157 LRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHDPA--VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSF 233 (605)
Q Consensus 157 l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~P~--illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 233 (605)
+||.+. .++. +.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++ |.|||++|||++
T Consensus 189 ~gL~~~~~~~~-~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~- 265 (670)
T 3ux8_A 189 VGLDYLTLSRS-AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDED- 265 (670)
T ss_dssp TTCTTCCTTCB-GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHH-
T ss_pred cCCchhhhcCC-cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-
Confidence 999765 4666 59999999999999999999998 99999999999999999999999999764 899999999986
Q ss_pred HHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 234 KILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 234 ~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
....||++++| ++|++++.|+++++.
T Consensus 266 -~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 266 -TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp -HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred -HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 34569999999 899999999998874
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.9e-33 Score=321.94 Aligned_cols=197 Identities=27% Similarity=0.351 Sum_probs=151.2
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh----------------------CCCCCCccEEEECCeeCCccc--
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILS----------------------ARTSPTNGTILLNSSPIKPSS-- 108 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~----------------------g~~~~~~G~I~~~g~~~~~~~-- 108 (605)
+.+|+|||++|++||++||+||||||||||+++|. |+.+ .+|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998764 3222 3568888887753100
Q ss_pred ------------------------------------------ccCceEEEcCCCCCCC----------------------
Q 007383 109 ------------------------------------------FRKLSAYVPQHDACIP---------------------- 124 (605)
Q Consensus 109 ------------------------------------------~~~~i~yv~Q~~~l~~---------------------- 124 (605)
..+..|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0011234444332222
Q ss_pred ----------CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhhCC---C
Q 007383 125 ----------SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHDP---A 190 (605)
Q Consensus 125 ----------~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~P---~ 190 (605)
.+||.||+.+.... ...++..+.++.+++... .++. +.+|||||||||+|||||+.+| +
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgG~~qrv~iAraL~~~p~~p~ 566 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI------PKIKRKLETLYDVGLGYMKLGQP-ATTLSGGEAQRVKLAAELHRRSNGRT 566 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC------HHHHHHHHHHHHTTCTTSBTTCC-GGGCCHHHHHHHHHHHHHHSCCCSCE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh------hhHHHHHHHHHHcCCchhhccCC-chhCCHHHHHHHHHHHHHhhCCCCCc
Confidence 47999999875421 223456678888999653 4555 5999999999999999999887 5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 191 VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 191 illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
+|||||||+|||+.++..++++|++++++ |+|||++|||++. .+.||++++| ++|++++.|+++++.
T Consensus 567 llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~--~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 567 LYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHH--HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999865 8999999999963 4679999999 899999999999873
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=316.94 Aligned_cols=189 Identities=27% Similarity=0.381 Sum_probs=147.2
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-----------ECCeeCCc---ccccCc--eEEE
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTIL-----------LNSSPIKP---SSFRKL--SAYV 116 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~-----------~~g~~~~~---~~~~~~--i~yv 116 (605)
...|++++ .+++||++||+||||||||||||+|+|+++|++|+|. +.|.++.. ....+. ..+.
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhc
Confidence 34677777 6899999999999999999999999999999999982 33332210 001111 1233
Q ss_pred cCCCCC------CCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCC
Q 007383 117 PQHDAC------IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPA 190 (605)
Q Consensus 117 ~Q~~~l------~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 190 (605)
+|.... -+..++.+++.... ++.+++++++++.+||.+..++.+ .+|||||||||+||+||+.+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~l~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~-~~LSgGe~Qrv~iAraL~~~p~ 241 (608)
T 3j16_B 170 PQYVDNIPRAIKGPVQKVGELLKLRM-------EKSPEDVKRYIKILQLENVLKRDI-EKLSGGELQRFAIGMSCVQEAD 241 (608)
T ss_dssp CCCTTTHHHHCSSSSSHHHHHHHHHC-------CSCHHHHHHHHHHHTCTGGGGSCT-TTCCHHHHHHHHHHHHHHSCCS
T ss_pred hhhhhhhhhhhcchhhHHHHHHhhhh-------hhHHHHHHHHHHHcCCcchhCCCh-HHCCHHHHHHHHHHHHHHhCCC
Confidence 443211 12235666554321 122457889999999998888885 9999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEE
Q 007383 191 VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 191 illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
+|+|||||+|||+.++..+.++|++++++ |+|||++|||++ ++..++|++++|++|..++
T Consensus 242 llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 242 VYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999764 889999999998 5889999999999876444
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-33 Score=314.18 Aligned_cols=174 Identities=24% Similarity=0.284 Sum_probs=140.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE-----------EECCeeCCc---ccc--cCceEEEcCC----CCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI-----------LLNSSPIKP---SSF--RKLSAYVPQH----DAC 122 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I-----------~~~g~~~~~---~~~--~~~i~yv~Q~----~~l 122 (605)
.++||++||+||||||||||+|+|+|+++|++|+| .++|+++.. ... ...+..+.|. +.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 35999999999999999999999999999999998 677766521 001 1123334443 333
Q ss_pred CCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 007383 123 IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLD 202 (605)
Q Consensus 123 ~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD 202 (605)
+ ..||.|++... +.+++++++++.+|+.+..++.+ .+|||||||||+||+||+.+|++|+|||||++||
T Consensus 102 ~-~~~v~~~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~-~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD 170 (538)
T 3ozx_A 102 L-KGTVNEILTKI---------DERGKKDEVKELLNMTNLWNKDA-NILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170 (538)
T ss_dssp C-CSBHHHHHHHH---------CCSSCHHHHHHHTTCGGGTTSBG-GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred c-cCcHHHHhhcc---------hhHHHHHHHHHHcCCchhhcCCh-hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 3 34888866421 11235678899999998888885 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeE
Q 007383 203 SRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSV 250 (605)
Q Consensus 203 ~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~i 250 (605)
+.++..+.++|++++ + |+|||+++||++ ++..++|++++|++|..
T Consensus 171 ~~~~~~l~~~l~~l~-~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 171 VRERMNMAKAIRELL-K-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp HHHHHHHHHHHHHHC-T-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHh-C-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 999999999999996 3 799999999997 58899999999987543
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=4.3e-31 Score=307.27 Aligned_cols=197 Identities=27% Similarity=0.409 Sum_probs=154.0
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHH---------HHHhCCCCC------Ccc------EEEECCeeCCcc-----
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLL---------DILSARTSP------TNG------TILLNSSPIKPS----- 107 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL---------~~l~g~~~~------~~G------~I~~~g~~~~~~----- 107 (605)
..|+|||+++++|++++|+||||||||||+ +.+.+...+ .+| .+.+++.++...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 455554333 222 355555443210
Q ss_pred ---------------------------------------cccCceEEEcCCCCCCC------------------------
Q 007383 108 ---------------------------------------SFRKLSAYVPQHDACIP------------------------ 124 (605)
Q Consensus 108 ---------------------------------------~~~~~i~yv~Q~~~l~~------------------------ 124 (605)
...+..|++.|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 00123477777766554
Q ss_pred --------CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccc-cccccCCCCHHHHHHHHHHHHHhhCC---CEE
Q 007383 125 --------SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLA-STRLAHNLSGGERRRVSIGLSLLHDP---AVL 192 (605)
Q Consensus 125 --------~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~~~~~LSgGerqRv~ia~aL~~~P---~il 192 (605)
.+||.|++.|.... ...+++.++++.+||.... ++. +.+|||||||||+||+||+++| ++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~-~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQP-ATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCC-STTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred cCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCC-ccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 36888888875421 2345677899999997643 444 5899999999999999999875 799
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 193 LLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 193 lLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
||||||+|||+.+...+++.|++++++ |.|||+++||++ ..+.||+|++| ++|++++.|+++++.
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 999999999999999999999999864 889999999986 34669999999 899999999999874
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=4.9e-31 Score=304.47 Aligned_cols=207 Identities=28% Similarity=0.336 Sum_probs=157.4
Q ss_pred cceEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHH-HhCCC-------CC
Q 007383 21 TYKLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDI-LSART-------SP 92 (605)
Q Consensus 21 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~-l~g~~-------~~ 92 (605)
...|+++|+++ ..|+|||++|++||++||+|+||||||||++. |+|++ +|
T Consensus 500 ~~~L~v~~l~~----------------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~ 557 (842)
T 2vf7_A 500 AGWLELNGVTR----------------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVN 557 (842)
T ss_dssp SCEEEEEEEEE----------------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC---
T ss_pred CceEEEEeeee----------------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 34689999864 15999999999999999999999999999996 76442 22
Q ss_pred ------------------Ccc-------EEEECCeeCCcc-------------ccc---------CceEEEcC-------
Q 007383 93 ------------------TNG-------TILLNSSPIKPS-------------SFR---------KLSAYVPQ------- 118 (605)
Q Consensus 93 ------------------~~G-------~I~~~g~~~~~~-------------~~~---------~~i~yv~Q------- 118 (605)
.+| .|.++|+++... .+| +..||.++
T Consensus 558 ~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~ 637 (842)
T 2vf7_A 558 PDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVK 637 (842)
T ss_dssp --------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSST
T ss_pred ccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCcccccccccc
Confidence 366 688998876311 011 01122211
Q ss_pred ---------------CCCCCC--------------------------------CCCHHHHHHHHHhcCCCChhHHHHHHH
Q 007383 119 ---------------HDACIP--------------------------------SLTVYETFLFSARLLVPKTSQIDTIIT 151 (605)
Q Consensus 119 ---------------~~~l~~--------------------------------~lTv~e~l~~~~~~~~~~~~~~~~~v~ 151 (605)
+..+++ .+|+.|++.|... ....+++.
T Consensus 638 ~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~~~~~~~~ 711 (842)
T 2vf7_A 638 GGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD------ESAIFRAL 711 (842)
T ss_dssp TTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------SHHHHHHH
T ss_pred ccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------chHHHHHH
Confidence 111111 2355555544211 12235688
Q ss_pred HHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 007383 152 VLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHD---PAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILS 227 (605)
Q Consensus 152 ~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~---P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~ 227 (605)
++++.+||... .++. +..|||||||||+||++|+.+ |++|||||||+|||+.+...+.++|++++++ |.|||++
T Consensus 712 ~~L~~~gL~~~~l~~~-~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvi 789 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQP-ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAV 789 (842)
T ss_dssp HHHHHTTCTTSBTTCC-GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHcCCCcccccCC-cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 99999999874 4556 599999999999999999996 7999999999999999999999999999864 8899999
Q ss_pred eCCCChHHHhcCCeEEEE------eCCeEEEecChhhH
Q 007383 228 IHQPSFKILSTIDRILLL------SKGSVVHHGTLASL 259 (605)
Q Consensus 228 ~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~ 259 (605)
+||++ .+ +.||++++| ++|++++.|+++++
T Consensus 790 sHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 790 EHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEV 825 (842)
T ss_dssp CCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred cCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHH
Confidence 99987 35 889999999 79999999999886
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=6.4e-31 Score=303.92 Aligned_cols=196 Identities=30% Similarity=0.391 Sum_probs=153.4
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh-CCC---------CCC-----cc------EEEECCeeCCc--c----
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILS-ART---------SPT-----NG------TILLNSSPIKP--S---- 107 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~-g~~---------~~~-----~G------~I~~~g~~~~~--~---- 107 (605)
.|+|||++|++||++||+|+||||||||+++|. |.+ .+. .| .|.++|.++.. .
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 599999999999999999999999999999853 211 111 23 47888887631 1
Q ss_pred -------cc---------cCceEEEcCCCCCC----------------------C-------------------------
Q 007383 108 -------SF---------RKLSAYVPQHDACI----------------------P------------------------- 124 (605)
Q Consensus 108 -------~~---------~~~i~yv~Q~~~l~----------------------~------------------------- 124 (605)
.. .+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 00 12357777743221 1
Q ss_pred -------CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHHHHHHHHHHhhCC---CEEE
Q 007383 125 -------SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDP---AVLL 193 (605)
Q Consensus 125 -------~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqRv~ia~aL~~~P---~ill 193 (605)
.+||.|++.|.... ...+++.++++.+||.. ..++. +.+|||||||||+||++|+.+| ++||
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~~------~~~~~~~~~L~~~gL~~~~l~~~-~~~LSGGekQRv~LAraL~~~p~~p~lLI 871 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFASI------PKIKRKLETLYDVGLGYMKLGQP-ATTLSGGEAQRVKLAAELHRRSNGRTLYI 871 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCSC------HHHHHHHHHHHHTTCSSSBTTCC-GGGCCHHHHHHHHHHHHHSSCCCSCEEEE
T ss_pred CCHHHhhhcCHHHHHHHHhcc------hhHHHHHHHHHHcCCCcccccCc-hhhCCHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 46788888764321 12234578999999987 55666 4999999999999999999865 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 194 LDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 194 LDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
|||||+|||+.++..+++.|+++++ .|.|||+++||++. + +.+|++++| ++|++++.|+++++.
T Consensus 872 LDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~-i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 872 LDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDV-I-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH-H-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999999986 48899999999863 4 689999999 789999999998874
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=4e-30 Score=298.30 Aligned_cols=196 Identities=28% Similarity=0.387 Sum_probs=150.8
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh-C----CCC---CCccE-------------EEECCeeCCc--c----
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILS-A----RTS---PTNGT-------------ILLNSSPIKP--S---- 107 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~-g----~~~---~~~G~-------------I~~~g~~~~~--~---- 107 (605)
+|+|||++|++||++||+|+||||||||+++|. | .+. +..|. |.+++.++.. .
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 599999999999999999999999999999853 2 221 12332 5556655421 0
Q ss_pred -------cc---------cCceEEEcCCCCCC----------------------C-------------------------
Q 007383 108 -------SF---------RKLSAYVPQHDACI----------------------P------------------------- 124 (605)
Q Consensus 108 -------~~---------~~~i~yv~Q~~~l~----------------------~------------------------- 124 (605)
.. .+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 00 12356776643211 1
Q ss_pred -------CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHHHHHHHHHHhhCC---CEEE
Q 007383 125 -------SLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERRRVSIGLSLLHDP---AVLL 193 (605)
Q Consensus 125 -------~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqRv~ia~aL~~~P---~ill 193 (605)
.+||.|++.|.... ...+++.++++.+||.. ..++. +.+|||||||||+||++|+.+| ++||
T Consensus 817 ~si~dvl~ltv~e~l~~~~~~------~~~~~~~~~L~~lgL~~~~l~~~-~~~LSGGekQRv~LAraL~~~p~~p~lLI 889 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEPI------AGVHRYLRTLVDVGLGYVRLGQP-APTLSGGEAQRVKLASELQKRSTGRTVYI 889 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTTC------HHHHHHHHHHHHTTGGGSBTTCC-GGGSCHHHHHHHHHHHHHSSCCCSSEEEE
T ss_pred CCHHHHhhccHHHHHHHhhcc------hHHHHHHHHHHHcCCCcccccCc-cccCCHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 35777877764321 12234578999999987 55666 5999999999999999999865 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 194 LDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 194 LDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
|||||+|||+.+...++++|++++++ |.|||+++||++. + +.||++++| ++|++++.|+++++.
T Consensus 890 LDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~-i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 890 LDEPTTGLHFDDIRKLLNVINGLVDK-GNTVIVIEHNLDV-I-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHH-H-TTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH-H-HhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999764 8899999999873 4 789999999 689999999998874
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=6.1e-30 Score=276.23 Aligned_cols=194 Identities=21% Similarity=0.271 Sum_probs=146.3
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC--------------------------------------CCcc
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS--------------------------------------PTNG 95 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~--------------------------------------~~~G 95 (605)
.+++++|+++++| +++|+|||||||||||++|+++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 999999999999999999977664 3478
Q ss_pred EEEECCeeCCc---cccc-CceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-------------------------C----
Q 007383 96 TILLNSSPIKP---SSFR-KLSAYVPQHDACIPSLTVYETFLFSARLLVP-------------------------K---- 142 (605)
Q Consensus 96 ~I~~~g~~~~~---~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-------------------------~---- 142 (605)
++.+||++++. ..+. ..+++++|++.++.. +..+...|.-..... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999863 2233 348999999876543 555554443221100 0
Q ss_pred -------------------------------hhHHHHHHHHHHHHcCCcccc----------------c-----------
Q 007383 143 -------------------------------TSQIDTIITVLLTELRLAHLA----------------S----------- 164 (605)
Q Consensus 143 -------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~----------- 164 (605)
.....+.+++.++.+++.+.. +
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000123345556666654310 0
Q ss_pred ---ccccCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhc
Q 007383 165 ---TRLAHN-LSGGERRRVSIGLSLLHDP--AVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILST 238 (605)
Q Consensus 165 ---~~~~~~-LSgGerqRv~ia~aL~~~P--~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 238 (605)
+. .+. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ + |.|||++||++. +.+.
T Consensus 287 ~~~~~-~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~--~~~~ 361 (415)
T 4aby_A 287 EELGP-LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQ--IAAR 361 (415)
T ss_dssp CCCCB-GGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHH--HHTT
T ss_pred Ccccc-hhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHH--HHhh
Confidence 11 122 7999999999999999999 9999999999999999999999999997 3 789999999984 5688
Q ss_pred CCeEEEE----eCCeEEEec
Q 007383 239 IDRILLL----SKGSVVHHG 254 (605)
Q Consensus 239 ~d~v~~l----~~G~iv~~g 254 (605)
+|++++| ++|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987553
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8e-33 Score=301.96 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=150.9
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc-E-EEECCeeCCcccccCceEEEcCCCC---CCCCCCHHHH
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG-T-ILLNSSPIKPSSFRKLSAYVPQHDA---CIPSLTVYET 131 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G-~-I~~~g~~~~~~~~~~~i~yv~Q~~~---l~~~lTv~e~ 131 (605)
.++|+++++|++++|+||||||||||+|+|+|+.+|++| + |.+||. .++.++|++|+.. +.+.+||+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~en 202 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLP 202 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhh
Confidence 478899999999999999999999999999999999999 9 999982 2577999999974 4556899999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-CCCCCCHH
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLS--LLHDPAV----LLLDE-PTSGLDSR 204 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~a--L~~~P~i----llLDE-PtsgLD~~ 204 (605)
+ ++....... ..++++.++++.+|+.+..+ +.+|||||||||+||++ |+.+|++ ||||| ||+|||+.
T Consensus 203 i-~~~~~~~~~--~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 203 T-WGQSLTSGA--TLLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp T-CSCBCBSSC--CSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred h-cccccccCc--chHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence 8 654321111 11234556778889877665 48999999999999999 9999999 99999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCC--h---HHHhcCCe-----EEEEe-CCeEEEecChhhH
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPS--F---KILSTIDR-----ILLLS-KGSVVHHGTLASL 259 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~--~---~i~~~~d~-----v~~l~-~G~iv~~g~~~~~ 259 (605)
...+.+++++ .++|+|+++|+.+ . ++.+++|+ +++|+ +|+++ .|+++++
T Consensus 277 -~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 277 -LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp -CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred -HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 5555554443 3679999999987 2 35688999 99999 99999 8998765
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=1.9e-30 Score=254.80 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=103.8
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCC--cccccCceEEEcCCCCCCCCCCH
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK--PSSFRKLSAYVPQHDACIPSLTV 128 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~--~~~~~~~i~yv~Q~~~l~~~lTv 128 (605)
+.+.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++. ....++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH--------
Confidence 346799996 89999999999999999999999999 999999942 2221 224567899999976
Q ss_pred HHHH-HHHH----hcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007383 129 YETF-LFSA----RLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS 203 (605)
Q Consensus 129 ~e~l-~~~~----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~ 203 (605)
+||+ .+.. .+... ...++++++++. ++ ||||||+|||||+.+|++|||||||+|
T Consensus 76 ~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~--- 134 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT--- 134 (208)
T ss_dssp ----CTTTHHHHHHHTTT---SCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 4444 2211 11110 011234445443 32 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 204 RSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 204 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
++..+.+.|+++ + .|+||| +|||++
T Consensus 135 -~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 135 -TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp -CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred -cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 889999999998 4 478999 999986
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=2.8e-26 Score=244.01 Aligned_cols=82 Identities=29% Similarity=0.465 Sum_probs=75.8
Q ss_pred cCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCe
Q 007383 168 AHNLSGGERRRVSIGLSLL------HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDR 241 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~ 241 (605)
+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++ ..+.+|+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d~ 353 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFDR 353 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCSC
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 5789999999999999999 79999999999999999999999999999975 4899999999986 4688999
Q ss_pred EEEEeCCeEEE
Q 007383 242 ILLLSKGSVVH 252 (605)
Q Consensus 242 v~~l~~G~iv~ 252 (605)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999864
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.2e-25 Score=235.22 Aligned_cols=196 Identities=20% Similarity=0.259 Sum_probs=127.5
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC----------------------------------------------
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSART---------------------------------------------- 90 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~---------------------------------------------- 90 (605)
+++++++.+| +++|+||||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 99999999999999999998443
Q ss_pred ----CCCccEEEECCeeCCcc---cccCceEEEcCCCCCCCCCCHHHHHHHHHh------------cCCC-ChhHHHHH-
Q 007383 91 ----SPTNGTILLNSSPIKPS---SFRKLSAYVPQHDACIPSLTVYETFLFSAR------------LLVP-KTSQIDTI- 149 (605)
Q Consensus 91 ----~~~~G~I~~~g~~~~~~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~------------~~~~-~~~~~~~~- 149 (605)
.+.+|++.+||++.... ...+.+++.+|+..+.+.-++.+++..... +.+. ..++..+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22357889999876422 223345555554443322233333322110 0000 00001111
Q ss_pred --------------------HHHHHHH-cCC----cccccccccCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCC
Q 007383 150 --------------------ITVLLTE-LRL----AHLASTRLAHNLSGGERRRVSIGLSLL----HDPAVLLLDEPTSG 200 (605)
Q Consensus 150 --------------------v~~~l~~-l~L----~~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~illLDEPtsg 200 (605)
..+.++. +++ .+..+.. +..||||||||++||++|+ .+|++|+|||||++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~-~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQK-LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCB-GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCc-hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1122222 111 1223344 4899999999999999997 58899999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeE--EEEeCCeE-EEecChhh
Q 007383 201 LDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRI--LLLSKGSV-VHHGTLAS 258 (605)
Q Consensus 201 LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v--~~l~~G~i-v~~g~~~~ 258 (605)
||+..+..+.+.|++++ + |.|||++||+++ +.+.+|++ ++|.+|.. +.....++
T Consensus 254 LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 254 LDDYNAERFKRLLKENS-K-HTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CCHHHHHHHHHHHHHHT-T-TSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CCHHHHHHHHHHHHHhc-C-CCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 99999999999999984 3 789999999964 67899987 78887754 44444444
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.92 E-value=1.8e-28 Score=263.34 Aligned_cols=173 Identities=13% Similarity=0.197 Sum_probs=140.4
Q ss_pred CceeeeeeeEEEeCCe--------------------EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccC
Q 007383 52 PTYILKNVSLTAYPSQ--------------------ILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRK 111 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge--------------------~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~ 111 (605)
.+.+|+|+|+++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+.+ +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t----~- 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT----M- 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC--------C-
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc----e-
Confidence 4569999999999999 99999999999999999999999999999999997653 1
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHH--HHHHHHHHHHHhh--
Q 007383 112 LSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG--ERRRVSIGLSLLH-- 187 (605)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG--erqRv~ia~aL~~-- 187 (605)
.++++|++ .++.+|+.|++.++.. +.+++++++.+++.+. +..+ . +||| ||||+.||++|+.
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~---------~~~~~~~L~~~~L~~~-~~~~-~-lS~G~~~kqrv~la~aL~~~~ 175 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGST---------NFPPDTYLEKMKFYEY-DFFI-I-ISATRFKKNDIDIAKAISMMK 175 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGS---------SCCHHHHHHHTTGGGC-SEEE-E-EESSCCCHHHHHHHHHHHHTT
T ss_pred -eEEecccc-ccCCeeehHhhcccch---------HHHHHHHHHHcCCCcc-CCeE-E-eCCCCccHHHHHHHHHHHhcC
Confidence 27899985 5678899888755421 2346788999998765 3333 3 9999 9999999999999
Q ss_pred --------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC----CcEEEEEeCCCCh-HHHhcCCeEE
Q 007383 188 --------DPAVLLLDEPTSGLDSRSAFNVMQTLKSISA----SR----HRTVILSIHQPSF-KILSTIDRIL 243 (605)
Q Consensus 188 --------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~----~~----g~tii~~~H~~~~-~i~~~~d~v~ 243 (605)
+|++++|||||+|||+.++.++.+.|+++.+ +. ..+|++++|+.+. ++.+++|++.
T Consensus 176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999999999999999999999999999852 22 3678999998762 2566666654
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=2.3e-26 Score=218.62 Aligned_cols=143 Identities=12% Similarity=0.193 Sum_probs=102.5
Q ss_pred eeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCC-CCCCHHHHHHHHH
Q 007383 58 NVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACI-PSLTVYETFLFSA 136 (605)
Q Consensus 58 ~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~-~~lTv~e~l~~~~ 136 (605)
|+|+++++||+++|+||||||||||+|++.+ |...++ .+.. .|+++|++.-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~-----~d~~---~g~~~~~~~~~~~~~~~~~~~~--- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS-----SDFC---RGLMSDDENDQTVTGAAFDVLH--- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE-----HHHH---HHHHCSSTTCGGGHHHHHHHHH---
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc-----cHHH---HHHhcCcccchhhHHHHHHHHH---
Confidence 6899999999999999999999999999653 211111 1111 26777764211 0011222211
Q ss_pred hcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH------------
Q 007383 137 RLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSR------------ 204 (605)
Q Consensus 137 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~------------ 204 (605)
... ......|.....+.. ...|||||||++||++++.+|++|+|||||+|||+.
T Consensus 64 -----------~~~-~~~~~~g~~~~~~~~--~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~ 129 (171)
T 4gp7_A 64 -----------YIV-SKRLQLGKLTVVDAT--NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEY 129 (171)
T ss_dssp -----------HHH-HHHHHTTCCEEEESC--CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHH
T ss_pred -----------HHH-HHHHhCCCeEEEECC--CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHH
Confidence 111 122234554444433 456999999999999999999999999999999999
Q ss_pred ----HHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 205 ----SAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 205 ----~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
.+..+.+.|++++++ |.|+|++|||++
T Consensus 130 vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~ 160 (171)
T 4gp7_A 130 VIRKHTQQMKKSIKGLQRE-GFRYVYILNSPE 160 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHH-TCSEEEEECSHH
T ss_pred HHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHH
Confidence 669999999999876 899999999986
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=6.8e-29 Score=243.15 Aligned_cols=181 Identities=12% Similarity=0.049 Sum_probs=125.7
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
+.+.+++| .++++||+++|+||||||||||+|+|+|+++...+.+.+.+.+.. ...++.++|++|++..++.+|+.|
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcC
Confidence 45678888 799999999999999999999999999998643332222221111 123567899999988888888887
Q ss_pred HHHHHH------hcCCCChhHHHHHHHHH------HHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 007383 131 TFLFSA------RLLVPKTSQIDTIITVL------LTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPT 198 (605)
Q Consensus 131 ~l~~~~------~~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPt 198 (605)
++.... ..++.+.++.++++++. ++.+|+.+..+.. ++.|| +|+.+|++++|||||
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~lS-----------~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-PEAVT-----------VFLAPPSWQDLQARL 151 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-TTSEE-----------EEEECSCHHHHHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-CCcEE-----------EEEECCCHHHHHHHH
Confidence 764221 11222334455566665 5666666655555 47788 899999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 199 SGL----DSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 199 sgL----D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+|+ |+..+.++.+.+++++++.|.|+|+++||++ ++.+++|++++|.+
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 998 7889999999999998666899999999998 58999999999853
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=5.1e-25 Score=210.94 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=103.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-c--cccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChh
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-S--SFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTS 144 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-~--~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 144 (605)
.++|+||||||||||+++|+|++. |.++|.+... . ..++.+||++|+. ++.+++ + +.. ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~-~~~~- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSK-FFTS- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EET-TCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhh-cCCc-
Confidence 589999999999999999999985 4455644311 1 3457799999975 222332 1 111 0000
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHH
Q 007383 145 QIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLS-----LLHDPAVLLLDE--PTSGLDSRSAFNVMQTLKSIS 217 (605)
Q Consensus 145 ~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~a-----L~~~P~illLDE--PtsgLD~~~~~~i~~~L~~l~ 217 (605)
.+..++. +..||||||||++||++ |+.+|++++||| ||++||+.....+.+.+++
T Consensus 67 ---------------~~~~~~~-~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-- 128 (178)
T 1ye8_A 67 ---------------KKLVGSY-GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-- 128 (178)
T ss_dssp ---------------SSEETTE-EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--
T ss_pred ---------------ccccccc-ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--
Confidence 0233444 48899999999999996 999999999999 9999999999999988865
Q ss_pred hcCCcEEEEEeC---CCChHHHhcCCeEEEEeCCeEEE
Q 007383 218 ASRHRTVILSIH---QPSFKILSTIDRILLLSKGSVVH 252 (605)
Q Consensus 218 ~~~g~tii~~~H---~~~~~i~~~~d~v~~l~~G~iv~ 252 (605)
.+.|+|+++| +.+ .+.+++|+ .+|+++.
T Consensus 129 --~~~~~i~~~H~~h~~~-~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHP-LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp --TTSEEEEECCSSCCSH-HHHHHHTC----TTCEEEE
T ss_pred --CCCeEEEEEccCCCch-HHHHHHhc----CCcEEEE
Confidence 3677888886 654 47778887 4566654
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=3e-28 Score=251.69 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=131.0
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||++.| + +.+|+|+|+++++|++++|+||||||||||+++|+|++ +|+|
T Consensus 101 ~i~~~~vs~~y-----------------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I----- 154 (305)
T 2v9p_A 101 FFNYQNIELIT-----------------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV----- 154 (305)
T ss_dssp HHHHTTCCHHH-----------------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-----
T ss_pred eEEEEEEEEEc-----------------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-----
Confidence 47888888877 2 46999999999999999999999999999999999998 7888
Q ss_pred eCCcccccCceEEEcCCCCCCCCCCHHH-HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH
Q 007383 103 PIKPSSFRKLSAYVPQHDACIPSLTVYE-TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI 181 (605)
Q Consensus 103 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e-~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i 181 (605)
++|++|++.+++. |++| |+.+.... + +.+.+.++.+ |.+..+ +..||||||||
T Consensus 155 ----------~~~v~q~~~lf~~-ti~~~ni~~~~~~---~-----~~~~~~i~~~-L~~gld---g~~LSgGqkQR--- 208 (305)
T 2v9p_A 155 ----------LSFANHKSHFWLA-SLADTRAALVDDA---T-----HACWRYFDTY-LRNALD---GYPVSIDRKHK--- 208 (305)
T ss_dssp ----------ECGGGTTSGGGGG-GGTTCSCEEEEEE---C-----HHHHHHHHHT-TTGGGG---TCCEECCCSSC---
T ss_pred ----------EEEecCccccccc-cHHHHhhccCccc---c-----HHHHHHHHHH-hHccCC---ccCcCHHHHHH---
Confidence 3467888777764 7776 66553111 1 1344555553 443333 47899999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHH
Q 007383 182 GLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLET 261 (605)
Q Consensus 182 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~ 261 (605)
||||+.+|+||| |++||+.+...+.. .+|+++ ..+.+|++ +|++|++++.|+.+++..
T Consensus 209 ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~ 266 (305)
T 2v9p_A 209 AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKS 266 (305)
T ss_dssp CCCEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHH
T ss_pred HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHH
Confidence 999999999999 99999999888752 188876 46889999 999999999999998854
Q ss_pred HHHh
Q 007383 262 FLLS 265 (605)
Q Consensus 262 ~~~~ 265 (605)
.+.+
T Consensus 267 ~y~~ 270 (305)
T 2v9p_A 267 FFVR 270 (305)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=7.3e-26 Score=234.49 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=137.6
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc-------cc--cCceEEEcCCCC-CCCC
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS-------SF--RKLSAYVPQHDA-CIPS 125 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~-------~~--~~~i~yv~Q~~~-l~~~ 125 (605)
++++|+++++|++++|+||||||||||++.|+|+++|++|+|.++|.+.... .+ +..++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 3578999999999999999999999999999999999999999999886421 22 346999999988 8889
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCH
Q 007383 126 LTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPA--VLLLDEPTSGLDS 203 (605)
Q Consensus 126 lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~--illLDEPtsgLD~ 203 (605)
+||+|++.++... ... ..+++.+|+.+..++. +++|| |||++||++|+.+|+ +|+|| ||+|||+
T Consensus 170 ~~v~e~l~~~~~~-~~d--------~~lldt~gl~~~~~~~-~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~ 235 (302)
T 3b9q_A 170 TVLSKAVKRGKEE-GYD--------VVLCDTSGRLHTNYSL-MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 235 (302)
T ss_dssp HHHHHHHHHHHHT-TCS--------EEEECCCCCSSCCHHH-HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGG
T ss_pred HHHHHHHHHHHHc-CCc--------chHHhcCCCCcchhHH-HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCH
Confidence 9999999886421 100 1345677887666555 48899 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCC--------hHHHhcCCeEEEEeCCeE
Q 007383 204 RSAFNVMQTLKSISASRHRTVILSIHQPS--------FKILSTIDRILLLSKGSV 250 (605)
Q Consensus 204 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~--------~~i~~~~d~v~~l~~G~i 250 (605)
.++ ++++.++.|.|+|++||... ..+.+..+.|.++..|+.
T Consensus 236 ~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 236 LPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 755 34555455899999999432 123355678899988864
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=5e-25 Score=224.72 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=100.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHH
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQID 147 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~ 147 (605)
.++|+||||||||||+|+|+|+.+|++|+|.++|+++.....++.++|++|++.+++.+||.||+.|+...... +..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~---~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE---NCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT---TCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH---HHH
Confidence 48999999999999999999999999999999999876555567899999999999999999999887644221 111
Q ss_pred HHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 007383 148 TIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILS 227 (605)
Q Consensus 148 ~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~ 227 (605)
+.+.+.++ .+..+.. +.+||||||||+++||+++. +++||||++|||+.. .+.++++++. .+||++
T Consensus 81 ~~i~~~~~----~~~~~~~-~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~V 146 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFL-KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPV 146 (270)
T ss_dssp HHHHHHHH----HHHHHHH-HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEE
T ss_pred HHHHHHHH----HHHHhhh-HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEE
Confidence 22333333 2333444 48999999999999999875 999999999999987 5666677543 799999
Q ss_pred eCCCC
Q 007383 228 IHQPS 232 (605)
Q Consensus 228 ~H~~~ 232 (605)
+|..+
T Consensus 147 i~K~D 151 (270)
T 3sop_A 147 IAKAD 151 (270)
T ss_dssp ETTGG
T ss_pred Eeccc
Confidence 98754
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=1.2e-24 Score=229.89 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=138.1
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc-------cc--cCceEEEcCCCC-CCCCC
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS-------SF--RKLSAYVPQHDA-CIPSL 126 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~-------~~--~~~i~yv~Q~~~-l~~~l 126 (605)
+.+|+++++|++++|+||||||||||++.|+|+++|++|+|.++|.++... .+ +..++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 468889999999999999999999999999999999999999999886421 12 346999999988 88899
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHH
Q 007383 127 TVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPA--VLLLDEPTSGLDSR 204 (605)
Q Consensus 127 Tv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~--illLDEPtsgLD~~ 204 (605)
|++|++.++... ... ..+++.+|+.+..++. +.+|| |||++||++|+.+|+ +|+|| ||+|||+.
T Consensus 228 tv~e~l~~~~~~-~~d--------~~lldt~Gl~~~~~~~-~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~ 293 (359)
T 2og2_A 228 VLSKAVKRGKEE-GYD--------VVLCDTSGRLHTNYSL-MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 293 (359)
T ss_dssp HHHHHHHHHHHT-TCS--------EEEEECCCCSSCCHHH-HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred hHHHHHHHHHhC-CCH--------HHHHHhcCCChhhhhH-HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence 999999986431 100 1245667887665555 48899 999999999999999 99999 99999998
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCC--------hHHHhcCCeEEEEeCCeE
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPS--------FKILSTIDRILLLSKGSV 250 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~--------~~i~~~~d~v~~l~~G~i 250 (605)
++. +++.++.|.|+|++||... ..+....+.|.++..|+.
T Consensus 294 ~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 294 PQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 653 4555445899999999421 113355678998888864
No 77
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=2.6e-25 Score=241.35 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=153.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++.+|+++.|. ..+.+|+++ +++.+||+++|+||||||||||+++|+|+.+|++|.|.++|+
T Consensus 131 ~l~~~~v~~~~~----------------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 131 PLQRTPIEHVLD----------------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp TTTSCCCCSBCC----------------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ceEEeccceecC----------------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 367777777662 145699999 999999999999999999999999999999999999999998
Q ss_pred ---eCCc--------ccccCceEEEcCC-CCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCC
Q 007383 103 ---PIKP--------SSFRKLSAYVPQH-DACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHN 170 (605)
Q Consensus 103 ---~~~~--------~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~ 170 (605)
++.. ..+++.++|++|+ +..++.+||.+|+.+.+..+... .-......+. ...
T Consensus 194 r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------------~~~v~~~ld~--l~~ 258 (438)
T 2dpy_A 194 RGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------------GQHVLLIMDS--LTR 258 (438)
T ss_dssp CHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------------TCEEEEEEEC--HHH
T ss_pred ecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------------CCCHHHHHHh--HHH
Confidence 4421 2356789999995 55677889999998876431100 0001111222 367
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCc-----EEEEEeCCCChHHHhcCCeE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISA---SRHR-----TVILSIHQPSFKILSTIDRI 242 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~---~~g~-----tii~~~H~~~~~i~~~~d~v 242 (605)
+|+|| ||++|| +.+|++ |+|||+.....+.++++++.+ +.|+ ||++++||++ ..++|++
T Consensus 259 lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v 325 (438)
T 2dpy_A 259 YAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSA 325 (438)
T ss_dssp HHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHH
T ss_pred HHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceE
Confidence 99999 999999 889988 999999999999999999875 2364 9999999997 4679999
Q ss_pred EEEeCCeEEEecChhhH
Q 007383 243 LLLSKGSVVHHGTLASL 259 (605)
Q Consensus 243 ~~l~~G~iv~~g~~~~~ 259 (605)
++|.+|+++..|+++++
T Consensus 326 ~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 326 RAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHSSEEEEECHHHHHT
T ss_pred EEEeCcEEEEeCCHHHc
Confidence 99999999999887665
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.87 E-value=1.5e-26 Score=228.58 Aligned_cols=154 Identities=13% Similarity=0.102 Sum_probs=103.9
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc----ccccCceEEEcCCCCCCCCCCH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP----SSFRKLSAYVPQHDACIPSLTV 128 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv 128 (605)
..-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+.+. ...++.++|++|++.+++.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 44799999999999999999999999999999999998 5 99999 776532 1235678999998766554321
Q ss_pred -HHHHHH---HHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHH-----HHHHhhCCCEEEEeCCCC
Q 007383 129 -YETFLF---SARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSI-----GLSLLHDPAVLLLDEPTS 199 (605)
Q Consensus 129 -~e~l~~---~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~i-----a~aL~~~P~illLDEPts 199 (605)
.+++.+ ....++.+ .+.++++++...+. .. ...+|||||||++| +++++.+|++++|||||+
T Consensus 86 ~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~-il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~ 156 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTL----KSEYDKAKEQNKIC-LF----EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLL 156 (218)
T ss_dssp TTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEE-EE----EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHH
T ss_pred ccchhhhhhcccccCCCc----HHHHHHHHhCCCcE-EE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHH
Confidence 111111 01111111 23456666654321 11 25789999999999 899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q 007383 200 GLDSRSAFNVMQTLKSISAS 219 (605)
Q Consensus 200 gLD~~~~~~i~~~L~~l~~~ 219 (605)
++|..+...+.+.|.+..++
T Consensus 157 ~~d~~~~~~i~~~l~~~~~~ 176 (218)
T 1z6g_A 157 TRNTENQEQIQKRMEQLNIE 176 (218)
T ss_dssp HTCCCCHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887643
No 79
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.86 E-value=4.8e-23 Score=212.39 Aligned_cols=186 Identities=15% Similarity=0.122 Sum_probs=128.1
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG-TILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G-~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
..+|+++++.+++|++++|+||||||||||++.|+|...+.+| .|.+.+.+.+...+++++.++.|+.. +++.++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~ 97 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDS 97 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccc
Confidence 4589999999999999999999999999999999999988878 77665444433334333434443322 123344
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---CCH-
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE-RRRVSIGLSLLHDPAVLLLDEPTS---G---LDS- 203 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe-rqRv~ia~aL~~~P~illLDEPts---g---LD~- 203 (605)
+.... + +.++.++.++++++..++. . +.. +.++|.+| +||+. |+++..+|+++++||||+ + +|.
T Consensus 98 l~~~~-~---~~~~~~~~~~~~l~~~~l~-i-~~~-~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~ 169 (296)
T 1cr0_A 98 LKREI-I---ENGKFDQWFDELFGNDTFH-L-YDS-FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER 169 (296)
T ss_dssp HHHHH-H---HHTHHHHHHHHHHSSSCEE-E-ECC-CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred cccCC-C---CHHHHHHHHHHHhccCCEE-E-ECC-CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence 43321 1 1223344455554433331 1 112 25789999 66666 999999999999999999 5 565
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCC-h--------------------HHHhcCCeEEEEeCCeE
Q 007383 204 RSAFNVMQTLKSISASRHRTVILSIHQPS-F--------------------KILSTIDRILLLSKGSV 250 (605)
Q Consensus 204 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~-~--------------------~i~~~~d~v~~l~~G~i 250 (605)
.....+++.|++++++.|+|||+++|+.+ . .+.+.||+|++|++|+.
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67788999999998877899999999962 1 47789999999998874
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=2.5e-23 Score=218.16 Aligned_cols=131 Identities=14% Similarity=0.170 Sum_probs=109.7
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC-CcccccCceEEEcCCCCCCCCCCHHHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI-KPSSFRKLSAYVPQHDACIPSLTVYETFL 133 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~-~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (605)
+++++|+.+++|++++|+||||||||||+|+|+|+++|++|.|.++|.+. .....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~---------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF---------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC----------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe----------------
Confidence 79999999999999999999999999999999999999999999998642 1111333444443
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007383 134 FSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTL 213 (605)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L 213 (605)
+ |||+||++||++|..+|++|++||||+ .++.+.|
T Consensus 224 ------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l 258 (330)
T 2pt7_A 224 ------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFY 258 (330)
T ss_dssp ------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHH
T ss_pred ------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHH
Confidence 1 899999999999999999999999998 2456778
Q ss_pred HHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 214 KSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 214 ~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
+.+. .++.|+|+++|+++ ..+.+||+++|.+|+
T Consensus 259 ~~~~-~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 259 NVLC-SGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHH-TTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred HHHh-cCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 8775 34558999999987 578899999998875
No 81
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.85 E-value=1.1e-21 Score=217.79 Aligned_cols=76 Identities=24% Similarity=0.399 Sum_probs=69.9
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 169 HNL-SGGERRRVSIGLSLLHDP--AVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 169 ~~L-SgGerqRv~ia~aL~~~P--~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |+|||++||+++ +...+|++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHHhCCEEEEE
Confidence 567 999999999999999999 99999999999999999999999999975 689999999986 45679999999
Q ss_pred eCC
Q 007383 246 SKG 248 (605)
Q Consensus 246 ~~G 248 (605)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 82
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=9.3e-21 Score=200.33 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCC
Q 007383 170 NLSGGERRRVSIGLSLL---------HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTID 240 (605)
Q Consensus 170 ~LSgGerqRv~ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d 240 (605)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + + .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-A-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-C-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-c-c---cCC
Confidence 79999999999999999 8999999999999999999999999998873 599999994 4 2 899
Q ss_pred eEEEEeCCeEEEecChhhH
Q 007383 241 RILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 241 ~v~~l~~G~iv~~g~~~~~ 259 (605)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
No 83
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=4e-20 Score=194.60 Aligned_cols=76 Identities=30% Similarity=0.444 Sum_probs=68.7
Q ss_pred cCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCe
Q 007383 168 AHNLSGGERR------RVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDR 241 (605)
Q Consensus 168 ~~~LSgGerq------Rv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~ 241 (605)
++.||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.++ |.|||++|||++ +.+.+|+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~--~~~~~d~ 322 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE--LKDAADH 322 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG--GGGGCSE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhCCE
Confidence 4889999999 667778888899999999999999999999999999998765 789999999964 6889999
Q ss_pred EEEEe
Q 007383 242 ILLLS 246 (605)
Q Consensus 242 v~~l~ 246 (605)
++.|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 84
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.83 E-value=6.6e-23 Score=216.14 Aligned_cols=191 Identities=19% Similarity=0.177 Sum_probs=140.5
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.++.+++++.+. .+..+|+++ +.+.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|+
T Consensus 45 ~i~~~~l~~~~~----------------tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 45 PLLRQVIDQPFI----------------LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp STTCCCCCSEEC----------------CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CeeecccceecC----------------CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 366777777772 245699999 999999999999999999999999999999999999999997
Q ss_pred eCC----------cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc--ccccccccCC
Q 007383 103 PIK----------PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA--HLASTRLAHN 170 (605)
Q Consensus 103 ~~~----------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~~ 170 (605)
+.. ...+++.+.+++|.+. +..+.+.-... ...+.+.....+-. ... .. +..
T Consensus 108 ~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~---------~~~~ae~~~~~~~~vl~~l-d~-~~~ 171 (347)
T 2obl_A 108 RGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT---------ATTIAEYFRDQGKNVLLMM-DS-VTR 171 (347)
T ss_dssp CHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH---------HHHHHHHHHTTTCEEEEEE-ET-HHH
T ss_pred cHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH---------HHHHHHHHHhccccHHHHH-hh-HHH
Confidence 521 0123455778877542 23333221110 00011111111110 001 22 478
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEeCCCChHHHhcCCeEEE
Q 007383 171 LSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISA-SRHR-----TVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 171 LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~~g~-----tii~~~H~~~~~i~~~~d~v~~ 244 (605)
+|+|| ||+++| +.+|++ |+|||+.....+.++++++.+ ++|. ||++++||++ ..++|++++
T Consensus 172 lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~ 238 (347)
T 2obl_A 172 YARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRS 238 (347)
T ss_dssp HHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHH
T ss_pred HHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEE
Confidence 99999 899999 688887 999999999999999999875 4577 8999999997 467999999
Q ss_pred EeCCeEEEecChhhH
Q 007383 245 LSKGSVVHHGTLASL 259 (605)
Q Consensus 245 l~~G~iv~~g~~~~~ 259 (605)
|.+|+++.+|++++.
T Consensus 239 i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 239 ILDGHIVLTRELAEE 253 (347)
T ss_dssp HCSEEEEBCHHHHTT
T ss_pred eeCcEEEEeCCHHHc
Confidence 999999999887665
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=2.7e-22 Score=201.43 Aligned_cols=176 Identities=10% Similarity=0.105 Sum_probs=113.0
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
+.+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~~ 77 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-------QRQRKVVILSQDR-FYKVLTAEQ 77 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-------GGGCSEEEEEGGG-GBCCCCHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-------ccCCceEEEeCCc-CccccCHhH
Confidence 5677999999999999999999999999999999999976 444443 3467799999985 677899999
Q ss_pred HHHHHHhcCCC--ChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 007383 131 TFLFSARLLVP--KTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFN 208 (605)
Q Consensus 131 ~l~~~~~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~ 208 (605)
++.+....... +.....+.+.+.++.+ .+..+.. +..+|+||+||+.+ ++++.+|+++++|||....|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~-~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~---- 149 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVE-VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE---- 149 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEE-ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCee-cccccccccCccCc-eEEecCCCEEEEeCccccccHH----
Confidence 99876543221 1111233444555543 3444455 48999999999988 5788899999999998888864
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCChHHHh-cCCeEEEEeCCeEEEecChhhHHHH
Q 007383 209 VMQTLKSISASRHRTVILSIHQPSFKILS-TIDRILLLSKGSVVHHGTLASLETF 262 (605)
Q Consensus 209 i~~~L~~l~~~~g~tii~~~H~~~~~i~~-~~d~v~~l~~G~iv~~g~~~~~~~~ 262 (605)
+.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.
T Consensus 150 ----l~~~---~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 150 ----IRDM---FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp ----HHTT---CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHH
T ss_pred ----HHHh---cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 2232 3679999999733 2333 34434 5564 45565443
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=5.8e-23 Score=213.62 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=101.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPK 142 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 142 (605)
+++|+++||+||||||||||+++|+|+++|..|. +.+++|+|++.+++. |++||+.+... .+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~g~~ 150 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR-KGFP 150 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-TTSG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh-cCCC
Confidence 7899999999999999999999999999987653 458999999998888 99999864321 2222
Q ss_pred hhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007383 143 TSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS 203 (605)
Q Consensus 143 ~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~ 203 (605)
.....+.+.+.++.++ ....+.. +..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 151 ~~~d~~~~~~~L~~l~-~~~~~~~-~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 151 ESYNRRALMRFVTSVK-SGSDYAC-APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp GGBCHHHHHHHHHHHH-TTCSCEE-EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hHHHHHHHHHHHHHhC-CCcccCC-cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 3333456778888887 4444455 479999999999999999999999999999999986
No 87
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=4.5e-21 Score=223.27 Aligned_cols=160 Identities=27% Similarity=0.356 Sum_probs=127.3
Q ss_pred HHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCCh-------hHHHHHHHH
Q 007383 81 TLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKT-------SQIDTIITV 152 (605)
Q Consensus 81 TLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~-------~~~~~~v~~ 152 (605)
|...+..++++|..|+|.++|+++.. +..+|+.|++.|.... ..... .+..++..+
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 45567778889999999999998631 2346778887775443 21110 011233456
Q ss_pred HHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC
Q 007383 153 LLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHDPA--VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH 229 (605)
Q Consensus 153 ~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~P~--illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H 229 (605)
.+..+||... .++. +.+|||||||||.||++|+.+|+ +|+|||||+|||+.....++++|+++++ .|.|||+++|
T Consensus 447 ~L~~vgL~~l~l~r~-~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtH 524 (916)
T 3pih_A 447 FLVDVGLEYLTLSRS-ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEH 524 (916)
T ss_dssp HHHTTTCTTCBTTSB-GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECC
T ss_pred HHHHcCCccccccCC-cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeC
Confidence 7888999765 4566 59999999999999999999887 9999999999999999999999999975 4899999999
Q ss_pred CCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 230 QPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 230 ~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
|++ ....+|++++| ++|++++.|+++++.
T Consensus 525 d~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 525 DEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred CHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 986 34569999999 899999999999874
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.82 E-value=1e-21 Score=232.18 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=122.3
Q ss_pred ceEEEEe-----EEEEEecCCCCccccccccCCCCCceeeeeeeEEEeC-------CeEEEEECCCCCcHHHHHHHHhCC
Q 007383 22 YKLTGSS-----ISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYP-------SQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 22 ~~l~~~~-----ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
..|+++| |++.+. +.+.+++|+++.+++ |++++|+||||||||||||+| |+
T Consensus 749 ~~l~i~~~rHP~l~~~~~----------------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF----------------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEEECCCC----------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred ceEEEEeccccEEEEEec----------------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 3599999 887762 235699999999987 999999999999999999999 88
Q ss_pred CCCCccEEEECCeeCCcccccCceE-EEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCccccccccc
Q 007383 90 TSPTNGTILLNSSPIKPSSFRKLSA-YVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLA 168 (605)
Q Consensus 90 ~~~~~G~I~~~g~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~ 168 (605)
+.+ ..++| ||||+.. .+||.|++.. .+|+.+..... .
T Consensus 812 ~~~-----------------~aqiG~~Vpq~~~---~l~v~d~I~~---------------------rig~~d~~~~~-~ 849 (1022)
T 2o8b_B 812 LAV-----------------MAQMGCYVPAEVC---RLTPIDRVFT---------------------RLGASDRIMSG-E 849 (1022)
T ss_dssp HHH-----------------HHTTTCCEESSEE---EECCCSBEEE---------------------ECC----------
T ss_pred HHH-----------------HhheeEEeccCcC---CCCHHHHHHH---------------------HcCCHHHHhhc-h
Confidence 753 12344 9999763 4566554410 11222222222 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSA-FNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~-~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
..+|++++ ++++|++++++|+++|||||++|+|+... ..+.++|++++++.|.++|++||+.+. +...+|++.++ +
T Consensus 850 stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~-~ 926 (1022)
T 2o8b_B 850 STFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVR-L 926 (1022)
T ss_dssp CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEE-E
T ss_pred hhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceee-c
Confidence 55677666 49999999999999999999999999985 557899999986558899999999874 67789998887 4
Q ss_pred CeEE--EecChhh
Q 007383 248 GSVV--HHGTLAS 258 (605)
Q Consensus 248 G~iv--~~g~~~~ 258 (605)
|++. +.|++++
T Consensus 927 g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 927 GHMACMVENECED 939 (1022)
T ss_dssp EEEEEC-------
T ss_pred CeEEEEEecCccc
Confidence 8887 5565543
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=1.7e-23 Score=233.02 Aligned_cols=169 Identities=9% Similarity=-0.009 Sum_probs=123.2
Q ss_pred CceeeeeeeE-EEeCCeEEEEECCCCCcHHHHHHH--HhCCCCCCccEEEECCeeCCc--ccccCceEEEcCCCCCCCCC
Q 007383 52 PTYILKNVSL-TAYPSQILAIVGPSGAGKSTLLDI--LSARTSPTNGTILLNSSPIKP--SSFRKLSAYVPQHDACIPSL 126 (605)
Q Consensus 52 ~~~iL~~vs~-~i~~Ge~~ailG~nGaGKTTLL~~--l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~l 126 (605)
...+|+|+|+ .+++||+++|+||||||||||+++ ++|+.+|.+|.|+++|++... ...++.+||++|+....++
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~- 102 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK- 102 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS-
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc-
Confidence 4679999999 999999999999999999999999 789999999999999987421 2234568999997542211
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-----CC
Q 007383 127 TVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS-----GL 201 (605)
Q Consensus 127 Tv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPts-----gL 201 (605)
+.+ ..... .. ...++++.+++.+..++. ++.|||| +|++++|||||+ +|
T Consensus 103 -----l~~-~~~~~-~~-----~~~~~l~~~~l~~~~~~~-~~~LS~g-------------~~~~lilDe~t~~~~~~~l 156 (525)
T 1tf7_A 103 -----LFI-LDASP-DP-----EGQEVVGGFDLSALIERI-NYAIQKY-------------RARRVSIDSVTSVFQQYDA 156 (525)
T ss_dssp -----EEE-EECCC-CS-----SCCSCCSSHHHHHHHHHH-HHHHHHH-------------TCSEEEEECSTTTSTTTCC
T ss_pred -----EEE-EecCc-cc-----chhhhhcccCHHHHHHHH-HHHHHHc-------------CCCEEEECCHHHHHHhcCC
Confidence 100 00000 00 011223333444434333 3566666 588999999998 56
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChH--------HHhcCCeEEEEeCC
Q 007383 202 DSRSAFNVMQTLKSISASRHRTVILSIHQPSFK--------ILSTIDRILLLSKG 248 (605)
Q Consensus 202 D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~--------i~~~~d~v~~l~~G 248 (605)
|+..+..+.+++++++++ |+|||+++|+++.. +..+||+|++|++|
T Consensus 157 D~~~~~~l~~ll~~l~~~-g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 157 SSVVRRELFRLVARLKQI-GATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHC-CCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 999999999999999864 89999999999841 24559999999984
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=2e-20 Score=208.09 Aligned_cols=155 Identities=13% Similarity=0.117 Sum_probs=121.0
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC
Q 007383 60 SLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL 139 (605)
Q Consensus 60 s~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 139 (605)
++.+++|++++|+||||||||||++.++|..++. |+ +.+.+++|++. .++.++.. + .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~--------------~vi~~~~ee~~----~~l~~~~~---~-~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE--------------RAILFAYEESR----AQLLRNAY---S-W 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC--------------CEEEEESSSCH----HHHHHHHH---T-T
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC--------------CEEEEEEeCCH----HHHHHHHH---H-c
Confidence 5689999999999999999999999999998763 43 12456666541 12222221 1 1
Q ss_pred CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHHHHHH
Q 007383 140 VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSR-----SAFNVMQTLK 214 (605)
Q Consensus 140 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~-----~~~~i~~~L~ 214 (605)
+.+ +++ +...|+....+.. +..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.++++
T Consensus 332 g~~-------~~~-~~~~g~~~~~~~~-p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~ 401 (525)
T 1tf7_A 332 GMD-------FEE-MERQNLLKIVCAY-PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTG 401 (525)
T ss_dssp SCC-------HHH-HHHTTSEEECCCC-GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCC-------HHH-HHhCCCEEEEEec-cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHH
Confidence 211 112 2345666666665 5899999999999999999999999999 99999999 9999999999
Q ss_pred HHHhcCCcEEEEEeCCC----------ChHHHhcCCeEEEEeCCe
Q 007383 215 SISASRHRTVILSIHQP----------SFKILSTIDRILLLSKGS 249 (605)
Q Consensus 215 ~l~~~~g~tii~~~H~~----------~~~i~~~~d~v~~l~~G~ 249 (605)
.+++ .|.|||+++|+. . .+..++|++++|++|+
T Consensus 402 ~l~~-~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 402 YAKQ-EEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYVE 444 (525)
T ss_dssp HHHH-TTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEEE
T ss_pred HHHh-CCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEEE
Confidence 9875 589999999998 4 4677899999999886
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.80 E-value=5.4e-20 Score=215.08 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=114.5
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHH--------hCCCCCCccEEEECCeeCCcccccCceEEEcCCCCC
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDIL--------SARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDAC 122 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l--------~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l 122 (605)
+.+.+++|+++.+++|++++|+||||||||||||++ .|..-|.++.. ++.+ +.
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~---------------~~~~---d~- 707 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE---------------VSIV---DC- 707 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------------EECC---SE-
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------------chHH---HH-
Confidence 346799999999999999999999999999999999 45433322111 1100 00
Q ss_pred CCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCC
Q 007383 123 IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSL--LHDPAVLLLDEPTSG 200 (605)
Q Consensus 123 ~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~illLDEPtsg 200 (605)
++..+|+. +.. .+++|+|++++..+|+++ +++|+++||||||+|
T Consensus 708 ------------------------------i~~~ig~~---d~l-~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 708 ------------------------------ILARVGAG---DSQ-LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp ------------------------------EEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred ------------------------------HHHhcCch---hhH-HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 11112222 122 367888888888888888 999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 201 LDSRSAFNV-MQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 201 LD~~~~~~i-~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
||+.....+ ..+++.++++.|.++|++||+.+ +.+++|++..+.+|++...++.+++
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 999999888 67778887656899999999964 6789999999999999988877654
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.80 E-value=1.2e-19 Score=210.16 Aligned_cols=133 Identities=29% Similarity=0.411 Sum_probs=110.3
Q ss_pred CCCCCHHHHHHHHHhc-CCCCh--------hHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhhCC--C
Q 007383 123 IPSLTVYETFLFSARL-LVPKT--------SQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHDP--A 190 (605)
Q Consensus 123 ~~~lTv~e~l~~~~~~-~~~~~--------~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~P--~ 190 (605)
+..+||.|++.|...+ .+... ++..+++ +.++.+||... .++. +.+|||||||||.||++|..+| +
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~-~~tLSGGEkQRV~LA~aL~~~~~~~ 526 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRS-AGTLSGGEAQRIRLATQIGSRLTGV 526 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSB-GGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCc-cccCCHHHHHHHHHHHHHhhCCCCC
Confidence 3468999999997655 22110 2344555 45899999865 5666 4999999999999999999985 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHH
Q 007383 191 VLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLE 260 (605)
Q Consensus 191 illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~ 260 (605)
+|+|||||+|||+.....+++.|+++++ .|.|||+++|+++ ..+.+|+|++| ++|++++.|+++++.
T Consensus 527 llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 527 LYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999975 5899999999986 35679999999 789999999998763
No 93
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.79 E-value=1.1e-19 Score=209.88 Aligned_cols=176 Identities=17% Similarity=0.249 Sum_probs=128.8
Q ss_pred CCCCcHHHHHHHHhC---------CCCCCccEEEECCeeCCc---ccccCceEEEcCCC---CCCC----CCCHHHHHHH
Q 007383 74 PSGAGKSTLLDILSA---------RTSPTNGTILLNSSPIKP---SSFRKLSAYVPQHD---ACIP----SLTVYETFLF 134 (605)
Q Consensus 74 ~nGaGKTTLL~~l~g---------~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~---~l~~----~lTv~e~l~~ 134 (605)
.+..||++|.+.+.. ++.+.+|+|.++|+++.. ....+..+++.|.+ .... .++- ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 356799999998875 455678999999987632 12222233333221 0000 0010 11111
Q ss_pred HHhcCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHH
Q 007383 135 SARLLVPKTSQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHDP--AVLLLDEPTSGLDSRSAFNVMQ 211 (605)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~P--~illLDEPtsgLD~~~~~~i~~ 211 (605)
+..+ .++..++++ .++.+||... .++. +.+|||||||||.||++|..+| ++|+|||||+|||+.....+.+
T Consensus 349 ~~~i----~~ei~~rl~-~L~~vGL~~l~l~r~-~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~ 422 (842)
T 2vf7_A 349 LQRM----AADLVKRLD-VLLHLGLGYLGLDRS-TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS 422 (842)
T ss_dssp HHHH----HHHHHHHHH-HHHHTTCTTSBTTCB-GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHH----HHHHHHHHH-HHHhCCCCcCCccCC-cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH
Confidence 1111 134556666 6889999865 5666 4999999999999999999999 5999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhH
Q 007383 212 TLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASL 259 (605)
Q Consensus 212 ~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~ 259 (605)
+|+++++ .|.|||+++|+++ +.+.+|+|++| ++|++++.|+++++
T Consensus 423 ~l~~L~~-~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 423 ALENLKR-GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp HHHHHHT-TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred HHHHHHH-cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 9999975 5889999999985 56789999999 79999999999876
No 94
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=8.8e-22 Score=203.92 Aligned_cols=158 Identities=21% Similarity=0.192 Sum_probs=88.9
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHH
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSAR-TSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVY 129 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~-~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (605)
+.+.+++++++++ +|+||||||||||+|.|+|. ..|++| |.++|.++....-.+.+++++|++.....+|+.
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~ 81 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVV 81 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchh
Confidence 4567999999998 99999999999999999998 788999 888888764322235689999988888889999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHH
Q 007383 130 ETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS-GLDSRSAFN 208 (605)
Q Consensus 130 e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPts-gLD~~~~~~ 208 (605)
|+..++..... .+..+..++.+ .+..+.. .+++|||||||+.+||+++ ++++||||+ |||+...
T Consensus 82 Dt~g~~~~~~~--~e~~~~l~~~l------~~~~~~~-~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~-- 146 (301)
T 2qnr_A 82 DTPGYGDAINC--RDCFKTIISYI------DEQFERY-LHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV-- 146 (301)
T ss_dssp EEC-------------CTTHHHHH------HHHHHHH-HHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH--
T ss_pred hhhhhhhhcCc--HHHHHHHHHHH------HHHHHHH-HHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH--
Confidence 98877543210 00111112221 1223344 4899999999999988875 999999998 5999873
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 209 VMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 209 i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
+.+++++++.+.++|++.||..
T Consensus 147 --~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 147 --AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp --HHHHHHTTTSCEEEEECCGGGS
T ss_pred --HHHHHHHhcCCEEEEEEeCCCC
Confidence 6667776545789999999975
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.78 E-value=9.4e-21 Score=189.08 Aligned_cols=163 Identities=10% Similarity=-0.009 Sum_probs=106.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHh--CCCCCCccEEEECCeeCCc--ccccCceEEEcCCCCCCCCCCHHHHHHHHH
Q 007383 61 LTAYPSQILAIVGPSGAGKSTLLDILS--ARTSPTNGTILLNSSPIKP--SSFRKLSAYVPQHDACIPSLTVYETFLFSA 136 (605)
Q Consensus 61 ~~i~~Ge~~ailG~nGaGKTTLL~~l~--g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 136 (605)
+-+++|++++|+||||||||||+++|+ |..++.+|.+.+++..... ....+.+++++|+....+.+++.++.....
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 379999999999999999999999999 6656677888887765321 122244677777654444444444332111
Q ss_pred hcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----HHHHHHHHH
Q 007383 137 RLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLD-----SRSAFNVMQ 211 (605)
Q Consensus 137 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD-----~~~~~~i~~ 211 (605)
.. ...... .. ....+.++..+...+..-..+|+++++||||++|| +..+..+.+
T Consensus 105 ~~-------~~~~~~-------------~~-~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~ 163 (251)
T 2ehv_A 105 GL-------PSEEKF-------------VL-EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLK 163 (251)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHH
T ss_pred cc-------ccccce-------------ec-cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHH
Confidence 00 000000 00 12233444444444444468999999999999998 677777999
Q ss_pred HHHHHHhcCCcEEEEEeCCCChHH---------HhcC-CeEEEEe
Q 007383 212 TLKSISASRHRTVILSIHQPSFKI---------LSTI-DRILLLS 246 (605)
Q Consensus 212 ~L~~l~~~~g~tii~~~H~~~~~i---------~~~~-d~v~~l~ 246 (605)
+++.++++ |+|||+++|+.+. + ..++ |++++|+
T Consensus 164 l~~~l~~~-g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 164 LNTILLEM-GVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHH-CCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHC-CCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 99998764 8999999999874 5 5788 9999996
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.78 E-value=1.7e-20 Score=184.80 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=98.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-------CccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHH
Q 007383 61 LTAYPSQILAIVGPSGAGKSTLLDILSARTSP-------TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFL 133 (605)
Q Consensus 61 ~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-------~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (605)
+-+++||+++|+||||||||||+++|+|...+ ..|.+++++++.. ..+.+++++|+..+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 57999999999999999999999999996544 3346666654321 01223444444333322 3333322
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCCCCCHH-
Q 007383 134 FSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE-RRRVSIGLSLLH-------DPAVLLLDEPTSGLDSR- 204 (605)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe-rqRv~ia~aL~~-------~P~illLDEPtsgLD~~- 204 (605)
+. ...++++ ++++..+.+++. +|+++++||||+++|+.
T Consensus 96 ~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~ 142 (231)
T 4a74_A 96 VA---------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEY 142 (231)
T ss_dssp EE---------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHS
T ss_pred EE---------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcccc
Confidence 11 1223332 233455555554 99999999999999984
Q ss_pred ------H-----HHHHHHHHHHHHhcCCcEEEEEeCCCCh---HHHhcCCeEEEEeCC
Q 007383 205 ------S-----AFNVMQTLKSISASRHRTVILSIHQPSF---KILSTIDRILLLSKG 248 (605)
Q Consensus 205 ------~-----~~~i~~~L~~l~~~~g~tii~~~H~~~~---~i~~~~d~v~~l~~G 248 (605)
. ..++++.|++++++.|.|||+++|+.+. .+...+|+++.|++|
T Consensus 143 ~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 143 IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 2 2378888888887778999999994431 267889999999875
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.77 E-value=2.6e-20 Score=188.91 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=100.6
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT-NGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
.+|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~-~~~~~~~~v~q~------------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY-VFKHKKSIVNQR------------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEE-------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee-ecCCcceeeeHH-------------
Confidence 4899999 9999999999999999999999999999987 9999999876531 011112222221
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~ 212 (605)
.+|++. ..+ |++||++|..+|+++++|||| |+.+...++
T Consensus 79 -----------------------~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l-- 117 (261)
T 2eyu_A 79 -----------------------EVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL-- 117 (261)
T ss_dssp -----------------------EBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH--
T ss_pred -----------------------HhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH--
Confidence 122221 122 899999999999999999999 998866544
Q ss_pred HHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 213 L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
+. +. .|.+|++++|+.+ +.+.+||++.|..
T Consensus 118 -~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 118 -RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp -HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred -HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 33 33 4889999999986 5688999988754
No 98
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=9.2e-19 Score=203.46 Aligned_cols=133 Identities=26% Similarity=0.385 Sum_probs=109.9
Q ss_pred CCCCCHHHHHHHHHhcCCCCh----------hHHHHHHHHHHHHcCCccc-ccccccCCCCHHHHHHHHHHHHHhhC--C
Q 007383 123 IPSLTVYETFLFSARLLVPKT----------SQIDTIITVLLTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLLHD--P 189 (605)
Q Consensus 123 ~~~lTv~e~l~~~~~~~~~~~----------~~~~~~v~~~l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~~~--P 189 (605)
+..+||.|.+.|...+ ..+. ++..+++ +.++.+||... .++. +.+|||||||||.||++|..+ |
T Consensus 466 ~~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~-~~tLSGGEkQRV~LA~aL~~~~~~ 542 (993)
T 2ygr_A 466 VCELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRA-AATLSGGEAQRIRLATQIGSGLVG 542 (993)
T ss_dssp SSHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCB-GGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCC-cccCCHHHHHHHHHHHHHhhCCCC
Confidence 4568999999984333 2222 2334455 35788999865 5666 499999999999999999998 5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE------eCCeEEEecChhhHHH
Q 007383 190 AVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLL------SKGSVVHHGTLASLET 261 (605)
Q Consensus 190 ~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l------~~G~iv~~g~~~~~~~ 261 (605)
++|+|||||+|||+.....+++.|+++++ .|.|||+++||++ ..+.+|+|++| ++|++++.|+++++.+
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 89999999999999999999999999975 5899999999986 35689999999 7899999999988743
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.76 E-value=1.4e-20 Score=194.98 Aligned_cols=150 Identities=12% Similarity=0.120 Sum_probs=110.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc-------cc--cCceEEEcCCCCCCCCCCHHHHHHHH
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS-------SF--RKLSAYVPQHDACIPSLTVYETFLFS 135 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~-------~~--~~~i~yv~Q~~~l~~~lTv~e~l~~~ 135 (605)
+|++++|+||||||||||++.|+|+++|++|+|.++|.++... .+ +..++|++|++.+.|.+||+|++.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999886421 12 34689999999888889999999865
Q ss_pred HhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007383 136 ARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKS 215 (605)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 215 (605)
... .. -..+++..|+.+..+ +.++..++||++|||+++.+|+.++| .||+.+..++++.+++
T Consensus 181 ~~~-~~--------d~~llDt~G~~~~~~----~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~ 242 (304)
T 1rj9_A 181 KAR-GY--------DLLFVDTAGRLHTKH----NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKK 242 (304)
T ss_dssp HHH-TC--------SEEEECCCCCCTTCH----HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHH
T ss_pred HhC-CC--------CEEEecCCCCCCchH----HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHH
Confidence 321 00 001223344433222 22345558999999999999994444 4555555567777777
Q ss_pred HHhcCCcEEEEEeCCCC
Q 007383 216 ISASRHRTVILSIHQPS 232 (605)
Q Consensus 216 l~~~~g~tii~~~H~~~ 232 (605)
+.++.|.|+|++||+..
T Consensus 243 ~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 243 FHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHCCSEEEEECTTS
T ss_pred HHHHcCCcEEEEECCcc
Confidence 76655889999999854
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.75 E-value=2.4e-19 Score=209.07 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=101.5
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
.+.|++|+|+++++|++++|+||||||||||||++++.... ..|. .+... -+.+..-+.++..+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vpa~-----~~~i~~~d~i~~~i---- 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVPAE-----EATIGIVDGIFTRM---- 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBSSS-----EEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cccch-----hhhhhHHHHHHHhC----
Confidence 56799999999999999999999999999999999754211 1110 00000 01111111122111
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVM 210 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 210 (605)
|+.+..... .+.+|+||+|++.|+++ +.+|+++||||||+|||+.....+.
T Consensus 724 ---------------------------g~~d~l~~~-~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~ 774 (918)
T 3thx_B 724 ---------------------------GAADNIYKG-RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIA 774 (918)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHH
T ss_pred ---------------------------ChHHHHHHh-HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 222222223 37899999999999998 8999999999999999999999997
Q ss_pred -HHHHHHHhcCCcEEEEEeCCCChHHHhcCCeE
Q 007383 211 -QTLKSISASRHRTVILSIHQPSFKILSTIDRI 242 (605)
Q Consensus 211 -~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v 242 (605)
.+++.++++.|.|||++||+++ +.+++|+.
T Consensus 775 ~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 775 YATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 7888887656899999999975 45666654
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.75 E-value=1.3e-21 Score=191.20 Aligned_cols=147 Identities=15% Similarity=0.094 Sum_probs=117.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCC--CCCCHHHHHHHHHhcCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACI--PSLTVYETFLFSARLLV 140 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~~~ 140 (605)
.++|++++|+||||||||||+++|+|+++| .++|++|++.++ ..+|+.++..+.. .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~---~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------------RVALLPMDHYYKDLGHLPLEERLRVNY---D 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT---T
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------CeEEEecCccccCcccccHHHhcCCCC---C
Confidence 478999999999999999999999998754 489999998776 5689998865432 1
Q ss_pred CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHH
Q 007383 141 PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGER----RRVSIGLSLLHDPAVLLLDEPTSG-------LDSRSAFNV 209 (605)
Q Consensus 141 ~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGer----qRv~ia~aL~~~P~illLDEPtsg-------LD~~~~~~i 209 (605)
.+.....+++.+.++.+++.+..+.+ +..+|+||+ ||+++|++++.+|.++++||||++ ||+.....+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~ 139 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEMP-VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERF 139 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEEC-CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHH
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCCC-cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHH
Confidence 12222345677778888887666655 478999964 788999999999999999999999 999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCC
Q 007383 210 MQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 210 ~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
.+.+++..++.|+|++.++|+..
T Consensus 140 ~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 140 IRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 99998865556889999999743
No 102
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=3.7e-18 Score=158.17 Aligned_cols=80 Identities=29% Similarity=0.426 Sum_probs=71.9
Q ss_pred cCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCe
Q 007383 168 AHNLSGGERRRVSIG------LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDR 241 (605)
Q Consensus 168 ~~~LSgGerqRv~ia------~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~ 241 (605)
+.+||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||++. +.+.+|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~--~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE--LKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG--GGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH--HHHhCCE
Confidence 589999999999886 8999999999999999999999999999999998764 789999999983 6789999
Q ss_pred EEEE--eCCeE
Q 007383 242 ILLL--SKGSV 250 (605)
Q Consensus 242 v~~l--~~G~i 250 (605)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.73 E-value=2.8e-19 Score=205.62 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=103.0
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-PTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
.+.+++|+|++ |++++|+||||||||||||+|+|+.. +..|.+. + ..+..+++++| +++.+++.|
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p----a~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P----AEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S----SSEEEECCCSE---EEEECCC--
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e----hhccceeeHHH---hhccCCHHH
Confidence 46799999999 99999999999999999999999874 5677642 1 11345777766 455566655
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSL--LHDPAVLLLDEP---TSGLDSRS 205 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~illLDEP---tsgLD~~~ 205 (605)
++. .++|+|+++++.+++++ +++|+++||||| |++||..+
T Consensus 631 ~l~-----------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~ 675 (765)
T 1ewq_A 631 DLA-----------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVA 675 (765)
T ss_dssp ---------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHH
T ss_pred HHH-----------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHH
Confidence 432 35789999999999999 999999999999 99999887
Q ss_pred H-HHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcC
Q 007383 206 A-FNVMQTLKSISASRHRTVILSIHQPSFKILSTI 239 (605)
Q Consensus 206 ~-~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 239 (605)
. ..+++.|++ .|.|+|++||+.+ ..+++
T Consensus 676 ~~~~i~~~L~~----~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 676 IATAVAEALHE----RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp HHHHHHHHHHH----HTCEEEEECCCHH--HHTCC
T ss_pred HHHHHHHHHHh----CCCEEEEEeCCHH--HHHhh
Confidence 5 578888766 2689999999974 45554
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.73 E-value=9.2e-21 Score=214.06 Aligned_cols=168 Identities=16% Similarity=0.243 Sum_probs=114.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCeeCC------cccccCceEEEcCCCCCCCCCCHHHHHH
Q 007383 61 LTAYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLNSSPIK------PSSFRKLSAYVPQHDACIPSLTVYETFL 133 (605)
Q Consensus 61 ~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~g~~~~------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (605)
++++. +||+|||||||||||++|+|+..| ++|.|+++|.++. ...+++.+||++|+..+++.+||+|++.
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~ 119 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN 119 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH
Confidence 44544 999999999999999999999988 8999999998852 2356788999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHH
Q 007383 134 FSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEP------TSGLDSRSAF 207 (605)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEP------tsgLD~~~~~ 207 (605)
+........ ..++. ++++.++.+...+|+++++||| |+|||+..+.
T Consensus 120 ~~~~~~~~~-------------~~~~s---------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 120 KAQNAIAGE-------------GMGIS---------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp HHHHHHHCS-------------SSCCC---------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred HHHHHhcCC-------------ccccc---------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 764321000 00111 0111122222358999999999 9999999999
Q ss_pred HHHHHHHHHH-hcCCcEEEEEeCCCCh------HHHhc-----CCeEEEEeCCeEEEecChhhH
Q 007383 208 NVMQTLKSIS-ASRHRTVILSIHQPSF------KILST-----IDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 208 ~i~~~L~~l~-~~~g~tii~~~H~~~~------~i~~~-----~d~v~~l~~G~iv~~g~~~~~ 259 (605)
++.++++++. +..+.++++++|+.+. .+.+. ...|.++.++.++..|+.+++
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHH
Confidence 9999999964 4457788999999762 12221 245788888888877765544
No 105
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.73 E-value=6.4e-18 Score=183.38 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE
Q 007383 169 HNLSGGERRRVSIGLSLL----HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL 244 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~ 244 (605)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+ .+.++|++||++ ...+.+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCH--HHHHhCCEEEE
Confidence 459999999999999999 58999999999999999999999999999864 378999999995 46788999999
Q ss_pred Ee
Q 007383 245 LS 246 (605)
Q Consensus 245 l~ 246 (605)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.73 E-value=1.8e-19 Score=177.31 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=116.1
Q ss_pred ceeeeeeeE-EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccC---ceEEEcCCCCCCCCCCH
Q 007383 53 TYILKNVSL-TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRK---LSAYVPQHDACIPSLTV 128 (605)
Q Consensus 53 ~~iL~~vs~-~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~---~i~yv~Q~~~l~~~lTv 128 (605)
...|+++.+ .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+......++ ..++.+|+.... .+++
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 457888885 89999999999999999999999999888777777777554432221111 122222211000 0000
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--CHH
Q 007383 129 YETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPA--VLLLDEPTSGL--DSR 204 (605)
Q Consensus 129 ~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~--illLDEPtsgL--D~~ 204 (605)
... ....++ . .......|.+|+++...+.....+|+ ++++||||+++ |+.
T Consensus 88 ----------~~~-----------~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~ 141 (235)
T 2w0m_A 88 ----------IDA-----------LMKEKE-D----QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPA 141 (235)
T ss_dssp ----------EEC-----------CC-----C----TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGG
T ss_pred ----------Eec-----------cccccC-c----eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHH
Confidence 000 000001 0 01113459999998888888888999 99999999887 999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCC-------hHHHhcCCeEEEEeCC
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPS-------FKILSTIDRILLLSKG 248 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~-------~~i~~~~d~v~~l~~G 248 (605)
...++++.|++++++.|.|||+++|+.+ ..+.+++|++++|++.
T Consensus 142 ~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 142 MARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999999999998777999999999983 2378899999999854
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.72 E-value=1.3e-19 Score=191.39 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=108.6
Q ss_pred eeeeee-eEEEeCCeEEEEECCCCCcHHHHHHHHhCCC--CCCc----cE-EEECCeeCCcccccCceEEEcCCCCCCCC
Q 007383 54 YILKNV-SLTAYPSQILAIVGPSGAGKSTLLDILSART--SPTN----GT-ILLNSSPIKPSSFRKLSAYVPQHDACIPS 125 (605)
Q Consensus 54 ~iL~~v-s~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~--~~~~----G~-I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 125 (605)
..|+++ ++.+++|++++|+||||||||||++.+++.. +|++ |+ |++++++.. .++++++++|+..+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 356665 6899999999999999999999999999998 5655 67 888886531 13456677776654433
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCC
Q 007383 126 LTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL-------HDPAVLLLDEPT 198 (605)
Q Consensus 126 lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~-------~~P~illLDEPt 198 (605)
++.||+.+... .-|.+++|++.++++++ .+|+++++||||
T Consensus 195 -~v~~ni~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 195 -EVLKHIYVARA--------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp -HHGGGEEEEEC--------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred -HHhhCEEEEec--------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 44444332110 01345566666666665 689999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecC
Q 007383 199 SGLDSRS------------AFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 199 sgLD~~~------------~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
+++|+.. ..++++.|++++++.|+|||+++|... .....++.......|+++.++.
T Consensus 242 a~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 242 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred HhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 9999852 467778888888777899999999876 3444455556666676654443
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.71 E-value=7.2e-19 Score=203.24 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=108.3
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (605)
.+.+++|+|++ ++|++++|+||||||||||||+|+|+... ..| ..+... +..++++.| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSSS--EEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccchh--cccceeHHH---HHhhCCHHH
Confidence 45799999999 99999999999999999999999997432 223 111111 123555544 455556655
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNV- 209 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i- 209 (605)
++... .+.+|+|++ +++.+...+++|+++|||||++|+|+.....+
T Consensus 662 ~l~~~--------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~ 708 (800)
T 1wb9_A 662 DLASG--------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLA 708 (800)
T ss_dssp ----------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHH
T ss_pred HHHhh--------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHH
Confidence 54321 134566665 45555567899999999999999999888776
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEec
Q 007383 210 MQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHG 254 (605)
Q Consensus 210 ~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g 254 (605)
.++++.++++.|.++|++||+.+ +.+++|++..+.+|++....
T Consensus 709 ~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 709 WACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEE
Confidence 78888887645889999999985 45788887667777665543
No 109
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.69 E-value=3.2e-17 Score=167.43 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=108.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LV 140 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~ 140 (605)
-+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..++... .+.+.+. .+ ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~---~~~v~~~~~e~~~~---~~~~r~~---~~g~~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP---TGPVIYLPAEDPPT---AIHHRLH---ALGAH 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC---CCCEEEEESSSCHH---HHHHHHH---HHHTT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC---CccEEEEECCCCHH---HHHHHHH---HHHhh
Confidence 488999999999999999999999998654 46653 3443311 24577877655320 1112211 11 11
Q ss_pred CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HHHHHHHHH
Q 007383 141 PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS--GLDSRSA---FNVMQTLKS 215 (605)
Q Consensus 141 ~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPts--gLD~~~~---~~i~~~L~~ 215 (605)
.. ....+++++.+++.+..+.. +..||+||++++ ++++.+|+++++||||+ ++|.... .++++.|++
T Consensus 94 ~~----~~~~~~~~~~l~l~~~~~~~-~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~ 165 (279)
T 1nlf_A 94 LS----AEERQAVADGLLIQPLIGSL-PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 165 (279)
T ss_dssp SC----HHHHHHHHHHEEECCCTTSC-CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred cC----hhhhhhccCceEEeecCCCC-cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence 11 23356677888887776666 489999998875 68889999999999999 9998544 888999999
Q ss_pred HHhcCCcEEEEEeCCCC
Q 007383 216 ISASRHRTVILSIHQPS 232 (605)
Q Consensus 216 l~~~~g~tii~~~H~~~ 232 (605)
++++.|+|||+++|+..
T Consensus 166 l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHCCEEEEEEEC--
T ss_pred HHHHcCCEEEEEecCCC
Confidence 98767899999999975
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.67 E-value=3.8e-19 Score=172.66 Aligned_cols=173 Identities=18% Similarity=0.159 Sum_probs=99.9
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC-----CCCccEE
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART-----SPTNGTI 97 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~-----~~~~G~I 97 (605)
.|+++|+++.|. ..++++ +.+++|+.++|+|+||||||||+|.|+|.. .|+.|.+
T Consensus 3 ~l~~~~~~~~~~------------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~ 62 (210)
T 1pui_A 3 NLNYQQTHFVMS------------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62 (210)
T ss_dssp --------CEEE------------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------
T ss_pred chhhhhhhheee------------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccc
Confidence 478999999882 246777 889999999999999999999999999998 6777876
Q ss_pred EECCee-CC-cccccCceEEEcCCCCCCCCCC---HHHHHHHHHh---c-------CC--CChhHHHHHHHHHHHHcCCc
Q 007383 98 LLNSSP-IK-PSSFRKLSAYVPQHDACIPSLT---VYETFLFSAR---L-------LV--PKTSQIDTIITVLLTELRLA 160 (605)
Q Consensus 98 ~~~g~~-~~-~~~~~~~i~yv~Q~~~l~~~lT---v~e~l~~~~~---~-------~~--~~~~~~~~~v~~~l~~l~L~ 160 (605)
...+.- .. ...+....|+..++ .+.-. .+..+..... . .. ......++.+.+.++..++.
T Consensus 63 ~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~ 139 (210)
T 1pui_A 63 QLINLFEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA 139 (210)
T ss_dssp CCEEEEEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC
T ss_pred eeeEEEEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCC
Confidence 542210 00 00000001111000 00000 1111211111 0 00 01112233455666777775
Q ss_pred cc-ccccccCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007383 161 HL-ASTRLAHNLSGGERRR-VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISAS 219 (605)
Q Consensus 161 ~~-~~~~~~~~LSgGerqR-v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~ 219 (605)
.. ..++. ..+|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.++
T Consensus 140 ~~~v~nK~-D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 140 VLVLLTKA-DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEEEECG-GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEEecc-cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 43 24553 7899999999 89999999999999999999999999999999999998754
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.67 E-value=1.2e-19 Score=175.14 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=104.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-ccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCCCh
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-SSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVPKT 143 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~ 143 (605)
|++++|+||||||||||+++|+|+++ ++| |.++|.+... ..+++.+||++|+. ... ++++ ++. ...+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~~~~~ 70 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGLEPPP 70 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCCCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccccCCc
Confidence 78999999999999999999999999 899 9999987642 34577899999975 111 1111 111 10000
Q ss_pred hHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHH
Q 007383 144 SQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV-SIGL---SLLHDPAVLLLDE--PTSGLDSRSAFNVMQTLKSIS 217 (605)
Q Consensus 144 ~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv-~ia~---aL~~~P~illLDE--PtsgLD~~~~~~i~~~L~~l~ 217 (605)
. .-.+...+. ...+|+|||+++ ++++ |++.+|+++|+|| |+..+|......+.++++
T Consensus 71 ~-------------~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~--- 133 (189)
T 2i3b_A 71 G-------------KRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS--- 133 (189)
T ss_dssp S-------------SCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH---
T ss_pred c-------------ccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh---
Confidence 0 000111222 357999999988 4444 5789999999999 899999976665555554
Q ss_pred hcCCcEEEE----EeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 218 ASRHRTVIL----SIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 218 ~~~g~tii~----~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
. ..++|+ ++|+.+ ..+.|+|..+.+|+++..
T Consensus 134 -~-~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 -T-PGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp -C-SSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred -C-CCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 3 234443 238864 245677777778887754
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.66 E-value=1.4e-17 Score=176.06 Aligned_cols=127 Identities=24% Similarity=0.321 Sum_probs=91.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPT-NGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLV 140 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~ 140 (605)
...+|++++|+|||||||||||++|+|+++|+ +|.|...+.++. ...+...++++|........|..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~~~~~~---------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FVHESKKCLVNQREVHRDTLGFSE---------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCHHH----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hhhhccccceeeeeeccccCCHHH----------
Confidence 67899999999999999999999999999886 577655444432 122333455555432222122111
Q ss_pred CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007383 141 PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASR 220 (605)
Q Consensus 141 ~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~ 220 (605)
+||++|..+|++|++|||| |..+.. .+.+++. .
T Consensus 188 ---------------------------------------~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~-~ 220 (356)
T 3jvv_A 188 ---------------------------------------ALRSALREDPDIILVGEMR---DLETIR----LALTAAE-T 220 (356)
T ss_dssp ---------------------------------------HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH-T
T ss_pred ---------------------------------------HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh-c
Confidence 9999999999999999999 665544 4444444 4
Q ss_pred CcEEEEEeCCCChHHHhcCCeEEEEeCC
Q 007383 221 HRTVILSIHQPSFKILSTIDRILLLSKG 248 (605)
Q Consensus 221 g~tii~~~H~~~~~i~~~~d~v~~l~~G 248 (605)
|.+|++|+|+.+. + +.+||++.|..|
T Consensus 221 G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 221 GHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp TCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred CCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 8899999999984 4 889999988554
No 113
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.64 E-value=2.5e-18 Score=169.80 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=101.8
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCeeCCcccccCceEEEcCCCCCCCCCCH----HHHHH
Q 007383 60 SLTAYPSQILAIVGPSGAGKSTLLDILSARTSP--TNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTV----YETFL 133 (605)
Q Consensus 60 s~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~--~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv----~e~l~ 133 (605)
.-..++|++++|+||||||||||+++|+|+.+| ..|.|.+++.+... ..++.++|++|++..++.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 345789999999999999999999999999986 78999998876543 234668999997765554444 22221
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007383 134 FSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTL 213 (605)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L 213 (605)
+.... .+.| +++ +.+++..++++||| ||+..+.++.+.+
T Consensus 89 ~~~~~------------------------------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 89 VFGNY------------------------------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp ETTEE------------------------------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHhcc------------------------------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHc
Confidence 11000 0111 111 34455568999999 9999999999987
Q ss_pred HHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHHHHH
Q 007383 214 KSISASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETFLL 264 (605)
Q Consensus 214 ~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~~~~ 264 (605)
. .+.||++++|+++. +.+ |+ +.+| .++++++...+.
T Consensus 128 ~-----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 128 P-----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp T-----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred c-----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHH
Confidence 6 37899999999863 443 43 6677 577777765543
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=7e-18 Score=181.63 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=99.3
Q ss_pred eEEEEeEEEEEecCCCCccccccccCCCCCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 23 KLTGSSISYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 23 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.|+++||+++| +.+.+++|+||+| +|+||||||||||+|+|+|...+..| .+|.
T Consensus 11 ~l~~~~l~~~y-----------------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~ 64 (418)
T 2qag_C 11 YVGFANLPNQV-----------------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGP 64 (418)
T ss_dssp ----CCCCCCT-----------------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSC
T ss_pred cEEEEecceeE-----------------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCc
Confidence 48888888876 3467999999998 99999999999999999999876544 1232
Q ss_pred eCC--cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 103 PIK--PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 103 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
... .....+.+++++|++.+++.+||.||+.+...... .+..+.+.+.++ ..++.+++||++
T Consensus 65 ~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~-------------~~~~~~l~qr~~ 128 (418)
T 2qag_C 65 SHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID-------------SKFEDYLNAESR 128 (418)
T ss_dssp C-----CCEEEEEECC------CEEEEEEECC--------------CHHHHHHHH-------------HHHHHHTTTSCC
T ss_pred ccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH-------------HHHHHHHHHHHH
Confidence 221 11123568999999888888999999887643210 010111111111 235567788999
Q ss_pred HHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 181 IGLSLLHDPA---VLLLDEPT-SGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 181 ia~aL~~~P~---illLDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
|||+++.+|+ ++++|||| .|||+... +.++++.. +.+||+++|..+
T Consensus 129 IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK~D 178 (418)
T 2qag_C 129 VNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAKAD 178 (418)
T ss_dssp -CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEESTT
T ss_pred HHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEccc
Confidence 9999999999 99999999 69999873 45556642 678888888654
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.61 E-value=7.7e-16 Score=150.36 Aligned_cols=156 Identities=18% Similarity=0.095 Sum_probs=102.9
Q ss_pred ceeeeeee-EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHH
Q 007383 53 TYILKNVS-LTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 53 ~~iL~~vs-~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
...|+++. +-+++|++++|+||||||||||++.|++ .+..+.+ |+..++. .+.. .
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~-----------------~i~~~~~----~~~~-~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVA-----------------YVDTEGG----FSPE-R 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEE-----------------EEESSCC----CCHH-H
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEE-----------------EEECCCC----CCHH-H
Confidence 34677776 4799999999999999999999999998 2222222 3332221 1111 1
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHH----
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE--RRRVSIGLSLLHD-PAVLLLDEPTSGLDSR---- 204 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe--rqRv~ia~aL~~~-P~illLDEPtsgLD~~---- 204 (605)
+.-.....+... +++++.+ . ....|+++ ++++..+++++.+ |+++++||||+++|+.
T Consensus 62 ~~~~~~~~~~~~-------~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~ 125 (220)
T 2cvh_A 62 LVQMAETRGLNP-------EEALSRF--------I-LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRS 125 (220)
T ss_dssp HHHHHHTTTCCH-------HHHHHHE--------E-EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSS
T ss_pred HHHHHHhcCCCh-------HHHhhcE--------E-EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchH
Confidence 111111111111 1122221 1 23445553 5788888899986 9999999999999973
Q ss_pred ----HHHHHHHHHHHHHhcCCcEEEEEeCCCCh------------HHHhcCCeEEEEeCC
Q 007383 205 ----SAFNVMQTLKSISASRHRTVILSIHQPSF------------KILSTIDRILLLSKG 248 (605)
Q Consensus 205 ----~~~~i~~~L~~l~~~~g~tii~~~H~~~~------------~i~~~~d~v~~l~~G 248 (605)
...++++.|++++++.|.|||+++|.... .+.+.+|++++|++.
T Consensus 126 ~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 126 GLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 33556777888887778999999998651 367889999999754
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.60 E-value=5.4e-20 Score=176.61 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=114.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhH
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQ 145 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 145 (605)
|++++|+||||||||||+++|++ +.+|.+.++|.++... ...++++|.....+..|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ-- 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC--
Confidence 78999999999999999999997 5689999998764211 235677776544455688888876543210000
Q ss_pred HHHHHHHHHHHcCCcccccccccCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007383 146 IDTIITVLLTELRLAHLASTRLAHNL--SGGERRRVSIGL------SLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSIS 217 (605)
Q Consensus 146 ~~~~v~~~l~~l~L~~~~~~~~~~~L--SgGerqRv~ia~------aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~ 217 (605)
...+++.+.. ....... +.+ |+|++|++.++. +++.+|+...+|| |||+..... .+.++.+.
T Consensus 74 ----~~~ild~~~~-~~~~~~~-~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 74 ----NDVVLDYIAF-PDEAEAL-AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp ----CEEEEESCCC-HHHHHHH-HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred ----CcEEEeeccC-HHHHHHH-HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 0001111100 0000111 334 888888888888 9999999888884 899988888 88888885
Q ss_pred hcCCcEEEEEeCC-CChHHHhcCCeEEEEeCCeEEEecChhhH
Q 007383 218 ASRHRTVILSIHQ-PSFKILSTIDRILLLSKGSVVHHGTLASL 259 (605)
Q Consensus 218 ~~~g~tii~~~H~-~~~~i~~~~d~v~~l~~G~iv~~g~~~~~ 259 (605)
+ .+.+||.++|+ ++ ++.+.+|+|+ ++|+++..|+++-+
T Consensus 144 ~-~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 144 I-DERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp C-CTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred C-CccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 4 46799999998 87 5889999999 99999999987654
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.58 E-value=4.6e-18 Score=162.96 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=99.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc-cccCceEEEcCCCCCCCCCCHHHHHHHHHhcC-
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS-SFRKLSAYVPQHDACIPSLTVYETFLFSARLL- 139 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~- 139 (605)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.++... ..++.++|++|+.. +..||.|++.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence 3679999999999999999999999998 6789999998764211 12344678888654 4578999987754321
Q ss_pred -CCChhHHHHHHHHHHHHcCCcccc--cccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007383 140 -VPKTSQIDTIITVLLTELRLAHLA--STRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSI 216 (605)
Q Consensus 140 -~~~~~~~~~~v~~~l~~l~L~~~~--~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l 216 (605)
.... ..++.++...++.... +.. +..+|+|++||+.++|++.++|+++ +|+.....+.+.++.+
T Consensus 81 ~~~~~----~~~~~~~~~~~l~~~~~~~~~-~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 81 KEGYF----VILDGVVRPDWLPAFTALARP-LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HTSCE----EEECSCCCTTTTHHHHTTCSC-EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred ccCCe----EEEeccCcHHHHHHHHhcCCC-eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 0000 0001111112222221 223 3679999999999999999999876 6888888888887776
Q ss_pred HhcCCcEEEEEe
Q 007383 217 SASRHRTVILSI 228 (605)
Q Consensus 217 ~~~~g~tii~~~ 228 (605)
... ...+|.++
T Consensus 148 ~~~-~~~~i~t~ 158 (191)
T 1zp6_A 148 GAF-EHHVLPVS 158 (191)
T ss_dssp GGG-GGGEEECT
T ss_pred Ccc-cccEEECC
Confidence 432 33344443
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.58 E-value=8.4e-18 Score=168.50 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=104.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHh----
Q 007383 65 PSQILAIVGPSGAGKSTLLDILS---ARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSAR---- 137 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~---g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~---- 137 (605)
++++++|+||||||||||+++|+ |+..++.|+|.++|.+.. ....+.+++++|+..+++..|+.|++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999 999999999988876532 1223345666787778888899999987532
Q ss_pred ----cCCCChhHHHHHHHHHHH--HcC------------CcccccccccCCCCHHHHHHHHHHHHH-hhCCCEEEEe---
Q 007383 138 ----LLVPKTSQIDTIITVLLT--ELR------------LAHLASTRLAHNLSGGERRRVSIGLSL-LHDPAVLLLD--- 195 (605)
Q Consensus 138 ----~~~~~~~~~~~~v~~~l~--~l~------------L~~~~~~~~~~~LSgGerqRv~ia~aL-~~~P~illLD--- 195 (605)
+.+.+... ..++.+.+ ..+ +....++. +..||| |+ ++| +.+|++++||
T Consensus 105 ~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 105 QHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-IHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp SCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-EETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-CcCCCC----Cc---cccccCCCccccccccc
Confidence 11111111 12222221 122 22333444 478999 66 677 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHhc
Q 007383 196 -EPTSGLDSRSAFNVMQTLKSISAS 219 (605)
Q Consensus 196 -EPtsgLD~~~~~~i~~~L~~l~~~ 219 (605)
|||+|||..+...+.+.++++.++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999998754
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.56 E-value=8.4e-16 Score=152.42 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=91.8
Q ss_pred eeeeee-EEEeCCeEEEEECCCCCcHHHHHHHHhC--CCCC-----CccEEEECCeeC-Cccc---ccCceEEEcCCCCC
Q 007383 55 ILKNVS-LTAYPSQILAIVGPSGAGKSTLLDILSA--RTSP-----TNGTILLNSSPI-KPSS---FRKLSAYVPQHDAC 122 (605)
Q Consensus 55 iL~~vs-~~i~~Ge~~ailG~nGaGKTTLL~~l~g--~~~~-----~~G~I~~~g~~~-~~~~---~~~~i~yv~Q~~~l 122 (605)
.|+.+- +-+++|++++|+||||||||||++.|++ ..++ ..|.+++++++. .... ..+.+++.+|
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~---- 87 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS---- 87 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH----
Confidence 344433 5689999999999999999999999999 5554 456666665542 1100 0111111111
Q ss_pred CCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 007383 123 IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR-VSIGLSLL--HDPAVLLLDEPTS 199 (605)
Q Consensus 123 ~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR-v~ia~aL~--~~P~illLDEPts 199 (605)
++++.+ .+....+..+... +.-+.+++ .+|+++++|||++
T Consensus 88 -----------------------------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 88 -----------------------------DVLDNV--------AYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp -----------------------------HHHHTE--------EEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred -----------------------------HHhhCe--------EEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 111111 0112344444332 23233333 5899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhcCCcEEEEEeCCCChH------------------HHhcCCeEEEEeCC
Q 007383 200 GLDSR-------S-----AFNVMQTLKSISASRHRTVILSIHQPSFK------------------ILSTIDRILLLSKG 248 (605)
Q Consensus 200 gLD~~-------~-----~~~i~~~L~~l~~~~g~tii~~~H~~~~~------------------i~~~~d~v~~l~~G 248 (605)
.+|+. . ..++++.|++++++.|.|||+++|..... +...+|.+++|++|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 45677778888777789999999965421 22278999999865
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.55 E-value=3.7e-16 Score=166.28 Aligned_cols=129 Identities=21% Similarity=0.339 Sum_probs=98.2
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPT-NGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFL 133 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (605)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. ...++.+++|+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-YVFKHKKSIVNQRE------------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-SCCCCSSSEEEEEE-------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-hhhccCceEEEeee-------------
Confidence 577766 7899999999999999999999999999987 899988776653 23456678888841
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007383 134 FSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTL 213 (605)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L 213 (605)
+|++ +..+ +.+|+++|..+|+++++|||+ |+.+... .+
T Consensus 191 -----------------------~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l 228 (372)
T 2ewv_A 191 -----------------------VGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET---AL 228 (372)
T ss_dssp -----------------------BTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HH
T ss_pred -----------------------cCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HH
Confidence 1221 1234 469999999999999999999 7766443 34
Q ss_pred HHHHhcCCcEEEEEeCCCChHHHhcCCeEEEE
Q 007383 214 KSISASRHRTVILSIHQPSFKILSTIDRILLL 245 (605)
Q Consensus 214 ~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l 245 (605)
+.. . .|.+|+.++|+.+ +.+.+||++.|
T Consensus 229 ~~~-~-~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 229 RAA-E-TGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HHH-T-TTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HHH-h-cCCEEEEEECcch--HHHHHHHHHHh
Confidence 433 3 4789999999965 56777776544
No 121
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.55 E-value=9.5e-15 Score=138.73 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=72.0
Q ss_pred cCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEE
Q 007383 168 AHNLSGGERRRVSIGLSLLH----DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~ 243 (605)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|++||+.. ..+.+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~--~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDV--MMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHH--HHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHH--HHHhCCEEE
Confidence 47899999999999999974 4699999999999999999999999999864 468999999964 678999998
Q ss_pred EEe--CCeE-EEecChhhH
Q 007383 244 LLS--KGSV-VHHGTLASL 259 (605)
Q Consensus 244 ~l~--~G~i-v~~g~~~~~ 259 (605)
.+. +|.. +...+.++.
T Consensus 138 ~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEETTEEEEEECCHHHH
T ss_pred EEEecCCEEEEEEEEcHHH
Confidence 664 6643 233444443
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=9.2e-17 Score=172.47 Aligned_cols=166 Identities=18% Similarity=0.184 Sum_probs=111.6
Q ss_pred CceeeeeeeEEEeCCeE--EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCC---cccccCceEEEcCCCCCCCCC
Q 007383 52 PTYILKNVSLTAYPSQI--LAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK---PSSFRKLSAYVPQHDACIPSL 126 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~--~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~l 126 (605)
..+ |+++|+++++|++ ++|+||||||||||+|+|+|.. ++|.++. +...++.++|++|++.+++.+
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCcccccc
Confidence 345 9999999999999 9999999999999999999984 2333321 223345799999999888889
Q ss_pred CHHHHHHHHHhcCCC-Ch----hHHHHHHHHHHHHc-CCcc----ccccc----c------cCCCCHHHHHHHHHHHHHh
Q 007383 127 TVYETFLFSARLLVP-KT----SQIDTIITVLLTEL-RLAH----LASTR----L------AHNLSGGERRRVSIGLSLL 186 (605)
Q Consensus 127 Tv~e~l~~~~~~~~~-~~----~~~~~~v~~~l~~l-~L~~----~~~~~----~------~~~LSgGerqRv~ia~aL~ 186 (605)
||.||+.++...... .. +..++..+++++.. ++.. ..+.+ + .++++-.+ +.|+++|.
T Consensus 98 tv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~ 174 (427)
T 2qag_B 98 TIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLD 174 (427)
T ss_dssp EEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTC
T ss_pred chhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHh
Confidence 999998765321100 00 11234455566654 4431 12222 1 13566666 78999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCcEEEEEeCC
Q 007383 187 HDPAVLLLDEPTSGLDSRSAFNVMQTLKS-ISASRHRTVILSIHQ 230 (605)
Q Consensus 187 ~~P~illLDEPtsgLD~~~~~~i~~~L~~-l~~~~g~tii~~~H~ 230 (605)
.+++++++|||+..|.+.....+.+.+++ +. ..|.+|+.++.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCC
Confidence 99999999999999999999999999987 65 468888888764
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.54 E-value=3.1e-18 Score=181.95 Aligned_cols=164 Identities=17% Similarity=0.088 Sum_probs=105.4
Q ss_pred eeeeeeEEEeC--CeEEEEECCCCCcHHHHHHHHhCCCCCCc----cEEEEC----CeeCC--cccccCceEEEcCCCCC
Q 007383 55 ILKNVSLTAYP--SQILAIVGPSGAGKSTLLDILSARTSPTN----GTILLN----SSPIK--PSSFRKLSAYVPQHDAC 122 (605)
Q Consensus 55 iL~~vs~~i~~--Ge~~ailG~nGaGKTTLL~~l~g~~~~~~----G~I~~~----g~~~~--~~~~~~~i~yv~Q~~~l 122 (605)
+.+.|++++++ |+.++|+||||||||||+++|+|+++|++ |+|.++ |.+.. ...+ +.+++++|+..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999988 887764 22210 1111 123333332211
Q ss_pred CCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC
Q 007383 123 IPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL-HDPAVLLLDE---PT 198 (605)
Q Consensus 123 ~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~-~~P~illLDE---Pt 198 (605)
+ ..|+.||+.+. + .+..++. ...+|+|++||..+++++. .+|++++||| |+
T Consensus 236 ~-~~t~~~nl~~~----------------------~-~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 236 Y-AVRHSHKIAFI----------------------D-TDFITTQ-AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp H-HHHHCSSEEEE----------------------S-SCHHHHH-HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred H-HHhccCCEEEE----------------------e-CCchHHH-HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 1 01222221100 0 0111112 2346677788888888774 5999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEe
Q 007383 199 ------SGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLS 246 (605)
Q Consensus 199 ------sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~ 246 (605)
.++|+..+..+.+.|+++.++.+.+|++++|. + +..+++|++.+++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 58999999999999999876557899999975 3 3556666655543
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.53 E-value=9.2e-16 Score=162.65 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=102.1
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee-CCcccccCceEEEc-CCCCCCCCCCHHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP-IKPSSFRKLSAYVP-QHDACIPSLTVYETF 132 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~-~~~~~~~~~i~yv~-Q~~~l~~~lTv~e~l 132 (605)
+++++|+.+++|++++|+||||||||||+|+|+|+++|++|.|.++|.. +.....++.++|++ |++.+-
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~--------- 234 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEE--------- 234 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccc---------
Confidence 3499999999999999999999999999999999999999999999853 22223567789998 654320
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~ 212 (605)
++++...|-.|+.++..+|+.+++||+.. .++.+.
T Consensus 235 --------------------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~ 269 (361)
T 2gza_A 235 --------------------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDF 269 (361)
T ss_dssp ------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHH
T ss_pred --------------------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHH
Confidence 01222345556666667899999999986 345566
Q ss_pred HHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 213 LKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 213 L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
|+.+. .+..|++.++|..+ ....+||+..+.+|.
T Consensus 270 l~~l~-~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 270 INVAA-SGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp HHHHH-TTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred HHHHh-cCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 77764 34568899999976 578889999887763
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.53 E-value=3.3e-15 Score=157.24 Aligned_cols=122 Identities=19% Similarity=0.103 Sum_probs=90.8
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEEC-CeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS-PTNGTILLN-SSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~-~~~G~I~~~-g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
-+++++.. .+|++++|+||||||||||+|+|+|..+ +.+|+|.++ |+... ...++.+++++|+..++++.||+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 35666654 4899999999999999999999999999 999999987 76542 2345678999999989998899884
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSL 185 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL 185 (605)
.+...+.++..+.+.++++.+|+.+..+... .++| ||+||++||+++
T Consensus 282 ----~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ----GLWHLEPEQITQGFVEFHDYLGHCKYRDCKH-DADP-GCAIREAVENGA 328 (358)
T ss_dssp ----CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCS-SSCT-TCHHHHHHHHTS
T ss_pred ----hhcCCCHHHHHHHHHHHHHHcCCchhcCCCc-ccCC-HHHHHHHHHhcC
Confidence 1223344556677888999999988887774 8999 999999999864
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.52 E-value=3.1e-18 Score=178.62 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=106.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC--------CCCccEEEECCeeCCcc------------------cccCceEEE---c
Q 007383 67 QILAIVGPSGAGKSTLLDILSART--------SPTNGTILLNSSPIKPS------------------SFRKLSAYV---P 117 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~--------~~~~G~I~~~g~~~~~~------------------~~~~~i~yv---~ 117 (605)
++++|+|+||||||||||.|.|.. .++.|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 67999999999886421 233446666 5
Q ss_pred CCCCCCCCCCHHHHHHHHH--hc---C-CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCE
Q 007383 118 QHDACIPSLTVYETFLFSA--RL---L-VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAV 191 (605)
Q Consensus 118 Q~~~l~~~lTv~e~l~~~~--~~---~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~i 191 (605)
|+..+++..++.|+..++. .+ + ..+......+++.++..+++.+..+.. .++|+||+||+..+++++.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~--~~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM--NQFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH--HHCHHHHHHHHTCSEEEEECTTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH--hhchHHHHHHHhCCEEEEECccc
Confidence 7666556677777665321 00 0 000000000111122333444333332 37899999999999999999998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCC
Q 007383 192 LLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTID 240 (605)
Q Consensus 192 llLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d 240 (605)
+ ||| ..+.+.|+++. .+.+|++++|++. ++..++|
T Consensus 163 ~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 163 A--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp C--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGSC
T ss_pred C--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHhC
Confidence 7 999 78888888874 4789999999865 3444444
No 127
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.52 E-value=5.5e-17 Score=152.04 Aligned_cols=79 Identities=16% Similarity=0.101 Sum_probs=67.6
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHH
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
.+.+++++|+++++|++++|+||||||||||+|+|+|.+ |++|+|.++|.++....-.+ .+++|+..++ .+||.|+
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTH
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHH
Confidence 456899999999999999999999999999999999999 99999999998774211112 2899998888 8999999
Q ss_pred HHH
Q 007383 132 FLF 134 (605)
Q Consensus 132 l~~ 134 (605)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.50 E-value=5.4e-16 Score=168.65 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=107.2
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-------cc--ccCceEEEcCCCCCCCCCC
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-------SS--FRKLSAYVPQHDACIPSLT 127 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~--~~~~i~yv~Q~~~l~~~lT 127 (605)
+++|+++++|++++|+|+||||||||+++|+|++++.+|+|.++|.+... .. .++.++|++|+..+++.+|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 68999999999999999999999999999999999999999998776532 11 2567999999988888899
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh-hCCC-EEEEeCCCCCCCHHH
Q 007383 128 VYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL-HDPA-VLLLDEPTSGLDSRS 205 (605)
Q Consensus 128 v~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~-~~P~-illLDEPtsgLD~~~ 205 (605)
|++++.++..- +.. . -+++..|+.+..... .. --+|++.+++++. ..|. +||..++|+|.|..
T Consensus 364 V~e~l~~a~~~-~~D------v--VLIDTaGrl~~~~~l-m~----EL~kiv~iar~l~~~~P~evLLvLDattGq~al- 428 (503)
T 2yhs_A 364 IFDAIQAAKAR-NID------V--LIADTAGRLQNKSHL-ME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV- 428 (503)
T ss_dssp HHHHHHHHHHT-TCS------E--EEECCCCSCCCHHHH-HH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-
T ss_pred HHHHHHHHHhc-CCC------E--EEEeCCCccchhhhH-HH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHHH-
Confidence 99999987431 000 0 012222222111111 12 2247788888663 4574 55555588886554
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCC
Q 007383 206 AFNVMQTLKSISASRHRTVILSIHQ 230 (605)
Q Consensus 206 ~~~i~~~L~~l~~~~g~tii~~~H~ 230 (605)
+.++.+.+..+.|.+++||-
T Consensus 429 -----~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 429 -----SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp -----HHHHHHHHHTCCSEEEEECG
T ss_pred -----HHHHHHHhhcCCCEEEEEcC
Confidence 34555554557899999993
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.49 E-value=7.6e-16 Score=160.90 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=110.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc-------cccC--ceEEEcCCCCCCCCCCHHHHHHH
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS-------SFRK--LSAYVPQHDACIPSLTVYETFLF 134 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~-------~~~~--~i~yv~Q~~~l~~~lTv~e~l~~ 134 (605)
++|++++|+||||||||||++.|+|+++|++|+|.++|.++... .+++ .+.+++|+..+.|.+||+||+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986421 1223 35699999999999999999987
Q ss_pred HHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 007383 135 SARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLK 214 (605)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~ 214 (605)
+..... . . .+++..|+.+..+.. ..+|| .+++++..++.+++||.+|. +++++.++
T Consensus 207 ~~~~~~-d------~--vliDtaG~~~~~~~l-~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~~~~ 262 (328)
T 3e70_C 207 AKARGI-D------V--VLIDTAGRSETNRNL-MDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVEQAR 262 (328)
T ss_dssp HHHHTC-S------E--EEEEECCSCCTTTCH-HHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHHHHH
T ss_pred HHhccc-h------h--hHHhhccchhHHHHH-HHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHHHHH
Confidence 642100 0 0 012223332222222 13333 38888887777888885443 45666777
Q ss_pred HHHhcCCcEEEEEeCCCCh--------HHHhcCCeEEEEeCCeE
Q 007383 215 SISASRHRTVILSIHQPSF--------KILSTIDRILLLSKGSV 250 (605)
Q Consensus 215 ~l~~~~g~tii~~~H~~~~--------~i~~~~d~v~~l~~G~i 250 (605)
.+.++.+.|+|++||.... ......-.|..+..|+-
T Consensus 263 ~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 263 QFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 7776668999999996421 11233346666766654
No 130
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.48 E-value=1.3e-16 Score=151.33 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=90.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCeeCC------ccccc-CceE----EEcCCCCCCCCCCHHHHH
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTSPT---NGTILLNSSPIK------PSSFR-KLSA----YVPQHDACIPSLTVYETF 132 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~~~---~G~I~~~g~~~~------~~~~~-~~i~----yv~Q~~~l~~~lTv~e~l 132 (605)
++++|+|+||||||||+++|+|+++|. .|.|.++|.++. .+.+| +.+| +++|+..++ +.|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999987 899999998742 23455 3567 889887654 110
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHH-cCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCCCC---C
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTE-LRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVL-------LLDEPTSG---L 201 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~il-------lLDEPtsg---L 201 (605)
. ..+....++++++. +. ..|+.+..+||||||||++|||+++.+|++. .-|.|..+ +
T Consensus 77 -------~--~~~~~a~l~~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f 144 (171)
T 2f1r_A 77 -------V--SEEEGNDLDWIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWF 144 (171)
T ss_dssp -------C--CHHHHTCHHHHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEE
T ss_pred -------C--ChhhhhCHHHHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCccc
Confidence 0 01111134455555 43 2456666789999999999999999999873 23555322 3
Q ss_pred CHHHHHHHHHHHHHHHhcCC
Q 007383 202 DSRSAFNVMQTLKSISASRH 221 (605)
Q Consensus 202 D~~~~~~i~~~L~~l~~~~g 221 (605)
|......+.+.+.+...++|
T Consensus 145 ~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 145 RRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CTTCHHHHHHHHHHHHTC--
T ss_pred CcccHHHHHHHHHHHHhccC
Confidence 44556788888877666654
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.46 E-value=1.6e-16 Score=166.99 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=111.2
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-------ccccCceEEEcCCCCCCCC
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-------SSFRKLSAYVPQHDACIPS 125 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~ 125 (605)
+.+|+++|+++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.++.. ...++.+++++|++.++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 568999999999999999999999999999999999999999999999987632 1245678999999877653
Q ss_pred C------------CHHHHHHHH-------------------------Hh----cCCCC-hhHHH---HHHHHHHHHcCCc
Q 007383 126 L------------TVYETFLFS-------------------------AR----LLVPK-TSQID---TIITVLLTELRLA 160 (605)
Q Consensus 126 l------------Tv~e~l~~~-------------------------~~----~~~~~-~~~~~---~~v~~~l~~l~L~ 160 (605)
. ++.|.+... +. +.... .++.+ +.+.+....+.+
T Consensus 122 ~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl- 200 (337)
T 2qm8_A 122 PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV- 200 (337)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE-
T ss_pred cCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE-
Confidence 2 123332110 00 00000 01100 011111112222
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007383 161 HLASTRLAHNLSGGERRRVSIGLSLLH------DPAVLLLDEPTSGLDSRSAFNVMQTLKSISA 218 (605)
Q Consensus 161 ~~~~~~~~~~LSgGerqRv~ia~aL~~------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~ 218 (605)
+..|......+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++.+
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 222311124579999999999999987 688877 999999999999999988754
No 132
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=7.5e-15 Score=151.89 Aligned_cols=119 Identities=11% Similarity=0.073 Sum_probs=86.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE---CCeeCCcc--ccc-CceEEEcCCCCCC-----CCCCHHHH
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL---NSSPIKPS--SFR-KLSAYVPQHDACI-----PSLTVYET 131 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~---~g~~~~~~--~~~-~~i~yv~Q~~~l~-----~~lTv~e~ 131 (605)
+.+|++++|+||||||||||+|+|+ +.+|.+|+|.+ +|++++.. ..+ +.+||++|++.+. +.+|+ |+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 3569999999999999999999999 99999999999 99877532 222 3689999998653 67899 88
Q ss_pred H--HHH------HhcCC-CChhHHHHHHHHHHHHcCCcc-cccccccCCCCHHHHHHHHHHHH
Q 007383 132 F--LFS------ARLLV-PKTSQIDTIITVLLTELRLAH-LASTRLAHNLSGGERRRVSIGLS 184 (605)
Q Consensus 132 l--~~~------~~~~~-~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~~LSgGerqRv~ia~a 184 (605)
+ .|. ++..+ ....+...+++++++.++|.+ ..++. ++.|||.++|++.|||+
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-LKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-HHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 8 443 12222 123344567899999999986 55555 58999999999999874
No 133
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.40 E-value=7.5e-13 Score=140.72 Aligned_cols=75 Identities=27% Similarity=0.430 Sum_probs=67.0
Q ss_pred cCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCC
Q 007383 168 AHNLSGGERRRV------SIGLSLLHD-PAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTID 240 (605)
Q Consensus 168 ~~~LSgGerqRv------~ia~aL~~~-P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d 240 (605)
+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+|
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~~--~~~~~d 353 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHRE--LEDVAD 353 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCGG--GGGGCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChHH--HHhhCC
Confidence 468999999988 557888999 999999999999999999999999999743 469999999975 578999
Q ss_pred eEEEEe
Q 007383 241 RILLLS 246 (605)
Q Consensus 241 ~v~~l~ 246 (605)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 134
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.38 E-value=1.9e-13 Score=129.77 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=77.4
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcC
Q 007383 60 SLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLL 139 (605)
Q Consensus 60 s~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 139 (605)
++.+++|+.++|.||||+|||||+++|++...+.+|.. +.| +++.|.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~---------------~~~----------~~~~~~~~~~---- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR---------------GYF----------FDTKDLIFRL---- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC---------------CCE----------EEHHHHHHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe---------------EEE----------EEHHHHHHHH----
Confidence 35567899999999999999999999999876544421 111 2333332211
Q ss_pred CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHh
Q 007383 140 VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS-GLDSRSAFNVMQTLKSISA 218 (605)
Q Consensus 140 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~ 218 (605)
...... .... -....+.+|++|+||||++ ++|+..+..+.+++.+..+
T Consensus 83 -----------~~~~~~------------~~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~ 131 (180)
T 3ec2_A 83 -----------KHLMDE------------GKDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN 131 (180)
T ss_dssp -----------HHHHHH------------TCCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred -----------HHHhcC------------chHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 011110 0000 1123345999999999995 9999999999999998865
Q ss_pred cCCcEEEEEeCCCCh
Q 007383 219 SRHRTVILSIHQPSF 233 (605)
Q Consensus 219 ~~g~tii~~~H~~~~ 233 (605)
.|+++|++||.+..
T Consensus 132 -~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 132 -NLKSTIITTNYSLQ 145 (180)
T ss_dssp -TTCEEEEECCCCSC
T ss_pred -cCCCEEEEcCCChh
Confidence 47899999998764
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.38 E-value=1.7e-14 Score=155.19 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=98.9
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHH-
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLF- 134 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~- 134 (605)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+ .....++++.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGli 216 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGII 216 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccc--eecceeeEEEecCc--ceEEEEeccccc
Confidence 489999999999999999999999999999999854 23443322 12234556655430 01111111000
Q ss_pred --HHhcCCCChhH--HHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 007383 135 --SARLLVPKTSQ--IDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVM 210 (605)
Q Consensus 135 --~~~~~~~~~~~--~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 210 (605)
........... ..++++.++..+++. +.. ..++|+|++||+.+|++|+.+|.++++ +++|...+ ..+
T Consensus 217 ~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~ 287 (416)
T 1udx_A 217 EGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAV 287 (416)
T ss_dssp CCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHH
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHH
Confidence 00000000000 011122223333333 233 478999999999999999999999999 99999877 555
Q ss_pred HHHHHHHhcCCcEEEEEeCCCChHHHhcCC
Q 007383 211 QTLKSISASRHRTVILSIHQPSFKILSTID 240 (605)
Q Consensus 211 ~~L~~l~~~~g~tii~~~H~~~~~i~~~~d 240 (605)
+.+++..++.+.+++.+|..-...+.++++
T Consensus 288 ~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 288 KALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp HHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 555555444566666655432323555443
No 136
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.37 E-value=2.7e-13 Score=125.53 Aligned_cols=95 Identities=19% Similarity=0.336 Sum_probs=71.9
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc--EEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHH
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG--TILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G--~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| .+++++.+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------ 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------ 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC------------------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH------------------------
Confidence 456666 8999999999999999999999998865 45 444443221100
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQ 211 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~ 211 (605)
+++.+|++|++|||++ +|...+..+.+
T Consensus 79 ----------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~ 105 (149)
T 2kjq_A 79 ----------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFS 105 (149)
T ss_dssp ----------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHH
T ss_pred ----------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHH
Confidence 1245799999999998 66656889999
Q ss_pred HHHHHHhcCCcE-EEEEeCCCC
Q 007383 212 TLKSISASRHRT-VILSIHQPS 232 (605)
Q Consensus 212 ~L~~l~~~~g~t-ii~~~H~~~ 232 (605)
++.++.++ |++ +|+++|.+.
T Consensus 106 li~~~~~~-g~~~iiits~~~p 126 (149)
T 2kjq_A 106 IFNRFRNS-GKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHH-TCCEEEEEESSCT
T ss_pred HHHHHHHc-CCcEEEEECCCCH
Confidence 99998765 667 888888654
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.8e-13 Score=141.15 Aligned_cols=136 Identities=18% Similarity=0.199 Sum_probs=77.5
Q ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCeeCC-cccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHH
Q 007383 69 LAIVGPSGAGKSTLLDILSA-RTSPTNGTILLNSSPIK-PSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQI 146 (605)
Q Consensus 69 ~ailG~nGaGKTTLL~~l~g-~~~~~~G~I~~~g~~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 146 (605)
+.|.||||+|||||+++|++ +..+..|++.++|.+.. +...+..+++++|.+.+.-..+ + .+....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~-- 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNNDR-- 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------------CCH--
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcch--
Confidence 89999999999999999999 78889999999997754 2223456888888765321111 0 000110
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 007383 147 DTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVIL 226 (605)
Q Consensus 147 ~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~ 226 (605)
..+++.++.+......+.. ..+|| +..+|+++++|||++ ||+.++..+.+.|.+.. .+.++|+
T Consensus 107 -~~~~~~i~~~~~~~~~~~~--~~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il 169 (354)
T 1sxj_E 107 -IVIQELLKEVAQMEQVDFQ--DSKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIM 169 (354)
T ss_dssp -HHHHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEE
T ss_pred -HHHHHHHHHHHHhcccccc--ccccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEE
Confidence 1233333333211111111 13566 788999999999999 99999999999999874 3689999
Q ss_pred EeCCCCh
Q 007383 227 SIHQPSF 233 (605)
Q Consensus 227 ~~H~~~~ 233 (605)
++|+++.
T Consensus 170 ~t~~~~~ 176 (354)
T 1sxj_E 170 VCDSMSP 176 (354)
T ss_dssp EESCSCS
T ss_pred EeCCHHH
Confidence 9999863
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.35 E-value=2.9e-12 Score=137.24 Aligned_cols=148 Identities=12% Similarity=0.167 Sum_probs=91.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHH--HHhCCCCCCcc-----EEEECCeeC-Cccc---ccCceEEEcCCCCCCCCCCHH
Q 007383 61 LTAYPSQILAIVGPSGAGKSTLLD--ILSARTSPTNG-----TILLNSSPI-KPSS---FRKLSAYVPQHDACIPSLTVY 129 (605)
Q Consensus 61 ~~i~~Ge~~ailG~nGaGKTTLL~--~l~g~~~~~~G-----~I~~~g~~~-~~~~---~~~~i~yv~Q~~~l~~~lTv~ 129 (605)
+-+++|++++|+||||||||||++ ++++..+++.| .++++++.. .... +.+.+++.+| ++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vl 244 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DAL 244 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHh
Confidence 679999999999999999999999 45677776444 666665532 1000 0111111111 111
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH
Q 007383 130 ETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSG-GERRRVSIGLSLL--HDPAVLLLDEPTSGLDSRSA 206 (605)
Q Consensus 130 e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSg-GerqRv~ia~aL~--~~P~illLDEPtsgLD~~~~ 206 (605)
||+ .+....++ .+.+.+.-+.+++ .+|+++++|||++.+|+...
T Consensus 245 eni---------------------------------~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 245 NNV---------------------------------AYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp HTE---------------------------------EEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred hcE---------------------------------EEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 111 01111222 1233333333333 47999999999999997533
Q ss_pred ------------HHHHHHHHHHHhcCCcEEEEEeCCCC------------------hHHHhcCCeEEEEeCCe
Q 007383 207 ------------FNVMQTLKSISASRHRTVILSIHQPS------------------FKILSTIDRILLLSKGS 249 (605)
Q Consensus 207 ------------~~i~~~L~~l~~~~g~tii~~~H~~~------------------~~i~~~~d~v~~l~~G~ 249 (605)
.++++.|++++++.|.|||+++|... ..+...+|.++.|++++
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 67889999999888999999999821 12456789999998653
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.34 E-value=5e-15 Score=159.51 Aligned_cols=132 Identities=19% Similarity=0.159 Sum_probs=95.4
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-------ccccCceEEEc---------
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-------SSFRKLSAYVP--------- 117 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~--------- 117 (605)
.+|+++ + .++|++++|+|||||||||||++|+|.++|.+|+|.+.|.++.. ..+++.+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILR 234 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGG
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhc
Confidence 467777 4 38999999999999999999999999999999999999887631 12334455654
Q ss_pred CCCCC--CCC----CCHHHHHHHHHhcC---C-CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhh
Q 007383 118 QHDAC--IPS----LTVYETFLFSARLL---V-PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLH 187 (605)
Q Consensus 118 Q~~~l--~~~----lTv~e~l~~~~~~~---~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~ 187 (605)
|++.. ++. .|+.+++.++..-. . .......+.++ .+..+|+.+.. . +..|||||+|| ||++|+.
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~~--~-~~~LSgg~~QR--LaraL~~ 308 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPFL--I-SSSLLGVLAQR--LVRTLCP 308 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHHH--H-HHHEEEEEEEE--EEEEECT
T ss_pred cCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHHH--H-HHHHHHHHHHH--hhhhhcC
Confidence 88754 343 68999988764211 0 00111122333 46778887643 3 57899999999 9999999
Q ss_pred CCCEEE
Q 007383 188 DPAVLL 193 (605)
Q Consensus 188 ~P~ill 193 (605)
+|++..
T Consensus 309 ~p~~~~ 314 (418)
T 1p9r_A 309 DCKEPY 314 (418)
T ss_dssp TTCEEE
T ss_pred CCCccC
Confidence 999875
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.34 E-value=1.4e-15 Score=167.89 Aligned_cols=173 Identities=14% Similarity=0.146 Sum_probs=110.7
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee-CCcccccCceEEEcCCCC---------
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP-IKPSSFRKLSAYVPQHDA--------- 121 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~-~~~~~~~~~i~yv~Q~~~--------- 121 (605)
...+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|+++|.+ +... -...++++.|...
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~-~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY-HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC-CSSEEEEECBCCSSSCCBCHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC-CCCeEEEEeecccccCCcCHHH
Confidence 3568899999999999999999999999999999999999999999999865 2211 1233555554432
Q ss_pred -------------CCCCCCHHHHHHHHHhc-CCCCh--hHHHHHHHHHHHHcC-----Ccc----ccc---ccccCCCCH
Q 007383 122 -------------CIPSLTVYETFLFSARL-LVPKT--SQIDTIITVLLTELR-----LAH----LAS---TRLAHNLSG 173 (605)
Q Consensus 122 -------------l~~~lTv~e~l~~~~~~-~~~~~--~~~~~~v~~~l~~l~-----L~~----~~~---~~~~~~LSg 173 (605)
++..++..|++.+.... .+... .-....+.++++.+. +.. ..+ .. ...+|+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~-~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQ-TMWVRG 403 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE-EEEESS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEE-EEEEeC
Confidence 22345555554433222 11100 000001222333322 211 111 11 245799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE--EeCCCChHHHhcCC
Q 007383 174 GERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVIL--SIHQPSFKILSTID 240 (605)
Q Consensus 174 GerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~--~~H~~~~~i~~~~d 240 (605)
|||||+.++. + | |+|||+.....+++.|.++.+ .++|+++ ++|+++ ++.+.++
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHH-HHHHHcC
Confidence 9999877651 2 7 999999888888888888754 4788875 899987 4666553
No 141
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.33 E-value=4.6e-14 Score=145.01 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=88.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHh----c-
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSAR----L- 138 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~----~- 138 (605)
+++.+++|.|+||||||||.+.|++++.+. | . . ++.+.+|+||+.+++. ++++|+.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-----C-CceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 468899999999999999999999998652 2 0 1 3456677999988865 88999987631 1
Q ss_pred -CCCChhHHHHHHHHHHHHcCCc------c-c-ccccccCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 007383 139 -LVPKTSQIDTIITVLLTELRLA------H-L-ASTRLAHNLSGGERRRVSIG--LSLLHDPAVLLLDEPTSGLDSRS 205 (605)
Q Consensus 139 -~~~~~~~~~~~v~~~l~~l~L~------~-~-~~~~~~~~LSgGerqRv~ia--~aL~~~P~illLDEPtsgLD~~~ 205 (605)
.+.+.....+...+.++.+.-. . . .... ...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 95 ~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y-~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKY-DKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCE-ETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hccCcchhHHHHHHHHHHHhhccCccccCcceeeccC-ccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1112222234455666666432 1 0 1111 468999999999997 555 999999999999999853
No 142
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.27 E-value=3.1e-13 Score=139.63 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=73.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE---CCeeCCcc--cc-cCceEEEcCCCC--------------
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL---NSSPIKPS--SF-RKLSAYVPQHDA-------------- 121 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~---~g~~~~~~--~~-~~~i~yv~Q~~~-------------- 121 (605)
++.+|++++|+||||||||||||+|+|+.+|++|+|.+ +|++++.. .. .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 34579999999999999999999999999999999999 89887532 12 135899999974
Q ss_pred --CCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCH
Q 007383 122 --CIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLA-HLASTRLAHNLSG 173 (605)
Q Consensus 122 --l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~~LSg 173 (605)
+++.+|+ ||+.|.. +.. ..+...++.++++.+||. +..++. ++.||+
T Consensus 245 ~~l~~~~~~-~n~~~~~-~~~--~~e~~~~v~~~l~~~~L~~~~~~~~-~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSD-CNH--VDEPECGVKEAVENGEIAESRYENY-VKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTT-CCS--SSCSSCHHHHHHHHTSSCHHHHHHH-HHHHHH
T ss_pred HHHHHhccc-ccCcCCC-CcC--CCCCCcHHHHHHHcCCCCHHHHHHH-HHHHHH
Confidence 5888999 9988753 211 223456788999999995 555554 477774
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.26 E-value=1.4e-14 Score=151.75 Aligned_cols=164 Identities=19% Similarity=0.184 Sum_probs=111.5
Q ss_pred CCceeeeeeeEEEeCC-------eEEEEECCCCCcHHHHHHHHhCCC----CCCccEEEECCeeCCc---ccccCceEEE
Q 007383 51 PPTYILKNVSLTAYPS-------QILAIVGPSGAGKSTLLDILSART----SPTNGTILLNSSPIKP---SSFRKLSAYV 116 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~G-------e~~ailG~nGaGKTTLL~~l~g~~----~~~~G~I~~~g~~~~~---~~~~~~i~yv 116 (605)
+.+.+++++++.+++| +.++|.||||+|||||+++|+|.+ .+++|.+..++.++.. ...++.+.++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456899999999887 899999999999999999999987 5677877766655421 1124568999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEE
Q 007383 117 PQHDACIPSLTVYETFLFSARLLVPK----TSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVL 192 (605)
Q Consensus 117 ~Q~~~l~~~lTv~e~l~~~~~~~~~~----~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~il 192 (605)
.|.+.+.+ ++.|++.......... .....+.++..+..+++.. ..+. +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-~~~Ls~~l~sR~~l~---------- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-SGLLSSPLRSRFGII---------- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-GGGSCHHHHTTCSEE----------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-cccCCHHHHHhcCce----------
Confidence 99887765 7888885443322111 1222344555556666654 4455 489999999998655
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCC
Q 007383 193 LLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTID 240 (605)
Q Consensus 193 lLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d 240 (605)
.+||+.+..++.++|++.++..+ +.|+++ .+..+++
T Consensus 175 ------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~ 210 (334)
T 1in4_A 175 ------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAK 210 (334)
T ss_dssp ------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHH
T ss_pred ------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHH
Confidence 78888899999999999876655 357654 3444554
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.24 E-value=7.2e-16 Score=149.61 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=84.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCC-------------CCccEEEECCeeC---CcccccCceEEEcCCCCCCCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTS-------------PTNGTILLNSSPI---KPSSFRKLSAYVPQHDACIPSLT 127 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~-------------~~~G~I~~~g~~~---~~~~~~~~i~yv~Q~~~l~~~lT 127 (605)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.+. +...+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 5899999999999999999999999875 45565 355432 122233222 2332221 123
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHH----HHHHHH-HHhhCCCEEEEeCCCCCCC
Q 007383 128 VYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERR----RVSIGL-SLLHDPAVLLLDEPTSGLD 202 (605)
Q Consensus 128 v~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerq----Rv~ia~-aL~~~P~illLDEPtsgLD 202 (605)
+.+|+ + +.+ ++.++++++.-.. ...+.. + .|-++ ++ .++ +++.+|++++|||+|+++|
T Consensus 76 ~~~n~-~-----g~~----~~~i~~~~~~~~~-~~~~~~----~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-Y-----GTS----KEAVRAVQAMNRI-CVLDVD----L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-E-----EEE----HHHHHHHHHTTCE-EEEECC----H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-C-----CCC----HHHHHHHHHcCCc-EEEECC----H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 32322 1 111 1223333332110 000000 0 11111 12 445 6778888889999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeC
Q 007383 203 SRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSK 247 (605)
Q Consensus 203 ~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~ 247 (605)
..+...|.+.|.+..++ +...|.+ ..+|+++++++
T Consensus 139 ~~~e~~i~~~l~~~~~~-----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD-----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CSCHHHHHHHHHHHHHH-----TTGGGST-----TTCSEEEECSS
T ss_pred CCCHHHHHHHHHHHHHH-----HHHhhcc-----CCceEEEECCC
Confidence 99999999999887653 2334621 56899887753
No 145
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=2.8e-14 Score=152.20 Aligned_cols=169 Identities=13% Similarity=0.175 Sum_probs=119.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhC------------CCCCCccEEEECCeeCCc----ccccCce---EEEcCCCCC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSA------------RTSPTNGTILLNSSPIKP----SSFRKLS---AYVPQHDAC 122 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g------------~~~~~~G~I~~~g~~~~~----~~~~~~i---~yv~Q~~~l 122 (605)
.+++|+.++|+|+||||||||+|+|+| ...|+.|.|.++|..++. ..-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 456789999999854321 0112222 467788888
Q ss_pred CCCCCHHHHH--HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCC
Q 007383 123 IPSLTVYETF--LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDP--AVLLLDEPT 198 (605)
Q Consensus 123 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P--~illLDEPt 198 (605)
.+..+..|++ .|...+.. ++.++..++..+ +..+ ..+||+. +| +++++|||+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~---------~d~il~Vvd~~~--d~~i-~~v~~~~------------dP~~di~ildeel 151 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA---------VDAIYQVVRAFD--DAEI-IHVEGDV------------DPIRDLSIIVDEL 151 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT---------CSEEEEEEECCC--TTCS-SCCSSSS------------CHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH---------HHHHHHHHhccc--ccee-eeecccc------------Ccchhhhhchhhh
Confidence 8877776655 33322211 001111111111 2232 4466653 89 999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-HhcCCcEEEEEeCCCChHHHhcCCeEE-EEeCC-eEEEecChhh
Q 007383 199 SGLDSRSAFNVMQTLKSI-SASRHRTVILSIHQPSFKILSTIDRIL-LLSKG-SVVHHGTLAS 258 (605)
Q Consensus 199 sgLD~~~~~~i~~~L~~l-~~~~g~tii~~~H~~~~~i~~~~d~v~-~l~~G-~iv~~g~~~~ 258 (605)
.++|+......++.+++. ++ .|.||+ +|+.. ++.+++|++. +|.+| ++++.|+.++
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 999999999999999998 54 466764 99987 5889999999 99999 8887776543
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.19 E-value=9.8e-13 Score=135.87 Aligned_cols=116 Identities=13% Similarity=0.157 Sum_probs=69.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE---CCeeCCcc-cc-cCceEEEcCCCCCCC----CCCHHHH
Q 007383 61 LTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILL---NSSPIKPS-SF-RKLSAYVPQHDACIP----SLTVYET 131 (605)
Q Consensus 61 ~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~---~g~~~~~~-~~-~~~i~yv~Q~~~l~~----~lTv~e~ 131 (605)
+++.+|++++|+||||||||||+|+|+|..++.+|+|.+ +|+..+.. .. +..+||++|++.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 456789999999999999999999999999999999999 88776421 22 222799999987665 6899 88
Q ss_pred HH--HHH------hc--CC-CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 007383 132 FL--FSA------RL--LV-PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRR 178 (605)
Q Consensus 132 l~--~~~------~~--~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqR 178 (605)
+. |.. .+ .. ....+...+++++++.++|.+...... ..++.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-VEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-HHHHHHHhhc
Confidence 83 321 11 11 122234567889999999976544443 5677777763
No 147
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.18 E-value=1.2e-13 Score=134.67 Aligned_cols=159 Identities=19% Similarity=0.137 Sum_probs=89.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPK 142 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 142 (605)
.++|++++|+||||||||||+++|+|+++|. | ..+|+|++++..+.. +..+++..... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~~-~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G---------------LPAEVVPMDGFHLDN-RLLEPRGLLPR-KGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T---------------CCEEEEESGGGBCCH-HHHGGGTCGGG-TTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C---------------CceEEEecCCCcCCH-HHHHHhccccc-CCCC
Confidence 4789999999999999999999999999864 2 124555555443321 11222110000 0000
Q ss_pred hhHHHHHHHHHHHHcC----Cc-ccccccccCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007383 143 TSQIDTIITVLLTELR----LA-HLASTRLAHNLSGGERRRVSIG-LSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSI 216 (605)
Q Consensus 143 ~~~~~~~v~~~l~~l~----L~-~~~~~~~~~~LSgGerqRv~ia-~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l 216 (605)
.........+.+..+. +. ...+. ...+|+||+||++++ ++++.++.++++|||.. .++
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~--~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l 144 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDR--ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDL 144 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEET--TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGG
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCc--cccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHH
Confidence 0000111222222221 11 11222 246899999999998 88888888888888841 111
Q ss_pred HhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCeEEEecChhhHHHHH
Q 007383 217 SASRHRTVILSIHQPSFKILSTIDRILLLSKGSVVHHGTLASLETFL 263 (605)
Q Consensus 217 ~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~iv~~g~~~~~~~~~ 263 (605)
.+. --.++++.++.+..+.+...|. +..|. +.+++....
T Consensus 145 ~~~-~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 145 TAI-WDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GGT-CSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred HHh-cCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 221 1367778887665456666662 34453 455555443
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.17 E-value=7.2e-12 Score=136.72 Aligned_cols=182 Identities=11% Similarity=0.075 Sum_probs=116.7
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCeeCCcccccCc-eEEEcCCCCCCCCCCHHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG-TILLNSSPIKPSSFRKL-SAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G-~I~~~g~~~~~~~~~~~-i~yv~Q~~~l~~~lTv~e 130 (605)
-..|+++.+-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+.+...+.++ .+...+ ... +
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 3578888888999999999999999999999999887654334 44443333222111111 000000 000 0
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC------
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEPTSGLD------ 202 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEPtsgLD------ 202 (605)
.+. .+.-..+..+++.+.++.++..+..... ..++|.+|.+ +.++.++ .+|+++++|+++...+
T Consensus 262 ~l~-----~g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~ 333 (454)
T 2r6a_A 262 NLR-----TGKLTPEDWGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKE 333 (454)
T ss_dssp HHH-----TSCCCHHHHHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC---
T ss_pred HHh-----cCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCC
Confidence 110 0111122334455556655443333222 3679999987 5667776 6899999999998774
Q ss_pred --HHHHHHHHHHHHHHHhcCCcEEEEEeC---------C--CC-------hHHHhcCCeEEEEeCCeE
Q 007383 203 --SRSAFNVMQTLKSISASRHRTVILSIH---------Q--PS-------FKILSTIDRILLLSKGSV 250 (605)
Q Consensus 203 --~~~~~~i~~~L~~l~~~~g~tii~~~H---------~--~~-------~~i~~~~d~v~~l~~G~i 250 (605)
.....++.+.|++++++.|.+||+++| + |. ..+.+.+|.|++|++++.
T Consensus 334 ~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 334 NRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 334477888899999888999999999 3 43 036778999999987654
No 149
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.15 E-value=4.2e-13 Score=139.06 Aligned_cols=127 Identities=16% Similarity=0.128 Sum_probs=89.7
Q ss_pred eeeeeeeEEE-------------------eCCeEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEE---CCeeCCcccc
Q 007383 54 YILKNVSLTA-------------------YPSQILAIVGPSGAGKSTLLDILSARTS--PTNGTILL---NSSPIKPSSF 109 (605)
Q Consensus 54 ~iL~~vs~~i-------------------~~Ge~~ailG~nGaGKTTLL~~l~g~~~--~~~G~I~~---~g~~~~~~~~ 109 (605)
++++++++.+ ++|+++||+||||||||||+++|+|++. |++|+|.+ +|..... ..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QV 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HH
Confidence 4788999887 8999999999999999999999999988 99999999 8876532 23
Q ss_pred cCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCC
Q 007383 110 RKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDP 189 (605)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P 189 (605)
++.+|++ |+..+++.+|+.+++.+...+..... .+. .+. -..+. .+|+..+.+.+.+|
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--------------~i~----~P~-~~~~~--~~~~~~~~~~~~~~ 185 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--------------NVT----APV-YSHLI--YDVIPDGDKTVVQP 185 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS--------------CEE----ECC-EETTT--TEECTTCCEEEC-C
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC--------------cee----ccc-ccccc--cCcccccceecCCC
Confidence 4567888 87777888999999988765522110 000 000 01111 12222222345678
Q ss_pred CEEEEeCCCCCCCH
Q 007383 190 AVLLLDEPTSGLDS 203 (605)
Q Consensus 190 ~illLDEPtsgLD~ 203 (605)
+++++|.|....|.
T Consensus 186 ~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 186 DILILEGLNVLQSG 199 (308)
T ss_dssp CEEEEECTTTTCCG
T ss_pred CEEEECchhhCCCc
Confidence 99999999998874
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.14 E-value=8.9e-15 Score=149.22 Aligned_cols=143 Identities=13% Similarity=0.183 Sum_probs=99.1
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc---cccCceEEEcCCC-CCCCCCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS---SFRKLSAYVPQHD-ACIPSLT 127 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~---~~~~~i~yv~Q~~-~l~~~lT 127 (605)
...+++++++.+++| ++|.||||||||||+++|+|...+ |.|.++|.++... ..++.+++++|+. ...|.++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 356899999999999 999999999999999999999876 7999999876321 2334577888764 4555566
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--------
Q 007383 128 VYETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS-------- 199 (605)
Q Consensus 128 v~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPts-------- 199 (605)
+.|++...... +.. ... . .+....++. ..+|||||+||+.|++++..+|++| ||++.
T Consensus 108 ~~Deid~~~~~----r~~--~~~----~--~~~~~~~~~-l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~ 172 (274)
T 2x8a_A 108 FFDEVDALCPR----RSD--RET----G--ASVRVVNQL-LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKT 172 (274)
T ss_dssp EEETCTTTCC---------------------CTTHHHHH-HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEE
T ss_pred eeehhhhhhcc----cCC--Ccc----h--HHHHHHHHH-HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeE
Confidence 66666532211 000 000 0 122223334 4789999999999999999999985 99864
Q ss_pred ----CCCHHHHHHHHHHH
Q 007383 200 ----GLDSRSAFNVMQTL 213 (605)
Q Consensus 200 ----gLD~~~~~~i~~~L 213 (605)
--|...+.+|++.+
T Consensus 173 i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EECCSCCHHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHH
Confidence 23666666665543
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.10 E-value=4e-12 Score=125.94 Aligned_cols=171 Identities=11% Similarity=0.062 Sum_probs=91.9
Q ss_pred eeeeee-eEEEeCCeEEEEECCCCCcHHHHHHHH-hCCCCCCccEEEECCeeCCccccc---CceEEEcCCCCCCCCCCH
Q 007383 54 YILKNV-SLTAYPSQILAIVGPSGAGKSTLLDIL-SARTSPTNGTILLNSSPIKPSSFR---KLSAYVPQHDACIPSLTV 128 (605)
Q Consensus 54 ~iL~~v-s~~i~~Ge~~ailG~nGaGKTTLL~~l-~g~~~~~~G~I~~~g~~~~~~~~~---~~i~yv~Q~~~l~~~lTv 128 (605)
..|+++ .+-+++|++++|.||||||||||+..+ .+..+...+.++++++.. ...+. +.+|+.+|+......+++
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~~~~~~l~~ 88 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPYEEKGMFAM 88 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence 356776 778999999999999999999995544 444333334444443321 11111 112222221000000000
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC--CHH
Q 007383 129 YETFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEPTSGL--DSR 204 (605)
Q Consensus 129 ~e~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEPtsgL--D~~ 204 (605)
.+ ... ..++.....+... ..-+....+....++.++ .+|+++++|||++.+ |+.
T Consensus 89 ~~-------~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~ 146 (247)
T 2dr3_A 89 VD-------AFT--------------AGIGKSKEYEKYI-VHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPA 146 (247)
T ss_dssp EE-------CST--------------TTTCC--CCCSCB-CSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGG
T ss_pred Ee-------cch--------------hhccccccccccc-ccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHH
Confidence 00 000 0000000000000 000111222233333333 589999999999988 665
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCChH-------HHhcCCeEEEEeC
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPSFK-------ILSTIDRILLLSK 247 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~~~-------i~~~~d~v~~l~~ 247 (605)
...+.+..|.+++++.|.|||+++|..... +.+.+|.++.|+.
T Consensus 147 ~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 147 MARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 566777777777777789999999987631 4577899999974
No 152
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.07 E-value=7.1e-15 Score=145.61 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=23.5
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh-CCCCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILS-ARTSP 92 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~-g~~~~ 92 (605)
..+..+++|+++++|++++|+||||||||||+++|+ |+.++
T Consensus 13 ~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ---------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 346789999999999999999999999999999999 99865
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.06 E-value=6e-11 Score=122.63 Aligned_cols=113 Identities=17% Similarity=0.300 Sum_probs=83.3
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc
Q 007383 59 VSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL 138 (605)
Q Consensus 59 vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 138 (605)
+++..++|++++|+|||||||||+++.|++.+.+..|+|.+.+.+.... + ..|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~------~-------------a~eq------- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA------A-------------AIEQ------- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH------H-------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH------H-------------HHHH-------
Confidence 4555688999999999999999999999999988888998877653110 0 1111
Q ss_pred CCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007383 139 LVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRV---SIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKS 215 (605)
Q Consensus 139 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv---~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 215 (605)
+..+.+.+++.. ....|+|+.+++ ++++++..+|+++++|||.. ......+++.|++
T Consensus 151 -----------L~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~ 210 (306)
T 1vma_A 151 -----------LKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRK 210 (306)
T ss_dssp -----------HHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHH
T ss_pred -----------HHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHH
Confidence 223445556642 246789999999 89999999999999999974 3445566666666
Q ss_pred HH
Q 007383 216 IS 217 (605)
Q Consensus 216 l~ 217 (605)
+.
T Consensus 211 l~ 212 (306)
T 1vma_A 211 VH 212 (306)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.04 E-value=6e-12 Score=121.39 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=51.9
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHH
Q 007383 60 SLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLF 134 (605)
Q Consensus 60 s~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 134 (605)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ...++.++|++|++..++.+++.+++..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 56778999999999999999999999999974 57777765432 1234568999998877776666665443
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.03 E-value=7e-12 Score=137.64 Aligned_cols=179 Identities=16% Similarity=0.113 Sum_probs=107.8
Q ss_pred eeeEEEeCCeEEEEECCCCCcHHHHHHHHhC--CCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHH
Q 007383 58 NVSLTAYPSQILAIVGPSGAGKSTLLDILSA--RTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFS 135 (605)
Q Consensus 58 ~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g--~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 135 (605)
.+++.+.++..++|.|++||||||+++.|.. +..++.|++.+.+.+.+...+... .+-+++.. +|.++...+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~----~~lPhl~~--~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY----EGIPHLLT--EVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG----TTCTTBSS--SCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh----ccCCcccc--eeecCHHHH
Confidence 4778888999999999999999999999875 455566777776666532222110 00011110 111222211
Q ss_pred HhcCCCChhHHHHHHHHHHHHcCCcccccc--cccCCCCHHHHHHH----------HHHHHHhhCCC-EEEEeCCCCCCC
Q 007383 136 ARLLVPKTSQIDTIITVLLTELRLAHLAST--RLAHNLSGGERRRV----------SIGLSLLHDPA-VLLLDEPTSGLD 202 (605)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~--~~~~~LSgGerqRv----------~ia~aL~~~P~-illLDEPtsgLD 202 (605)
...+....++.++| .++++..|+.+..+. ++...+|+||+||. .+++++...|. ++++||++.-+|
T Consensus 233 ~~~L~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~ 311 (512)
T 2ius_A 233 ANALRWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMM 311 (512)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHh
Confidence 11111112345555 367888888765422 22346889988753 34556677898 789999999888
Q ss_pred HHHHHHHHHHHHHHHh---cCCcEEEEEeCCCChH-----HH-hcCCeEEE
Q 007383 203 SRSAFNVMQTLKSISA---SRHRTVILSIHQPSFK-----IL-STIDRILL 244 (605)
Q Consensus 203 ~~~~~~i~~~L~~l~~---~~g~tii~~~H~~~~~-----i~-~~~d~v~~ 244 (605)
.. ...+.+.+.++++ ..|.++|++||+|+.+ +. ++.+||.+
T Consensus 312 ~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 312 TV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred hh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 43 3445555555543 3477999999999832 23 44456554
No 156
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.01 E-value=7.8e-10 Score=113.76 Aligned_cols=127 Identities=16% Similarity=0.143 Sum_probs=89.9
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHH
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSA 136 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 136 (605)
++++++ +|++++++|+||+||||++..|++.+.+..|+|.+.+.+...... + +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~------------------~-~ql~--- 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA------------------R-EQLR--- 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH------------------H-HHHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH------------------H-HHHH---
Confidence 678887 999999999999999999999999998888999988766421100 0 1110
Q ss_pred hcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHH
Q 007383 137 RLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEP-TSGLDSRSAFNVMQTLKS 215 (605)
Q Consensus 137 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEP-tsgLD~~~~~~i~~~L~~ 215 (605)
.+.+..++...... .+-+-.+.+|.+++.+...+++++|+||| +.|+|.....++.+..+.
T Consensus 147 ---------------~~~~~~~l~~~~~~---~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 147 ---------------LLGEKVGVPVLEVM---DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp ---------------HHHHHHTCCEEECC---TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred ---------------HhcccCCeEEEEcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 11233455322110 12234566788999988899999999999 999999888888888776
Q ss_pred HHhcCCcEEEEE
Q 007383 216 ISASRHRTVILS 227 (605)
Q Consensus 216 l~~~~g~tii~~ 227 (605)
+. ...+++++
T Consensus 209 ~~--~~~~~lv~ 218 (295)
T 1ls1_A 209 LG--PDEVLLVL 218 (295)
T ss_dssp HC--CSEEEEEE
T ss_pred cC--CCEEEEEE
Confidence 63 23344444
No 157
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.99 E-value=1.4e-10 Score=126.50 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=49.1
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCC
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIK 105 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~ 105 (605)
..+|+|+|+++++ |+++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 3479999999999 999999999999999999999999999999999998764
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.98 E-value=5.5e-10 Score=117.60 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=90.1
Q ss_pred eeeeee--EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 55 ILKNVS--LTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 55 iL~~vs--~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
-|+.+- +-+++|+++.|.||||+|||||+..++.......|. +.|+.-+....+ .
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~----------------vlyi~~E~~~~~------~- 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI----------------AAFIDAEHALDP------E- 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC----------------EEEEESSCCCCH------H-
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe----------------EEEEECCCCcCH------H-
Confidence 355443 368999999999999999999988877543322222 334433321110 0
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC---------
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHD--PAVLLLDEPTSGL--------- 201 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~--P~illLDEPtsgL--------- 201 (605)
.. +.+|+... +-.+....+. .+-+.++++++.+ |+++++|||++.+
T Consensus 105 -~a-------------------~~lG~~~~-~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 105 -YA-------------------KKLGVDTD-SLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp -HH-------------------HHTTCCGG-GCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred -HH-------------------HHcCCCHH-HeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 01 11222110 0001111233 2345677888755 9999999999998
Q ss_pred -CH---HHHHHHHHHHHHH---HhcCCcEEEEEeCCCCh---------------HHHhcCCeEEEEeCCeEEEecC
Q 007383 202 -DS---RSAFNVMQTLKSI---SASRHRTVILSIHQPSF---------------KILSTIDRILLLSKGSVVHHGT 255 (605)
Q Consensus 202 -D~---~~~~~i~~~L~~l---~~~~g~tii~~~H~~~~---------------~i~~~~d~v~~l~~G~iv~~g~ 255 (605)
|+ ..++.+.+.++++ +++.|.|||+++|..+. .+...+|.++.+.+++++..|+
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223444444444 45668999999996531 1456789888888777655443
No 159
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.96 E-value=4.3e-10 Score=115.75 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=89.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCh
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKT 143 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 143 (605)
++|++++++||||+||||+++.|++.+.+.+| +.+.++.+|.. ..++.|.+...+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~~----- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH---------------KKIAFITTDTY---RIAAVEQLKTYAEL----- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC---------------CCEEEEECCCS---STTHHHHHHHHHTT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------------CEEEEEecCcc---cchHHHHHHHHHHh-----
Confidence 57999999999999999999999999887667 23556665542 24566666543321
Q ss_pred hHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCC
Q 007383 144 SQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSIS--ASRH 221 (605)
Q Consensus 144 ~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~--~~~g 221 (605)
.|+... ...+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+. ...+
T Consensus 160 -------------~gl~~~------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~ 215 (296)
T 2px0_A 160 -------------LQAPLE------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQ 215 (296)
T ss_dssp -------------TTCCCC------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEE
T ss_pred -------------cCCCeE------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCe
Confidence 222211 01122 22344555 45999999999 99999876655554443332 1123
Q ss_pred cEEEE-EeCCCChHHHhcCCeEEEEeCCeEEEe
Q 007383 222 RTVIL-SIHQPSFKILSTIDRILLLSKGSVVHH 253 (605)
Q Consensus 222 ~tii~-~~H~~~~~i~~~~d~v~~l~~G~iv~~ 253 (605)
.++++ ++|+.+ ++.+.++++..+..+.++..
T Consensus 216 ~~lVl~at~~~~-~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 216 SFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp EEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEE
T ss_pred EEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEe
Confidence 34444 378765 57777777666666666653
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.93 E-value=8.1e-11 Score=112.62 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=76.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCeeCCc-----ccccCceEEEcCCCCC-CCCCCHHH
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSP-----------TNGTILLNSSPIKP-----SSFRKLSAYVPQHDAC-IPSLTVYE 130 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~-----------~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l-~~~lTv~e 130 (605)
.++|+|+||||||||++.++|...+ .+|+|.++|+++.. ...++..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 47899999976421 1111222222221000 00011111
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcC--C--cccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELR--L--AHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSA 206 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~--L--~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~ 206 (605)
..... +.+......+++.+... . .... ++ .+|..-..+++.+|++++.+|+++++| ||++|....
T Consensus 111 ~~~~~------s~~~~~~~~~~~~~~~~~~~~i~~v~-nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IAKHL------TYENVERWLKELRDHADSNIVIMLVG-NK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TTCHH------HHHTHHHHHHHHHHHSCTTCEEEEEE-EC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CcCHH------HHHHHHHHHHHHHHhcCCCCcEEEEE-EC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 00000 00000111111111100 0 0001 11 123322234578899999999999999 999999999
Q ss_pred HHHHHHHHHH
Q 007383 207 FNVMQTLKSI 216 (605)
Q Consensus 207 ~~i~~~L~~l 216 (605)
.++++.|.+.
T Consensus 180 ~~l~~~l~~~ 189 (191)
T 1oix_A 180 EAAFQTILTE 189 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.90 E-value=1.4e-11 Score=139.05 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=103.0
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCc-cEEEECCeeCCcccccCceEEEcCCC---------
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTN-GTILLNSSPIKPSSFRKLSAYVPQHD--------- 120 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~-G~I~~~g~~~~~~~~~~~i~yv~Q~~--------- 120 (605)
+...+++++++.+++|+.++|+||||+|||||+++|++..++.. |.+.+++.+.+ .....++++++..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~--~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED--ENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC--TTSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc--ccCCcEEEEecchHHHHHHHHH
Confidence 45678999999999999999999999999999999999998866 88988887654 2345688887643
Q ss_pred -------------CCCCCCCHHHHHHHHHhc-CCCCh-hHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHH
Q 007383 121 -------------ACIPSLTVYETFLFSARL-LVPKT-SQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSL 185 (605)
Q Consensus 121 -------------~l~~~lTv~e~l~~~~~~-~~~~~-~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL 185 (605)
..+..+++.+|+.....- .+.+. .+... ..-+.+|..+..... .+++|+|++|++..++..
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~---~~~~L~G~~~~~~~~-~g~~~~g~~~~i~~g~~~ 198 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGA---HAGALLGDVRHDPFQ-SGGLGTPAHERVEPGMIH 198 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTC---CHHHHHCEECCCCC-----CCCCGGGGEECCHHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCC---CHHhcCceEEechhh-cCCccccccccccCceee
Confidence 111222222222110000 00000 00000 011222322211122 267999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007383 186 LHDPAVLLLDEPTSGLDSRSAFNVMQTLKS 215 (605)
Q Consensus 186 ~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 215 (605)
..++.+|||||... |++..+..+.+.|.+
T Consensus 199 ~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 199 RAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999988 899988888888764
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.81 E-value=1.6e-12 Score=132.29 Aligned_cols=121 Identities=12% Similarity=0.144 Sum_probs=84.4
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc---ccccCceEEEcCCCC-CCCCCCH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRKLSAYVPQHDA-CIPSLTV 128 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~~lTv 128 (605)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...++.+++++|+.. ..+.+++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEe
Confidence 45789999999999 99999999999999999999875 7899998876421 122344667777643 4566777
Q ss_pred HHHHHHHHhcCCC----ChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCE
Q 007383 129 YETFLFSARLLVP----KTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAV 191 (605)
Q Consensus 129 ~e~l~~~~~~~~~----~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~i 191 (605)
.|++......... ..++.++.+.++ ...|||||+||+.+++++..+|++
T Consensus 138 iDeid~l~~~~~~~~~~~~~~~~~~~~~l--------------l~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 138 IDEIDAVGRKRGSGVGGGNDEREQTLNQL--------------LVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EETHHHHHCC--------CHHHHHHHHHH--------------HHHHTTCCTTCCEEEEEEESCTTS
T ss_pred hhhhHhhhcccccccCCcchHHHHHHHHH--------------HHHHhCCCCCCCEEEEEecCCchh
Confidence 7877533221110 111222222222 246899999999999999999976
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.80 E-value=1.4e-10 Score=114.67 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=42.7
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-----------ccccCceEEEcCC
Q 007383 60 SLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-----------SSFRKLSAYVPQH 119 (605)
Q Consensus 60 s~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-----------~~~~~~i~yv~Q~ 119 (605)
++++++ ++++|+|||||||||||++|+|.+.|++|+|.++|.++.. ...++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 8999999999999999999999999999999999987621 1235678999984
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.78 E-value=1.9e-09 Score=113.36 Aligned_cols=158 Identities=10% Similarity=0.063 Sum_probs=87.8
Q ss_pred eeeeee--EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EECCeeCCcccccCceEEEcCCCCCCCCCCHHHH
Q 007383 55 ILKNVS--LTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI-LLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 55 iL~~vs--~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I-~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
-|+.+- +=+++|+++.|.||||+|||||+..+++...+..|.+ +++++........+.+|+.+|+..+....++.+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~ 127 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQA 127 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHH
Confidence 455543 3689999999999999999999999998876666655 5555433222223345555554333333344443
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCCc----cccccccc-CCCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTELRLA----HLASTRLA-HNLSG--GERRRVSIGLSLLHDPAVLLLDEPTSGLDSR 204 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~~-~~LSg--GerqRv~ia~aL~~~P~illLDEPtsgLD~~ 204 (605)
+... +.+++..+.+ +......+ .+++| |++|+...||++.
T Consensus 128 l~~~---------------~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la------------------ 174 (356)
T 3hr8_A 128 LEIV---------------DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS------------------ 174 (356)
T ss_dssp HHHH---------------HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH------------------
T ss_pred HHHH---------------HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH------------------
Confidence 3221 1111110000 00000000 11222 4444444444443
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCC---------------hHHHhcCCeEEEEeCC
Q 007383 205 SAFNVMQTLKSISASRHRTVILSIHQPS---------------FKILSTIDRILLLSKG 248 (605)
Q Consensus 205 ~~~~i~~~L~~l~~~~g~tii~~~H~~~---------------~~i~~~~d~v~~l~~G 248 (605)
+++..|++++++.+.+||++.|-.. ..+...+|-++.+.++
T Consensus 175 ---~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 175 ---QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp ---HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred ---HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence 5677778888888999999887621 0134567888888763
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.75 E-value=3e-12 Score=128.37 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=85.2
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc---ccccCceEEEcCCC-CCCCCCCH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP---SSFRKLSAYVPQHD-ACIPSLTV 128 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~-~l~~~lTv 128 (605)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.++.. ...++.+++++|+. ...+.+++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 45899999999999 99999999999999999999875 7899998865421 12234466777764 24566677
Q ss_pred HHHHHHHHhcCC----CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 007383 129 YETFLFSARLLV----PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEP 197 (605)
Q Consensus 129 ~e~l~~~~~~~~----~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEP 197 (605)
.|++........ ...++..+.+.++ ...|||||+||+.+++++..+|++ +|++
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~~~l--------------l~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTLNQL--------------LVEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EETHHHHHC---------CHHHHHHHHHH--------------HHHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred ehhhhhhhcccCccccccchHHHHHHHHH--------------HHHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 777743322111 0111222222222 246789999999999999999986 4554
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.68 E-value=2.1e-09 Score=113.70 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=88.5
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHhCCCC-----------CCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHH---
Q 007383 65 PSQI-LAIVGPSGAGKSTLLDILSARTS-----------PTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVY--- 129 (605)
Q Consensus 65 ~Ge~-~ailG~nGaGKTTLL~~l~g~~~-----------~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~--- 129 (605)
+|-. ++|+|++|||||||+|.|+|... ++.|.|.++|.++. +....|++.|.+.. .|.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~----lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQ----IVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGG----GHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHH----HHHHHH
Confidence 3444 99999999999999999999876 46789999886542 22345665543221 121
Q ss_pred HHHHHHH--hc----CCC--Ch---hHHHHHHHHHHHHcCCcccc----cccccCCCCHHHHHHHHHH----HHH-hhCC
Q 007383 130 ETFLFSA--RL----LVP--KT---SQIDTIITVLLTELRLAHLA----STRLAHNLSGGERRRVSIG----LSL-LHDP 189 (605)
Q Consensus 130 e~l~~~~--~~----~~~--~~---~~~~~~v~~~l~~l~L~~~~----~~~~~~~LSgGerqRv~ia----~aL-~~~P 189 (605)
..+.... .. ... .. .+..+.+.++++.+++.+.. .++ ...+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 1111110 11 011 11 12233456778887765432 233 256788888988887 454 3344
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007383 190 AVLLLDEPTSGLDSRSAFNVMQTLKSISAS 219 (605)
Q Consensus 190 ~illLDEPtsgLD~~~~~~i~~~L~~l~~~ 219 (605)
++ +|+|++|......+.+.|.++...
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 54 899999999999999999887543
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.65 E-value=5.1e-09 Score=100.40 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007383 179 VSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSIS 217 (605)
Q Consensus 179 v~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~ 217 (605)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.59 E-value=1.4e-10 Score=123.06 Aligned_cols=139 Identities=12% Similarity=0.028 Sum_probs=84.2
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCC-CCCCCCHHHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDA-CIPSLTVYET 131 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~ 131 (605)
..+++++|+.+++|++++|.||||||||||+++|+|. .+|++..-+.+ ...++..+|+++|... ++++.+....
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999985 46777652111 1222223667777653 3333332221
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHH---cCCc-------------ccccccccCCCCHHHHHHHHHHHHHhhCCCEEE-E
Q 007383 132 FLFSARLLVPKTSQIDTIITVLLTE---LRLA-------------HLASTRLAHNLSGGERRRVSIGLSLLHDPAVLL-L 194 (605)
Q Consensus 132 l~~~~~~~~~~~~~~~~~v~~~l~~---l~L~-------------~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ill-L 194 (605)
+. ..+...........+.+.++. +.+. ...+.. ...+++|+++|+..+.+++.+|++++ |
T Consensus 231 ~~--r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~-~~~l~~~~~~rl~~~~~l~~~pDLliyL 307 (377)
T 1svm_A 231 ES--RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMN-EYSVPKTLQARFVKQIDFRPKDYLKHCL 307 (377)
T ss_dssp TT--TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEEC-SCCCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred HH--hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChh-HHhhcHHHHHHHhhhhccCCCCCeEEEE
Confidence 10 000000000011223333321 0011 011223 35789999999998888888999877 9
Q ss_pred eCCCC
Q 007383 195 DEPTS 199 (605)
Q Consensus 195 DEPts 199 (605)
|+|+.
T Consensus 308 d~~~~ 312 (377)
T 1svm_A 308 ERSEF 312 (377)
T ss_dssp HTCTH
T ss_pred eCCHH
Confidence 99987
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.54 E-value=2.6e-09 Score=103.07 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=45.5
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc--cccCceEEEcCCCCCCCCCCHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS--SFRKLSAYVPQHDACIPSLTVYET 131 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (605)
+..+-....++|++++|+||||||||||+++|++.+ |.+.++|.++... ..+...|+++|+....+.+++.++
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 344444667899999999999999999999999986 8899998776321 112235777776444333344443
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.46 E-value=2.9e-07 Score=100.51 Aligned_cols=113 Identities=18% Similarity=0.293 Sum_probs=74.2
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHH
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLF 134 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 134 (605)
.++++++.+++| +.|.||+|+|||||.++|++.... + .-++. ..+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~---------f~~is----------~~~---- 84 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------P---------FFHIS----------GSD---- 84 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------C---------EEEEE----------GGG----
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------C---------eeeCC----------HHH----
Confidence 556677777777 889999999999999999984310 0 00110 000
Q ss_pred HHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHH
Q 007383 135 SARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEP----------TSGLDSR 204 (605)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEP----------tsgLD~~ 204 (605)
+ .+..+ + .|++++|-.++++....|.+||+||+ +.|.|..
T Consensus 85 ---~------------------------~~~~~-g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~ 134 (476)
T 2ce7_A 85 ---F------------------------VELFV-G--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDE 134 (476)
T ss_dssp ---T------------------------TTCCT-T--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CH
T ss_pred ---H------------------------HHHHh-c--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHH
Confidence 0 00000 1 26778888899999999999999999 4467777
Q ss_pred HHHHHHHHHHHHH---hcCCcEEEEEeCCCC
Q 007383 205 SAFNVMQTLKSIS---ASRHRTVILSIHQPS 232 (605)
Q Consensus 205 ~~~~i~~~L~~l~---~~~g~tii~~~H~~~ 232 (605)
....+.++|..+- ...+..||.+||+++
T Consensus 135 ~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 135 REQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6666677776663 234678999999975
No 171
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.45 E-value=7.7e-08 Score=90.80 Aligned_cols=119 Identities=15% Similarity=0.103 Sum_probs=67.5
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe---------eCCcccccCceEEEcCCCCC--CC-
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS---------PIKPSSFRKLSAYVPQHDAC--IP- 124 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~---------~~~~~~~~~~i~yv~Q~~~l--~~- 124 (605)
+++++.+.+| +++|+||||||||||+++|.+.+.+..|...-.+. .......+..+..++|++.. .+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7899999999 99999999999999999999988776554322221 10001233457888887531 11
Q ss_pred --CCCHHHHHHHH-Hh-cCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHH
Q 007383 125 --SLTVYETFLFS-AR-LLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVS 180 (605)
Q Consensus 125 --~lTv~e~l~~~-~~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ 180 (605)
.+++...+.-. .. ..-.......+.+.++++.+++....- .-++.||.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~----~~~~qg~~~~l~ 152 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY----NIVLQGDITKFI 152 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT----TEECTTCTTHHH
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCC----EEEEcccHHHHH
Confidence 12332211000 00 000011123456778888888865321 235555555543
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.43 E-value=1.5e-07 Score=98.26 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=87.1
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
-.-|+.+.+-+++|+++.|.|++|+|||||+.-++....... ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g----------------~~Vl~fSl------Ems~~ql- 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD----------------RGVAVFSL------EMSAEQL- 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT----------------CEEEEEES------SSCHHHH-
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----------------CeEEEEeC------CCCHHHH-
Confidence 346777777899999999999999999999988875432111 12344331 2333322
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~ 212 (605)
..++......+++.+.. .+.||.+|++|+..|...+.++++++.|+|... ..++.+.
T Consensus 90 --------------~~Rlls~~~~v~~~~l~----~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ 146 (338)
T 4a1f_A 90 --------------ALRALSDLTSINMHDLE----SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQ 146 (338)
T ss_dssp --------------HHHHHHHHHCCCHHHHH----HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHH
T ss_pred --------------HHHHHHHhhCCCHHHHh----cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHH
Confidence 22222222222222222 257999999999999999999999999998654 3366677
Q ss_pred HHHHHhcC-CcEEEEEeC
Q 007383 213 LKSISASR-HRTVILSIH 229 (605)
Q Consensus 213 L~~l~~~~-g~tii~~~H 229 (605)
++++.++. |..+|++-|
T Consensus 147 ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 147 LRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEec
Confidence 77776665 677777754
No 173
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.37 E-value=2.2e-08 Score=100.35 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=49.9
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh---CCCCCCccEEE--------ECCeeCCc----ccccCceEEEcC
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILS---ARTSPTNGTIL--------LNSSPIKP----SSFRKLSAYVPQ 118 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~---g~~~~~~G~I~--------~~g~~~~~----~~~~~~i~yv~Q 118 (605)
.++++.+ ++|++++|+|||||||||++++|+ |+..+++|.+. .+|.++.. ..+++.+++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999999 88887632 245667889887
Q ss_pred CC
Q 007383 119 HD 120 (605)
Q Consensus 119 ~~ 120 (605)
++
T Consensus 95 ~~ 96 (252)
T 4e22_A 95 SQ 96 (252)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 174
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.37 E-value=1e-08 Score=113.93 Aligned_cols=43 Identities=33% Similarity=0.400 Sum_probs=38.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEE-ECCeeC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG-TIL-LNSSPI 104 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G-~I~-~~g~~~ 104 (605)
.+++|++++|+|+||||||||+++|+|++.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999886 785 888654
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.36 E-value=9.2e-08 Score=91.83 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=29.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG 95 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G 95 (605)
++++|++++|+||||||||||+++|+++..|+.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 5789999999999999999999999999966555
No 176
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.34 E-value=1.4e-06 Score=91.75 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=84.8
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhC--CCCCCccEEEECCeeCCc---ccccCceEEEcCCCC-CCCCC
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSA--RTSPTNGTILLNSSPIKP---SSFRKLSAYVPQHDA-CIPSL 126 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g--~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~~l 126 (605)
..+|++++++++ .++|+|++|||||||++.|+| .++..+|.++-....+.. ..-.+..+...+.+. .+...
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 899999999999999999999 456666765433322210 000122333333221 11110
Q ss_pred -CHHHHHHHHHhc-CCC----ChhHHHHHH----HHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 007383 127 -TVYETFLFSARL-LVP----KTSQIDTII----TVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDE 196 (605)
Q Consensus 127 -Tv~e~l~~~~~~-~~~----~~~~~~~~v----~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDE 196 (605)
.+.+.+.-.... .+. +.....-.+ ..-+..+++....+.....+-++.++++..+++..+.+|+++++.-
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 111111100000 000 000000000 0000000000000111012356788999999999999999877774
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC
Q 007383 197 PTSGLDSRSAFNVMQTLKSISASRHRTVILSIH 229 (605)
Q Consensus 197 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H 229 (605)
..+..|..+ ....++++.+...+..+|++.+.
T Consensus 181 ~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 181 SPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred ecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 333445433 45567777776544468877775
No 177
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.31 E-value=3.7e-07 Score=105.66 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEE-eCCCChHHHhcCCeEE
Q 007383 169 HNLSGGERRRVSIGLSLLHDPAVLLLDEPTS-GLDSRSAFNVMQTLKSISASRHRTVILS-IHQPSFKILSTIDRIL 243 (605)
Q Consensus 169 ~~LSgGerqRv~ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~~g~tii~~-~H~~~~~i~~~~d~v~ 243 (605)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+... ..++|+++ ||+++ .+.+++++..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~-~l~~~~~~~~ 263 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAE-KFQRYFNDAP 263 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCH-HHHHHTTSCC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHH-HHHHHhcCCC
Confidence 5689999999999999999999999999996 9998877777777766543 35677775 89876 5777777533
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.31 E-value=1.1e-07 Score=90.51 Aligned_cols=30 Identities=50% Similarity=0.648 Sum_probs=26.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTSPTNG 95 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G 95 (605)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999975433
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.31 E-value=8.3e-08 Score=99.69 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=60.9
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCc-------ccc-----cCceEEE-cCCCC
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKP-------SSF-----RKLSAYV-PQHDA 121 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~-----~~~i~yv-~Q~~~ 121 (605)
+++++++..++|++++|+|+||+||||++..|++.+.+..|+|.+.+.+... ..+ +..+.++ +|...
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3478999999999999999999999999999999998889999998877632 123 4568888 66654
Q ss_pred CCCCCCHHHHHHH
Q 007383 122 CIPSLTVYETFLF 134 (605)
Q Consensus 122 l~~~lTv~e~l~~ 134 (605)
..+..++.+++..
T Consensus 174 ~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 174 ADPASVVFDAIKK 186 (320)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444445555543
No 180
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.30 E-value=3.8e-08 Score=98.66 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=36.0
Q ss_pred eEEEEeE-EEEEecCCCCccccccccCCCCCceeeeeeeEEEeC---CeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 23 KLTGSSI-SYIKSNNSIIPSFIFEACSSKPPTYILKNVSLTAYP---SQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 23 ~l~~~~l-s~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.|+++|+ +++|. +.+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~----------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD----------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec----------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 98872 245699999999999 9999999999999999999999865
No 181
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.28 E-value=9.5e-07 Score=93.00 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=79.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChh
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTS 144 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 144 (605)
..-.++++|++|+|||||++.|+|.... ..+.+.... ...++.+.++... ..+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~------~~~~~~~t~--~~~~~~~~~~~~~-------------~~l------ 218 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE------IASYPFTTR--GINVGQFEDGYFR-------------YQI------ 218 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE------EECCTTCSS--CEEEEEEEETTEE-------------EEE------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc------cCCCCCeee--ceeEEEEEecCce-------------EEE------
Confidence 3457999999999999999999987531 111111111 1123333332110 000
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 007383 145 QIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLD-EPTSGLDSRSAFNVMQTLKSISASRHRT 223 (605)
Q Consensus 145 ~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLD-EPtsgLD~~~~~~i~~~L~~l~~~~g~t 223 (605)
++.-|. .+.. ...+|+||+|++. +.+...++-++++| +|..|+|......+++.+.+... +..
T Consensus 219 ---------~Dt~G~---~~~~-~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~p 282 (357)
T 2e87_A 219 ---------IDTPGL---LDRP-ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLP 282 (357)
T ss_dssp ---------EECTTT---SSSC-STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSC
T ss_pred ---------EeCCCc---cccc-hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCC
Confidence 001121 1222 3678999998876 55555677789999 99999999999888888877642 567
Q ss_pred EEEEe--CCCC
Q 007383 224 VILSI--HQPS 232 (605)
Q Consensus 224 ii~~~--H~~~ 232 (605)
+|++. ||..
T Consensus 283 iilV~NK~Dl~ 293 (357)
T 2e87_A 283 FLVVINKIDVA 293 (357)
T ss_dssp EEEEECCTTTC
T ss_pred EEEEEECcccC
Confidence 88777 7764
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.24 E-value=2.8e-08 Score=95.77 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=44.5
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE--EECCeeC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI--LLNSSPI 104 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I--~~~g~~~ 104 (605)
.....++.+...++|++++|+||||||||||.++|++++. ..|.+ .++|.++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 3456677777789999999999999999999999999987 67887 8887665
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.24 E-value=2.2e-07 Score=89.59 Aligned_cols=137 Identities=14% Similarity=0.179 Sum_probs=77.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChhHHH
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTSQID 147 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~ 147 (605)
+++|+|+|||||||+.+.|+++ |...+++.++ .+.+. + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~-----~~~~~---~-----~~---------------------~ 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV-----AREVV---A-----KD---------------------S 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH-----HHHTT---C-----SS---------------------C
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH-----HHHHc---c-----CC---------------------h
Confidence 6899999999999999999983 4444432211 00000 0 00 0
Q ss_pred HHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 007383 148 TIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILS 227 (605)
Q Consensus 148 ~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~ 227 (605)
..+.++.+.+|... -.+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.+++. .+.+||+.
T Consensus 45 ~~~~~i~~~~g~~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~ 111 (206)
T 1jjv_A 45 PLLSKIVEHFGAQI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFV 111 (206)
T ss_dssp HHHHHHHHHHCTTC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEE
T ss_pred HHHHHHHHHhCHHH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEE
Confidence 11233444555321 13678888999988888887654333 3455666666665555432 24588888
Q ss_pred eCCCChH-HHhcCCeEEEEeCCeEEEecChhhHHHHH
Q 007383 228 IHQPSFK-ILSTIDRILLLSKGSVVHHGTLASLETFL 263 (605)
Q Consensus 228 ~H~~~~~-i~~~~d~v~~l~~G~iv~~g~~~~~~~~~ 263 (605)
+|..... ....+|.+++++ .+++...+..
T Consensus 112 ~~~l~e~~~~~~~d~vi~l~-------~~~e~~~~Rl 141 (206)
T 1jjv_A 112 VPLLIENKLTALCDRILVVD-------VSPQTQLARS 141 (206)
T ss_dssp CTTTTTTTCGGGCSEEEEEE-------CCHHHHHHHH
T ss_pred echhhhcCcHhhCCEEEEEE-------CCHHHHHHHH
Confidence 8976531 256789888875 4555554444
No 184
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.15 E-value=9.5e-09 Score=112.86 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=84.2
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcc---cccCceEEEcCCCC-CCCCCCHH
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPS---SFRKLSAYVPQHDA-CIPSLTVY 129 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~---~~~~~i~yv~Q~~~-l~~~lTv~ 129 (605)
.+++++++.+++| +.|.||||+|||||+++|++... .|.+.++|.++... ...+.+..++|+.. ..+.+.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4688899999999 99999999999999999999875 68899998765321 11233556666643 34445555
Q ss_pred HHHHHHHhcCC----CChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 007383 130 ETFLFSARLLV----PKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS 199 (605)
Q Consensus 130 e~l~~~~~~~~----~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPts 199 (605)
|++........ ...++.++.+.+++ ..+||||+|+..|+++...+|++ |||+..
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~LL--------------~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQLL--------------VEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHHHH--------------HHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHHHH--------------HHhcccccCccEEEEEecCChhh--cCcccc
Confidence 55532111111 11223333344433 34678888888888888999987 888865
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.12 E-value=4.9e-07 Score=85.54 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=30.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEEC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTILLN 100 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I~~~ 100 (605)
.+|++++|+||||||||||++.|++..++ ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 36899999999999999999999998874 55666543
No 186
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.09 E-value=4.4e-06 Score=85.83 Aligned_cols=147 Identities=15% Similarity=0.166 Sum_probs=81.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE-CCeeCCcccccCceEEEcCCCCCCC-CCCHHHHHHHHHhcCCCCh
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTSPTNGTILL-NSSPIKPSSFRKLSAYVPQHDACIP-SLTVYETFLFSARLLVPKT 143 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~-~g~~~~~~~~~~~i~yv~Q~~~l~~-~lTv~e~l~~~~~~~~~~~ 143 (605)
+..++|+|++|+|||||+|.|.|... .+ .+.+- ....+..|++.+++..+. --|. ...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~--tTr~~~~gi~~~~~~~i~~iDTp------------G~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQ--TTRHRIVGIHTEGAYQAIYVDTP------------GLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSS--CCSSCEEEEEEETTEEEEEESSS------------SCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCC--cceeeEEEEEEECCeeEEEEECc------------CCC
Confidence 34899999999999999999999742 11 11111 112344577776542110 0011 000
Q ss_pred hHHHHHHHHH--------HHHcCCccc-ccccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHH
Q 007383 144 SQIDTIITVL--------LTELRLAHL-ASTRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEPTSGLDSRS-AFNVMQ 211 (605)
Q Consensus 144 ~~~~~~v~~~--------l~~l~L~~~-~~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEPtsgLD~~~-~~~i~~ 211 (605)
.+......+. ++..++.-. .| ...+|+|++ .+++.+. ..|.++++ +.+|... ...+.+
T Consensus 68 ~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd---~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~ 137 (301)
T 1ega_A 68 MEEKRAINRLMNKAASSSIGDVELVIFVVE---GTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLP 137 (301)
T ss_dssp HHHHHHHHHHHTCCTTSCCCCEEEEEEEEE---TTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhcCCEEEEEEe---CCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHH
Confidence 0000111111 111111101 11 123898886 4566666 68999998 7899876 667888
Q ss_pred HHHHHHhcCCc--EEEEEeCCCChHHHhcCCeEE
Q 007383 212 TLKSISASRHR--TVILSIHQPSFKILSTIDRIL 243 (605)
Q Consensus 212 ~L~~l~~~~g~--tii~~~H~~~~~i~~~~d~v~ 243 (605)
.++++++..+. .+.++.|+-. .+.+++|.+.
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 88888765443 5666677655 3666666543
No 187
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.07 E-value=1e-05 Score=84.72 Aligned_cols=145 Identities=11% Similarity=0.078 Sum_probs=82.0
Q ss_pred eeeee-EEEeCCeEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 56 LKNVS-LTAYPSQILAIVGPSGAGKSTLLDILSAR--TSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 56 L~~vs-~~i~~Ge~~ailG~nGaGKTTLL~~l~g~--~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .++..| | ....+.|+.-+..+ ...+-.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g-------~~~~vlyi~~E~~~----~~~~l~ 174 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y-------PGGKIIFIDTENTF----RPDRLR 174 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B-------CCCEEEEEESSSCC----CHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHHH
Confidence 44433 56899999999999999999999988874 222111 0 01224455443321 222222
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH---
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE-RRRVSIGLSLL----HDPAVLLLDEPTSGLDSR--- 204 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe-rqRv~ia~aL~----~~P~illLDEPtsgLD~~--- 204 (605)
....++ +... +++++.+.+ ....++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 175 ~~~~~~-g~~~-------~~~l~~l~~--------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~ 238 (343)
T 1v5w_A 175 DIADRF-NVDH-------DAVLDNVLY--------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG 238 (343)
T ss_dssp HHHHHT-TCCH-------HHHHHTEEE--------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG
T ss_pred HHHHHc-CCCH-------HHHHhceeE--------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc
Confidence 222111 1111 112222211 12223333 24555566666 568999999999865432
Q ss_pred ---------HHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 205 ---------SAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 205 ---------~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
...+++..|++++++.+.+||++.|-.+
T Consensus 239 ~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 239 RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 1356677788888888899999888643
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.07 E-value=1.1e-06 Score=86.51 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=35.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
..++|++++|.|+||||||||+++|+|+ .|+|.+++++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3478999999999999999999999998 78899988764
No 189
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=1.9e-06 Score=82.66 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 51 PPTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+...+++|+|+++++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999999765
No 190
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.03 E-value=2.2e-05 Score=82.33 Aligned_cols=124 Identities=14% Similarity=0.075 Sum_probs=72.7
Q ss_pred CCe--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC
Q 007383 65 PSQ--ILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPK 142 (605)
Q Consensus 65 ~Ge--~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 142 (605)
++. .+.|.||+|+|||||++.+++...+..+ ..+.++...+ ..+..+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~---------------~~~~~i~~~~----~~~~~~~----------- 90 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT---------------ARFVYINGFI----YRNFTAI----------- 90 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC---------------CEEEEEETTT----CCSHHHH-----------
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC---------------eeEEEEeCcc----CCCHHHH-----------
Confidence 456 8999999999999999999987665320 1122332111 1122221
Q ss_pred hhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--
Q 007383 143 TSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSL--LHDPAVLLLDEPTSGLDSRSAFNVMQTLKSISA-- 218 (605)
Q Consensus 143 ~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-- 218 (605)
+..+++.++... . ..+.+.++..... ...+ ..+|.++++||+... |......+.+.+.++..
T Consensus 91 -------~~~l~~~l~~~~----~-~~~~~~~~~~~~l-~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~ 156 (389)
T 1fnn_A 91 -------IGEIARSLNIPF----P-RRGLSRDEFLALL-VEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLG 156 (389)
T ss_dssp -------HHHHHHHTTCCC----C-SSCCCHHHHHHHH-HHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHS
T ss_pred -------HHHHHHHhCccC----C-CCCCCHHHHHHHH-HHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCC
Confidence 122333333210 1 1233433332211 1111 245889999999876 88888888888876653
Q ss_pred cCCcEEEEEeCCCC
Q 007383 219 SRHRTVILSIHQPS 232 (605)
Q Consensus 219 ~~g~tii~~~H~~~ 232 (605)
..+.++|+++|++.
T Consensus 157 ~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 157 AFRIALVIVGHNDA 170 (389)
T ss_dssp SCCEEEEEEESSTH
T ss_pred cCCEEEEEEECCch
Confidence 13679999999974
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.00 E-value=1.6e-06 Score=98.81 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=75.6
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCeeCCc---ccccCceEEEcCCCCCCCCCCHHHHHHH
Q 007383 60 SLTAYPSQILAIVGPSGAGKSTLLDILSARTSP--TNGTILLNSSPIKP---SSFRKLSAYVPQHDACIPSLTVYETFLF 134 (605)
Q Consensus 60 s~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~--~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 134 (605)
|+.+++|+.++|+|++|+|||||++.|++...+ ..|+| .+|..... .+.++.+++.+|...+... ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 345678999999999999999999999977654 67877 56655421 2234456665554433221 1100
Q ss_pred HHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 007383 135 SARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQTLK 214 (605)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~ 214 (605)
...|+. +.-. -........-..+..++++| |+.|+|+.+.. ++ +
T Consensus 77 --------------------------nliDTp--G~~~---f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~---~ 120 (665)
T 2dy1_A 77 --------------------------FLLDAP--GYGD---FVGEIRGALEAADAALVAVS-AEAGVQVGTER-AW---T 120 (665)
T ss_dssp --------------------------EEEECC--CSGG---GHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HH---H
T ss_pred --------------------------EEEeCC--Cccc---hHHHHHHHHhhcCcEEEEEc-CCcccchhHHH-HH---H
Confidence 111111 0000 00111122224677888999 99999987662 33 3
Q ss_pred HHHhcCCcEEEEEeCCCCh
Q 007383 215 SISASRHRTVILSIHQPSF 233 (605)
Q Consensus 215 ~l~~~~g~tii~~~H~~~~ 233 (605)
.+.+ .+.++|++.|..+.
T Consensus 121 ~~~~-~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 121 VAER-LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHH-TTCCEEEEEECGGG
T ss_pred HHHH-ccCCEEEEecCCch
Confidence 3322 36788888888763
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.99 E-value=2.4e-05 Score=81.10 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=81.7
Q ss_pred eeeee-EEEeCCeEEEEECCCCCcHHHHHHHHhCCC-CCC-ccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 56 LKNVS-LTAYPSQILAIVGPSGAGKSTLLDILSART-SPT-NGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 56 L~~vs-~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~-~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+. .| | ....+.|+.-+..+ ...+-.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g-------~~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G-------LSGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C-------CSCEEEEEESSSCC----CHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHHH
Confidence 44442 568999999999999999999999887642 221 11 0 01234455433321 122211
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH-----
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGG-ERRRVSIGLSLL---HDPAVLLLDEPTSGLDS----- 203 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgG-erqRv~ia~aL~---~~P~illLDEPtsgLD~----- 203 (605)
....++ +... +++++.+ .+.+..+.. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 160 ~~~~~~-g~~~-------~~~~~~l--------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~ 223 (324)
T 2z43_A 160 NMAKAL-GLDI-------DNVMNNI--------YYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR 223 (324)
T ss_dssp HHHHHT-TCCH-------HHHHHTE--------EEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT
T ss_pred HHHHHh-CCCH-------HHHhccE--------EEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc
Confidence 111111 1111 1122211 111223333 235677777777 57999999999975432
Q ss_pred ---H----HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 007383 204 ---R----SAFNVMQTLKSISASRHRTVILSIHQP 231 (605)
Q Consensus 204 ---~----~~~~i~~~L~~l~~~~g~tii~~~H~~ 231 (605)
. ...+++..|++++++.+.+||++.|-.
T Consensus 224 g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 224 ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 1 235667777888877789999987754
No 193
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.99 E-value=2.1e-06 Score=92.99 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=49.4
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEE-EeCCeEEEecChh
Q 007383 187 HDPAVLLLDEPTSGLDS-RSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILL-LSKGSVVHHGTLA 257 (605)
Q Consensus 187 ~~P~illLDEPtsgLD~-~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~-l~~G~iv~~g~~~ 257 (605)
.+|++|++||+..-.+. .++..+...+.++.. .|+.||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 678889999988865 5789999999865333223344333 4457666666664
No 194
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.96 E-value=3.8e-06 Score=86.85 Aligned_cols=133 Identities=8% Similarity=0.136 Sum_probs=85.3
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
..-|+++.+-+++|+++.|.|++|+|||||+.-++..... +| ..+.|+.-+ ++..+..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g---------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------ND---------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-------TT---------CEEEEEESS------SCHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC---------CeEEEEECC------CCHHHHH
Confidence 3467888877999999999999999999998887743110 11 124444322 3433322
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSRSAFNVMQT 212 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~ 212 (605)
+++......+++.+..+.. ..||.+|++|+..|...+.++++++.|+|... ..++.+.
T Consensus 113 ---------------~R~~~~~~~i~~~~l~~~~--~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~ 170 (315)
T 3bh0_A 113 ---------------KRLIVTAGSINAQKIKAAR--RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSK 170 (315)
T ss_dssp ---------------HHHHHHHTTCCHHHHHSCH--HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHH
T ss_pred ---------------HHHHHHHcCCCHHHHhcCC--CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHH
Confidence 1221111122222222111 12899999999999999999999999998643 3456667
Q ss_pred HHHHHhcCCcE--EEEEeC
Q 007383 213 LKSISASRHRT--VILSIH 229 (605)
Q Consensus 213 L~~l~~~~g~t--ii~~~H 229 (605)
++++.++.|.. +|++-|
T Consensus 171 i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 171 TRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHhcCCCCeEEEEeC
Confidence 77776665666 777766
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.92 E-value=3e-06 Score=81.61 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=26.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998875
No 196
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.91 E-value=1.6e-06 Score=83.53 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=36.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
.++|++++|+|+||||||||++.|++.+++..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 56899999999999999999999999988888888876654
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.85 E-value=6.5e-06 Score=79.67 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC-CccEE
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSP-TNGTI 97 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~-~~G~I 97 (605)
++|++++|+||||||||||++.|++.+++ ..+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~ 40 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence 58999999999999999999999999876 33433
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.85 E-value=7.7e-05 Score=75.69 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc---CCcEEEEEeCCC---ChHH
Q 007383 172 SGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS----------RSAFNVMQTLKSISAS---RHRTVILSIHQP---SFKI 235 (605)
Q Consensus 172 SgGerqRv~ia~aL~~~P~illLDEPtsgLD~----------~~~~~i~~~L~~l~~~---~g~tii~~~H~~---~~~i 235 (605)
+++++.|..++.+...+|.+|++||+.+-++. .....++..+...... .+..||.+++++ +..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 35667777777777889999999999876553 2233444444443211 245678888865 3344
Q ss_pred HhcCCeEEEEe
Q 007383 236 LSTIDRILLLS 246 (605)
Q Consensus 236 ~~~~d~v~~l~ 246 (605)
.+.|++.+.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 55677665543
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.84 E-value=3.7e-06 Score=78.59 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
.+|++++|+|+|||||||+.+.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999875 7788877554
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.79 E-value=1e-05 Score=77.77 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=27.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
++++|++++|+|+||||||||.+.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999864
No 201
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.78 E-value=1.1e-05 Score=87.32 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=97.1
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHH
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFL 133 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (605)
.-|+.+.+=+++|+++.|.|++|+|||||..-++.......| ..+.|+.=+ ++..+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g---------------~~vl~~slE------~~~~~l~~ 246 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG---------------VGVGIYSLE------MPAAQLTL 246 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---------------CCEEEEESS------SCHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------------CeEEEEECC------CCHHHHHH
Confidence 357777777999999999999999999998888764322112 112232211 22222111
Q ss_pred H--H--Hhc-C-----CCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 007383 134 F--S--ARL-L-----VPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEPTSGL 201 (605)
Q Consensus 134 ~--~--~~~-~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEPtsgL 201 (605)
= + ... . +.-..+..+++.+.++.+.-.+..-.. ..++|..+.+ +.++.+. .+|+++++|..+.-.
T Consensus 247 R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 247 RMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDD-TPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp HHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEEC-CTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCB
T ss_pred HHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcC
Confidence 0 0 000 0 000112223333444433221211111 2467777653 4555555 489999999987643
Q ss_pred CH----------HHHHHHHHHHHHHHhcCCcEEEEEeCCCCh------------------HHHhcCCeEEEEeC
Q 007383 202 DS----------RSAFNVMQTLKSISASRHRTVILSIHQPSF------------------KILSTIDRILLLSK 247 (605)
Q Consensus 202 D~----------~~~~~i~~~L~~l~~~~g~tii~~~H~~~~------------------~i~~~~d~v~~l~~ 247 (605)
+. .....+.+.|+.++++.+.+||+++|-.+. .+.+.+|.|+.|..
T Consensus 324 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 324 GPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 32 123577888999998889999999883210 24567888888863
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.78 E-value=4.4e-05 Score=82.15 Aligned_cols=125 Identities=13% Similarity=0.189 Sum_probs=71.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCCChh
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVPKTS 144 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 144 (605)
++.+++++||+|+||||++..|++.+.+..++|.+-+.+.. .....|.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~-------------------r~~a~eqL~~---------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY-------------------RPAAYDQLLQ---------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS-------------------CHHHHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc-------------------chhHHHHHHH----------
Confidence 58899999999999999999999988777777766444321 0012233322
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhcCC
Q 007383 145 QIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPT-SG--LDSRSAFNVMQTLKSISASRH 221 (605)
Q Consensus 145 ~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPt-sg--LD~~~~~~i~~~L~~l~~~~g 221 (605)
..+..|+..... ..+...-+-.+-+++.+...+++++|+|+|- .+ .|+....++.++++.+. ...
T Consensus 147 --------~~~~~gv~~~~~---~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~-pd~ 214 (433)
T 3kl4_A 147 --------LGNQIGVQVYGE---PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK-PDD 214 (433)
T ss_dssp --------HHHTTTCCEECC---TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC-CSE
T ss_pred --------HHHhcCCceeec---cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC-Ccc
Confidence 122223321110 0111111222233444445689999999887 34 78877777777666553 233
Q ss_pred cEEEEEeCC
Q 007383 222 RTVILSIHQ 230 (605)
Q Consensus 222 ~tii~~~H~ 230 (605)
..+++..|.
T Consensus 215 vlLVlDa~~ 223 (433)
T 3kl4_A 215 VILVIDASI 223 (433)
T ss_dssp EEEEEEGGG
T ss_pred eEEEEeCcc
Confidence 344444443
No 203
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.74 E-value=1.9e-06 Score=89.35 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=34.0
Q ss_pred ceeeeeeeEEEeCCe------EEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 53 TYILKNVSLTAYPSQ------ILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge------~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
++.|++++..+.+++ ++||+||||||||||+++|++++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456777777777776 9999999999999999999999763
No 204
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.68 E-value=5.1e-06 Score=86.91 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
.++..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987644
No 205
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.65 E-value=1.9e-06 Score=84.00 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=42.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC---CCCccEEEE--------CCeeCCc----ccccCceEEEcCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSART---SPTNGTILL--------NSSPIKP----SSFRKLSAYVPQHD 120 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~---~~~~G~I~~--------~g~~~~~----~~~~~~i~yv~Q~~ 120 (605)
+.+++|+|||||||||+.++|++.+ .++.|++.. +|.+++. ..+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999865 557888877 6766542 23456678888754
No 206
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.65 E-value=1.2e-05 Score=75.34 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.65 E-value=4.7e-05 Score=77.97 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=26.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+.++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788899999999999999999999865
No 208
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.57 E-value=3.7e-05 Score=89.38 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=27.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.+++|+.++|.||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999864
No 209
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.57 E-value=3.8e-05 Score=70.44 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=25.0
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILS 87 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~ 87 (605)
++.++.+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566666 99999999999999999986
No 210
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.56 E-value=2.2e-05 Score=72.84 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
.|++++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999998653
No 211
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.53 E-value=5.3e-06 Score=86.76 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=45.4
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
+.+++++++..++|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 4688899999999999999999999999999999999887778877765543
No 212
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.53 E-value=7e-05 Score=80.92 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=40.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC------------CCccEEEECCeeC---CcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS------------PTNGTILLNSSPI---KPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~------------~~~G~I~~~g~~~---~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
.++|+|+||+|||||+|.|+|... +.+|.+.++|+++ +....++..++.+|....+..+++.+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999864 5679999999864 2222334444444544445444555555
Q ss_pred HH
Q 007383 133 LF 134 (605)
Q Consensus 133 ~~ 134 (605)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.48 E-value=2.1e-07 Score=97.04 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=39.5
Q ss_pred CCceeeeeeeEEEeCCeE--EEEECCCCCcHHHHHHHHhCCCCCCccE
Q 007383 51 PPTYILKNVSLTAYPSQI--LAIVGPSGAGKSTLLDILSARTSPTNGT 96 (605)
Q Consensus 51 ~~~~iL~~vs~~i~~Ge~--~ailG~nGaGKTTLL~~l~g~~~~~~G~ 96 (605)
+...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 346688999999999999 9999999999999999999987655443
No 214
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.46 E-value=0.00083 Score=65.85 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSPTNG 95 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~~~G 95 (605)
-++|+|++|+|||||+|.|+|.....+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4799999999999999999998776554
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.46 E-value=0.00031 Score=69.71 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=24.9
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.++++++..++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555665 88999999999999999998653
No 216
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.45 E-value=3.3e-05 Score=76.02 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=32.4
Q ss_pred eeeeeeEEEe---CCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Q 007383 55 ILKNVSLTAY---PSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLN 100 (605)
Q Consensus 55 iL~~vs~~i~---~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~ 100 (605)
=|.++|+++. +|.+++|.|++||||||+++.|+..+.+ .+++...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4677777776 8999999999999999999999999887 6666543
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.45 E-value=0.0017 Score=68.03 Aligned_cols=35 Identities=29% Similarity=0.236 Sum_probs=28.3
Q ss_pred eeeeee--EEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 55 ILKNVS--LTAYPSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 55 iL~~vs--~~i~~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-|+.+- +=+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 35889999999999999999998877753
No 218
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.43 E-value=2.7e-05 Score=81.72 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=36.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
+++..++|+|++|||||||+|.|+|...+.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 46889999999999999999999999888888888876654
No 219
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.43 E-value=3.5e-06 Score=88.93 Aligned_cols=46 Identities=28% Similarity=0.284 Sum_probs=30.2
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
.+.+++++++.| +|+|++|+|||||++.|.|......|.+..++.+
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~ 74 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEK 74 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcc
Confidence 456888998877 9999999999999999998876666665555443
No 220
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.41 E-value=0.00071 Score=69.66 Aligned_cols=170 Identities=11% Similarity=0.080 Sum_probs=87.4
Q ss_pred eeeeee-EEEeCCeEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCeeCCcccc-cCceEEEcCCCCCCCCCCHHH
Q 007383 55 ILKNVS-LTAYPSQILAIVGPSGAGKSTLLDILSAR--TSPTNGTILLNSSPIKPSSF-RKLSAYVPQHDACIPSLTVYE 130 (605)
Q Consensus 55 iL~~vs-~~i~~Ge~~ailG~nGaGKTTLL~~l~g~--~~~~~G~I~~~g~~~~~~~~-~~~i~yv~Q~~~l~~~lTv~e 130 (605)
.|+.+- +-+++|+++.|.||+|+|||||...++.. +++ |... +......... ...+.|+.-+..+ ...+
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~--~~~~-~~~~~~~gg~~~~~v~yi~~e~~~----~~~~ 158 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPE--FLFY-DEEAVSKGEVAQPKAVYIDTEGTF----RPER 158 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGG--GEEC-CTTTSCTTTTSSEEEEEEESSSCC----CHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccc--cccc-cccccccCCCCCceEEEEECCCCC----CHHH
Confidence 344443 56899999999999999999999888742 221 1100 0000000000 0245566544322 1222
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHH-HHHHHHHHHHh---hCCCEEEEeCCCCCCC----
Q 007383 131 TFLFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGE-RRRVSIGLSLL---HDPAVLLLDEPTSGLD---- 202 (605)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGe-rqRv~ia~aL~---~~P~illLDEPtsgLD---- 202 (605)
-.....++ +.+. +++++.+- +.+..+..+ .+-+..++.++ .+++++++|.-++-..
T Consensus 159 l~~~~~~~-g~~~-------~~~~~~l~--------~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~ 222 (322)
T 2i1q_A 159 IMQMAEHA-GIDG-------QTVLDNTF--------VARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYT 222 (322)
T ss_dssp HHHHHHHH-TCCH-------HHHHHTEE--------EEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCC
T ss_pred HHHHHHHc-CCCH-------HHHhcCEE--------EEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhc
Confidence 11111111 1110 11222110 112223332 23344455555 3589999999876321
Q ss_pred ----HH----HHHHHHHHHHHHHhcCCcEEEEEeCCCCh---------------HHHhcCCeEEEEeC
Q 007383 203 ----SR----SAFNVMQTLKSISASRHRTVILSIHQPSF---------------KILSTIDRILLLSK 247 (605)
Q Consensus 203 ----~~----~~~~i~~~L~~l~~~~g~tii~~~H~~~~---------------~i~~~~d~v~~l~~ 247 (605)
.. ...+++..|++++++.+.+||++.|-... .+...+|.++.|++
T Consensus 223 ~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 223 GRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 11 23566777888888889999988773221 13446777777764
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.39 E-value=3.3e-05 Score=72.42 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=31.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc--EEEECCee
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNG--TILLNSSP 103 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G--~I~~~g~~ 103 (605)
++|++++|+|++||||||+.+.|++.+++ .| .+.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 47999999999999999999999998755 45 55565543
No 222
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.34 E-value=2.2e-05 Score=87.21 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=41.6
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCe
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSS 102 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~ 102 (605)
.+++++++.+ +|+.++|+||||+|||||+++|++...+..|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 3667777777 89999999999999999999999999888888877764
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.23 E-value=0.00024 Score=65.94 Aligned_cols=28 Identities=36% Similarity=0.517 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
++|..++|+|++|+|||||++.|+|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4678899999999999999999999753
No 224
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.22 E-value=0.00016 Score=69.61 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=24.3
Q ss_pred eeeEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007383 58 NVSLTAYPSQILAIVGPSGAGKSTLLDILS 87 (605)
Q Consensus 58 ~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~ 87 (605)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445666665 99999999999999999884
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.22 E-value=0.00032 Score=66.75 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999987543
No 226
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.21 E-value=3.7e-05 Score=80.95 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=31.5
Q ss_pred eeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 58 NVSLTAYPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 58 ~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998765
No 227
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.20 E-value=6.4e-05 Score=72.60 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=35.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCcc--EEEECCee
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNG--TILLNSSP 103 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G--~I~~~g~~ 103 (605)
.+++|.+++|.|++||||||+.+.|++.+.|..| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3568999999999999999999999999877777 77777543
No 228
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.16 E-value=0.00078 Score=72.85 Aligned_cols=178 Identities=11% Similarity=0.073 Sum_probs=89.5
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCccccc-CceEEEcCCCCCCCCCCHHHHH
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFR-KLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~-~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
.-|+.+.+=+++|+++.|.|++|+|||||.--++.........+.+-.-+.+..++. +..+... .... +.+
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~-------~i~~-~~l 256 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAG-------SINA-QKI 256 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHS-------CCCH-HHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHc-------CCCH-HHH
Confidence 356666666899999999999999999998776643211111222211111111111 1000000 0011 111
Q ss_pred HHHHh-cCCCChhHHHHHHHHHHHHcCCcccc-cccccCCCCHHHHHHHHHHHHHh--hCCC--EEEEeCCCC---CC--
Q 007383 133 LFSAR-LLVPKTSQIDTIITVLLTELRLAHLA-STRLAHNLSGGERRRVSIGLSLL--HDPA--VLLLDEPTS---GL-- 201 (605)
Q Consensus 133 ~~~~~-~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~~~~~LSgGerqRv~ia~aL~--~~P~--illLDEPts---gL-- 201 (605)
.-+.. + +..+ ..++.+....+.-.+.. +. ..++|-.+-+. .++.+. .+|+ ++++|--.. +-
T Consensus 257 ~~g~~~l---~~~~-~~~l~~a~~~l~~~~l~i~d--~~~~s~~~i~~--~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~ 328 (444)
T 3bgw_A 257 KAARRDF---ASED-WGKLSMAIGEISNSNINIFD--KAGQSVNYIWS--KTRQTKRKNPGKRVIVMIDYLQLLEPAKAN 328 (444)
T ss_dssp HHTGGGT---CCSC-HHHHHHHHHHHHTSCEEEEC--CSSCBHHHHHH--HHHHHHHHSCSSCEEEEEECSTTSBCSCSS
T ss_pred hcccCCC---CHHH-HHHHHHHHHHHhcCCEEEEC--CCCCCHHHHHH--HHHHHHHHhCCCCeEEEEecHHhccCCCCC
Confidence 10000 1 0111 12233333332111111 11 13466665432 334443 4799 999996542 11
Q ss_pred -C-HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCh------------------HHHhcCCeEEEEeC
Q 007383 202 -D-SRSAFNVMQTLKSISASRHRTVILSIHQPSF------------------KILSTIDRILLLSK 247 (605)
Q Consensus 202 -D-~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~------------------~i~~~~d~v~~l~~ 247 (605)
+ ......+...|+.++++.|.+||+++|-.+. .+.+.+|-|+.|..
T Consensus 329 ~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r 394 (444)
T 3bgw_A 329 DSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR 394 (444)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEec
Confidence 1 2234567788899999889999999984321 25667788777753
No 229
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.14 E-value=0.00023 Score=67.14 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=20.9
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
..+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999998888 5689999999999999999974
No 230
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.14 E-value=7.1e-05 Score=73.57 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=75.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhc-CCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARL-LVP 141 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~ 141 (605)
+.+|+.++|.||+||||||++.++........| ..+.++.+.+.+......++.+++...... .+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-------------CCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 457999999999999999988876432111011 012344555555433333444444321110 000
Q ss_pred ChhHHHHHHHHHHHHcCCcccc---cccccCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q 007383 142 KTSQIDTIITVLLTELRLAHLA---STRLAHNLSGGERRRVSIGLSLLHDPAVLLLDEPTS-GLDSRSAFNVMQTLKSIS 217 (605)
Q Consensus 142 ~~~~~~~~v~~~l~~l~L~~~~---~~~~~~~LSgGerqRv~ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~ 217 (605)
... ......... +..+ --.+.|...+.. ...+.+-+++++||.-. ++|.......++.+.+..
T Consensus 140 ~~g----------~~~~~~~~~~~~~~~I-vv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 140 SCG----------YSVRFESILPRPHASI-MFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp SEE----------EEETTEEECCCSSSEE-EEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred eEE----------EeechhhccCCCCCeE-EEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 000 000000000 0111 113456655553 33578999999999976 688776655555554443
Q ss_pred hcCCcEEEEEeCCCChHHHhcCC
Q 007383 218 ASRHRTVILSIHQPSFKILSTID 240 (605)
Q Consensus 218 ~~~g~tii~~~H~~~~~i~~~~d 240 (605)
.+ -.+++++.--+.....++++
T Consensus 207 ~~-~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 207 PE-VRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp TT-SEEEEEECSSCCHHHHHHTT
T ss_pred CC-CeEEEEecCCCHHHHHHHcC
Confidence 22 34666664333333445554
No 231
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.14 E-value=0.001 Score=66.71 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++.-+.|.||+|+|||||.+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 566679999999999999999998764
No 232
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.12 E-value=0.00025 Score=68.68 Aligned_cols=46 Identities=7% Similarity=0.139 Sum_probs=30.5
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 187 HDPAVLLLDEPTSGL-DSRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 187 ~~P~illLDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
.+|+++++||.-.-- +......+.+.+.+........+|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 578999999965432 2333777888888876553333777777543
No 233
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.11 E-value=0.00051 Score=69.79 Aligned_cols=30 Identities=30% Similarity=0.477 Sum_probs=25.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCccE
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTSPTNGT 96 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~~~~G~ 96 (605)
..+.|.||+|+|||||.++|++......|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 689999999999999999999987655543
No 234
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.11 E-value=0.00052 Score=67.26 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC---------CCChHHHhcCCeEEEEe
Q 007383 188 DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH---------QPSFKILSTIDRILLLS 246 (605)
Q Consensus 188 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H---------~~~~~i~~~~d~v~~l~ 246 (605)
+|+++++||--. |+. ++++.++.+++. |.+||++-| ....++..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 356667777764 899999999 55567888999999875
No 235
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.09 E-value=0.00042 Score=71.28 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=33.1
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 007383 186 LHDPAVLLLDEPTS-GLDSRSAFNVMQTLKSISASRHRTVILSIHQP 231 (605)
Q Consensus 186 ~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 231 (605)
..+|++|++||+-. .-|...+..+...+..+... +..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 35799999999865 23447788899998887654 56677777654
No 236
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.09 E-value=0.0001 Score=70.26 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=31.7
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468899999888885 689999999999999999874
No 237
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.03 E-value=0.00013 Score=78.34 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=41.4
Q ss_pred eeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 57 KNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 57 ~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
+++++. +|++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 567777 8999999999999999999999999998889999877665
No 238
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.96 E-value=0.0002 Score=67.38 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I 97 (605)
.+|.+++|+|++||||||+.+.|++.+.+..|.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999999999999999887666655
No 239
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.93 E-value=0.00036 Score=66.85 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=26.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999998764
No 240
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.91 E-value=0.00088 Score=61.41 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999754
No 241
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.00056 Score=71.28 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998765
No 242
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.84 E-value=0.00047 Score=64.98 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=26.1
Q ss_pred eeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 58 NVSLTAYPSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 58 ~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777788999999999999999999999875
No 243
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.81 E-value=0.00043 Score=73.47 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=34.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCe
Q 007383 61 LTAYPSQILAIVGPSGAGKSTLLDILSAR-----------TSPTNGTILLNSS 102 (605)
Q Consensus 61 ~~i~~Ge~~ailG~nGaGKTTLL~~l~g~-----------~~~~~G~I~~~g~ 102 (605)
..+..|..++|+|+||+|||||+|.|+|. ..|..|.+.++|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34567888999999999999999999998 5567888888764
No 244
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.81 E-value=0.0023 Score=79.07 Aligned_cols=142 Identities=15% Similarity=0.100 Sum_probs=79.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHHHHHhcCCC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFLFSARLLVP 141 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~ 141 (605)
=+++|+++.|.||+|+|||||+..++.......|. +.|+.-+...- + +. +.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~----------------VlyiS~Ees~~------q-l~-A~----- 778 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT----------------CAFIDAEHALD------P-IY-AR----- 778 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC----------------EEEECTTSCCC------H-HH-HH-----
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC----------------eEEEeccchHH------H-HH-HH-----
Confidence 49999999999999999999999987654322222 33332222110 0 00 11
Q ss_pred ChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHH
Q 007383 142 KTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEPTSGLD-S------------RSA 206 (605)
Q Consensus 142 ~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEPtsgLD-~------------~~~ 206 (605)
.+|++.. +-.+...-+. .+-...++.++ .+|+++++|+...=.. . ...
T Consensus 779 --------------~lGvd~~-~L~i~~~~~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~ 841 (1706)
T 3cmw_A 779 --------------KLGVDID-NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAA 841 (1706)
T ss_dssp --------------HTTCCGG-GCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHH
T ss_pred --------------HcCCChh-heEEecCCcH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHH
Confidence 1111100 0000011122 23344444443 5899999999987552 1 123
Q ss_pred HHHHHHHHH---HHhcCCcEEEEEeCCCC---------------hHHHhcCCeEEEEeCCe
Q 007383 207 FNVMQTLKS---ISASRHRTVILSIHQPS---------------FKILSTIDRILLLSKGS 249 (605)
Q Consensus 207 ~~i~~~L~~---l~~~~g~tii~~~H~~~---------------~~i~~~~d~v~~l~~G~ 249 (605)
+++.+.+++ ++++.|.+||++.|-.+ -.+.+.+|-++.+++++
T Consensus 842 reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 842 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEecc
Confidence 345555555 56777899999988321 13566778888886544
No 245
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.80 E-value=0.0071 Score=66.22 Aligned_cols=169 Identities=16% Similarity=0.102 Sum_probs=87.9
Q ss_pred eeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHHH
Q 007383 54 YILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETFL 133 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (605)
.-|+.+.+=+.+|+++.|.|++|+|||||+.-++-......| ..+.|+.= .++..+.+.
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g---------------~~vl~~s~------E~s~~~l~~ 288 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG---------------KKVGLAML------EESVEETAE 288 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC---------------CCEEEEES------SSCHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC---------------CcEEEEec------cCCHHHHHH
Confidence 345666556899999999999999999998766543221111 11333321 223333222
Q ss_pred -HHHh-c-CCCCh--hH-----HHHHHHHHHHHc-CCcccc-cccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 007383 134 -FSAR-L-LVPKT--SQ-----IDTIITVLLTEL-RLAHLA-STRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEPTS 199 (605)
Q Consensus 134 -~~~~-~-~~~~~--~~-----~~~~v~~~l~~l-~L~~~~-~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEPts 199 (605)
+.+. . .+..+ .. ..+..+++.+.+ .-.+.. +.. +.+++-.+ -+..++.++ .+|+++++|=-+.
T Consensus 289 r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~-~~~~~~~~--i~~~i~~~~~~~~~~lvVID~l~~ 365 (503)
T 1q57_A 289 DLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDS-FAEAETDR--LLAKLAYMRSGLGCDVIILDHISI 365 (503)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECC-C---CHHH--HHHHHHHHHHTTCCSEEEEECTTC
T ss_pred HHHHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECC-CCCCCHHH--HHHHHHHHHHhcCCCEEEEccchh
Confidence 1011 1 11000 00 000111222222 101110 111 12244333 334445554 4799999995443
Q ss_pred CC-------CH-HHHHHHHHHHHHHHhcCCcEEEEEeCCCC---------------------hHHHhcCCeEEEEeC
Q 007383 200 GL-------DS-RSAFNVMQTLKSISASRHRTVILSIHQPS---------------------FKILSTIDRILLLSK 247 (605)
Q Consensus 200 gL-------D~-~~~~~i~~~L~~l~~~~g~tii~~~H~~~---------------------~~i~~~~d~v~~l~~ 247 (605)
+ +. ....++...|++++++.+.+||+++|-.. ..+.+.+|-|+.|..
T Consensus 366 -l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 366 -VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp -CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEE
T ss_pred -cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEe
Confidence 2 21 23456788889999888999999988542 124567899998863
No 246
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.80 E-value=0.00011 Score=75.27 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=40.1
Q ss_pred ee-eeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeC
Q 007383 57 KN-VSLTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPI 104 (605)
Q Consensus 57 ~~-vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~ 104 (605)
++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45 777766 999999999999999999999999888788888876554
No 247
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.80 E-value=0.00064 Score=71.65 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=27.6
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILS 87 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~ 87 (605)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 47778888886 99999999999999999986
No 248
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.78 E-value=0.0047 Score=60.19 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=43.2
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChH---------HHhcCCeEEEEe
Q 007383 186 LHDPAVLLLDEPTS----GLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFK---------ILSTIDRILLLS 246 (605)
Q Consensus 186 ~~~P~illLDEPts----gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~---------i~~~~d~v~~l~ 246 (605)
-.+|+++++|--+. .-|.....++...|++++++.+.++++++|..... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35889999986432 12455667788889999988899999999864321 234688888875
No 249
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.74 E-value=0.0034 Score=60.04 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=31.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 187 HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 187 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 3678999999765 7888887777777653 23567888888754
No 250
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.72 E-value=0.0067 Score=63.39 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999998754
No 251
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.69 E-value=0.00058 Score=65.04 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007383 68 ILAIVGPSGAGKSTLLDILSA 88 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g 88 (605)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 252
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.66 E-value=0.016 Score=60.82 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=27.1
Q ss_pred eeeeee--EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007383 55 ILKNVS--LTAYPSQILAIVGPSGAGKSTLLDILSA 88 (605)
Q Consensus 55 iL~~vs--~~i~~Ge~~ailG~nGaGKTTLL~~l~g 88 (605)
-|+.+- +=+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344433 3689999999999999999999877663
No 253
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.63 E-value=0.00057 Score=64.28 Aligned_cols=37 Identities=32% Similarity=0.360 Sum_probs=28.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCee
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTSP---TNGTILLNSSP 103 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~~---~~G~I~~~g~~ 103 (605)
.+++|+|+||||||||++.|.+.+++ .-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 57999999999999999999987543 34667765543
No 254
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=1.4e-05 Score=82.92 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=32.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 188 DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 188 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
+++++++|| ...|++..+..+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~--~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG--VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT--TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC--CceEEEEeCchh
Confidence 667999999 788999999999998887642 345667776654
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.60 E-value=0.001 Score=62.23 Aligned_cols=25 Identities=44% Similarity=0.626 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
-++|+|++|+|||||++.++|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4789999999999999999997543
No 256
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.55 E-value=0.0076 Score=59.29 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
++..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 444568899999999999999998753
No 257
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.50 E-value=0.0029 Score=65.16 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=27.7
Q ss_pred eeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007383 56 LKNVSLTAYPSQILAIVGPSGAGKSTLLDILSA 88 (605)
Q Consensus 56 L~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g 88 (605)
|+.+-+-+.+|..+.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444336688999999999999999999999875
No 258
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.49 E-value=0.0013 Score=61.38 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 259
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.48 E-value=0.00024 Score=74.19 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=33.9
Q ss_pred eeeeeeeEEEeCCeE--EEEECCCCCcHHHHHHHHhCCCC
Q 007383 54 YILKNVSLTAYPSQI--LAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 54 ~iL~~vs~~i~~Ge~--~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.+++++++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 477888888899988 99999999999999999998764
No 260
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.47 E-value=0.00053 Score=68.18 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=32.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCee
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSP 103 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~ 103 (605)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 456788999999999999999999998764 2456666543
No 261
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.43 E-value=0.0011 Score=63.24 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 262
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.42 E-value=0.0087 Score=61.48 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHH--h--hCCCEEEEeCCCCCC-----CH----------HHHHHHHHHHHH---HHhcCCcEEEEEeCCC
Q 007383 174 GERRRVSIGLSL--L--HDPAVLLLDEPTSGL-----DS----------RSAFNVMQTLKS---ISASRHRTVILSIHQP 231 (605)
Q Consensus 174 GerqRv~ia~aL--~--~~P~illLDEPtsgL-----D~----------~~~~~i~~~L~~---l~~~~g~tii~~~H~~ 231 (605)
+|+..+.++..+ + .+|++++.|--++=. +. ..++.+-+.|++ ++++.+.++|++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 455556666666 3 379999999877643 11 123344444444 5677899999998874
No 263
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.33 E-value=0.0076 Score=54.26 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 007383 188 DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQP 231 (605)
Q Consensus 188 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 231 (605)
+..+|++||. ..|++..+..+.+.|.... .+..+|++++.+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~--~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEH--RPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSS--CSSCEEEEESSC
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcC--CCEEEEEECCcC
Confidence 4568999998 4789988998888884432 234667777654
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0018 Score=59.33 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998664
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.30 E-value=0.0022 Score=59.47 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.25 E-value=0.00084 Score=66.17 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998543
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.21 E-value=0.002 Score=63.15 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=24.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999999743
No 268
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.21 E-value=0.046 Score=56.16 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999765
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.16 E-value=0.0027 Score=59.27 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 270
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.03 E-value=0.052 Score=67.14 Aligned_cols=149 Identities=16% Similarity=0.111 Sum_probs=83.3
Q ss_pred eeeeee--EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 55 ILKNVS--LTAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 55 iL~~vs--~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
-|+.+- +=+++|+++.|.||+|+|||||.-.++....... ..+.|+.-+...-+ +
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G----------------~~vlyis~E~s~~~---~---- 426 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----------------KTCAFIDAEHALDP---I---- 426 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------------CCEEEECTTSCCCH---H----
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC----------------CCeEEEEccCchHH---H----
Confidence 456654 3589999999999999999999877764321111 22455544332211 0
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH-------
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEPTSGLDS------- 203 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEPtsgLD~------- 203 (605)
. + +.+|++... -.+...-+..|- +.+++.++ .+|+++++|..++=...
T Consensus 427 ~-a-------------------~~lGvd~~~-L~i~~~~~~e~~--l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~ 483 (1706)
T 3cmw_A 427 Y-A-------------------RKLGVDIDN-LLCSQPDTGEQA--LEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 483 (1706)
T ss_dssp H-H-------------------HHTTCCGGG-CEEECCSSHHHH--HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCT
T ss_pred H-H-------------------HHcCCCHHH-eEEcCCCCHHHH--HHHHHHHHHhcCCCEEEECCHHHhhccccccccc
Confidence 0 1 112221100 000011133332 34455554 57999999999876541
Q ss_pred ------HHHHHHHHHHHHH---HhcCCcEEEEEeCCCC---------------hHHHhcCCeEEEEeCCe
Q 007383 204 ------RSAFNVMQTLKSI---SASRHRTVILSIHQPS---------------FKILSTIDRILLLSKGS 249 (605)
Q Consensus 204 ------~~~~~i~~~L~~l---~~~~g~tii~~~H~~~---------------~~i~~~~d~v~~l~~G~ 249 (605)
...+.+.+.++++ +++.+.+||++.|-.+ ..+...+|-++.+.+.+
T Consensus 484 g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 484 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 1223344444444 5677899999988421 13567788888876543
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.03 E-value=0.0028 Score=59.35 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357799999999999999999998543
No 272
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.03 E-value=0.0048 Score=57.64 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=24.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC-----CCCCcc----EEEECCe
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR-----TSPTNG----TILLNSS 102 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~-----~~~~~G----~I~~~g~ 102 (605)
-++|+|++|+|||||++.+.+. ..|+.| .+.++|+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 4889999999999999766543 334545 4555554
No 273
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.01 E-value=0.0031 Score=59.91 Aligned_cols=23 Identities=57% Similarity=0.723 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987554
No 274
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.01 E-value=0.024 Score=70.94 Aligned_cols=149 Identities=16% Similarity=0.123 Sum_probs=83.7
Q ss_pred eeeeeeE--EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCeeCCcccccCceEEEcCCCCCCCCCCHHHHH
Q 007383 55 ILKNVSL--TAYPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNSSPIKPSSFRKLSAYVPQHDACIPSLTVYETF 132 (605)
Q Consensus 55 iL~~vs~--~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (605)
-|+.+-. =+++|+++.|.||+|+|||||...++.......+ .+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~----------------~vlyis~E~s~~~---~~--- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----------------TCAFIDAEHALDP---IY--- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----------------CEEEECTTSCCCH---HH---
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC----------------eEEEEEcCCCHHH---HH---
Confidence 3555442 5899999999999999999998877653322111 2334333221110 00
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H------
Q 007383 133 LFSARLLVPKTSQIDTIITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLL--HDPAVLLLDEPTSGLD-S------ 203 (605)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~illLDEPtsgLD-~------ 203 (605)
+ +.+|++.. +-.+...-+.. +-+.+++.++ .+|+++++|.-++=.. +
T Consensus 428 --a-------------------~~lGvd~~-~L~I~~~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~ 483 (2050)
T 3cmu_A 428 --A-------------------RKLGVDID-NLLCSQPDTGE--QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 483 (2050)
T ss_dssp --H-------------------HHTTCCTT-TCEEECCSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCT
T ss_pred --H-------------------HHcCCCHH-HeEEeCCCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhccccccccc
Confidence 1 11121100 00011112332 2345566554 4799999999876552 1
Q ss_pred ------HHHHHHHHHHHHH---HhcCCcEEEEEeCCCCh---------------HHHhcCCeEEEEeCCe
Q 007383 204 ------RSAFNVMQTLKSI---SASRHRTVILSIHQPSF---------------KILSTIDRILLLSKGS 249 (605)
Q Consensus 204 ------~~~~~i~~~L~~l---~~~~g~tii~~~H~~~~---------------~i~~~~d~v~~l~~G~ 249 (605)
..++.+.+.|+++ +++.+.+||++.|-.+. .+...+|-++.|++.+
T Consensus 484 Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 484 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecc
Confidence 1233455556655 67789999999884221 2556788888887544
No 275
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.93 E-value=0.0034 Score=63.68 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=28.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTILLNS 101 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~~g 101 (605)
..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4578999999999999999999987553 35566664
No 276
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.90 E-value=0.0044 Score=59.62 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSA 88 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g 88 (605)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.89 E-value=0.004 Score=56.85 Aligned_cols=19 Identities=37% Similarity=0.719 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 007383 68 ILAIVGPSGAGKSTLLDIL 86 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l 86 (605)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 278
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.88 E-value=0.0041 Score=61.77 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
++++|+||||||||||-+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998764
No 279
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.86 E-value=0.0046 Score=58.50 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 280
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.85 E-value=0.0045 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998654
No 281
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.82 E-value=0.0045 Score=58.38 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999865
No 282
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.82 E-value=0.005 Score=58.40 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999987654
No 283
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.81 E-value=0.001 Score=63.57 Aligned_cols=25 Identities=44% Similarity=0.626 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 284
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.81 E-value=0.0041 Score=57.88 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
++..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999843
No 285
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.81 E-value=0.0059 Score=64.04 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=29.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECC
Q 007383 67 QILAIVGPSGAGKSTLLDILSAR-----------TSPTNGTILLNS 101 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~-----------~~~~~G~I~~~g 101 (605)
-.++|+|.+|+|||||+|.|+|. ..|..|.+.++|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46899999999999999999983 345678888776
No 286
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.80 E-value=0.0098 Score=64.98 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=23.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455669999999999999999998754
No 287
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.78 E-value=0.0044 Score=57.62 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.70 E-value=0.0058 Score=56.36 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhC
Q 007383 67 QILAIVGPSGAGKSTLLDILSA 88 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g 88 (605)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 289
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.67 E-value=0.0054 Score=58.36 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998643
No 290
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.64 E-value=0.018 Score=54.79 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC---------CCChHHHhcCCeEEEEe
Q 007383 188 DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH---------QPSFKILSTIDRILLLS 246 (605)
Q Consensus 188 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H---------~~~~~i~~~~d~v~~l~ 246 (605)
+.+++++||--- +|+. .++.+++++.. |..||++-+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 6643 36677887765 889999999 44567888999998775
No 291
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.61 E-value=0.0056 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998543
No 292
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.61 E-value=0.0057 Score=56.62 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998654
No 293
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.60 E-value=0.0049 Score=61.64 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.++|+|++|||||||+|.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999854
No 294
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.56 E-value=0.0036 Score=66.23 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCh
Q 007383 188 DPAVLLLDEPTSGLD---SRSAFNVMQTLKSISASRHRTVILSIHQPSF 233 (605)
Q Consensus 188 ~P~illLDEPtsgLD---~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 233 (605)
.|.++++||-=.=++ +..+..+.+.+++.++. |..++++||.++.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~-g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKY-NGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGG-TCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhh-CeEEEEEcCCHHH
Confidence 588999999988874 67778888888888764 7899999999873
No 295
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.54 E-value=0.0062 Score=57.99 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.52 E-value=0.0069 Score=57.12 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~ 89 (605)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999975
No 297
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.49 E-value=0.0078 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.43 E-value=0.0072 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 299
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.42 E-value=0.008 Score=56.11 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.+++|+|++|||||||++.|+..++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999988754
No 300
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.31 E-value=0.0089 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999864
No 301
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.009 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 302
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.27 E-value=0.0072 Score=56.81 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998654
No 303
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.26 E-value=0.0073 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
-++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999988654
No 304
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.25 E-value=0.029 Score=50.23 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 007383 188 DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQP 231 (605)
Q Consensus 188 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 231 (605)
+..++++||.- .|+...+..+.+.+.+..+ .+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~-~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAER-CRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTT-TTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCC-CCEEEEEecCCC
Confidence 45789999964 6788888888888887532 345677776654
No 305
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.0073 Score=56.29 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
-.++|+|++|+|||||++.+.+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999998653
No 306
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.22 E-value=0.01 Score=57.08 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+|..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 307
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.21 E-value=0.027 Score=54.54 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC---------CCChHHHhcCCeEEEEe
Q 007383 188 DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIH---------QPSFKILSTIDRILLLS 246 (605)
Q Consensus 188 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H---------~~~~~i~~~~d~v~~l~ 246 (605)
+.+++++||--- +|+. .++.+++++.+ |+.||++-+ .+..++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6643 33677777664 899999999 67777888999998875
No 308
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.21 E-value=0.05 Score=53.22 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=42.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCC---------CChHHHhcCCeEEEEe
Q 007383 187 HDPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ---------PSFKILSTIDRILLLS 246 (605)
Q Consensus 187 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~---------~~~~i~~~~d~v~~l~ 246 (605)
.+.+++++||----.| +.++++.++. .|+.||++-++ +..++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987654 5555555554 58999999999 7778889999999875
No 309
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.19 E-value=0.0078 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 310
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.19 E-value=0.01 Score=55.68 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 311
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.17 E-value=0.01 Score=53.73 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 007383 69 LAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 69 ~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
++|+|++|+|||||++.+.+...
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHHhccC
Confidence 78999999999999999987643
No 312
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.14 E-value=0.014 Score=59.78 Aligned_cols=37 Identities=32% Similarity=0.228 Sum_probs=32.7
Q ss_pred CceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 52 PTYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 52 ~~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
....+|+....+ .|.-++|.|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 356889988887 8899999999999999999999875
No 313
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.13 E-value=0.0095 Score=54.44 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 314
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.12 E-value=0.0076 Score=55.86 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998544
No 315
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.11 E-value=0.01 Score=59.67 Aligned_cols=23 Identities=22% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 316
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.09 E-value=0.009 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 317
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.09 E-value=0.009 Score=53.54 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 318
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.06 E-value=0.0091 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998654
No 319
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.03 E-value=0.011 Score=57.29 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998543
No 320
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.03 E-value=0.024 Score=70.99 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=31.0
Q ss_pred eeeeeeE--EEeCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 55 ILKNVSL--TAYPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 55 iL~~vs~--~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
-|+.+.. =+++|+++.|-|++|+|||||+..++....
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a 757 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3666664 699999999999999999999998886543
No 321
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.01 E-value=0.013 Score=57.74 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
-++|+|.+|+|||||+|.|.|....
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc
Confidence 4799999999999999999997643
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.01 E-value=0.0084 Score=53.66 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
No 323
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.00 E-value=0.012 Score=55.62 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 324
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.00 E-value=0.011 Score=60.43 Aligned_cols=23 Identities=48% Similarity=0.609 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999864
No 325
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.00 E-value=0.014 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998754
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.98 E-value=0.01 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998775
No 327
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.97 E-value=0.01 Score=55.33 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 328
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.97 E-value=0.01 Score=53.73 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.95 E-value=0.014 Score=55.21 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35589999999999999999998643
No 330
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.95 E-value=0.01 Score=53.54 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998654
No 331
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.94 E-value=0.018 Score=56.26 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=42.5
Q ss_pred HHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEeC-----CCC----------------hHHHhcCCe
Q 007383 184 SLLHDPAVLLLDEPTSG-LDSRSAFNVMQTLKSISASRHRTVILSIH-----QPS----------------FKILSTIDR 241 (605)
Q Consensus 184 aL~~~P~illLDEPtsg-LD~~~~~~i~~~L~~l~~~~g~tii~~~H-----~~~----------------~~i~~~~d~ 241 (605)
++..+|+++++||+-.- .+.......++.+..+-. .|..++.++| ..+ ..+++.+|.
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~ 158 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD 158 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence 34468999999997642 332222222333333333 4788999988 111 124456677
Q ss_pred EEEEeCCeEEEecChhhHHHHHHhC
Q 007383 242 ILLLSKGSVVHHGTLASLETFLLSS 266 (605)
Q Consensus 242 v~~l~~G~iv~~g~~~~~~~~~~~~ 266 (605)
|.+++ -+|+++.+.+.+-
T Consensus 159 v~lvD-------~~p~~l~~rl~~g 176 (228)
T 2r8r_A 159 LVLID-------LPPRELLERLRDG 176 (228)
T ss_dssp EEEBC-------CCHHHHHHHHHTT
T ss_pred EEEec-------CCHHHHHHHHHCC
Confidence 66654 5677776665543
No 332
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.92 E-value=0.011 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998654
No 333
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.92 E-value=0.01 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.91 E-value=0.011 Score=54.88 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999875
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.90 E-value=0.011 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 336
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.89 E-value=0.013 Score=55.93 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 337
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.88 E-value=0.0096 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.88 E-value=0.015 Score=55.05 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998543
No 339
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.87 E-value=0.014 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 340
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.82 E-value=0.012 Score=54.48 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007383 69 LAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 69 ~ailG~nGaGKTTLL~~l~g~~ 90 (605)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999864
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.79 E-value=0.012 Score=56.78 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998543
No 342
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.78 E-value=0.013 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 343
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.77 E-value=0.011 Score=54.08 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999876
No 344
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.75 E-value=0.017 Score=57.41 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
No 345
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.73 E-value=0.014 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 346
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.73 E-value=0.013 Score=54.12 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 347
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.73 E-value=0.009 Score=54.98 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhC
Q 007383 67 QILAIVGPSGAGKSTLLDILSA 88 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g 88 (605)
--++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999875
No 348
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.73 E-value=0.013 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 349
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.72 E-value=0.017 Score=52.92 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~ 89 (605)
++++|.|+.||||||+-+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 350
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.71 E-value=0.016 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 351
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.71 E-value=0.013 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 352
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.70 E-value=0.017 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.70 E-value=0.016 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 354
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.67 E-value=0.013 Score=53.02 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 355
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.67 E-value=0.014 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987653
No 356
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.65 E-value=0.017 Score=59.01 Aligned_cols=26 Identities=46% Similarity=0.648 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+.| .++|+|.+|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 59999999999999999999864
No 357
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.64 E-value=0.013 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 358
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.64 E-value=0.013 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.64 E-value=0.019 Score=56.52 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999754
No 360
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.61 E-value=0.014 Score=52.53 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007383 69 LAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 69 ~ailG~nGaGKTTLL~~l~g~ 89 (605)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 361
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.60 E-value=0.013 Score=58.61 Aligned_cols=24 Identities=46% Similarity=0.588 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
-++|+|++|+|||||+|.|.|...
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~ 33 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDL 33 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 389999999999999999987643
No 362
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.59 E-value=0.014 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+++|+|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 363
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.50 E-value=0.018 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+.=-++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999754
No 364
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.015 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 365
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.49 E-value=0.015 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998654
No 366
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.47 E-value=0.014 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|+.|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 367
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.47 E-value=0.016 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 368
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.47 E-value=0.016 Score=57.56 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999874
No 369
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.47 E-value=0.015 Score=54.88 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999765
No 370
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.46 E-value=0.03 Score=53.57 Aligned_cols=38 Identities=26% Similarity=0.193 Sum_probs=30.6
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
...++..-..+ .|..++|+||+|+|||||...|+.+..
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 44666665554 688999999999999999999997753
No 371
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.44 E-value=0.016 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++++|++|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998754
No 372
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.41 E-value=0.017 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 373
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.37 E-value=0.018 Score=56.84 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 374
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.34 E-value=0.021 Score=56.29 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 375
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.33 E-value=0.017 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
No 376
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.32 E-value=0.017 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.741 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999765
No 377
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.32 E-value=0.018 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.31 E-value=0.023 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
...+++|.|+.||||||+.+.|+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999854
No 379
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.31 E-value=0.022 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 380
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.29 E-value=0.02 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 381
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.27 E-value=0.018 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 382
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.26 E-value=0.016 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
No 383
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.25 E-value=0.022 Score=56.63 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||+|.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 384
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.25 E-value=0.022 Score=56.88 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=23.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCccE
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTSPTNGT 96 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~~~~G~ 96 (605)
..++++|.+|+|||||+|.|.|......|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 478999999999999999999987654443
No 385
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.24 E-value=0.027 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
No 386
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.23 E-value=0.019 Score=53.45 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 387
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.21 E-value=0.017 Score=60.62 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007383 69 LAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 69 ~ailG~nGaGKTTLL~~l~g~ 89 (605)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 388
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.20 E-value=0.027 Score=54.40 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
-+|.+++|.|++||||||+.+.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876543
No 389
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.017 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 390
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.18 E-value=0.025 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
No 391
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.18 E-value=0.019 Score=56.16 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=22.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 63 AYPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 63 i~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
..+|.+++|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999987654
No 392
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.17 E-value=0.012 Score=56.16 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||+|.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 393
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.17 E-value=0.025 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 394
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.16 E-value=0.021 Score=57.26 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999874
No 395
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.15 E-value=0.031 Score=57.84 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
++.+++|+||+|||||||-..|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 466999999999999999999998764
No 396
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.13 E-value=0.018 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 397
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.018 Score=53.79 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 398
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.12 E-value=0.023 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||++.+.+..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 399
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.11 E-value=0.024 Score=52.83 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 400
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.10 E-value=0.018 Score=53.59 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998865
No 401
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.10 E-value=0.021 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
No 402
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.10 E-value=0.023 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 403
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.09 E-value=0.025 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
-++|+|++|+|||||++.+.+...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4889999999999999999997543
No 404
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.09 E-value=0.023 Score=52.65 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999643
No 405
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.08 E-value=0.024 Score=54.47 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+|-.++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
No 406
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.08 E-value=0.021 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 407
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.07 E-value=0.022 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.++|+|+.|||||||+|.|+|..-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 599999999999999999999853
No 408
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.07 E-value=0.021 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 409
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.05 E-value=0.013 Score=59.42 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
++-+++|.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999864
No 410
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.02 E-value=0.028 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
-++|+|++|+|||||++.+.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998643
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.97 E-value=0.025 Score=57.01 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSA 88 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g 88 (605)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 412
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.97 E-value=0.023 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 413
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.97 E-value=0.022 Score=52.61 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999764
No 414
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.94 E-value=0.02 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999764
No 415
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.92 E-value=0.023 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 416
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.92 E-value=0.033 Score=54.10 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
++..++.|+||+||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998544
No 417
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.90 E-value=0.022 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998653
No 418
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.90 E-value=0.024 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|+.|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 419
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.87 E-value=0.024 Score=52.52 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 420
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.87 E-value=0.021 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 421
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.86 E-value=0.025 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 422
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.85 E-value=0.031 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 423
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.84 E-value=0.022 Score=53.76 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 424
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.84 E-value=0.025 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 425
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.83 E-value=0.025 Score=53.15 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 426
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.82 E-value=0.025 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998653
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.79 E-value=0.033 Score=56.17 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~ 89 (605)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 428
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.78 E-value=0.028 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999843
No 429
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.75 E-value=0.031 Score=54.94 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
No 430
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.75 E-value=0.036 Score=53.87 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998653
No 431
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.75 E-value=0.03 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
No 432
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.74 E-value=0.029 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999753
No 433
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.73 E-value=0.023 Score=53.93 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999887643
No 434
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.73 E-value=0.026 Score=56.68 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.++|+|.+|+|||||+|.|.|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 435
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.67 E-value=0.021 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 436
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.67 E-value=0.021 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
No 437
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.026 Score=53.49 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++++|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 438
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.59 E-value=0.031 Score=55.46 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.++|+|++|+|||||++.|.|...
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 439
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.58 E-value=0.035 Score=59.22 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+.+++.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998643
No 440
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.58 E-value=0.029 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 441
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.58 E-value=0.03 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999887653
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.58 E-value=0.041 Score=56.41 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
+.+++|+||+|||||||...|+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999997653
No 443
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.56 E-value=0.037 Score=53.55 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
+|.++++-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 444
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.53 E-value=0.037 Score=53.68 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=27.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSPTNGTI 97 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~~~G~I 97 (605)
.+|.++++.|++||||||+.+.|+..+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36889999999999999999999988765 3443
No 445
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.52 E-value=0.034 Score=50.96 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
..+..+.|.||+|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987653
No 446
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.039 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 447
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.48 E-value=0.03 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998654
No 448
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.48 E-value=0.02 Score=54.56 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 449
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.47 E-value=0.045 Score=53.36 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.+|.++++.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987654
No 450
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.45 E-value=0.027 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999764
No 451
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.45 E-value=0.038 Score=57.29 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.43 E-value=0.034 Score=55.43 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 453
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.37 E-value=0.074 Score=62.05 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=22.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
..+.|.||+|+|||+|.+.|+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999987643
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.36 E-value=0.042 Score=53.62 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
+|.+++|-|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997764
No 455
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.36 E-value=0.031 Score=55.42 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
+++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
No 456
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.31 E-value=0.048 Score=58.92 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=28.9
Q ss_pred eeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 55 ILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 55 iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 556689999999999999999999998654
No 457
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.28 E-value=0.031 Score=52.66 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 458
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.24 E-value=0.22 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 459
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.10 E-value=0.043 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 460
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.09 E-value=0.074 Score=49.74 Aligned_cols=36 Identities=25% Similarity=0.156 Sum_probs=27.5
Q ss_pred ceeeeeeeEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 53 TYILKNVSLTAYPSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 53 ~~iL~~vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
+..++..-.. -.|.-++|.|+||+|||||...|..+
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3455554444 56889999999999999999888753
No 461
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.06 E-value=0.029 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++++|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999654
No 462
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.06 E-value=0.035 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
No 463
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.05 E-value=0.051 Score=52.23 Aligned_cols=23 Identities=43% Similarity=0.692 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998543
No 464
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.03 E-value=0.052 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
.+++|+||+|||||||-+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998763
No 465
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.03 E-value=0.021 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 466
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.043 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 467
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.82 E-value=0.05 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-.++|+|++|+|||||++-+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998653
No 468
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.77 E-value=0.041 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998653
No 469
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.68 E-value=0.072 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTSPT 93 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~~~ 93 (605)
-.++++|.+|+|||||+|.|.|.....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred ceEEEEecCCCchHHHHHHHhcCceee
Confidence 468999999999999999999986543
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.65 E-value=0.068 Score=54.65 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
..+++|+||+|||||||...|+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35799999999999999999997653
No 471
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.57 E-value=0.046 Score=58.98 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 175 ERRRVSIGLSLLHDPAVLLLDEPT-SGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 175 erqRv~ia~aL~~~P~illLDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
+.+....+...+.+++++++.... .++.... ..+.+.|++ .++.+|++.+..+
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~----~~~pvilV~NK~D 142 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR----TKKPVVLAVNKLD 142 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT----CCSCEEEEEECC-
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH----cCCCEEEEEECcc
Confidence 666666777777888876655444 4565544 455555543 4667777776654
No 472
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.44 E-value=0.047 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++++|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999888753
No 473
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.43 E-value=0.053 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998653
No 474
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.35 E-value=0.049 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.32 E-value=0.068 Score=56.65 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
..+++|+||+|||||||.+.|+....
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999986653
No 476
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.25 E-value=0.073 Score=50.02 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=35.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCC---------hHHHhcCCeEEEE
Q 007383 188 DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS---------FKILSTIDRILLL 245 (605)
Q Consensus 188 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~---------~~i~~~~d~v~~l 245 (605)
+++++++||--. +|+ .+++.|++++++ |..|+++.++.+ ..+...+|.+.-|
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l 136 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKK 136 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEe
Confidence 578999999743 443 366677777765 889999888544 2344456666544
No 477
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.04 E-value=0.057 Score=58.00 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
++.+++++|++|+||||+...|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999976543
No 478
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.03 E-value=0.1 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+--++|+|++|+|||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458999999999999999988764
No 479
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.91 E-value=0.13 Score=48.93 Aligned_cols=72 Identities=24% Similarity=0.174 Sum_probs=54.3
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHhcCCeEEEEeCCe
Q 007383 176 RRRVSIGLSLL--HDPAVLLLDEPTS--GLDSRSAFNVMQTLKSISASRHRTVILSIHQPSFKILSTIDRILLLSKGS 249 (605)
Q Consensus 176 rqRv~ia~aL~--~~P~illLDEPts--gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~d~v~~l~~G~ 249 (605)
++.+.-++..+ .+.++++|||.+. .++-....++++.|.+- -.+..||+|.+.+..++.+.+|-|.-|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 44555566666 5679999999976 23444455688888753 3467999999999999999999999997643
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.72 E-value=0.25 Score=53.57 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=53.4
Q ss_pred cCCCCHHHHHHHHHHHHHh--h---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCC
Q 007383 168 AHNLSGGERRRVSIGLSLL--H---------------DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQ 230 (605)
Q Consensus 168 ~~~LSgGerqRv~ia~aL~--~---------------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~ 230 (605)
.++.||||+|-.-+|++.. . .-.++++||. +-+|...+...+++++++ |.-+|+++=+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence 3689999999665555432 2 1247999999 999999999999999987 4566666655
Q ss_pred CChHHHhcCCeEEEEe
Q 007383 231 PSFKILSTIDRILLLS 246 (605)
Q Consensus 231 ~~~~i~~~~d~v~~l~ 246 (605)
.+....|.++.+-
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 2567788888774
No 481
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.68 E-value=0.061 Score=55.89 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|..|+|||||+|.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999975
No 482
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.62 E-value=0.091 Score=49.25 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 007383 188 DPAVLLLDEPTSGLDSRSAFNVMQTLKSISASRHRTVILSIHQPS 232 (605)
Q Consensus 188 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 232 (605)
++.++++||. ..+++.....+.+.+.+.. .+..+|++++.+.
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS--KSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC--CCCeEEEEeCChh
Confidence 6889999995 5577777777888777643 3456777776653
No 483
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.60 E-value=0.026 Score=65.41 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=28.4
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 59 VSLTAYPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 59 vs~~i~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++.+.+|+.+.|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35567899999999999999999999999875
No 484
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.53 E-value=0.11 Score=49.70 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
|.+++|=|+-||||||+.+.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999988764
No 485
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.84 E-value=0.034 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~ 89 (605)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5899999999999999888653
No 486
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.53 E-value=0.082 Score=56.04 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCcccccccccCCCCHHHHHHHHHHHHHhhCCCEEEE---eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 007383 149 IITVLLTELRLAHLASTRLAHNLSGGERRRVSIGLSLLHDPAVLLL---DEPTSGLDSRSAFNVMQTLKSISASRHRTVI 225 (605)
Q Consensus 149 ~v~~~l~~l~L~~~~~~~~~~~LSgGerqRv~ia~aL~~~P~illL---DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii 225 (605)
.++++++.++.... ...+|.+|.+++.-...+...|-++++ |.+ + ...+.++.+.+.+ .+..++
T Consensus 181 ~~~~~l~~l~~~~~-----~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~---~~~l~~l~~~~~~-~~~~vv 247 (397)
T 1wxq_A 181 DVWEAMHKLNLPED-----PTKWSQDDLLAFASEIRRVNKPMVIAANKADAA----S---DEQIKRLVREEEK-RGYIVI 247 (397)
T ss_dssp HHHHHHHHTTCCSC-----GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----C---HHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHhccCCc-----cccCCHHHHHHHHHhhhccCCCEEEEEeCcccc----c---hHHHHHHHHHHhh-cCCcEE
Confidence 45666666665432 247899998888777777779999887 544 1 1223333333322 255666
Q ss_pred EEeCCCChHHHhcCC
Q 007383 226 LSIHQPSFKILSTID 240 (605)
Q Consensus 226 ~~~H~~~~~i~~~~d 240 (605)
.++=....++.++.+
T Consensus 248 ~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 248 PTSAAAELTLRKAAK 262 (397)
T ss_dssp EECHHHHHHHHSCSS
T ss_pred EEeccchhhHHHHHh
Confidence 665444445555444
No 487
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.43 E-value=0.098 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
--+||+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999997543
No 488
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.35 E-value=0.1 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999888765
No 489
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.33 E-value=0.023 Score=53.35 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTS 91 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~ 91 (605)
-++|+|++|+|||||++.+.+...
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999999999999999987543
No 490
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.13 E-value=0.12 Score=53.63 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 65 PSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 65 ~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998764
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.07 E-value=0.086 Score=56.44 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 492
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.01 E-value=0.067 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HhCC
Q 007383 68 ILAIVGPSGAGKSTLLDI-LSAR 89 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~-l~g~ 89 (605)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
No 493
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.99 E-value=0.12 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSAR 89 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~ 89 (605)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567889999999999999999875
No 494
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.93 E-value=0.059 Score=53.20 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=22.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 62 TAYPSQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 62 ~i~~Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
....| +.|.||+|+|||||.++|+...
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33444 7799999999999999999753
No 495
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.92 E-value=0.086 Score=54.49 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC
Q 007383 64 YPSQILAIVGPSGAGKSTLLDILSARTSP 92 (605)
Q Consensus 64 ~~Ge~~ailG~nGaGKTTLL~~l~g~~~~ 92 (605)
.+|..+.|.||+|+|||||.+.++.....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35678999999999999999999977653
No 496
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.91 E-value=0.13 Score=52.46 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007383 66 SQILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 66 Ge~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
++-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 497
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=90.85 E-value=0.13 Score=54.04 Aligned_cols=37 Identities=35% Similarity=0.452 Sum_probs=29.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCeeC
Q 007383 68 ILAIVGPSGAGKSTLLDILSARTSP-----------TNGTILLNSSPI 104 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~~~-----------~~G~I~~~g~~~ 104 (605)
-+||+|.+-+|||||+|.|+|-... ..|.+.++|.++
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 5899999999999999999997532 247777777653
No 498
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.72 E-value=0.22 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007383 68 ILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 68 ~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
.++|+|.+++|||||+|.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 499
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=90.69 E-value=0.11 Score=57.63 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007383 67 QILAIVGPSGAGKSTLLDILSART 90 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~ 90 (605)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999975
No 500
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.68 E-value=0.033 Score=59.77 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=26.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007383 67 QILAIVGPSGAGKSTLLDILSARTSPTNGTILL 99 (605)
Q Consensus 67 e~~ailG~nGaGKTTLL~~l~g~~~~~~G~I~~ 99 (605)
.+++++|++|+||||+...|++.+.....+|.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll 132 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 589999999999999999999876533333443
Done!